WorldWideScience

Sample records for red bluff diversion

  1. Endwall convective heat transfer for bluff bodies

    DEFF Research Database (Denmark)

    Wang, Lei; Salewski, Mirko; Sundén, Bengt

    2012-01-01

    The endwall heat transfer characteristics of forced flow past bluff bodies have been investigated using liquid crystal thermography (LCT). The bluff body is placed in a rectangular channel with both its ends attached to the endwalls. The Reynolds number varies from 50,000 to 100,000. In this study......, a single bluff body and two bluff bodies arranged in tandem are considered. Due to the formation of horseshoe vortices, the heat transfer is enhanced appreciably for both cases. However, for the case of two bluff bodies in tandem, it is found that the presence of the second bluff body decreases the heat...... transfer as compared to the case of a single bluff body. In addition, the results show that the heat transfer exhibits Reynolds number similarity. For a single bluff body, the Nusselt number profiles collapse well when the data are scaled by Re0.55; for two bluff bodies arranged in tandem, the heat...

  2. Bluff evolution along coastal drumlins: Boston Harbor Islands, Massachusetts

    Science.gov (United States)

    Himmelstoss, E.A.; FitzGerald, D.M.; Rosen, P.S.; Allen, J.R.

    2006-01-01

    A series of partially drowned drumlins forms the backbone of the inner islands within Boston Harbor. The shoreline of these rounded glacial deposits is composed of actively retreating bluffs formed by continual wave attack. Comparisons of bluffs reveal variability in their height and lateral extent, as well as in the dominant mechanism causing their retreat. Two processes are responsible for bluff erosion and yield distinct bluff morphologies: (1) wave attack undercuts the bluff and causes episodic slumping, yielding planar bluff slopes, and (2) subaerial processes such as rainfall create irregular slopes characterized by rills and gullies. We propose a model of drumlin bluff evolution that is based on processes of erosion and physical characteristics such as bluff height, slope morphology, and the orientation of the bluff with respect to the long axis of the drumlin and its topographic crest. The four phases of drumlin bluff evolution consist of (1) initial formation of bluff, with retreat dominated by wave notching and slumping processes; (2) rill and gully development as bluff heights exceed 10 m and slumped sediment at bluff base inhibits wave attack; (3) return of wave notching and slumping as bluff heights decrease; and (4) final development of boulder retreat lag as last remnants of drumlin are eroded by wave action. These phases capture the important physical processes of drumlin evolution in Boston Harbor and could apply to other eroding coastal drumlin deposits.

  3. The impact of hydrogen enrichment and bluff-body lip thickness on characteristics of blended propane/hydrogen bluff-body stabilized turbulent diffusion flames

    International Nuclear Information System (INIS)

    Kashir, Babak; Tabejamaat, Sadegh; Jalalatian, Nafiseh

    2015-01-01

    Highlights: • Characteristics of C 3 H 8 –H 2 bluff-body stabilized flames are investigated. • Decreasing the bluff-body lip thickness led into enhanced flame length. • CO mass fraction is increased with reducing hydrogen content in the fuel stream. • Augmenting hydrogen content increased the maximum temperature. • Jet-like zone in propane–hydrogen bluff-body stabilized flames is very unstable. - Abstract: At the beginning of this study, the well-known turbulent bluff-body stabilized diffusion flame of HM1 is simulated by a coupled flamelet/radiation approach. The HM1 flame comprises a CH 4 :H 2 [50:50 Vol.] jet flame at a Reynolds number of 15,800. The results showed reasonable agreement for the flow field and species. Afterwards, the abovementioned approach is employed to investigate the effects of hydrogen addition on bluff-body stabilized flames of propane–hydrogen. Adding hydrogen to the blended fuel of propane/hydrogen shifts the recirculation zone outwards the bluff-body and thus culminates in increased flame length. Besides this, the flame length is predicted to be enhanced with decreasing the lip thickness of the bluff-body configuration. The CO emission level is found to be decreased with hydrogen addition in near-burner and far field regions which might be attributed to the decrease of inflow carbon atoms. The local radiative heat power reveals higher values for fuel blends with decreased contents of hydrogen at the recirculation and jet-like zones. This might be attributed to the increased local heat release rate due to breaking further carbon bonds

  4. Short-Term Bluff Recession Behavior Along Pennsylvania's Great Lakes Coastline, USA

    Science.gov (United States)

    Foyle, A. M.; Naber, M. D.; Pluta, M. J.

    2011-12-01

    Coastal bluff retreat is a common problem along the world's unconsolidated coastlines. On the Great Lakes coast of Pennsylvania, Quaternary clay-rich glacial till, paleo-lake plain, and sandy strandplain sequences overlie Devonian bedrock. These Quaternary strata are subject to subaerial and lacustrine erosional processes that cause permanent coastal land loss at spatially variable rates, with the former (runoff, slumping, groundwater focusing, etc) dominating over the latter (wave and current scour, abrasion, etc). Land loss is of concern to environmental agencies because land-use planning should account for spatial and temporal variability in land-loss rates, and because bluff erosion contributes to a temporary degradation in coastal water quality. The goal of this study is to evaluate spatial variability in bluff retreat rates along a 20 km sector of Pennsylvania's short Great Lakes coast. High resolution LiDAR data covering a one-decade time frame (1998-2007) permit bluff-crest mapping on two comparable data sets that captures change within a timeframe similar to CZM planning intervals. Short-term recession data can be more useful, cost-effective, and accurate than long-term analyses that use lower-resolution field measurements, T-sheets, and historical aerial photography. Bluffs along the 20 km coastal study site consist of up to 26 m of unlithified Quaternary sediments overlying a 1-4 m ledge of sub-horizontal Devonian shale and sandstone. Bluff slopes range from 20-90 degrees, beaches are narrow (wide) or absent, and the bluffs are seasonally shielded by ground-freeze and lake ice. DEMs, hillshades, and slope and contour maps were generated from bare-earth 1998 and 2007 LiDAR data, and checked against 2005 aerial ortho-photography. Maps were analyzed at a scale of 1:120 in ArcGIS and the bluff crest was identified primarily by the visual-break-in-slope method. Rates of bluff retreat derived using DSAS vary from unresolvable to as much as 2.2 m/yr, averaging

  5. Investigation of bluff-body micro-flameless combustion

    International Nuclear Information System (INIS)

    Hosseini, Seyed Ehsan; Wahid, Mazlan Abdul

    2014-01-01

    Highlights: • The temperature uniformity of the micro-flameless combustion increases when a triangular bluff-body is applied. • The velocity and temperature of exhaust gases are higher in micro-flameless combustion compared to the conventional mode. • The rate of fuel–oxidizer consumption in micro-flameless mode is lower than conventional micro-combustion. - Abstract: Characteristics of lean premixed conventional micro-combustion and lean non-premixed flameless regime of methane/air are investigated in this paper by solving three-dimensional governing equations. At moderate equivalence ratio (∅ = 0.5), standard k–ε and the eddy-dissipation concept are employed to simulate temperature distribution and combustion stability of these models. The effect of bluff-body on the temperature distribution of both conventional and flameless mode is developed. The results show that in the premixed conventional micro-combustion the stability of the flame is increased when a triangular bluff-body is applied. Moreover, micro-flameless combustion is more stable when bluff-body is used. Micro-flameless mode with bluff-body and 7% O 2 concentration (when N 2 is used as diluent) illustrated better performance than other cases. The maximum temperature in premixed conventional micro-combustion and micro-flameless combustion was recorded 2200 K and 1520 K respectively. Indeed, the flue gas temperature of conventional mode and flameless combustion was 1300 K and 1500 K respectively. The fluctuation of temperature in the conventional micro-combustor wall has negative effects on the combustor and reduces the lifetime of micro-combustor. However, in the micro-flameless mode, the wall temperature is moderate and uniform. The rate of fuel–oxidizer consumption in micro-flameless mode takes longer time and the period of cylinders recharging is prolonged

  6. The anchoring mechanism of a bluff-body stabilized laminar premixed flame

    KAUST Repository

    Kedia, Kushal S.

    2014-09-01

    The objective of this work is to investigate the mechanism of the laminar premixed flame anchoring near a heat-conducting bluff-body. We use unsteady, fully resolved, two-dimensional simulations with detailed chemical kinetics and species transport for methane-air combustion. No artificial flame anchoring boundary conditions were imposed. Simulations show a shear-layer stabilized flame just downstream of the bluff-body, with a recirculation zone formed by the products of combustion. A steel bluff-body resulted in a slightly larger recirculation zone than a ceramic bluff-body; the size of which grew as the equivalence ratio was decreased. A significant departure from the conventional two-zone flame-structure is shown in the anchoring region. In this region, the reaction zone is associated with a large negative energy convection (directed from products to reactants) resulting in a negative flame-displacement speed. It is shown that the premixed flame anchors at an immediate downstream location near the bluff-body where favorable ignition conditions are established; a region associated with (1) a sufficiently high temperature impacted by the conjugate heat exchange between the heat-conducting bluff-body and the hot reacting flow and (2) a locally maximum stoichiometry characterized by the preferential diffusion effects. © 2014 The Combustion Institute.

  7. Particle Methods in Bluff Body Aerodynamics

    DEFF Research Database (Denmark)

    Rasmussen, Johannes Tophøj

    . The implementation is two-dimensional and sequential. The implementation is validated against the analytic solution to the Perlman test case and by free-space simulations of the onset flow around fixed and rotating circular cylinders and bluff body flows around bridge sections. Finally a three-dimensional vortex...... is important. This dissertation focuses on the use of vortex particle methods and computational efficiency. The work is divided into three parts. A novel method for the simulation of the aerodynamic admittance in bluff body aerodynamics is presented. The method involves a model for describing oncoming...... section during the construction phase and the swimming motion of the medusa Aurelia aurita....

  8. Site-Specific Bluff Recession Rates Measured on the Alaskan Beaufort Sea Coast

    Science.gov (United States)

    Richmond, B.; Gadd, P.; Crowell, W.

    2017-12-01

    OverviewThe effects of climate change are being studied globally with coastal erosion in Arctic regions of particular concern. In support of Hilcorp Alaska's Northstar Development, short- and long-term bluff recession rates have been documented at a pipeline shore crossing located in Gwydyr Bay on the Alaskan Beaufort Sea coast. These data are presented, along with the predominant forcing mechanisms, and compared to local and regional recession rates recently published by the U.S. Geological Survey (USGS). Arctic Bluff RecessionCoastal retreat along the northern coast of Alaska occurs at two different rates: infrequent, but rapid erosion induced by strong westerly storms, and seasonal retreat related to thawing and sediment removal under more moderate wave conditions. Variability in the rate of bluff retreat is related to a number of factors, including bluff composition (ice content and sediment type), existence of a fronting beach, and wave exposure. Measured Bluff Recession at the Northstar Pipeline Shore CrossingThe location of the Northstar Development pipeline shore crossing was chosen based on analysis of historical aerial photos acquired between 1949 and 1996. Over this 47-year period, the average annualized rate of bluff retreat in the study area ranged from 1.6 to 3.0 ft/yr. Beginning in 1996, ground-based shoreline monitoring surveys have been conducted along the bluff and ten shore-perpendicular transects at the site. The rates of bluff retreat derived from the survey data have been modest, ranging from no change to 5.8 ft/yr. The monitoring surveys indicate that waves and currents erode the bluffs by direct impact only during infrequent, but strong westerly storms that promote a short-term rise in sea level (storm surge). The more prevalent easterly storms can cause set-down, or reduction in the sea level which limits direct wave impact on the bluff, thereby decreasing the potential for wave induced erosion. Comparative StudiesRecent studies conducted

  9. Stratigraphy and Facies of Cretaceous Schrader Bluff and Prince Creek Formations in Colville River Bluffs, North Slope, Alaska

    Science.gov (United States)

    Flores, Romeo M.; Myers, Mark D.; Houseknecht, David W.; Stricker, Gary D.; Brizzolara, Donald W.; Ryherd, Timothy J.; Takahashi, Kenneth I.

    2007-01-01

    Stratigraphic and sedimentologic studies of facies of the Upper Cretaceous rocks along the Colville River Bluffs in the west-central North Slope of Alaska identified barrier shoreface deposits consisting of vertically stacked, coarsening-upward parasequences in the Schrader Bluff Formation. This vertical stack of parasequence deposits represents progradational sequences that were affected by shoaling and deepening cycles caused by fluctuations of sea level. Further, the vertical stack may have served to stabilize accumulation of voluminous coal deposits in the Prince Creek Formation, which formed braided, high-sinuosity meandering, anastomosed, and low-sinuosity meandering fluvial channels and related flood plain deposits. The erosional contact at the top of the uppermost coarsening-upward sequence, however, suggests a significant drop of base level (relative sea level) that permitted a semiregional subaerial unconformity to develop at the contact between the Schrader Bluff and Prince Creek Formations. This drop of relative sea level may have been followed by a relative sea-level rise to accommodate coal deposition directly above the unconformity. This rise was followed by a second drop of relative sea level, with formation of incised valley topography as much as 75 ft deep and an equivalent surface of a major marine erosion or mass wasting, or both, either of which can be traced from the Colville River Bluffs basinward to the subsurface in the west-central North Slope. The Prince Creek fluvial deposits represent late Campanian to late Maastrichtian depositional environments that were affected by these base level changes influenced by tectonism, basin subsidence, and sea-level fluctuations.

  10. Processes of coastal bluff erosion in weakly lithified sands, Pacifica, California, USA

    Science.gov (United States)

    Collins, B.D.; Sitar, N.

    2008-01-01

    Coastal bluff erosion and landsliding are currently the major geomorphic processes sculpting much of the marine terrace dominated coastline of northern California. In this study, we identify the spatial and temporal processes responsible for erosion and landsliding in an area of weakly lithified sand coastal bluffs located south of San Francisco, California. Using the results of a five year observational study consisting of site visits, terrestrial lidar scanning, and development of empirical failure indices, we identify the lithologic and process controls that determine the failure mechanism and mode for coastal bluff retreat in this region and present concise descriptions of each process. Bluffs composed of weakly cemented sands (unconfined compressive strength - UCS between 5 and 30??kPa) fail principally due to oversteepening by wave action with maximum slope inclinations on the order of 65 at incipient failure. Periods of significant wave action were identified on the basis of an empirical wave run-up equation, predicting failure when wave run-up exceeds the seasonal average value and the bluff toe elevation. The empirical relationship was verified through recorded observations of failures. Bluffs composed of moderately cemented sands (UCS up to 400??kPa) fail due to precipitation-induced groundwater seepage, which leads to tensile strength reduction and fracture. An empirical rainfall threshold was also developed to predict failure on the basis of a 48-hour cumulative precipitation index but was found to be dependent on a time delay in groundwater seepage in some cases.

  11. Argumentative Bluff in Eristic Discussion: An Analysis and Evaluation

    OpenAIRE

    van Laar, Jan Albert

    2010-01-01

    How does the analysis and evaluation of argumentation depend on the dialogue type in which the argumentation has been put forward? This paper focuses on argumentative bluff in eristic discussion. Argumentation cannot be presented without conveying the pretence that it is dialectically reasonable, as well as, at least to some degree, rhetorically effective. Within eristic discussion it can be profitable to engage in bluff with respect to such claims. However, it will be argued that such bluffi...

  12. High Resolution Monitoring of River Bluff Erosion Reveals Failure Mechanisms and Geomorphically Effective Flows

    Directory of Open Access Journals (Sweden)

    Sara Ann Kelly

    2018-03-01

    Full Text Available Using a combination of Structure from Motion and time lapse photogrammetry, we document rapid river bluff erosion occurring in the Greater Blue Earth River (GBER basin, a muddy tributary to the sediment-impaired Minnesota River in south central Minnesota. Our datasets elucidated dominant bluff failure mechanisms and rates of bluff retreat in a transient system responding to ongoing streamflow increases and glacial legacy impacts. Specifically, we document the importance of fluvial scour, freeze–thaw, as well as other drivers of bluff erosion. We find that even small flows, a mere 30% of the two-year recurrence interval flow, are capable of causing bluff erosion. During our study period (2014–2017, the most erosion was associated with two large flood events with 13- and 25-year return periods. However, based on the frequency of floods and magnitude of bluff face erosion associated with floods over the last 78 years, the 1.2-year return interval flood has likely accomplished the most cumulative erosion, and is thus more geomorphically effective than larger magnitude floods. Flows in the GBER basin are nonstationary, increasing across the full range of return intervals. We find that management implications differ considerably depending on whether the bluff erosion-runoff power law exponent, γ, is greater than, equal to, or less than 1. Previous research has recommended installation of water retention sites in tributaries to the Minnesota River in order to reduce flows and sediment loading from river bluffs. Our findings support the notion that water retention would be an effective practice to reduce sediment loading and highlight the importance of managing for both runoff frequency and magnitude.

  13. Interactions of bluff-body obstacles with turbulent airflows affecting evaporative fluxes from porous surfaces

    Science.gov (United States)

    Haghighi, Erfan; Or, Dani

    2015-11-01

    Bluff-body obstacles interacting with turbulent airflows are common in many natural and engineering applications (from desert pavement and shrubs over natural surfaces to cylindrical elements in compact heat exchangers). Even with obstacles of simple geometry, their interactions within turbulent airflows result in a complex and unsteady flow field that affects surface drag partitioning and transport of scalars from adjacent evaporating surfaces. Observations of spatio-temporal thermal patterns on evaporating porous surfaces adjacent to bluff-body obstacles depict well-defined and persistent zonation of evaporation rates that were used to construct a simple mechanistic model for surface-turbulence interactions. Results from evaporative drying of sand surfaces with isolated cylindrical elements (bluff bodies) subjected to constant turbulent airflows were in good agreement with model predictions for localized exchange rates. Experimental and theoretical results show persistent enhancement of evaporative fluxes from bluff-rough surfaces relative to smooth flat surfaces under similar conditions. The enhancement is attributed to formation of vortices that induce a thinner boundary layer over part of the interacting surface footprint. For a practical range of air velocities (0.5-4.0 m/s), low-aspect ratio cylindrical bluff elements placed on evaporating sand surfaces enhanced evaporative mass losses (relative to a flat surface) by up to 300% for high density of elements and high wind velocity, similar to observations reported in the literature. Concepts from drag partitioning were used to generalize the model and upscale predictions to evaporation from surfaces with multiple obstacles for potential applications to natural bluff-rough surfaces.

  14. Diversity and population structure of red rice germplasm in Bangladesh.

    Science.gov (United States)

    Islam, M Z; Khalequzzaman, M; Prince, M F R K; Siddique, M A; Rashid, E S M H; Ahmed, M S U; Pittendrigh, B R; Ali, M P

    2018-01-01

    While the functionality and healthy food value of red rice have increased its popularity, such that market demand for it is expected to rise, most strains suffer from low grain yield. To perform diversity and population structure analyses of red rice germplasm, therefore, becomes essential for improving yields for commercial production. In this study, fifty red rice germplasm from the Bangladesh Rice Research Institute (BRRI) genebank were characterized both morphologically and genetically using fifty simple sequence repeat (SSR) markers. Overall, 162 alleles were detected by the markers with the detected allele number varying from two to seven. Additionally, 22 unique alleles were identified for use as a germplasm diagnostic tool. The highest and lowest polymorphic information content (PIC) indices were 0.75 and 0.04 found in markers RM282 and RM304, respectively, and genetic diversity was moderate, varying from 0.05 to 0.78 (average: 0.35). While phylogenetic cluster analysis of the fifteen distance-based agro-morphological traits divided the germplasm into five clusters (I, II, III, IV and V), a similar SSR analysis yielded only three major groups (I, II, and III), and a model-based population structure analysis yielded four (A, B, C and D). Both principal component and neighbors joining tree analysis from the population structure method showed the tested germplasm as highly diverse in structure. Moreover, an analysis of molecular variance (AMOVA), as well as a pairwise FST analysis, both indicated significant differentiation (ranging from 0.108 to 0.207) among all pairs of populations, suggesting that all four population structure groups differed significantly. Populations A and D were the most differentiated from each other by FST. Findings from this study suggest that the diverse germplasm and polymorphic trait-linked SSR markers of red rice are suitable for the detection of economically desirable trait loci/genes for use in future molecular breeding programs.

  15. Numerical study of the behavior of methane-hydrogen/air pre-mixed flame in a micro reactor equipped with catalytic segmented bluff body

    International Nuclear Information System (INIS)

    Baigmohammadi, Mohammadreza; Tabejamaat, Sadegh; Zarvandi, Jalal

    2015-01-01

    In this work, combustion characteristics of premixed methane-hydrogen/air in a micro reactor equipped with a catalytic bluff body is investigated numerically. In this regard, the detailed chemistry schemes for gas phase (homogeneous) and the catalyst surface (heterogeneous) are used. The applied catalytic bluff body is coated with a thin layer of platinum (Pt) on its surface. Also, the lean reactive mixture is entered to the reactor with equivalence ratio 0.9. The results of this study showed that the use of catalytic bluff body in the center of a micro reactor can significantly increase the flame stability, especially at high velocities. Moreover, it is found that a catalytic bluff body with several cavities on its surface and also high thermal conductivity improves the flame stability more than a catalytic bluff body without cavities and low thermal conductivity. Finally, it is maintained that the most advantage of using the catalytic bluff body is its easy manufacturing process as compared to the catalytic wall. This matter seems to be more prevalent when we want to create several cavities with various sizes on the bluff-body. - Highlights: • Presence of a bluff body in a micro reactor can move the flame towards the upstream. • Catalytic bluff body can significantly increase flame stability at high velocities. • Creating non-catalytic cavities on the bluff body promotes homogeneous reactions. • Segmented catalytic bluff body improves the flame stability more than a simple one. • Creating the segments on a bluff body is easier compared to a wall

  16. Disposal of chemical agents and munitions stored at Pine Bluff Arsenal, Pine Bluff, Arkansas

    Energy Technology Data Exchange (ETDEWEB)

    Ensminger, J.T.; Hillsman, E.L.; Johnson, R.D.; Morrisey, J.A.; Staub, W.P.; Boston, C.R.; Hunsaker, D.B.; Leibsch, E.; Rickert, L.W.; Tolbert, V.R.; Zimmerman, G.P.

    1991-09-01

    The Pine Bluff Arsenal (PBA) near Pine Bluff, Arkansas, is one of eight continental United States (CONUS) Army installations where lethal unitary chemical agents and munitions are stored and where destruction of agents and munitions is proposed under the Chemical Stockpile Disposal Program (CSDP). The chemical agent inventory at PBA consists of approximately 12%, by weight, of the total US stockpile. The destruction of the stockpile is necessary to eliminate the risk to the public from continued storage and to dispose of obsolete and leaking munitions. In 1988 the US Army issued a Final Programmatic Environmental Impact Statement (FPEIS) for the CSDP that identified on-site disposal of agents and munitions as the environmentally preferred alternative (i.e., the alternative with the least potential to cause significant adverse impacts). The purpose of this report is to examine the proposed implementation of on-site disposal at PBA in light of more recent and more detailed data than those on which the FPEIS is based. New population data were used to compute fatalities using the same computation methods and values for all other parameters as in the FPEIS. Results indicate that all alternatives are indistinguishable when the potential health impacts to the PBA community are considered. However, risks from on-site disposal are in all cases equal to or less than risks from other alternatives. Furthermore, no unique resources with the potential to prevent or delay implementation of on-site disposal at PBA have been identified.

  17. Diversity and population structure of red rice germplasm in Bangladesh.

    Directory of Open Access Journals (Sweden)

    M Z Islam

    Full Text Available While the functionality and healthy food value of red rice have increased its popularity, such that market demand for it is expected to rise, most strains suffer from low grain yield. To perform diversity and population structure analyses of red rice germplasm, therefore, becomes essential for improving yields for commercial production. In this study, fifty red rice germplasm from the Bangladesh Rice Research Institute (BRRI genebank were characterized both morphologically and genetically using fifty simple sequence repeat (SSR markers. Overall, 162 alleles were detected by the markers with the detected allele number varying from two to seven. Additionally, 22 unique alleles were identified for use as a germplasm diagnostic tool. The highest and lowest polymorphic information content (PIC indices were 0.75 and 0.04 found in markers RM282 and RM304, respectively, and genetic diversity was moderate, varying from 0.05 to 0.78 (average: 0.35. While phylogenetic cluster analysis of the fifteen distance-based agro-morphological traits divided the germplasm into five clusters (I, II, III, IV and V, a similar SSR analysis yielded only three major groups (I, II, and III, and a model-based population structure analysis yielded four (A, B, C and D. Both principal component and neighbors joining tree analysis from the population structure method showed the tested germplasm as highly diverse in structure. Moreover, an analysis of molecular variance (AMOVA, as well as a pairwise FST analysis, both indicated significant differentiation (ranging from 0.108 to 0.207 among all pairs of populations, suggesting that all four population structure groups differed significantly. Populations A and D were the most differentiated from each other by FST. Findings from this study suggest that the diverse germplasm and polymorphic trait-linked SSR markers of red rice are suitable for the detection of economically desirable trait loci/genes for use in future molecular

  18. The response of a harmonically forced premixed flame stabilized on a heat-conducting bluff-body

    KAUST Repository

    Kedia, Kushal S.

    2015-01-01

    © 2014 The Combustion Institute. The objective of this work is to investigate the unsteady response of a bluff-body stabilized laminar premixed flame to harmonic inlet velocity excitation. A time series analysis was performed to analyze the physical sequence of events at a fixed longitudinal forcing frequency of 100 Hz for cases with (1) two different equivalence ratios and (2) two different thermal properties of the stabilizing bluff-body. It was observed that conjugate heat exchange between the heat conducting bluff-body and the surrounding reacting flow has a crucial impact on the dynamic response. The flame area and anchoring location, the net conjugate heat transfer and the total heat release underwent significant oscillations. The latter was mean shifted and had multiple frequencies. The burning velocity varied significantly along the flame length and the recirculation zone underwent complex changes in its shape and size during an unsteady cycle. The lower equivalence ratio case exhibited vortex shedding after an initial symmetric response with periodic flame extinction and re-ignition along its surface, unlike the higher equivalence ratio case. The metal/ceramic bluff-body showed a net heat transfer directed from/to the bluff-body, to/from the reacting flow during an unsteady cycle, resulting in a significantly different flame response for the two otherwise equivalent cases.

  19. Probing genetic diversity to characterize red rot resistance in sugarcane

    Energy Technology Data Exchange (ETDEWEB)

    Mumtaz, A S; Dure-e-Nayab,; Iqbal, M J; Shinwari, Z.K., E-mail: asmumtaz@qau.edu.pk

    2011-10-15

    Genetic diversity was assessed in a set of twelve sugarcane genotypes using Random Amplified Polymorphic DNA (RAPD). A total of thirty-two oligo-primers were employed, sixteen of them revealed amplification at 149 loci, out of which 136 were polymorphic. The genotype SPSG-26 showed the highest number of polymorphic loci, followed by CSSG-668 and HSF-242. Pairwise genetic similarity ranged from 67.2% to 83.3%. The UPGMA cluster analysis resolved most of the accessions in two groups. The clustering pattern did not place all resistant varieties in one or related group which depict diverse resistance source in the present set of sugarcane varieties. Ten primers revealed genotype specific bands among which four primers (K07, H02, K10 and F01) produced multiple genotype specific bands that aid genotype identification especially those with red rot resistance. The present study not only provided information on the genetic diversity among the genotypes but also revealed the potential of RAPD-PCR markers for genotype identification and therefore could be utilized in marker assisted selection for red rot resistance in sugarcane. (author)

  20. Numerical investigation on the combustion characteristics of methane/air in a micro-combustor with a hollow hemispherical bluff body

    International Nuclear Information System (INIS)

    Zhang, Li; Zhu, Junchen; Yan, Yunfei; Guo, Hongliang; Yang, Zhongqing

    2015-01-01

    Highlights: • A micro-combustor with a hollow hemisphere bluff body is developed. • Blow-off limit of reactor is expanded 2.5 times by the hollow hemisphere bluff body. • Methane conversion rate of combustor sharply increases at the location of bluff body. • Methane conversion rate is mainly affected by equivalence ratio and inlet velocity. • Recirculation zone expands blow-off limit and increases methane conversion rate. - Abstract: The combustion characteristics of methane in a cube micro-combustor with a hollow hemispherical bluff body were numerically investigated. The blow-off limit, recirculation zone length and methane conversion rate were examined. The results illustrate that the blow-off limit of the micro-combustor with a hollow hemispherical bluff body is 2.5 times higher than that without bluff body, which are 24.5 m/s and 9.5 m/s at the same equivalence ratio (ϕ = 1), respectively. With the use of hollow hemispherical bluff body, methane conversion sharply increases from 0.24% to 17.95% at 3 mm along the inlet-flow direction, where is the location of bluff-body, which is not affected by equivalence ratio and inlet velocity. The recirculation zone size has determined influence on residence time of the mixture gas, which increases with the increase of inlet velocity. Methane conversion rate is determined by equivalence ratio and inlet velocity. Methane conversion rate firstly increases and then decreases when the equivalence ratio and inlet velocity increase, reaching the maximum value (97.84%) at ϕ = 1 and 0.02 m/s. Methane conversion rate sharply increases from 45% to 97.84% when the inlet velocity increases from 0.008 m/s to 0.02 m/s

  1. Diversity of picoeukaryotes at an oligotrophic site off the Northeastern Red Sea Coast.

    Science.gov (United States)

    Acosta, Francisco; Ngugi, David Kamanda; Stingl, Ulrich

    2013-08-20

    Picoeukaryotes are protists ≤ 3 μm composed of a wide diversity of taxonomic groups. They are an important constituent of the ocean's microbiota and perform essential ecological roles in marine nutrient and carbon cycles. Despite their importance, the true extent of their diversity has only recently been uncovered by molecular surveys that resulted in the discovery of a substantial number of previously unknown groups. No study on picoeukaryote diversity has been conducted so far in the main Red Sea basin-a unique marine environment characterized by oligotrophic conditions, high levels of irradiance, high salinity and increased water temperature. We sampled surface waters off the coast of the northeastern Red Sea and analyzed the picoeukaryotic diversity using Sanger-based clone libraries of the 18S rRNA gene in order to produce high quality, nearly full-length sequences. The community captured by our approach was dominated by three main phyla, the alveolates, stramenopiles and chlorophytes; members of Radiolaria, Cercozoa and Haptophyta were also found, albeit in low abundances. Photosynthetic organisms were especially diverse and abundant in the sample, confirming the importance of picophytoplankton for primary production in the basin as well as indicating the existence of numerous ecological micro-niches for this trophic level in the upper euphotic zone. Heterotrophic organisms were mostly composed of the presumably parasitic Marine Alveolates (MALV) and the presumably bacterivorous Marine Stramenopiles (MAST) groups. A small number of sequences that did not cluster closely with known clades were also found, especially in the MALV-II group, some of which could potentially belong to novel clades. This study provides the first snapshot of the picoeukaryotic diversity present in surface waters of the Red Sea, hence setting the stage for large-scale surveying and characterization of the eukaryotic diversity in the entire basin. Our results indicate that the

  2. Diversity of picoeukaryotes at an oligotrophic site off the Northeastern Red Sea Coast.

    KAUST Repository

    Acosta, Francisco; Ngugi, David; Stingl, Ulrich

    2013-01-01

    , the true extent of their diversity has only recently been uncovered by molecular surveys that resulted in the discovery of a substantial number of previously unknown groups. No study on picoeukaryote diversity has been conducted so far in the main Red Sea

  3. Argumentative Bluff in Eristic Discussion : An Analysis and Evaluation

    NARCIS (Netherlands)

    van Laar, Jan Albert

    How does the analysis and evaluation of argumentation depend on the dialogue type in which the argumentation has been put forward? This paper focuses on argumentative bluff in eristic discussion. Argumentation cannot be presented without conveying the pretence that it is dialectically reasonable, as

  4. Distribution and diversity of Prochlorococcus ecotypes in the Red Sea

    KAUST Repository

    Shibl, Ahmed A.; Thompson, Luke R.; Ngugi, David; Stingl, Ulrich

    2014-01-01

    Photosynthetic prokaryotes of the genus Prochlorococcus play a major role in global primary production in the world's oligotrophic oceans. A recent study on pelagic bacterioplankton communities in the northern and central Red Sea indicated that the predominant cyanobacterial 16S rRNA gene sequence types were from Prochlorococcus cells belonging to a high-light-adapted ecotype (HL II). In this study, we analyzed microdiversity of Prochlorococcus sp. at multiple depths within and below the euphotic zone in the northern, central, and southern regions of the Red Sea, as well as in surface waters in the same locations, but in a different season. Prochlorococcus dominated the communities in clone libraries of the amplified 16S-23S rRNA internal transcribed spacer (ITS) region. Almost no differences were found between samples from coastal or open-water sites, but a high diversity of Prochlorococcus ecotypes was detected at 100-meter depth in the water column. In addition, an unusual dominance of HL II-related sequences was observed in deeper waters. Our results indicate that the Red Sea harbors diverse Prochlorococcus lineages, but no novel ecotypes, despite its unusual physicochemical properties. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  5. Distribution and diversity of Prochlorococcus ecotypes in the Red Sea

    KAUST Repository

    Shibl, Ahmed A.

    2014-06-19

    Photosynthetic prokaryotes of the genus Prochlorococcus play a major role in global primary production in the world\\'s oligotrophic oceans. A recent study on pelagic bacterioplankton communities in the northern and central Red Sea indicated that the predominant cyanobacterial 16S rRNA gene sequence types were from Prochlorococcus cells belonging to a high-light-adapted ecotype (HL II). In this study, we analyzed microdiversity of Prochlorococcus sp. at multiple depths within and below the euphotic zone in the northern, central, and southern regions of the Red Sea, as well as in surface waters in the same locations, but in a different season. Prochlorococcus dominated the communities in clone libraries of the amplified 16S-23S rRNA internal transcribed spacer (ITS) region. Almost no differences were found between samples from coastal or open-water sites, but a high diversity of Prochlorococcus ecotypes was detected at 100-meter depth in the water column. In addition, an unusual dominance of HL II-related sequences was observed in deeper waters. Our results indicate that the Red Sea harbors diverse Prochlorococcus lineages, but no novel ecotypes, despite its unusual physicochemical properties. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  6. Distribution and diversity of Prochlorococcus ecotypes in the Red Sea.

    Science.gov (United States)

    Shibl, Ahmed A; Thompson, Luke R; Ngugi, David K; Stingl, Ulrich

    2014-07-01

    Photosynthetic prokaryotes of the genus Prochlorococcus play a major role in global primary production in the world's oligotrophic oceans. A recent study on pelagic bacterioplankton communities in the northern and central Red Sea indicated that the predominant cyanobacterial 16S rRNA gene sequence types were from Prochlorococcus cells belonging to a high-light-adapted ecotype (HL II). In this study, we analyzed microdiversity of Prochlorococcus sp. at multiple depths within and below the euphotic zone in the northern, central, and southern regions of the Red Sea, as well as in surface waters in the same locations, but in a different season. Prochlorococcus dominated the communities in clone libraries of the amplified 16S-23S rRNA internal transcribed spacer (ITS) region. Almost no differences were found between samples from coastal or open-water sites, but a high diversity of Prochlorococcus ecotypes was detected at 100-meter depth in the water column. In addition, an unusual dominance of HL II-related sequences was observed in deeper waters. Our results indicate that the Red Sea harbors diverse Prochlorococcus lineages, but no novel ecotypes, despite its unusual physicochemical properties. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  7. Bluff Body Flow Control Using Dielectric Barrier Discharge Plasma Actuators

    Science.gov (United States)

    Thomas, Flint; Kozlov, Alexey

    2008-11-01

    The results of an experimental investigation involving the use of dielectric barrier discharge plasma actuators to control bluff body flow is presented. The motivation for the work is plasma landing gear noise control for commercial transport aircraft. For these flow control experiments, the cylinder in cross-flow is chosen for study since it represents a generic flow geometry that is similar in all essential aspects to a landing gear strut. The current work is aimed both at extending the plasma flow control concept to Reynolds numbers typical of landing approach and take-off and on the development of optimum plasma actuation strategies. The cylinder wake flow with and without actuation are documented in detail using particle image velocimetry (PIV) and constant temperature hot-wire anemometry. The experiments are performed over a Reynolds number range extending to ReD=10^5. Using either steady or unsteady plasma actuation, it is demonstrated that even at the highest Reynolds number Karman shedding is totally eliminated and turbulence levels in the wake decrease by more than 50%. By minimizing the unsteady flow separation from the cylinder and associated large-scale wake vorticity, the radiated aerodynamic noise is also reduced.

  8. Sex-specific roost selection by adult red bats in a diverse forested landscape

    Science.gov (United States)

    Roger W. Perry; Ronald E. Thill; S. Andrew Carter

    2007-01-01

    The eastern red bat (Lasiurus borealis) is a common, widespread species that occurs throughout eastern North America; however, information on potential differences in roost selection between sexes is limited. We studied summer diurnal roosting of adult red bats in a diverse forested landscape to: (1) characterize roosts of adult males and females, (2...

  9. Diversity of Picoeukaryotes at an Oligotrophic Site off the Northern Red Sea Coast

    KAUST Repository

    Espinosa, Francisco Jose Acosta

    2012-05-01

    Picoeukaryotes are protist 3 µm belonging to a wide diversity of taxonomic groups, and they are an important constituent of the ocean microbiota, performing essential ecological roles in marine trophic chains and in nutrient and carbon budgets. Despite this, the true extent of their diversity is currently unknown, and in the last decade molecular surveys have uncovered a substantial number of previously unknown groups from all taxonomic levels. No studies on this group have been done so far on the Red Sea, a unique marine environment characterized by oligotrophic conditions and high irradiance, salinity and water temperature. We sampled the surface waters of a site near the northern Red Sea coast, and analyzed the picoeukaryotic diversity through the construction of PCR clone libraries using the 18S ribosomal gene. The community captured by our library is dominated by three main groups, the alveolates (32%), chlorophytes (32%) and Stramenopiles (20.55%). Members of Radiolaria, Cercozoans and Haptophyta were also found, although in low abundances. Photosynthetic organisms are especially diverse and abundant in the sample, with heterotrophic organism mostly composed by the mostly parasitic novel alveolates and bacterivorous stramenopiles. Novel clades were detected among the Novel Alveolates- II and the photosynthetic stramenopiles taxa, which suggests that they may be part of a number of groups unique to the basin and adapted to the high salinity and temperature conditions. This is the first study done on the Red Sea focusing on the diversity of the complete picoeukaryotic fraction, and provides a stepping stone in the characterization of the picoeukaryotic component of the microbial diversity of the basin.

  10. The blow-off mechanism of a bluff-body stabilized laminar premixed flame

    KAUST Repository

    Kedia, Kushal S.

    2015-04-01

    © 2014 The Combustion Institute. The objective of this work is to investigate the dynamics leading to blow-off of a laminar premixed flame stabilized on a confined bluff-body using high fidelity numerical simulations. We used unsteady, fully resolved, two-dimensional simulations with detailed chemical kinetics and species transport for methane-air combustion. The flame-wall interaction between the hot reactants and the heat conducting bluff-body was accurately captured by incorporating the conjugate heat exchange between them. Simulations showed a shear-layer stabilized flame just downstream of the bluff-body, with a recirculation zone formed by the products of combustion. The flame was negatively stretched along its entire length, primarily dominated by the normal component of the strain. Blow-off was approached by decreasing the mixture equivalence ratio, at a fixed Reynolds number, of the incoming flow. A flame is stable (does not undergo blow-off) when (1) flame displacement speed is equal to the flow speed and (2) the gradient of the flame displacement speed normal to its surface is higher than the gradient of the flow speed along the same direction. As the equivalence ratio is reduced, the difference between the former and the latter shrinks until the dynamic stability condition (2) is violated, leading to blow-off. Blow-off initiates at a location where this is first violated along the flame. Our results showed that this location was far downstream from the flame anchoring zone, near the end of the recirculation zone. Blow-off started by flame pinching separating the flame into an upstream moving (carried within the recirculation zone) and a downstream convecting (detached from the recirculation zone) flame piece. Within the range of operating conditions investigated, the conjugate heat exchange with the bluff-body had no impact on the flame blow-off.

  11. Zooplankton diversity across three Red Sea reefs using pyrosequencing

    KAUST Repository

    Pearman, John K.

    2014-07-30

    Coral reefs are considered among the most diverse ecosystems on Earth, yet little is known about the diversity of plankton in the surrounding water column. Moreover, few studies have utilized genomic methods to investigate zooplankton diversity in any habitat. This study investigated the diversity of taxa by sampling 45 stations around three reef systems in the central/southern Red Sea. The diversity of metazoan plankton was investigated by targeting the 18S rRNA gene and clustering OTUs at 97% sequence similarity. A total of 754 and 854 metazoan OTUs were observed in the data set for the 1380F and 1389F primer sets respectively. The phylum Arthropoda dominated both primer sets accounting for ~60% of reads followed by Cnidaria (~20%). Only about 20% of OTUs were shared between all three reef systems and the relation between geographic distance and Jaccard Similarity measures was not significant. Cluster analysis showed that there was no distinct split between reefs and stations from different reefs clustered together both for metazoans as a whole and for the phyla Arthropoda, Cnidaria and Chordata separately. This suggests that distance may not be a determining factor in the taxonomic composition of stations.

  12. The instability characteristics of lean premixed hydrogen and syngas flames stabilized on meso-scale bluff-body

    KAUST Repository

    Kim, Yu Jeong

    2017-01-05

    Bluff-body flame stabilization has been used as one of main flame stabilization schemes to improve combustion stability in both large and small scale premixed combustion systems. The detailed investigation of instability characteristics is needed to understand flame stability mechanism. Direct numerical simulations are conducted to investigate flame dynamics on the instability of lean premixed hydrogen/air and syngas/air flames stabilized on a meso-scale bluff-body. A two-dimensional channel of 10 mm height and 10 mm length with a square bluff-body stabilizer of 0.5 mm is considered. The height of domain is chosen as an unconfined condition to minimize the effect of the blockage ratio. Flame/flow dynamics are observed by increasing the mean inflow velocity from a steady stable to unsteady asymmetrical instability, followed by blowoff. Detailed observations between hydrogen and syngas flames with a time scale analysis are presented.

  13. Disposal of chemical agents and munitions stored at Pine Bluff Arsenal, Pine Bluff, Arkansas. Final phase 1, Environmental report

    Energy Technology Data Exchange (ETDEWEB)

    Ensminger, J.T.; Hillsman, E.L.; Johnson, R.D.; Morrisey, J.A.; Staub, W.P.; Boston, C.R.; Hunsaker, D.B.; Leibsch, E.; Rickert, L.W.; Tolbert, V.R.; Zimmerman, G.P.

    1991-09-01

    The Pine Bluff Arsenal (PBA) near Pine Bluff, Arkansas, is one of eight continental United States (CONUS) Army installations where lethal unitary chemical agents and munitions are stored and where destruction of agents and munitions is proposed under the Chemical Stockpile Disposal Program (CSDP). The chemical agent inventory at PBA consists of approximately 12%, by weight, of the total US stockpile. The destruction of the stockpile is necessary to eliminate the risk to the public from continued storage and to dispose of obsolete and leaking munitions. In 1988 the US Army issued a Final Programmatic Environmental Impact Statement (FPEIS) for the CSDP that identified on-site disposal of agents and munitions as the environmentally preferred alternative (i.e., the alternative with the least potential to cause significant adverse impacts). The purpose of this report is to examine the proposed implementation of on-site disposal at PBA in light of more recent and more detailed data than those on which the FPEIS is based. New population data were used to compute fatalities using the same computation methods and values for all other parameters as in the FPEIS. Results indicate that all alternatives are indistinguishable when the potential health impacts to the PBA community are considered. However, risks from on-site disposal are in all cases equal to or less than risks from other alternatives. Furthermore, no unique resources with the potential to prevent or delay implementation of on-site disposal at PBA have been identified.

  14. Microbial diversity and metabolite composition of Belgian red-brown acidic ales.

    Science.gov (United States)

    Snauwaert, Isabel; Roels, Sanne P; Van Nieuwerburg, Filip; Van Landschoot, Anita; De Vuyst, Luc; Vandamme, Peter

    2016-03-16

    Belgian red-brown acidic ales are sour and alcoholic fermented beers, which are produced by mixed-culture fermentation and blending. The brews are aged in oak barrels for about two years, after which mature beer is blended with young, non-aged beer to obtain the end-products. The present study evaluated the microbial community diversity of Belgian red-brown acidic ales at the end of the maturation phase of three subsequent brews of three different breweries. The microbial diversity was compared with the metabolite composition of the brews at the end of the maturation phase. Therefore, mature brew samples were subjected to 454 pyrosequencing of the 16S rRNA gene (bacteria) and the internal transcribed spacer region (yeasts) and a broad range of metabolites was quantified. The most important microbial species present in the Belgian red-brown acidic ales investigated were Pediococcus damnosus, Dekkera bruxellensis, and Acetobacter pasteurianus. In addition, this culture-independent analysis revealed operational taxonomic units that were assigned to an unclassified fungal community member, Candida, and Lactobacillus. The main metabolites present in the brew samples were L-lactic acid, D-lactic acid, and ethanol, whereas acetic acid was produced in lower quantities. The most prevailing aroma compounds were ethyl acetate, isoamyl acetate, ethyl hexanoate, and ethyl octanoate, which might be of impact on the aroma of the end-products. Copyright © 2016 Elsevier B.V. All rights reserved.

  15. Genetic diversity of giant clams (Tridacna spp.) and their associated Symbiodinium in the central Red Sea

    KAUST Repository

    Pappas, Melissa

    2017-05-19

    The biodiversity of the Red Sea remains relatively understudied, particularly for invertebrate taxa. Documenting present patterns of biodiversity is essential for better understanding Red Sea reef ecosystems and how these ecosystems may be impacted by stressors (such as fishing and climate change). Several species of giant clams (genus Tridacna) are reported from the Red Sea, although the majority of research effort has occurred in the Gulf of Aqaba. We investigated the genetic diversity (16S rDNA) of the Tridacna species found in the central Saudi Arabian Red Sea. We also investigated the genetic diversity (ITS rDNA) of symbiotic dinoflagellates Symbiodinium associated with these clams. Samples were collected from nine reefs on a cross-shelf gradient near Thuwal, Saudi Arabia. Two species, T. squamosa and T. maxima, were recorded, with the latter being the most abundant. Tridacna squamosina, a species recently reported in the northern Red Sea, was not found, suggesting that this species is not present or is very rare in our study region. All tridacnids sampled were found to harbor Symbiodinium grouped in Clade A, considered an opportunistic, heat-tolerant symbiont group in anemones and corals. The consistent association with Clade A Symbiodinium in central Red Sea tridacnids may reflect the consequence of adaptation to the relatively extreme conditions of the Red Sea. This study contributes to an ever-growing catalog of Red Sea biodiversity and serves as important baseline information for a region experiencing dynamic pressures.

  16. Genetic diversity of giant clams (Tridacna spp.) and their associated Symbiodinium in the central Red Sea

    KAUST Repository

    Pappas, Melissa; He, Song; Hardenstine, Royale; Kanee, Hana; Berumen, Michael L.

    2017-01-01

    The biodiversity of the Red Sea remains relatively understudied, particularly for invertebrate taxa. Documenting present patterns of biodiversity is essential for better understanding Red Sea reef ecosystems and how these ecosystems may be impacted by stressors (such as fishing and climate change). Several species of giant clams (genus Tridacna) are reported from the Red Sea, although the majority of research effort has occurred in the Gulf of Aqaba. We investigated the genetic diversity (16S rDNA) of the Tridacna species found in the central Saudi Arabian Red Sea. We also investigated the genetic diversity (ITS rDNA) of symbiotic dinoflagellates Symbiodinium associated with these clams. Samples were collected from nine reefs on a cross-shelf gradient near Thuwal, Saudi Arabia. Two species, T. squamosa and T. maxima, were recorded, with the latter being the most abundant. Tridacna squamosina, a species recently reported in the northern Red Sea, was not found, suggesting that this species is not present or is very rare in our study region. All tridacnids sampled were found to harbor Symbiodinium grouped in Clade A, considered an opportunistic, heat-tolerant symbiont group in anemones and corals. The consistent association with Clade A Symbiodinium in central Red Sea tridacnids may reflect the consequence of adaptation to the relatively extreme conditions of the Red Sea. This study contributes to an ever-growing catalog of Red Sea biodiversity and serves as important baseline information for a region experiencing dynamic pressures.

  17. A Numerical Study on Premixed Bluff Body Flame of Different Bluff Apex Angle

    Directory of Open Access Journals (Sweden)

    Gelan Yang

    2013-01-01

    Full Text Available In order to investigate effects of apex angle (α on chemically reacting turbulent flow and thermal fields in a channel with a bluff body V-gutter flame holder, a numerical study has been carried out in this paper. With a basic geometry used in a previous experimental study, the apex angle was varied from 45° to 150°. Eddy dissipation concept (EDC combustion model was used for air and propane premixed flame. LES-Smagorinsky model was selected for turbulence. The gird-dependent learning and numerical model verification were done. Both nonreactive and reactive conditions were analyzed and compared. The results show that as α increases, recirculation zone becomes bigger, and Strouhal number increases a little in nonreactive cases while decreases a little in reactive cases, and the increase of α makes the flame shape wider, which will increase the chamber volume heat release ratio and enhance the flame stability.

  18. Diversity of picoeukaryotes at an oligotrophic site off the Northeastern Red Sea Coast.

    KAUST Repository

    Acosta, Francisco

    2013-08-20

    Picoeukaryotes are protists ≤ 3 μm composed of a wide diversity of taxonomic groups. They are an important constituent of the ocean\\'s microbiota and perform essential ecological roles in marine nutrient and carbon cycles. Despite their importance, the true extent of their diversity has only recently been uncovered by molecular surveys that resulted in the discovery of a substantial number of previously unknown groups. No study on picoeukaryote diversity has been conducted so far in the main Red Sea basin-a unique marine environment characterized by oligotrophic conditions, high levels of irradiance, high salinity and increased water temperature.

  19. Relationship of Course Woody Debris to Red-Cockaded Woodpecker Prey Diversity and Abundance

    Energy Technology Data Exchange (ETDEWEB)

    Horn, G.S.

    1999-09-03

    The abundance of diversity of prey commonly used by the red-cockaded woodpecker were monitored in experimental plots in which course woody debris was manipulated. In one treatment, all the woody debris over four inches was removed. In the second treatment, the natural amount of mortality remained intact. The overall diversity of prey was unaffected; however, wood roaches were significantly reduced by removal of woody debris. The latter suggests that intensive utilizations or harvesting practices may reduce foraging.

  20. Mitochondrial genetic diversity of Eurasian red squirrels (Sciurus vulgaris) from Denmark

    DEFF Research Database (Denmark)

    Madsen, Corrie Lynne; Mouatt, Julia Thidamarth Vilstrup; Fernandez Garcia, Rut

    2015-01-01

    Melanistic Eurasian red squirrels Sciurus vulgaris are commonly found on the Danish island of Funen. They are thought to represent native Danish squirrel types and are presently under threat from admixture with introduced red squirrels. In response, a conservation program was started in 2009...... that involves the translocation of melanistic squirrels from Funen to the squirrel-free island of Langeland. Using mitochondrial DNA of 101 historical and modern samples from throughout Denmark, we assess for the first time population structure and mitochondrial genetic diversity of Danish squirrels compared...

  1. New potassium-argon basalt data in relation to the Pliocene Bluff Downs Local Fauna, northern Australia

    International Nuclear Information System (INIS)

    Mackness, B.S.

    2000-01-01

    A new radiometric date of 3.6 Ma for the basalt overlying fossiliferous units of the Allingham Formation, provides a minimum age for the Bluff Downs Local Fauna. Ground studies and interpretation of aerial photography has clarified the volcanic history of the area and a new basalt flow has been identified and named. Although the age of the capping basalt permits a younger age for the Bluff Downs Local Fauna than originally described, the stratigraphy, combined with the interpreted stage of evolution of the fauna, still supports an Early Pliocene age for the site. Copyright (2000) Geological Society of Australia

  2. Bluff body flow and vortex—its application to wind turbines

    Energy Technology Data Exchange (ETDEWEB)

    Ohya, Yuji, E-mail: ohya@riam.kyushu-u.ac.jp [Research Institute for Applied Mechanics, Kyushu University, Kasuga (Japan)

    2014-12-01

    Some interesting phenomena of vortex flows we have found in past experimental research are described. For a given flow configuration, multiple flow patterns can exist and a sudden change from one flow pattern to another can occur. We observed the alternate switching of the flow patterns with irregular periods around a bluff body. The change of vortex flow pattern around a bluff body with geometrical parameters or stratification is not always continuous but often shows a sudden change in the whole flow pattern. Based on our research on vortex flows, an innovative application of the vortex flow to a shrouded wind turbine is made in which the power output of a wind turbine is remarkably enhanced. Unlike the majority of conventional aerodynamic machinery, which tends to minimize vortex shedding, the vortex formation of our ‘brimmed’ shroud plays an important role in capturing and concentrating wind energy. Furthermore, aerodynamic noise is reduced in this design. The blade tip vortex is weakened by a counter-rotating vortex generated along the inner side of the shroud as they travel downstream, making the shrouded wind turbine much quieter than conventional turbines. (paper)

  3. Bluff body flow and vortex—its application to wind turbines

    International Nuclear Information System (INIS)

    Ohya, Yuji

    2014-01-01

    Some interesting phenomena of vortex flows we have found in past experimental research are described. For a given flow configuration, multiple flow patterns can exist and a sudden change from one flow pattern to another can occur. We observed the alternate switching of the flow patterns with irregular periods around a bluff body. The change of vortex flow pattern around a bluff body with geometrical parameters or stratification is not always continuous but often shows a sudden change in the whole flow pattern. Based on our research on vortex flows, an innovative application of the vortex flow to a shrouded wind turbine is made in which the power output of a wind turbine is remarkably enhanced. Unlike the majority of conventional aerodynamic machinery, which tends to minimize vortex shedding, the vortex formation of our ‘brimmed’ shroud plays an important role in capturing and concentrating wind energy. Furthermore, aerodynamic noise is reduced in this design. The blade tip vortex is weakened by a counter-rotating vortex generated along the inner side of the shroud as they travel downstream, making the shrouded wind turbine much quieter than conventional turbines. (paper)

  4. Trees, Shrubs, and Woody Vines of the Bluff Experimental Forest, Warren County, Mississippi

    Science.gov (United States)

    Robert L. Johnson; Elbert L. Little

    1967-01-01

    Nearly 100 species of trees, shrubs, and woody vines grow naturally on the 450-acre Bluff Experimental Forest in west-central Mississippi. This publication lists the plants and provides information on silvical characteristics of the tree species.

  5. Diversity of Flea (Siphonaptera) Parasites on Red Foxes (Vulpes vulpes) in Romania.

    Science.gov (United States)

    Foley, P; Foley, J; Sándor, A D; Ionica, A M; Matei, I A; D'Amico, G; Gherman, C M; Dom A, C; Mihalca, A D

    2017-09-01

    Red foxes (Vulpes vulpes (L.)) are widespread across Europe, tolerant of synanthropic ecosystems, and susceptible to diseases potentially shared with humans and other animals. We describe flea fauna on red foxes in Romania, a large, ecologically diverse country, in part because fleas may serve as an indicator of the risk of spillover of vector-borne disease. We found 912 individual fleas of seven species on the 305 foxes assessed, for an infestation prevalence of 49.5%. Mean flea load per fox was 5.8 (range 0-44 fleas), and flea detections were most abundant in fall and early spring. Fleas included generalists (Ctenocephalides canis (Curtis), 32.6% of all fleas), Ct. felis (Bouché, 0.1%), and Pulex irritans L. (29.9%), the fox specialist Chaetopsylla globiceps (Taschenberg, 32.5%), mesocarnivore fleas Paraceras melis Walker (3.2%) and Ch. trichosa Kohaut (1.5%), and the small mammal flea Ctenophthalmus assimilis (Taschenberg, 0.1%), which is rarely or never reported from carnivores. There were significantly more female than male Ch. globiceps, Ct. canis, and Pu. irritans, and these three species were the most broadly distributed geographically. Diversity indices suggested reduced diversity in mountainous areas above 700 m. When compared to other flea studies on foxes in Europe, Romania had flea diversity near the median of reports, which was unexpected given Romania's high ecological diversity. Notably absent prey specialists, compared to other studies, include Archaeopsylla erinacei (Bouché) and Spilopsyllus cuniculi (Dale). Further studies of possible disease agents in fox fleas could help elucidate possible risks of vector-borne disease in foxes, domestic animals, and humans as well. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  6. The orientation-averaged aspiration efficiency of IOM-like personal aerosol samplers mounted on bluff bodies.

    Science.gov (United States)

    Paik, Samuel Y; Vincent, James H

    2004-01-01

    This paper describes two sets of experiments that were intended to characterize the orientation-averaged aspiration efficiencies of IOM samplers mounted on rotating bluff bodies. IOM samplers were mounted on simplified, three-dimensional rectangular bluff bodies that were rotated horizontally at a constant rate. Orientation-averaged aspiration efficiencies (A360) were measured as a function of Stokes' number (St), velocity ratio (R) and dimension ratio (r). Aspiration efficiency (A) is the efficiency with which particles are transported from the ambient air into the body of a sampler, and A360 is A averaged over all orientations to the wind. St is a dimensionless variable that represents particle inertia, R is the ratio of the air velocity in the freestream and that at the plane of the sampler's entry orifice, and r is the ratio of the sampler's orifice diameter and the bluff body's width. The first set of experiments were instrumental in establishing a hierarchy of effects on orientation-averaged A. It was clear that compared to r, St had a much larger influence on A. It was also clear, however, that the effects of St were overpowered by the effects of R in many cases. As concluded in previous studies, R and St were considered the most important factors in determining A, even for A360. The second set of experiments investigated A360 of IOM samplers for a much wider range of r than examined in previous research. Two important observations were made from the experimental results. One was that the A360 of IOM samplers, as a function of St, did not change for an r-range of 0.066-0.4. This meant that an IOM sampler mounted on a near life-size mannequin would measure the same aerosol concentration as one not mounted on anything. The second observation was that the aspiration efficiency curve of the IOM sampler was close to the inhalability curve. This gave further evidence that the bluff body did not play a major role in influencing A360, as the IOM samplers, in these

  7. Environmental contaminants in shortnose sturgeon from Bears Bluff National Fish Hatchery, Wadmalaw Island, South Carolina

    Data.gov (United States)

    Department of the Interior — The shortnose sturgeon (Acipenser brevirostrum) is a federally‐listed endangered species. In 2008, eleven shortnose sturgeon, reared at the Bears Bluff National Fish...

  8. Dynamics of bluff-body-stabilized lean premixed syngas flames in a meso-scale channel

    KAUST Repository

    Lee, Bok Jik

    2016-07-15

    Direct numerical simulations are conducted to investigate the dynamics of lean premixed syngas flames stabilized by a bluff-body in a meso-scale channel at near blow-off conditions, in order to provide fundamental insights into the physical mechanisms responsible for the critical phenomena. Flames in a two-dimensional meso-scale channel with a square flame holder are adopted as the model configuration, and a syngas mixture at an equivalence ratio of 0.5 with the CO:H ratio of 1 is considered. As the inlet velocity is increased, the initially stable steady flames undergo a transition to an unsteady mode of regular asymmetric fluctuation. When the inlet velocity is further increased, the flame is eventually blown off. Between the regular fluctuation mode and blow-off limit, there exists a narrow range of the inlet velocity where the flames exhibit periodic local extinction and recovery. Approaching further to the blow-off limit, the recovery mode fails to occur but the flame survives as a short kernel attached to the base of the bluff-body, until it is completely extinguished as the attached flames are gradually shrunk towards the bluff-body. The results are systematically compared with the hydrogen flame results reported in our earlier study. Examination of the characteristic time scales of relevant processes provided understanding of key mechanisms responsible for the observed differences, thereby allowing improved description of the local extinction and re-ignition dynamics that are critical to flame stabilization.

  9. Combustion heat release effects on asymmetric vortex shedding from bluff bodies

    Science.gov (United States)

    Cross, Caleb Nathaniel

    2011-07-01

    This thesis describes an investigation of oscillatory combustion processes due to vortex shedding from bluff body flame holders. The primary objective of this study was to elucidate the influence of combustion process heat release upon the Benard-von Karman (BVK) instability in reacting bluff body wakes. For this purpose, spatial and temporal heat release distributions in bluff body-stabilized combustion of liquid Jet-A fuel with high-temperature, vitiated air were characterized over a wide range of operating conditions. Two methods of fuel injection were investigated. In the first method, referred to as close-coupled fuel injection, the fuel was supplied via discrete liquid jets injected perpendicular to the cross-flowing air stream just upstream of the bluff body trailing edge, thereby limiting fuel and air mixing prior to burning. The fuel was introduced well upstream (˜0.5 m) of the bluff body in the second fuel injection mode, resulting in a well-evaporated and mixed reactants stream. The resulting BVK heat release dynamics were compared between these fuel injection modes in order to investigate their dependence upon the spatial distributions of fuel-air ratio and heat release in the reacting wake. When close-coupled fuel injection was used, the BVK heat release dynamics increased in amplitude with increasing global equivalence ratio, reaching a maximum just before globally rich blow out of the combustion process occurred. This was due to a decrease in fuel entrainment into the near-wake as the fuel spray penetrated further into the cross-flow, which reduced the local heat release and equivalence ratio (indicated by CH* and C2*/CH* chemiluminescence, respectively). As a result, the density gradient across the near-wake reaction zone decreased, resulting in less damping of vorticity due to dilatation. In addition, unburned reactants were entrained into the recirculation zone due to the injection of discrete liquid fuel jets in close proximity to the wake. This

  10. Phenotype diversity analysis of red-grained rice landraces from Yuanyang Hani's terraced fields, China

    Science.gov (United States)

    Li, Lianjie; Cheng, Long

    2017-10-01

    There are many areas in the world have terraced fields, Yuanyang Rani's terraced fields are examples in the world, and their unique ecological diversity is beyond other terraced fields, rice landraces are very rich. In order to provide useful information for protection and utilization of red-grained rice landraces from Rani's terraced fields, 61 red-grained rice landraces were assessed based 20 quantitative traits. Principal component analysis (PCA) suggested that 20 quantitative characters could be simplified to seven principal components, and their accumulative contribution ration amounted to 78.699%. The first principal component (PC1) explained 18.375% of the total variance, which was contributed by filled grain number, 1000-grain weight, spikelets per panicle, secondary branch number, grain length, and grain thickness. PC2 accounted for 16.548% of the variance and featured flag leaf width, flag leaf area, panicle neck length and primary branch number. These traits were the most effective parameters to discriminate individuals. At the request of the proceedings editor and with the approval of all authors, article 040111 titled, "Phenotype diversity analysis of red-grained rice landraces from Yuanyang Hani's terraced fields, China," is being retracted from the public record due to the fact that it is a duplication of article 040110 published in the same volume.

  11. Late Devonian spermatophyte diversity and paleoecology at Red Hill, north-central Pennsylvania, USA

    Energy Technology Data Exchange (ETDEWEB)

    Cressler, Walter L. III. [Francis Harvey Green Library, 29 West Rosedale Avenue, West Chester University, West Chester, PA, 19383 (United States); Prestianni, Cyrille [Universite de Liege, Boulevard du Rectorat B18, Liege 4000 (Belgium); LePage, Ben A. [The Academy of Natural Sciences, 1900 Benjamin Franklin Parkway, Philadelphia, PA, 19103 and PECO Energy Company, 2301 Market Avenue, S9-1, Philadelphia, PA 19103 (United States)

    2010-08-01

    Early spermatophytes have been discovered at Red Hill, a Late Devonian (Famennian) fossil locality in north-central Pennsylvania, USA. The Red Hill locality contains an Archaeopteris-dominated flora within an outcrop of the Duncannon Member of the Catskill Formation. Palynological analyses of the plant fossil-bearing horizons within the Red Hill outcrop indicate deposition within the VCo palynozone. This is the earliest time horizon known to contain evidence for spermatophytes, and is contemporaneous with well-known spermatophyte-bearing deposits in West Virginia and Belgium. Some of the spermatophyte material from Red Hill compares well with Aglosperma sp., previously known as isolated ovules from the latest Devonian of South Wales and England, thus extending its geographic and stratigraphic range. Red Hill specimens of Aglosperma sp. occur both as isolated ovules and attached to dichotomously forking axes. Additional spermatophyte cupules discovered at Red Hill are morphologically similar to those of the previously described Late Devonian spermatophytes Elkinsia Rothwell, Scheckler, et Gillespie, Moresnetia Stockmans, and Xenotheca Arber et Goode. Some of the Red Hill cupule complexes are distinct from the aforementioned taxa in consisting of slender dichotomously forking axes terminating in paired cupules with highly fused and symmetric cupule quadrant lobes. The distinctive nature of these Red Hill specimens warrants the creation of Duodimidia pfefferkornii Cressler, Prestianni, et LePage gen. et sp. nov. Plant fossil remains with sphenopteroid foliage are also present at Red Hill, possibly attributable to the spermatophytes. Previous systematic sampling of the rich plant-fossil bearing layer at Red Hill and analysis of its floristic diversity and abundance as well as the presence and absence of charcoal suggests a pattern of floral turnover from a local-scale Rhacophyton-dominated community to spermatophyte colonization following disturbance by wildfires

  12. Orientation of bluff body for designing efficient energy harvesters from vortex-induced vibrations

    International Nuclear Information System (INIS)

    Dai, H. L.; Abdelkefi, A.; Yang, Y.; Wang, L.

    2016-01-01

    The characteristics and performances of four distinct vortex-induced vibrations (VIVs) piezoelectric energy harvesters are experimentally investigated and compared. The difference between these VIV energy harvesters is the installation of the cylindrical bluff body at the tip of cantilever beam with different orientations (bottom, top, horizontal, and vertical). Experiments show that the synchronization regions of the bottom, top, and horizontal configurations are almost the same at low wind speeds (around 1.5 m/s). The vertical configuration has the highest wind speed for synchronization (around 3.5 m/s) with the largest harvested power, which is explained by its highest natural frequency and the smallest coupled damping. The results lead to the conclusion that to design efficient VIV energy harvesters, the bluff body should be aligned with the beam for low wind speeds (<2 m/s) and perpendicular to the beam at high wind speeds (>2 m/s)

  13. Blowoff dynamics of bluff body stabilized turbulent premixed flames

    Energy Technology Data Exchange (ETDEWEB)

    Chaudhuri, Swetaprovo; Kostka, Stanislav; Renfro, Michael W.; Cetegen, Baki M. [Department of Mechanical Engineering, University of Connecticut, 191 Auditorium Road, U-3139, Storrs, CT 06269 (United States)

    2010-04-15

    This article concerns the flame dynamics of a bluff body stabilized turbulent premixed flame as it approaches lean blowoff. Time resolved chemiluminescence imaging along with simultaneous particle image velocimetry and OH planar laser-induced fluorescence were utilized in an axisymmetric bluff body stabilized, propane-air flame to determine the sequence of events leading to blowoff and provide a quantitative analysis of the experimental results. It was found that as lean blowoff is approached by reduction of equivalence ratio, flame speed decreases and the flame shape progressively changes from a conical to a columnar shape. For a stably burning conical flame away from blowoff, the flame front envelopes the shear layer vortices. Near blowoff, the columnar flame front and shear layer vortices overlap to induce high local stretch rates that exceed the extinction stretch rates instantaneously and in the mean, resulting in local flame extinction along the shear layers. Following shear layer extinction, fresh reactants can pass through the shear layers to react within the recirculation zone with all other parts of the flame extinguished. This flame kernel within the recirculation zone may survive for a few milliseconds and can reignite the shear layers such that the entire flame is reestablished for a short period. This extinction and reignition event can happen several times before final blowoff which occurs when the flame kernel fails to reignite the shear layers and ultimately leads to total flame extinguishment. (author)

  14. Genetic diversity and relatedness among seven red deer (Cervus elaphus populations

    Directory of Open Access Journals (Sweden)

    Lenka Maršálková

    2014-02-01

    Full Text Available Deer (Cervidae recently belongs to the most important species. The aim of presenting study was evaluation of genetic diversity and relationship within and among seven red deer populations from different origins - Czech Republic, Hungary, hybrids Hungary x New Zealand, Lithuania, New Zealand, Poland and Slovak Republic. This study was conducted to determine the levels of genetic variability and relationships among deer populations from a total of 637 animals originating from seven countries Czech Republic (50, Hungary (35, Hungary x New Zealand hybrids (67, Lithuania (26, New Zealand (82, Poland (347 and Slovak Republic (30.  We used the hair bulbs as a source of DNA.  In total, 213 alleles were observed from the 10 loci surveyed. The number of alleles per locus ranged from 11 (IOBT965 to 35 (T156, RT13. Genetic diversity and relatedness among red deer populations has been performed on a total of 637 animals. A panel of 10 microsatellite markers used in deer were optimized. On the basis of this panel of microsatellites we were investigated genetic variability and relationships by using statistical and graphical programmes. We evaluated how close populations are to each other and their genetic admixture. Molecular genetic data combined with evaluation in statistical programmes could lead to a complex view of populations. 

  15. APPLICATION OPENFOAM TO STUDY THE EFFECT OF GEOMETRICAL PARAMETERS ON THE AERODYNAMIC CHARACTERISTICS OF BLUFF BODIES

    Directory of Open Access Journals (Sweden)

    V. V. Efimov

    2014-01-01

    Full Text Available Justification of possibility of application of an OpenFOAM package for obtaining aerodynamic characteristics of bluff bodies and studying of their dependence on geometrical parameters.

  16. 76 FR 20310 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2011-04-12

    ...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's Perspective, (5) Project Presentations, (6) General..., 1135 Lincoln Street, Red Bluff, CA. Individuals wishing to speak or propose agenda items must send...

  17. Prey diversity is affected by climate and differs between age classes in the Red-backed Shrike (Lanius collurio)

    DEFF Research Database (Denmark)

    Pedersen, Lykke; Geertsma, Marten; Tøttrup, Anders P.

    2012-01-01

    -backed Shrike (Lanius collurio) populations in Denmark, based onmore than 11,000 prey items covering seven years.We found a negative correlation between prey diversity and temperature, indicating that Red-backed Shrikes feed on preferred prey items in warmer summers (low diversity)while forced to feed...

  18. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

    KAUST Repository

    Lee, Onon

    2010-11-18

    Marine sponges are associated with a remarkable array of microorganisms. Using a tag pyrosequencing technology, this study was the first to investigate in depth the microbial communities associated with three Red Sea sponges, Hyrtios erectus, Stylissa carteri and Xestospongia testudinaria. We revealed highly diverse sponge-associated bacterial communities with up to 1000 microbial operational taxonomic units (OTUs) and richness estimates of up to 2000 species. Altogether, 26 bacterial phyla were detected from the Red Sea sponges, 11 of which were absent from the surrounding sea water and 4 were recorded in sponges for the first time. Up to 100 OTUs with richness estimates of up to 300 archaeal species were revealed from a single sponge species. This is by far the highest archaeal diversity ever recorded for sponges. A non-negligible proportion of unclassified reads was observed in sponges. Our results demonstrated that the sponge-associated microbial communities remained highly consistent in the same sponge species from different locations, although they varied at different degrees among different sponge species. A significant proportion of the tag sequences from the sponges could be assigned to one of the sponge-specific clusters previously defined. In addition, the sponge-associated microbial communities were consistently divergent from those present in the surrounding sea water. Our results suggest that the Red Sea sponges possess highly sponge-specific or even sponge-species-specific microbial communities that are resistant to environmental disturbance, and much of their microbial diversity remains to be explored. © 2011 International Society for Microbial Ecology All rights reserved.

  19. Experiments and Large-Eddy Simulations of acoustically forced bluff-body flows

    Energy Technology Data Exchange (ETDEWEB)

    Ayache, S.; Dawson, J.R.; Triantafyllidis, A. [Department of Engineering, University of Cambridge (United Kingdom); Balachandran, R. [Department of Mechanical Engineering, University College London (United Kingdom); Mastorakos, E., E-mail: em257@eng.cam.ac.u [Department of Engineering, University of Cambridge (United Kingdom)

    2010-10-15

    The isothermal air flow behind an enclosed axisymmetric bluff body, with the incoming flow being forced by a loudspeaker at a single frequency and with large amplitude, has been explored with high data-rate Laser-Doppler Anemometry measurements and Large-Eddy Simulations. The comparison between experiment and simulations allows a quantification of the accuracy of LES for turbulent flows with periodicity and the results provide insights into the structure of flows relevant to combustors undergoing self-excited oscillations. At low forcing frequencies, the whole flow pulsates with the incoming flow, although at a phase lag that depends on spatial location. At high forcing frequencies, vortices are shed from the bluff body and the recirculation zone, as a whole, pulsates less. Despite the fact that the incoming flow has an oscillation that is virtually monochromatic, the velocity spectra show peaks at various harmonics, whose relative magnitudes vary with location. A sub-harmonic peak is also observed inside the recirculation zone possibly caused by merging of the shed vortices. The phase-averaged turbulent fluctuations show large temporal and spatial variations. The LES reproduces reasonably accurately the experimental findings in terms of phase-averaged mean and r.m.s. velocities, vortex formation, and spectral peaks.

  20. Experiments and Large-Eddy Simulations of acoustically forced bluff-body flows

    International Nuclear Information System (INIS)

    Ayache, S.; Dawson, J.R.; Triantafyllidis, A.; Balachandran, R.; Mastorakos, E.

    2010-01-01

    The isothermal air flow behind an enclosed axisymmetric bluff body, with the incoming flow being forced by a loudspeaker at a single frequency and with large amplitude, has been explored with high data-rate Laser-Doppler Anemometry measurements and Large-Eddy Simulations. The comparison between experiment and simulations allows a quantification of the accuracy of LES for turbulent flows with periodicity and the results provide insights into the structure of flows relevant to combustors undergoing self-excited oscillations. At low forcing frequencies, the whole flow pulsates with the incoming flow, although at a phase lag that depends on spatial location. At high forcing frequencies, vortices are shed from the bluff body and the recirculation zone, as a whole, pulsates less. Despite the fact that the incoming flow has an oscillation that is virtually monochromatic, the velocity spectra show peaks at various harmonics, whose relative magnitudes vary with location. A sub-harmonic peak is also observed inside the recirculation zone possibly caused by merging of the shed vortices. The phase-averaged turbulent fluctuations show large temporal and spatial variations. The LES reproduces reasonably accurately the experimental findings in terms of phase-averaged mean and r.m.s. velocities, vortex formation, and spectral peaks.

  1. Dynamics of bluff-body-stabilized premixed hydrogen/air flames in a narrow channel

    KAUST Repository

    Lee, Bok Jik

    2015-06-01

    Two-dimensional direct numerical simulations were conducted for bluff-body stabilized flames of a lean hydrogen/air mixture at near-blowoff conditions in a meso-scale channel. Parametric simulations were conducted by incrementally varying the inflow velocity in the vicinity of the blowoff limit, and the corresponding flame response was monitored. The present study is a showcase of combustion DNS with embedded boundary representation, and full demonstration of the detailed visualization of the near-blowoff flame characteristics. As the inflow velocity approaches blowoff limit, the flame dynamics exhibit a complex sequence of events, such as periodic local extinction and recovery, and regrowth of the bulk flame by the flame segments attached behind the bluff-body. The total extinction is observed as the attached flames shrink down and are no longer able to regrow the bulk flames. Despite the disparity in the physical scale under study, the observed sequence of the extinction pathway shows a strong similarity with experimental observations at larger scale combustion systems. © 2015 The Combustion Institute.

  2. Alteration and geochemical zoning in Bodie Bluff, Bodie mining district, eastern California

    Science.gov (United States)

    Herrera, P.A.; Closs, L.G.; Silberman, M.L.

    1993-01-01

    Banded, epithermal quartz-adularia veins have produced about 1.5 million ounces of gold and 7 million ounces of silver from the Bodie mining district, eastern California. The veins cut dacitic lava flows, pyroclastic rocks and intrusions. Sinter boulders occur in a graben structure at the top of Bodie Bluff and fragments of sinter and mineralized quartz veins occur in hydrothermal breccias nearby. Explosive venting evidently was part of the evolution of the ore-forming geothermal systems which, at one time, must had reached the paleosurface. Previous reconnaissance studies at Bodie Bluff suggested that the geometry of alteration mineral assemblages and distribution of some of the major and trace elements throughout the system correspond to those predicted by models of hot-spring, volcanic rock hosted precious metal deposits (Silberman, 1982; Silberman and Berger, 1985). The current study was undertaken to evaluate these sugestions further. About 500 samples of quartz veins and altered rocks, including sinter, collected over a vertical extent of 200 meters within Bodie Bluff were petrographically examined and chemically analyzed for trace elements by emission spectrographic and atomic absorption methods. Sixty-five samples were analyzed for major elements by X-ray fluorescence methods. The results of these analyses showed that, in general, alteration mineral assemblage and vertical geochemical zoning patterns follow those predicted for hot-spring deposits, but that geochemical zoning patterns for sinter and quartz veins (siliceous deposits), and altered wall rocks are not always similar. The predicted depth-concentration patterns for some elements, notably Au, Ag, Hg, and Tl in quartz veins, and Hg, As and Ag in wall rocks were not as expected, or were perturbed by the main ore producing zone. For both quartz veins and altered wall rocks, the main ore zone had elevated metal contents. Increased concentration of many of these elements could indicate proximity to this

  3. 75 FR 55738 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2010-09-14

    ... Voting, (7) Next Agenda. DATES: The meeting will be held on September 21, 2010 from 9 a.m. and end at...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval... Street, Red Bluff, CA. Individuals wishing to speak or propose agenda items must send their names and...

  4. Results of hydrologic monitoring on landslide-prone coastal bluffs near Mukilteo, Washington

    Science.gov (United States)

    Smith, Joel B.; Baum, Rex L.; Mirus, Benjamin B.; Michel, Abigail R.; Stark, Ben

    2017-08-31

    A hydrologic monitoring network was installed to investigate landslide hazards affecting the railway corridor along the eastern shore of Puget Sound between Seattle and Everett, near Mukilteo, Washington. During the summer of 2015, the U.S. Geological Survey installed monitoring equipment at four sites equipped with instrumentation to measure rainfall and air temperature every 15 minutes. Two of the four sites are installed on contrasting coastal bluffs, one landslide scarred and one vegetated. At these two sites, in addition to rainfall and air temperature, volumetric water content, pore pressure, soil suction, soil temperature, and barometric pressure were measured every 15 minutes. The instrumentation was designed to supplement landslide-rainfall thresholds developed by the U.S. Geological Survey with a long-term goal of advancing the understanding of the relationship between landslide potential and hydrologic forcing along the coastal bluffs. Additionally, the system was designed to function as a prototype monitoring system to evaluate criteria for site selection, instrument selection, and placement of instruments. The purpose of this report is to describe the monitoring system, present the data collected since installation, and describe significant events represented within the dataset, which is published as a separate data release. The findings provide insight for building and configuring larger, modular monitoring networks.

  5. Modeling 3-D Slope Stability of Coastal Bluffs Using 3-D Ground-Water Flow, Southwestern Seattle, Washington

    Science.gov (United States)

    Brien, Dianne L.; Reid, Mark E.

    2007-01-01

    Landslides are a common problem on coastal bluffs throughout the world. Along the coastal bluffs of the Puget Sound in Seattle, Washington, landslides range from small, shallow failures to large, deep-seated landslides. Landslides of all types can pose hazards to human lives and property, but deep-seated landslides are of significant concern because their large areal extent can cause extensive property damage. Although many geomorphic processes shape the coastal bluffs of Seattle, we focus on large (greater than 3,000 m3), deepseated, rotational landslides that occur on the steep bluffs along Puget Sound. Many of these larger failures occur in advance outwash deposits of the Vashon Drift (Qva); some failures extend into the underlying Lawton Clay Member of the Vashon Drift (Qvlc). The slope stability of coastal bluffs is controlled by the interplay of three-dimensional (3-D) variations in gravitational stress, strength, and pore-water pressure. We assess 3-D slope-stability using SCOOPS (Reid and others, 2000), a computer program that allows us to search a high-resolution digital-elevation model (DEM) to quantify the relative stability of all parts of the landscape by computing the stability and volume of thousands of potential spherical failures. SCOOPS incorporates topography, 3-D strength variations, and 3-D pore pressures. Initially, we use our 3-D analysis methods to examine the effects of topography and geology by using heterogeneous material properties, as defined by stratigraphy, without pore pressures. In this scenario, the least-stable areas are located on the steepest slopes, commonly in Qva or Qvlc. However, these locations do not agree well with observations of deep-seated landslides. Historically, both shallow colluvial landslides and deep-seated landslides have been observed near the contact between Qva and Qvlc, and commonly occur in Qva. The low hydraulic conductivity of Qvlc impedes ground-water flow, resulting in elevated pore pressures at the

  6. Reducing the pressure drag of a D-shaped bluff body using linear feedback control

    Science.gov (United States)

    Dalla Longa, L.; Morgans, A. S.; Dahan, J. A.

    2017-12-01

    The pressure drag of blunt bluff bodies is highly relevant in many practical applications, including to the aerodynamic drag of road vehicles. This paper presents theory revealing that a mean drag reduction can be achieved by manipulating wake flow fluctuations. A linear feedback control strategy then exploits this idea, targeting attenuation of the spatially integrated base (back face) pressure fluctuations. Large-eddy simulations of the flow over a D-shaped blunt bluff body are used as a test-bed for this control strategy. The flow response to synthetic jet actuation is characterised using system identification, and controller design is via shaping of the frequency response to achieve fluctuation attenuation. The designed controller successfully attenuates integrated base pressure fluctuations, increasing the time-averaged pressure on the body base by 38%. The effect on the flow field is to push the roll-up of vortices further downstream and increase the extent of the recirculation bubble. This control approach uses only body-mounted sensing/actuation and input-output model identification, meaning that it could be applied experimentally.

  7. Seasonal electrical resistivity surveys of a coastal bluff, Barter Island, North Slope Alaska

    Science.gov (United States)

    Swarzenski, Peter W.; Johnson, Cordell; Lorenson, Thomas; Conaway, Christopher H.; Gibbs, Ann E.; Erikson, Li; Richmond, Bruce M.; Waldrop, Mark P.

    2016-01-01

    Select coastal regions of the North Slope of Alaska are experiencing high erosion rates that can be attributed in part to recent warming trends and associated increased storm intensity and frequency. The upper sediment column of the coastal North Slope of Alaska can be described as continuous permafrost underlying a thin (typically less than 1–2 m) active layer that responds variably to seasonal thaw cycles. Assessing the temporal and spatial variability of the active layer and underlying permafrost is essential to better constrain how heightened erosion may impact material fluxes to the atmosphere and the coastal ocean, and how enhanced thaw cycles may impact the stability of the coastal bluffs. In this study, multi-channel electrical resistivity tomography (ERT) was used to image shallow subsurface features of a coastal bluff west of Kaktovik, on Barter Island, northeast Alaska. A comparison of a suite of paired resistivity surveys conducted in early and late summer 2014 provided detailed information on how the active layer and permafrost are impacted during the short Arctic summer. Such results are useful in the development of coastal resilience models that tie together fluvial, terrestrial, climatic, geologic, and oceanographic forcings on shoreline stability.

  8. Monitoring of populations and productivity of seabirds at St. George Island, Cape Peirce, and Bluff, Alaska, 1989. Final report

    International Nuclear Information System (INIS)

    Mendenhall, V.M.

    1991-04-01

    In recent years, although descriptive studies have continued, the emphasis on population monitoring of seabirds has increased. Commercial uses of the Continental Shelf of the Bering and Chukchi Seas, including oil and gas development, subsurface placer mining, and commercial fishing, carry the potential for adverse pressures on seabird populations. Populations and productivity of seabirds were monitored in 1989 at three Bering Sea colonies: St. George, Cape Peirce, and Bluff. Murres and black-legged kittiwakes were monitored at all colonies to facilitate intercolony comparisons. These species were selected because they are relatively easy to study, numerous, sensitive to potential impacts of development, and widely distributed. Red legged kittiwakes also were monitored at St. George because of concern for the world status of the species. Methods were standardized among the three colonies to facilitate comparisons among colonies and years. Observations of productivity began at the time nests were established and continued until most young had fledged. Kittiwake nests and murre breeding sites used for estimation of productivity were mapped on photographs or sketches and the fate of each was recorded

  9. Secondary sulfate minerals from Alum Cave Bluff: Microscopy and microanalysis

    Energy Technology Data Exchange (ETDEWEB)

    Lauf, R.J.

    1997-07-01

    Microcrystals of secondary sulfate minerals from Alum Cave Bluff, Great Smoky Mountains National Park, were examined by scanning electron microscopy and identified by X-ray fluorescence (XRF) in the SEM. Among the samples the author discovered three new rare-earth sulfates: coskrenite-(Ce), levinsonite-(Y), and zugshunstite-(Ce). Other minerals illustrated in this report include sulfur, tschermigite, gypsum, epsomite, melanterite, halotrichite, apjohnite, jarosite, slavikite, magnesiocopiapite, and diadochite. Additional specimens whose identification is more tentative include pickeringite, aluminite, basaluminite, and botryogen. Alum Cave is a ``Dana locality`` for apjohnite and potash alum, and is the first documented North American occurrence of slavikite.

  10. Calculations of the flow past bluff bodies, including tilt-rotor wing sections at alpha = 90 deg

    Science.gov (United States)

    Raghavan, V.; Mccroskey, W. J.; Baeder, J. D.; Van Dalsem, W. R.

    1990-01-01

    An attempt was made to model in two dimensions the effects of rotor downwash on the wing of the tilt-rotor aircraft and to compute the drag force on airfoils at - 90 deg angle of attack, using a well-established Navier-Stokes code. However, neither laminar nor turbulent calculations agreed well with drag and base-pressure measurements at high Reynolds numbers. Therefore, further efforts were concentrated on bluff-body flows past various shapes at low Reynolds numbers, where a strong vortex shedding is observed. Good results were obtained for a circular cylinder, but the calculated drag of a slender ellipse at right angles to the freestream was significantly higher than experimental values reported in the literature for flat plates. Similar anomalous results were obtained on the tilt-rotor airfoils, although the qualitative effects of flap deflection agreed with the wind tunnel data. The ensemble of results suggest that there may be fundamental differences in the vortical wakes of circular cylinders and noncircular bluff bodies.

  11. Segmenting wine markets with diverse price functions: Evidence from California red and white wines sold in British Columbia

    Directory of Open Access Journals (Sweden)

    Richard Carew

    2017-06-01

    Full Text Available Previous hedonic price studies on wine market segments, exploring diverse price functions, are constrained by pre-determined price breakpoints, the total number of segments, or both. Using British Columbia Liquor Distribution Branch (BCLDB retail price data of California red and white wines, this study adopts an endogenous approach to explore the total number of market segments and identify breakpoints in price dispersion simultaneously. Results show that red and white California wines are grouped into two (breaking at Can$14 per bottle and three (breaking at Can$16 and $30 per bottle price segments, respectively. Also, implicit prices of wine attributes such as grape variety and geographic origin differ for red and white wines across market segments.

  12. Consistent variability in beta-diversity patterns contrasts with changes in alpha-diversity along an onshore to offshore environmental gradient: the case of Red Sea soft-bottom macrobenthos

    KAUST Repository

    Alsaffar, Zahra Hassan Ali

    2017-09-30

    Patterns of variability in diversity (alpha and beta), abundance, and community structure of soft-bottom macrobenthic assemblages were investigated across an inshore/offshore environmental gradient in the central Red Sea. A total of three distinct soft-substrate biotopes were identified through multivariate techniques: seagrass meadows, nearshore, and offshore. While the seagrass biotope was associated with higher organic matter content, the two coastal biotopes presented higher redox potential in the sediments and dissolved oxygen in the water. Depth and medium sand increased toward the offshore, while the percentage of fine particles was a determinant of nearshore communities. Regardless of the prevailing environmental conditions, the three biotopes were characterized by high numbers of exclusive taxa, most of which were singletons. Changes in species richness were not related to depth or organic matter, peaking at intermediate depths (nearshore). However, the number of taxa increased exponentially with abundance. On the other hand, density decreased logarithmically with depth and organic matter in sediments, probably linked to a reduced availability of food. One of the most conspicuous features of the macrobenthic assemblages inhabiting soft substrates in the central oligotrophic Red Sea is the low level of dominance resulting from a high species richness: abundance ratio. Despite the differences observed for alpha-diversity across the three biotopes, beta-diversity patterns were rather consistent. These findings suggest that mechanisms driving biodiversity are similar across the depth gradient. The partitioning of beta-diversity also show that assemblages are mainly driven by the substitution of species (turnover or replacement), most likely as a result of environmental filtering. The heterogeneity of the seafloor in shallow waters of the Red Sea promoted by the co-existence of coral reefs inter-spaced by sedimentary habitats may increase the regional pool of

  13. Controlled Wake of a Moving Axisymmetric Bluff Body

    Science.gov (United States)

    Lee, E.; Vukasinovic, B.; Glezer, A.

    2017-11-01

    The aerodynamic loads exerted on a wire-mounted axisymmetric bluff body in prescribed rigid motion are controlled by fluidic manipulation of its near wake. The body is supported by a six-degree of freedom eight-wire traverse and its motion is controlled using a dedicated servo actuator and inline load cell for each wire. The instantaneous aerodynamic forces and moments on the moving body are manipulated by controlled interactions of an azimuthal array of integrated synthetic jet actuators with the cross flow to induce localized flow attachment over the body's aft end and thereby alter the symmetry of the wake. The coupled interactions between the wake structure and the effected aerodynamic loads during prescribed time-periodic and transitory (gust like) motions are investigated with emphasis on enhancing or diminishing the loads for maneuver control, and decoupling the body's motion from its far wake.

  14. Entomologic investigations of an epidemic of St. Louis encephalitis in Pine Bluff, Arkansas, 1991.

    Science.gov (United States)

    Savage, H M; Smith, G C; Moore, C G; Mitchell, C J; Townsend, M; Marfin, A A

    1993-07-01

    An epidemic of St. Louis encephalitis (SLE) occurred in Jefferson County, Arkansas during July-August 1991. At least 26 human cases were involved, with 25 cases in the town of Pine Bluff. Twelve isolates of SLE virus were obtained from mosquitoes collected in Pine Bluff between August 13 and 24: 11 from pools of Culex pipiens quinquefasciatus, resulting in a minimum infection rate of 1.6 per 1,000 (n = 6,768) for this subspecies, and one isolate from a pool of 22 mosquitoes identified as Cx. (Culex) spp. Three of the SLE-positive pools, two from Cx. p. quinquefasciatus and one from Cx. (Cux.) spp., also yielded isolates of Flanders virus. Larval surveys resulted in the collection of seven species in four genera from 28 larva-positive habitats and the identification of one significant site of Cx. p. quinquefasciatus production. Ecologic assessments conducted at 12 randomly selected residences resulted in the identification of 17 larva-positive habitats, for an average mosquito-positive habitat rate of 1.4 per residence, and a Cx. p. quinquefasciatus larva-positive habitat rate of 0.6 per residence. Aedes albopictus and Cx. p. quinquefasciatus were the species most frequently encountered in larval surveys in residential neighborhoods.

  15. Do species conservation assessments capture genetic diversity?

    Directory of Open Access Journals (Sweden)

    Malin C. Rivers

    2014-12-01

    Full Text Available The best known system for classifying threat status of species, the IUCN Red List, currently lacks explicit considerations of genetic diversity, and consequently may not account for potential adaptation of species to future environmental change. To address this gap, we integrate range-wide genetic analysis with IUCN Red List assessments.We calculated the loss of genetic diversity under simulated range loss for species of Delonix (Leguminosae. Simulated range loss involved random loss of populations and was intended to model ongoing habitat destruction. We found a strong relationship between loss of genetic diversity and range. Moreover, we found correspondence between levels of genetic diversity and thresholds for ‘non-threatened’ versus ‘threatened’ IUCN Red List categories.Our results support the view that current threat thresholds of the IUCN Red List criteria reflect genetic diversity, and hence evolutionary potential; although the genetic diversity distinction between threatened categories was less evident. Thus, by supplementing conventional conservation assessments with genetic data, new insights into the biological robustness of IUCN Red List assessments for targeted conservation initiatives can be achieved. Keywords: Conservation assessment, Conservation genetics, Extinction risk, Genetic diversity, IUCN Red List, Range

  16. NEAR-BLOWOFF DYNAMICS OF BLUFF-BODY-STABILIZED PREMIXED HYDROGEN/AIR FLAMES IN A NARROW CHANNEL

    KAUST Repository

    Lee, Bok Jik

    2015-06-07

    The flame stability is known to be significantly enhanced when the flame is attached to a bluff-body. The main interest of this study is on the stability of the flame in a meso-scale channel, considering applications such as combustion-based micro power generators. We investigate the dynamics of lean premixed hydrogen/air flames stabilized behind a square box in a two-dimensional meso-scale channel with high-fidelity numerical simulations. Characteristics of both non-reacting flows and reacting flows over the bluff-body are studied for a range of the mean inflow velocity. The flame stability in reacting flows is investigated by ramping up the mean inflow velocity step by step. As the inlet velocity is increased, the initially stable steady flames undergo a transition to an unsteady mode of regular asymmetric fluctuation. When the inlet velocity is further increased, the flame is eventually blown off. Between the regular fluctuation mode and blowoff limit, there exists a narrow range of the inlet velocity where the flames exhibit periodic local extinction and recovery. Approaching further to blowoff limit, the local extinction and recovery becomes highly transient and a failure of recovery leads blowoff and extinction of the flame kernel.

  17. Application of porous material to reduce aerodynamic sound from bluff bodies

    International Nuclear Information System (INIS)

    Sueki, Takeshi; Takaishi, Takehisa; Ikeda, Mitsuru; Arai, Norio

    2010-01-01

    Aerodynamic sound derived from bluff bodies can be considerably reduced by flow control. In this paper, the authors propose a new method in which porous material covers a body surface as one of the flow control methods. From wind tunnel tests on flows around a bare cylinder and a cylinder with porous material, it has been clarified that the application of porous materials is effective in reducing aerodynamic sound. Correlation between aerodynamic sound and aerodynamic force fluctuation, and a surface pressure distribution of cylinders are measured to investigate a mechanism of aerodynamic sound reduction. As a result, the correlation between aerodynamic sound and aerodynamic force fluctuation exists in the flow around the bare cylinder and disappears in the flow around the cylinder with porous material. Moreover, the aerodynamic force fluctuation of the cylinder with porous material is less than that of the bare cylinder. The surface pressure distribution of the cylinder with porous material is quite different from that of the bare cylinder. These facts indicate that aerodynamic sound is reduced by suppressing the motion of vortices because aerodynamic sound is induced by the unstable motion of vortices. In addition, an instantaneous flow field in the wake of the cylinder is measured by application of the PIV technique. Vortices that are shed alternately from the bare cylinder disappear by application of porous material, and the region of zero velocity spreads widely behind the cylinder with porous material. Shear layers between the stationary region and the uniform flow become thin and stable. These results suggest that porous material mainly affects the flow field adjacent to bluff bodies and reduces aerodynamic sound by depriving momentum of the wake and suppressing the unsteady motion of vortices. (invited paper)

  18. Experimental and Numerical Investigation of Flow Structures around Cylindrical Bluff Bodies

    Directory of Open Access Journals (Sweden)

    Yagmur Sercan

    2015-01-01

    Full Text Available The understanding and quantitative prediction of velocity and pressure fluctuations in turbulent flows around such bluff bodies have been evolving over the years. The main aim of the present work is to investigate experimentally and numerically the flow field in the wake region of different bluff bodies such as circular, square and triangle cross section cylinders placed horizontally perpendicular to the uniform flow. The experimental studies were performed by Particle Image Velocimetry (PIV method in an open water channel at Reynolds numbers 5000 and 10000 defined according to the characteristic lengths of the cylinders in the facilities of Selcuk University of Advanced Technology Research and Application Center in Turkey. The experimental results are compared to the numerical results obtained by means of transient simulation with LES turbulence model of ANSYS-Fluent Software. It is shown that the numerical and experimental results have a good agreement in respect of the instantaneous and time-averaged flow field patterns of vorticity, velocity component streamwise direction and streamline topology. In addition, drag coefficient of the geometries were also numerically calculated. For all geometries the wake length in x and y directions and size of the foci of the streamlines are decreasing by increasing Reynolds numbers in time-averaged results. The time-averaged flow patterns of both experimental and numerical results have considerable symmetry with respect to the centerline of each cylinder. Contours of the time-averaged stream wise velocity for Re=10000 demonstrate that the stagnation point around the symmetry plane moves further upstream for all cylinders in accordance with Re=5000. The maximum drag coefficient value was yielded for the square cross-section cylinder as 1.78 due to the sharp-edged geometry.

  19. Low genetic diversity and recent demographic expansion in the red starfish Echinaster sepositus (Retzius 1816).

    Science.gov (United States)

    Garcia-Cisneros, Alex; Palacín, Creu; Ben Khadra, Yousra; Pérez-Portela, Rocío

    2016-09-15

    Understanding the phylogeography and genetic structure of populations and the processes responsible of patterns therein is crucial for evaluating the vulnerability of marine species and developing management strategies. In this study, we explore how past climatic events and ongoing oceanographic and demographic processes have shaped the genetic structure and diversity of the Atlanto-Mediterranean red starfish Echinaster sepositus. The species is relatively abundant in some areas of the Mediterranean Sea, but some populations have dramatically decreased over recent years due to direct extraction for ornamental aquariums and souvenir industries. Analyses across most of the distribution range of the species based on the mitochondrial cytochrome c oxidase subunit I gene and eight microsatellite loci revealed very low intraspecific genetic diversity. The species showed a weak genetic structure within marine basins despite the a priori low dispersal potential of its lecithotrophic larva. Our results also revealed a very recent demographic expansion across the distribution range of the species. The genetic data presented here indicate that the species might be highly vulnerable, due to its low intraspecific genetic diversity.

  20. Genetic diversity of the Acropora-associated hydrozoans: new insight from the Red Sea

    KAUST Repository

    Maggioni, Davide

    2017-01-21

    To date, four nominal species and several other unidentified species of Zanclea hydrozoans are known to live symbiotically with scleractinians, and recent surveys reported this association also in the Red Sea. Previous molecular studies showed that each coral genus involved in this association hosts only one species or molecular clade of Zanclea, with the only exception being the genus Acropora, which hosts at least two Zanclea species. Moreover, some of the detected genetic lineages were morphologically undistinguishable in the polyp stage, suggesting the presence of cryptic species. In this study, we investigated the morphology and genetic diversity of Acropora-associated Zanclea specimens collected in previous studies in Egypt and Israel, as well as new samples collected in Saudi Arabia. Based on the current data, all the analysed samples were morphologically identical to Zanclea gallii, a species associated with Acropora corals from the Maldives. However, molecular analyses separated the samples collected in the Red Sea from all other coral-associated hydroids. Therefore, phylogenetic reconstructions, haplotype networks, genetic distance analyses and distribution data allowed us to identify a previously unknown cryptic species of Acropora-associated hydroid, here named Zanclea gallii IIa, following a recently proposed molecular nomenclature.

  1. Diverse microbiota identified in whole intact nest chambers of the red mason bee Osmia bicornis (Linnaeus 1758.

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    Alexander Keller

    Full Text Available Microbial activity is known to have profound impact on bee ecology and physiology, both by beneficial and pathogenic effects. Most information about such associations is available for colony-building organisms, and especially the honey bee. There, active manipulations through worker bees result in a restricted diversity of microbes present within the colony environment. Microbial diversity in solitary bee nests remains unstudied, although their larvae face a very different situation compared with social bees by growing up in isolated compartments. Here, we assessed the microbiota present in nests and pre-adults of Osmia bicornis, the red mason bee, by culture-independent pyrosequencing. We found high bacterial diversity not comparable with honey bee colonies. We identified a variety of bacteria potentially with positive or negative interactions for bee larvae. However, most of the other diverse bacteria present in the nests seem to originate from environmental sources through incorporated nest building material and stored pollen. This diversity of microorganisms may cause severe larval mortality and require specific physiological or symbiotic adaptations against microbial threats. They may however also profit from such a diverse environment through gain of mutualistic partners. We conclude that further studies of microbiota interaction in solitary bees will improve the understanding of fitness components and populations dynamics.

  2. Diverse microbiota identified in whole intact nest chambers of the red mason bee Osmia bicornis (Linnaeus 1758).

    Science.gov (United States)

    Keller, Alexander; Grimmer, Gudrun; Steffan-Dewenter, Ingolf

    2013-01-01

    Microbial activity is known to have profound impact on bee ecology and physiology, both by beneficial and pathogenic effects. Most information about such associations is available for colony-building organisms, and especially the honey bee. There, active manipulations through worker bees result in a restricted diversity of microbes present within the colony environment. Microbial diversity in solitary bee nests remains unstudied, although their larvae face a very different situation compared with social bees by growing up in isolated compartments. Here, we assessed the microbiota present in nests and pre-adults of Osmia bicornis, the red mason bee, by culture-independent pyrosequencing. We found high bacterial diversity not comparable with honey bee colonies. We identified a variety of bacteria potentially with positive or negative interactions for bee larvae. However, most of the other diverse bacteria present in the nests seem to originate from environmental sources through incorporated nest building material and stored pollen. This diversity of microorganisms may cause severe larval mortality and require specific physiological or symbiotic adaptations against microbial threats. They may however also profit from such a diverse environment through gain of mutualistic partners. We conclude that further studies of microbiota interaction in solitary bees will improve the understanding of fitness components and populations dynamics.

  3. Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments.

    Science.gov (United States)

    Thompson, Luke R; Field, Chris; Romanuk, Tamara; Ngugi, David; Siam, Rania; El Dorry, Hamza; Stingl, Ulrich

    2013-06-01

    Large swaths of the nutrient-poor surface ocean are dominated numerically by cyanobacteria (Prochlorococcus), cyanobacterial viruses (cyanophage), and alphaproteobacteria (SAR11). How these groups thrive in the diverse physicochemical environments of different oceanic regions remains poorly understood. Comparative metagenomics can reveal adaptive responses linked to ecosystem-specific selective pressures. The Red Sea is well-suited for studying adaptation of pelagic-microbes, with salinities, temperatures, and light levels at the extreme end for the surface ocean, and low nutrient concentrations, yet no metagenomic studies have been done there. The Red Sea (high salinity, high light, low N and P) compares favorably with the Mediterranean Sea (high salinity, low P), Sargasso Sea (low P), and North Pacific Subtropical Gyre (high light, low N). We quantified the relative abundance of genetic functions among Prochlorococcus, cyanophage, and SAR11 from these four regions. Gene frequencies indicate selection for phosphorus acquisition (Mediterranean/Sargasso), DNA repair and high-light responses (Red Sea/Pacific Prochlorococcus), and osmolyte C1 oxidation (Red Sea/Mediterranean SAR11). The unexpected connection between salinity-dependent osmolyte production and SAR11 C1 metabolism represents a potentially major coevolutionary adaptation and biogeochemical flux. Among Prochlorococcus and cyanophage, genes enriched in specific environments had ecotype distributions similar to nonenriched genes, suggesting that inter-ecotype gene transfer is not a major source of environment-specific adaptation. Clustering of metagenomes using gene frequencies shows similarities in populations (Red Sea with Pacific, Mediterranean with Sargasso) that belie their geographic distances. Taken together, the genetic functions enriched in specific environments indicate competitive strategies for maintaining carrying capacity in the face of physical stressors and low nutrient availability.

  4. Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments

    KAUST Repository

    Thompson, Luke R

    2013-05-11

    Large swaths of the nutrient-poor surface ocean are dominated numerically by cyanobacteria (Prochlorococcus), cyanobacterial viruses (cyanophage), and alphaproteobacteria (SAR11). How these groups thrive in the diverse physicochemical environments of different oceanic regions remains poorly understood. Comparative metagenomics can reveal adaptive responses linked to ecosystem-specific selective pressures. The Red Sea is well-suited for studying adaptation of pelagic-microbes, with salinities, temperatures, and light levels at the extreme end for the surface ocean, and low nutrient concentrations, yet no metagenomic studies have been done there. The Red Sea (high salinity, high light, low N and P) compares favorably with the Mediterranean Sea (high salinity, low P), Sargasso Sea (low P), and North Pacific Subtropical Gyre (high light, low N). We quantified the relative abundance of genetic functions among Prochlorococcus, cyanophage, and SAR11 from these four regions. Gene frequencies indicate selection for phosphorus acquisition (Mediterranean/Sargasso), DNA repair and high-light responses (Red Sea/Pacific Prochlorococcus), and osmolyte C1 oxidation (Red Sea/Mediterranean SAR11). The unexpected connection between salinity-dependent osmolyte production and SAR11 C1 metabolism represents a potentially major coevolutionary adaptation and biogeochemical flux. Among Prochlorococcus and cyanophage, genes enriched in specific environments had ecotype distributions similar to nonenriched genes, suggesting that inter-ecotype gene transfer is not a major source of environment-specific adaptation. Clustering of metagenomes using gene frequencies shows similarities in populations (Red Sea with Pacific, Mediterranean with Sargasso) that belie their geographic distances. Taken together, the genetic functions enriched in specific environments indicate competitive strategies for maintaining carrying capacity in the face of physical stressors and low nutrient availability. 2013 The

  5. Diversity and Ecological Correlates of Red Fluorescence in Marine Fishes

    Directory of Open Access Journals (Sweden)

    Nils Anthes

    2016-11-01

    Full Text Available Marine environments at depths below -10 to -25 m are almost devoid of ambient red sunlight because water quickly attenuates long wavelengths. This stenospectral light environment presents unique opportunities for organisms that can transform ambient blue-green light into red light by fluorescence. Numerous marine fish species display intricate patterns of fluorescence. Because color vision is a key component of fish sensory ecology, several putative visual functions of red fluorescence have been proposed but are difficult to test experimentally. Here, we follow a comparative approach to assess the consistency between the phylogenetic distribution of red fluorescence with its presumed functions. We collected and analyzed the largest data set of red fluorescence in fishes to date, consisting of confirmed cases in 272 primarily diurnal fish species from 49 out of 90 surveyed fish families and 12 out of 21 surveyed fish orders, contrasted to 393 fish species with confirmed absence of red fluorescence. Based on a priori hypotheses on adaptive function, we compare the prevalence of red fluorescence among pre-defined sets of species based on ecological or biological characteristics while controlling for shared ancestry. When comparing between species, we find no evidence that red fluorescence is more prevalent in deep-water species, contrasting with our recent finding that fluorescence brightness increases with depth within species. There is also no evidence for a role in group-driven communication. Phylogenetic patterns are consistent, however, with three other predictions. First, fluorescence with a rather patchy distribution across the body occurred significantly more often among sit-and-wait predators or otherwise sedentary fish than in more mobile species, consistent with background matching for camouflage. Second, small, predatory fishes tended to show red fluorescent irides disproportionally often consistent with a proposed function in prey

  6. Experimental investigation of galloping piezoelectric energy harvesters with square bluff bodies

    International Nuclear Information System (INIS)

    Ewere, Felix; Wang, Gang; Cain, Brian

    2014-01-01

    In this paper, both a baseline galloping piezoelectric energy harvester (GPEH) with a square bluff body and an improved GPEH with an impact bump stop are tested in a wind tunnel in order to determine the system damping, electrical response and limit cycle oscillation (LCO) amplitude. In the baseline GPEH, harvested voltage, LCO amplitude and damping ratio vary with wind velocity and electrical load. They all increase with increasing wind velocity under the same electrical load. Under each wind velocity, the damping ratio increases from the short circuit load, reaches a peak value at the electrical load resulting in a maximum voltage, and reduces the value at the open circuit load. The LCO amplitude shows the opposite trend compared to the damping case. It decreases as the electrical resistance load increases and reaches the minimum value when the damping ratio is highest. A resistance load of 100 kΩ yields a maximum peak power output. The impact stop is introduced to reduce bending stresses and improve the fatigue life of the baseline GPEH. The performance of the improved GPEH depends on the stop design parameters such as gap size, stop location and contact area. Comprehensive tests were conducted to investigate the effect of each parameter on the performance of the improved GPEH and an optimal bump stop configuration was determined. Compared to the expected proportional reduction in both electrical and structural responses, a maximum 70% reduction in LCO amplitude and only a maximum 20% reduction in harvested voltage are achieved in our optimal improved GPEH. The time variable and motion dependent aerodynamic forces acting on the bluff body could contribute to this. In summary, comprehensive experimental evaluations were conducted to characterize the performance of both baseline GPEHs and improved GPEHs. The baseline GPEH service life can be significantly improved by incorporating an impact bump stop. The improved GPEH design provides a practical solution to

  7. Diversity of Endophytic Fungi from Red Ginger (Zingiber officinale Rosc. Plant and Their Inhibitory Effect to Fusarium oxysporum Plant Pathogenic Fungi

    Directory of Open Access Journals (Sweden)

    SIHEGIKO KANAYA

    2013-09-01

    Full Text Available Indonesia has been known as a country with high medicinal plant diversity. One of the most common medicinal plant from Indonesia is red ginger (Zingiber officinale Rosc.. Nevertheless, limited studies of endophytic fungi associated with these medicinal plants are hitherto available. The objectives of this research were to study the diversity of endophytic fungi on red ginger and to analyze their potential as a source of antifungal agent. All parts of plant organs such as leaf, rhizome, root, and stem were subjected for isolation. Fungal identification was carried out by using a combination of morphological characteristic and molecular analysis of DNA sequence generated from ITS rDNA region. Thirty endophytic fungi were successfully isolated from leaf, rhizome, root, and stem of red ginger plant. Antagonistic activity was tested against Fusarium oxysporum, a pathogenic fungus on plants, using an antagonistic assay. Based on this approach, the fungi were assigned as Acremonium macroclavatum, Beltraniella sp., Cochliobolus geniculatus and its anamorphic stage Curvularia affinis, Fusarium solani, Glomerella cingulata, and its anamorphic stage Colletotrichum gloeosporoides, Lecanicillium kalimantanense, Myrothecium verrucaria, Neonectria punicea, Periconia macrospinosa, Rhizopycnis vagum, and Talaromyces assiutensis. R. vagum was found specifically on root whereas C. affinis, L. kalimantanense, and M. verrucaria were found on stem of red ginger plant. A. macroclavatum was found specifically in red ginger plant’s organ which located under the ground, whereas C. affinis was found from shoot or organ which located above the ground. The antagonistic activity of isolated endophytic fungi against F. oxysporum varied with the inhibition value range from 1.4 to 68.8%. C. affinis (JMbt7, F. solani (JMd14, and G. cingulata (JMr2 had significantly high antagonistic activity with the value above 65%; and R. vagum (JMa4 and C. geniculatus (JMbt9 had

  8. Diversity of Endophytic Fungi from Red Ginger (Zingiber officinale Rosc. Plant and Their Inhibitory Effect to Fusarium oxysporum Plant Pathogenic Fungi

    Directory of Open Access Journals (Sweden)

    ROHANI CINTA BADIA GINTING

    2013-09-01

    Full Text Available Indonesia has been known as a country with high medicinal plant diversity. One of the most common medicinal plant from Indonesia is red ginger (Zingiber officinale Rosc.. Nevertheless, limited studies of endophytic fungi associated with these medicinal plants are hitherto available. The objectives of this research were to study the diversity of endophytic fungi on red ginger and to analyze their potential as a source of antifungal agent. All parts of plant organs such as leaf, rhizome, root, and stem were subjected for isolation. Fungal identification was carried out by using a combination of morphological characteristic and molecular analysis of DNA sequence generated from ITS rDNA region. Thirty endophytic fungi were successfully isolated from leaf, rhizome, root, and stem of red ginger plant. Antagonistic activity was tested against Fusarium oxysporum, a pathogenic fungus on plants, using an antagonistic assay. Based on this approach, the fungi were assigned as Acremonium macroclavatum, Beltraniella sp., Cochliobolus geniculatus and its anamorphic stage Curvularia affinis, Fusarium solani, Glomerella cingulata and its anamorphic stage Colletotrichum gloeosporoides, Lecanicillium kalimantanense, Myrothecium verrucaria, Neonectria punicea, Periconia macrospinosa, Rhizopycnis vagum, and Talaromyces assiutensis. R. vagum was found specifically on root whereas C. affinis, L. kalimantanense, and M. verrucaria were found on stem of red ginger plant. A. macroclavatum was found specifically in red ginger plant's organ which located under the ground, whereas C. affinis was found from shoot or organ which located above the ground. The antagonistic activity of isolated endophytic fungi against F. oxysporum varied with the inhibition value range from 1.4 to 68.8%. C. affinis (JMbt7, F. solani (JMd14, and G. cingulata (JMr2 had significantly high antagonistic activity with the value above 65%; and R. vagum (JMa4 and C. geniculatus (JMbt9 had significantly

  9. RED-ML

    DEFF Research Database (Denmark)

    Xiong, Heng; Liu, Dongbing; Li, Qiye

    2017-01-01

    using diverse RNA-seq datasets, we have developed a software tool, RED-ML: RNA Editing Detection based on Machine learning (pronounced as "red ML"). The input to RED-ML can be as simple as a single BAM file, while it can also take advantage of matched genomic variant information when available...... accurately detect novel RNA editing sites without relying on curated RNA editing databases. We have also made this tool freely available via GitHub . We have developed a highly accurate, speedy and general-purpose tool for RNA editing detection using RNA-seq data....... With the availability of RED-ML, it is now possible to conveniently make RNA editing a routine analysis of RNA-seq. We believe this can greatly benefit the RNA editing research community and has profound impact to accelerate our understanding of this intriguing posttranscriptional modification process....

  10. Optimal stretching in the reacting wake of a bluff body.

    Science.gov (United States)

    Wang, Jinge; Tithof, Jeffrey; Nevins, Thomas D; Colón, Rony O; Kelley, Douglas H

    2017-12-01

    We experimentally study spreading of the Belousov-Zhabotinsky reaction behind a bluff body in a laminar flow. Locations of reacted regions (i.e., regions with high product concentration) correlate with a moderate range of Lagrangian stretching and that range is close to the range of optimal stretching previously observed in topologically different flows [T. D. Nevins and D. H. Kelley, Phys. Rev. Lett. 117, 164502 (2016)]. The previous work found optimal stretching in a closed, vortex dominated flow, but this article uses an open flow and only a small area of appreciable vorticity. We hypothesize that optimal stretching is common in advection-reaction-diffusion systems with an excitation threshold, including excitable and bistable systems, and that the optimal range depends on reaction chemistry and not on flow shape or characteristic speed. Our results may also give insight into plankton blooms behind islands in ocean currents.

  11. Numerical investigation of incompressible fluid flow and heat transfer across a bluff body in a channel flow

    Directory of Open Access Journals (Sweden)

    Taymaz Imdat

    2015-01-01

    Full Text Available The Lattice Boltzmann Method is applied to computationally investigate the laminar flow and heat transfer of an incompressible fluid with constant material properties in a two-dimensional channel with a built-in bluff body. In this study, a triangular prism is taken as the bluff body. Not only the momentum transport, but also the energy transport is modeled by the Lattice Boltzmann Method. A uniform lattice structure with a single time relaxation rule is used. For obtaining a higher flexibility on the computational grid, interpolation methods are applied, where the information is transferred from the lattice structure to the computational grid by Lagrange interpolation. The flow is investigated for different Reynolds numbers, while keeping the Prandtl number at the constant value of 0.7. The results show how the presence of a triangular prism effects the flow and heat transfer patterns for the steady-state and unsteady-periodic flow regimes. As an assessment of the accuracy of the developed Lattice Boltzmann code, the results are compared with those obtained by a commercial Computational Fluid Dynamics code. It is observed that the present Lattice Boltzmann code delivers results that are of similar accuracy to the well-established Computational Fluid Dynamics code, with much smaller computational time for the prediction of the unsteady phenomena.

  12. Y-Chromosome Markers for the Red Fox.

    Science.gov (United States)

    Rando, Halie M; Stutchman, Jeremy T; Bastounes, Estelle R; Johnson, Jennifer L; Driscoll, Carlos A; Barr, Christina S; Trut, Lyudmila N; Sacks, Benjamin N; Kukekova, Anna V

    2017-09-01

    The de novo assembly of the red fox (Vulpes vulpes) genome has facilitated the development of genomic tools for the species. Efforts to identify the population history of red foxes in North America have previously been limited by a lack of information about the red fox Y-chromosome sequence. However, a megabase of red fox Y-chromosome sequence was recently identified over 2 scaffolds in the reference genome. Here, these scaffolds were scanned for repeated motifs, revealing 194 likely microsatellites. Twenty-three of these loci were selected for primer development and, after testing, produced a panel of 11 novel markers that were analyzed alongside 2 markers previously developed for the red fox from dog Y-chromosome sequence. The markers were genotyped in 76 male red foxes from 4 populations: 7 foxes from Newfoundland (eastern Canada), 12 from Maryland (eastern United States), and 9 from the island of Great Britain, as well as 48 foxes of known North American origin maintained on an experimental farm in Novosibirsk, Russia. The full marker panel revealed 22 haplotypes among these red foxes, whereas the 2 previously known markers alone would have identified only 10 haplotypes. The haplotypes from the 4 populations clustered primarily by continent, but unidirectional gene flow from Great Britain and farm populations may influence haplotype diversity in the Maryland population. The development of new markers has increased the resolution at which red fox Y-chromosome diversity can be analyzed and provides insight into the contribution of males to red fox population diversity and patterns of phylogeography. © The American Genetic Association 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  13. A Comparison of the Characteristics of Planar and Axisymmetric Bluff-Body Combustors Operated under Stratified Inlet Mixture Conditions

    Directory of Open Access Journals (Sweden)

    G. Paterakis

    2013-01-01

    Full Text Available The work presents comparisons of the flame stabilization characteristics of axisymmetric disk and 2D slender bluff-body burner configurations, operating with inlet mixture stratification, under ultralean conditions. A double cavity propane air premixer formed along three concentric disks, supplied with a radial equivalence ratio gradient the afterbody disk recirculation, where the first flame configuration is stabilized. Planar fuel injection along the center plane of the leading face of a slender square cylinder against the approach cross-flow results in a stratified flame configuration stabilized alongside the wake formation region in the second setup. Measurements of velocities, temperatures, OH∗ and CH∗ chemiluminescence, local extinction criteria, and large-eddy simulations are employed to examine a range of ultralean and close to extinction flame conditions. The variations of the reacting front disposition within these diverse reacting wake topologies, the effect of the successive suppression of heat release on the near flame region characteristics, and the reemergence of large-scale vortical activity on approach to lean blowoff (LBO are investigated. The cross-correlation of the performance of these two popular flame holders that are at the opposite ends of current applications might offer helpful insights into more effective control measures for expanding the operational margin of a wider range of stabilization configurations.

  14. High-Speed Linear Raman Spectroscopy for Instability Analysis of a Bluff Body Flame

    Science.gov (United States)

    Kojima, Jun; Fischer, David

    2013-01-01

    We report a high-speed laser diagnostics technique based on point-wise linear Raman spectroscopy for measuring the frequency content of a CH4-air premixed flame stabilized behind a circular bluff body. The technique, which primarily employs a Nd:YLF pulsed laser and a fast image-intensified CCD camera, successfully measures the time evolution of scalar parameters (N2, O2, CH4, and H2O) in the vortex-induced flame instability at a data rate of 1 kHz. Oscillation of the V-shaped flame front is quantified through frequency analysis of the combustion species data and their correlations. This technique promises to be a useful diagnostics tool for combustion instability studies.

  15. Metagenomic studies of the Red Sea.

    Science.gov (United States)

    Behzad, Hayedeh; Ibarra, Martin Augusto; Mineta, Katsuhiko; Gojobori, Takashi

    2016-02-01

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied among marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmoregulation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1-3°C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the Red Sea, and

  16. Genetic assessment of captive red panda (Ailurus fulgens) population.

    Science.gov (United States)

    Kumar, Arun; Rai, Upashna; Roka, Bhupen; Jha, Alankar K; Reddy, P Anuradha

    2016-01-01

    Red panda (Ailurus fulgens) is threatened across its range by detrimental human activities and rapid habitat changes necessitating captive breeding programs in various zoos globally to save this flagship species from extinction. One of the ultimate aims of ex situ conservation is reintroduction of endangered animals into their natural habitats while maintaining 90 % of the founder genetic diversity. Advances in molecular genetics and microsatellite genotyping techniques make it possible to accurately estimate genetic diversity of captive animals of unknown ancestry. Here we assess genetic diversity of the red panda population in Padmaja Naidu Himalayan Zoological Park, Darjeeling, which plays a pivotal role in ex situ conservation of red panda in India. We generated microsatellite genotypes of fifteen red pandas with a set of fourteen loci. This population is genetically diverse with 68 % observed heterozygosity (H O ) and mean inbreeding (F IS ) coefficient of 0.05. However population viability analysis reveals that this population has a very low survival probability (<2 %) and will rapidly loose its genetic diversity to 37 % mainly due to small population size and skewed male-biased sex ratio. Regular supplementation with a pair of adult individuals every five years will increase survival probability and genetic diversity to 99 and 61 % respectively and will also support future harvesting of individuals for reintroduction into the wild and exchange with other zoos.

  17. Red squirrel middens influence abundance but not diversity of other vertebrates.

    Directory of Open Access Journals (Sweden)

    Erin E Posthumus

    Full Text Available Some animals modify the environment in ways that can influence the resources available to other species. Because red squirrels (Tamiasciurus hudsonicus create large piles of conifer-cone debris (middens in which they store cones, squirrels concentrate resources that might affect biodiversity locally. To determine whether other animals are attracted to midden sites beyond their affinity for the same resources that attract red squirrels, we assessed associations between middens, mammals, and birds at population and community levels. We surveyed 75 middens where residency rates of red squirrels varied during the previous five years; sampling along this residency gradient permitted us to evaluate the influence of resources at middens beyond the influence of a resident squirrel. At each location, we quantified vegetation, landscape structure, abundance of conifer cones, and midden structure, and used capture-recapture, distance sampling, and remote cameras to quantify presence, abundance, and species richness of mammals and birds. Red squirrels and the resources they concentrated at middens influenced mammals and birds at the population scale and to a lesser extent at the community scale. At middens with higher residency rates of red squirrels, richness of medium and large mammals increased markedly and species richness of birds increased slightly. After accounting for local forest characteristics, however, only species richness of medium-to-large mammals was associated with a red squirrel being resident during surveys. In areas where red squirrels were resident during surveys or in areas with greater amounts of resources concentrated by red squirrels, abundances of two of four small mammal species and two of four bird species increased. We conclude that the presence of this ecosystem modifier and the resources it concentrates influence abundance of some mammals and birds, which may have implications for maintaining biodiversity across the wide

  18. Characterisation of adaptive genetic diversity in environmentally contrasted populations of Eucalyptus camaldulensis Dehnh. (river red gum.

    Directory of Open Access Journals (Sweden)

    Shannon Dillon

    Full Text Available As an increasing number of ecosystems face departures from long standing environmental conditions under climate change, our understanding of the capacity of species to adapt will become important for directing conservation and management of biodiversity. Insights into the potential for genetic adaptation might be gained by assessing genomic signatures of adaptation to historic or prevailing environmental conditions. The river red gum (Eucalyptus camaldulensis Dehnh. is a widespread Australian eucalypt inhabiting riverine and floodplain habitats which spans strong environmental gradients. We investigated the effects of adaptation to environment on population level genetic diversity of E. camaldulensis, examining SNP variation in candidate gene loci sampled across 20 climatically diverse populations approximating the species natural distribution. Genetic differentiation among populations was high (F(ST = 17%, exceeding previous estimates based on neutral markers. Complementary statistical approaches identified 6 SNP loci in four genes (COMT, Dehydrin, ERECTA and PIP2 which, after accounting for demographic effects, exhibited higher than expected levels of genetic differentiation among populations and whose allelic variation was associated with local environment. While this study employs but a small proportion of available diversity in the eucalyptus genome, it draws our attention to the potential for application of wide spread eucalypt species to test adaptive hypotheses.

  19. Experimental aerodynamic study of a car-type bluff body

    Science.gov (United States)

    Conan, Boris; Anthoine, Jérôme; Planquart, Philippe

    2011-05-01

    The Ahmed body is used as a reference model for fundamental studies of car-type bluff body aerodynamics, in particular focused on the influence of the rear slant angle on the drag coefficient. The objectives of the present work are to obtain reliable drag coefficient comparable to the literature and to explain, based on the nature of the flow, its variation when changing the rear slant angle from 10° to 40°. The drag coefficients measured in both an open and a closed test sections differ by less than 0.5% which proves the reliability and reproducibility of the results. The sensitivity of the drag coefficient to some parameters such as the model roughness or the oncoming boundary layer and the lack of precise information on these parameters in the literature could explain the difference observed with the Ahmed drag coefficient data. The various types of measurement techniques used in the study underline their complementarity. The combination of particle image velocimetry and oil visualization provides a deeper understanding of the flow behaviour around the Ahmed body and a physical interpretation of the drag coefficient evolution.

  20. [Mini review] metagenomic studies of the Red Sea

    KAUST Repository

    Behzad, Hayedeh

    2015-10-23

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied amongst marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmolyte C1 oxidation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1–3 °C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the

  1. [Mini review] metagenomic studies of the Red Sea

    KAUST Repository

    Behzad, Hayedeh; Ibarra, Martin Augusto; Mineta, Katsuhiko; Gojobori, Takashi

    2015-01-01

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied amongst marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmolyte C1 oxidation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1–3 °C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the

  2. Environmental Assessment of the Gering-Stegall 115-kV Transmission Line Consolidation Project, Scotts Bluff County, Nebraska

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-05-01

    The Department of Energy (DOE), Western Area Power Administration (Western) proposes to consolidate segments of two transmission lines near the Gering Substation in Gering, Nebraska. The transmission lines are both located in Scotts Bluff County, Nebraska. The transmission lines are both located in Scotts Bluff County, Nebraska, within the city of Gering. Presently, there are three parallel 115-kilovolt (kV) transmission lines on separate rights-of-way (ROW) that terminate at the Gering Substation. The project would include dismantling the Archer-Gering wood-pole transmission line and rebuilding the remaining two lines on single-pole steel double circuit structures. The project would consolidate the Gering-Stegall North and Gering-Stegall South 115-kV transmission lines on to one ROW for a 1.33-mile segment between the Gering Substation and a point west of the Gering Landfill. All existing wood-pole H-frame structures would be removed, and the Gering-Stegall North and South ROWs abandoned. Western is responsible for the design, construction, operation, and maintenance of the line. Western prepared an environmental assessment (EA) that analyzed the potential environmental impacts of the proposed construction, operation, and maintenance of the 115-kV transmission line consolidation. Based on the analyses in the EA, the DOE finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act of 1969 (NEPA).

  3. Environmental Assessment of the Gering-Stegall 115-kV Transmission Line Consolidation Project, Scotts Bluff County, Nebraska

    International Nuclear Information System (INIS)

    1995-05-01

    The Department of Energy (DOE), Western Area Power Administration (Western) proposes to consolidate segments of two transmission lines near the Gering Substation in Gering, Nebraska. The transmission lines are both located in Scotts Bluff County, Nebraska. The transmission lines are both located in Scotts Bluff County, Nebraska, within the city of Gering. Presently, there are three parallel 115-kilovolt (kV) transmission lines on separate rights-of-way (ROW) that terminate at the Gering Substation. The project would include dismantling the Archer-Gering wood-pole transmission line and rebuilding the remaining two lines on single-pole steel double circuit structures. The project would consolidate the Gering-Stegall North and Gering-Stegall South 115-kV transmission lines on to one ROW for a 1.33-mile segment between the Gering Substation and a point west of the Gering Landfill. All existing wood-pole H-frame structures would be removed, and the Gering-Stegall North and South ROWs abandoned. Western is responsible for the design, construction, operation, and maintenance of the line. Western prepared an environmental assessment (EA) that analyzed the potential environmental impacts of the proposed construction, operation, and maintenance of the 115-kV transmission line consolidation. Based on the analyses in the EA, the DOE finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act of 1969 (NEPA)

  4. Genetic Diversity Among Colletotrichum falcatum Isolates Causing Red Rot of Sugarcane in Subtropical Region of India

    Directory of Open Access Journals (Sweden)

    Ratinderbir KAUR

    2014-09-01

    Full Text Available Silver Genetic diversity of Colletotrichum falcatum causing red rot of sugarcane was assessed based on morphological, pathological and molecular characteristics especially from sub-tropical Indian conditions. Sixteen isolates of this pathogen were collected based on the extensive survey on prominent varieties grown in the region along with some elite selections. Morphological observations (colony colour, mycelium pattern and sporulation grouped the isolates into two distinct types (C1: light type and C2: dark type. However, quantitative data on colony diameter showed five clusters for these isolates. Pathogenic characterization of these isolates on fourteen standard differentials formed six groups, ingroup 1: (CF-Pb-1 isolates Cf-157, Cf-249 and Cf-248 were the most virulent while group 6 (CF-Pb-6 isolates Cf-60 and Cf-247 were the least one. The genetic relatedness among the isolates using Random Amplified Polymorphic DNA (RAPD analysis revealed sufficient molecular polymorphism, which in turn confirmed the variation in virulence of different isolates. The data categorized different isolates into two major clusters and five independent lineages. Polymorphic information content (PIC ranged from 0.701 to 0.929. Isolate Cf-223 was found to be genetically most diverse among all the isolates. Present study inferred that morphological grouping of most of the isolates showed positive correlation with the pathogenic variability while molecular diversity did not showed such associations.

  5. Genetic diversity of Dahongjun, the commercially important "Big Red Mushroom" from southern China.

    Directory of Open Access Journals (Sweden)

    Mochan Li

    Full Text Available BACKGROUND: In southern China, a wild ectomycorrhizal mushroom commonly called "Dahongjun" or "Big Red Mushroom" by the local residents, has been harvested, consumed, and/or exported as an exotic food for many years. Although ecologically and economically important, very little is known about this mushroom, including its diversity and population structure. METHODOLOGY AND PRINCIPAL FINDINGS: In this study, we analyzed 122 samples from five local populations representing the known distribution ranges of this mushroom in southern China. We investigated the genetic diversity and geographic structure of this mushroom using sequences from four DNA fragments. Our analyses identified that this mushroom contained at least three divergent lineages: one corresponds to a recently described species Russula griseocarnosa from southern China and the remaining two likely represent two novel species. While these lineages were prominently structured geographically based on ITS sequences, evidence for ancient and/or recent gene flow was also identified within individual lineages. In addition, a local population from Ailaoshan in central Yunnan Province where 85 of our 122 specimens came from showed clear evidence of recombination. CONCLUSION AND SIGNIFICANCE: The ectomycorrhizal mushroom "Dahongjun" from southern China is a species complex with at least three divergent lineages. These lineages are largely geographically structured and there is evidence for recombination in nature. Our results indicate mature Dahongjun mushrooms with abundant basidiospores are important for the reproduction of this mushroom in nature and that individual populations of this species should be managed separately.

  6. Effects of bluff-body burner and coal particle size on NOx emissions and burnout

    Energy Technology Data Exchange (ETDEWEB)

    Xiao, L.S.; Cheng, J.F.; Zeng, H.C. [Huazhong University of Science and Technology, Wuhan (China). National Coal Combustion Lab.

    1999-12-01

    Investigations on air staging have been carried out using various coals with different degrees of fineness and a variety of burners with a 92.9 kw h{sup -1} tunnel furnace burning pulverized coal. It has been observed that using the bluff-body burner can reduce both the unburned carbon in fly ash and NOx emissions in the case of air staging. The experimental results show that air-staging combustion has a more remarkable effect on NOx reduction for higher-volatile coal than for lower-volatile coal. The results also show that there is a strong influence of coal particle size on NOx emissions and unburned carbon in the fly ash in the case of air staging. 13 refs., 12 figs., 2 tabs.

  7. Direct numerical simulation of bluff-body-stabilized premixed flames

    KAUST Repository

    Arias, Paul G.

    2014-01-10

    To enable high fidelity simulation of combustion phenomena in realistic devices, an embedded boundary method is implemented into direct numerical simulations (DNS) of reacting flows. One of the additional numerical issues associated with reacting flows is the stable treatment of the embedded boundaries in the presence of multicomponent species and reactions. The implemented method is validated in two test con gurations: a pre-mixed hydrogen/air flame stabilized in a backward-facing step configuration, and reactive flows around a square prism. The former is of interest in practical gas turbine combustor applications in which the thermo-acoustic instabilities are a strong concern, and the latter serves as a good model problem to capture the vortex shedding behind a bluff body. In addition, a reacting flow behind the square prism serves as a model for the study of flame stabilization in a micro-channel combustor. The present study utilizes fluid-cell reconstruction methods in order to capture important flame-to-solid wall interactions that are important in confined multicomponent reacting flows. Results show that the DNS with embedded boundaries can be extended to more complex geometries without loss of accuracy and the high fidelity simulation data can be used to develop and validate turbulence and combustion models for the design of practical combustion devices.

  8. Genetic diversity of the red-spotted tokay gecko (Gekko gecko Linnaeus, 1758) (Squamata: Gekkonidae) in Southeast Asia determined with multilocus enzyme electrophoresis

    OpenAIRE

    Watee Kongbuntad; Chairat Tantrawatpan; Warayutt Pilap; Kamonwan Jongsomchai; Tawin Chanaboon; Panida Laotongsan; Trevor N. Petney; Weerachai Saijuntha

    2016-01-01

    Red-spotted tokay geckos, Gekko gecko, are distributed mainly in Southeast Asia. They are a traditional Chinese medicine, with the massive hunting for exports dramatically decreasing their numbers. Information on the genetic diversity of these geckos in Southeast Asia is very limited. This study aims to explore intrapopulation and interpopulation genetic variation and the genetic structure of 16 populations collected from different localities in Thailand, Lao People’s Democratic Republic, and...

  9. Quaternary geology of the Duck Hawk Bluffs, southwest Banks Island, Arctic Canada: a re-investigation of a critical terrestrial type locality for glacial and interglacial events bordering the Arctic Ocean

    Science.gov (United States)

    Evans, David J. A.; England, John H.; La Farge, Catherine; Coulthard, Roy D.; Lakeman, Thomas R.; Vaughan, Jessica M.

    2014-05-01

    Duck Hawk Bluffs, southwest Banks Island, is a primary section (8 km long and 60 m high) in the western Canadian Arctic Archipelago exposing a long record of Quaternary sedimentation adjacent to the Arctic Ocean. A reinvestigation of Duck Hawk Bluffs demonstrates that it is a previously unrecognized thrust-block moraine emplaced from the northeast by Laurentide ice. Previous stratigraphic models of Duck Hawk Bluffs reported a basal unit of preglacial fluvial sand and gravel (Beaufort Fm, forested Arctic), overlain by a succession of three glaciations and at least two interglacials. Our observations dismiss the occurrence of preglacial sediments and amalgamate the entire record into three glacial intervals and one prominent interglacial. The first glacigenic sedimentation is recorded by an ice-contact sandur containing redeposited allochthonous organics previously assigned to the Beaufort Fm. This is overlain by fine-grained sediments with ice wedge pseudomorphs and well-preserved bryophyte assemblages corresponding to an interglacial environment similar to modern. The second glacial interval is recorded by ice-proximal mass flows and marine rhythmites that were glacitectonized when Laurentide ice overrode the site from Amundsen Gulf to the south. Sediments of this interval have been reported to be magnetically reversed (>780 ka). The third interval of glacigenic sedimentation includes glacifluvial sand and gravel recording the arrival of Laurentide ice that overrode the site from the northeast (island interior) depositing a glacitectonite and constructing the thrust block moraine that comprises Duck Hawk Bluffs. Sediments of this interval have been reported to be magnetically normal (Banks Island coalesced with an ice stream in Amundsen Gulf, depositing the interlobate Sachs Moraine that contains shells as young as ˜24 cal ka BP (Late Wisconsinan). During deglaciation, meltwater emanating from these separating ice lobes deposited outwash that extended to deglacial

  10. Genetic diversity of the red-spotted tokay gecko (Gekko gecko Linnaeus, 1758 (Squamata: Gekkonidae in Southeast Asia determined with multilocus enzyme electrophoresis

    Directory of Open Access Journals (Sweden)

    Watee Kongbuntad

    2016-03-01

    Full Text Available Red-spotted tokay geckos, Gekko gecko, are distributed mainly in Southeast Asia. They are a traditional Chinese medicine, with the massive hunting for exports dramatically decreasing their numbers. Information on the genetic diversity of these geckos in Southeast Asia is very limited. This study aims to explore intrapopulation and interpopulation genetic variation and the genetic structure of 16 populations collected from different localities in Thailand, Lao People's Democratic Republic, and Cambodia using multilocus enzyme electrophoresis. Relatively high genetic diversity occurred at both the intrapopulation and interpopulation levels. Genetic differentiation with FST values ranging between 0.006–0.892 was found. Five distinct genetic groups of the red-spotted tokay populations could be classified. A group of populations from northern Thailand showed the highest genetic differentiation from the other groups. Moreover, there was a substantial genetic subdivision depending on the genetic groups with FCT=0.664 and FSC=0.185. This genetic structure is related to geographical distribution and distance between populations, R2=0.5614, p<0.001. Our findings of pronounced genetic structuring and the concomitant conservation genetic consequences if further population loss occurs mean that management actions should therefore focus on the conservation of all of the main sites where tokay geckos still occur.

  11. A dendrochronological fire history of Opeongo lookout in Algonquin Park, Ontario

    Science.gov (United States)

    Richard P. Guyette; Daniel C. Dey

    1995-01-01

    Fire-scarred stumps and natural snags of red pine (Pinus resinosa Ait.) on a 70-m tall bluff along Costello Creek, 2 km south of Lake Opeongo, were dated using dendrochronological methods. A fire scar chronology was constructed from 18 of the red pine samples that contained 34 dated fire scars.

  12. Nitrite-Oxidizing Bacteria Community Composition and Diversity Are Influenced by Fertilizer Regimes, but Are Independent of the Soil Aggregate in Acidic Subtropical Red Soil.

    Science.gov (United States)

    Han, Shun; Li, Xiang; Luo, Xuesong; Wen, Shilin; Chen, Wenli; Huang, Qiaoyun

    2018-01-01

    Nitrification is the two-step aerobic oxidation of ammonia to nitrate via nitrite in the nitrogen-cycle on earth. However, very limited information is available on how fertilizer regimes affect the distribution of nitrite oxidizers, which are involved in the second step of nitrification, across aggregate size classes in soil. In this study, the community compositions of nitrite oxidizers ( Nitrobacter and Nitrospira ) were characterized from a red soil amended with four types of fertilizer regimes over a 26-year fertilization experiment, including control without fertilizer (CK), swine manure (M), chemical fertilization (NPK), and chemical/organic combined fertilization (MNPK). Our results showed that the addition of M and NPK significantly decreased Nitrobacter Shannon and Chao1 index, while M and MNPK remarkably increased Nitrospira Shannon and Chao1 index, and NPK considerably decreased Nitrospira Shannon and Chao1 index, with the greatest diversity achieved in soils amended with MNPK. However, the soil aggregate fractions had no impact on that alpha-diversity of Nitrobacter and Nitrospira under the fertilizer treatment. Soil carbon, nitrogen and phosphorus in the soil had a significant correlation with Nitrospira Shannon and Chao1 diversity index, while total potassium only had a significant correlation with Nitrospira Shannon diversity index. However, all of them had no significant correlation with Nitrobacter Shannon and Chao1 diversity index. The resistance indices for alpha-diversity indexes (Shannon and Chao1) of Nitrobacter were higher than those of Nitrospira in response to the fertilization regimes. Manure fertilizer is important in enhancing the Nitrospira Shannon and Chao1 index resistance. Principal co-ordinate analysis revealed that Nitrobacter - and Nitrospira -like NOB communities under four fertilizer regimes were differentiated from each other, but soil aggregate fractions had less effect on the nitrite oxidizers community. Redundancy analysis

  13. Unsteady separation and vortex shedding from a laminar separation bubble over a bluff body

    Science.gov (United States)

    Das, S. P.; Srinivasan, U.; Arakeri, J. H.

    2013-07-01

    Boundary layers are subject to favorable and adverse pressure gradients because of both the temporal and spatial components of the pressure gradient. The adverse pressure gradient may cause the flow to separate. In a closed loop unsteady tunnel we have studied the initiation of separation in unsteady flow past a constriction (bluff body) in a channel. We have proposed two important scalings for the time when boundary layer separates. One is based on the local pressure gradient and the other is a convective time scale based on boundary layer parameters. The flow visualization using a dye injection technique shows the flow structure past the body. Nondimensional shedding frequency (Strouhal number) is calculated based on boundary layer and momentum thicknesses. Strouhal number based on the momentum thickness shows a close agreement with that for flat plate and circular cylinder.

  14. Phylogenetic Diversity of Cephalopoda (Animalia:Mollusca) Along the Saudi Arabian Red Sea Coastline

    KAUST Repository

    Byron, Gordon

    2016-12-01

    Although the Red Sea presents a unique environment with high temperature and salinity, it remains an area that is understudied. This lack of information is reflected in many areas, one which is biodiversity. Despite increasing work on biodiversity throughout the Red Sea and an increase in Cephalopoda studies, Cephalopoda in the Red Sea remain underrepresented, which is especially pronounced in molecular analyses. Members of the class Cephalopoda are considered to be major contributors to coral reef ecosystems, serving as part of the food chain and exhibiting population increases due to targeted teleost fisheries and global climate change. In order to assess the biodiversity of Cephalopoda in the Saudi Arabian Red Sea, 87 specimens were collected from 25 reef locations between 17°N and 28°N latitude, as well as from the largest fish market in the Kingdom of Saudi Arabia. Taxonomic identification of specimens was determined using morphological comparisons with previously reported species in the Red Sea and the molecular barcoding region Cytochrome Oxidase I. 84 Red Sea sequences were compared with sequences from GenBank and analyzed using a complement of Neighbor-Joining, Maximum-Likelihood, and Bayesian inference trees. Species complexes were also investigated for Sepia pharaonis and Sepioteuthis lessoniana, which had been previously reported. From 17 cuttlefish, our study yielded three species, two of which matched previously reported species in GenBank. In addition, two distinct clades of Sepia pharaonis were identified. Of 35 squid collected, four species were identified, one of which did not match any other accepted species in literature, while Sepioteuthis lessoniana in the Red Sea formed a distinct clade. From 30 different specimens a total of five genera of Octopoda were present, forming six distinct species. Five Octopoda species collected did not match previously reported species, although many specimens were paralarvae or juveniles, so morphologically we

  15. Abundance and Diversity of CO2-Assimilating Bacteria and Algae Within Red Agricultural Soils Are Modulated by Changing Management Practice.

    Science.gov (United States)

    Yuan, Hongzhao; Ge, Tida; Chen, Xiangbi; Liu, Shoulong; Zhu, Zhenke; Wu, Xiaohong; Wei, Wenxue; Whiteley, Andrew Steven; Wu, Jinshui

    2015-11-01

    Elucidating the biodiversity of CO(2)-assimilating bacterial and algal communities in soils is important for obtaining a mechanistic view of terrestrial carbon sinks operating at global scales. "Red" acidic soils (Orthic Acrisols) cover large geographic areas and are subject to a range of management practices, which may alter the balance between carbon dioxide production and assimilation through changes in microbial CO(2)-assimilating populations. Here, we determined the abundance and diversity of CO(2)-assimilating bacteria and algae in acidic soils using quantitative PCR and terminal restriction fragment length polymorphism (T-RFLP) of the cbbL gene, which encodes the key CO(2) assimilation enzyme (ribulose-1,5-bisphosphate carboxylase/oxygenase) in the Calvin cycle. Within the framework of a long-term experiment (Taoyuan Agro-ecosystem, subtropical China), paddy rice fields were converted in 1995 to four alternative land management regimes: natural forest (NF), paddy rice (PR), maize crops (CL), and tea plantations (TP). In 2012 (17 years after land use transformation), we collected and analyzed the soils from fields under the original and converted land management regimes. Our results indicated that fields under the PR soil management system harbored the greatest abundance of cbbL copies (4.33 × 10(8) copies g(-1) soil). More than a decade after converting PR soils to natural, rotation, and perennial management systems, a decline in both the diversity and abundance of cbbL-harboring bacteria and algae was recorded. The lowest abundance of bacteria (0.98 × 10(8) copies g(-1) soil) and algae (0.23 × 10(6) copies g(-1) soil) was observed for TP soils. When converting PR soil management to alternative management systems (i.e., NF, CL, and TP), soil edaphic factors (soil organic carbon and total nitrogen content) were the major determinants of bacterial autotrophic cbbL gene diversity. In contrast, soil phosphorus concentration was the major regulator

  16. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea

    KAUST Repository

    Pearman, John K.

    2015-11-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore–offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales.

  17. Microbial Diversity and Ecology in the Interfaces of the Deep-sea Anoxic Brine Pools in the Red Sea

    KAUST Repository

    Hikmawan, Tyas I.

    2015-05-01

    Deep-sea anoxic brine pools are one of the most extreme ecosystems on Earth, which are characterized by drastic changes in salinity, temperature, and oxygen concentration. The interface between the brine and overlaying seawater represents a boundary of oxic-anoxic layer and a steep gradient of redox potential that would initiate favorable conditions for divergent metabolic activities, mainly methanogenesis and sulfate reduction. This study aimed to investigate the diversity of Bacteria, particularly sulfate-reducing communities, and their ecological roles in the interfaces of five geochemically distinct brine pools in the Red Sea. Performing a comprehensive study would enable us to understand the significant role of the microbial groups in local geochemical cycles. Therefore, we combined culture-dependent approach and molecular methods, such as 454 pyrosequencing of 16S rRNA gene, phylogenetic analysis of functional marker gene encoding for the alpha subunits of dissimilatory sulfite reductase (dsrA), and single-cell genomic analysis to address these issues. Community analysis based on 16S rRNA gene sequences demonstrated high bacterial diversity and domination of Bacteria over Archaea in most locations. In the hot and multilayered Atlantis II Deep, the bacterial communities were stratified and hardly overlapped. Meanwhile in the colder brine pools, sulfatereducing Deltaproteobacteria were the most prominent bacterial groups inhabiting the interfaces. Corresponding to the bacterial community profile, the analysis of dsrA gene sequences revealed collectively high diversity of sulfate-reducing communities. Desulfatiglans-like dsrA was the prevalent group and conserved across the Red Sea brine pools. In addition to the molecular studies, more than thirty bacterial strains were successfully isolated and remarkably were found to be cytotoxic against the cancer cell lines. However, none of them were sulfate reducers. Thus, a single-cell genomic analysis was used to study

  18. Genetic Diversity Among Colletotrichum falcatum Isolates Causing Red Rot of Sugarcane in Subtropical Region of India

    Directory of Open Access Journals (Sweden)

    Ratinderbir KAUR

    2014-09-01

    Full Text Available Silver Genetic diversity of Colletotrichum falcatum causing red rot of sugarcane was assessed based on morphological, pathological and molecular characteristics especially from sub-tropical Indian conditions. Sixteen isolates of this pathogen were collected based on the extensive survey on prominent varieties grown in the region along with some elite selections. Morphological observations (colony colour, mycelium pattern and sporulation grouped the isolates into two distinct types (C1: light type and C2: dark type. However, quantitative data on colony diameter showed five clusters for these isolates. Pathogenic characterization of these isolates on fourteen standard differentials formed six groups, ingroup 1: (CF-Pb-1 isolates Cf-157, Cf-249 and Cf-248 were the most virulent while group 6 (CF-Pb-6 isolates Cf-60 and Cf-247 were the least one. The genetic relatedness among the isolates using Random Amplified Polymorphic DNA (RAPD analysis revealed sufficient molecular polymorphism, which in turn confirmed the variation in virulence of different isolates. The data categorized different isolates into two major clusters and five independent lineages. Polymorphic information content (PIC ranged from 0.701 to 0.929. Isolate Cf-223 was found to be genetically most diverse among all the isolates. Present study inferred that morphological grouping of most of the isolates showed positive correlation with the pathogenic variability while molecular diversity did not showed such associations.

  19. Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea

    KAUST Repository

    Miyake, Sou

    2016-03-14

    Epulopiscium is a group of giant bacteria found in high abundance in intestinal tracts of herbivorous surgeonfish. Despite their peculiarly large cell size (can be up to 600 μm), extreme polyploidy (some with over 100,000 genome copies per cell) and viviparity (whereby mother cells produce live offspring), details about their diversity, distribution or their role in the host gut are lacking. Previous studies have highlighted the existence of morphologically distinct Epulopiscium cell types (defined as morphotypes A to J) in some surgeonfish genera, but the corresponding genetic diversity and distribution among other surgeonfishes remain mostly unknown. Therefore, we investigated the phylogenetic diversity of Epulopiscium, distribution and co-occurrence in multiple hosts. Here, we identified eleven new phylogenetic clades, six of which were also morphologically characterized. Three of these novel clades were phylogenetically and morphologically similar to cigar-shaped type A1 cells, found in a wide range of surgeonfishes including Acanthurus nigrofuscus, while three were similar to smaller, rod-shaped type E that has not been phylogenetically classified thus far. Our results also confirmed that biogeography appears to have relatively little influence on Epulopiscium diversity, as clades found in the Great Barrier Reef and Hawaii were also recovered from the Red Sea. Although multiple symbiont clades inhabited a given species of host surgeonfish and multiple host species possessed a given symbiont clade, statistical analysis of host and symbiont phylogenies indicated significant cophylogeny, which in turn suggests co-evolutionary relationships. A cluster analysis of Epulopiscium sequences from previously published amplicon sequencing dataset revealed a similar pattern, where specific clades were consistently found in high abundance amongst closely related surgeonfishes. Differences in abundance may indicate specialization of clades to certain gut environments

  20. Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea

    Science.gov (United States)

    Miyake, Sou; Ngugi, David K.; Stingl, Ulrich

    2016-01-01

    Epulopiscium is a group of giant bacteria found in high abundance in intestinal tracts of herbivorous surgeonfish. Despite their peculiarly large cell size (can be up to 600 μm), extreme polyploidy (some with over 100,000 genome copies per cell) and viviparity (whereby mother cells produce live offspring), details about their diversity, distribution or their role in the host gut are lacking. Previous studies have highlighted the existence of morphologically distinct Epulopiscium cell types (defined as morphotypes A to J) in some surgeonfish genera, but the corresponding genetic diversity and distribution among other surgeonfishes remain mostly unknown. Therefore, we investigated the phylogenetic diversity of Epulopiscium, distribution and co-occurrence in multiple hosts. Here, we identified eleven new phylogenetic clades, six of which were also morphologically characterized. Three of these novel clades were phylogenetically and morphologically similar to cigar-shaped type A1 cells, found in a wide range of surgeonfishes including Acanthurus nigrofuscus, while three were similar to smaller, rod-shaped type E that has not been phylogenetically classified thus far. Our results also confirmed that biogeography appears to have relatively little influence on Epulopiscium diversity, as clades found in the Great Barrier Reef and Hawaii were also recovered from the Red Sea. Although multiple symbiont clades inhabited a given species of host surgeonfish and multiple host species possessed a given symbiont clade, statistical analysis of host and symbiont phylogenies indicated significant cophylogeny, which in turn suggests co-evolutionary relationships. A cluster analysis of Epulopiscium sequences from previously published amplicon sequencing dataset revealed a similar pattern, where specific clades were consistently found in high abundance amongst closely related surgeonfishes. Differences in abundance may indicate specialization of clades to certain gut environments

  1. Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea

    KAUST Repository

    Miyake, Sou; Ngugi, David; Stingl, Ulrich

    2016-01-01

    Epulopiscium is a group of giant bacteria found in high abundance in intestinal tracts of herbivorous surgeonfish. Despite their peculiarly large cell size (can be up to 600 μm), extreme polyploidy (some with over 100,000 genome copies per cell) and viviparity (whereby mother cells produce live offspring), details about their diversity, distribution or their role in the host gut are lacking. Previous studies have highlighted the existence of morphologically distinct Epulopiscium cell types (defined as morphotypes A to J) in some surgeonfish genera, but the corresponding genetic diversity and distribution among other surgeonfishes remain mostly unknown. Therefore, we investigated the phylogenetic diversity of Epulopiscium, distribution and co-occurrence in multiple hosts. Here, we identified eleven new phylogenetic clades, six of which were also morphologically characterized. Three of these novel clades were phylogenetically and morphologically similar to cigar-shaped type A1 cells, found in a wide range of surgeonfishes including Acanthurus nigrofuscus, while three were similar to smaller, rod-shaped type E that has not been phylogenetically classified thus far. Our results also confirmed that biogeography appears to have relatively little influence on Epulopiscium diversity, as clades found in the Great Barrier Reef and Hawaii were also recovered from the Red Sea. Although multiple symbiont clades inhabited a given species of host surgeonfish and multiple host species possessed a given symbiont clade, statistical analysis of host and symbiont phylogenies indicated significant cophylogeny, which in turn suggests co-evolutionary relationships. A cluster analysis of Epulopiscium sequences from previously published amplicon sequencing dataset revealed a similar pattern, where specific clades were consistently found in high abundance amongst closely related surgeonfishes. Differences in abundance may indicate specialization of clades to certain gut environments

  2. Molecular biodiversity of Red Sea demosponges

    KAUST Repository

    Erpenbeck, Dirk

    2016-01-07

    Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters.

  3. Molecular biodiversity of Red Sea demosponges

    KAUST Repository

    Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M.; Berumen, Michael L.; Bü ttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schä tzle, Simone; Wö rheide, Gert

    2016-01-01

    Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters.

  4. Molecular biodiversity of Red Sea demosponges

    International Nuclear Information System (INIS)

    Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M.; Berumen, Michael L.; Büttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schätzle, Simone

    2016-01-01

    Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters. - Highlights: •First assessment of demosponge molecular biodiversity from Arabia •Rapid molecular screening approach on Arabian demosponge collections •Assessment of 28S 'C-Region' for demosponge barcoding •Data for a future comprehensive understanding of sponge biodiversity of the Red Sea

  5. Genetic diversity of six populations of red hybrid tilapia, using microsatellites genetic markers

    Directory of Open Access Journals (Sweden)

    Boris Briñez R.

    2011-05-01

    Full Text Available Objective. To determine and evaluate the genetic diversity of six populations of red hybrid tilapia, with the purpose to assess the potential benefit of a future breeding program conducted at the Research Center for Aquaculture (Ceniacua, Colombia. Material and methods. A total of 300 individuals, representing a wide genetic variability, were genotyped using a fluorescent microsatellite marker set of 5 gene-based SSRs in 6 different farms belonging to 4 States of Colombia. Results. The result showed that the mean number of alleles per locus per population was 8.367. The population 5 had the highest mean number of alleles with 9.6 alleles, followed by population 4 with 9.4 alleles, population 2 with 9.2, population 3 with 8.0, population 1 with 7.2 and population 6 with 6.8 alleles. The analysis of the distribution of genetic variation was (17.32% among population, while among individuals within populations was (28.55% and within individuals was high (54.12%. The standard diversity indices showed that population 4 was the more variable (mean He=0.837 followed by population 1 (mean He=0.728, population 3 (mean He=0.721, population 5 (mean He=0.705, population 2 (mean He=0.690, population 6 (mean He=0.586. Highly significant deviations from Hardy–Weinberg, exhibited all of the populations, mostly due to deficits of heterozygotes. Genotype frequencies at loci UNH 106 of population 5 and loci UNH 172 of population 6 were Hardy-Weinberg equilibrium (HWE. Conclusions. The results of this study, contribute to the genetic breeding program of Tilapia, conduced by the Research Center for Aquaculture. The Fst distance showed that the samples are differentiated genetically and it is possible to use at the beginning of the genetic program. However, it is recommended to introduce others individuals to the crossbreeding program.

  6. 75 FR 61664 - Endangered and Threatened Wildlife and Plants; Endangered Status for the Altamaha Spinymussel and...

    Science.gov (United States)

    2010-10-06

    ... collected 19 and 21 live individuals, respectively, during two surveys at Red Bluff (Thomas and Scott 1965... 2007a, p. 9). Agriculture, including row crops, poultry farms, and pastures, constitute 15.5 percent of...

  7. 75 FR 17765 - Notice of Availability of the Draft Environmental Impact Statement/Staff Assessment for the...

    Science.gov (United States)

    2010-04-07

    ... transmission line (which will connect to Southern California Edison's planned Red Bluff substation.... Authority: 40 CFR 1506.6 and 1506.10 and 43 CFR 1610.2 Thomas Pogacnik, Deputy State Director. [FR Doc. 2010...

  8. The status of coral reef ecology research in the Red Sea

    KAUST Repository

    Berumen, Michael L.; Hoey, Andrew; Bass, William H.; Bouwmeester, Jessica; Catania, Daniela; Cochran, Jesse; Khalil, Maha T.; Miyake, Sou; Mughal, Mehreen; Spaet, Julia L.Y.; Saenz Agudelo, Pablo

    2013-01-01

    The Red Sea has long been recognized as a region of high biodiversity and endemism. Despite this diversity and early history of scientific work, our understanding of the ecology of coral reefs in the Red Sea has lagged behind that of other large

  9. Simulation of bluff-body flows using iterative penalization in a multiresolution particle-mesh vortex method

    DEFF Research Database (Denmark)

    Spietz, Henrik Juul; Hejlesen, Mads Mølholm; Walther, Jens Honore

    in the oncoming flow. This may lead to structural instability e.g. when the shedding frequency aligns with the natural frequency of the structure. Fluid structure interaction must especially be considered when designing long span bridges. A three dimensional vortex-in-cell method is applied for the direct......The ability to predict aerodynamic forces, due to the interaction of a fluid flow with a solid body, is central in many fields of engineering and is necessary to identify error-prone structural designs. In bluff-body flows the aerodynamic forces oscillate due to vortex shedding and variations...... numerical simulation of the flow past a bodies of arbitrary shape. Vortex methods use a simple formulation where only the trajectories of discrete vortex particles are simulated. The Lagrangian formulation eliminates the CFL type condition that Eulerian methods have to satisfy. This allows vortex methods...

  10. Molecular biodiversity of Red Sea demosponges.

    Science.gov (United States)

    Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M; Berumen, Michael L; Büttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schätzle, Simone; Wörheide, Gert

    2016-04-30

    Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters. Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. On the Role of Chemical Kinetics Modeling in the LES of Premixed Bluff Body and Backward-Facing Step Combustors

    KAUST Repository

    Chakroun, Nadim W.

    2017-01-05

    Recirculating flows in the wake of a bluff body, behind a sudden expansion or down-stream of a swirler, are pivotal for anchoring a flame and expanding the stability range. The size and structure of these recirculation zones and the accurate prediction of the length of these zones is a very important characteristic that computational simulations should have. Large eddy simulation (LES) techniques with an appropriate combustion model and reaction mechanism afford a balance between computational complexity and predictive accuracy. In this study, propane/air mixtures were simulated in a bluff-body stabilized combustor based on the Volvo test case and also in a backward-facing step combustor. The main goal is to investigate the role of the chemical mechanism and the accuracy of estimating the extinction strain rate on the prediction of important ow features such as recirculation zones. Two 2-step mechanisms were employed, one which gave reasonable extinction strain rates and another modi ed 2-step mechanism where it grossly over-predicted the values. This modified mechanism under-predicted recirculation zone lengths compared to the original mechanism and had worse agreement with experiments in both geometries. While the recirculation zone lengths predicted by both reduced mechanisms in the step combustor scale linearly with the extinction strain rate, the scaling curves do not match experimental results as none of the simpli ed mechanisms produce extinction strain rates that are consistent with those predicted by the comprehensive mechanisms. We conclude that it is very important that a chemical mechanism is able to correctly predict extinction strain rates if it is to be used in CFD simulations.

  12. Multi-Point Velocity Correlations in the Wake of a Three-Dimensional Bluff Body

    Science.gov (United States)

    Shea, Patrick; Glauser, Mark

    2013-11-01

    Three-dimensional bluff-bodies known as turrets are commonly used for housing optical systems on airborne platforms. These geometries generate highly turbulent wakes that decrease the performance of the optical systems and the aircraft. The current experimental study used dynamic suction in both open and closed-loop control configurations to actively control the wake turret. The experiments were carried out at a Reynolds number of 5 × 105, and the flow field was characterized using stereoscopic PIV measurements acquired in the wake of the turret. These data were processed using traditional single-point statistics which showed that the active control system was able to significantly alter the wake of the turret. Using multi-point correlations, turbulent characteristics such as the integral length scale can be calculated. For the turret wake, estimates of the integral length scales were found to be highly dependent upon the region of the flow that was evaluated, especially when comparing the shear layers to the center of the wake. With the application of the active control, the integral length scales were generally found to increase.

  13. How Physical Processes are Informing River Management Actions at Marble Bluff Dam, Truckee River, Nevada

    Science.gov (United States)

    Bountry, J.; Godaire, J.; Bradley, D. N.

    2017-12-01

    At the terminus of the Truckee River into Pyramid Lake (Nevada, USA), upstream river management actions have dramatically reshaped the river landscape, posing significant challenges for the management of endangered aquatic species and maintenance of existing infrastructure. Within the last 100 years, upstream water withdrawal for human uses has resulted in a rapid lowering of Pyramid Lake which initiated up to 90 ft of channel incision. In 1976 Marble Bluff Dam was constructed to halt the upstream progression of channel incision and protect upstream agricultural lands, tribal resources, and infrastructure. Since construction an additional 40 ft of lake lowering and subsequent channel lowering now poses a potential risk to the structural integrity of the dam. The dynamic downstream river combined with ongoing reservoir sedimentation pose challenges to fish passage facilities that enable migration of numerous endangered cui-ui and threatened Lahontan Cutthroat Trout (LCT) to upstream spawning areas each year. These facilities include a fish lock at the dam, a fish bypass channel which allows fish to avoid the shallow delta area during low lake levels, and a meandering channel constructed by the Nature Conservancy to connect the bypass channel to the receding Pyramid Lake. The reservoir formed by Marble Bluff Dam has completely filled with sediment which impacts fish passage facilities. The original operating manual for the dam recommends year-round flushing of sediment through radial gates, but this can no longer be accomplished. During critical fish migration periods in the spring operators must ensure fish entrance channels downstream of the dam are not buried with released sediment and fish are not trapped in a portion of the reservoir full of sediment that would risk sending them back over the dam. To help inform future reservoir sediment and infrastructure management strategies, we bracket a range of potential river responses to lake level lowering and floods

  14. 76 FR 21402 - Notice of Availability of the Final Environmental Impact Statement for the Desert Sunlight...

    Science.gov (United States)

    2011-04-15

    ... Southern California Edison (SCE) of the new 500/220-kV Red Bluff Substation, where the project would.... Authority: 40 CFR 1506.6 and 1506.10; 43 CFR 1610.2 and1610.5. Thomas Pogacnik, Deputy State Director...

  15. 76 FR 62801 - Combined Notice of Filings #1

    Science.gov (United States)

    2011-10-11

    ... Pseudo PGA with Mesquite Solar 1 to be effective 11/1/2011. Filed Date: 09/30/2011. Accession Number... Electric Company submits tariff filing per 35.13(a)(2)(iii: Western USBR TFA for Red Bluff Pumping Plant to...

  16. Pine Bluff Arsenal Fish Survey

    National Research Council Canada - National Science Library

    Peacock, Lance

    2000-01-01

    Arkansas has a diverse ichthyofauna of over 215 species of fishes distributed in sixty-three genera and twenty-seven families which occupy a myriad of different aquatic habitats within its poltical boundaries...

  17. 75 FR 33576 - Tehama County Resource Advisory Committee; Meeting

    Science.gov (United States)

    2010-06-14

    ... (RAC) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions; (2) approval of minutes; (3) public comment; (4) Chairman's perspective; (5) project presentations; (6) next.... Individuals wishing to speak or propose agenda items must send their names and proposals to Randy Jero...

  18. 76 FR 12317 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2011-03-07

    ...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's Perspective, (5) Project Presentations, (6) Next..., CA. Individuals wishing to speak or propose agenda items must send their names and proposals to Randy...

  19. 75 FR 41795 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2010-07-19

    ...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's Perspective, (5) Project Voting, (6) Discuss Meeting... wishing to speak or propose agenda items must send their names and proposals to Randy Jero, Committee...

  20. 75 FR 18146 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2010-04-09

    ...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's Perspective, (5) Project Presentations, (6) Next..., CA. Individuals wishing to speak or propose agenda items must send their names and proposals to Randy...

  1. Abrupt warming of the Red Sea

    KAUST Repository

    Raitsos, D. E.

    2011-07-19

    Coral reef ecosystems, often referred to as “marine rainforests,” concentrate the most diverse life in the oceans. Red Sea reef dwellers are adapted in a very warm environment, fact that makes them vulnerable to further and rapid warming. The detection and understanding of abrupt temperature changes is an important task, as ecosystems have more chances to adapt in a slowly rather than in a rapid changing environment. Using satellite derived sea surface and ground based air temperatures, it is shown that the Red Sea is going through an intense warming initiated in the mid-90s, with evidence for an abrupt increase after 1994 (0.7°C difference pre and post the shift). The air temperature is found to be a key parameter that influences the Red Sea marine temperature. The comparisons with Northern Hemisphere temperatures revealed that the observed warming is part of global climate change trends. The hitherto results also raise additional questions regarding other broader climatic impacts over the area.

  2. Abrupt warming of the Red Sea

    Science.gov (United States)

    Raitsos, D. E.; Hoteit, I.; Prihartato, P. K.; Chronis, T.; Triantafyllou, G.; Abualnaja, Y.

    2011-07-01

    Coral reef ecosystems, often referred to as “marine rainforests,” concentrate the most diverse life in the oceans. Red Sea reef dwellers are adapted in a very warm environment, fact that makes them vulnerable to further and rapid warming. The detection and understanding of abrupt temperature changes is an important task, as ecosystems have more chances to adapt in a slowly rather than in a rapid changing environment. Using satellite derived sea surface and ground based air temperatures, it is shown that the Red Sea is going through an intense warming initiated in the mid-90s, with evidence for an abrupt increase after 1994 (0.7°C difference pre and post the shift). The air temperature is found to be a key parameter that influences the Red Sea marine temperature. The comparisons with Northern Hemisphere temperatures revealed that the observed warming is part of global climate change trends. The hitherto results also raise additional questions regarding other broader climatic impacts over the area.

  3. Influence of red mud on soil microbial communities: Application and comprehensive evaluation of the Biolog EcoPlate approach as a tool in soil microbiological studies.

    Science.gov (United States)

    Feigl, Viktória; Ujaczki, Éva; Vaszita, Emese; Molnár, Mónika

    2017-10-01

    Red mud can be applied as soil ameliorant to acidic, sandy and micronutrient deficient soils. There are still knowledge gaps regarding the effects of red mud on the soil microbial community. The Biolog EcoPlate technique is a promising tool for community level physiological profiling. This study presents a detailed evaluation of Biolog EcoPlate data from two case studies. In experiment "A" red mud from Ajka (Hungary) was mixed into acidic sandy soil in soil microcosms at 5-50 w/w%. In experiement "B" red mud soil mixture was mixed into low quality subsoil in a field experiment at 5-50 w/w%. According to average well color development, substrate average well color development and substrate richness 5-20% red mud increased the microbial activity of the acidic sandy soil over the short term, but the effect did not last for 10months. Shannon diversity index showed that red mud at up to 20% did not change microbial diversity over the short term, but the diversity decreased by the 10th month. 30-50% red mud had deteriorating effect on the soil microflora. 5-20% red mud soil mixture in the low quality subsoil had a long lasting enhancing effect on the microbial community based on all Biolog EcoPlate parameters. However, 50% red mud soil mixture caused a decrease in diversity and substrate richness. With the Biolog EcoPlate we were able to monitor the changes of the microbial community in red mud affected soils and to assess the amount of red mud and red mud soil mixture applicable for soil treatment in these cases. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea

    KAUST Repository

    Guan, Yue

    2015-11-01

    Oceanic deep hypersaline anoxic basins (DHABs) are characterized by drastic changes in physico-chemical conditions in the transition from overlaying seawater to brine body. Brine-seawater interfaces (BSIs) of several DHABs across the Mediterranean Sea have been shown to possess methanogenic and sulfate-reducing activities, yet no systematic studies have been conducted to address the potential functional diversity of methanogenic and sulfate-reducing communities in the Red Sea DHABs. Here, we evaluated the relative abundance of Bacteria and Archaea using quantitative PCR and conducted phylogenetic analyses of nearly full-length 16S rRNA genes as well as functional marker genes encoding the alpha subunits of methyl-coenzyme M reductase (mcrA) and dissimilatory sulfite reductase (dsrA). Bacteria predominated over Archaea in most locations, the majority of which were affiliated with Deltaproteobacteria, while Thaumarchaeota were the most prevalent Archaea in all sampled locations. The upper convective layers of Atlantis II Deep, which bear increasingly harsh environmental conditions, were dominated by members of the class Thermoplasmata (Marine Benthic Group E and Mediterranean Sea Brine Lakes Group 1). Our study revealed unique microbial compositions, the presence of niche-specific groups, and collectively, a higher diversity of sulfate-reducing communities compared to methanogenic communities in all five studied locations. © 2015 Institut Pasteur.

  5. Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea

    KAUST Repository

    Guan, Yue; Hikmawan, Tyas; Antunes, Andre; Ngugi, David; Stingl, Ulrich

    2015-01-01

    Oceanic deep hypersaline anoxic basins (DHABs) are characterized by drastic changes in physico-chemical conditions in the transition from overlaying seawater to brine body. Brine-seawater interfaces (BSIs) of several DHABs across the Mediterranean Sea have been shown to possess methanogenic and sulfate-reducing activities, yet no systematic studies have been conducted to address the potential functional diversity of methanogenic and sulfate-reducing communities in the Red Sea DHABs. Here, we evaluated the relative abundance of Bacteria and Archaea using quantitative PCR and conducted phylogenetic analyses of nearly full-length 16S rRNA genes as well as functional marker genes encoding the alpha subunits of methyl-coenzyme M reductase (mcrA) and dissimilatory sulfite reductase (dsrA). Bacteria predominated over Archaea in most locations, the majority of which were affiliated with Deltaproteobacteria, while Thaumarchaeota were the most prevalent Archaea in all sampled locations. The upper convective layers of Atlantis II Deep, which bear increasingly harsh environmental conditions, were dominated by members of the class Thermoplasmata (Marine Benthic Group E and Mediterranean Sea Brine Lakes Group 1). Our study revealed unique microbial compositions, the presence of niche-specific groups, and collectively, a higher diversity of sulfate-reducing communities compared to methanogenic communities in all five studied locations. © 2015 Institut Pasteur.

  6. 75 FR 9574 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2010-03-03

    ...) will meet in Red Bluff, California. Agenda items to be covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's Perspective, (5) Elect Vice Chairmen, (6) Next Agenda.... Individuals wishing to speak or propose agenda items must send their names and proposals to Randy Jero...

  7. 75 FR 51238 - Tehama County Resource Advisory Committee

    Science.gov (United States)

    2010-08-19

    ... covered include: (1) Introductions, (2) Approval of Minutes, (3) Public Comment, (4) Chairman's... documents other than rules #0;or proposed rules that are applicable to the public. Notices of hearings #0... Street, Red Bluff, CA. Individuals wishing to speak or propose agenda items must send their names and...

  8. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

    KAUST Repository

    Alzubaidy, Hanin S.; Essack, Magbubah; Malas, Tareq Majed Yasin; Bokhari, Ameerah; Motwalli, Olaa Amin; Kamanu, Frederick Kinyua; Jamhor, Suhaiza; Mokhtar, Noor Azlin; Antunes, Andre; Simoes, Marta; Alam, Intikhab; Bougouffa, Salim; Lafi, Feras Fawzi; Bajic, Vladimir B.; Archer, John A.C.

    2015-01-01

    To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  9. "To Bluff like a Man or Fold like a Girl?" - Gender Biased Deceptive Behavior in Online Poker.

    Science.gov (United States)

    Palomäki, Jussi; Yan, Jeff; Modic, David; Laakasuo, Michael

    2016-01-01

    Evolutionary psychology suggests that men are more likely than women to deceive to bolster their status and influence. Also gender perception influences deceptive behavior, which is linked to pervasive gender stereotypes: women are typically viewed as weaker and more gullible than men. We assessed bluffing in an online experiment (N = 502), where participants made decisions to bluff or not in simulated poker tasks against opponents represented by avatars. Participants bluffed on average 6% more frequently at poker tables with female-only avatars than at tables with male-only or gender mixed avatars-a highly significant effect in games involving repeated decisions. Nonetheless, participants did not believe the avatar genders affected their decisions. Males bluffed 13% more frequently than females. Unlike most economic games employed exclusively in research contexts, online poker is played for money by tens of millions of people worldwide. Thus, gender effects in bluffing have significant monetary consequences for poker players.

  10. "To Bluff like a Man or Fold like a Girl?" - Gender Biased Deceptive Behavior in Online Poker.

    Directory of Open Access Journals (Sweden)

    Jussi Palomäki

    Full Text Available Evolutionary psychology suggests that men are more likely than women to deceive to bolster their status and influence. Also gender perception influences deceptive behavior, which is linked to pervasive gender stereotypes: women are typically viewed as weaker and more gullible than men. We assessed bluffing in an online experiment (N = 502, where participants made decisions to bluff or not in simulated poker tasks against opponents represented by avatars. Participants bluffed on average 6% more frequently at poker tables with female-only avatars than at tables with male-only or gender mixed avatars-a highly significant effect in games involving repeated decisions. Nonetheless, participants did not believe the avatar genders affected their decisions. Males bluffed 13% more frequently than females. Unlike most economic games employed exclusively in research contexts, online poker is played for money by tens of millions of people worldwide. Thus, gender effects in bluffing have significant monetary consequences for poker players.

  11. The Egyptian Red Sea coastal microbiome: A study revealing differential microbial responses to diverse anthropogenic pollutants.

    Science.gov (United States)

    Mustafa, Ghada A; Abd-Elgawad, Amr; Ouf, Amged; Siam, Rania

    2016-07-01

    The Red Sea is considered one of the youngest oceanic systems, with unique physical, geochemical and biological characteristics. Tourism, industrialization, extensive fishing, oil processing and shipping are extensive sources of pollution in the Red Sea. We analyzed the geochemical characteristics and microbial community of sediments along the Egyptian coast of the Red Sea. Our sites mainly included 1) four ports used for shipping aluminum, ilmenite and phosphate; 2) a site previously reported to have suffered extensive oil spills; and 3) a site impacted by tourism. Two major datasets for the sediment of ten Red Sea coastal sites were generated; i) a chemical dataset included measurements of carbon, hydrogen, nitrogen and sulfur, metals and selected semi-volatile oil; and ii) a 16S rRNA Pyrotags bacterial metagenomic dataset. Based on the taxonomic assignments of the 16S rRNA Pyrotags to major bacterial groups, we report 30 taxa constituting an Egyptian Red Sea Coastal Microbiome. Bacteria that degrade hydrocarbons were predominant in the majority of the sites, particularly in two ports where they reached up to 76% of the total identified genera. In contrast, sulfate-reducing and sulfate-oxidizing bacteria dominated two lakes at the expense of other hydrocarbon metabolizers. Despite the reported "Egyptian Red Sea Coastal Microbiome," sites with similar anthropogenic pollutants showed unique microbial community abundances. This suggests that the abundance of a specific bacterial community is an evolutionary mechanism induced in response to selected anthropogenic pollutants. Copyright © 2016 Elsevier Ltd. All rights reserved.

  12. In-situ effects of eutrophication and overfishing on physiology and bacterial diversity of the red sea coral Acropora hemprichii.

    KAUST Repository

    Jessen, Christian

    2013-04-22

    Coral reefs of the Central Red Sea display a high degree of endemism, and are increasingly threatened by anthropogenic effects due to intense local coastal development measures. Overfishing and eutrophication are among the most significant local pressures on these reefs, but there is no information available about their potential effects on the associated microbial community. Therefore, we compared holobiont physiology and 16S-based bacterial communities of tissue and mucus of the hard coral Acropora hemprichii after 1 and 16 weeks of in-situ inorganic nutrient enrichment (via fertilizer diffusion) and/or herbivore exclusion (via caging) in an offshore reef of the Central Red Sea. Simulated eutrophication and/or overfishing treatments did not affect coral physiology with respect to coral respiration rates, chlorophyll a content, zooxanthellae abundance, or δ (15)N isotopic signatures. The bacterial community of A. hemprichii was rich and uneven, and diversity increased over time in all treatments. While distinct bacterial species were identified as a consequence of eutrophication, overfishing, or both, two bacterial species that could be classified to the genus Endozoicomonas were consistently abundant and constituted two thirds of bacteria in the coral. Several nitrogen-fixing and denitrifying bacteria were found in the coral specimens that were exposed to experimentally increased nutrients. However, no particular bacterial species was consistently associated with the coral under a given treatment and the single effects of manipulated eutrophication and overfishing could not predict the combined effect. Our data underlines the importance of conducting field studies in a holobiont framework, taking both, physiological and molecular measures into account.

  13. In-situ effects of eutrophication and overfishing on physiology and bacterial diversity of the red sea coral Acropora hemprichii.

    Science.gov (United States)

    Jessen, Christian; Villa Lizcano, Javier Felipe; Bayer, Till; Roder, Cornelia; Aranda, Manuel; Wild, Christian; Voolstra, Christian R

    2013-01-01

    Coral reefs of the Central Red Sea display a high degree of endemism, and are increasingly threatened by anthropogenic effects due to intense local coastal development measures. Overfishing and eutrophication are among the most significant local pressures on these reefs, but there is no information available about their potential effects on the associated microbial community. Therefore, we compared holobiont physiology and 16S-based bacterial communities of tissue and mucus of the hard coral Acropora hemprichii after 1 and 16 weeks of in-situ inorganic nutrient enrichment (via fertilizer diffusion) and/or herbivore exclusion (via caging) in an offshore reef of the Central Red Sea. Simulated eutrophication and/or overfishing treatments did not affect coral physiology with respect to coral respiration rates, chlorophyll a content, zooxanthellae abundance, or δ (15)N isotopic signatures. The bacterial community of A. hemprichii was rich and uneven, and diversity increased over time in all treatments. While distinct bacterial species were identified as a consequence of eutrophication, overfishing, or both, two bacterial species that could be classified to the genus Endozoicomonas were consistently abundant and constituted two thirds of bacteria in the coral. Several nitrogen-fixing and denitrifying bacteria were found in the coral specimens that were exposed to experimentally increased nutrients. However, no particular bacterial species was consistently associated with the coral under a given treatment and the single effects of manipulated eutrophication and overfishing could not predict the combined effect. Our data underlines the importance of conducting field studies in a holobiont framework, taking both, physiological and molecular measures into account.

  14. In-situ effects of eutrophication and overfishing on physiology and bacterial diversity of the red sea coral Acropora hemprichii.

    Directory of Open Access Journals (Sweden)

    Christian Jessen

    Full Text Available Coral reefs of the Central Red Sea display a high degree of endemism, and are increasingly threatened by anthropogenic effects due to intense local coastal development measures. Overfishing and eutrophication are among the most significant local pressures on these reefs, but there is no information available about their potential effects on the associated microbial community. Therefore, we compared holobiont physiology and 16S-based bacterial communities of tissue and mucus of the hard coral Acropora hemprichii after 1 and 16 weeks of in-situ inorganic nutrient enrichment (via fertilizer diffusion and/or herbivore exclusion (via caging in an offshore reef of the Central Red Sea. Simulated eutrophication and/or overfishing treatments did not affect coral physiology with respect to coral respiration rates, chlorophyll a content, zooxanthellae abundance, or δ (15N isotopic signatures. The bacterial community of A. hemprichii was rich and uneven, and diversity increased over time in all treatments. While distinct bacterial species were identified as a consequence of eutrophication, overfishing, or both, two bacterial species that could be classified to the genus Endozoicomonas were consistently abundant and constituted two thirds of bacteria in the coral. Several nitrogen-fixing and denitrifying bacteria were found in the coral specimens that were exposed to experimentally increased nutrients. However, no particular bacterial species was consistently associated with the coral under a given treatment and the single effects of manipulated eutrophication and overfishing could not predict the combined effect. Our data underlines the importance of conducting field studies in a holobiont framework, taking both, physiological and molecular measures into account.

  15. Characterization of the gut microbiota in the red panda (Ailurus fulgens).

    Science.gov (United States)

    Kong, Fanli; Zhao, Jiangchao; Han, Shushu; Zeng, Bo; Yang, Jiandong; Si, Xiaohui; Yang, Benqing; Yang, Mingyao; Xu, Huailiang; Li, Ying

    2014-01-01

    The red panda is the only living species of the genus Ailurus. Like giant pandas, red pandas are also highly specialized to feed mainly on highly fibrous bamboo. Although several studies have focused on the gut microbiota in the giant panda, little is known about the gut microbiota of the red panda. In this study, we characterized the fecal microbiota from both wild (n = 16) and captive (n = 6) red pandas using a pyrosequecing based approach targeting the V1-V3 hypervariable regions of the 16S rRNA gene. Distinct bacterial communities were observed between the two groups based on both membership and structure. Wild red pandas maintained significantly higher community diversity, richness and evenness than captive red pandas, the communities of which were skewed and dominated by taxa associated with Firmicutes. Phylogenetic analysis of the top 50 OTUs revealed that 10 of them were related to known cellulose degraders. To the best of our knowledge, this is the first study of the gut microbiota of the red panda. Our data suggest that, similar to the giant panda, the gut microbiota in the red panda might also play important roles in the digestion of bamboo.

  16. Comparative study of micromixing models in transported scalar PDF simulations of turbulent nonpremixed bluff body flames

    Energy Technology Data Exchange (ETDEWEB)

    Merci, Bart [Department of Flow, Heat and Combustion Mechanics, Ghent University-UGent, Ghent (Belgium); Roekaerts, Dirk [Department of Multi-Scale Physics, Delft University of Technology, Delft (Netherlands); Naud, Bertrand [CIEMAT, Madrid (Spain); Pope, Stephen B. [Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY (United States)

    2006-07-15

    Numerical simulation results are presented for turbulent jet diffusion flames with various levels of turbulence-chemistry interaction, stabilized behind a bluff body (Sydney Flames HM1-3). Interaction between turbulence and combustion is modeled with the transported joint-scalar PDF approach. The mass density function transport equation is solved in a Lagrangian manner. A second-moment-closure turbulence model is applied to obtain accurate mean flow and turbulent mixing fields. The behavior of two micromixing models is discussed: the Euclidean minimum spanning tree model and the modified Curl coalescence dispersion model. The impact of the micromixing model choice on the results in physical space is small, although some influence becomes visible as the amount of local extinction increases. Scatter plots and profiles of conditional means and variances of thermochemical quantities, conditioned on the mixture fraction, are discussed both within and downstream of the recirculation region. A distinction is made between local extinction and incomplete combustion, based on the CO species mass fraction. The differences in qualitative behavior between the micromixing models are explained and quantitative comparison to experimental data is made. (author)

  17. Amdoparvovirus Infection in Red Pandas ( Ailurus fulgens).

    Science.gov (United States)

    Alex, Charles E; Kubiski, Steven V; Li, Linlin; Sadeghi, Mohammadreza; Wack, Raymund F; McCarthy, Megan A; Pesavento, Joseph B; Delwart, Eric; Pesavento, Patricia A

    2018-01-01

    Aleutian mink disease virus is the type species in the genus Amdoparvovirus, and in mink and other Mustelidae can cause either subclinical disease or fatal chronic immune stimulation and immune complex disease. The authors describe a novel amdoparvovirus in the endangered red panda ( Ailurus fulgens), discovered using viral metagenomics. The authors analyzed the prevalence, tissue distribution, and disease association by PCR, in situ hybridization, electron microscopy, and histology in a group of 6 red pandas from a single zoological collection. The study incorporates a fecal shedding survey and analysis of tissues from 4 necropsied animals over a 12-year span. The tentatively named red panda amdoparvovirus (RpAPV) was detected in the feces and/or tissues of all animals tested. At necropsy of 1 geriatric animal, infection was associated with pyogranulomatous peritonitis, pancreatitis, and myocarditis. Other animals had detectable low-level viral nucleic acid in lymph nodes and both oral and intestinal epithelium at the time of necropsy. Full-length genome sequences of RpAPV strains from 2 animals had 12% sequence divergence, demonstrating genetic diversity even among in-contact animals. RpAPV is a persistent infection in this cohort of red pandas, and has variable clinical expression.

  18. Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

    KAUST Repository

    Lee, O. O.; Yang, J.; Bougouffa, S.; Wang, Y.; Batang, Zenon B.; Tian, R.; Al-Suwailem, A.; Qian, P.-Y.

    2012-01-01

    -pyrosequencing technique to investigate the bacterial communities associated with three stony Scleractinea and two soft Octocorallia corals from three locations in the Red Sea. Our results revealed highly diverse bacterial communities in the Red Sea corals, with more than

  19. 78 FR 59005 - Endangered and Threatened Species; Take of Anadromous Fish

    Science.gov (United States)

    2013-09-25

    ... and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS... with Section 10(a)(1)(A) of the ESA of 1973 (16 U.S.C. 1531-1543) and regulations governing listed fish.... Applications Received Permit 1415 The U.S. Fish and Wildlife Services' (USFWS) Red Bluff Fish and Wildlife...

  20. Engineering of red cells of Arabidopsis thaliana and comparative genome-wide gene expression analysis of red cells versus wild-type cells.

    Science.gov (United States)

    Shi, Ming-Zhu; Xie, De-Yu

    2011-04-01

    We report metabolic engineering of Arabidopsis red cells and genome-wide gene expression analysis associated with anthocyanin biosynthesis and other metabolic pathways between red cells and wild-type (WT) cells. Red cells of A. thaliana were engineered for the first time from the leaves of production of anthocyanin pigment 1-Dominant (pap1-D). These red cells produced seven anthocyanin molecules including a new one that was characterized by LC-MS analysis. Wild-type cells established as a control did not produce anthocyanins. A genome-wide microarray analysis revealed that nearly 66 and 65% of genes in the genome were expressed in the red cells and wild-type cells, respectively. In comparison with the WT cells, 3.2% of expressed genes in the red cells were differentially expressed. The expression levels of 14 genes involved in the biosynthetic pathway of anthocyanin were significantly higher in the red cells than in the WT cells. Microarray and RT-PCR analyses demonstrated that the TTG1-GL3/TT8-PAP1 complex regulated the biosynthesis of anthocyanins. Furthermore, most of the genes with significant differential expression levels in the red cells versus the WT cells were characterized with diverse biochemical functions, many of which were mapped to different metabolic pathways (e.g., ribosomal protein biosynthesis, photosynthesis, glycolysis, glyoxylate metabolism, and plant secondary metabolisms) or organelles (e.g., chloroplast). We suggest that the difference in gene expression profiles between the two cell lines likely results from cell types, the overexpression of PAP1, and the high metabolic flux toward anthocyanins.

  1. Morphology-controllable growth of GdVO4:Eu3+ nano/microstructures for an optimum red luminescence

    Science.gov (United States)

    Yang, Liusai; Li, Guangshe; Zhao, Minglei; Zheng, Jing; Guan, Xiangfeng; Li, Liping

    2012-06-01

    Chemically tailoring microstructures for an optimum red luminescence is a subject at the forefront of many disciplines, which still remains a challenge due to a poor knowledge about the roles of defects in structures. In this work, GdVO4 :Eu3+ nano/microstructures of different morphologies, including tomato-like, cookie-circle-like, and ellipsoidal-like nanoparticles, and microspheroids were synthesized via a simple hydrothermal route using trisodium citrate as a capping agent. During the growth processes, the types of vanadyl ions were adjusted by varying pH value to control the morphologies and nano/microstructures with the help of trisodium citrate. The possible mechanisms for the growth processes into diverse morphologies are presented. Further, a systematic study on defect characteristics pertinent to these diverse morphologies has been explored to achieve an optimum red luminescence. The ability is clearly shown to generate different nano/microstructures of diverse morphologies and varied defect concentrations, which provides a great opportunity for morphological control in tailoring the red luminescence property for many technological applications.

  2. Cross shelf benthic biodiversity patterns in the Southern Red Sea

    KAUST Repository

    Ellis, Joanne; Anlauf, Holger; Kurten, Saskia; Lozano-Corté s, Diego; Alsaffar, Zahra Hassan Ali; Curdia, Joao; Jones, Burton; Carvalho, Susana

    2017-01-01

    The diversity of coral reef and soft sediment ecosystems in the Red Sea has to date received limited scientific attention. This study investigates changes in the community composition of both reef and macrobenthic communities along a cross shelf gradient. Coral reef assemblages differed significantly in species composition and structure with location and depth. Inner shelf reefs harbored less abundant and less diverse coral assemblages with higher percentage macroalgae cover. Nutrient availability and distance from the shoreline were significantly related to changes in coral composition and structure. This study also observed a clear inshore offshore pattern for soft sediment communities. In contrast to the coral reef patterns the highest diversity and abundance of soft sediment communities were recorded at the inshore sites, which were characterized by a higher number of opportunistic polychaete species and bivalves indicative of mild disturbance. Sediment grain size and nutrient enrichment were important variables explaining the variability. This study aims to contribute to our understanding of ecosystem processes and biodiversity in the Red Sea region in an area that also has the potential to provide insight into pressing topics, such as the capacity of reef systems and benthic macrofaunal organisms to adapt to global climate change.

  3. Cross shelf benthic biodiversity patterns in the Southern Red Sea

    KAUST Repository

    Ellis, Joanne

    2017-03-21

    The diversity of coral reef and soft sediment ecosystems in the Red Sea has to date received limited scientific attention. This study investigates changes in the community composition of both reef and macrobenthic communities along a cross shelf gradient. Coral reef assemblages differed significantly in species composition and structure with location and depth. Inner shelf reefs harbored less abundant and less diverse coral assemblages with higher percentage macroalgae cover. Nutrient availability and distance from the shoreline were significantly related to changes in coral composition and structure. This study also observed a clear inshore offshore pattern for soft sediment communities. In contrast to the coral reef patterns the highest diversity and abundance of soft sediment communities were recorded at the inshore sites, which were characterized by a higher number of opportunistic polychaete species and bivalves indicative of mild disturbance. Sediment grain size and nutrient enrichment were important variables explaining the variability. This study aims to contribute to our understanding of ecosystem processes and biodiversity in the Red Sea region in an area that also has the potential to provide insight into pressing topics, such as the capacity of reef systems and benthic macrofaunal organisms to adapt to global climate change.

  4. Acidification of sandy grasslands - consequences for plant diversity

    DEFF Research Database (Denmark)

    Olsson, Pål Axel; Mårtensson, Linda-Maria; Bruun, Hans Henrik

    2009-01-01

    soil; a number of nationally red-listed species showed a similar pattern. Plant species diversity and number of red-listed species increased with slope. Where the topsoil had been acidified, limestone was rarely present above a depth of 30 cm. The presence of limestone restricts the availability......Questions: (1) Does soil acidification in calcareous sandy grasslands lead to loss of plant diversity? (2) What is the relationship between the soil content of lime and the plant availability of mineral nitrogen (N) and phosphorus (P) in sandy grasslands? Location: Sandy glaciofluvial deposits......). Environmental variables were recorded at each plot, and soil samples were analysed for exchangeable P and N, as well as limestone content and pH. Data were analysed with regression analysis and canonical correspondence analysis. Results: Plant species richness was highest on weakly acid to slightly alkaline...

  5. After continents divide: Comparative phylogeography of reef fishes from the Red Sea and Indian Ocean

    KAUST Repository

    Dibattista, Joseph D.; Berumen, Michael L.; Gaither, Michelle R.; Rocha, Luiz A.; Eble, Jeff A.; Choat, John Howard; Craig, Matthew T.; Skillings, Derek J.; Bowen, Brian W.

    2013-01-01

    Aim: The Red Sea is a biodiversity hotspot characterized by a unique marine fauna and high endemism. This sea began forming c. 24 million years ago with the separation of the African and Arabian plates, and has been characterized by periods of desiccation, hypersalinity and intermittent connection to the Indian Ocean. We aim to evaluate the impact of these events on the genetic architecture of the Red Sea reef fish fauna. Location: Red Sea and Western Indian Ocean. Methods: We surveyed seven reef fish species from the Red Sea and adjacent Indian Ocean using mitochondrial DNA cytochrome c oxidase subunit I and cytochrome b sequences. To assess genetic variation and evolutionary connectivity within and between these regions, we estimated haplotype diversity (h) and nucleotide diversity (π), reconstructed phylogenetic relationships among haplotypes, and estimated gene flow and time of population separation using Bayesian coalescent-based methodology. Results: Our analyses revealed a range of scenarios from shallow population structure to diagnostic differences that indicate evolutionary partitions and possible cryptic species. Conventional molecular clocks and coalescence analyses indicated time-frames for divergence between these bodies of water ranging from 830,000 years to contemporary exchange or recent range expansion. Colonization routes were bidirectional, with some species moving from the Indian Ocean to the Red Sea compared with expansion out of the Red Sea for other species. Main conclusions: We conclude that: (1) at least some Red Sea reef fauna survived multiple salinity crises; (2) endemism is higher in the Red Sea than previously reported; and (3) the Red Sea is an evolutionary incubator, occasionally contributing species to the adjacent Indian Ocean. The latter two conclusions - elevated endemism and species export - indicate a need for enhanced conservation priorities for the Red Sea. © 2013 Blackwell Publishing Ltd.

  6. After continents divide: Comparative phylogeography of reef fishes from the Red Sea and Indian Ocean

    KAUST Repository

    Dibattista, Joseph D.

    2013-01-07

    Aim: The Red Sea is a biodiversity hotspot characterized by a unique marine fauna and high endemism. This sea began forming c. 24 million years ago with the separation of the African and Arabian plates, and has been characterized by periods of desiccation, hypersalinity and intermittent connection to the Indian Ocean. We aim to evaluate the impact of these events on the genetic architecture of the Red Sea reef fish fauna. Location: Red Sea and Western Indian Ocean. Methods: We surveyed seven reef fish species from the Red Sea and adjacent Indian Ocean using mitochondrial DNA cytochrome c oxidase subunit I and cytochrome b sequences. To assess genetic variation and evolutionary connectivity within and between these regions, we estimated haplotype diversity (h) and nucleotide diversity (π), reconstructed phylogenetic relationships among haplotypes, and estimated gene flow and time of population separation using Bayesian coalescent-based methodology. Results: Our analyses revealed a range of scenarios from shallow population structure to diagnostic differences that indicate evolutionary partitions and possible cryptic species. Conventional molecular clocks and coalescence analyses indicated time-frames for divergence between these bodies of water ranging from 830,000 years to contemporary exchange or recent range expansion. Colonization routes were bidirectional, with some species moving from the Indian Ocean to the Red Sea compared with expansion out of the Red Sea for other species. Main conclusions: We conclude that: (1) at least some Red Sea reef fauna survived multiple salinity crises; (2) endemism is higher in the Red Sea than previously reported; and (3) the Red Sea is an evolutionary incubator, occasionally contributing species to the adjacent Indian Ocean. The latter two conclusions - elevated endemism and species export - indicate a need for enhanced conservation priorities for the Red Sea. © 2013 Blackwell Publishing Ltd.

  7. Red wine: A drink to your heart

    Science.gov (United States)

    Saleem, T.S. Mohamed; Basha, S. Darbar

    2010-01-01

    Mortality and morbidity are still high in cardiovascular disease (CVD). Myocardial ischemia reperfusion injury leading to myocardial infarction is one of the most frequent causes of the death in humans. Atherosclerosis and generation of reactive oxygen species through oxidative stress is the major risk factor for CVD. From the literature collection, it has been identified that moderate consumption of red wine helps in preventing CVD through several mechanisms, including increasing the high-density lipoprotein cholesterol plasma levels, decreasing platelet aggregation, by antioxidant effects, and by restoration of endothelial function. The aim of this review is to discuss the accumulating evidence that suggests that red wine possesses a diverse range of biological actions and may be beneficial in the prevention of CVD. PMID:21264180

  8. Occurrence and diversity of arthropod-transmitted pathogens in red foxes (Vulpes vulpes) in western Austria, and possible vertical (transplacental) transmission of Hepatozoon canis.

    Science.gov (United States)

    Hodžić, Adnan; Mrowietz, Naike; Cézanne, Rita; Bruckschwaiger, Pia; Punz, Sylvia; Habler, Verena Elisabeth; Tomsik, Valentina; Lazar, Judit; Duscher, Georg G; Glawischnig, Walter; Fuehrer, Hans-Peter

    2018-03-01

    Red fox (Vulpes vulpes) is the most abundant wild canid species in Austria, and it is a well-known carrier of many pathogens of medical and veterinary concern. The main aim of the present study was to investigate the occurrence and diversity of protozoan, bacterial and filarial parasites transmitted by blood-feeding arthropods in a red fox population in western Austria. Blood (n = 351) and spleen (n = 506) samples from foxes were examined by PCR and sequencing and the following pathogens were identified: Babesia canis, Babesia cf. microti (syn. Theileria annae), Hepatozoon canis, Anaplasma phagocytophilum, Candidatus Neoehrlichia sp. and Bartonella rochalimae. Blood was shown to be more suitable for detection of Babesia cf. microti, whilst the spleen tissue was better for detection of H. canis than blood. Moreover, extremely low genetic variability of H. canis and its relatively low prevalence rate observed in this study may suggest that the parasite has only recently been introduced in the sampled area. Furthermore, the data presented here demonstrates, for the first time, the possible vertical transmission of H. canis from an infected vixen to the offspring, and this could explain the very high prevalence in areas considered free of its main tick vector(s).

  9. Characterization of the gut microbiota in the red panda (Ailurus fulgens.

    Directory of Open Access Journals (Sweden)

    Fanli Kong

    Full Text Available The red panda is the only living species of the genus Ailurus. Like giant pandas, red pandas are also highly specialized to feed mainly on highly fibrous bamboo. Although several studies have focused on the gut microbiota in the giant panda, little is known about the gut microbiota of the red panda. In this study, we characterized the fecal microbiota from both wild (n = 16 and captive (n = 6 red pandas using a pyrosequecing based approach targeting the V1-V3 hypervariable regions of the 16S rRNA gene. Distinct bacterial communities were observed between the two groups based on both membership and structure. Wild red pandas maintained significantly higher community diversity, richness and evenness than captive red pandas, the communities of which were skewed and dominated by taxa associated with Firmicutes. Phylogenetic analysis of the top 50 OTUs revealed that 10 of them were related to known cellulose degraders. To the best of our knowledge, this is the first study of the gut microbiota of the red panda. Our data suggest that, similar to the giant panda, the gut microbiota in the red panda might also play important roles in the digestion of bamboo.

  10. Species delimitation, genetic diversity and population historical dynamics of Cycas diannanensis (Cycadaceae occurring sympatrically in the Red River region of China

    Directory of Open Access Journals (Sweden)

    Liu eJian

    2015-09-01

    Full Text Available Delimitating species boundaries could be of critical importance when evaluating the species’ evolving process and providing guidelines for conservation genetics. Here, species delimitation was carried out on three endemic and endangered Cycas species with resembling morphology and overlapped distribution range along the Red River (Yuanjiang in China: Cycas diananensis Z. T. Guan et G. D. Tao, Cycas parvula S. L. Yang and Cycas multiovula D. Y. Wang. A total of 137 individuals from 15 populations were genotyped by using three chloroplastic (psbA-trnH, atpI-atpH and trnL-rps4 and two single copy nuclear (RPB1 and SmHP DNA sequences. Basing on the carefully morphological comparison and cladistic haplotype aggregation (CHA analysis, we propose all the populations as one species, with the rest two incorporated into C. diannanensis. Genetic diversity and structure analysis of the conflated C. diannanensis revealed this species possessed a relative lower genetic diversity than estimates of other Cycas species. The higher genetic diversity among populations and relative lower genetic diversity within populations, as well as obvious genetic differentiation among populations inferred from chloroplastic DNA (cpDNA suggested a recent genetic loss within this protected species. Additionally, a clear genetic structure of C. diannanensis corresponding with geography was detected based on cpDNA, dividing its population ranges into Yuanjiang-Nanhun basin and Ejia-Jiepai basin groups. Demographical history analyses based on combined cpDNA and one nuclear DNA (nDNA SmHP both showed the population size of C. diannanensis began to decrease in Quaternary glaciation with no subsequent expansion, while another nDNA RPB1 revealed a more recent sudden expansion after long-term population size contraction, suggesting its probable bottleneck events in history. Our findings offer grounded views for clarifying species boundaries of C. diannanensis when determining the

  11. Genetic diversity of the Acropora-associated hydrozoans: new insight from the Red Sea

    KAUST Repository

    Maggioni, Davide; Montano, Simone; Arrigoni, Roberto; Galli, Paolo; Puce, Stefania; Pica, Daniela; Berumen, Michael L.

    2017-01-01

    To date, four nominal species and several other unidentified species of Zanclea hydrozoans are known to live symbiotically with scleractinians, and recent surveys reported this association also in the Red Sea. Previous molecular studies showed

  12. Chloroplast microsatellites reveal population genetic diversity in red pine, Pinus resinosa Ait

    Science.gov (United States)

    Craig S. Echt; L.L. DeVerno; M. Anzidei; G.G. Vendramin

    1998-01-01

    Variation in paternally inherited chloroplast microsatellite (cpSSR) DNA was used to study population genetic structure in red pine (Pinus resinosa Ait.), a species characterized by morphological uniformity, no allozyme variation, and limited RAPD variation. Using nine cpSSR loci, a total of 23 chloroplast haplotypes and 25 cpSSR alleles were were...

  13. Weed species diversity in organic and integrated farming systems

    Directory of Open Access Journals (Sweden)

    Magdalena Jastrzębska

    2013-10-01

    Full Text Available Phytosociological data were collected in 1994–1996 in plots (relevés at the Research Station for Organic Farming and Conservation Breeding of the Polish Academy of Sciences in Popielno included in a large-area experiment conducted according to the concept and method proposed by Prof. S. Nawrocki. In a four-field crop rotation (root crops – spring barley undersown with red clover and grasses – red clover/grass mixture – winter triticale, each field was divided into two management units, organic and integrated. Data were collected in relevés by the Braun-Blanquet method, each year at the peak of the growing season. Weed abundance (% cover in cultivated fields and the number of weed species (species richness in crops were determined, which provided a basis for calculating the Shannon-Wiener indices of species diversity and evenness, and the Rényi profiles. The qualitative (species and quantitative structure of weed communities was compared using the Sørensen index. A total of 115 weed taxa (species, subspecies and varieties were identified in the examined agro-phytocenoses. Echinochloa crus-galli, Chenopodium album, Matricaria maritima subsp. inodora, Capsella bursa-pastoris, Thlaspi arvense and Stellaria media were the most abundant. Weed infestation was slightly higher in the organic farming system than in the integrated system. Organic farming contributed to higher weed species diversity in root crops, red clover/grass mixtures and winter triticale. Weed species richness was reduced in red clover/grass stands, while root crops and – to a lesser degree – spring barley undersown with red clover and grasses decreased weed species diversity. The species composition and in particular the quantitative structure of weeds were affected by crop species and cultivation regime rather than by the farming system. Weed communities of crops grown under organic and integrated farming systems were more similar with regard to species composition

  14. Ongoing decline of shark populations in the Eastern Red Sea

    KAUST Repository

    Spaet, Julia L.Y.

    2016-06-30

    Information on the abundance and diversity of Red Sea elasmobranchs is notoriously scarce, even though sharks are among the most profitable fisheries of the region. Effective conservation would ideally entail baselines on pristine conditions, yet no such data is available for the Red Sea. To collect distribution and abundance data on Red Sea elasmobranchs, we conducted a dedicated longline and Baited Remote Underwater Video system (BRUVs) sampling program along the entire Red Sea coast of Saudi Arabia over the course of two years. Both survey techniques were opportunistically employed at central and southern Saudi Arabian (SA) Red Sea reef systems. In addition, BRUVs were employed in the northern SA Red Sea and at selected reef systems in Sudan. Shark catch per unit effort (CPUE) data for BRUVs and longline surveys were compared to published data from non-Red Sea reef systems. This comparison revealed CPUE estimates several orders of magnitude lower for both survey methods in the SA Red Sea compared to other reef systems around the world. Catch per unit effort values of BRUVs on Sudanese reefs on the contrary were within the range of estimates from various locations where sharks are considered common. We argue that decades of heavy fishing pressure on Red Sea marine resources has significantly altered the community structure of SA Red Sea reefs. There is an urgent need to establish effective management strategies for species of highest conservation concern. Our results have the potential to be used as a baseline, if such management strategies were to be established. © 2016 Elsevier Ltd

  15. Extremum seeking to control the amplitude and frequency of a pulsed jet for bluff body drag reduction

    Science.gov (United States)

    Brackston, Rowan D.; Wynn, Andrew; Morrison, Jonathan F.

    2016-10-01

    Feedback control of fluid flows presents a challenging problem due to nonlinear dynamics and unknown optimal operating conditions. Extremum seeking control presents a suitable method for many flow control situations but involves its own challenges. In this paper, we provide a brief analysis of the extremum seeking method, with attention to modifications that we find to be advantageous. In particular, we present an adaptation for optimisation of the frequency of a harmonic input signal, a common scenario for open-loop flow control systems. We then present results from the experimental implementation of our modified method to the open-loop control system of Oxlade et al. (J Fluid Mech 770:305-318, 2015), an axisymmetric bluff-body wake, forced by a pulsed jet. We find that the system is able to achieve optimal operating conditions in both the amplitude and frequency of the harmonic input signal, and is able to largely reject the disturbances arising from measurements of a highly turbulent flow. We finally show the ability of the extremum seeking system to adapt to changing conditions.

  16. Evidence of different red emissions in irradiated germanosilicate materials

    Energy Technology Data Exchange (ETDEWEB)

    Alessi, A., E-mail: antonino.alessi@univ-st-etienne.fr [Univ-Lyon, Laboratoire H. Curien, UMR CNRS 5516, Université Jean Monnet, 18 rue du Pr. Benoît Lauras, 42000 Saint-Etienne (France); Di Francesca, D. [Univ-Lyon, Laboratoire H. Curien, UMR CNRS 5516, Université Jean Monnet, 18 rue du Pr. Benoît Lauras, 42000 Saint-Etienne (France); Agnello, S. [Dipartimento di Fisica e Chimica, Università di Palermo, I-90123 Palermo (Italy); Girard, S. [Univ-Lyon, Laboratoire H. Curien, UMR CNRS 5516, Université Jean Monnet, 18 rue du Pr. Benoît Lauras, 42000 Saint-Etienne (France); Cannas, M. [Dipartimento di Fisica e Chimica, Università di Palermo, I-90123 Palermo (Italy); Richard, N. [CEA, DAM, DIF, F91297 Arpajon (France); Boukenter, A.; Ouerdane, Y. [Univ-Lyon, Laboratoire H. Curien, UMR CNRS 5516, Université Jean Monnet, 18 rue du Pr. Benoît Lauras, 42000 Saint-Etienne (France)

    2016-09-15

    This experimental investigation is focused on a radiation induced red emission in Ge doped silica materials, elaborated with different methods and processes. The differently irradiated samples as well as the pristine ones were analyzed with various spectroscopic techniques, such as confocal microscopy luminescence (CML), time resolved luminescence (TRL), photoluminescence excitation (PLE) and electron paramagnetic resonance (EPR). Our data prove that irradiation induces a red luminescence related to the presence of the Ge atoms. Such emission features a photoexcitation spectrum in the UV-blue spectral range and, TRL measurements show that its decrease differs from a single exponential law with a lifetime of tens of nanoseconds. CML measurements under laser at 633 nm evidenced the lack of correlation of the emission here reported with that of the Ge- or Si- non bridging oxygen hole centers. Moreover, our EPR experiments highlighted the lack of correlation between the red emitting defect with other radiation induced paramagnetic centers such as the E′Ge and Ge(2). The relation of the investigated emission with the H(II) defects, previously considered as responsible for a red emission, can not be totally excluded. - Highlights: • Composite nature of the red emission in Ge-doped doped silica materials. • Experimental study with various spectroscopic techniques and on different samples. • Time resolved and stationary characterization of an new red emission. • Study of the spatial distributions of diverse red emissions in optical fibers.

  17. Red Sea as a source for bioprospecting

    KAUST Repository

    Kodzius, Rimantas

    2015-12-12

    King-Abdullah University of Science and Technology (KAUST) is located on the shores of the Red Sea in Saudi Arabia. The Red Sea is well known for its unique environment, harboring various microbes capable of surviving in salty brines. We collected sediment samples from brine pool adjacent to the Thuwal cold seeps in the Red Sea. The taxonomic analysis showed the diversity and abundance of bacterial and archaeal operational taxonomic units (OUT). Recently we established in the laboratory a microdroplet technology to encapsulate single cells. This technology enables us to analyze single-cell genomes and perform the high-throughput screening. The genomes of both cultivable and uncultivable organisms can be analyzed. We envision the collection of complimentary data, obtained by various techniques, such as single-cell genomics, metagenomics, and transcriptomics. That will enable us not only to understand the environment and microorganism communities but also will allow to discover the previously unknown genes, pathways, and whole genomes. These data will facilitate the enhancement of biological and chemical producers, and pave the way for bioprospecting.

  18. A rotating bluff-body disc for reduced variability in wind tunnel aerosol studies.

    Science.gov (United States)

    Koehler, Kirsten A; Anthony, T Renee; van Dyke, Michael; Volckens, John

    2011-01-01

    A rotating bluff-body disc (RBD) was developed to reduce spatiotemporal variability associated with sampling supermicron aerosol in low-velocity wind tunnels. The RBD is designed to rotate eight personal aerosol samplers around a circular path in a forward-facing plane aligned with the wind tunnel cross section. Rotation of the RBD allows each sampler to traverse an identical path about the wind tunnel cross section, which reduces the effects of spatial heterogeneity associated with dispersing supermicron aerosol in low-velocity wind tunnels. Samplers are positioned on the face of the RBD via sampling ports, which connect to an air manifold on the back of the disc. Flow through each sampler was controlled with a critical orifice or needle valve, allowing air to be drawn through the manifold with a single pump. A metal tube, attached to this manifold, serves as both the axis of rotation and the flow conduction path (between the samplers and the vacuum source). Validation of the RBD was performed with isokinetic samplers and 37-mm cassettes. For facing-the-wind tests, the rotation of the RBD significantly decreased intra-sampler variability when challenged with particle diameters from 1 to 100 μm. The RBD was then employed to determine the aspiration efficiency of Institute of Occupational Medicine (IOM) personal samplers under a facing-the-wind condition. Operation of IOM samplers on the RBD reduced the between-sampler variability for all particle sizes tested.

  19. Phylogenetic Diversity of Cephalopoda (Animalia:Mollusca) Along the Saudi Arabian Red Sea Coastline

    KAUST Repository

    Byron, Gordon

    2016-01-01

    ecosystems, serving as part of the food chain and exhibiting population increases due to targeted teleost fisheries and global climate change. In order to assess the biodiversity of Cephalopoda in the Saudi Arabian Red Sea, 87 specimens were collected from 25

  20. Genetic variability within the Polish population of red fox (Vulpes vulpes – preliminary results

    Directory of Open Access Journals (Sweden)

    Magdalena Zatoń-Dobrowolska

    2016-09-01

    Full Text Available Red fox (Vulpes vulpes represents family Canidae and is a very common predator in Poland. Foxes are present throughout all the country in a different geographical regions and habitats. The analyzed dataset consisted of 130 red foxes (Vulpes vulpes. There were 24 microsatellite sequences studied. The observed (HO and expected (HS heterozygosities were comparable within respective loci. The low genetic diversity of the population was found.

  1. Investigation and Isolation of Cellulase-Producing microorganisms in the Red Sea

    KAUST Repository

    Fatani, Siham

    2016-05-01

    Cellulolytic microorganisms are considered to be key players in biorefinery, especially for the utilization of plant biomass. These organisms have been isolated from various environments. The Red Sea is one of the seas with high biodiversity and a unique environment, characterized by high water temperature and high salinity . However, there is little information regarding cellulases in Red Sea environments. The aim of the present study is to evaluate the Red Sea as a gene resource for microbial cellulase. I first surveyed microbial cellulases in the Red Sea using a method called metagenomes, and then investigated their abundance and diversity. My survey revealed that the Red Sea biome has a substantial abundance and a wide range of cellulase enzymes with substantial abundance, when compared with those in other environments. Next, I tried to isolate cellulase-active microorganisms from the Red Sea and I successfully obtained seven strains of four different taxonomic groups. These strains showed a similarity of 99% identity to Aspergillus ustus, 99% to Staphylococcus pasteuri, 99% to Bacillus aerius and 99% to Bacillus subtilis. The enzyme assay I conducted, revealed that these strains actually secreted active cellulases. These results suggest that the Red Sea environment can be, indeed, an excellent gene resource of microbial cellulases.

  2. A catalogue of 136 microbial draft genomes from Red Sea metagenomes

    KAUST Repository

    Haroon, Mohamed

    2016-07-05

    Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultured representatives and single marker gene analyses, hence neglecting the substantial uncultured majority. Here, we report 136 microbial genomes (completion minus contamination is ≥50%) assembled from 45 metagenomes from eight stations spanning the Red Sea and taken from multiple depths between 10 to 500 m. Phylogenomic analysis showed that most of the retrieved genomes belong to seven different phyla of known marine microbes, but more than half representing currently uncultured species. The open-access data presented here is the largest number of Red Sea representative microbial genomes reported in a single study and will help facilitate future studies in understanding the physiology of these microorganisms and how they have adapted to the relatively harsh conditions of the Red Sea.

  3. A catalogue of 136 microbial draft genomes from Red Sea metagenomes

    KAUST Repository

    Haroon, Mohamed; Thompson, Luke R.; Parks, Donovan H.; Hugenholtz, Philip; Stingl, Ulrich

    2016-01-01

    Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultured representatives and single marker gene analyses, hence neglecting the substantial uncultured majority. Here, we report 136 microbial genomes (completion minus contamination is ≥50%) assembled from 45 metagenomes from eight stations spanning the Red Sea and taken from multiple depths between 10 to 500 m. Phylogenomic analysis showed that most of the retrieved genomes belong to seven different phyla of known marine microbes, but more than half representing currently uncultured species. The open-access data presented here is the largest number of Red Sea representative microbial genomes reported in a single study and will help facilitate future studies in understanding the physiology of these microorganisms and how they have adapted to the relatively harsh conditions of the Red Sea.

  4. A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

    Science.gov (United States)

    Haroon, Mohamed F; Thompson, Luke R; Parks, Donovan H; Hugenholtz, Philip; Stingl, Ulrich

    2016-07-05

    Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultured representatives and single marker gene analyses, hence neglecting the substantial uncultured majority. Here, we report 136 microbial genomes (completion minus contamination is ≥50%) assembled from 45 metagenomes from eight stations spanning the Red Sea and taken from multiple depths between 10 to 500 m. Phylogenomic analysis showed that most of the retrieved genomes belong to seven different phyla of known marine microbes, but more than half representing currently uncultured species. The open-access data presented here is the largest number of Red Sea representative microbial genomes reported in a single study and will help facilitate future studies in understanding the physiology of these microorganisms and how they have adapted to the relatively harsh conditions of the Red Sea.

  5. Seasonal dynamics in the relative density of aquatic flora along some coastal areas of the Red Sea, Tabuk, Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Abid Ali Ansari

    2016-09-01

    Full Text Available Plants are the producers of all autotrophic ecosystems’ and are the base of the food chain taking energy from the sun and converting it into food for all other organisms through photosynthesis. Plants grow in certain places and seasons when the environmental factors are suitable for their germination, growth and developments that influence their diversity. Environmental factors can include abiotic factors such as temperature, light, moisture, soil nutrients; or biotic factors like competition from other plants or grazing by animals. Anthropogenic perturbations can also influence distribution patterns. Monitoring of ecological habitats and diversity of some aquatic flora along some coastal areas of Red Sea has been done to understand the dynamics of aquatic plants influenced by prevailing environmental and anthropogenic perturbations The results of this research showed that the summer season is the most suitable period for the study of aquatic plant diversity along the coastal sites of Red Sea. The aquatic flora had high relative density and diversity in April, May, June and July and these four months of the summer season are best for collection of aquatic plants from the selected coastal areas of Red Sea for medicinal purposes and ecological studies.

  6. Diversity and abundance of the bacterial community of the red Macroalga Porphyra umbilicalis: did bacterial farmers produce macroalgae?

    Directory of Open Access Journals (Sweden)

    Lilibeth N Miranda

    Full Text Available Macroalgae harbor microbial communities whose bacterial biodiversity remains largely uncharacterized. The goals of this study were 1 to examine the composition of the bacterial community associated with Porphyra umbilicalis Kützing from Schoodic Point, ME, 2 determine whether there are seasonal trends in species diversity but a core group of bacteria that are always present, and 3 to determine how the microbial community associated with a laboratory strain (P.um.1 established in the presence of antibiotics has changed. P. umbilicalis blades (n = 5, fall 2010; n = 5, winter 2011; n = 2, clonal P.um.1 were analyzed by pyrosequencing over two variable regions of the 16 S rDNA (V5-V6 and V8; 147,880 total reads. The bacterial taxa present were classified at an 80% confidence threshold into eight phyla (Bacteroidetes, Proteobacteria, Planctomycetes, Chloroflexi, Actinobacteria, Deinococcus-Thermus, Firmicutes, and the candidate division TM7. The Bacteroidetes comprised the majority of bacterial sequences on both field and lab blades, but the Proteobacteria (Alphaproteobacteria, Gammaproteobacteria were also abundant. Sphingobacteria (Bacteroidetes and Flavobacteria (Bacteroidetes had inverse abundances on natural versus P.um.1 blades. Bacterial communities were richer and more diverse on blades sampled in fall compared to winter. Significant differences were observed between microbial communities among all three groups of blades examined. Only two OTUs were found on all 12 blades, and only one of these, belonging to the Saprospiraceae (Bacteroidetes, was abundant. Lewinella (as 66 OTUs was found on all field blades and was the most abundant genus. Bacteria from the Bacteroidetes, Proteobacteria and Planctomycetes that are known to digest the galactan sulfates of red algal cell walls were well-represented. Some of these taxa likely provide essential morphogenetic and beneficial nutritive factors to P. umbilicalis and may have had

  7. Environmental impacts of tourism in the Gulf and the Red Sea.

    Science.gov (United States)

    Gladstone, William; Curley, Belinda; Shokri, Mohammad Reza

    2013-07-30

    The Gulf and Red Sea possess diverse coastal and marine environments that support rapidly expanding mass tourism. Despite the associated environmental risks, there is no analysis of the tourism-related literature or recent analysis of impacts. Environmental issues reported in 101 publications (25 from the Gulf, 76 from the Red Sea) include 61 purported impacts (27 from the Gulf, 45 from the Red Sea). Gulf literature includes quantitative studies (68% publications) and reviews (32%), and addresses mostly land reclamation and artificial habitats. Most Gulf studies come from Iran and UAE (64%). Red Sea literature includes quantitative studies (81%) and reviews (11%), with most studies occurring in Egypt (70%). The most published topics relate to coral breakage and its management. A full account of tourism's environmental impacts is constrained by limited tourism data, confounding of impacts with other coastal developments, lack of baseline information, shifting baselines, and fragmentation of research across disciplines. Copyright © 2012 Elsevier Ltd. All rights reserved.

  8. Ecological traits and environmental affinity explain Red Sea fish introduction into the Mediterranean.

    Science.gov (United States)

    Belmaker, Jonathan; Parravicini, Valeriano; Kulbicki, Michel

    2013-05-01

    Alien species are considered one of the prime threats to biodiversity, driving major changes in ecosystem structure and function. Identifying the traits associated with alien introduction has been largely restricted to comparing indigenous and alien species or comparing alien species that differ in abundance or impact. However, a more complete understanding may emerge when the entire pool of potential alien species is used as a control, information that is rarely available. In the eastern Mediterranean, the marine environment is undergoing an unparalleled species composition transformation, as a flood of aliens have entered from the Red Sea following the opening of the Suez Canal in 1869. In this study, we compile data on species traits, geographical distribution, and environmental affinity of the entire pool of reef-associated fish species in the Red Sea and more generally across the Indo-Pacific. We use this extensive data to identify the prime characteristics separating Red Sea species that have become alien in the Mediterranean from those that have not. We find that alien species occupy a larger range of environments in their native ranges, explaining their ability to colonize the seasonal Mediterranean. Red Sea species that naturally experience high maximum temperatures in their native range have a high probability of becoming alien. Thus, contrary to predictions of an accelerating number of aliens following increased water temperatures, hotter summers in this region may prevent the establishment of many alien species. We further find that ecological trait diversity of alien species is substantially more evenly spaced and more divergent than random samples from the pool of Red Sea species, pointing at additional processes, such as competition, promoting ecological diversity among alien species. We use these results to provide a first quantitative ranking of the potential of Red Sea species to become established in the eastern Mediterranean. © 2012 Blackwell

  9. Physicochemical Characteristics and Antioxidant Capacity in Yogurt Fortified with Red Ginseng Extract

    Science.gov (United States)

    Jung, Jieun; Paik, Hyun-Dong; Yoon, Hyun Joo; Jang, Hye Ji; Jeewanthi, Renda Kankanamge Chaturika; Jee, Hee-Sook; Lee, Na-Kyoung

    2016-01-01

    The objective of this study was to investigate characteristics and functionality of yogurt applied red ginseng extract. Yogurts added with red ginseng extract (0.5, 1, 1.5, and 2%) were produced using Lactobacillus acidophilus and Streptococcus thermophilus and stored at refrigerated temperature. During fermentation, pH was decreased whereas titratable aicidity and viable cell counts of L. acidophilus and S. thermophilus were increased. The composition of yogurt samples was measured on day 1, an increase of red ginseng extract content in yogurt resulted in an increase in lactose, protein, total solids, and ash content, whereas fat and moisture content decreased. The pH value and cell counts of L. acidophilus and S. thermophilus were declined, however titratable acidity was increased during storage period. The antioxidant capacity was measured as diverse methods. During refrigerated storage time, the value of antioxidant effect was decreased, however, yogurt fortified with red ginseng extract had higher capacity than plain yogurt. The antioxidant effect was improved in proportion to concentration of red ginseng extract. These data suggests that red ginseng extract could affect to reduce fermentation time of yogurt and enhance antioxidant capacity. PMID:27433113

  10. Physicochemical Characteristics and Antioxidant Capacity in Yogurt Fortified with Red Ginseng Extract.

    Science.gov (United States)

    Jung, Jieun; Paik, Hyun-Dong; Yoon, Hyun Joo; Jang, Hye Ji; Jeewanthi, Renda Kankanamge Chaturika; Jee, Hee-Sook; Li, Xiang; Lee, Na-Kyoung; Lee, Si-Kyung

    2016-01-01

    The objective of this study was to investigate characteristics and functionality of yogurt applied red ginseng extract. Yogurts added with red ginseng extract (0.5, 1, 1.5, and 2%) were produced using Lactobacillus acidophilus and Streptococcus thermophilus and stored at refrigerated temperature. During fermentation, pH was decreased whereas titratable aicidity and viable cell counts of L. acidophilus and S. thermophilus were increased. The composition of yogurt samples was measured on day 1, an increase of red ginseng extract content in yogurt resulted in an increase in lactose, protein, total solids, and ash content, whereas fat and moisture content decreased. The pH value and cell counts of L. acidophilus and S. thermophilus were declined, however titratable acidity was increased during storage period. The antioxidant capacity was measured as diverse methods. During refrigerated storage time, the value of antioxidant effect was decreased, however, yogurt fortified with red ginseng extract had higher capacity than plain yogurt. The antioxidant effect was improved in proportion to concentration of red ginseng extract. These data suggests that red ginseng extract could affect to reduce fermentation time of yogurt and enhance antioxidant capacity.

  11. Multiple diseases impact survival of pine species planted in red spine stands harvested in spatially variable retention patterns

    Science.gov (United States)

    M.E. Ostry; M.J. Moore; C.C. Kern; R.C. Venette; B.J. Palik

    2012-01-01

    Increasing the diversity of species and structure of red pine (Pinus resinosa) is often a management goal in stands simplified by practices such as fire suppression and plantation management in many areas of the Great Lakes Region. One approach to diversification is to convert predominantly even-aged, pure red pine stands to multi-cohort, mixed-...

  12. The status of coral reef ecology research in the Red Sea

    KAUST Repository

    Berumen, Michael L.

    2013-06-21

    The Red Sea has long been recognized as a region of high biodiversity and endemism. Despite this diversity and early history of scientific work, our understanding of the ecology of coral reefs in the Red Sea has lagged behind that of other large coral reef systems. We carried out a quantitative assessment of ISI-listed research published from the Red Sea in eight specific topics (apex predators, connectivity, coral bleaching, coral reproductive biology, herbivory, marine protected areas, non-coral invertebrates and reef-associated bacteria) and compared the amount of research conducted in the Red Sea to that from Australia\\'s Great Barrier Reef (GBR) and the Caribbean. On average, for these eight topics, the Red Sea had 1/6th the amount of research compared to the GBR and about 1/8th the amount of the Caribbean. Further, more than 50 % of the published research from the Red Sea originated from the Gulf of Aqaba, a small area (<2 % of the area of the Red Sea) in the far northern Red Sea. We summarize the general state of knowledge in these eight topics and highlight the areas of future research priorities for the Red Sea region. Notably, data that could inform science-based management approaches are badly lacking in most Red Sea countries. The Red Sea, as a geologically "young" sea located in one of the warmest regions of the world, has the potential to provide insight into pressing topics such as speciation processes as well as the capacity of reef systems and organisms to adapt to global climate change. As one of the world\\'s most biodiverse coral reef regions, the Red Sea may yet have a significant role to play in our understanding of coral reef ecology at a global scale. © 2013 Springer-Verlag Berlin Heidelberg.

  13. Characterization of bluff-body stabilized LPG jet diffusion flame with N2 dilution

    International Nuclear Information System (INIS)

    Kumar, P.; Mishra, D.P.

    2008-01-01

    Measurements of several parameters like flame length, soot free length fraction (SFLF), radiant fraction, gas temperature and emission levels are performed in coaxial LPG jet diffusion flame to provide an insight into the effect of lip thickness and inert addition on flame characteristics. The present measurements reveal that the visible flame length is found to be reduced with increase in lip thickness. In contrast, the flame length for all lip thicknesses gets enhanced by inert addition to the fuel stream, which can be attributed to the reduced diffusivity of the mixture gases. The SFLF is seen to be enhanced with N 2 addition due to decrease in the fuel concentration and flame temperature. However, the SFLF is reduced with increasing lip thickness of the bluff-body which is caused due to the reduction in induction period of soot formation. For all lip thickness, the NO x emission level is observed to be attenuated with inert (N 2 ) addition, which can be ascribed to reduction in residence time of gas mixture. Besides this, NO x emission level is enhanced with increasing lip thickness. The emission index of CO is found to be increased with nitrogen addition; in contrast, the EICO 2 is seen to be reduced, for all lip thickness. This can be attributed to attrition in residence time with inert addition that tends to inhibit the conversion of CO to CO 2 . Moreover, EICO is also observed to be attenuated while EICO 2 gets enhanced, with increasing lip thickness which might be due to the increased residence time of mixture gases

  14. A deep sea community at the Kebrit brine pool in the Red Sea

    KAUST Repository

    Vestheim, Hege; Kaartvedt, Stein

    2015-01-01

    Approximately 25 deep sea brine pools occur along the mid axis of the Red Sea. These hypersaline, anoxic, and acidic environments have previously been reported to host diverse microbial communities. We visited the Kebrit brine pool in April 2013

  15. Eco-evolutionary Red Queen dynamics regulate biodiversity in a metabolite-driven microbial system.

    Science.gov (United States)

    Bonachela, Juan A; Wortel, Meike T; Stenseth, Nils Chr

    2017-12-15

    The Red Queen Hypothesis proposes that perpetual co-evolution among organisms can result from purely biotic drivers. After more than four decades, there is no satisfactory understanding as to which mechanisms trigger Red Queen dynamics or their implications for ecosystem features such as biodiversity. One reason for such a knowledge gap is that typical models are complicated theories where limit cycles represent an idealized Red Queen, and therefore cannot be used to devise experimental setups. Here, we bridge this gap by introducing a simple model for microbial systems able to show Red Queen dynamics. We explore diverse biotic sources that can drive the emergence of the Red Queen and that have the potential to be found in nature or to be replicated in the laboratory. Our model enables an analytical understanding of how Red Queen dynamics emerge in our setup, and the translation of model terms and phenomenology into general underlying mechanisms. We observe, for example, that in our system the Red Queen offers opportunities for the increase of biodiversity by facilitating challenging conditions for intraspecific dominance, whereas stasis tends to homogenize the system. Our results can be used to design and engineer experimental microbial systems showing Red Queen dynamics.

  16. DIVERSITY OF THE TYPE 1 INTRON-ITS REGION OF THE 18S rRNA GENE IN PSEUDOGYMNOASCUS SPECIES FROM THE RED HILLS OF KANSAS.

    Science.gov (United States)

    Chen, Xi; Crupper, Scott S

    2016-09-01

    Gypsum caves found throughout the Red Hills of Kansas have the state's most diverse and largest population of cave-roosting bats. White-nose syndrome (WNS), a disease caused by the fungus Pseudogymnoascus destructans, which threatens all temperate bat species, has not been previously detected in the gypsum caves as this disease moves westward from the eastern United States. Cave soil was obtained from the gypsum caves, and using the polymerase chain reaction, a 624-nucleotide DNA fragment specific to the Type 1 intron-internal transcribed spacer region of the 18S rRNA gene from Pseudogymnoascus species was amplified. Subsequent cloning and DNA sequencing indicated P. destructans DNA was present, along with 26 uncharacterized Pseudogymnoascus DNA variants. However, no evidence of WNS was observed in bat populations residing in these caves.

  17. Phage and bacteria support mutual diversity in a narrowing staircase of coexistence

    DEFF Research Database (Denmark)

    Härter, Jan Olaf Mirko; Mitarai, Namiko; Sneppen, Kim

    2014-01-01

    arms race will typically favor high growth rate, but a phage that infects two bacterial strains differently can occasionally eliminate the fastest growing bacteria. This context-dependent fitness allows abrupt resetting of the 'Red-Queen's race' and constrains the local diversity.......The competitive exclusion principle states that phage diversity M should not exceed bacterial diversity N. By analyzing the steady-state solutions of multistrain equations, we find a new constraint: the diversity N of bacteria living on the same resources is constrained to be M or M+1 in terms...... of the diversity of their phage predators. We quantify how the parameter space of coexistence exponentially decreases with diversity. For diversity to grow, an open or evolving ecosystem needs to climb a narrowing 'diversity staircase' by alternatingly adding new bacteria and phages. The unfolding coevolutionary...

  18. Managing succession in conifer plantations: converting young red pine (Pinus resinosa Ait.) plantations to native forest types by thinning and underplantiing

    Science.gov (United States)

    William C. Parker; Ken A. Elliott; Daniel C. Dey; Eric Boysen; Steven G. Newmaster

    2001-01-01

    The effects of thinning on growth and survival of white pine (Pinus strobus L.), white ash (Fraxinus americana L.), and red oak (Quercus rubra L.), and understory plant diversity were examined in a young red pine (Pinus resinosa Ait.) plantation. Five years after thinning, seedling diameter,...

  19. Larval settlement preferences of Acropora palmata and Montastraea faveolata in response to diverse red algae

    Science.gov (United States)

    Ritson-Williams, R.; Arnold, S. N.; Paul, V. J.; Steneck, R. S.

    2014-03-01

    Settlement specificity can regulate recruitment but remains poorly understood for coral larvae. We studied larvae of the corals, Acropora palmata and Montastraea faveolata, to determine their rates of settlement and metamorphosis in the presence of ten species of red algae, including eight species of crustose coralline algae, one geniculated coralline and one encrusting peyssonnelid. Twenty to forty percent of larvae of A. palmata settled on coralline surfaces of Hydrolithon boergesenii, Lithoporella atlantica, Neogoniolithon affine, and Titanoderma prototypum, whereas none settled and metamorphosed on Neogoniolithon mamillare. Larvae of M. faveolata had 13-25 % settlement onto the surface of Amphiroa tribulus, H. boergesenii, N. affine, N. munitum, and T. prototypum, but had no settlement on the surface of N. mamillare, Porolithon pachydermum, and a noncoralline crust Peyssonnelia sp. Some of these algal species were common on Belizean reefs, but the species that induced the highest rates of larval settlement and metamorphosis tended to be rare and primarily found in low-light environments. The shallow coral, A. palmata, and the deeper coral, M. faveolata, both had increased larval settlement rates in the presence of only a few species of red algae found at deeper depths suggesting that patterns of coral distribution can only sometimes be related to the distribution of red algae species.

  20. Epidemiology of a Daphnia-multiparasite system and its implications for the red queen.

    Science.gov (United States)

    Auld, Stuart K J R; Hall, Spencer R; Duffy, Meghan A

    2012-01-01

    The Red Queen hypothesis can explain the maintenance of host and parasite diversity. However, the Red Queen requires genetic specificity for infection risk (i.e., that infection depends on the exact combination of host and parasite genotypes) and strongly virulent effects of infection on host fitness. A European crustacean (Daphnia magna)--bacterium (Pasteuria ramosa) system typifies such specificity and high virulence. We studied the North American host Daphnia dentifera and its natural parasite Pasteuria ramosa, and also found strong genetic specificity for infection success and high virulence. These results suggest that Pasteuria could promote Red Queen dynamics with D. dentifera populations as well. However, the Red Queen might be undermined in this system by selection from a more common yeast parasite (Metschnikowia bicuspidata). Resistance to the yeast did not correlate with resistance to Pasteuria among host genotypes, suggesting that selection by Metschnikowia should proceed relatively independently of selection by Pasteuria.

  1. A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

    KAUST Repository

    DiBattista, Joseph

    2015-11-03

    Aim The Red Sea is characterised by a unique fauna and historical periods of desiccation, hypersalinity and intermittent isolation. The origin and contemporary composition of reef-associated taxa in this region can illuminate biogeographical principles about vicariance and the establishment (or local extirpation) of existing species. Here we aim to: (1) outline the distribution of shallow water fauna between the Red Sea and adjacent regions, (2) explore mechanisms for maintaining these distributions and (3) propose hypotheses to test these mechanisms. Location Red Sea, Gulf of Aden, Arabian Sea, Arabian Gulf and Indian Ocean. Methods Updated checklists for scleractinian corals, fishes and non-coral invertebrates were used to determine species richness in the Red Sea and the rest of the Arabian Peninsula and assess levels of endemism. Fine-scale diversity and abundance of reef fishes within the Red Sea were explored using ecological survey data. Results Within the Red Sea, we recorded 346 zooxanthellate and azooxanthellate scleractinian coral species of which 19 are endemic (5.5%). Currently 635 species of polychaetes, 211 echinoderms and 79 ascidians have been documented, with endemism rates of 12.6%, 8.1% and 16.5% respectively. A preliminary compilation of 231 species of crustaceans and 137 species of molluscs include 10.0% and 6.6% endemism respectively. We documented 1071 shallow fish species, with 12.9% endemic in the entire Red Sea and 14.1% endemic in the Red Sea and Gulf of Aden. Based on ecological survey data of endemic fishes, there were no major changes in species richness or abundance across 1100 km of Saudi Arabian coastline. Main conclusions The Red Sea biota appears resilient to major environmental fluctuations and is characterized by high rates of endemism with variable degrees of incursion into the Gulf of Aden. The nearby Omani and Arabian Gulfs also have variable environments and high levels of endemism, but these are not consistently distinct

  2. Formation of early-middle Miocene red beds in the South China Sea: element geochemistry and mineralogy analysis

    Science.gov (United States)

    Lyu, X.; Liu, Z.

    2017-12-01

    The formation of oceanic red beds that usually present oxic and oligotrophic conditions with low sedimentation rate has been used to trace depositional paleoenvironment and paleoclimate change. Red beds overlying oceanic basalts were drilled at two adjacent Sites U1433 and U1434 of IODP Expedition 349 in the Southwest Subbasin of the South China Sea. The occurrence of early-middle Miocene red beds may indicate that at that time there was oxic and quiet marine environment in the deep South China Sea. To understand their formation of red-color, local depositional condition, and potential paleoceanographic significance, major elements (XRF), trace and rare earth elements (ICP-MS), Fe chemical speciation (modified sequential iron extraction procedure), and Fe oxic minerals (CBD and DRS) were analyzed. Geochemical and mineralogical data reveal that hematite and goethite are responsible for the reddish color and red beds were deposited under highly oxic, oligotrophic conditions with a little later hydrothermal influence in the South China Sea. Our results indicate that: (1) after treatment using the CBD procedure, the red samples presented a change in color to greenish, showing the iron oxides being responsible for the sediment color; (2) enriched Mn, depleted U, S enrichment factors, and negative Ce anomaly show that the water mass was pre-oxidized before transported to the study location; (3) low primary productivity was inferred from the lower P, Ba enrichment factors in red beds compared to non-red beds; (4) the excess Mo influx at the bottom may come from the later hydrothermal input; (5) the diverse Ca enrichment factors and correlations between Fe and Al suggest different allogenic sources for red beds at our two sites. We conclude that the red beds at Sites U1433 and U1434 despite their diverse sources both developed in externally oxidized water mass and low primary productivity conditions, and partially altered by hydrothermal fluids after their pelagic

  3. Integrating Fisheries Dependent and Independent Approaches to assess Fisheries, Abundance, Diversity, Distribution and Genetic Connectivity of Red Sea Elasmobranch Populations

    KAUST Repository

    Spaet, Julia L.

    2014-05-01

    The Red Sea has long been recognized as a global hotspot of marine biodiversity. Ongoing overfishing, however, is threatening this unique ecosystem, recently leading to the identification of the Red Sea as one of three major hotspots of extinction risk for sharks and rays worldwide. Elasmobranch catches in Saudi Arabian Red Sea waters are unregulated, often misidentified and unrecorded, resulting in a lack of species-specific landings information, which would be vital for the formulation of effective management strategies. Here we employed an integrated approach of fisheries dependent and independent survey methods combined with molecular tools to provide biological, ecological and fisheries data to aid in the assessment of the status of elasmobranch populations in the Red Sea. Over the course of two years, we conducted market surveys at the biggest Saudi Arabian fish market in Jeddah. Market landings were dominated by, mostly immature individuals - implying both recruitment and growth overfishing. Additionally, we employed baited remote underwater video (BRUVS) and longline surveys along almost the entire length of the Red Sea coast of Saudi Arabia as well as at selected reef systems in Sudan. The comparison of catch per unit effort (CPUE) data for Saudi Arabian Red Sea BRUVS and longline surveys to published data originating from non-Red Sea ocean systems revealed CPUE values several orders of magnitude lower for both survey methods in the Red Sea compared to other locations around the world. Finally, we infered the regional population structure of four commercially important shark species between the Red Sea and the Western Indian Ocean.We genotyped nearly 2000 individuals at the mitochondrial control region as well as a total of 20 microsatellite loci. Genetic homogeneity could not be rejected for any of the four species across the spatial comparison. Based on high levels of region-wide exploitation, we suggest that, for management purposes, the population

  4. Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes?

    Science.gov (United States)

    Iason, Glenn R.; O'Reilly-Wapstra, Julianne M.; Brewer, Mark J.; Summers, Ron W.; Moore, Ben D.

    2011-01-01

    A central issue in our understanding of the evolution of the diversity of plant secondary metabolites (PSMs) is whether or not compounds are functional, conferring an advantage to the plant, or non-functional. We examine the hypothesis that the diversity of monoterpene PSMs within a plant species (Scots pine Pinus sylvestris) may be explained by different compounds acting as defences against high-impact herbivores operating at different life stages. We also hypothesize that pairwise coevolution, with uncorrelated interactions, is more likely to result in greater PSM diversity, than diffuse coevolution. We tested whether up to 13 different monoterpenes in Scots pine were inhibitory to herbivory by slugs (Arion ater), bank voles (Clethrionomys glareolus), red deer (Cervus elaphus) and capercaillie (Tetrao urogallus), each of which attack trees at a different life stage. Plants containing more α-pinene were avoided by both slugs and capercaillie, which may act as reinforcing selective agents for this dominant defensive compound. Herbivory by red deer and capercaillie were, respectively, weakly negatively associated with δ3-carene, and strongly negatively correlated with the minor compound β-ocimene. Three of the four herbivores are probably contributory selective agents on some of the terpenes, and thus maintain some, but by no means all, of the phytochemical diversity in the species. The correlated defensive function of α-pinene against slugs and capercaillie is consistent with diffuse coevolutionary processes. PMID:21444308

  5. Sacramento River, Chico Landing to Red Bluff, California Bank Protection Project

    Science.gov (United States)

    1975-01-01

    i onwi de X X X X X X X (Turdus migratorius) Ruby-crowned kinglet Common-Nat i onwide X X X X X (Regulus calendula ) Water pipit Common-Nat i...City. In addition, State Point of Historical Interest, Glenn-011, Swifts Point, is located on the Sacramento River near Hamilton City and Glenn- Oil

  6. Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon

    NARCIS (Netherlands)

    Belila, A.; Abbas, B.; Fazaa, I.; Saidi, N.; Snoussi, M.; Hassen, A.; Muyzer, G.

    2013-01-01

    Several wastewater stabilization ponds (WSP) in Tunisia suffer periodically from the ‘red-water’ phenomenon due to blooming of purple sulfur bacteria, indicating that sulfur cycle is one of the main element cycles in these ponds. In this study, we investigated the microbial diversity of the El

  7. Improving Assessment of the Spectrum of Reward-Related Eating: The RED-13

    Directory of Open Access Journals (Sweden)

    Ashley E. Mason

    2017-05-01

    Full Text Available A diversity of scales capture facets of reward-related eating (RRE. These scales assess food cravings, uncontrolled eating, addictive behavior, restrained eating, binge eating, and other eating behaviors. However, these scales differ in terms of the severity of RRE they capture. We sought to incorporate the items from existing scales to broaden the 9-item Reward-based Eating Drive scale (RED-9; Epel et al., 2014, which assesses three dimensions of RRE (lack of satiety, preoccupation with food, and lack of control over eating, in order to more comprehensively assess the entire spectrum of RRE. In a series of 4 studies, we used Item Response Theory models to consider candidate items to broaden the RED-9. Studies 1 and 2 evaluated the abilities of additional items from existing scales to increase the RED-9’s coverage across the spectrum of RRE. Study 3 evaluated candidate items identified in Studies 1 and 2 in a new sample to assess the extent to which they accounted for more variance in areas less well-covered by the RED-9. Study 4 tested the ability of the RED-13 to provide consistent coverage across the range of the RRE spectrum. The resultant RED-13 accounted for greater variability than the RED-9 by reducing gaps in coverage of RRE in middle-to-low ranges. Like the RED-9, the RED-13 was positively correlated with BMI. The RED-13 was also positively related to a diagnosis of type 2 diabetes as well as cravings for sweet and savory foods. In summary, the RED-13 is a brief self-report measure that broadly captures the spectrum of RRE and may be a useful tool for identifying individuals at risk for overweight or obesity.

  8. Epidemiology of a Daphnia-multiparasite system and its implications for the red queen.

    Directory of Open Access Journals (Sweden)

    Stuart K J R Auld

    Full Text Available The Red Queen hypothesis can explain the maintenance of host and parasite diversity. However, the Red Queen requires genetic specificity for infection risk (i.e., that infection depends on the exact combination of host and parasite genotypes and strongly virulent effects of infection on host fitness. A European crustacean (Daphnia magna--bacterium (Pasteuria ramosa system typifies such specificity and high virulence. We studied the North American host Daphnia dentifera and its natural parasite Pasteuria ramosa, and also found strong genetic specificity for infection success and high virulence. These results suggest that Pasteuria could promote Red Queen dynamics with D. dentifera populations as well. However, the Red Queen might be undermined in this system by selection from a more common yeast parasite (Metschnikowia bicuspidata. Resistance to the yeast did not correlate with resistance to Pasteuria among host genotypes, suggesting that selection by Metschnikowia should proceed relatively independently of selection by Pasteuria.

  9. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

    KAUST Repository

    Lee, Onon; Wang, Yong; Yang, Jiangke; Lafi, Feras Fawzi; Al-Suwailem, Abdulaziz M.; Qian, Peiyuan

    2010-01-01

    Marine sponges are associated with a remarkable array of microorganisms. Using a tag pyrosequencing technology, this study was the first to investigate in depth the microbial communities associated with three Red Sea sponges, Hyrtios erectus

  10. Plasma actuators for bluff body flow control

    Science.gov (United States)

    Kozlov, Alexey V.

    The aerodynamic plasma actuators have shown to be efficient flow control devices in various applications. In this study the results of flow control experiments utilizing single dielectric barrier discharge plasma actuators to control flow separation and unsteady vortex shedding from a circular cylinder in cross-flow are reported. This work is motivated by the need to reduce landing gear noise for commercial transport aircraft via an effective streamlining created by the actuators. The experiments are performed at Re D = 20,000...164,000. Circular cylinders in cross-flow are chosen for study since they represent a generic flow geometry that is similar in all essential aspects to a landing gear oleo or strut. The minimization of the unsteady flow separation from the models and associated large-scale wake vorticity by using actuators reduces the radiated aerodynamic noise. Using either steady or unsteady actuation at ReD = 25,000, Karman shedding is totally eliminated, turbulence levels in the wake decrease significantly and near-field sound pressure levels are reduced by 13.3 dB. Unsteady actuation at an excitation frequency of St D = 1 is found to be most effective. The unsteady actuation also has the advantage that total suppression of shedding is achieved for a duty cycle of only 25%. However, since unsteady actuation is associated with an unsteady body force and produces a tone at the actuation frequency, steady actuation is more suitable for noise control applications. Two actuation strategies are used at ReD = 82,000: spanwise and streamwise oriented actuators. Near field microphone measurements in an anechoic wind tunnel and detailed study of the near wake using LDA are presented in the study. Both spanwise and streamwise actuators give nearly the same noise reduction level of 11.2 dB and 14.2 dB, respectively, and similar changes in the wake velocity profiles. The contribution of the actuator induced noise is found to be small compared to the natural shedding

  11. Genetic diversity of populations and clones of Rhopilema esculentum in China based on AFLP analysis

    Science.gov (United States)

    Qiao, Hongjin; Liu, Xiangquan; Zhang, Xijia; Jiang, Haibin; Wang, Jiying; Zhang, Limin

    2013-03-01

    Amplified fragment length polymorphisms (AFLP) markers were developed to assess the genetic variation of populations and clones of Rhopilema esculentum Kishinouye (Scyphozoa, Rhizostomatidae). One hundred and seventy-nine loci from 56 individuals of two hatchery populations and two wild populations were genotyped with five primer combinations. The polymorphic ratio, Shannon's diversity index and average heterozygosity were 70.3%, 0.346 and 0.228 for the white hatchery population, 74.3%, 0.313, and 0.201 for the red hatchery population, 79.3%, 0.349, and 0.224 for the Jiangsu wild population, and 74.9%, 0.328 and 0.210 for the Penglai wild population, respectively. Thus, all populations had a relatively high level of genetic diversity. A specific band was identified that could separate the white from the red hatchery population. There was 84.85% genetic differentiation within populations. Individual cluster analysis using unweighted pair-group method with arithmetic mean (UPGMA) suggested that hatchery populations and wild populations could be divided. For the hatchery populations, the white and red populations clustered separately; however, for the wild populations, Penglai and Jiangsu populations clustered together. The genetic diversity at the clone level was also determined. Our data suggest that there are relatively high genetic diversities within populations but low genetic differentiation between populations, which may be related to the long-term use of germplasm resources from Jiangsu Province for artificial seeding and releasing. These findings will benefit the artificial seeding and conservation of the germplasm resources.

  12. Exploring Archaeal Communities And Genomes Across Five Deep-Sea Brine Lakes Of The Red Sea With A Focus On Methanogens

    KAUST Repository

    Guan, Yue

    2015-12-15

    The deep-sea hypersaline lakes in the Red Sea are among the most challenging, extreme, and unusual environments on the planet Earth. Despite their harshness to life, they are inhabited by diverse and novel members of prokaryotes. Methanogenesis was proposed as one of the main metabolic pathways that drive microbial colonization in similar habitats. However, not much is known about the identities of the methane-producing microbes in the Red Sea, let alone the way in which they could adapt to such poly extreme environments. Combining a range of microbial community assessment, cultivation and omics (genomics, transcriptomics, and single amplified genomics) approaches, this dissertation seeks to fill these gaps in our knowledge by studying archaeal composition, particularly methanogens, their genomic capacities and transcriptomic characteristics in order to elucidate their diversity, function, and adaptation to the deep-sea brines of the Red Sea. Although typical methanogens are not abundant in the samples collected from brine pool habitats of the Red Sea, the pilot cultivation experiment has revealed novel halophilic methanogenic species of the domain Archaea. Their physiological traits as well as their genomic and transcriptomic features unveil an interesting genetic and functional adaptive capacity that allows them to thrive in the unique deep-sea hypersaline environments in the Red Sea.

  13. Patterns of MHC-DRB1 polymorphism in a post-glacial island canid, the Newfoundland red fox (Vulpes vulpes deletrix), suggest balancing selection at species and population timescales.

    Science.gov (United States)

    Marshall, H Dawn; Langille, Barbara L; Hann, Crystal A; Whitney, Hugh G

    2016-05-01

    As the only native insular Newfoundland canid between the extinction of the wolf in the 1930s and the recent arrival of coyotes, the red fox (Vulpes vulpes deletrix Bangs 1898) poses interesting questions about genetic distinctiveness and the post-glacial colonization history of the island's depauperate mammalian fauna. Here, we characterized genetic variability at the major histocompatibility complex (MHC) class II DR β1 domain (DRB1) locus in 28 red foxes from six sampling localities island-wide and compared it with mitochondrial control region (CR) diversity and DRB1 diversity in other canids. Our goals were to describe novel DRB1 alleles in a new canid population and to make inferences about the role of selection in maintaining their diversity. As in numerous studies of vertebrates, we found an order-of-magnitude higher nucleotide diversity at the DRB1 locus compared with the CR and significantly positive nonsynonymous-to-synonymous substitution ratios, indicative of selection in the distant past. Although the evidence is weaker, the Ewens-Watterson test of neutrality and the geographical distribution of variation compared with the CR suggest a role for selection over the evolutionary timescale of populations. We report the first genetic data from the DRB1 locus in the red fox and establish baseline information regarding immunogenetic variation in this island canid population which should inform continued investigations of population demography, adaptive genetic diversity, and wildlife disease in red foxes and related species.

  14. Under a crimson sun prospects for life in a red dwarf system

    CERN Document Server

    Stevenson, David S

    2013-01-01

    Gliese 581 is a red dwarf star some 20.3 light years from Earth. Red dwarfs are among the most numerous stars in the galaxy, and they sport diverse planetary systems. At magnitude 10, Gliese 581 is visible to amateur observers but does not stand out. So what makes this star so important? It is that professional observers have confirmed that it has at least four planets orbiting it, and in 2009, Planet d was described in the letters of The Astrophysical Journal as “the first confirmed exoplanet that could support Earth-like life.”   Under a Crimson Sun looks at the nature of red dwarf systems such as Gliese as potential homes for life.   Realistically, what are prospects for life on these distant worlds? Could life evolve and survive there? How do these planetary surfaces and geology evolve? How would life on a red dwarf planet differ from life on Earth? And what are the implications for finding further habitable worlds in our galaxy?   Stevenson provides readers with insight into the habitability of pl...

  15. Genetic diversity of the critically endangered Verbascum davidoffii Murb. (Scrophulariaceae and implications for conservation

    Directory of Open Access Journals (Sweden)

    Petrova, G.

    2016-12-01

    Full Text Available Verbascum davidoffii Murb. (Scrophulariaceae, one of the rarest plant species in Bulgarian flora, is a local endemic, protected by the National Biodiversity Act, included in the Red List of vascular plants, as well as in the Red Data Book of Bulgaria with conservation status “Critically Endangered”. Its distribution is limited due to anthropogenic pressure, specific ecological requirements and low reproductive capability. In this study, we aimed to measure the genetic diversity level in the unique single world population of Verbascum davidoffii located in Pirin National Park, Bulgaria. We found high genetic diversity in the excitant population of the species. The present study indicates that the primary objective in conservation of Verbascum davidoffii is to preserve as much as possible of its evolutionary potential

  16. Seeing red to being red: conserved genetic mechanism for red cone oil droplets and co-option for red coloration in birds and turtles.

    Science.gov (United States)

    Twyman, Hanlu; Valenzuela, Nicole; Literman, Robert; Andersson, Staffan; Mundy, Nicholas I

    2016-08-17

    Avian ketocarotenoid pigments occur in both the red retinal oil droplets that contribute to colour vision and bright red coloration used in signalling. Turtles are the only other tetrapods with red retinal oil droplets, and some also display red carotenoid-based coloration. Recently, the CYP2J19 gene was strongly implicated in ketocarotenoid synthesis in birds. Here, we investigate CYP2J19 evolution in relation to colour vision and red coloration in reptiles using genomic and expression data. We show that turtles, but not crocodiles or lepidosaurs, possess a CYP2J19 orthologue, which arose via gene duplication before turtles and archosaurs split, and which is strongly and specifically expressed in the ketocarotenoid-containing retina and red integument. We infer that CYP2J19 initially functioned in colour vision in archelosaurs and conclude that red ketocarotenoid-based coloration evolved independently in birds and turtles via gene regulatory changes of CYP2J19 Our results suggest that red oil droplets contributed to colour vision in dinosaurs and pterosaurs. © 2016 The Author(s).

  17. Divergence time estimates and the evolution of major lineages in the florideophyte red algae

    Science.gov (United States)

    Yang, Eun Chan; Boo, Sung Min; Bhattacharya, Debashish; Saunders, Gary W.; Knoll, Andrew H.; Fredericq, Suzanne; Graf, Louis; Yoon, Hwan Su

    2016-01-01

    The Florideophyceae is the most abundant and taxonomically diverse class of red algae (Rhodophyta). However, many aspects of the systematics and divergence times of the group remain unresolved. Using a seven-gene concatenated dataset (nuclear EF2, LSU and SSU rRNAs, mitochondrial cox1, and plastid rbcL, psaA and psbA genes), we generated a robust phylogeny of red algae to provide an evolutionary timeline for florideophyte diversification. Our relaxed molecular clock analysis suggests that the Florideophyceae diverged approximately 943 (817–1,049) million years ago (Ma). The major divergences in this class involved the emergence of Hildenbrandiophycidae [ca. 781 (681–879) Ma], Nemaliophycidae [ca. 661 (597–736) Ma], Corallinophycidae [ca. 579 (543–617) Ma], and the split of Ahnfeltiophycidae and Rhodymeniophycidae [ca. 508 (442–580) Ma]. Within these clades, extant diversity reflects largely Phanerozoic diversification. Divergences within Florideophyceae were accompanied by evolutionary changes in the carposporophyte stage, leading to a successful strategy for maximizing spore production from each fertilization event. Our research provides robust estimates for the divergence times of major lineages within the Florideophyceae. This timeline was used to interpret the emergence of key morphological innovations that characterize these multicellular red algae. PMID:26892537

  18. Sulfur bacteria in wastewater stabilization ponds periodically affected by the ‘red-water’ phenomenon

    NARCIS (Netherlands)

    Belila, A.; Abbas, B.; Fazaa, I.; Saidi, N.; Snoussi, M.; Hassen, A.; Muyzer, G.

    2012-01-01

    Several wastewater stabilization ponds (WSP) in Tunisia suffer periodically from the ‘red-water’ phenomenon due to blooming of purple sulfur bacteria, indicating that sulfur cycle is one of the main element cycles in these ponds. In this study, we investigated the microbial diversity of the El

  19. The Red Queen model of recombination hot-spot evolution: a theoretical investigation.

    Science.gov (United States)

    Latrille, Thibault; Duret, Laurent; Lartillot, Nicolas

    2017-12-19

    In humans and many other species, recombination events cluster in narrow and short-lived hot spots distributed across the genome, whose location is determined by the Zn-finger protein PRDM9. To explain these fast evolutionary dynamics, an intra-genomic Red Queen model has been proposed, based on the interplay between two antagonistic forces: biased gene conversion, mediated by double-strand breaks, resulting in hot-spot extinction, followed by positive selection favouring new PRDM9 alleles recognizing new sequence motifs. Thus far, however, this Red Queen model has not been formalized as a quantitative population-genetic model, fully accounting for the intricate interplay between biased gene conversion, mutation, selection, demography and genetic diversity at the PRDM9 locus. Here, we explore the population genetics of the Red Queen model of recombination. A Wright-Fisher simulator was implemented, allowing exploration of the behaviour of the model (mean equilibrium recombination rate, diversity at the PRDM9 locus or turnover rate) as a function of the parameters (effective population size, mutation and erosion rates). In a second step, analytical results based on self-consistent mean-field approximations were derived, reproducing the scaling relations observed in the simulations. Empirical fit of the model to current data from the mouse suggests both a high mutation rate at PRDM9 and strong biased gene conversion on its targets.This article is part of the themed issue 'Evolutionary causes and consequences of recombination rate variation in sexual organisms'. © 2017 The Authors.

  20. Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

    KAUST Repository

    DiBattista, Joseph; Coker, Darren James; Sinclair-Taylor, Tane; Stat, Michael; Berumen, Michael L.; Bunce, Michael

    2017-01-01

    Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

  1. Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

    Science.gov (United States)

    DiBattista, Joseph D.; Coker, Darren J.; Sinclair-Taylor, Tane H.; Stat, Michael; Berumen, Michael L.; Bunce, Michael

    2017-12-01

    Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

  2. Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

    KAUST Repository

    DiBattista, Joseph D.

    2017-08-23

    Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

  3. Characterization of bluff-body stabilized LPG jet diffusion flame with N{sub 2} dilution

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, P.; Mishra, D.P. [Combustion Lab, Department of Aerospace Engineering, Indian Institute of Technology, Kanpur, Uttar Pradesh 208 016 (India)

    2008-10-15

    Measurements of several parameters like flame length, soot free length fraction (SFLF), radiant fraction, gas temperature and emission levels are performed in coaxial LPG jet diffusion flame to provide an insight into the effect of lip thickness and inert addition on flame characteristics. The present measurements reveal that the visible flame length is found to be reduced with increase in lip thickness. In contrast, the flame length for all lip thicknesses gets enhanced by inert addition to the fuel stream, which can be attributed to the reduced diffusivity of the mixture gases. The SFLF is seen to be enhanced with N{sub 2} addition due to decrease in the fuel concentration and flame temperature. However, the SFLF is reduced with increasing lip thickness of the bluff-body which is caused due to the reduction in induction period of soot formation. For all lip thickness, the NO{sub x} emission level is observed to be attenuated with inert (N{sub 2}) addition, which can be ascribed to reduction in residence time of gas mixture. Besides this, NO{sub x} emission level is enhanced with increasing lip thickness. The emission index of CO is found to be increased with nitrogen addition; in contrast, the EICO{sub 2} is seen to be reduced, for all lip thickness. This can be attributed to attrition in residence time with inert addition that tends to inhibit the conversion of CO to CO{sub 2}. Moreover, EICO is also observed to be attenuated while EICO{sub 2} gets enhanced, with increasing lip thickness which might be due to the increased residence time of mixture gases. (author)

  4. Development of the Red Sea Biogeographic Information System

    KAUST Repository

    Machda, Fahmi

    2010-05-01

    Marine studies, surveys, and observational activities are continuously generating new and diverse data, which are hard to keep track of with tables and spreadsheets. Integrated data and information management systems that collect, analyze, and combine data are needed in order to provide a comprehensive picture of marine environments under study. For these reasons, we started to develop the Red Sea Biogeographic Information System (RBIS) at King Abdullah University of Science and Technology (KAUST) as a web application utilizing the most updated Web 2.0 technologies. RBIS is designed to have an easily accessible interface that is able to host and display research activities conducted in the Red Sea. Its data model is designed to deal with any kind of marine data. For its data structure, RBIS is organizing the data into three main categories: biological data, physicochemical data, and human activities. Spatial distribution of these data is visualized on a Google-Maps mashup. Dynamic charts are used to visualize the statistics of the data. With these functionalities, data model, and data structure, RBIS is able to organize, visualize, and do instantly combined analyses of research data from the Red Sea. The current version is accessible at http://www.kaust.edu.sa/rbis. © 2010 IEEE.

  5. Biogeography, Cultivation and Genomic Characterization of Prochlorococcus in the Red Sea

    KAUST Repository

    Shibl, Ahmed A.

    2015-12-16

    Aquatic primary productivity mainly depends on pelagic phytoplankton. The globally abundant marine picocyanobacteria Prochlorococcus comprises a significant fraction of the photosynthetic biomass in most tropical, oligotrophic oceans. The Red Sea is an enclosed narrow body of water characterized by continuous solar irradiance, and negligible annual rainfall, in addition to elevated temperatures and salinity levels, which mimics a global warming scenario. Analysis of 16S rRNA sequences of bacterioplankton communities indicated the predominance of a high-light adapted ecotype (HL II) of Prochlorococcus at the surface of the Northern and Central Red Sea. To this end, we analyzed the distribution of Prochlorococcus at multiple depths within and below the euphotic zone in different regions of the Red Sea, using clone libraries of the 16S–23S rRNA internal transcribed spacer (ITS) region. Results indicated a high diversity of Prochlorococcus ecotypes at the 100 m depth in the water column and an unusual dominance of HL II-related sequences in deeper waters of the Red Sea. To further investigate the microdiversity of Prochlorococcus over a wider biogeographical scope, we used a 454-pyrosequencing approach to analyze rpoC1 gene pyrotags. Samples were collected from the surface of the water column to up to 500 m at 45 stations that span the Red Sea’s main basin from 4 north to south. Phylogenetic analysis of abundant rpoC1 OTUs revealed genotypes of recently discovered strains that belong to the high-light and lowlight clades. In addition, we used a rapid community-profiling tool (GraftM) and quantitatively analyzed rpoC1 gene abundance from 45 metagenomes to assess the Prochlorococcus community structure across vertical and horizontal physicochemical gradients. Results revealed the clustering of samples according to their depth and a strong influence on ecotypic distribution by temperature and oxygen levels. In efforts to better understand how the cells survive the

  6. Tracing the fox family tree: the North American red fox has a diverse ancestry forged during successive ice ages

    Science.gov (United States)

    Gail Wells; Keith Aubry

    2011-01-01

    The red fox is one of the most widespread and adaptable mammals on Earth. In the American West, however, there are populations of native red foxes that occur only in alpine and subalpine habitats, which may be at risk from human-caused and natural pressures. One potential threat is global climate change, which is likely to reduce both the amount and connectivity of...

  7. Exploring the genetic diversity of shallow-water Agariciidae (Cnidaria: Anthozoa) from the Saudi Arabian Red Sea

    KAUST Repository

    Terraneo, Tullia Isotta; Arrigoni, Roberto; Benzoni, Francesca; Tietbohl, Matthew; Berumen, Michael L.

    2017-01-01

    Scleractinian corals ascribed to the family Agariciidae represent an important component of Red Sea coral reef fauna, though little genetic data are currently available for this group, and existing information shows polyphyly in the examined mesophotic taxa from the Pacific Ocean. In this work, we provide a first genetic survey of Agariciidae from the Saudi Arabian Red Sea, based on a collection of shallow-water material (<30 m) from the Gulf of Aqaba to the Farasan Islands. Two molecular markers were sequenced to infer morphospecies monophyly and relationships, the intergenic region between COI and 16S rRNA from mitochondrial DNA and the ribosomal ITS1 region from nuclear DNA. A total of 20 morphospecies were identified based on classical macromorphological characters. Six, namely Gardineroseris planulata, Pavona maldivensis, Pavona clavus, Pavona decussata, Leptoseris fragilis, and Leptoseris yabei, were resolved with both DNA loci. The molecular boundaries among the remaining 14 species remain unclear. Our results further confirm that the morphology-based taxonomy of most agariciid species is in disagreement with genetics. In order to disentangle the systematics of these taxa, the inclusion of more sampling locations, additional variable loci, and a micromophological approach are likely needed. Our genetic data represent a first step towards the comparison of biodiversity and connectivity between the Red Sea and the rest of the Indo-Pacific.

  8. Exploring the genetic diversity of shallow-water Agariciidae (Cnidaria: Anthozoa) from the Saudi Arabian Red Sea

    KAUST Repository

    Terraneo, Tullia Isotta

    2017-05-19

    Scleractinian corals ascribed to the family Agariciidae represent an important component of Red Sea coral reef fauna, though little genetic data are currently available for this group, and existing information shows polyphyly in the examined mesophotic taxa from the Pacific Ocean. In this work, we provide a first genetic survey of Agariciidae from the Saudi Arabian Red Sea, based on a collection of shallow-water material (<30 m) from the Gulf of Aqaba to the Farasan Islands. Two molecular markers were sequenced to infer morphospecies monophyly and relationships, the intergenic region between COI and 16S rRNA from mitochondrial DNA and the ribosomal ITS1 region from nuclear DNA. A total of 20 morphospecies were identified based on classical macromorphological characters. Six, namely Gardineroseris planulata, Pavona maldivensis, Pavona clavus, Pavona decussata, Leptoseris fragilis, and Leptoseris yabei, were resolved with both DNA loci. The molecular boundaries among the remaining 14 species remain unclear. Our results further confirm that the morphology-based taxonomy of most agariciid species is in disagreement with genetics. In order to disentangle the systematics of these taxa, the inclusion of more sampling locations, additional variable loci, and a micromophological approach are likely needed. Our genetic data represent a first step towards the comparison of biodiversity and connectivity between the Red Sea and the rest of the Indo-Pacific.

  9. Genetic differentiation in red-bellied piranha populations (Pygocentrus nattereri, Kner, 1858) from the Solimões-Amazonas River.

    Science.gov (United States)

    Dos Santos, Carlos Henrique Dos A; de Sá Leitão, Carolina S; Paula-Silva, Maria de N; Almeida-Val, Vera Maria F

    2016-06-01

    Red-bellied piranhas (Pygocentrus nattereri) are widely caught with different intensities throughout the region of Solimões-Amazonas River by local fishermen. Thus, the management of this resource is performed in the absence of any information on its genetic stock. P. nattereri is a voracious predator and widely distributed in the Neotropical region, and it is found in other regions of American continent. However, information about genetic variability and structure of wild populations of red-bellied piranha is unavailable. Here, we describe the levels of genetic diversity and genetic structure of red-bellied piranha populations collected at different locations of Solimões-Amazonas River system. We collected 234 red-bellied piranhas and analyzed throughout eight microsatellite markers. We identified high genetic diversity within populations, although the populations of lakes ANA, ARA, and MAR have shown some decrease in their genetic variability, indicating overfishing at these communities. Was identified the existence of two biological populations when the analysis was taken altogether at the lakes of Solimões-Amazonas River system, with significant genetic differentiation between them. The red-bellied piranha populations presented limited gene flow between two groups of populations, which were explained by geographical distance between these lakes. However, high level of gene flow was observed between the lakes within of the biological populations. We have identified high divergence between the Catalão subpopulation and all other subpopulations. We suggest the creation of sustainable reserve for lakes near the city of Manaus to better manage and protect this species, whose populations suffer from both extractive and sport fishing.

  10. Remote sensing the phytoplankton seasonal succession of the Red Sea.

    Science.gov (United States)

    Raitsos, Dionysios E; Pradhan, Yaswant; Brewin, Robert J W; Stenchikov, Georgiy; Hoteit, Ibrahim

    2013-01-01

    The Red Sea holds one of the most diverse marine ecosystems, primarily due to coral reefs. However, knowledge on large-scale phytoplankton dynamics is limited. Analysis of a 10-year high resolution Chlorophyll-a (Chl-a) dataset, along with remotely-sensed sea surface temperature and wind, provided a detailed description of the spatiotemporal seasonal succession of phytoplankton biomass in the Red Sea. Based on MODIS (Moderate-resolution Imaging Spectroradiometer) data, four distinct Red Sea provinces and seasons are suggested, covering the major patterns of surface phytoplankton production. The Red Sea Chl-a depicts a distinct seasonality with maximum concentrations seen during the winter time (attributed to vertical mixing in the north and wind-induced horizontal intrusion of nutrient-rich water in the south), and minimum concentrations during the summer (associated with strong seasonal stratification). The initiation of the seasonal succession occurs in autumn and lasts until early spring. However, weekly Chl-a seasonal succession data revealed that during the month of June, consistent anti-cyclonic eddies transfer nutrients and/or Chl-a to the open waters of the central Red Sea. This phenomenon occurs during the stratified nutrient depleted season, and thus could provide an important source of nutrients to the open waters. Remotely-sensed synoptic observations highlight that Chl-a does not increase regularly from north to south as previously thought. The Northern part of the Central Red Sea province appears to be the most oligotrophic area (opposed to southern and northern domains). This is likely due to the absence of strong mixing, which is apparent at the northern end of the Red Sea, and low nutrient intrusion in comparison with the southern end. Although the Red Sea is considered an oligotrophic sea, sporadic blooms occur that reach mesotrophic levels. The water temperature and the prevailing winds control the nutrient concentrations within the euphotic zone

  11. Remote Sensing the Phytoplankton Seasonal Succession of the Red Sea

    KAUST Repository

    Raitsos, Dionysios E.

    2013-06-05

    The Red Sea holds one of the most diverse marine ecosystems, primarily due to coral reefs. However, knowledge on large-scale phytoplankton dynamics is limited. Analysis of a 10-year high resolution Chlorophyll-a (Chl-a) dataset, along with remotely-sensed sea surface temperature and wind, provided a detailed description of the spatiotemporal seasonal succession of phytoplankton biomass in the Red Sea. Based on MODIS (Moderate-resolution Imaging Spectroradiometer) data, four distinct Red Sea provinces and seasons are suggested, covering the major patterns of surface phytoplankton production. The Red Sea Chl-a depicts a distinct seasonality with maximum concentrations seen during the winter time (attributed to vertical mixing in the north and wind-induced horizontal intrusion of nutrient-rich water in the south), and minimum concentrations during the summer (associated with strong seasonal stratification). The initiation of the seasonal succession occurs in autumn and lasts until early spring. However, weekly Chl-a seasonal succession data revealed that during the month of June, consistent anti-cyclonic eddies transfer nutrients and/or Chl-a to the open waters of the central Red Sea. This phenomenon occurs during the stratified nutrient depleted season, and thus could provide an important source of nutrients to the open waters. Remotely-sensed synoptic observations highlight that Chl-a does not increase regularly from north to south as previously thought. The Northern part of the Central Red Sea province appears to be the most oligotrophic area (opposed to southern and northern domains). This is likely due to the absence of strong mixing, which is apparent at the northern end of the Red Sea, and low nutrient intrusion in comparison with the southern end. Although the Red Sea is considered an oligotrophic sea, sporadic blooms occur that reach mesotrophic levels. The water temperature and the prevailing winds control the nutrient concentrations within the euphotic zone

  12. Phylogenetic profile of gut microbiota in healthy adults after moderate intake of red wine.

    Science.gov (United States)

    Barroso, Elvira; Muñoz-González, Irene; Jiménez, Esther; Bartolomé, Begoña; Moreno-Arribas, M Victoria; Peláez, Carmen; Del Carmen Martínez-Cuesta, María; Requena, Teresa

    2017-03-01

    There is growing interest in understanding how human colonic microbiota can be modified by dietary habits. We examined the influence of moderate red wine intake on the colonic microbiota of 15 healthy volunteers, related to the high concentration of polyphenols present in this beverage. The volunteers were classified into high, moderate, and low polyphenol metabolizers (metabotypes) due to their ability to metabolize polyphenols and the results were compared with that of five control (no wine intake) subjects. We analyzed the composition, diversity, and dynamics of their fecal microbiota before and after 1 month of wine consumption. The 16S rDNA sequencing allowed detection of 2324 phylotypes, of which only 30 were found over the 0.5% of mean relative frequency, representing 84.6% of the total taxonomical assignments. The samples clustered more strongly by individuals than by wine intake or metabotypes, however an increase in diversity, after the wine intake, was observed. The results of this study suggest an increase in the global fecal microbial diversity associated to the consumption of red wine, confirm the high variability of the microbiota from different individuals, and show the stability of their singular microbiota composition to small and short-term dietary changes. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Inquiring into Red/Red Inquiring

    Directory of Open Access Journals (Sweden)

    Ken Gale

    2013-05-01

    Full Text Available This layered account of an inquiry into ‘red’ emerged out of a collective biography workshop. In the middle of the Wiltshire countryside, an international and interdisciplinary group of scholars gathered together to write and make other things and marks on paper that asked questions of, and into, the spaces between words, people, things and their environments. We did not set out to workshop or write into or paint ‘red’ but, rather, it was red that slipped in, uninvited, and painted and wrote us. Red arose as a blush or a stain seeping amongst us that became referenced obliquely by material objects, metaphors and fairytales. The stain spread, became noticeable through our weekend together and beyond it, creating another (bright red artery vein of connection to write with.

  14. High Concentration of Red Clay as an Alternative for Antibiotics in Aquaculture.

    Science.gov (United States)

    Jung, Jaejoon; Jee, Seung Cheol; Sung, Jung-Suk; Park, Woojun

    2016-01-01

    The use of antibiotics in aquaculture raises environmental and food safety concerns because chronic exposure of an aquatic ecosystem to antibiotics can result in the spread of antibiotic resistance, bioaccumulation of antibiotics in the organisms, and transfer of antibiotics to humans. In an attempt to overcome these problems, high-concentration red clay was applied as an alternative antibiotic against the following common fish pathogens: Aeromonas salmonicida, Vibrio alginolyticus, and Streptococcus equinus. The growth of A. salmonicida and V. alginolyticus was retarded by red clay, whereas that of S. equinus was promoted. Phase contrast and scanning electron microscopy analyses confirmed the attachment of red clay on cell surfaces, resulting in rapid gravitational removal and cell surface damage in both A. salmonicida and V. alginolyticus, but not in S. equinus. Different cell wall properties of grampositive species may explain the unharmed cell surface of S. equinus. Significant levels of oxidative stress were generated in only the former two species, whereas significant changes in membrane permeability were found only in S. equinus, probably because of its physiological adaptation. The bacterial communities in water samples from Oncorhynchus mykiss aquacultures supplemented with red clay showed similar structure and diversity as those from oxytetracycline-treated water. Taken together, the antibiotic effects of high concentrations of red clay in aquaculture can be attributed to gravitational removal, cell surface damage, and oxidative stress production, and suggest that red clay may be used as an alternative for antibiotics in aquaculture.

  15. 7X performance results - final report : ASCI Red vs Red Storm.

    Energy Technology Data Exchange (ETDEWEB)

    Dinge, Dennis C. (Cray Inc., Albuquerque, NM); Davis, Michael E. (Cray Inc., Albuquerque, NM); Haskell, Karen H.; Ballance, Robert A.; Gardiner, Thomas Anthony; Stevenson, Joel O.; Noe, John P.

    2011-04-01

    The goal of the 7X performance testing was to assure Sandia National Laboratories, Cray Inc., and the Department of Energy that Red Storm would achieve its performance requirements which were defined as a comparison between ASCI Red and Red Storm. Our approach was to identify one or more problems for each application in the 7X suite, run those problems at multiple processor sizes in the capability computing range, and compare the results between ASCI Red and Red Storm. The first part of this report describes the two computer systems, the applications in the 7X suite, the test problems, and the results of the performance tests on ASCI Red and Red Storm. During the course of the testing on Red Storm, we had the opportunity to run the test problems in both single-core mode and dual-core mode and the second part of this report describes those results. Finally, we reflect on lessons learned in undertaking a major head-to-head benchmark comparison.

  16. FIN5 positively regulates far-red light responses in Arabidopsis thaliana

    International Nuclear Information System (INIS)

    Cho, D.S.; Hong, S.H.; Nam, H.G.; Soh, M.S.

    2003-01-01

    We report the characterization of a semi-dominant mutation fin5-1 (far-red insensitive 5-1) of Arabidopsis, which was isolated from genetic screening of phytochrome A (phyA) signaling components. Plants with the fin5-1 mutation exhibited a long hypocotyl phenotype when grown under far-red (FR) light, but not under red light. Physiological analyses implied that FIN5 might be differentially involved in diverse responses that are regulated by phyA under continuous FR light. Anthocyanin accumulation, gravitropic response of hypocotyl growth, and FR light-preconditioned blocking of greening were also impaired in the fin5-1 mutant, whereas photoperiodic floral induction was not, if at all, significantly affected. Moreover, light-regulated expression of the CHS, PORA and PsbS genes was attenuated in fin5-1 mutant plants, while the light-induced expression of CAB was normal. The mutation exhibited semi-dominance regarding control of hypocotyl growth in FR light. We suggest that FIN5 defines a novel branch in the network of phyA signaling in Arabidopsis. (author)

  17. Yellow and the Novel Aposematic Signal, Red, Protect Delias Butterflies from Predators.

    Directory of Open Access Journals (Sweden)

    Jocelyn Liang Qi Wee

    Full Text Available Butterflies of the South Asian and Australian genus Delias possess striking colours on the ventral wings that are presumed to serve as warning signals to predators. However, this has not been shown empirically. Here we experimentally tested whether the colours of one member of this diverse genus, Delias hyparete, function as aposematic signals. We constructed artificial paper models with either a faithful colour representation of D. hyparete, or with all of its colours converted to grey scale. We also produced models where single colours were left intact, while others were converted to grey-scale or removed entirely. We placed all model types simultaneously in the field, attached to a live mealworm, and measured relative attack rates at three separate field sites. Faithful models of D. hyparete, suffered the least amount of attacks, followed by grey-scale models with unaltered red patches, and by grey-scale models with unaltered yellow patches. We conclude that red and yellow colours function as warning signals. By mapping dorsal and ventral colouration onto a phylogeny of Delias, we observed that yellow and red colours appear almost exclusively on the ventral wing surfaces, and that basal lineages have mostly yellow, white, and black wings, whereas derived lineages contain red colour in addition to the other colours. Red appears to be, thus, a novel adaptive trait in this lineage of butterflies.

  18. Yellow and the Novel Aposematic Signal, Red, Protect Delias Butterflies from Predators.

    Science.gov (United States)

    Wee, Jocelyn Liang Qi; Monteiro, Antónia

    2017-01-01

    Butterflies of the South Asian and Australian genus Delias possess striking colours on the ventral wings that are presumed to serve as warning signals to predators. However, this has not been shown empirically. Here we experimentally tested whether the colours of one member of this diverse genus, Delias hyparete, function as aposematic signals. We constructed artificial paper models with either a faithful colour representation of D. hyparete, or with all of its colours converted to grey scale. We also produced models where single colours were left intact, while others were converted to grey-scale or removed entirely. We placed all model types simultaneously in the field, attached to a live mealworm, and measured relative attack rates at three separate field sites. Faithful models of D. hyparete, suffered the least amount of attacks, followed by grey-scale models with unaltered red patches, and by grey-scale models with unaltered yellow patches. We conclude that red and yellow colours function as warning signals. By mapping dorsal and ventral colouration onto a phylogeny of Delias, we observed that yellow and red colours appear almost exclusively on the ventral wing surfaces, and that basal lineages have mostly yellow, white, and black wings, whereas derived lineages contain red colour in addition to the other colours. Red appears to be, thus, a novel adaptive trait in this lineage of butterflies.

  19. Red imported fire ant impacts on upland arthropods in Southern Mississippi

    Science.gov (United States)

    Epperson, D.M.; Allen, Craig R.

    2010-01-01

    Red imported fire ants (Solenopsis invicta) have negative impacts on a broad array of invertebrate species. We investigated the impacts of fire ants on the upland arthropod community on 20???40 ha study sites in southern Mississippi. Study sites were sampled from 19972000 before, during, and after fire ant bait treatments to reduce fire ant populations. Fire ant abundance was assessed with bait transects on all sites, and fire ant population indices were estimated on a subset of study sites. Species richness and diversity of other ant species was also assessed from bait transects. Insect biomass and diversity was determined from light trap samples. Following treatments, fire ant abundance and population indices were significantly reduced, and ant species diversity and richness were greater on treated sites. Arthropod biomass, species diversity and species richness estimated from light trap samples were negatively correlated with fire ant abundance, but there were no observable treatment effects. Solenopsis invicta has the potential to negatively impact native arthropod communities resulting in a potential loss of both species and function.

  20. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea

    KAUST Repository

    Pearman, John K.; Irigoien, Xabier; Carvalho, Susana

    2015-01-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based

  1. Isolation and characterization of Babesia pecorum sp. nov. from farmed red deer (Cervus elaphus).

    Science.gov (United States)

    Jouglin, Maggy; Fernández-de-Mera, Isabel G; de la Cotte, Nathalie; Ruiz-Fons, Francisco; Gortázar, Christian; Moreau, Emmanuelle; Bastian, Suzanne; de la Fuente, José; Malandrin, Laurence

    2014-08-26

    The diversity of Babesia species infecting cervids in parts of central and southern Spain was analyzed by collecting blood from farmed red deer (Cervus elaphus). Babesia sp. was isolated in vitro from two red deer herds in Cádiz and Ciudad Real. The number of Babesia sp. carriers differed between the two herds: 36/77 in Cádiz and 1/35 in Ciudad Real. Hyalomma lusitanicum was the most prevalent tick species identified on the Cádiz farm vegetation and on sampled animals, and is therefore a candidate vector. The molecular characteristics of 21 isolates were determined by complete (8 isolates) or partial (13 isolates) 18S rRNA gene sequencing. The sequences were highly similar (over 99.4% identity) and 6 sequence types were identified at the level of one herd only, demonstrating a rather high genetic diversity. They formed a monophyletic clade, and members of the three main sequence types shared a similar morphology and the same erythrocyte susceptibility pattern. This clade also included Babesia sp. Xinjiang isolated from sheep in China and Babesia sp. identified in giraffe in South Africa, with identities higher than 98.3% and statistically relevant phylogenetic support. None of the biological properties analyzed for both Babesia from red deer and Babesia sp. Xinjiang allowed their differentiation (ability to develop in vitro in erythrocytes from cattle and sheep, as well as in erythrocytes from different cervids, unsuccessful infection of calves). We propose the Babesia isolated from red deer as a new species named B. pecorum. Whether Babesia sp. Xinjiang and the Babesia characterized in South Africa belong to the same species is debated.

  2. Separation, Identification, and Bioactivities of the Main Gallotannins of Red Sword Bean (Canavalia gladiata) Coats

    Science.gov (United States)

    Gan, Ren-You; Kong, Kin-Weng; Li, Hua-Bin; Wu, Kao; Ge, Ying-Ying; Chan, Chak-Lun; Shi, Xian-Ming; Corke, Harold

    2018-02-01

    The red sword bean (Canavalia gladiata) is an underutilized edible bean cultivated in China. It was previously found to have the highest content of antioxidant polyphenols among 42 edible beans, mainly gallic acid and gallotannins in its red bean coat, an apparently unique characteristic among edible beans. In this study, the main phenolic compounds in red sword bean coats were further separated by Sephadex LH-20 column chromatography, and identified by LC-MS/MS. Furthermore, the FRAP and ABTS antioxidant activities and antibacterial activity (diameter of inhibition zone, DIZ) of main gallotannin-rich fractions were tested. Our results showed that gallotannins of red sword bean coats were mainly comprised of nonogalloyl to hexagalloyl hexosides. Interestingly, tetragalloyl, pentagalloyl, and hexagalloyl hexosides were identified as the main candidates responsible for the red color of the coats. On the other hand, gallotannin-rich fractions exhibited diverse antioxidant and antibacterial activities, and tetragalloyl hexoside overall had the highest free radical scavenging and antibacterial activities. The degree of galloylation did not completely explain the structure-function relationship of gallotannins isolated from red sword bean coats, as there should exist other factors affecting their bioactivities. In conclusion, red sword bean coats are excellent natural sources of gallotannins, and their gallotannin-rich extracts can be utilized as natural antioxidant and antibacterial agents with potential health benefits as well as application in food industry.

  3. Effects of rear cavities on the wake behind an accelerating D-shaped bluff body

    Science.gov (United States)

    Lorite-Díez, M.; Jiménez-González, J. I.; Gutiérrez-Montes, C.; Martínez-Bazán, C.

    2018-04-01

    We investigate experimentally and numerically the transient development of the wake induced by a constant acceleration of a D-shaped bluff body, starting from rest and reaching a permanent regime of Reynolds number Re = 2000, under different values of acceleration and implementing three distinct rear geometrical configurations. Thus, alongside the classical blunt base, two control passive devices, namely, a straight cavity and an optimized, curved cavity, recently designed using adjoint optimization techniques, have also been used to assess their performance in transient flow conditions. Particle image velocimetry measurements were performed in a towing tank to characterize the near wake development in the early transient stages. It has been observed that the flow first develops symmetric shear layers with primary eddies attracted toward the base of the body due to the flow suction generated by the accelerated motion. Eventually, the interaction between the upper and lower shear layers provokes the destabilization of the flow and the symmetry breaking of the wake, finally giving rise to an alternate transitional vortex shedding regime. The transition between these phases is sped-up when the optimized cavity is used, reaching earlier the permanent flow conditions. In particular, the use of the optimized geometry has been shown to limit the growth of the primary eddies, decreasing both the recirculation and vortex formation length and providing with a more regularized, more organized vortex shedding. In addition, numerical simulations have been performed to evaluate the distribution of forces induced by the addition of rear cavities. In general, the aforementioned smoother and faster transition related to the use of optimized cavity translates into a lower averaged value of the drag coefficient, together with less energetic force fluctuations, regardless of the acceleration value.

  4. Hyperspectral analysis of cultural heritage artifacts: pigment material diversity in the Gough Map of Britain

    Science.gov (United States)

    Bai, Di; Messinger, David W.; Howell, David

    2017-08-01

    The Gough Map, one of the earliest surviving maps of Britain, was created and extensively revised over the 15th century. In 2015, the map was imaged using a hyperspectral imaging system while in the collection at the Bodleian Library, Oxford University. The goal of the collection of the hyperspectral image (HSI) of the Gough Map was to address questions such as enhancement of faded text for reading and analysis of the pigments used during its creation and revision. In particular, pigment analysis of the Gough Map will help historians understand the material diversity of its composition and potentially the timeline of, and methods used in, the creation and revision of the map. Multiple analysis methods are presented to analyze a particular pigment in the Gough Map with an emphasis on understanding the within-material diversity, i.e., the number and spatial layout of distinct red pigments. One approach for understanding the number of distinct materials in a scene (i.e., endmember selection and dimensionality estimation) is the Gram matrix approach. Here, this method is used to study the within-material differences of pigments in the map with common visual color. The application is a pigment analysis tool that extracts visually common pixels (here, the red pigments) from the Gough Map and estimates the material diversity of the pixels. Results show that the Gough Map is composed of at least five kinds of dominant red pigments with a particular spatial pattern. This research provides a useful tool for historical geographers and cartographic historians to analyze the material diversity of HSI of cultural heritage artifacts.

  5. Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments

    KAUST Repository

    Thompson, Luke R; Field, Chris; Romanuk, Tamara; Ngugi, David; Siam, Rania; El Dorry, Hamza; Stingl, Ulrich

    2013-01-01

    , temperatures, and light levels at the extreme end for the surface ocean, and low nutrient concentrations, yet no metagenomic studies have been done there. The Red Sea (high salinity, high light, low N and P) compares favorably with the Mediterranean Sea (high

  6. Regeneration of upper-elevation red oak in the White Mountains of New Hampshire

    Science.gov (United States)

    William B. Leak; Mariko. Yamasaki

    2013-01-01

    Northern red oak occurs in limited amounts with a mixture of softwoods on the shallow soils at upper elevations in northern New England. These stands are important for wildlife habitat and forest diversity as well as a modest amount of timber harvesting. Little experience or research is available on how to regenerate upper-elevation oak. However, an examination of a 35...

  7. Red Alder-Conifer Stands in Alaska: An Example of Mixed Species Management to Enhance Structural and Biological Complexity

    Directory of Open Access Journals (Sweden)

    Robert L. Deal

    2017-04-01

    Full Text Available There is worldwide interest in managing forests to improve biodiversity, enhance ecosystem services and assure long-term sustainability of forest resources. An increasingly important goal of forest management is to increase stand diversity and improve wildlife and aquatic habitat. Well-planned silvicultural systems containing a mixture of broadleaf-conifer species have potential to enhance stand diversity and provide other ecosystem services earlier than typical even-aged conifer plantations. Here, we use the example of mixed Sitka spruce/western hemlock and red alder in young, managed stands in southeast Alaska to achieve these goals. We briefly describe the silvics of Sitka spruce, western hemlock and red alder plantations as pure conifer stands or pure broadleaf stands. Then, we synthesize studies of mixed red alder-Sitka spruce/western hemlock stands in southeast Alaska and present their potential for improving stand structural complexity, biodiversity and other ecosystem services over pure conifer forests. Finally, we discuss some of the opportunities and potential tradeoffs for managing mixed broadleaf-conifer stands for providing a number of natural resources and the influence of these broadleaf-conifer forests on ecosystem linkages and processes.

  8. Adsorption of procion red and congo red dyes using microalgae Spirulina sp

    Directory of Open Access Journals (Sweden)

    Risfidian Mohadi

    2017-10-01

    Full Text Available Adsorption of procion red and congo red dyes using microalgae Spirulina sp was conducted. Spirulina sp was obtained by cultivation and production in laboratory scale. Spirulina sp was used as adsorbent for adsorption of dyes. Adsorption process was studied by kinetic and thermodynamic in order to know the adsorption phenomena. The results showed that kinetically congo red is reactive than procion red on Spirulina sp. On the other hand, thermodynamically procion red was stable than congo red on Spirulina sp which was indicated by adsorption capacity, enthalpy, and entropy.

  9. Neglected intravascular pathogens, Babesia vulpes and haemotropic Mycoplasma spp. in European red fox (Vulpes vulpes) population.

    Science.gov (United States)

    Koneval, Martina; Miterpáková, Martina; Hurníková, Zuzana; Blaňarová, Lucia; Víchová, Bronislava

    2017-08-30

    Wild animals, especially canids, are important reservoirs of vector-borne pathogens, that are transmitted by the ticks and other bloodsucking arthropods. In total, 300 red foxes (Vulpes vulpes), shot by the hunters in eastern and northern Slovakia, were screened for the presence of vector-borne pathogens by PCR-based methods Blood samples were obtained from nine red foxes and tissue samples originated from 291 animals (the liver tissue samples from 49 foxes and spleen samples from 242 red foxes). Babesia vulpes and haemotropic Mycoplasma species were identified by amplification and sequencing of 18S rRNA and 16S rRNA gene fragments, respectively. Overall, the presence of these pathogens was recorded in 12.3% of screened DNA samples. Altogether 9.7% (29/300) of investigated foxes carried DNA of Babesia spp. In total, 12 out of 29 Babesia spp. PCR - positive amplicons were further sequenced and identified as B. vulpes (41.4%; 12/29), remaining 17 samples are referred as Babesia sp. (58.6%; 17/29). Overall prevalence of B. vulpes reached 4.0% (n=300). Thirteen (4.3%) samples tested positive for distinct Mycoplasma species. To the best of our knowledge, this study brings the first information on B. vulpes infection in red foxes in Slovakia, and the first data on the prevalence and diversity of haemotropic Mycoplasma spp. in European red fox population. Moreover, co-infections with B. vulpes and Mycoplasma spp. were confirmed in 1.7% of tested DNA samples. The relatively high rates of blood pathogen' prevalence and species diversity in wild foxes indicate the role of the fox population in the maintenance of the parasites in sylvatic cycles and strengthen the assumption that foxes play an important role in spreading of infectious microorganisms within and outside the natural foci. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Metabolomic Profiling of the White, Violet, and Red Flowers of Rhododendron schlippenbachii Maxim.

    Science.gov (United States)

    Park, Chang Ha; Yeo, Hyeon Ji; Kim, Nam Su; Park, Ye Eun; Park, Soo-Yun; Kim, Jae Kwang; Park, Sang Un

    2018-04-04

    Rhododendron schlippenbachii Maxim. is a garden plant that is also used for natural medicines as a consequence of the biological activities of its diverse metabolites. We accordingly profiled two anthocyanins and 40 primary and secondary metabolites in the three different colored flowers. The major anthocyanins found in the flowers were cyanidins. The red flowers exhibited the highest accumulation of anthocyanins (1.02 ± 0.02 mg/g dry weight). Principal component analysis was applied to the GC‒TOFMS data. The levels of key tricarboxylic acid cycle intermediates in red flowers, such as succinic acid, fumaric acid, and malic acid, were found to be highly significantly different ( p < 0.0001) from those in the flowers of other colors. In this study, we aimed to determine metabolite interactions and phenotypic variation among white, violet, and red flowers of R. schlippenbachii by using gas chromatography time-of-flight mass spectrometry (GC‒TOFMS) and high-performance liquid chromatography (HPLC).

  11. Romantic red: red enhances men's attraction to women.

    Science.gov (United States)

    Elliot, Andrew J; Niesta, Daniela

    2008-11-01

    In many nonhuman primates, the color red enhances males' attraction to females. In 5 experiments, the authors demonstrate a parallel effect in humans: Red, relative to other achromatic and chromatic colors, leads men to view women as more attractive and more sexually desirable. Men seem unaware of this red effect, and red does not influence women's perceptions of the attractiveness of other women, nor men's perceptions of women's overall likeability, kindness, or intelligence. The findings have clear practical implications for men and women in the mating game and, perhaps, for fashion consultants, product designers, and marketers. Furthermore, the findings document the value of extending research on signal coloration to humans and of considering color as something of a common language, both within and across species. (c) 2008 APA, all rights reserved.

  12. A compiled checklist of seaweeds of Sudanese Red Sea coast

    Directory of Open Access Journals (Sweden)

    Nahid Abdel Rahim Osman

    2016-02-01

    Full Text Available Objective: To present an updated and compiled checklist of Sudanese seaweeds as an example for the region for conservational as well as developmental purposes. Methods: The checklist was developed based on both field investigations using line transect method at 4 sites along the Red Sea coast of Sudan and review of available studies done on Sudanese seaweeds. Results: In total 114 macroalgal names were recorded and were found to be distributed in 16 orders, 34 families, and 62 genera. The Rhodophyceae macroalgae contained 8 orders, 17 families, 32 genera and 47 species. The Phaeophyceae macroalgae composed of 4 orders, 5 families, 17 genera, and 28 species. The 39 species of the Chlorophyceae macroalgae belong to 2 classes, 4 orders, 12 families, and 14 genera. The present paper proposed the addition of 11 macroalgal taxa to be included in Sudan seaweeds species list. These include 3 red seaweed species, 1 brown seaweed species and 7 green seaweed species. Conclusions: This list is not yet inclusive and it only represents the macroalgal species common to the intertidal areas of Sudan Red Sea coast. Further investigation may reveal the presence of more species. While significant levels of diversity and endemism were revealed for other groups of organisms in the Red Sea region, similar work still has to be performed for seaweeds. Considering the impact of climate change on communities’ structure and composition and the growing risk of maritime transportation through the Red Sea particularly that may originate from oil tankers as well as that may emanate from oil exploration, baseline data on seaweeds are highly required for management purposes.

  13. DAMPAK INVASIF IKAN RED DEVIL (Amphilophus citrinellus TERHADAP KEANEKARAGAMAN IKAN DI PERAIRAN UMUM DARATAN DI INDONESIA

    Directory of Open Access Journals (Sweden)

    Chairulwan Umar

    2015-05-01

    Full Text Available Keanekaragaman ikan air tawar di Indonesia sekarang menghadapi ancaman dari berbagai aktivitas manusia yang bisa menyebabkan punahnya ikan-ikan endemik, dan diperkirakan sekitar 87 jenis ikan Indonesia terancam punah. Beberapa faktor yang menjadi ancaman terhadap keanekaragaman ikan dan menimbulkan kepunahan diantaranya introduksi spesies. Perkembangan beberapa spesies ikan menjadi tak terkendali sehingga menjadi hama dan merugikan manusia. Salah satu di antaranya adalah masuknya ikan ‘Red Devil’ ke beberapa perairan umum daratan di Indonesia. Beberapa perairan yang terdapat ikan red devil, mengalami penurunan sumber daya ikan baik jenis maupun jumlah, bahkan beberapa jenis ikan asli banyak yang hilang. Makalah ini bertujuan untuk mengkaji dampak keberadaan ikan ini terhadap keanekaragaman sumberdaya ikan di perairan. Kajian ini bersifat desk study dan pengamatan langsung di lapangan. Verifikasi lapang dilakukan pada tahun 2011 dan 2012. Hasil tangkapan ikan red devil di beberapa perairan waduk dan danau di Indonesia sangat dominan bisa mencapai 40 – 60 %. Dampak dari invasi ikan ini antara lain adalah terjadinya perubahan ekosistem, yaitu penurunan keanekaragaman hayati, dan dampak terhadap kerugian ekonomi seperti biaya untuk mengendalikan jenis ikan asing dan penurunan produksi ikan ekonomis.   Freshwater fish diversity in Indonesia is now facing threats from human activities that could lead to the extinction of endemic fish, and an estimated 87 Indonesian fish species threatened with extinction. Some factors that caused a threat to the diversity and extinction of fish is the introduction of new species. The development of some species of fish become uncontrollable and those being predators and caused a damage for humans life. One of them is the inclusion of Red devil fish to some inland waters in Indonesia. Some inland water that contains of red devil fish caused declining of fish resources in type or amount and

  14. Admixture of Eastern and Western European Red Deer Lineages as a Result of Postglacial Recolonization of the Czech Republic (Central Europe).

    Science.gov (United States)

    Krojerová-Prokešová, Jarmila; Barančeková, Miroslava; Koubek, Petr

    2015-01-01

    Due to a restriction of the distributional range of European red deer (Cervus elaphus L.) during the Quaternary and subsequent recolonization of Europe from different refugia, a clear phylogeographical pattern in genetic structure has been revealed using mitochondrial DNA markers. In Central Europe, 2 distinct, eastern and western, lineages of European red deer are present; however, admixture between them has not yet been studied in detail. We used mitochondrial DNA (control region and cytochrome b gene) sequences and 22 microsatellite loci from 522 individuals to investigate the genetic diversity of red deer in what might be expected to be an intermediate zone. We discovered a high number of unique mtDNA haplotypes belonging to each lineage and high levels of genetic diversity (cyt b H = 0.867, D-loop H = 0.914). The same structuring of red deer populations was also revealed by microsatellite analysis, with results from both analyses thus suggesting a suture zone between the 2 lineages. Despite the fact that postglacial recolonization of Central Europe by red deer occurred more than 10000 years ago, the degree of admixture between the 2 lineages is relatively small, with only 10.8% admixed individuals detected. Direct translocations of animals by humans have slightly blurred the pattern in this region; however, this blurring was more apparent when using maternally inherited markers than nuclear markers. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Spatial distribution of fifty ornamental fish species on coral reefs in the Red Sea and Gulf of Aden.

    Science.gov (United States)

    Khalaf, Maroof A; Abdallah, Mohamed

    2014-01-01

    The spatial distribution of 50 ornamental fish species from shallow water habitats on coral reefs were investigated using visual census techniques, between latitudes 11-29°N in the Red Sea, in Jordan, Egypt, Saudi Arabia, and Yemen, and in the adjacent Gulf of Aden in Djibouti. One hundred eighteen transects (each 100×5 m) were examined in 29 sites (3-8 sites per country). A total of 522,523 fish individuals were counted during this survey, with mean abundance of 4428.2 ± 87.26 individual per 500 m² transect. In terms of relative abundance (RA), the most abundant species were Blue green damselfish, Chromis viridis (RA=54.4%),followed bySea goldie, Pseudanthias squamipinnis (RA= 34.7), Whitetail dascyllus, Dascyllus aruanus (RA= 2.6%), Marginate dascyllus, Dascyllus marginatus (RA= 2.0),Red Sea eightline flasher Paracheilinus octotaenia (RA=1.0),andKlunzinger's wrasse, Thalassoma rueppellii (0.7%). The highest number of species (S) per 500 m² transect was found on reefs at the latitude 20° in Saudi Arabia (S=21.8), and the lowest number of species was found at the latitude 15° in Djibouti (S=11.11). The highest mean abundance (8565.8) was found on reefs at latitude 20° in Saudi Arabia and the lowest mean abundance (230) was found on reefs at latitude 22°, also in Saudi Arabia. Whereas, the highest Shannon-Wiener Diversity Index was found in reefs at the latitude 22° (H`=2.4) and the lowest was found in reefs at the latitude 20° (H`=0.6). This study revealed marked differences in the structure of ornamental fish assemblages with latitudinal distribution. The data support the presence of two major biogeographic groups of fishes in the Red Sea and Gulf of Aden: the southern Red Sea and Gulf of Aden group and the group in the northern and central Red Sea. Strong correlations were found between live coral cover and the number of fish species, abundance and Shannon-Wiener Diversity indices, and the strength of these correlations varied among the reefs. A

  16. Spatial distribution of fifty ornamental fish species on coral reefs in the Red Sea and Gulf of Aden

    Directory of Open Access Journals (Sweden)

    Maroof Khalaf

    2014-01-01

    Full Text Available The spatial distribution of 50 ornamental fish species from shallow water habitats on coral reefs were investigated using visual census techniques, between latitudes 11−29°N in the Red Sea, in Jordan, Egypt, Saudi Arabia, and Yemen, and in the adjacent Gulf of Aden in Djibouti. One hundred eighteen transects (each 100×5 m were examined in 29 sites (3−8 sites per country. A total of 522,523 fish individuals were counted during this survey, with mean abundance of 4428.2 ± 87.26 individual per 500 m² transect. In terms of relative abundance (RA, the most abundant species were Blue green damselfish, Chromis viridis (RA=54.4%, followed by Sea goldie, Pseudanthias squamipinnis (RA= 34.7, Whitetail dascyllus, Dascyllus aruanus (RA= 2.6%, Marginate dascyllus, Dascyllus marginatus (RA= 2.0, Red Sea eightline flasher Paracheilinus octotaenia (RA=1.0, and Klunzinger’s wrasse, Thalassoma rueppellii (0.7%. The highest number of species (S per 500 m² transect was found on reefs at the latitude 20° in Saudi Arabia (S=21.8, and the lowest number of species was found at the latitude 15° in Djibouti (S=11.11. The highest mean abundance (8565.8 was found on reefs at latitude 20° in Saudi Arabia and the lowest mean abundance (230 was found on reefs at latitude 22°, also in Saudi Arabia. Whereas, the highest Shannon-Wiener Diversity Index was found in reefs at the latitude 22° (H`=2.4 and the lowest was found in reefs at the latitude 20° (H`=0.6. This study revealed marked differences in the structure of ornamental fish assemblages with latitudinal distribution. The data support the presence of two major biogeographic groups of fishes in the Red Sea and Gulf of Aden: the southern Red Sea and Gulf of Aden group and the group in the northern and central Red Sea. Strong correlations were found between live coral cover and the number of fish species, abundance and Shannon-Wiener Diversity indices, and the strength of these correlations varied among the

  17. Genetic population structure of the lionfish Pterois miles (Scorpaenidae, Pteroinae) in the Gulf of Aqaba and northern Red Sea.

    Science.gov (United States)

    Kochzius, Marc; Blohm, Dietmar

    2005-03-14

    The aim of this study is to reveal gene flow between populations of the coral reef dwelling lionfish Pterois miles in the Gulf of Aqaba and northern Red Sea. Due to the fjord-like hydrography and topology of the Gulf of Aqaba, isolation of populations might be possible. Analysis of 5' mitochondrial control region sequences from 94 P. miles specimens detected 32 polymorphic sites, yielding 38 haplotypes. Sequence divergence among different haplotypes ranged from 0.6% to 9.9% and genetic diversity was high (h=0.85, pi=1.9%). AMOVA indicates panmixia between the Gulf of Aqaba and northern Red Sea, but analysis of migration pattern shows an almost unidirectional migration originating from the Red Sea.

  18. A deep sea community at the Kebrit brine pool in the Red Sea

    KAUST Repository

    Vestheim, Hege

    2015-02-26

    Approximately 25 deep sea brine pools occur along the mid axis of the Red Sea. These hypersaline, anoxic, and acidic environments have previously been reported to host diverse microbial communities. We visited the Kebrit brine pool in April 2013 and found macrofauna present just above the brine–seawater interface (~1465 m). In particular, inactive sulfur chimneys had associated epifauna of sea anemones, sabellid type polychaetes, and hydroids, and infauna consisting of capitellid polychaetes, gastropods of the genus Laeviphitus (fam. Elachisinidae), and top snails of the family Cocculinidae. The deep Red Sea generally is regarded as extremely poor in benthos. We hypothesize that the periphery along the Kebrit holds increased biomass and biodiversity that are sustained by prokaryotes associated with the brine pool or co-occurring seeps.

  19. Population Genetic Structure of red mullet (Mullus barbatus L. in Turkish Sea Based on Mitochondrial DNA

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    Fevzi Bardakci

    2014-06-01

    Full Text Available Aim: Mullus barbatus (red mullet is a commercial fish species naturally distributed from Eastern Atlantic: British Isles to Dakar, Senegal, Canary Islands, Mediterranean and Black Sea. There is no study in our knowledge aimed to determine population genetic structuring and genetic stocks of M. barbatus species in territorial waters of Turkey. Only a few studies have been carried out on their genetics in Turkey which are limited to determination of phylogenetic relationships between species in familia of Mullidae. In this study population genetic structure and genetic diversity of red mullet (Mullus barbatus L. in Turkish Seas was determined using sequence data of mitochondrial DNA control region. Material and Methods: Red mullet sample were collected from the Mediterranean Sea (Mersin, Antalya, the Aegean Sea (Ayvalık, Marmara Sea (Bandırma, the Black Sea (Zonguldak, Trabzon, Fatsa and Hopa. mtDNA control region of 410 bp in length were amplified and subsequently sequenced. The sequences were aligned in Bioedit ver 7.1.3.0 (Hall, 1999. Genetic distance between populations (γst (Nei, 1982, haplotype diversities (h, nucleotide diversities(π were detected by DNAsp ver. 5.10 (Rozas et al., 2003. Based on pairwise distance matrix data a UPGMA dendogram was constructed by MEGA 5.05 (Kumar et al., 2004. To explain genetic structuring of samples we performed analysis of molecular variance (AMOVA using Arlequin ver. 3.5 (Excoffier et al., 2010. Results: In total 190 individuals were studied and alignment of partial control region of mtDNA revealed 98 mtDNA haplotypes with 75 polymorphic sites. The average of nucleotide diversities and haplotype diversities were calculated 0,015 and 0,963 respectively. Haplotype and nucleotide (π diversities among the populations ranged from 0,907 (Zonguldak to 0,972 (Trabzon and from 0.0155 (Trabzon to 0,0114 (Bandırma, respectively. Distance tree based on gammast pairwise comparisons revealed two main clades, the

  20. Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

    KAUST Repository

    Qian, Peiyuan

    2010-07-29

    The ecosystems of the Red Sea are among the least-explored microbial habitats in the marine environment. In this study, we investigated the microbial communities in the water column overlying the Atlantis II Deep and Discovery Deep in the Red Sea. Taxonomic classification of pyrosequencing reads of the 16S rRNA gene amplicons showed vertical stratification of microbial diversity from the surface water to 1500 m below the surface. Significant differences in both bacterial and archaeal diversity were observed in the upper (2 and 50 m) and deeper layers (200 and 1500 m). There were no obvious differences in community structure at the same depth for the two sampling stations. The bacterial community in the upper layer was dominated by Cyanobacteria whereas the deeper layer harbored a large proportion of Proteobacteria. Among Archaea, Euryarchaeota, especially Halobacteriales, were dominant in the upper layer but diminished drastically in the deeper layer where Desulfurococcales belonging to Crenarchaeota became the dominant group. The results of our study indicate that the microbial communities sampled in this study are different from those identified in water column in other parts of the world. The depth-wise compositional variation in the microbial communities is attributable to their adaptations to the various environments in the Red Sea. © 2011 International Society for Microbial Ecology All rights reserved.

  1. Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

    KAUST Repository

    Qian, Peiyuan; Wang, Yong; Lee, Onon; Lau, Chunkwan; Yang, Jiangke; Lafi, Feras Fawzi; Al-Suwailem, Abdulaziz M.; Wong, Tim

    2010-01-01

    The ecosystems of the Red Sea are among the least-explored microbial habitats in the marine environment. In this study, we investigated the microbial communities in the water column overlying the Atlantis II Deep and Discovery Deep in the Red Sea. Taxonomic classification of pyrosequencing reads of the 16S rRNA gene amplicons showed vertical stratification of microbial diversity from the surface water to 1500 m below the surface. Significant differences in both bacterial and archaeal diversity were observed in the upper (2 and 50 m) and deeper layers (200 and 1500 m). There were no obvious differences in community structure at the same depth for the two sampling stations. The bacterial community in the upper layer was dominated by Cyanobacteria whereas the deeper layer harbored a large proportion of Proteobacteria. Among Archaea, Euryarchaeota, especially Halobacteriales, were dominant in the upper layer but diminished drastically in the deeper layer where Desulfurococcales belonging to Crenarchaeota became the dominant group. The results of our study indicate that the microbial communities sampled in this study are different from those identified in water column in other parts of the world. The depth-wise compositional variation in the microbial communities is attributable to their adaptations to the various environments in the Red Sea. © 2011 International Society for Microbial Ecology All rights reserved.

  2. Sighting of Red-breasted Parakeet Psittacula alexandri (Linnaeus, 1758 (Psittaciformes: Psittaculidae from Vellayani, Thiruvananthapuram, Kerala, India

    Directory of Open Access Journals (Sweden)

    Linda John

    2016-04-01

    Full Text Available Red-breasted Parakeet is one among the most widespread parakeets of the world.  The ‘Near Threatened’ bird has been in pet trade for long and is already known as a feral bird from major cities in India.  The biodiversity of India has been threatened by many alien invasive species and some have been of a serious threat to native species pushing them to extinction.  Though Red-breasted Parakeet with a limited population in many of the cities is of no immediate threat, an increase in population can be of serious threat to native bird species.  In this paper, we report the new sighting of Red-breasted Parakeet from Vellayani-Punjakari wetlands, Thiruvananthapuram, Kerala and discuss the possible threats this particular species can impart to the native bird diversity

  3. Variation in haematozoan parasitism at local and landscape levels in the red-billed quelea Quelea quelea

    DEFF Research Database (Denmark)

    Durrant, Kate L.; Reed, Jennifer L.; Jones, Peter J.

    2007-01-01

    The red-billed quelea Quelea quelea, one of the most abundant birds in the world, presents two fundamental conundrums that we investigate here with a novel approach using blood parasite assemblages at two spatial scales, landscape and individual. The quelea of southern Africa Q. q. lathamii...... parasite. At a finer scale, the colourful and variable breeding plumage of male red-billed quelea has not previously shown a correlation with predictors of quality, as it does in many other bird species. The male's breeding plumage is partially based on carotenoid colouration, the quality of which has been...... to indicate quality. Finally, we recovered the greatest number of haematozoan lineages from any phylogenetic survey of a single host species to date. Understanding the reasons for the extreme diversity of parasite lineages in this species may assist in explaining the success of the red-billed quelea...

  4. Enhancement of Energy Harvesting Performance by a Coupled Bluff Splitter Body and PVEH Plate through Vortex Induced Vibration near Resonance

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    Wei Ken Chin

    2017-09-01

    Full Text Available Inspired by vortex induced vibration energy harvesting development as a new source of renewable energy, a T-shaped design vibration energy harvester is introduced with the aim of enhancing its performance through vortex induced vibration at near resonance conditions. The T-shaped structural model designed consists of a fixed boundary aluminum bluff splitter body coupled with a cantilever piezoelectric vibration energy harvesters (PVEH plate model which is a piezoelectric bimorph plate made of a brass plate sandwiched between 2 lead zirconate titanate (PZT plates. A 3-dimensional Fluid-Structure Interaction simulation analysis is carried out with Reynolds Stress Turbulence Model under wind speed of 7, 10, 12, 14, 16, 18, 19, 20, 22.5, and 25 m/s. The results showed that with 19 m/s wind speed, the model generates 75.758 Hz of vortex frequency near to the structural model’s natural frequency of 76.9 Hz. Resonance lock-in therefore occurred, generating a maximum displacement amplitude of 2.09 mm or a 49.76% increment relatively in vibrational amplitude. Under the effect of resonance at the PVEH plate’s fundamental natural frequency, it is able to generate the largest normalized power of 13.44 mW/cm3g2.

  5. Product (RED)

    DEFF Research Database (Denmark)

    Ponte, Stefano

    2011-01-01

    ) and the consumers who buy iconic brand products to help ‘distant others’. While in many other forms of causumerism, labels or certification systems ‘prove’ that a product is just, in RED, aid celebrities provide the proof. From the consumer point of view both labels and celebrities provide a similar simplification...... of complex social, economic, and environmental processes. At the same time, we argue that there are important distinctions as well—labels and certifications are ultimately about improving the conditions of production, whereas RED is about accepting existing production and trade systems and donating......(PRODUCT)RED™ (hereafter RED) is a cobranding initiative launched in 2006 by the aid celebrity Bono to raise money from product sales to support The Global Fund to Fight AIDS, Tuberculosis and Malaria. In this paper we argue that RED is shifting the boundaries of ‘causumerism’ (shopping...

  6. Intestinal Microbiota and Species Diversity of Campylobacter and Helicobacter spp. in Migrating Shorebirds in Delaware Bay

    Science.gov (United States)

    Using rDNA sequencing analysis, we examined the bacterial diversity and the presence of opportunistic bacterial pathogens (i.e., Campylobacter and Helicobacter) in Red Knot (Calidris canutus, n=40), Ruddy Turnstone (Arenaria interpres, n=35), and Semipalmated Sandpiper (Calidris ...

  7. Red Misfits in the Sloan Digital Sky Survey: properties of star-forming red galaxies

    Science.gov (United States)

    Evans, Fraser A.; Parker, Laura C.; Roberts, Ian D.

    2018-06-01

    We study Red Misfits, a population of red, star-forming galaxies in the local Universe. We classify galaxies based on inclination-corrected optical colours and specific star formation rates derived from the Sloan Digital Sky Survey Data Release 7. Although the majority of blue galaxies are star-forming and most red galaxies exhibit little to no ongoing star formation, a small but significant population of galaxies (˜11 per cent at all stellar masses) are classified as red in colour yet actively star-forming. We explore a number of properties of these galaxies and demonstrate that Red Misfits are not simply dusty or highly inclined blue cloud galaxies or quiescent red galaxies with poorly constrained star formation. The proportion of Red Misfits is nearly independent of environment, and this population exhibits both intermediate morphologies and an enhanced likelihood of hosting an active galactic nucleus. We conclude that Red Misfits are a transition population, gradually quenching on their way to the red sequence and this quenching is dominated by internal processes rather than environmentally driven processes. We discuss the connection between Red Misfits and other transition galaxy populations, namely S0s, red spirals, and green valley galaxies.

  8. Statistical and molecular analyses of evolutionary significance of red-green color vision and color blindness in vertebrates.

    Science.gov (United States)

    Yokoyama, Shozo; Takenaka, Naomi

    2005-04-01

    Red-green color vision is strongly suspected to enhance the survival of its possessors. Despite being red-green color blind, however, many species have successfully competed in nature, which brings into question the evolutionary advantage of achieving red-green color vision. Here, we propose a new method of identifying positive selection at individual amino acid sites with the premise that if positive Darwinian selection has driven the evolution of the protein under consideration, then it should be found mostly at the branches in the phylogenetic tree where its function had changed. The statistical and molecular methods have been applied to 29 visual pigments with the wavelengths of maximal absorption at approximately 510-540 nm (green- or middle wavelength-sensitive [MWS] pigments) and at approximately 560 nm (red- or long wavelength-sensitive [LWS] pigments), which are sampled from a diverse range of vertebrate species. The results show that the MWS pigments are positively selected through amino acid replacements S180A, Y277F, and T285A and that the LWS pigments have been subjected to strong evolutionary conservation. The fact that these positively selected M/LWS pigments are found not only in animals with red-green color vision but also in those with red-green color blindness strongly suggests that both red-green color vision and color blindness have undergone adaptive evolution independently in different species.

  9. Inhibitory Effects of Red Wine on Lipid Oxidation in Fish Oil Emulsion and Angiogenesis in Zebrafish Embryo.

    Science.gov (United States)

    Sun, Haiyan; Zhang, Yulin; Shen, Yixiao; Zhu, Yongchao; Wang, Hua; Xu, Zhimin

    2017-03-01

    The capabilities of red wine against lipid oxidation and angiogenesis were evaluated by using a fish oil emulsion system and an in vivo zebrafish embryos model, respectively. The red wine contained 12 different antioxidant phenolics which levels were led by anthocyanins (140.46 mg/L), catechin (55.08 mg/L), and gallic acid (46.76 mg/L). The diversity of the phenolics in red wine was greater than the tea, coffee, or white wine selected as a peer control in this study. The total phenolics concentration of red wine was 305.53 mg/L, although the levels of tea, coffee, and white wine were 85.59, 76.85, and 26.57 mg/L, respectively. The activity of red wine in scavenging DPPH (2,2-diphenyl-1-picrylhydrazyl) free radicals was approximately 4 times higher than the tea and 8 times than the coffee or white wine. The red wine showed the highest capability in preventing long chain PUFA oxidation in the fish oil emulsion. Because of the outstanding antioxidant activity of red wine, the red wine dried extract was used to monitor its inhibitory effect against angiogenesis by using transgenic zebrafish embryos (Tg[fli1:egfp] y1 ) with fluorescent blood vessels. After incubated in 100 μg/mL of the extract solution for 26 h pf, each of the embryos had a lower number of intersegmental vessel than the control embryo. The inhibition rate of red wine extract against growing of angiogenic blood vessel reached 100%. © 2017 Institute of Food Technologists®.

  10. Parasitism finds many solutions to the same problems in red algae (Florideophyceae, Rhodophyta).

    Science.gov (United States)

    Freese, Jillian M; Lane, Christopher E

    2017-06-01

    Parasitic red algae evolve from a common ancestor with their hosts, parasitizing cousins using familiar cellular mechanisms. They have independently evolved over one hundred times within the exclusively multicellular red algal class Florideophyceae. Reduced morphology, a lack of pigmentation, and direct cell-cell connections with their hosts are markers of red algal parasitism. With so many potential evolutionary pathways, red algal parasite diversity offers a unique test case to understand the earliest stages of this lifestyle transition. Molecular and morphological investigations led to the categorization of these parasites based on their relationship to their host. "Adelphoparasites" are phylogenetically close to their hosts, often infecting a sister species, whereas "alloparasites" are more distantly related to their hosts. The differentiation of these parasites, based on their phylogenetic relationship to their host, has resulted in a simplified classification of these parasites that may not reflect the many evolutionary pathways they take to arrive at a similar endpoint. Accordingly, many parasites fall into a gray area between adelphoparasite and alloparasite definitions, challenging the established features we use to classify them. Molecular phylogenetic research has been essential in identifying gaps in knowledge, but microscopy needs to be reincorporated in order to address red algal parasite developmental variation to establish a new paradigm. The joint utilization of molecular and microscopic methods will be critical in identifying the genomic and physiological traits of both nascent and well-established parasites. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations.

    Science.gov (United States)

    Geoffroy, Alexandre; Destombe, Christophe; Kim, Byeongseok; Mauger, Stéphane; Raffo, María Paula; Kim, Myung Sook; Le Gall, Line

    2016-08-01

    The red alga Polysiphonia morrowii, native to the North Pacific (Northeast Asia), has recently been reported worldwide. To determine the origin of the French and Argentine populations of this introduced species, we compared samples from these two areas with samples collected in Korea and at Hakodate, Japan, the type locality of the species. Combined analyses of chloroplastic (rbcL) and mitochondrial (cox1) DNA revealed that the French and Argentine populations are closely related and differ substantially from the Korean and Japanese populations. The genetic structure of P. morrowii populations from South Atlantic and North Atlantic, which showed high haplotype diversity compared with populations from the North Pacific, suggested the occurrence of multiple introduction events from areas outside of the so-called native regions. Although similar, the French and Argentine populations are not genetically identical. Thus, the genetic structure of these two introduced areas may have been modified by cryptic and recurrent introduction events directly from Asia or from other introduced areas that act as introduction relays. In addition, the large number of private cytoplasmic types identified in the two introduced regions strongly suggests that local populations of P. morrowii existed before the recent detection of these invasions. Our results suggest that the most likely scenario is that the source population(s) of the French and Argentine populations was not located only in the North Pacific and/or that P. morrowii is a cryptogenic species.

  12. Bioavailability and Biokinetics of Anthocyanins From Red Grape Juice and Red Wine

    Directory of Open Access Journals (Sweden)

    Roland Bitsch

    2004-01-01

    Full Text Available In a comparative study, 9 healthy volunteers ingested a single oral dose of 400 mL red grape juice or red wine with dose-adjusted anthocyanin content (283.5 mg or 279.6 mg, resp. in crossover. The content of anthocyanin glucosides was detected in plasma and urinary excretion. Additionally, the plasmatic antioxidant activity was assessed after intake. Based on the plasma content, biokinetic criteria of the single anthocyanins were calculated, such as AUC, cmax, tmax, and the elimination rate t1/2. The urinary excretion of total anthocyanins differed significantly and amounted to 0.18% (red wine and 0.23% (red grape juice of the administered dose. Additionally, the plasmatic antioxidant activity increased to higher levels after juice ingestion compared to wine. The intestinal absorption of the anthocyanins of red grape juice seemed to be improved compared to red wine, suggesting a possible synergistic effect of the glucose content of the juice. The improved absorption resulted in an enhanced plasmatic bioactivity.

  13. Erosion Control and Environment Restoration Plan Development, Matagorda County, Texas. Phase 1: Preliminary Investigation

    Science.gov (United States)

    2012-07-01

    Matagorda Peninsula east of MCR where a thicker cover of sand with vegetated dunes can be observed. 2.8 Typical beach profile Beach profile shape is a...clay bluffs on the beach face o Small tidal range, defined in Chapter 2, tends to focus wave action on the bluff toe o Breaking waves propel shell...toward the bluff, abrading the bluff toe o Abrasion undercuts the bluff, causing large sections to fail  Slope failure o Cyclical wave loading on

  14. What makes red quasars red?. Observational evidence for dust extinction from line ratio analysis

    Science.gov (United States)

    Kim, Dohyeong; Im, Myungshin

    2018-02-01

    Red quasars are very red in the optical through near-infrared (NIR) wavelengths, which is possibly due to dust extinction in their host galaxies as expected in a scenario in which red quasars are an intermediate population between merger-driven star-forming galaxies and unobscured type 1 quasars. However, alternative mechanisms also exist to explain their red colors: (i) an intrinsically red continuum; (ii) an unusual high covering factor of the hot dust component, that is, CFHD = LHD/Lbol, where the LHD is the luminosity from the hot dust component and the Lbol is the bolometric luminosity; and (iii) a moderate viewing angle. In order to investigate why red quasars are red, we studied optical and NIR spectra of 20 red quasars at z 0.3 and 0.7, where the usage of the NIR spectra allowed us to look into red quasar properties in ways that are little affected by dust extinction. The Paschen to Balmer line ratios were derived for 13 red quasars and the values were found to be 10 times higher than unobscured type 1 quasars, suggesting a heavy dust extinction with AV > 2.5 mag. Furthermore, the Paschen to Balmer line ratios of red quasars are difficult to explain with plausible physical conditions without adopting the concept of the dust extinction. The CFHD of red quasars are similar to, or marginally higher than, those of unobscured type 1 quasars. The Eddington ratios, computed for 19 out of 20 red quasars, are higher than those of unobscured type 1 quasars (by factors of 3-5), and hence the moderate viewing angle scenario is disfavored. Consequently, these results strongly suggest the dust extinction that is connected to an enhanced nuclear activity as the origin of the red color of red quasars, which is consistent with the merger-driven quasar evolution scenario. Full Table A.1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/610/A31

  15. When red means go : non-normative effects of red under sensation seeking

    NARCIS (Netherlands)

    Mehta, R.; Demmers, J.; van Dolen, W.M.; Weinberg, C.B.

    Although previous research has identified red as the color of compliance, the current work proposes that this effect of red may not hold under high sensation-seeking propensity conditions. It is argued that the color red has the capability to induce arousal, which in turn has been shown to enhance a

  16. Male red ornamentation is associated with female red sensitivity in sticklebacks.

    Directory of Open Access Journals (Sweden)

    Ingolf P Rick

    Full Text Available Sexual selection theory proposes correlated evolutionary changes in mating preferences and secondary sexual characters based on a positive genetic correlation between preference and the preferred trait. Empirical work has provided support for a genetic covariation between female preference and male attractiveness in several taxa. Here, we study parent and offspring visual traits in threespine sticklebacks, Gasterosteus aculeatus. While focusing on the proximate basis of mating preferences, we compare the red breeding coloration of males, which strongly contributes to female choice, with their daughters' red sensitivity measured by optomotor response thresholds. We show that the red color expression of fathers correlates well with their daughters' red sensitivity. Given that a within-population genetic correlation between signal and preference was experimentally confirmed for the red coloration in sticklebacks, our results indicate a proximate mechanism in terms of perceptual sensitivity being involved in the co-evolution of female preferences and male mating signals.

  17. Whither Risk Assessment: New Challenges and Opportunities a Third of a Century After the Red Book.

    Science.gov (United States)

    Greenberg, Michael; Goldstein, Bernard D; Anderson, Elizabeth; Dourson, Michael; Landis, Wayne; North, D Warner

    2015-11-01

    Six multi-decade-long members of SRA reflect on the 1983 Red Book in order to examine the evolving relationship between risk assessment and risk management; the diffusion of risk assessment practice to risk areas such as homeland security and transportation; the quality of chemical risk databases; challenges from other groups to elements at the core of risk assessment practice; and our collective efforts to communicate risk assessment to a diverse set of critical groups that do not understand risk, risk assessment, or many other risk-related issues. The authors reflect on the 10 recommendations in the Red Book and present several pressing challenges for risk assessment practitioners. © 2015 Society for Risk Analysis.

  18. Using high resolution ortho-imagery and elevation data to assess resilience along the southern Chukchi Coast between 2003 and 2016

    Science.gov (United States)

    Farquharson, L. M.; Jones, B. M.

    2017-12-01

    Permafrost affected coastlines in Arctic Alaska are highly vulnerable to climate change's effects on coastal processes. A unique suite of factors set Arctic coastlines apart from those at lower latitudes. Sea ice, Arctic Ocean storm tracks, tides, and constantly changing wave regimes interact with and influence ice-rich permafrost lowlands, seasonally sea ice covered lagoons, and ice-cemented barrier islands. This creates a dynamic system with a diverse morphology that is in constant flux. Rapid changes in the extent and seasonality of sea ice cover and rising temperatures threaten to trigger rapid and possibly drastic changes in coastal erosion and accretion along Arctic coastlines over the coming century. To explore how coastlines in Arctic Alaska are responding to ongoing climate change, we analyzed ortho-imagery from 2003 (50 cm) and 2016 (30 cm) in combination with digital elevation models derived from 2003 LiDAR data (100 cm) and 2016 Structure-from-Motion data (20 cm) for a 30 km stretch of permafrost affected coastline on the northern Seward Peninsula in Alaska. The coastal system at this study site is characterized by 5 m to 15 m high ice-rich permafrost bluffs and 1 m to 5 m high barrier islands. Over the 13-year study period, 1.0 m/yr of retreat occurred on average along the study coast primarily through thermoerosion and thermodenudation. Over the study period, volumetric loss per meter of coastline reached up to 130 m3 along permafrost bluffs and 21 m3 along barrier island foredune systems. Accretion was limited to the far end of Cape Espenburg spit. In addition to erosion of the coastal permafrost bluffs, we also quantified thermokarst gully formation, storm overwash events, and coastal dune deflation. The formation of thermoerosion gullies along bluff tops appears to exacerbate permafrost bluff erosion rates. Results from this study will contribute new understanding to the relatively poorly understood field of arctic coastal geomorphology.

  19. Microbial community composition of deep-sea corals from the Red Sea provides insight into functional adaption to a unique environment.

    Science.gov (United States)

    Röthig, Till; Yum, Lauren K; Kremb, Stephan G; Roik, Anna; Voolstra, Christian R

    2017-03-17

    Microbes associated with deep-sea corals remain poorly studied. The lack of symbiotic algae suggests that associated microbes may play a fundamental role in maintaining a viable coral host via acquisition and recycling of nutrients. Here we employed 16 S rRNA gene sequencing to study bacterial communities of three deep-sea scleractinian corals from the Red Sea, Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. We found diverse, species-specific microbiomes, distinct from the surrounding seawater. Microbiomes were comprised of few abundant bacteria, which constituted the majority of sequences (up to 58% depending on the coral species). In addition, we found a high diversity of rare bacteria (taxa at 90% of all bacteria). Interestingly, we identified anaerobic bacteria, potentially providing metabolic functions at low oxygen conditions, as well as bacteria harboring the potential to degrade crude oil components. Considering the presence of oil and gas fields in the Red Sea, these bacteria may unlock this carbon source for the coral host. In conclusion, the prevailing environmental conditions of the deep Red Sea (>20 °C, <2 mg oxygen L -1 ) may require distinct functional adaptations, and our data suggest that bacterial communities may contribute to coral functioning in this challenging environment.

  20. Microbial community composition of deep-sea corals from the Red Sea provides insight into functional adaption to a unique environment

    KAUST Repository

    Röthig, Till

    2017-03-17

    Microbes associated with deep-sea corals remain poorly studied. The lack of symbiotic algae suggests that associated microbes may play a fundamental role in maintaining a viable coral host via acquisition and recycling of nutrients. Here we employed 16 S rRNA gene sequencing to study bacterial communities of three deep-sea scleractinian corals from the Red Sea, Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. We found diverse, species-specific microbiomes, distinct from the surrounding seawater. Microbiomes were comprised of few abundant bacteria, which constituted the majority of sequences (up to 58% depending on the coral species). In addition, we found a high diversity of rare bacteria (taxa at <1% abundance comprised >90% of all bacteria). Interestingly, we identified anaerobic bacteria, potentially providing metabolic functions at low oxygen conditions, as well as bacteria harboring the potential to degrade crude oil components. Considering the presence of oil and gas fields in the Red Sea, these bacteria may unlock this carbon source for the coral host. In conclusion, the prevailing environmental conditions of the deep Red Sea (>20 °C, <2 mg oxygen L−1) may require distinct functional adaptations, and our data suggest that bacterial communities may contribute to coral functioning in this challenging environment.

  1. Erosional dynamics and morphological analysis along the southeastern Lake Ontario shoreline, New York state

    International Nuclear Information System (INIS)

    Covello, D.M.; Pinet, P.R.; McClennen, C.E.; Knotts, K.A.

    1993-01-01

    Glacial drumlins, trending near perpendicular to the southeastern shore of Lake Ontario, display two distinct forms of coastal erosion. Some drumlins are eroding into beachfront bluffs that feature amphitheater-shaped gullies with steep headwalls and moderately sloping floors, separated by narrow, resistant, steep-sided ridges. Other drumlins of similar till composition, vegetative cover, and wave exposure are eroding into bluff's characterized by steep, planar (i.e., ungullied) surfaces. Aerial photograph and topographic analyses, combines with field observations, clearly indicate that the dominant factors controlling these morphological differences are bluff height and the manner of erosional retreat. The large volume of sediments supplied to the base of high (>30 m) bluffs creates broad (≤15 m) and thick (≤2 m) colluvial terraces between the beach and bluff base. Except during severe storms, these colluvial deposits reduce or prevent wave undercutting of the cliff base and subsequent slumping of the cliff face. This results in channeling and headward erosion of the bluff faces that, in time, evolve into a deeply incensed (>10 m) gully system. In contrast, at the base of low (<20 m) bluffs, colluvial beach terraces are smaller (≤10 m broad; <0.5 m thick) or nonexistent because the rate of wave erosion exceeds the rate of sediment supply from the bluffs. Thus, the gullying effects of surface water runoff, mud flows, rain and wind attack, so influential on high bluffs, are overwhelmed by the frequency of the slumping and sliding processes, producing planar morphologies on low-lying bluffs. Drumlin bluffs of intermediate height are affected by both slumping and gullying processes, and tend to develop a quasi-planar channeled surface

  2. The Assessment of Current Biogeographic Patterns of Coral Reef Fishes in the Red Sea by Incorporating Their Evolutionary and Ecological Background

    KAUST Repository

    Robitzch Sierra, Vanessa S. N.

    2017-03-01

    The exceptional environment of the Red Sea has lead to high rates of endemism and biodiversity. Located at the periphery of the world’s coral reefs distribution, its relatively young reefs offer an ideal opportunity to study biogeography and underlying evolutionary and ecological triggers. Here, I provide baseline information on putative seasonal recruitment patterns of reef fishes along a cross shelf gradient at an inshore, mid-shelf, and shelf-edge reef in the central Saudi Arabian Red Sea. I propose a basic comparative model to resolve biogeographic patterns in endemic and cosmopolitan reef fishes. Therefore, I chose the genetically, biologically, and ecologically similar coral-dwelling damselfishes Dascyllus aruanus and D. marginatus as a model species-group. As a first step, basic information on the distribution, population structure, and genetic diversity is evaluated within and outside the Red Sea along most of their global distribution. Second, pelagic larval durations (PLDs) within the Red Sea environmental gradient are explored. For the aforementioned, PLDs of the only other Red Sea Dascyllus, D. trimaculatus, are included for a more comprehensive comparison. Third, to further assess ongoing pathways of connectivity and geneflow related to larval behavior and dispersal in Red Sea reef fishes, the genetic composition and kinship of a single recruitment cohort of D. aruanus arriving together at one single reef is quantified using single nuclear polymorphisms (SNPs). Genetic diversity and relatedness of the recruits are compared to that of the standing population at the settlement reef, providing insight into putative dispersal strategies and behavior of coral reef fish larvae. As a fourth component to study traits shaping biogeography, the ecology and adaptive potential of the cosmopolitan D. aruanus is described by studying morphometric-geometrics of the body structure in relation to the stomach content and prey type from specimen along the cross

  3. Noncytotoxic orange and red/green derivatives of DsRed-Express2 for whole-cell labeling

    Directory of Open Access Journals (Sweden)

    Glick Benjamin S

    2009-04-01

    Full Text Available Abstract Background Whole-cell labeling is a common application of fluorescent proteins (FPs, but many red and orange FPs exhibit cytotoxicity that limits their use as whole-cell labels. Recently, a tetrameric red FP called DsRed-Express2 was engineered for enhanced solubility and was shown to be noncytotoxic in bacterial and mammalian cells. Our goal was to create derivatives of this protein with different spectral properties. Results Building on previous studies of DsRed mutants, we created two DsRed-Express2 derivatives: E2-Orange, an orange FP, and E2-Red/Green, a dual-color FP with both red and green emission. We show that these new FPs retain the low cytotoxicity of DsRed-Express2. In addition, we show that these new FPs are useful as second or third colors for flow cytometry and fluorescence microscopy. Conclusion E2-Orange and E2-Red/Green will facilitate the production of healthy, stably fluorescent cell lines and transgenic organisms for multi-color labeling studies.

  4. Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea

    KAUST Repository

    Ngugi, David; Antunes, Andre; Brune, Andreas; Stingl, Ulrich

    2011-01-01

    The Red Sea is a unique marine ecosystem with contrasting gradients of temperature and salinity along its north-to-south axis. It is an extremely oligotrophic environment that is characterized by perpetual year-round water column stratification, high annual solar irradiation, and negligible riverine and precipitation inputs. In this study, we investigated whether the contemporary environmental conditions shape community assemblages by pyrosequencing 16S rRNA genes of bacteria in surface water samples collected from the northeastern half of this water body. A combined total of 1855 operational taxonomic units (OTUs) were recovered from the 'small-cell' and 'large-cell' fractions. Here, a few major OTUs affiliated with Cyanobacteria and Proteobacteria accounted for â93% of all sequences, whereas a tail of 'rare' OTUs represented most of the diversity. OTUs allied to Surface 1a/b SAR11 clades and Prochlorococcus related to the high-light-adapted (HL2) ecotype were the most widespread and predominant sequence types. Interestingly, the frequency of taxa that are typically found in the upper mesopelagic zone was significantly elevated in the northern transects compared with those in the central, presumably as a direct effect of deep convective mixing in the Gulf of Aqaba and water exchange with the northern Red Sea. Although temperature was the best predictor of species richness across all major lineages, both spatial and environmental distances correlated strongly with phylogenetic distances. Our results suggest that the bacterial diversity of the Red Sea is as high as in other tropical seas and provide evidence for fundamental differences in the biogeography of pelagic communities between the northern and central regions. © 2011 Blackwell Publishing Ltd.

  5. Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea

    KAUST Repository

    Ngugi, David

    2011-12-01

    The Red Sea is a unique marine ecosystem with contrasting gradients of temperature and salinity along its north-to-south axis. It is an extremely oligotrophic environment that is characterized by perpetual year-round water column stratification, high annual solar irradiation, and negligible riverine and precipitation inputs. In this study, we investigated whether the contemporary environmental conditions shape community assemblages by pyrosequencing 16S rRNA genes of bacteria in surface water samples collected from the northeastern half of this water body. A combined total of 1855 operational taxonomic units (OTUs) were recovered from the \\'small-cell\\' and \\'large-cell\\' fractions. Here, a few major OTUs affiliated with Cyanobacteria and Proteobacteria accounted for â93% of all sequences, whereas a tail of \\'rare\\' OTUs represented most of the diversity. OTUs allied to Surface 1a/b SAR11 clades and Prochlorococcus related to the high-light-adapted (HL2) ecotype were the most widespread and predominant sequence types. Interestingly, the frequency of taxa that are typically found in the upper mesopelagic zone was significantly elevated in the northern transects compared with those in the central, presumably as a direct effect of deep convective mixing in the Gulf of Aqaba and water exchange with the northern Red Sea. Although temperature was the best predictor of species richness across all major lineages, both spatial and environmental distances correlated strongly with phylogenetic distances. Our results suggest that the bacterial diversity of the Red Sea is as high as in other tropical seas and provide evidence for fundamental differences in the biogeography of pelagic communities between the northern and central regions. © 2011 Blackwell Publishing Ltd.

  6. ESR analysis of irradiated red peppers and commercial red peppers in Japan

    International Nuclear Information System (INIS)

    Kameya, Hiromi; Ukai, Mitsuko

    2011-01-01

    ESR analysis of γ-ray irradiated and being treated with different processing red pepper was studied. All the red peppers were commercial expect irradiated one. Processing treatment of red pepper was sun drying, mechanical processing (heating sterilization and powdering treatment). All the samples were weighted and analyzed. The ESR spectrum of the red pepper is composed of a singlet at g=2.00. This signal was originated from organic free radical. It is suggested the effect of heating treatment on the radical formation is not so large and powdering treatment will promote the radical formation of red pepper. ESR singlet signal of the irradiated red pepper showed the large signal intensity and the dose-dependence. The singlet signal intensity of irradiated powder sample showed the almost same value as compared with that of the powder sample with heating treatment. Relaxation times (T 1 and T 2 ) of the singlet signal were calculated. The relaxation behavior and relaxation times of the irradiated sample were different from that of the non-irradiated sample. The value of T 1 , the spin lattice relaxation time, of irradiated sample was increased and T 2 , the spin-spin relaxation time, of irradiated sample was decreased. We concluded that the radical formation of the red pepper is mainly depended on the powdering treatment and irradiation. (author)

  7. Birth and weaning traits in crossbred cattle from Hereford, Angus, Norwegian Red, Swedish Red and White, Wagyu, and Friesian sires.

    Science.gov (United States)

    Casas, E; Thallman, R M; Cundiff, L V

    2012-09-01

    The objective of this study was to characterize breeds representing diverse biological types for birth and weaning traits in crossbred cattle (Bos taurus). Gestation length, calving difficulty, percentage of unassisted calving, percentage of perinatal survival, percentage of survival from birth to weaning, birth weight, weaning weight, BW at 205 d, and ADG was measured in 1,370 calves born and 1,285 calves weaned. Calves were obtained by mating Hereford, Angus, and MARC III (1/4 Hereford, 1/4 Angus, 1/4 Pinzgauer, and 1/4 Red Poll) mature cows to Hereford or Angus (British breeds), Norwegian Red, Swedish Red and White, Wagyu, and Friesian sires. Calves were born during the spring of 1997 and 1998. Sire breed was significant for gestation length, birth weight, BW at 205 d, and ADG (P Angus cows had the shortest (282 d). Offspring from MARC III cows were the heaviest at birth (39.4 kg) when compared with offspring from Hereford (38.2 kg) and Angus (38.6 kg) cows. Progeny from Angus cows were the heaviest at 205 d (235 kg) and grew faster (0.96 kg/d), whereas offspring from Hereford cows were the lightest at 205 d (219 kg) and were the slowest in growth (0.88 kg/d). Sex was significant for gestation length (P = 0.026), birth weight, BW at 205 d, and ADG (P < 0.001). Male calves had a longer gestation length (284 d) when compared with female calves (283 d). Males were heavier than females at birth and at 205 d, and grew faster. Sire breed effects can be optimized by selection and use of appropriate crossbreeding systems.

  8. Red blood cell production

    Science.gov (United States)

    ... bone marrow of bones. Stem cells in the red bone marrow called hemocytoblasts give rise to all of the formed elements in blood. If a hemocytoblast commits to becoming a cell called a proerythroblast, it will develop into a new red blood cell. The formation of a red blood ...

  9. Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers.

    Directory of Open Access Journals (Sweden)

    Jan Janouškovec

    Full Text Available Red algae have the most gene-rich plastid genomes known, but despite their evolutionary importance these genomes remain poorly sampled. Here we characterize three complete and one partial plastid genome from a diverse range of florideophytes. By unifying annotations across all available red algal plastid genomes we show they all share a highly compact and slowly-evolving architecture and uniquely rich gene complements. Both chromosome structure and gene content have changed very little during red algal diversification, and suggest that plastid-to nucleus gene transfers have been rare. Despite their ancient character, however, the red algal plastids also contain several unprecedented features, including a group II intron in a tRNA-Met gene that encodes the first example of red algal plastid intron maturase - a feature uniquely shared among florideophytes. We also identify a rare case of a horizontally-acquired proteobacterial operon, and propose this operon may have been recruited for plastid function and potentially replaced a nucleus-encoded plastid-targeted paralogue. Plastid genome phylogenies yield a fully resolved tree and suggest that plastid DNA is a useful tool for resolving red algal relationships. Lastly, we estimate the evolutionary rates among more than 200 plastid genes, and assess their usefulness for species and subspecies taxonomy by comparison to well-established barcoding markers such as cox1 and rbcL. Overall, these data demonstrates that red algal plastid genomes are easily obtainable using high-throughput sequencing of total genomic DNA, interesting from evolutionary perspectives, and promising in resolving red algal relationships at evolutionarily-deep and species/subspecies levels.

  10. Antimicrobial and anticancer activity and DNA fingerprinting of extracts from Red Sea marine fungal symbiotes.

    OpenAIRE

    Asma Alsed; Marwa M. Azab; Amany K. Ibrahim

    2016-01-01

    Marine microorganisms have become an important source of pharmacologically active metabolites. More specifically, fungi from the marine environment have shown great potential as suggested by the diversity of secondary metabolites. The aim of this study was to look for bioactive natural products from Red Sea derived fungi. Numerous natural products with novel structures and distinct biological activities have been discovered as the secondary metabolites of marine- derived microbes....

  11. First report of Eucoleus boehmi in red foxes (Vulpes vulpes) in Denmark, based on coprological examiantion

    DEFF Research Database (Denmark)

    Al-Sabi, Mohammad Nafi Solaiman; Kapel, Christian Moliin Outzen

    2013-01-01

    the first observations of E. boehmi in Denmark, which is likely an overlooked infection of the upper respiratory tract of red foxes, which can be also found in other canids. Several morphological features of the eggs of E. boehmi can be used to distinguish it from other the closely related trichuroid eggs......Red foxes can be infected with diverse range of parasite species that can be transmitted to humans and pet animals, and the differential diagnosis is essential for veterinary and zoonotic risk assessment. In the present study, faecal flotation and microscopy of parasite eggs was done on 31 foxes...

  12. A Review of Prevention, Diagnosis and Treatment of Relative Energy Deficiency in Sport (RED-S) in Artistic (Synchronized) Swimming.

    Science.gov (United States)

    Robertson, Sherry; Mountjoy, Margo

    2018-05-03

    The syndrome Relative Energy Deficiency in Sport (RED-S) is a clinical entity characterized by low energy availability (LEA), which can negatively affect the health and performance of both male and female athletes. The underlying mechanism of RED-S is an inadequacy of dietary energy to support optimal health and performance. This syndrome refers to impaired physiological function including metabolic rate, menstrual function, bone health, immunity, protein synthesis, and cardiovascular health, with psychological consequences which can either precede (through restrictive dietary habits) or result from RED-S. The term RED-S extends beyond the condition termed the "Female Athlete Triad". Formerly known as synchronized swimming, artistic swimming is an Olympic sport requiring a high level of fitness as well as technical skill and artistry. The risk of RED-S is high in artistic swimming as it is an aesthetic, judged sport with an emphasis on a lean physique. RED-S is of significant concern in the sport of artistic swimming because of the potential negative effects on physical and mental health as well as consequences on athletic performance. This paper reviews health and performance consequences associated with LEA resulting in RED-S in artistic swimming. Medical and nutritional considerations specific to artistic swimming are reviewed and methods to help detect and manage RED-S are discussed. Prevention and management of RED-S in this athlete population should be a priority for coaches and the sport medicine professionals working with artistic swimming athletes should utilize the RED-S CAT, a Clinical Assessment Tool for screening and managing RED-S.

  13. Genetic diversity of the cestode Echinococcus multilocularis in red foxes at a continental scale in Europe.

    Directory of Open Access Journals (Sweden)

    Jenny Knapp

    2009-06-01

    Full Text Available Alveolar echinococcosis (AE is a severe helminth disease affecting humans, which is caused by the fox tapeworm Echinococcus multilocularis. AE represents a serious public health issue in larger regions of China, Siberia, and other regions in Asia. In Europe, a significant increase in prevalence since the 1990s is not only affecting the historically documented endemic area north of the Alps but more recently also neighbouring regions previously not known to be endemic. The genetic diversity of the parasite population and respective distribution in Europe have now been investigated in view of generating a fine-tuned map of parasite variants occurring in Europe. This approach may serve as a model to study the parasite at a worldwide level.The genetic diversity of E. multilocularis was assessed based upon the tandemly repeated microsatellite marker EmsB in association with matching fox host geographical positions. Our study demonstrated a higher genetic diversity in the endemic areas north of the Alps when compared to other areas.The study of the spatial distribution of E. multilocularis in Europe, based on 32 genetic clusters, suggests that Europe can be considered as a unique global focus of E. multilocularis, which can be schematically drawn as a central core located in Switzerland and Jura Swabe flanked by neighbouring regions where the parasite exhibits a lower genetic diversity. The transmission of the parasite into peripheral regions is governed by a "mainland-island" system. Moreover, the presence of similar genetic profiles in both zones indicated a founder event.

  14. Formation and spreading of Red Sea Outflow Water in the Red Sea

    Science.gov (United States)

    Zhai, Ping; Bower, Amy S.; Smethie, William M.; Pratt, Larry J.

    2015-09-01

    Hydrographic data, chlorofluorocarbon-12 (CFC-12) and sulfur hexafluoride (SF6) measurements collected in March 2010 and September-October 2011 in the Red Sea, as well as an idealized numerical experiment are used to study the formation and spreading of Red Sea Outflow Water (RSOW) in the Red Sea. Analysis of inert tracers, potential vorticity distributions, and model results confirm that RSOW is formed through mixed-layer deepening caused by sea surface buoyancy loss in winter in the northern Red Sea and reveal more details on RSOW spreading rates, pathways, and vertical structure. The southward spreading of RSOW after its formation is identified as a layer with minimum potential vorticity and maximum CFC-12 and SF6. Ventilation ages of seawater within the RSOW layer, calculated from the partial pressure of SF6 (pSF6), range from 2 years in the northern Red Sea to 15 years at 17°N. The distribution of the tracer ages is in agreement with the model circulation field which shows a rapid transport of RSOW from its formation region to the southern Red Sea where there are longer circulation pathways and hence longer residence time due to basin wide eddies. The mean residence time of RSOW within the Red Sea estimated from the pSF6 age is 4.7 years. This time scale is very close to the mean transit time (4.8 years) for particles from the RSOW formation region to reach the exit at the Strait of Bab el Mandeb in the numerical experiment.

  15. Environmental barcoding reveals massive dinoflagellate diversity in marine environments.

    Directory of Open Access Journals (Sweden)

    Rowena F Stern

    2010-11-01

    Full Text Available Dinoflagellates are an ecologically important group of protists with important functions as primary producers, coral symbionts and in toxic red tides. Although widely studied, the natural diversity of dinoflagellates is not well known. DNA barcoding has been utilized successfully for many protist groups. We used this approach to systematically sample known "species", as a reference to measure the natural diversity in three marine environments.In this study, we assembled a large cytochrome c oxidase 1 (COI barcode database from 8 public algal culture collections plus 3 private collections worldwide resulting in 336 individual barcodes linked to specific cultures. We demonstrate that COI can identify to the species level in 15 dinoflagellate genera, generally in agreement with existing species names. Exceptions were found in species belonging to genera that were generally already known to be taxonomically challenging, such as Alexandrium or Symbiodinium. Using this barcode database as a baseline for cultured dinoflagellate diversity, we investigated the natural diversity in three diverse marine environments (Northeast Pacific, Northwest Atlantic, and Caribbean, including an evaluation of single-cell barcoding to identify uncultivated groups. From all three environments, the great majority of barcodes were not represented by any known cultured dinoflagellate, and we also observed an explosion in the diversity of genera that previously contained a modest number of known species, belonging to Kareniaceae. In total, 91.5% of non-identical environmental barcodes represent distinct species, but only 51 out of 603 unique environmental barcodes could be linked to cultured species using a conservative cut-off based on distances between cultured species.COI barcoding was successful in identifying species from 70% of cultured genera. When applied to environmental samples, it revealed a massive amount of natural diversity in dinoflagellates. This highlights

  16. Functional roles affect diversity-succession relationships for boreal beetles.

    Directory of Open Access Journals (Sweden)

    Heloise Gibb

    Full Text Available Species diversity commonly increases with succession and this relationship is an important justification for conserving large areas of old-growth habitats. However, species with different ecological roles respond differently to succession. We examined the relationship between a range of diversity measures and time since disturbance for boreal forest beetles collected over a 285 year forest chronosequence. We compared responses of "functional" groups related to threat status, dependence on dead wood habitats, diet and the type of trap in which they were collected (indicative of the breadth of ecologies of species. We examined fits of commonly used rank-abundance models for each age class and traditional and derived diversity indices. Rank abundance distributions were closest to the Zipf-Mandelbrot distribution, suggesting little role for competition in structuring most assemblages. Diversity measures for most functional groups increased with succession, but differences in slopes were common. Evenness declined with succession; more so for red-listed species than common species. Saproxylic species increased in diversity with succession while non-saproxylic species did not. Slopes for fungivores were steeper than other diet groups, while detritivores were not strongly affected by succession. Species trapped using emergence traps (log specialists responded more weakly to succession than those trapped using flight intercept traps (representing a broader set of ecologies. Species associated with microhabitats that accumulate with succession (fungi and dead wood thus showed the strongest diversity responses to succession. These clear differences between functional group responses to forest succession should be considered in planning landscapes for optimum conservation value, particularly functional resilience.

  17. Physical and Chemical Properties of Sintering Red Mud and Bayer Red Mud and the Implications for Beneficial Utilization

    Science.gov (United States)

    Wang, Ping; Liu, Dong-Yan

    2012-01-01

    Performances of two common types of red mud, Bayer red mud and Sintering red mud, were investigated in this research. Their compositions, mechanical properties and microstructure characterization were measured through XRD, TG and SEM analysis. Their shear strength, particle size, density and hydraulic characteristics also had been performed. Huge differences between the basic mineral types of these two kinds of red mud also can be found. The comparison of compositions shows that CaCO3 content in Sintering red mud is higher, Bayer red mud has more hazardous elements such as As, Pb and Hg and both have a high concentration of radioactivity. The micro particle of Bayer red mud is finer and more disperse, but the Sintering red mud has higher shear strength. Combining the TG and hydraulic characteristics analysis, it can be shown that Bayer red mud has higher value of water content and Sintering red mud has higher hydraulic conductivity. The paper then illustrates that Sintering red mud can become the main filling material of supporting structure of red mud stocking yard. Bayer red mud has a high reuse value and also can be used as a mixing material of masonry mortar.

  18. Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity

    KAUST Repository

    Nielsen, Jens; Archer, John A.C.; Essack, Magbubah; Bajic, Vladimir B.; Gojobori, Takashi; Mijakovic, Ivan

    2017-01-01

    The incentive for developing microbial cell factories for production of fuels and chemicals comes from the ability of microbes to deliver these valuable compounds at a reduced cost and with a smaller environmental impact compared to the analogous chemical synthesis. Another crucial advantage of microbes is their great biological diversity, which offers a much larger “catalog” of molecules than the one obtainable by chemical synthesis. Adaptation to different environments is one of the important drives behind microbial diversity. We argue that the Red Sea, which is a rather unique marine niche, represents a remarkable source of biodiversity that can be geared towards economical and sustainable bioproduction processes in the local area and can be competitive in the international bio-based economy. Recent bioprospecting studies, conducted by the King Abdullah University of Science and Technology, have established important leads on the Red Sea biological potential, with newly isolated strains of Bacilli and Cyanobacteria. We argue that these two groups of local organisms are currently most promising in terms of developing cell factories, due to their ability to operate in saline conditions, thus reducing the cost of desalination and sterilization. The ability of Cyanobacteria to perform photosynthesis can be fully exploited in this particular environment with one of the highest levels of irradiation on the planet. We highlight the importance of new experimental and in silico methodologies needed to overcome the hurdles of developing efficient cell factories from the Red Sea isolates.

  19. Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.

    Science.gov (United States)

    Nielsen, Jens; Archer, John; Essack, Magbubah; Bajic, Vladimir B; Gojobori, Takashi; Mijakovic, Ivan

    2017-06-01

    The incentive for developing microbial cell factories for production of fuels and chemicals comes from the ability of microbes to deliver these valuable compounds at a reduced cost and with a smaller environmental impact compared to the analogous chemical synthesis. Another crucial advantage of microbes is their great biological diversity, which offers a much larger "catalog" of molecules than the one obtainable by chemical synthesis. Adaptation to different environments is one of the important drives behind microbial diversity. We argue that the Red Sea, which is a rather unique marine niche, represents a remarkable source of biodiversity that can be geared towards economical and sustainable bioproduction processes in the local area and can be competitive in the international bio-based economy. Recent bioprospecting studies, conducted by the King Abdullah University of Science and Technology, have established important leads on the Red Sea biological potential, with newly isolated strains of Bacilli and Cyanobacteria. We argue that these two groups of local organisms are currently most promising in terms of developing cell factories, due to their ability to operate in saline conditions, thus reducing the cost of desalination and sterilization. The ability of Cyanobacteria to perform photosynthesis can be fully exploited in this particular environment with one of the highest levels of irradiation on the planet. We highlight the importance of new experimental and in silico methodologies needed to overcome the hurdles of developing efficient cell factories from the Red Sea isolates.

  20. Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity

    KAUST Repository

    Nielsen, Jens

    2017-05-20

    The incentive for developing microbial cell factories for production of fuels and chemicals comes from the ability of microbes to deliver these valuable compounds at a reduced cost and with a smaller environmental impact compared to the analogous chemical synthesis. Another crucial advantage of microbes is their great biological diversity, which offers a much larger “catalog” of molecules than the one obtainable by chemical synthesis. Adaptation to different environments is one of the important drives behind microbial diversity. We argue that the Red Sea, which is a rather unique marine niche, represents a remarkable source of biodiversity that can be geared towards economical and sustainable bioproduction processes in the local area and can be competitive in the international bio-based economy. Recent bioprospecting studies, conducted by the King Abdullah University of Science and Technology, have established important leads on the Red Sea biological potential, with newly isolated strains of Bacilli and Cyanobacteria. We argue that these two groups of local organisms are currently most promising in terms of developing cell factories, due to their ability to operate in saline conditions, thus reducing the cost of desalination and sterilization. The ability of Cyanobacteria to perform photosynthesis can be fully exploited in this particular environment with one of the highest levels of irradiation on the planet. We highlight the importance of new experimental and in silico methodologies needed to overcome the hurdles of developing efficient cell factories from the Red Sea isolates.

  1. Red is Romantic, but Only for Feminine Females: Sexual Dimorphism Moderates Red Effect on Sexual Attraction

    Directory of Open Access Journals (Sweden)

    Fangfang Wen

    2014-10-01

    Full Text Available Previous researchers have documented that the color red enhances one's sexual attraction to the opposite sex. The current study further examined the moderating role of sexual dimorphism in red effects. The results indicated that red enhanced men's sexual attraction to women with more feminine facial characteristics but had no effect on ratings of perceived general attractiveness. Red clothing also had a marginally significant effect on men's sexual attractiveness. In addition, regardless of sexual dimorphism cues, male participants rated women with red as warmer and more competent. The underlying mechanisms of the red effect, the limitations of the current study, and suggestions for future directions are discussed.

  2. Seeing Red: Inside the Science and Politics of the IUCN Red List

    Directory of Open Access Journals (Sweden)

    Lisa M Campbell

    2012-01-01

    Full Text Available The Red List of Threatened Species™ (hereafter Red List is the International Union for the Conservation of Nature′s most recognisable product. The Red List categorises the conservation status of species on a global scale using ′the most objective, scientifically-based information′. Completing Red List assessments is the job of the Species Survival Commission (SSC, and assessments are most often conducted by species specialist groups within the SSC. In the SSC′s Marine Turtle Specialist Group (MTSG, assessments have been contested. Debate is often couched in scientific terms, focused on data availability and the relevance of Red List criteria for marine turtles. However, given the potential conservation impacts of such listings, much more is at stake. In this paper, I analyse an exchange among MTSG members that resulted when the draft Red List assessment for the hawksbill sea turtle was circulated to the group in June 2007. The suggested listing of hawksbill turtles as ′critically endangered′ sparked an email exchange that highlighted not only the scientific, but also the political, economic, and value-based dimensions of the debate. I draw on ideas of co-production and boundary work to analyse both the debate and the MTSG′s response to an associated crisis of legitimacy, and to provide insights into the science-policy interface in conservation.

  3. Planktonic rotifer assemblages of the Danube River at Budapest after the red sludge pollution in Hungary.

    Science.gov (United States)

    Schöll, Károly; Szövényi, Gergely

    2011-08-01

    In the autumn of 2010 an industrial red sludge spill occurred in Hungary. The toxic chemical waste with high alkalinity (pH 13.5) reached the Danube 2 days later, where no change was expected because of the high level of dilution. The planktonic rotifer assemblages of the Danube were investigated at Budapest during the contamination. The median of community density decreased from 500 ind. 100 L(-1) to zero, the species richness from 3.00 to 0.00, Shannon-Weaver diversity from 1.10 to 0.00 after the arrival of the contamination. The rotifer assemblages seemed to have recovered after 3 weeks, but the initial levels of diversity and density were not reached again.

  4. Portunoid crabs as indicators of the Red Sea fauna history and endemism

    Science.gov (United States)

    Spiridonov, Vassily; Türkay, Michael; Brösing, Andreas; Al-Aidaroos, Ali

    2013-04-01

    Peculiar environmental conditions and "turbulent" geological history make the Red Sea a laboratory of evolution and a significant area for understanding adaptation processes. To interpret the results of this basin-scale evolutionary experiment revised inventories of taxonomic diversity of particular groups of marine biota are essential. As one of the first results of the Red Sea Biodiversity Survey (RSBS) in the years 2011 - 2012 along the coast of Saudi Arabia (http://www.redseabiodiversity.org/) and examination of earlier collections and literature a revised species list is provided for the portunoid (swimming) crabs (Crustacea Decapoda Portunoidea). This superfamily is one of the most species rich and has one of the broadest habitat scopes among Brachyura in the global scale. The present assessment results in 54 shallow water species (including 2 recorded for the first time in the Red Sea during RSBS), 2 deep water species and 1 semipelagic species Charybdis smithii. Doubtful literature records of another 7 shallow water species remain unconfirmed. Among reliably recorded shallow water species 58 % belong to widespread Indo-West-Pacific (IWP) species, 13% are the species restricted to the western Indian Ocean, 11 % are endemics of the Arabian region (occurring also either in the western Gulf of Aden or along the eastern coast of the Arabian Peninsula, or in both areas) which are usually vicariant to the widespread IWP species, 11% are taxa that are similar to the species occurring elsewhere in the IWP but have morphological peculiarities and probably deserve a specific or subspecific status. Finally 4% of species (Thalamita murinae and Liocarcinus subcorrugatus) appear to be endemic for the Red Sea and show remarkable disjunctions from most closely related species. Carcinus sp. (probably C. aestuarii) is an introduced (but not established) species in the northern Red Sea. The deep water fauna of the Red Sea is unique because it lives in the warm (20.5-21.5 ° C

  5. Diversity and distribution of eukaryotic microbes in and around a brine pool adjacent to the Thuwal cold seeps in the Red Sea

    KAUST Repository

    Wang, Yong

    2014-02-04

    A hypoxic/suboxic brine pool at a depth of about 850 m was discovered near the Thuwal cold seeps in the Red Sea. Filled with high concentrations of hydrogen sulfide and ammonia, such a brine pool might limit the spread of eukaryotic organisms. Here, we compared the communities of the eukaryotic microbes in a microbial mat, sediments and water samples distributed in 7 sites within and adjacent to the brine pool. Taxonomic classification of the pyrosequenced 18S rRNA amplicon reads showed that fungi highly similar to the species identified along the Arabic coast were almost ubiquitous in the water and sediment samples, supporting their wide distribution in various environments. The microbial mat displayed the highest species diversity and contained grazers and a considerable percentage of unclassified species. Phylogeny-based methods revealed novel lineages representing a majority of the reads from the interface between the sea water and brine pool. Phylogenetic relationships with more reference sequences suggest that the lineages were affiliated with novel Alveolata and Euglenozoa inhabiting the interface where chemosynthetic prokaryotes are highly proliferative due to the strong chemocline and halocline. The brine sediments harbored abundant species highly similar to invertebrate gregarine parasites identified in different oxygen-depleted sediments. Therefore, the present findings support the uniqueness of some microbial eukaryotic groups in this cold seep brine system. 2014 Wang, Zhang, Cao, Shek, Tian, Wong, Batang, Al-suwailem and Qian.

  6. The Effect of Dietary Replacement of Ordinary Rice with Red Yeast Rice on Nutrient Utilization, Enteric Methane Emission and Rumen Archaeal Diversity in Goats.

    Directory of Open Access Journals (Sweden)

    L Z Wang

    Full Text Available Twenty castrated Boer crossbred goats were used in the present study with two treatments to examine the effect of dietary replacement of ordinary rice with red yeast rice on nutrient utilization, enteric methane emission and ruminal archaea structure and composition. Two treatment diets contained (DM basis 70.0% of forage, 21.8% of concentrates and 8.2% of either ordinary rice (control or red yeast rice (RYR. Nutrient utilization was measured and enteric methane emissions were determined in respiration chambers. Results showed that RYR had significantly lower digestibility of N and organic matter compared to control group. However, feeding red yeast rice did not affect N retention as g/d or a proportion of N intake, and reduced heat production as MJ/d or as a proportion of metabolizable energy intake, thus leading to a higher proportion of metabolizable energy intake to be retained in body tissue. RYR also had significantly lower methane emissions either as g/d, or as a proportion of feed intake. Although feeding red yeast rice had no negative effect on any rumen fermentation variables, it decreased serum contents of total cholesterol, triglycerides, HDL-cholesterol and LDL-cholesterol. In the present study, 75616 archaeal sequences were generated and clustered into 2364 Operational Taxonomic Units. At the genus level, the predominant archaea in the rumen of goats was Methanobrevibacter, which was significantly inhibited with the supplementation of red yeast rice. In conclusion, red yeast rice is a potential feed ingredient for mitigation of enteric methane emissions of goats. However, caution should be taken when it is used because it may inhibit the digestibility of some nutrients. Further studies are required to evaluate its potential with different diets and animal species, as well as its effects on animal health and food safety.

  7. Comparative Study of Betacyanin Profile and Antimicrobial Activity of Red Pitahaya (Hylocereus polyrhizus) and Red Spinach (Amaranthus dubius).

    Science.gov (United States)

    Yong, Yi Yi; Dykes, Gary; Lee, Sui Mae; Choo, Wee Sim

    2017-03-01

    Betacyanins are reddish to violet pigments that can be found in red pitahaya (Hylocereus polyrhizus) and red spinach (Amaranthus dubius). This study investigated the impact of sub-fractionation (solvent partitioning) on betacyanin content in both plants. Characterization of betacyanins and evaluation of their antimicrobial activities were also carried out. Betanin was found in both plants. In addition, isobetanin, phyllocactin and hylocerenin were found in red pitahaya whereas amaranthine and decarboxy-amaranthine were found in red spinach. Sub-fractionated red pitahaya and red spinach had 23.5 and 121.5 % more betacyanin content, respectively, than those without sub-fractionation. Sub-fractionation increased the betanin and decarboxy-amaranthine content in red pitahaya and red spinach, respectively. The betacyanin fraction from red spinach (minimum inhibitory concentration [MIC] values: 0.78-3.13 mg/mL) demonstrated a better antimicrobial activity profile than that of red pitahaya (MIC values: 3.13-6.25 mg/mL) against nine Gram-positive bacterial strains. Similarly, the red spinach fraction (MIC values: 1.56-3.13 mg/mL) was more active than the red pitahaya fraction (MIC values: 3.13-6.25 mg/mL) against five Gram-negative bacterial strains. This could be because of a higher amount of betacyanin, particularly amaranthine in the red spinach.

  8. Skin quality in red potatoes

    Science.gov (United States)

    Attractive appearance is a highly desirable characteristic of fresh market red-skinned potatoes. The ideal red potato has a rich, uniform, deep red color. Color fading, netting, browning, and discoloration caused by skinning and disease decrease marketability and may reduce profits to growers and pa...

  9. Diversity analysis and establishment of core subsets of hyacinth bean collection of bangladesh

    International Nuclear Information System (INIS)

    Islam, M.N.

    2014-01-01

    Plant Genetic Resource Centre, Bangladesh Agricultural Research Institute, Gazipur, Bangladesh, maintained 484 hyacinth bean (Lablab purpureusL.) accessions. Distribution of vine colors, flower and pod colors, pod curvature and beak position on pod noticed the presence of substantial variation in the collection. Shannon Diversity Index also revealed high phenotypic diversity in vine and pod characters. High diversities were estimated in quantitative characters of inflorescence and pod characters. Considering a core collection strategy, the accessions were stratified into two groups based on vine colors: green and purple. Maximum genotypes of the collection were of green vine. Each of two subgroups were divided into three groups according to colors of pod i.e., green, white and red. Each group again divided itself into two according to beak position as central and marginal of pod. High diversity was also found regarding pod curvature and beak position on it. Strategically, a core subset consisting of 36 accessions out of 484 accessions was determined. Diversity Indices of different characters of the core accessions were of equal or higher magnitudes to the respective characters of base collection indicating the better representation of core to the original collection. (author)

  10. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    Directory of Open Access Journals (Sweden)

    Maha T. Khalil

    2017-06-01

    Full Text Available Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  11. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea.

    Science.gov (United States)

    Khalil, Maha T; Bouwmeester, Jessica; Berumen, Michael L

    2017-01-01

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3-24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals . All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  12. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    KAUST Repository

    Khalil, Maha T.

    2017-06-06

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  13. First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea

    KAUST Repository

    Antunes, Andre

    2015-10-31

    The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine-seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine-seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies.

  14. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    KAUST Repository

    Khalil, Maha T.; Bouwmeester, Jessica; Berumen, Michael L.

    2017-01-01

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  15. First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea

    KAUST Repository

    Antunes, Andre; Alam, Intikhab; Simoes, Marta; Daniels, Camille Arian; Ferreira, Ari J.S.; Siam, Rania; El-Dorry, Hamza; Bajic, Vladimir B.

    2015-01-01

    The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine-seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine-seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies.

  16. Astrophysics of Red Supergiants

    Science.gov (United States)

    Levesque, Emily M.

    2017-12-01

    'Astrophysics of Red Supergiants' is the first book of its kind devoted to our current knowledge of red supergiant stars, a key evolutionary phase that is critical to our larger understanding of massive stars. It provides a comprehensive overview of the fundamental physical properties of red supergiants, their evolution, and their extragalactic and cosmological applications. It serves as a reference for researchers from a broad range of fields (including stellar astrophysics, supernovae, and high-redshift galaxies) who are interested in red supergiants as extreme stages of stellar evolution, dust producers, supernova progenitors, extragalactic metallicity indicators, members of massive binaries and mergers, or simply as compelling objects in their own right. The book is accessible to a range of experience levels, from graduate students up to senior researchers.

  17. Red - take a closer look.

    Directory of Open Access Journals (Sweden)

    Vanessa L Buechner

    Full Text Available Color research has shown that red is associated with avoidance of threat (e.g., failure or approach of reward (e.g., mating depending on the context in which it is perceived. In the present study we explored one central cognitive process that might be involved in the context dependency of red associations. According to our theory, red is supposed to highlight the relevance (importance of a goal-related stimulus and correspondingly intensifies the perceivers' attentional reaction to it. Angry and happy human compared to non-human facial expressions were used as goal-relevant stimuli. The data indicate that the color red leads to enhanced attentional engagement to angry and happy human facial expressions (compared to neutral ones - the use of non-human facial expressions does not bias attention. The results are discussed with regard to the idea that red induced attentional biases might explain the red-context effects on motivation.

  18. Red Blood Cell Storage Lesion

    Directory of Open Access Journals (Sweden)

    Daryl J. Kor

    2009-10-01

    Full Text Available The past two decades have witnessed increased scrutiny regarding efficacy and risk of the once unquestioned therapy of red blood cell (RBC transfusion. Simultaneously, a variety of changes have been identified within the RBC and storage media during RBC preservation that are correlated with reduced tissue oxygenation and transfusion-associated adverse effects. These alterations are collectively termed the storage lesion and include extensive biochemical, biomechanical, and immunologic changes involving cells of diverse origin. Time-dependent falls is 2,3-diphosphoglycerate, intracellular RBC adenosine triphosphate, and nitric oxide have been shown to impact RBC deformability and delivery of oxygen to the end-organ. The accumulation of biologic response modifiers such as soluble CD40 ligand (sCD40L, lysophosphatidylcholine (lyso-PC, and Regulated on Activation, Normal T-cell Expressed and Secreted (RANTES have been associated with altered recipient immune function as well. This review will address the alterations occurring within the RBC and storage media during RBC preservation and will address the potential clinical consequence thereof.

  19. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

    KAUST Repository

    Alzubaidy, Hanin S.

    2015-11-10

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in ‘metabolism of aromatic compounds’, ‘mobile genetic elements’, ‘potassium metabolism’ and ‘pathways that utilize osmolytes’ in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  20. Allelic diversity of the Plasmodium falciparum erythrocyte membrane protein 1 entails variant-specific red cell surface epitopes.

    Directory of Open Access Journals (Sweden)

    Inès Vigan-Womas

    Full Text Available The clonally variant Plasmodium falciparum PfEMP1 adhesin is a virulence factor and a prime target of humoral immunity. It is encoded by a repertoire of functionally differentiated var genes, which display architectural diversity and allelic polymorphism. Their serological relationship is key to understanding the evolutionary constraints on this gene family and rational vaccine design. Here, we investigated the Palo Alto/VarO and IT4/R29 and 3D7/PF13_003 parasites lines. VarO and R29 form rosettes with uninfected erythrocytes, a phenotype associated with severe malaria. They express an allelic Cys2/group A NTS-DBL1α(1 PfEMP1 domain implicated in rosetting, whose 3D7 ortholog is encoded by PF13_0003. Using these three recombinant NTS-DBL1α(1 domains, we elicited antibodies in mice that were used to develop monovariant cultures by panning selection. The 3D7/PF13_0003 parasites formed rosettes, revealing a correlation between sequence identity and virulence phenotype. The antibodies cross-reacted with the allelic domains in ELISA but only minimally with the Cys4/group B/C PFL1955w NTS-DBL1α. By contrast, they were variant-specific in surface seroreactivity of the monovariant-infected red cells by FACS analysis and in rosette-disruption assays. Thus, while ELISA can differentiate serogroups, surface reactivity assays define the more restrictive serotypes. Irrespective of cumulated exposure to infection, antibodies acquired by humans living in a malaria-endemic area also displayed a variant-specific surface reactivity. Although seroprevalence exceeded 90% for each rosetting line, the kinetics of acquisition of surface-reactive antibodies differed in the younger age groups. These data indicate that humans acquire an antibody repertoire to non-overlapping serotypes within a serogroup, consistent with an antibody-driven diversification pressure at the population level. In addition, the data provide important information for vaccine design, as

  1. Monsoon-driven variability in the southern Red Sea and the exchange with the Indian Ocean

    Science.gov (United States)

    Sofianos, S. S.; Papadopoulos, V. P.; Abualnaja, Y.; Nenes, A.; Hoteit, I.

    2016-02-01

    Although progress has been achieved in describing and understanding the mean state and seasonal cycle of the Red Sea dynamics, their interannual variability is not yet well evaluated and explained. The thermohaline characteristics and the circulation patterns present strong variability at various time scales and are affected by the strong and variable atmospheric forcing and the exchange with the Indian Ocean and the gulfs located at the northern end of the basin. Sea surface temperature time-series, derived from satellite observations, show considerable trends and interannual variations. The spatial variability pattern is very diverse, especially in the north-south direction. The southern part of the Red Sea is significantly influenced by the Indian Monsoon variability that affects the sea surface temperature through the surface fluxes and the circulation patterns. This variability has also a strong impact on the lateral fluxes and the exchange with the Indian Ocean through the strait of Bab el Mandeb. During summer, there is a reversal of the surface flow and an intermediate intrusion of a relatively cold and fresh water mass. This water originates from the Gulf of Aden (the Gulf of Aden Intermediate Water - GAIW), is identified in the southern part of the basin and spreads northward along the eastern Red Sea boundary to approximately 24°N and carried across the Red Sea by basin-size eddies. The GAIW intrusion plays an important role in the heat and freshwater budget of the southern Red Sea, especially in summer, impacting the thermohaline characteristics of the region. It is a permanent feature of the summer exchange flow but it exhibits significant variation from year to year. The intrusion is controlled by a monsoon-driven pressure gradient in the two ends of the strait and thus monsoon interannual variability can laterally impose its signal to the southern Red Sea thermohaline patterns.

  2. Growth and replication of red rain cells at 121°C and their red fluorescence

    Science.gov (United States)

    Gangappa, Rajkumar; Wickramasinghe, Chandra; Wainwright, Milton; Kumar, A. Santhosh; Louis, Godfrey

    2010-09-01

    We have shown that the red cells found in the Red Rain (which fell on Kerala, India, in 2001) survive and grow after incubation for periods of up to two hours at 121°C . Under these conditions daughter cells appear within the original mother cells and the number of cells in the samples increases with length of exposure to 121°C. No such increase in cells occurs at room temperature, suggesting that the increase in daughter cells is brought about by exposure of the Red Rain cells to high temperatures. This is an independent confirmation of results reported earlier by two of the present authors, claiming that the cells can replicate under high pressure at temperatures upto 300°C. The flourescence behaviour of the red cells is shown to be in remarkable correspondence with the extended red emission observed in the Red Rectagle planetary nebula and other galactic and extragalactic dust clouds, suggesting, though not proving an extraterrestrial origin.

  3. Red alder potential in Alaska

    Science.gov (United States)

    Allen Brackley; David Nicholls; Mike Hannan

    2010-01-01

    Over the past several decades, red alder has established itself as a commercially important species in the Pacific Northwest. Once considered a weed species, red alder now commands respect within many markets, including furniture, architectural millwork, and other secondary manufactured products. Although red alder's natural range extends to southeast Alaska, an...

  4. Nonlinear analysis of RED - a comparative study

    International Nuclear Information System (INIS)

    Jiang Kai; Wang Xiaofan; Xi Yugeng

    2004-01-01

    Random Early Detection (RED) is an active queue management (AQM) mechanism for routers on the Internet. In this paper, performance of RED and Adaptive RED are compared from the viewpoint of nonlinear dynamics. In particular, we reveal the relationship between the performance of the network and its nonlinear dynamical behavior. We measure the maximal Lyapunov exponent and Hurst parameter of the average queue length of RED and Adaptive RED, as well as the throughput and packet loss rate of the aggregate traffic on the bottleneck link. Our simulation scenarios include FTP flows and Web flows, one-way and two-way traffic. In most situations, Adaptive RED has smaller maximal Lyapunov exponents, lower Hurst parameters, higher throughput and lower packet loss rate than that of RED. This confirms that Adaptive RED has better performance than RED

  5. Nonlinear analysis of RED - a comparative study

    Energy Technology Data Exchange (ETDEWEB)

    Jiang Kai; Wang Xiaofan E-mail: xfwang@sjtu.edu.cn; Xi Yugeng

    2004-09-01

    Random Early Detection (RED) is an active queue management (AQM) mechanism for routers on the Internet. In this paper, performance of RED and Adaptive RED are compared from the viewpoint of nonlinear dynamics. In particular, we reveal the relationship between the performance of the network and its nonlinear dynamical behavior. We measure the maximal Lyapunov exponent and Hurst parameter of the average queue length of RED and Adaptive RED, as well as the throughput and packet loss rate of the aggregate traffic on the bottleneck link. Our simulation scenarios include FTP flows and Web flows, one-way and two-way traffic. In most situations, Adaptive RED has smaller maximal Lyapunov exponents, lower Hurst parameters, higher throughput and lower packet loss rate than that of RED. This confirms that Adaptive RED has better performance than RED.

  6. A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

    KAUST Repository

    DiBattista, Joseph; Roberts, May B.; Bouwmeester, Jessica; Bowen, Brian W.; Coker, Darren James; Lozano-Corté s, Diego; Howard Choat, J.; Gaither, Michelle R.; Hobbs, Jean-Paul A.; Khalil, Maha T.; Kochzius, Marc; Myers, Robert F.; Paulay, Gustav; Robitzch, Vanessa S.N.; Saenz Agudelo, Pablo; Salas, Eva; Sinclair-Taylor, Tane; Toonen, Robert J.; Westneat, Mark W.; Williams, Suzanne T.; Berumen, Michael L.

    2015-01-01

    The Red Sea biota appears resilient to major environmental fluctuations and is characterized by high rates of endemism with variable degrees of incursion into the Gulf of Aden. The nearby Omani and Arabian Gulfs also have variable environments and high levels of endemism, but these are not consistently distinct across taxa. The presence of physical barriers does not appear to explain species distributions, which are more likely determined by ecological plasticity and genetic diversity.

  7. Increasing Cropping System Diversity Balances Productivity, Profitability and Environmental Health

    Science.gov (United States)

    Davis, Adam S.; Hill, Jason D.; Chase, Craig A.; Johanns, Ann M.; Liebman, Matt

    2012-01-01

    Balancing productivity, profitability, and environmental health is a key challenge for agricultural sustainability. Most crop production systems in the United States are characterized by low species and management diversity, high use of fossil energy and agrichemicals, and large negative impacts on the environment. We hypothesized that cropping system diversification would promote ecosystem services that would supplement, and eventually displace, synthetic external inputs used to maintain crop productivity. To test this, we conducted a field study from 2003–2011 in Iowa that included three contrasting systems varying in length of crop sequence and inputs. We compared a conventionally managed 2-yr rotation (maize-soybean) that received fertilizers and herbicides at rates comparable to those used on nearby farms with two more diverse cropping systems: a 3-yr rotation (maize-soybean-small grain + red clover) and a 4-yr rotation (maize-soybean-small grain + alfalfa-alfalfa) managed with lower synthetic N fertilizer and herbicide inputs and periodic applications of cattle manure. Grain yields, mass of harvested products, and profit in the more diverse systems were similar to, or greater than, those in the conventional system, despite reductions of agrichemical inputs. Weeds were suppressed effectively in all systems, but freshwater toxicity of the more diverse systems was two orders of magnitude lower than in the conventional system. Results of our study indicate that more diverse cropping systems can use small amounts of synthetic agrichemical inputs as powerful tools with which to tune, rather than drive, agroecosystem performance, while meeting or exceeding the performance of less diverse systems. PMID:23071739

  8. Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

    KAUST Repository

    Lee, O. O.

    2012-08-03

    Microbial associations with corals are common and are most likely symbiotic, although their diversity and relationships with environmental factors and host species remain unclear. In this study, we adopted a 16S rRNA gene tag-pyrosequencing technique to investigate the bacterial communities associated with three stony Scleractinea and two soft Octocorallia corals from three locations in the Red Sea. Our results revealed highly diverse bacterial communities in the Red Sea corals, with more than 600 ribotypes detected and up to 1,000 species estimated from a single coral species. Altogether, 21 bacterial phyla were recovered from the corals, of which Gammaproteobacteria was the most dominant group, and Chloroflexi, Chlamydiae, and the candidate phylum WS3 were reported in corals for the first time. The associated bacterial communities varied greatly with location, where environmental conditions differed significantly. Corals from disturbed areas appeared to share more similar bacterial communities, but larger variations in community structures were observed between different coral species from pristine waters. Ordination methods identified salinity and depth as the most influential parameters affecting the abundance of Vibrio, Pseudoalteromonas, Serratia, Stenotrophomonas, Pseudomonas, and Achromobacter in the corals. On the other hand, bacteria such as Chloracidobacterium and Endozoicomonas were more sensitive to the coral species, suggesting that the host species type may be influential in the associated bacterial community, as well. The combined influences of the coral host and environmental factors on the associated microbial communities are discussed. This study represents the first comparative study using tag-pyrosequencing technology to investigate the bacterial communities in Red Sea corals.

  9. Biodiversity patterns of plankton assemblages at the extremes of the Red Sea

    KAUST Repository

    Pearman, John K.

    2016-01-07

    The diversity of microbial plankton has received limited attention in the main basin of the Red Sea. This study investigates changes in the community composition and structure of prokaryotes and eukaryotes at the extremes of the Red Sea along cross-shelf gradients and between the surface and deep chlorophyll maximum. Using molecular methods to target both the 16S and 18S rRNA genes, it was observed that the dominant prokaryotic classes were Acidimicrobiia, Alphaproteobacteria and Cyanobacteria, regardless of the region and depth. The eukaryotes Syndiniophyceae and Dinophyceae between them dominated in the north, with Bacillariophyceae and Mamiellophyceae more prominent in the southern region. Significant differences were observed for prokaryotes and eukaryotes for region, depth and distance from shore. Similarly, it was noticed that communities became less similar with increasing distance from the shore. Canonical correspondence analysis at the class level showed that Mamiellophyceae and Bacillariophyceae correlated with increased nutrients and chlorophyll a found in the southern region, which is influenced by the input of Gulf of Aden Intermediate Water.

  10. Biodiversity patterns of plankton assemblages at the extremes of the Red Sea

    KAUST Repository

    Pearman, John K.; Kurten, Saskia; Yellepeddi, Sarma B.; Jones, Burton; Carvalho, Susana

    2016-01-01

    The diversity of microbial plankton has received limited attention in the main basin of the Red Sea. This study investigates changes in the community composition and structure of prokaryotes and eukaryotes at the extremes of the Red Sea along cross-shelf gradients and between the surface and deep chlorophyll maximum. Using molecular methods to target both the 16S and 18S rRNA genes, it was observed that the dominant prokaryotic classes were Acidimicrobiia, Alphaproteobacteria and Cyanobacteria, regardless of the region and depth. The eukaryotes Syndiniophyceae and Dinophyceae between them dominated in the north, with Bacillariophyceae and Mamiellophyceae more prominent in the southern region. Significant differences were observed for prokaryotes and eukaryotes for region, depth and distance from shore. Similarly, it was noticed that communities became less similar with increasing distance from the shore. Canonical correspondence analysis at the class level showed that Mamiellophyceae and Bacillariophyceae correlated with increased nutrients and chlorophyll a found in the southern region, which is influenced by the input of Gulf of Aden Intermediate Water.

  11. 21 CFR 640.10 - Red Blood Cells.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 7 2010-04-01 2010-04-01 false Red Blood Cells. 640.10 Section 640.10 Food and... ADDITIONAL STANDARDS FOR HUMAN BLOOD AND BLOOD PRODUCTS Red Blood Cells § 640.10 Red Blood Cells. The proper name of this product shall be Red Blood Cells. The product is defined as red blood cells remaining...

  12. EFSA NDA Panel (EFSA Panel on Dietetic Products, Nutrition and Allergies), 2013. Scientific Opinion on the substantiation of a health claim related to a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf chard, red Swiss chard, golden Swiss chard

    DEFF Research Database (Denmark)

    Tetens, Inge

    related to a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf chard, red Swiss chard, golden Swiss chard and white Swiss chard and maintenance of normal blood cholesterol concentration. The food that is the subject of the health claim, a combination of red...... spinach (Spinacia oleracea L.), green spinach (Spinacia oleracea L.), red chicory (Cichorium intybus L.), green chicory (Cichorium intybus L.), green leaf chard (Beta vulgaris L. var. cicla), red leaf chard (Beta vulgaris L. var. cicla), red Swiss chard (Beta vulgaris L. var. cicla), golden Swiss chard...... for the scientific substantiation of the claim were provided by the applicant. The Panel concludes that a cause and effect relationship has not been established between consumption of a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf chard, red Swiss chard, golden...

  13. Actinomycetes from red sea sponges: Sources for chemical and phylogenetic diversity

    KAUST Repository

    Abdelmohsen, Usama Ramadan

    2014-05-12

    The diversity of actinomycetes associated with marine sponges collected off Fsar Reef (Saudi Arabia) was investigated in the present study. Forty-seven actinomycetes were cultivated and phylogenetically identified based on 16S rRNA gene sequencing and were assigned to 10 different actinomycete genera. Eight putatively novel species belonging to genera Kocuria, Mycobacterium, Nocardia, and Rhodococcus were identified based on sequence similarity values below 98.2% to other 16S rRNA gene sequences available in the NCBI database. PCR-based screening for biosynthetic genes including type I and type II polyketide synthases (PKS-I, PKS-II) as well as nonribosomal peptide synthetases (NRPS) showed that 20 actinomycete isolates encoded each at least one type of biosynthetic gene. The organic extracts of nine isolates displayed bioactivity against at least one of the test pathogens, which were Gram-positive and Gram-negative bacteria, fungi, human parasites, as well as in a West Nile Virus protease enzymatic assay. These results emphasize that marine sponges are a prolific resource for novel bioactive actinomycetes with potential for drug discovery. 2014 by the authors; licensee MDPI.

  14. Actinomycetes from red sea sponges: Sources for chemical and phylogenetic diversity

    KAUST Repository

    Abdelmohsen, Usama Ramadan; Yang, Chen; Horn, Hannes; Hajjar, Dina A.; Ravasi, Timothy; Hentschel, Ute

    2014-01-01

    The diversity of actinomycetes associated with marine sponges collected off Fsar Reef (Saudi Arabia) was investigated in the present study. Forty-seven actinomycetes were cultivated and phylogenetically identified based on 16S rRNA gene sequencing and were assigned to 10 different actinomycete genera. Eight putatively novel species belonging to genera Kocuria, Mycobacterium, Nocardia, and Rhodococcus were identified based on sequence similarity values below 98.2% to other 16S rRNA gene sequences available in the NCBI database. PCR-based screening for biosynthetic genes including type I and type II polyketide synthases (PKS-I, PKS-II) as well as nonribosomal peptide synthetases (NRPS) showed that 20 actinomycete isolates encoded each at least one type of biosynthetic gene. The organic extracts of nine isolates displayed bioactivity against at least one of the test pathogens, which were Gram-positive and Gram-negative bacteria, fungi, human parasites, as well as in a West Nile Virus protease enzymatic assay. These results emphasize that marine sponges are a prolific resource for novel bioactive actinomycetes with potential for drug discovery. 2014 by the authors; licensee MDPI.

  15. Large-eddy simulation of a bluff-body stabilised turbulent premixed flame using the transported flame surface density approach

    Science.gov (United States)

    Lee, Chin Yik; Cant, Stewart

    2017-07-01

    A premixed propane-air flame stabilised on a triangular bluff body in a model jet-engine afterburner configuration is investigated using large-eddy simulation (LES). The reaction rate source term for turbulent premixed combustion is closed using the transported flame surface density (TFSD) model. In this approach, there is no need to assume local equilibrium between the generation and destruction of subgrid FSD, as commonly done in simple algebraic closure models. Instead, the key processes that create and destroy FSD are accounted for explicitly. This allows the model to capture large-scale unsteady flame propagation in the presence of combustion instabilities, or in situations where the flame encounters progressive wrinkling with time. In this study, comprehensive validation of the numerical method is carried out. For the non-reacting flow, good agreement for both the time-averaged and root-mean-square velocity fields are obtained, and the Karman type vortex shedding behaviour seen in the experiment is well represented. For the reacting flow, two mesh configurations are used to investigate the sensitivity of the LES results to the numerical resolution. Profiles for the velocity and temperature fields exhibit good agreement with the experimental data for both the coarse and dense mesh. This demonstrates the capability of LES coupled with the TFSD approach in representing the highly unsteady premixed combustion observed in this configuration. The instantaneous flow pattern and turbulent flame behaviour are discussed, and the differences between the non-reacting and reacting flow are described through visualisation of vortical structures and their interaction with the flame. Lastly, the generation and destruction of FSD are evaluated by examining the individual terms in the FSD transport equation. Localised regions where straining, curvature and propagation are each dominant are observed, highlighting the importance of non-equilibrium effects of FSD generation and

  16. NMR water-proton spin-lattice relaxation time of human red blood cells and red blood cell suspensions

    International Nuclear Information System (INIS)

    Sullivan, S.G.; Rosenthal, J.S.; Winston, A.; Stern, A.

    1988-01-01

    NMR water-proton spin-lattice relaxation times were studied as probes of water structure in human red blood cells and red blood cell suspensions. Normal saline had a relaxation time of about 3000 ms while packed red blood cells had a relaxation time of about 500 ms. The relaxation time of a red blood cell suspension at 50% hematocrit was about 750 ms showing that surface charges and polar groups of the red cell membrane effectively structure extracellular water. Incubation of red cells in hypotonic saline increases relaxation time whereas hypertonic saline decreases relaxation time. Relaxation times varied independently of mean corpuscular volume and mean corpuscular hemoglobin concentration in a sample population. Studies with lysates and resealed membrane ghosts show that hemoglobin is very effective in lowering water-proton relaxation time whereas resealed membrane ghosts in the absence of hemoglobin are less effective than intact red cells. 9 refs.; 3 figs.; 1 table

  17. Latitudinal variation in the symbiotic dinoflagellateSymbiodiniumof the common reef zoantharianPalythoa tuberculosaon the Saudi Arabian coast of the Red Sea

    KAUST Repository

    Reimer, James D.

    2016-08-08

    Aim The Red Sea presents an ideal setting to explore the variability of Symbiodinium over environmental, latitudinal and geographical gradients. We used sequences from two molecular markers to examine genetic diversity of Symbiodinium associated with the widely distributed zoantharian Palythoa tuberculosa in the northern and central Red Sea. Location Northern and central Red Sea. Methods Specimens (n = 329) were collected from 15 locations. Sequence data from nuclear ribosomal ITS2 (n = 269) and chloroplast minicircle psbAncr (n = 173) were phylogenetically analysed (maximum likelihood, neighbour joining), and Symbiodinium types identified for each P. tuberculosa colony. To establish whether environment was a strong predictor of Symbiodinium psbAncr lineage, SST, chlorophyll-a, salinity, and depth data were fit into a multinomial logistic regression using the package VGAM in the R statistical environment. Results Based on ITS2 and psbAncr results, P. tuberculosa colonies were shown to be in symbioses with Symbiodinium clade C (n = 172) and clade D (n = 1). Within clade C, four psbAncr lineages were observed; closely related lineages designated Pt-1-a and Pt-1-b, and closely related lineages Pt-3-a and Pt-3-b. By location, Pt-1-a dominated the sites within the Gulf of Aqaba (c. 86%, 37/43 colonies). At the entrance to the Gulf of Aqaba, Pt-3-a dominated (c. 88%, 15/17), while the more southern remaining sites in the Red Sea were dominated by Pt-3-b (c. 78%, 89/113). Main conclusions Multinomial logistic regression analyses established that predictions based on the combination of temperature, chlorophyll-a and salinity accurately reflected symbiont distributions in the central and northern Red Sea. Palythoa tuberculosa host Pt-1-a in the coldest region, the Gulf of Aqaba (annual average SST = 24.5–25.0 °C), while immediately to the south Pt-3-a dominates (SST = 26.0–26.5 °C), with warmest southern sites dominated by Pt-3-b (SST > 26.5 °C). The Gulf of Aqaba is

  18. Report of biological investigations at the Los Medanos Waste Isolation Pilot Plant (WIPP) area of New Mexico during FY 1978

    International Nuclear Information System (INIS)

    Best, T.L.; Neuhauser, S.

    1980-03-01

    The US Department of Energy is considering the construction of a Waste Isolation Pilot Plant (WIPP) in Eddy County, NM. This location is approximately 40 km east of Carlsbad, NM. Biological studies during FY 1978 were concentrated within a 5-mi radius of drill hole ERDA 9. Additional study areas have been established at other sites in the vicinity, e.g., the Gnome site, the salt lakes and several stations along the Pecos River southward from Carlsbad, NM, to the dam at Red Bluff Reservoir in Texas. The precise locations of all study areas are presented and their biology discussed

  19. Report of biological investigations at the Los Medanos Waste Isolation Pilot Plant (WIPP) area of New Mexico during FY 1978

    Energy Technology Data Exchange (ETDEWEB)

    Best, T.L.; Neuhauser, S. (eds.)

    1980-03-01

    The US Department of Energy is considering the construction of a Waste Isolation Pilot Plant (WIPP) in Eddy County, NM. This location is approximately 40 km east of Carlsbad, NM. Biological studies during FY 1978 were concentrated within a 5-mi radius of drill hole ERDA 9. Additional study areas have been established at other sites in the vicinity, e.g., the Gnome site, the salt lakes and several stations along the Pecos River southward from Carlsbad, NM, to the dam at Red Bluff Reservoir in Texas. The precise locations of all study areas are presented and their biology discussed.

  20. The acute stress response of red porgy, Pagrus pagrus, kept on a red or white background

    NARCIS (Netherlands)

    Salm, A.L. van der; Pavlidis, M; Flik, G.; Wendelaar Bonga, S.E.

    2005-01-01

    The skin colour of red porgy, Pagrus pagrus, can be modified by exposure to different background colours. Red and white background colours brighten the dark skin colour that develops under common culture conditions in red porgy. To assess whether skin colour is also modified by aquaculture related

  1. Antiproliferative effects of fresh and thermal processed green and red cultivars of curly kale (Brassica oleracea L. convar. acephala var. sabellica).

    Science.gov (United States)

    Olsen, Helle; Grimmer, Stine; Aaby, Kjersti; Saha, Shikha; Borge, Grethe Iren A

    2012-08-01

    Brassica vegetables contain a diverse range of phytochemicals with biological properties such as antioxidant and anticancer activity. However, knowledge about how biological activities are affected by processing is lacking. A green cultivar and a red cultivar of curly kale were evaluated for water/methanol-soluble phytochemicals before and after processing involving blanching, freeze storage, and boil-in-bag heat treatment. In both kale cultivars, processing resulted in a significant decrease of total phenolics, antioxidant capacity, and content and distribution of flavonols, anthocyanins, hydroxycinnamic acids, glucosinolates, and vitamin C. Interestingly, the red curly kale cultivar had a higher capacity to withstand thermal loss of phytochemicals. The extracts of both green and red curly kale inhibited the cell proliferation of three human colon cancer cell lines (Caco-2, HT-29, and HCT 116). However, extracts from fresh plant material had a significantly stronger antiproliferative effect than extracts from processed plant material.

  2. EFSA NDA Panel (EFSA Panel on Dietetic Products, Nutrition and Allergies), 2013. Scientific Opinion on the substantiation of a health claim related to a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf chard, red Swiss chard, golden Swiss chard

    DEFF Research Database (Denmark)

    Tetens, Inge

    related to a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf chard, red Swiss chard, golden Swiss chard and white Swiss chard and protection of blood lipids from oxidative damage. The food that is the subject of the health claim, a combination...... of the following frozen vegetables: red spinach (Spinacia oleracea L.), green spinach (Spinacia oleracea L.), red chicory (Cichorium intybus L.), green chicory (Cichorium intybus L.), green leaf chard (Beta vulgaris L. var. cicla), red leaf chard (Beta vulgaris L. var. cicla), red Swiss chard (Beta vulgaris L. var...... conclusions could be drawn for the scientific substantiation of the claim were provided by the applicant. The Panel concludes that a cause and effect relationship has not been established between consumption of a combination of red spinach, green spinach, red chicory, green chicory, green leaf chard, red leaf...

  3. Identity, Diversity and Diversity Management

    DEFF Research Database (Denmark)

    Holck, Lotte; Muhr, Sara Louise; Villeseche, Florence

    2016-01-01

    – The work can encourage policy makers, diversity and HR managers to question their own practices and assumptions leading to more theoretical informed diversity management practices. Originality/value – The theoretical connections between identity and diversity literature have so far not been reviewed......The purpose of this paper is to examine the relationship between the identity and diversity literatures and discuss how a better understanding of the theoretical connections between the two informs both diversity research and diversity management practices. Design/methodology/approach – Literature...... and limitations – is crucial for successful diversity management research and practice. Research limitations/implications – The authors argue for a better understanding of differences, overlaps and limits of different identity perspectives, and for a stronger engagement with practice. Practical implications...

  4. Why be red listed? Threatened Myriapoda species in Brazil with implications for their conservation.

    Science.gov (United States)

    Karam-Gemael, Manoela; Izzo, Thiago Junqueira; Chagas, Amazonas

    2018-01-01

    The biodiversity crisis we live in, marked by high extinction rates, requires well-planned conservation efforts. To overcome this issue, red lists of threatened species are recognized as the main objective approach for evaluating the conservation status of species and therefore guiding conservation priorities. This work focuses on the Myriapoda (Chilopoda and Diplopoda) species listed in the Brazilian red list of fauna to enable discussion of the practical implications of red lists for conservation. Almost all myriapods assessed are endemic to Brazil (99 %) and 73 % are known from subterranean habitats only. Despite of 33 % being recorded from protected areas (PAs), downgrading, degazettement or downsizing of PAs and intense and unregulated ecotourism represent great threats. The PAs network in Brazil tends to fail in conserving myriapod species. The number of data deficient species (42 %) states the need of investing in ecological and taxonomic studies about the group, in order to fill in important knowledge gaps in species assessments nationally and globally. In this work we show that there is a lack of communication between national and global agencies concerning red lists, which results in a significant loss for science and for conservation. Despite investing in national and state red lists, individual countries must take the final step of submitting its data to IUCN global database, as significant international funding is available for IUCN red listed species conservation. Being one of the most diverse countries in the world, and facing the biggest cuts ever on national science funding, losing these important funding opportunities is a huge loss for Brazilian biodiversity conservation and for science. This study raises awareness on subterranean habitats conservation, due to its high endemism and fragility. Since the first edition of the Brazilian Red List in 1968, centipedes are now included for the first time, and millipedes for the second time. The presence

  5. Effect of Preservative Treatment on Fungal Colonization of Teak, Redwood, and Western Red Cedar

    DEFF Research Database (Denmark)

    Cabrera Orozco, Yohanna; Freitag, F.; Morrell, Jeffrey J.

    Fungal flora present in preservative treated samples or non-treated samples from sapwood and heartwood of teak, western red cedar, redwood, and southern yellow pine was assessed after 6 to 18 months of exposure near Hilo, Hawaii. The objectives were to compare fungal composition and diversity...... between treated and non-treated samples, and to examine the use of molecular techniques for assessing fungal community structure in a ground-proximity-test located in Hilo, Hawaii. Fungi were recovered in culture after 6, 12, or 18 months, yielding 178 unique DNA sequences that represented 85 taxa...

  6. Next generation red teaming

    CERN Document Server

    Dalziel, Henry

    2015-01-01

    Red Teaming is can be described as a type of wargaming.In private business, penetration testers audit and test organization security, often in a secretive setting. The entire point of the Red Team is to see how weak or otherwise the organization's security posture is. This course is particularly suited to CISO's and CTO's that need to learn how to build a successful Red Team, as well as budding cyber security professionals who would like to learn more about the world of information security. Teaches readers how to dentify systemic security issues based on the analysis of vulnerability and con

  7. Diversity in the Toll-Like Receptor Genes of the African Penguin (Spheniscus demersus).

    Science.gov (United States)

    Dalton, Desiré Lee; Vermaak, Elaine; Roelofse, Marli; Kotze, Antoinette

    2016-01-01

    The African penguin, Spheniscus demersus, is listed as Endangered by the IUCN Red List of Threatened Species due to the drastic reduction in population numbers over the last 20 years. To date, the only studies on immunogenetic variation in penguins have been conducted on the major histocompatibility complex (MHC) genes. It was shown in humans that up to half of the genetic variability in immune responses to pathogens are located in non-MHC genes. Toll-like receptors (TLRs) are now increasingly being studied in a variety of taxa as a broader approach to determine functional genetic diversity. In this study, we confirm low genetic diversity in the innate immune region of African penguins similar to that observed in New Zealand robin that has undergone several severe population bottlenecks. Single nucleotide polymorphism (SNP) diversity across TLRs varied between ex situ and in situ penguins with the number of non-synonymous alterations in ex situ populations (n = 14) being reduced in comparison to in situ populations (n = 16). Maintaining adaptive diversity is of vital importance in the assurance populations as these animals may potentially be used in the future for re-introductions. Therefore, this study provides essential data on immune gene diversity in penguins and will assist in providing an additional monitoring tool for African penguin in the wild, as well as to monitor diversity in ex situ populations and to ensure that diversity found in the in situ populations are captured in the assurance populations.

  8. Tests of two convection theories for red giant and red supergiant envelopes

    Science.gov (United States)

    Stothers, Richard B.; Chin, Chao-Wen

    1995-01-01

    Two theories of stellar envelope convection are considered here in the context of red giants and red supergiants of intermediate to high mass: Boehm-Vitense's standard mixing-length theory (MLT) and Canuto & Mazzitelli's new theory incorporating the full spectrum of turbulence (FST). Both theories assume incompressible convection. Two formulations of the convective mixing length are also evaluated: l proportional to the local pressure scale height (H(sub P)) and l proportional to the distance from the upper boundary of the convection zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red phase of core helium burning. Since the theoretically predicted effective temperatures for cool stars are known to be sensitive to the assigned value of the mixing length, this quantity has been individually calibrated for each evolutionary sequence. The calibration is done in a composite Hertzsprung-Russell diagram for the red giant and red supergiant members of well-observed Galactic open clusters. The MLT model requires the constant of proportionality for the convective mixing length to vary by a small but statistically significant amount with stellar mass, whereas the FST model succeeds in all cases with the mixing lenghth simply set equal to z. The structure of the deep stellar interior, however, remains very nearly unaffected by the choices of convection theory and mixing lenghth. Inside the convective envelope itself, a density inversion always occurs, but is somewhat smaller for the convectively more efficient MLT model. On physical grounds the FST model is preferable, and seems to alleviate the problem of finding the proper mixing length.

  9. Absence of genetic differentiation in the coral Pocillopora verrucosa along environmental gradients of the Saudi Arabian Red Sea

    Directory of Open Access Journals (Sweden)

    Vanessa eRobitzch

    2015-02-01

    Full Text Available The Red Sea is the world’s northernmost tropical sea. The 2,000 km long, but narrow basin creates distinct environmental conditions along its latitudinal spread. The Red Sea displays a pronounced salinity gradient from 41 to 37 PSU (north to south with an opposing temperature gradient from 21-27°C in the north to 27-33.8°C in the south. The Red Sea further displays a decreasing nutrient gradient from south to north that can also influence underwater light fields due to higher phytoplankton content and turbidity. Despite this strong variation in temperature, salinity, nutrients, and light conditions, the Red Sea supports large and diverse coral reef ecosystems along its nearly entire coastline. Only few studies have targeted whether these prevailing gradients affect genetic connectivity of reef organisms in the Red Sea. In this study, we sampled the abundant reef-building coral Pocillopora verrucosa from ten reefs along a latitudinal gradient in the Red Sea covering an area of more than 850 km. We used nine Pocillopora microsatellite markers to assess the underlying population genetic structure and effective population size. To assure the exclusion of cryptic species, all analyzed specimens were chosen from a single mitochondrial lineage. Despite large distances between sampled regions covering pronounced, but smooth temperature and salinity gradients, no significant genetic population structure was found. Rather, our data indicate panmixia and considerable gene flow among regions. The absence of population subdivision driven by environmental factors and over large geographic distances suggests efficient larval dispersal and successful settlement of recruits from a wide range of reef sites. It also advocates, broadcast spawning as the main reproductive strategy of Pocillopora verrucosa in the Red Sea as reflected by the absence of clones in sampled colonies. These factors might explain the success of Pocillopora species throughout the Indo

  10. Absence of genetic differentiation in the coral Pocillopora verrucosa along environmental gradients of the Saudi Arabian Red Sea

    KAUST Repository

    Robitzch, Vanessa S.N.; Banguera Hinestroza, Eulalia; Sawall, Yvonne; Al-Sofyani, Abdulmohsin; Voolstra, Christian R.

    2015-01-01

    The Red Sea is the world's northernmost tropical sea. The 2000 km long, but narrow basin creates distinct environmental conditions along its latitudinal spread. The Red Sea displays a pronounced salinity gradient from 41 to 37 PSU (north to south) with an opposing temperature gradient from 21 to 27°C in the north to 27–33.8°C in the south. The Red Sea further displays a decreasing nutrient gradient from south to north that can also influence underwater light fields due to higher phytoplankton content and turbidity. Despite this strong variation in temperature, salinity, nutrients, and light conditions, the Red Sea supports large and diverse coral reef ecosystems along its nearly entire coastline. Only few studies have targeted whether these prevailing gradients affect genetic connectivity of reef organisms in the Red Sea. In this study, we sampled the abundant reef-building coral Pocillopora verrucosa from 10 reefs along a latitudinal gradient in the Red Sea covering an area of more than 850 km. We used nine Pocillopora microsatellite markers to assess the underlying population genetic structure and effective population size. To assure the exclusion of cryptic species, all analyzed specimens were chosen from a single mitochondrial lineage. Despite large distances between sampled regions covering pronounced, but smooth temperature and salinity gradients, no significant genetic population structure was found. Rather, our data indicate panmixia and considerable gene flow among regions. The absence of population subdivision driven by environmental factors and over large geographic distances suggests efficient larval dispersal and successful settlement of recruits from a wide range of reef sites. It also advocates, broadcast spawning as the main reproductive strategy of Pocillopora verrucosa in the Red Sea as reflected by the absence of clones in sampled colonies. These factors might explain the success of Pocillopora species throughout the Indo-Pacific and Arabian

  11. Absence of genetic differentiation in the coral Pocillopora verrucosa along environmental gradients of the Saudi Arabian Red Sea

    KAUST Repository

    Robitzch, Vanessa S.N.

    2015-02-11

    The Red Sea is the world\\'s northernmost tropical sea. The 2000 km long, but narrow basin creates distinct environmental conditions along its latitudinal spread. The Red Sea displays a pronounced salinity gradient from 41 to 37 PSU (north to south) with an opposing temperature gradient from 21 to 27°C in the north to 27–33.8°C in the south. The Red Sea further displays a decreasing nutrient gradient from south to north that can also influence underwater light fields due to higher phytoplankton content and turbidity. Despite this strong variation in temperature, salinity, nutrients, and light conditions, the Red Sea supports large and diverse coral reef ecosystems along its nearly entire coastline. Only few studies have targeted whether these prevailing gradients affect genetic connectivity of reef organisms in the Red Sea. In this study, we sampled the abundant reef-building coral Pocillopora verrucosa from 10 reefs along a latitudinal gradient in the Red Sea covering an area of more than 850 km. We used nine Pocillopora microsatellite markers to assess the underlying population genetic structure and effective population size. To assure the exclusion of cryptic species, all analyzed specimens were chosen from a single mitochondrial lineage. Despite large distances between sampled regions covering pronounced, but smooth temperature and salinity gradients, no significant genetic population structure was found. Rather, our data indicate panmixia and considerable gene flow among regions. The absence of population subdivision driven by environmental factors and over large geographic distances suggests efficient larval dispersal and successful settlement of recruits from a wide range of reef sites. It also advocates, broadcast spawning as the main reproductive strategy of Pocillopora verrucosa in the Red Sea as reflected by the absence of clones in sampled colonies. These factors might explain the success of Pocillopora species throughout the Indo-Pacific and

  12. The IOC consensus statement: beyond the Female Athlete Triad--Relative Energy Deficiency in Sport (RED-S).

    Science.gov (United States)

    Mountjoy, Margo; Sundgot-Borgen, Jorunn; Burke, Louise; Carter, Susan; Constantini, Naama; Lebrun, Constance; Meyer, Nanna; Sherman, Roberta; Steffen, Kathrin; Budgett, Richard; Ljungqvist, Arne

    2014-04-01

    Protecting the health of the athlete is a goal of the International Olympic Committee (IOC). The IOC convened an expert panel to update the 2005 IOC Consensus Statement on the Female Athlete Triad. This Consensus Statement replaces the previous and provides guidelines to guide risk assessment, treatment and return-to-play decisions. The IOC expert working group introduces a broader, more comprehensive term for the condition previously known as 'Female Athlete Triad'. The term 'Relative Energy Deficiency in Sport' (RED-S), points to the complexity involved and the fact that male athletes are also affected. The syndrome of RED-S refers to impaired physiological function including, but not limited to, metabolic rate, menstrual function, bone health, immunity, protein synthesis, cardiovascular health caused by relative energy deficiency. The cause of this syndrome is energy deficiency relative to the balance between dietary energy intake and energy expenditure required for health and activities of daily living, growth and sporting activities. Psychological consequences can either precede RED-S or be the result of RED-S. The clinical phenomenon is not a 'triad' of the three entities of energy availability, menstrual function and bone health, but rather a syndrome that affects many aspects of physiological function, health and athletic performance. This Consensus Statement also recommends practical clinical models for the management of affected athletes. The 'Sport Risk Assessment and Return to Play Model' categorises the syndrome into three groups and translates these classifications into clinical recommendations.

  13. Silvical characteristics of red maple (Acer rubrum)

    Science.gov (United States)

    Russell J. Hutnik; Harry W. Yawney

    1961-01-01

    Red maple (Acer rubrum L.) is also known as Carolina red maple, scarlet maple, soft maple, swamp maple, water maple, and white maple. Taxonomists recognize several varieties of red maple. The most common is Drummond red maple (Acer rubrum var. drummondii (Hook, & Arn.) Sarg.).

  14. Synergy of VSWIR and LiDAR for Ecosystem Structure, Biomass, and Canopy Diversity

    Science.gov (United States)

    Cook, Bruce D.; Asner, Gregory P.

    2010-01-01

    This slide presentation reviews the use of Visible ShortWave InfraRed (VSWIR) Imaging Spectrometer and LiDAR to study ecosystem structure, biomass and canopy diversity. It is shown that the biophysical data from LiDAR and biochemical information from hyperspectral remote sensing provides complementary data for: (1) describing spatial patterns of vegetation and biodiversity, (2) characterizing relationships between ecosystem form and function, and (3) detecting natural and human induced change that affects the biogeochemical cycles.

  15. First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.

    Science.gov (United States)

    Antunes, André; Alam, Intikhab; Simões, Marta Filipa; Daniels, Camille; Ferreira, Ari J S; Siam, Rania; El-Dorry, Hamza; Bajic, Vladimir B

    2015-10-01

    The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine-seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine-seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies. Copyright © 2015 The Authors. Production and hosting by Elsevier Ltd.. All rights reserved.

  16. The Water Supply of El Morro National Monument

    Science.gov (United States)

    West, Samuel Wilson; Baldwin, Helene Louise

    1964-01-01

    In the land of enchantment, between Gallup and Grants, N. Mex., near the Zuni Mountains, a huge sandstone bluff rises abruptly 200 feet above the plain. The Spaniards called it 'El Morro,' which means 'the headland' or 'bluff.' Around it are other mesas and canyons and stands of pinon and ponderosa pine. Other great rocks are nearby, but none are as popular as El Morro, and none have been as important to the traveler. For at El Morro there is water. In that country, water is scarce and precious. In the old days, travelers from Santa Fe would tell each other about the pool of clear, refreshing water at the base of the huge rock. This is the story of the great bluff, its water supply, and the rocks around it. In the late summer of 1849, an American lieutenant of the Topographical Engineers, James H. Simpson, accompanied infantry and artillery troops on a reconnaissance march from Santa Fe into the Navajo Country. On September 18, at the urging of one Mr. Lewis, an Indian trader, Lieutenant Simpson left the main party in order to see 'half an acre of inscriptions' upon a huge rock (fig. 1) . Although somewhat dubious, the Lieutenant had allowed himself to be persuaded by Lewis that the trip was worthwhile. Taking with him an artist named R. H. Kern, another man by the name of Bird, and Mr. Lewis as guide, he set off through miles of desert country, filled with huge red and white sandstone rocks, 'some of them looking like steamboats, and others presenting very much the appearance of facades of heavy Egyptian architecture'.

  17. Red fluorescence of dental plaque in children -A cross-sectional study.

    Science.gov (United States)

    Volgenant, Catherine M C; Zaura, Egija; Brandt, Bernd W; Buijs, Mark J; Tellez, Marisol; Malik, Gayatri; Ismail, Amid I; Ten Cate, Jacob M; van der Veen, Monique H

    2017-03-01

    The relation between the presence of red fluorescent plaque and the caries status in children was studied. In addition, the microbial composition of dental plaque from sites with red fluorescent plaque (RFP) and from sites with no red fluorescent plaque (NFP) was assessed. Fluorescence photographs were taken from fifty children (6-14 years old) with overnight plaque. Full-mouth caries scores (ICDAS II) were obtained. The composition of a saliva sample and two plaque samples (RFP and NFP) was assessed using 16S rDNA sequencing. At the site level, no clinically relevant correlations were found between the presence of RFP and the caries status. At the subject level, a weak correlation was found between RFP and the caries status when non-cavitated lesions were included (r s =0.37, p=0.007). The microbial composition of RFP differed significantly from NFP. RFP had more anaerobes and more Gram-negative bacterial taxa. The most discriminative operational taxonomic units (OTUs) for RFP were Corynebacterium, Leptotrichia, Porphyromonas and Selenomonas, while the most discriminative OTUs for NFP were Neisseria, Actinomyces, Streptococcus and Rothia. There were no clinical relevant correlations in this cross-sectional study between the presence of RFP and (early) caries lesions. There were differences in the composition of these phenotypically different plaque samples: RFP contained more Gram-negative, anaerobic taxa and was more diverse than NFP. The study outcomes provide more insight in the possibilities to use plaque fluorescence in oral health risk assessments. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Molecular genetic diversity and maternal origin of Chinese black-bone chicken breeds.

    Science.gov (United States)

    Zhu, W Q; Li, H F; Wang, J Y; Shu, J T; Zhu, C H; Song, W T; Song, C; Ji, G G; Liu, H X

    2014-04-29

    Chinese black-bone chickens are valued for the medicinal properties of their meat in traditional Chinese medicine. We investigated the genetic diversity and systematic evolution of Chinese black-bone chicken breeds. We sequenced the DNA of 520 bp of the mitochondrial cyt b gene of nine Chinese black-bone chicken breeds, including Silky chicken, Jinhu black-bone chicken, Jiangshan black-bone chicken, Yugan black-bone chicken, Wumeng black-bone chicken, Muchuan black-bone chicken, Xingwen black-bone chicken, Dehua black-bone chicken, and Yanjin black-bone chicken. We found 13 haplotypes. Haplotype and nucleotide diversity of the nine black-bone chicken breeds ranged from 0 to 0.78571 and 0.00081 to 0.00399, respectively. Genetic diversity was the richest in Jinhu black-bone chickens and the lowest in Yanjin black-bone chickens. Analysis of phylogenetic trees for all birds constructed based on hyplotypes indicated that the maternal origin of black-bone chickens is predominantly from three subspecies of red jungle fowl. These results provide basic data useful for protection of black-bone chickens and help determine the origin of domestic chickens.

  19. Red Sirius

    Energy Technology Data Exchange (ETDEWEB)

    Martynov, D Ya

    1976-01-01

    A hypothesis is proposed explaining the assumption that Sirius changed its colour from red in the second century to pale blue in the tenth century A.D. The hypothesis is based on the possibility of transformation of a Sirius satellite (Sirius B) from a red giant in the past to a white dwarf in the present. Such a transformation would have been accompanied by an explosion of Sirius B, which is clearly visible from the Earth. The fact that the increase in Sirius brightness by 4-5 units is not reflected in historical chronicles is attributed to the degradation of sciences in Europe in 4-10 centuries.

  20. RED Alert – Early warning or detection of global re-emerging infectious disease (RED)

    Energy Technology Data Exchange (ETDEWEB)

    Deshpande, Alina [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-07-13

    This is the PDF of a presentation for a webinar given by Los Alamos National Laboratory (LANL) on the early warning or detection of global re-emerging infectious disease (RED). First, there is an overview of LANL biosurveillance tools. Then, information is given about RED Alert. Next, a demonstration is given of a component prototype. RED Alert is an analysis tool that can provide early warning or detection of the re-emergence of an infectious disease at the global level, but through a local lens.

  1. Latitudinal variation in the symbiotic dinoflagellateSymbiodiniumof the common reef zoantharianPalythoa tuberculosaon the Saudi Arabian coast of the Red Sea

    KAUST Repository

    Reimer, James D.; Herrera Sarrias, Marcela; Gatins, Remy; Roberts, May B.; Parkinson, John E.; Berumen, Michael L.

    2016-01-01

    Main conclusions Multinomial logistic regression analyses established that predictions based on the combination of temperature, chlorophyll-a and salinity accurately reflected symbiont distributions in the central and northern Red Sea. Palythoa tuberculosa host Pt-1-a in the coldest region, the Gulf of Aqaba (annual average SST = 24.5–25.0 °C), while immediately to the south Pt-3-a dominates (SST = 26.0–26.5 °C), with warmest southern sites dominated by Pt-3-b (SST > 26.5 °C). The Gulf of Aqaba is a unique environment, and more research on Symbiodinium outside the Gulf is required to understand symbiont diversity patterns within the Red Sea.

  2. Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea

    KAUST Repository

    Roberts, May B.

    2015-11-20

    Coral reef communities between 26.8°N and 18.6°N latitude in the Saudi Arabian Red Sea were surveyed to provide baseline data and an assessment of fine-scale biogeography of communities in this region. Forty reefs along 1100 km of coastline were surveyed using depth-stratified visual transects of fish and benthic communities. Fish abundance and benthic cover data were analyzed using multivariate approaches to investigate whether coral reef communities differed with latitude. A total of 215 fish species and 90 benthic categories were recorded on the surveys. There were no significant differences among locations in fish abundance, species richness, or among several diversity indices. Despite known environmental gradients within the Red Sea, the communities remained surprisingly similar. The communities do, however, exhibit subtle changes across this span of reefs that likely reflect the constrained distributions of several species of reef fish and benthic fauna.

  3. Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea

    KAUST Repository

    Roberts, May B.; Jones, Geoffrey P.; McCormick, Mark I.; Munday, Philip L.; Neale, Stephen; Thorrold, Simon; Robitzch, Vanessa S.N.; Berumen, Michael L.

    2015-01-01

    Coral reef communities between 26.8°N and 18.6°N latitude in the Saudi Arabian Red Sea were surveyed to provide baseline data and an assessment of fine-scale biogeography of communities in this region. Forty reefs along 1100 km of coastline were surveyed using depth-stratified visual transects of fish and benthic communities. Fish abundance and benthic cover data were analyzed using multivariate approaches to investigate whether coral reef communities differed with latitude. A total of 215 fish species and 90 benthic categories were recorded on the surveys. There were no significant differences among locations in fish abundance, species richness, or among several diversity indices. Despite known environmental gradients within the Red Sea, the communities remained surprisingly similar. The communities do, however, exhibit subtle changes across this span of reefs that likely reflect the constrained distributions of several species of reef fish and benthic fauna.

  4. Calcinea of the Red Sea: providing a DNA barcode inventory with description of four new species

    KAUST Repository

    Voigt, Oliver; Erpenbeck, Dirk; Gonzá lez-Pech, Rá ul A.; Al-Aidaroos, Ali M.; Berumen, Michael L.; Wö rheide, Gert

    2017-01-01

    The Red Sea is a biodiversity hotspot with a considerable percentage of endemic species for many marine animals. Little is known about the diversity and distribution of calcareous sponges (Porifera, Class Calcarea) in this marginal sea. Here we analysed calcareous sponges of the subclass Calcinea that were collected between 2009 and 2013 at 20 localities in the Red Sea, ranging from the Gulf of Aqaba in the north to the Farasan Islands in the south, to document the species of this region. For this, we applied an integrative approach: We defined OTUs based on the analyses of a recently suggested standard DNA marker, the LSU C-region. The analysis was complemented with a second marker, the internal transcribed spacer, for selected specimens. Ten OTUs were identified. Specimens of each OTU were morphologically examined with spicule preparations and histological sections. Accordingly, our ten OTUs represent ten species, which cover taxonomically a broad range of the subclass. By combining molecular and morphological data, we describe four new species from the Red Sea: Soleneiscus hamatus sp. nov., Ernstia arabica sp. nov., Clathrina rotundata sp. nov., and Clathrina rowi sp. nov.. One additional small specimen was closely related to “Clathrina” adusta, but due to the small size it could not be properly analysed morphologically. By providing the DNA sequences for the morphologically documented specimens in the Sponge Barcoding Database (www.spongebarcoding.org) we facilitate future DNA-assisted species identification of Red Sea Calcinea, even for small or incomplete samples, which would be insufficient for morphological identification. Application of DNA barcode methods in the subclass will help to further investigate the distribution of Calcinea in the Red Sea and adjacent regions.

  5. Calcinea of the Red Sea: providing a DNA barcode inventory with description of four new species

    KAUST Repository

    Voigt, Oliver

    2017-03-29

    The Red Sea is a biodiversity hotspot with a considerable percentage of endemic species for many marine animals. Little is known about the diversity and distribution of calcareous sponges (Porifera, Class Calcarea) in this marginal sea. Here we analysed calcareous sponges of the subclass Calcinea that were collected between 2009 and 2013 at 20 localities in the Red Sea, ranging from the Gulf of Aqaba in the north to the Farasan Islands in the south, to document the species of this region. For this, we applied an integrative approach: We defined OTUs based on the analyses of a recently suggested standard DNA marker, the LSU C-region. The analysis was complemented with a second marker, the internal transcribed spacer, for selected specimens. Ten OTUs were identified. Specimens of each OTU were morphologically examined with spicule preparations and histological sections. Accordingly, our ten OTUs represent ten species, which cover taxonomically a broad range of the subclass. By combining molecular and morphological data, we describe four new species from the Red Sea: Soleneiscus hamatus sp. nov., Ernstia arabica sp. nov., Clathrina rotundata sp. nov., and Clathrina rowi sp. nov.. One additional small specimen was closely related to “Clathrina” adusta, but due to the small size it could not be properly analysed morphologically. By providing the DNA sequences for the morphologically documented specimens in the Sponge Barcoding Database (www.spongebarcoding.org) we facilitate future DNA-assisted species identification of Red Sea Calcinea, even for small or incomplete samples, which would be insufficient for morphological identification. Application of DNA barcode methods in the subclass will help to further investigate the distribution of Calcinea in the Red Sea and adjacent regions.

  6. The effects of sex, age, season and habitat on diet of the red fox Vulpes vulpes in northeastern Poland.

    Science.gov (United States)

    Kidawa, Dorota; Kowalczyk, Rafał

    2011-07-01

    The diet of the red fox Vulpes vulpes was investigated in five regions of northeastern Poland by stomach content analysis of 224 foxes collected from hunters. The red fox is expected to show the opportunistic feeding habits. Our study showed that foxes preyed mainly on wild prey, with strong domination of Microtus rodents, regardless of sex, age, month and habitat. Voles Microtus spp. were found in 73% of stomachs and constituted 47% of food volume consumed. Other food items were ungulate carrion (27% of volume), other mammals (11%), birds (9%), and plant material (4%). Sex- and age-specific differences in dietary diversity were found. Adult males and juvenile foxes had larger food niche breadths than adult females and their diets highly overlapped. Proportion of Microtus voles increased from autumn to late winter. Significant habitat differences between studied regions were found. There was a tendency among foxes to decrease consumption of voles with increasing percentage of forest cover. Based on our findings, red foxes in northeastern Poland can be recognized as a generalist predators, consuming easily accessible and abundant prey. However, high percentage of voles consumed regardless of age, sex, month, or habitats may indicate red fox specialization in preying on Microtus rodents.

  7. The influence of habitat structure on genetic differentiation in red fox populations in north-eastern Poland.

    Science.gov (United States)

    Mullins, Jacinta; McDevitt, Allan D; Kowalczyk, Rafał; Ruczyńska, Iwona; Górny, Marcin; Wójcik, Jan M

    2014-01-01

    The red fox ( Vulpes vulpes ) has the widest global distribution among terrestrial carnivore species, occupying most of the Northern Hemisphere in its native range. Because it carries diseases that can be transmitted to humans and domestic animals, it is important to gather information about their movements and dispersal in their natural habitat but it is difficult to do so at a broad scale with trapping and telemetry. In this study, we have described the genetic diversity and structure of red fox populations in six areas of north-eastern Poland, based on samples collected from 2002-2003. We tested 22 microsatellite loci isolated from the dog and the red fox genome to select a panel of nine polymorphic loci suitable for this study. Genetic differentiation between the six studied populations was low to moderate and analysis in Structure revealed a panmictic population in the region. Spatial autocorrelation among all individuals showed a pattern of decreasing relatedness with increasing distance and this was not significantly negative until 93 km, indicating a pattern of isolation-by-distance over a large area. However, there was no correlation between genetic distance and either Euclidean distance or least-cost path distance at the population level. There was a significant relationship between genetic distance and the proportion of large forests and water along the Euclidean distances. These types of habitats may influence dispersal paths taken by red foxes, which is useful information in terms of wildlife disease management.

  8. Antibacterial Compounds from Red Seaweeds (Rhodophyta

    Directory of Open Access Journals (Sweden)

    Noer Kasanah

    2015-07-01

    Full Text Available Seaweeds produce great variety of metabolites benefit for human. Red seaweeds (Rhodophyta are well known as producer of phycocolloids such agar, agarose, carragenan and great variety of secondary metabolites. This review discusses the red algal secondary metabolites with antibacterial activity. The chemical constituents of red algae are steroid, terpenoid, acetogenin and dominated by halogenated compounds mainly brominated compounds. Novel compounds with intriguing skeleton are also reported such as bromophycolides and neurymenolides. In summary, red seaweeds are potential sources for antibacterial agents and can serve as lead in synthesis of new natural medicines.

  9. "Congo" red: out of Africa?

    Science.gov (United States)

    Steensma, D P

    2001-02-01

    Congo red is the essential histologic stain for demonstrating the presence of amyloidosis in fixed tissues. To the best of my knowledge, nothing has been written about why the stain is named "Congo." To understand the etymology and history of the Congo red histologic stain. Primary sources were consulted extensively, including 19th-century corporate documents, newspapers, legal briefs, patents, memoirs, and scientific papers. Sources were obtained from multiple university libraries and German corporate archives. To Europeans in 1885, the word Congo evoked exotic images of far-off central Africa known as The Dark Continent. The African Congo was also a political flashpoint during the Age of Colonialism. "Congo" red was introduced in Berlin in 1885 as the first of the economically lucrative direct textile dyes. A patent on Congo red was filed by the AGFA Corporation of Berlin 3 weeks after the conclusion of the well-publicized Berlin West Africa Conference. During these important diplomatic talks, German Chancellor Otto von Bismarck presided over a discussion of free trade issues in the Congo River basin. A challenge to AGFA's Congo red patent led to a precedent-setting decision in intellectual property law. The Congo red stain was named "Congo" for marketing purposes by a German textile dyestuff company in 1885, reflecting geopolitical current events of that time.

  10. Psoroptes mites infestation in a captive Burmese Red Serow (Capricornis sumatraensis subspecies rubidus) of Indo-Burma bio-diversity hotspot.

    Science.gov (United States)

    Shah, Nirali; Borpojari, Dhrubajyoti; Sarma, Kalyan; Ali, M Ayub; Saikia, Basanta; Bayan, Hitesh; Ahmed, Fazal Ali; Das, Gunjan

    2018-06-01

    An 8 years old male Burmese Red Serow ( Capricornis sumatraensis sub species rubidus ) from Aizawl Zoological Park was presented to the Teaching Veterinary Clinical Complex. An exploratory skin scraping revealed existence of nymphal as well as adult stages of mites of the Psoroptes spp. which were not associated with any overt lesions typical to mite infestation such as pruritus, erythema or scaling of the epidermis. The mites were identified as per their morphology, size and shape. Haemato-biochemical analysis revealed alteration of certain haematological and biochemical parameters. The red blood corpuscles were found to have anucleate cells with mild to absent central pallor. The absolute counts showed neutrophilic leucocytosis with mild monocytosis and lymphocytosis. Eosinophilic count was towards the higher side, indicating that the infestation was mild. The serum calcium, albumin, triglyceride, urea nitrogen (BUN) were found to be lower than normal, whereas serum ALT, AST, LDH, ALP and serum amylase were higher than the established reference indices. Due to lack of haemato-biochemical reference values specific to captive Serow, emphasis was given in this report to establish baseline data for this species.

  11. White dwarf-red dwarf binaries in the Galaxy

    NARCIS (Netherlands)

    Besselaar, E.J.M. van den

    2007-01-01

    This PhD thesis shows several studies on white dwarf - red dwarf binaries. White dwarfs are the end products of most stars and red dwarfs are normal hydrogen burning low-mass stars. White dwarf - red dwarf binaries are both blue (white dwarf) and red (red dwarf). Together with the fact that they are

  12. Making Space for Red Tide: Discolored Water and the Early Twentieth Century Bayscape of Japanese Pearl Cultivation.

    Science.gov (United States)

    Ericson, Kjell

    2017-05-01

    "Red tide" has become a familiar shorthand for unusual changes in the color of ocean waters. It is intimately related both to blooms of creatures like dinoflagellates and to the devastating effects they pose to coastal fisheries. This essay tracks the early twentieth century emergence of discolored water as an aquacultural problem, known in Japan as akashio, and its trans-oceanic transformation into the terms and practices of "red tide" in the post-World War II United States. For Japan's "Pearl King" Mikimoto Kōkichi and his contacts in diverse marine scientific communities, the years-long cycle of guarding and cultivating a pearl oyster went together with the ascription of moral qualities to tiny creatures that posed a threat to farmed bayscapes of pearl monoculture. As akashio, discolored water went from curiosity to marine livestock pest, one that at times left dead pearl oysters in its wake. Red tide arose from the sustained study of the mechanisms by which changes in the biological and chemical composition of seawater might become deadly to exclusively-claimed shellfish along Japanese coastlines, but came to be seen as a way to understand aquatic manifestations of harm in other parts of the littoral world.

  13. Decadal Stability of Red Sea Mangroves

    KAUST Repository

    Almahasheer, Hanan; Aljowair, Abdulaziz; Duarte, Carlos M.; Irigoien, Xabier

    2015-01-01

    Across the Earth, mangroves play an important role in coastal protection, both as nurseries and carbon sinks. However, due to various human and environmental impacts, the coverage of mangroves is declining on a global scale. The Red Sea is in the northern-most area of the distribution range of mangroves. Little is known about the surface covered by mangroves at this northern limit or about the changes experienced by Red Sea mangroves. We sought to study changes in the coverage of Red Sea mangroves by using multi-temporal Landsat data (1972, 2000 and 2013). Interestingly, our results show that there has been no decline in mangrove stands in the Red Sea but rather a slight increase. The area covered by mangroves is about 69 Km2 along the African shore and 51 Km2 along the Arabian Peninsula shore. From 1972 to 2013, the area covered by mangroves increased by about 0.29% y-1. We conclude that the trend exhibited by Red Sea mangroves departs from the general global decline of mangroves. Along the Red Sea, mangroves expanded by 12% over the 41 years from 1972 to 2013. Losses to Red Sea mangroves, mostly due to coastal development, have been compensated by afforestation projects.

  14. Decadal Stability of Red Sea Mangroves

    KAUST Repository

    Almahasheer, Hanan

    2015-12-15

    Across the Earth, mangroves play an important role in coastal protection, both as nurseries and carbon sinks. However, due to various human and environmental impacts, the coverage of mangroves is declining on a global scale. The Red Sea is in the northern-most area of the distribution range of mangroves. Little is known about the surface covered by mangroves at this northern limit or about the changes experienced by Red Sea mangroves. We sought to study changes in the coverage of Red Sea mangroves by using multi-temporal Landsat data (1972, 2000 and 2013). Interestingly, our results show that there has been no decline in mangrove stands in the Red Sea but rather a slight increase. The area covered by mangroves is about 69 Km2 along the African shore and 51 Km2 along the Arabian Peninsula shore. From 1972 to 2013, the area covered by mangroves increased by about 0.29% y-1. We conclude that the trend exhibited by Red Sea mangroves departs from the general global decline of mangroves. Along the Red Sea, mangroves expanded by 12% over the 41 years from 1972 to 2013. Losses to Red Sea mangroves, mostly due to coastal development, have been compensated by afforestation projects.

  15. Distinct features of intraspecific and intrapopulation variability of the skull size in the red fox.

    Science.gov (United States)

    Gos'kov, A M; Bol'shakov, V N; Korytin, N S

    2017-05-01

    The range of chronographic variability of the average size of the skull in the red fox (data collected by the authors) from a compact area in the Middle Urals has been assessed for a 30-year period, and the results obtained have been compared with the published data on the geographical variability within the vast species range. The range of changes of the average dimensions of the skull over time spanned almost the entire range of geographical variability. Therefore, the problem of search for factors that determine the morphological diversity arises.

  16. From red giants to planetary nebulae

    International Nuclear Information System (INIS)

    Kwok, S.

    1982-01-01

    The transition from red giants to planetary nebulae is studied by comparing the spectral characteristics of red giant envelopes and planetary nebulae. Observational and theoretical evidence both suggest that remnants of red giant envelopes may still be present in planetary nebula systems and should have significant effects on their formation. The dynamical effects of the interaction of stellar winds from central stars of planetary nebulae with the remnant red giant envelopes are evaluated and the mechanism found to be capable of producing the observed masses and momenta of planetary nebulae. The observed mass-radii relation of planetary nebulae may also be best explained by the interacting winds model. The possibility that red giant mass loss, and therefore the production of planetary nebulae, is different between Population I and II systems is also discussed

  17. Analyses between Reproductive Behavior, Genetic Diversity and Pythium Responsiveness in Zingiber spp. Reveal an Adaptive Significance for Hemiclonality

    Science.gov (United States)

    Thomas, Geethu E.; Geetha, Kiran A.; Augustine, Lesly; Mamiyil, Sabu; Thomas, George

    2016-01-01

    Mode of reproduction is generally considered to have long-range evolutionary implications on population survival. Because sexual reproduction produces genetically diverse genotypes, this mode of reproduction is predicted to positively influence the success potential of offspring in evolutionary arms race with parasites (Red queen) whereas, without segregation and recombination, the obligate asexual multiplication may push a species into extinction due to the steady accumulation of deleterious mutations (Muller’s ratchet). However, the extent of linearity between reproductive strategies, genetic diversity and population fitness, and the contributions of different breeding strategies to population fitness are yet to be understood clearly. Genus Zingiber belonging to the pan-tropic family Zingiberaceae represents a good system to study contributions of different breeding behavior on genetic diversity and population fitness, as this genus comprises species with contrasting breeding systems. In this study, we analyzed breeding behavior, amplified fragment length polymorphism diversity and response to the soft-rot pathogen Pythium aphanidermatum in 18 natural populations of three wild Zingiber spp.: Z. neesanum, Z. nimmonii, and Z. zerumbet, together with the obligately asexual cultivated congener, ginger (Z. officinale). Ginger showed an exceptionally narrow genetic base, and adding to this, all the tested cultivars were uniformly susceptible to soft-rot. Concordant with the postulates of Muller’s ratchet, the background selection may be continuously pushing ginger into the ancestral state, rendering it inefficient in host-pathogen coevolution. Z. neesanum and Z. nimmonii populations were sexual and genetically diverse; however, contrary to Red Queen expectations, the populations were highly susceptible to soft-rot. Z. zerumbet showed a hemiclonal breeding behavior. The populations inhabiting forest understory were large and continuous, sexual and genetically

  18. red - an R package to facilitate species red list assessments according to the IUCN criteria

    Directory of Open Access Journals (Sweden)

    Pedro Cardoso

    2017-10-01

    Full Text Available The International Union for the Conservation of Nature Red List is the most useful database of species that are at risk of extinction worldwide, as it relies on a number of objective criteria and is now widely adopted. The R package red – IUCN Redlisting Tools - performs a number of spatial analyses based on either observed occurrences or estimated ranges. Functions include calculating Extent of Occurrence (EOO, Area of Occupancy (AOO, mapping species ranges, species distribution modelling using climate and land cover and calculating the Red List Index for groups of species. The package allows the calculation of confidence limits for all measures. Spatial data of species occurrences, environmental or land cover variables can be either given by the user or automatically extracted from several online databases. It outputs geographical range, elevation and country values, maps in several formats and vectorial data for visualization in Google Earth. Several examples are shown demonstrating the usefulness of the different methods. The red package constitutes an open platform for further development of new tools to facilitate red list assessments.

  19. red - an R package to facilitate species red list assessments according to the IUCN criteria.

    Science.gov (United States)

    Cardoso, Pedro

    2017-01-01

    The International Union for the Conservation of Nature Red List is the most useful database of species that are at risk of extinction worldwide, as it relies on a number of objective criteria and is now widely adopted. The R package red - IUCN Redlisting Tools - performs a number of spatial analyses based on either observed occurrences or estimated ranges. Functions include calculating Extent of Occurrence (EOO), Area of Occupancy (AOO), mapping species ranges, species distribution modelling using climate and land cover and calculating the Red List Index for groups of species. The package allows the calculation of confidence limits for all measures. Spatial data of species occurrences, environmental or land cover variables can be either given by the user or automatically extracted from several online databases. It outputs geographical range, elevation and country values, maps in several formats and vectorial data for visualization in Google Earth. Several examples are shown demonstrating the usefulness of the different methods. The red package constitutes an open platform for further development of new tools to facilitate red list assessments.

  20. Habitability of planets around red dwarf stars.

    Science.gov (United States)

    Heath, M J; Doyle, L R; Joshi, M M; Haberle, R M

    1999-08-01

    Recent models indicate that relatively moderate climates could exist on Earth-sized planets in synchronous rotation around red dwarf stars. Investigation of the global water cycle, availability of photosynthetically active radiation in red dwarf sunlight, and the biological implications of stellar flares, which can be frequent for red dwarfs, suggests that higher plant habitability of red dwarf planets may be possible.

  1. Habitat quality and recruitment success of cui-ui in the Truckee River downstream of Marble Bluff Dam, Pyramid Lake, Nevada

    Science.gov (United States)

    Scoppettone, G. Gary; Rissler, Peter H.; Salgado, J. Antonio; Harry, Beverly

    2013-01-01

    We compared cui-ui (Chasmistes cujus) recruitment from two reaches of the Truckee River with histories of severe erosional downcutting caused by a decline in Pyramid Lake surface elevation. In 1975, Marble Bluff Dam (MBD) was constructed 5 kilometers upstream of the extant mouth of the Truckee River to stabilize the upstream reach of the river; the downstream reach of the river remained unstable and consequently unsuitable for cui-ui recruitment. By the early 2000s, there was a decrease in the Truckee River’s slope from MBD to Pyramid Lake after a series of wet years in the 1990s. This was followed by changes in river morphology and erosion abatement. These changes led to the question as to cui-ui recruitment potential in the Truckee River downstream of MBD. In 2012, more than 7,000 cui-ui spawners were passed upstream of MBD, although an indeterminate number of cui-ui spawned downstream of MBD. In this study, we compared cui-ui recruitment upstream and downstream of MBD during a Truckee River low-flow year (2012). Cui-ui larvae emigration to Pyramid Lake began earlier and ended later downstream of MBD. A greater number of cui-ui larvae was produced downstream of MBD than upstream. This also was true for native Tahoe sucker (Catostomus tahoensis) and Lahontan redside (Richardsonius egregius). The improved Truckee River stability downstream of MBD and concomitant cui-ui recruitment success is attributed to a rise in Pyramid Lake's surface elevation. A decline in lake elevation may lead to a shift in stream morphology and substrate composition to the detriment of cui-ui reproductive success as well as the reproductive success of other native fishes.

  2. 44 CFR 63.17 - Procedures and data requirements for imminent collapse certifications by States.

    Science.gov (United States)

    2010-10-01

    ... forth. (i) Top edge of bluff (cliff top). (ii) Top edge of escarpment on an eroding dune (i.e., a nearly vertical erosional cut at the seaward face of the dune). The normal high tide should be near the toe of the... high bluff or dune and not accessible from the water side, the top edge of the bluff or dune will be...

  3. Biodiversity patterns of plankton assemblages at the extremes of the Red Sea.

    Science.gov (United States)

    Pearman, J K; Kürten, S; Sarma, Y V B; Jones, B H; Carvalho, S

    2016-03-01

    The diversity of microbial plankton has received limited attention in the main basin of the Red Sea. This study investigates changes in the community composition and structure of prokaryotes and eukaryotes at the extremes of the Red Sea along cross-shelf gradients and between the surface and deep chlorophyll maximum. Using molecular methods to target both the 16S and 18S rRNA genes, it was observed that the dominant prokaryotic classes were Acidimicrobiia, Alphaproteobacteria and Cyanobacteria, regardless of the region and depth. The eukaryotes Syndiniophyceae and Dinophyceae between them dominated in the north, with Bacillariophyceae and Mamiellophyceae more prominent in the southern region. Significant differences were observed for prokaryotes and eukaryotes for region, depth and distance from shore. Similarly, it was noticed that communities became less similar with increasing distance from the shore. Canonical correspondence analysis at the class level showed that Mamiellophyceae and Bacillariophyceae correlated with increased nutrients and chlorophyll a found in the southern region, which is influenced by the input of Gulf of Aden Intermediate Water. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  4. Red alder: a state of knowledge.

    Science.gov (United States)

    Robert L. Deal; Constance A. Harrington

    2006-01-01

    In March 23-25, 2005, an international symposium on red alder was held at the University of Washington Center for Urban Horticulture in Seattle, WA. The symposium was entitled "Red alder: A State of Knowledge" and brought together regional experts to critically examine the economic, ecological and social values of red alder. The primary goal of the symposium...

  5. Infra Red 3D Computer Mouse

    DEFF Research Database (Denmark)

    Harbo, Anders La-Cour; Stoustrup, Jakob

    2000-01-01

    The infra red 3D mouse is a three dimensional input device to a computer. It works by determining the position of an arbitrary object (like a hand) by emitting infra red signals from a number of locations and measuring the reflected intensities. To maximize stability, robustness, and use of bandw......The infra red 3D mouse is a three dimensional input device to a computer. It works by determining the position of an arbitrary object (like a hand) by emitting infra red signals from a number of locations and measuring the reflected intensities. To maximize stability, robustness, and use...

  6. Molecular characterization and multi-locus genotypes of Enterocytozoon bieneusi from captive red kangaroos (Macropus Rufus in Jiangsu province, China.

    Directory of Open Access Journals (Sweden)

    Zhijun Zhong

    Full Text Available Enterocytozoon bieneusi is the most common pathogen of microsporidian species infecting humans worldwide. Although E. bieneusi has been found in a variety of animal hosts, information on the presence of E. bieneusi in captive kangaroos in China is limited. The present study was aimed at determining the occurrence and genetic diversity of E. bieneusi in captive kangaroos. A total of 61 fecal specimens (38 from red kangaroos and 23 from grey kangaroos were collected from Nanjing Hongshan Forest Zoo and Hongshan Kangaroo Breeding Research Base, Jiangsu province, China. Using the nested PCR amplification ITS gene of rRNA of E. bieneusi, totally 23.0% (14/61 of tested samples were PCR-positive with three genotypes (i.e. one known genotype, CHK1, and two novel genotypes, CSK1 and CSK2. Multi-locus sequence typing using three microsatellites (MS1, MS3, and MS7 and one minisatellite (MS4 revealed one, five, two, and one types at these four loci, respectively. In phylogenetic analysis, the two genotypes, CHK1 and CSK1, were clustered into a new group of unknown zoonotic potential, and the novel genotype CSK2 was clustered into a separate clade with PtEb and PtEbIX. To date, this is the first report on the presence of E. bieneusi in captive red kangaroos in Jiangsu province, China. Furthermore, a high degree of genetic diversity was observed in the E. bieneusi genotype and seven MLGs (MLG1-7 were found in red kangaroos. Our findings suggest that infected kangaroo may act as potential reservoirs of E. bieneusi and be source to transmit infections to other animal.

  7. Nourishment of perched sand dunes and the issue of erosion control in the Great Lakes

    Science.gov (United States)

    Marsh, William M.

    1990-09-01

    Although limited in coverage, perched sand dunes situated on high coastal bluffs are considered the most prized of Great Lakes dunes. Grand Sable Dunes on Lake Superior and Sleeping Bear Dunes on Lake Michigan are featured attractions of national lakeshores under National Park Service management. The source of sand for perched dunes is the high bluff along their lakeward edge. As onshore wind crosses the bluff, flow is accelerated upslope, resulting in greatly elevated levels of wind stress over the slope brow. On barren, sandy bluffs, wind erosion is concentrated in the brow zone, and for the Grand Sable Bluff, it averaged 1 m3/yr per linear meter along the highest sections for the period 1973 1983. This mechanism accounts for about 6,500 m3 of sand nourishment to the dunefield annually and clearly has been the predominant mechanism for the long-term development of the dunefield. However, wind erosion and dune nourishment are possible only where the bluff is denuded of plant cover by mass movements and related processes induced by wave erosion. In the Great Lakes, wave erosion and bluff retreat vary with lake levels; the nourishment of perched dunes is favored by high levels. Lake levels have been relatively high for the past 50 years, and shore erosion has become a major environmental issue leading property owners and politicians to support lake-level regulation. Trimming high water levels could reduce geomorphic activity on high bluffs and affect dune nourishment rates. Locally, nourishment also may be influenced by sediment accumulation associated with harbor protection facilities and by planting programs aimed at stabilizing dunes.

  8. Mechanisms of immune red cell destruction, and red cell compatibility testing

    International Nuclear Information System (INIS)

    Garratty, G.

    1983-01-01

    The immune destruction of red cells can occur as a complement-mediated intravascular process, or extravascularly, where the red cells are destroyed by macrophages following interaction with cell-bound IgG1, IgG3, and/or C3b. Many of the factors that affect this in vivo destruction are not taken into account during in vitro pretransfusion compatibility testing. At present, even by use of more elaborate tests, it is difficult to accurately predict the fate of a transfused unit of blood. By using some simple information, such as antibody specificity and thermal range, it is sometimes possible to predict the outcome of transfusing a unit of blood that is incompatible in vitro. At other times it may be necessary to utilize 51 Cr-labeled red cells to determine the risk of transfusing such units. Because of the paucity of reported clinical correlations, macrophage/monocyte monolayer assays are of little practical value at present

  9. Distribution of Prochlorococcus Ecotypes in the Red Sea Basin Based on Analyses of rpoC1 Sequences

    KAUST Repository

    Shibl, Ahmed A.; Haroon, Mohamed; Ngugi, David; Thompson, Luke R.; Stingl, Ulrich

    2016-01-01

    The marine picocyanobacteria Prochlorococcus represent a significant fraction of the global pelagic bacterioplankton community. Specifically, in the surface waters of the Red Sea, they account for around 91% of the phylum Cyanobacteria. Previous work suggested a widespread presence of high-light (HL)-adapted ecotypes in the Red Sea with the occurrence of low-light (LL)-adapted ecotypes at intermediate depths in the water column. To obtain a more comprehensive dataset over a wider biogeographical scope, we used a 454-pyrosequencing approach to analyze the diversity of the Prochlorococcus rpoC1 gene from a total of 113 samples at various depths (up to 500 m) from 45 stations spanning the Red Sea basin from north to south. In addition, we analyzed 45 metagenomes from eight stations using hidden Markov models based on a set of reference Prochlorococcus genomes to (1) estimate the relative abundance of Prochlorococcus based on 16S rRNA gene sequences, and (2) identify and classify rpoC1 sequences as an assessment of the community structure of Prochlorococcus in the northern, central and southern regions of the basin without amplification bias. Analyses of metagenomic data indicated that Prochlorococcus occurs at a relative abundance of around 9% in samples from surface waters (25, 50, 75 m), 3% in intermediate waters (100 m) and around 0.5% in deep-water samples (200–500 m). Results based on rpoC1 sequences using both methods showed that HL II cells dominate surface waters and were also present in deep-water samples. Prochlorococcus communities in intermediate waters (100 m) showed a higher diversity and co-occurrence of low-light and high-light ecotypes. Prochlorococcus communities at each depth range (surface, intermediate, deep sea) did not change significantly over the sampled transects spanning most of the Saudi waters in the Red Sea. Statistical analyses of rpoC1 sequences from metagenomes indicated that the vertical distribution of Prochlorococcus in the water

  10. Distribution of Prochlorococcus Ecotypes in the Red Sea Basin Based on Analyses of rpoC1 Sequences

    KAUST Repository

    Shibl, Ahmed A.

    2016-06-25

    The marine picocyanobacteria Prochlorococcus represent a significant fraction of the global pelagic bacterioplankton community. Specifically, in the surface waters of the Red Sea, they account for around 91% of the phylum Cyanobacteria. Previous work suggested a widespread presence of high-light (HL)-adapted ecotypes in the Red Sea with the occurrence of low-light (LL)-adapted ecotypes at intermediate depths in the water column. To obtain a more comprehensive dataset over a wider biogeographical scope, we used a 454-pyrosequencing approach to analyze the diversity of the Prochlorococcus rpoC1 gene from a total of 113 samples at various depths (up to 500 m) from 45 stations spanning the Red Sea basin from north to south. In addition, we analyzed 45 metagenomes from eight stations using hidden Markov models based on a set of reference Prochlorococcus genomes to (1) estimate the relative abundance of Prochlorococcus based on 16S rRNA gene sequences, and (2) identify and classify rpoC1 sequences as an assessment of the community structure of Prochlorococcus in the northern, central and southern regions of the basin without amplification bias. Analyses of metagenomic data indicated that Prochlorococcus occurs at a relative abundance of around 9% in samples from surface waters (25, 50, 75 m), 3% in intermediate waters (100 m) and around 0.5% in deep-water samples (200–500 m). Results based on rpoC1 sequences using both methods showed that HL II cells dominate surface waters and were also present in deep-water samples. Prochlorococcus communities in intermediate waters (100 m) showed a higher diversity and co-occurrence of low-light and high-light ecotypes. Prochlorococcus communities at each depth range (surface, intermediate, deep sea) did not change significantly over the sampled transects spanning most of the Saudi waters in the Red Sea. Statistical analyses of rpoC1 sequences from metagenomes indicated that the vertical distribution of Prochlorococcus in the water

  11. Combined effects of blue light and supplemental far-red light and effects of increasing red light with constant far-red light on growth of kidney bean [Phaseolus vulgaris] under mixtures of narrow-band light sources

    International Nuclear Information System (INIS)

    Hanyu, H.; Shoji, K.

    2000-01-01

    Increasing blue light and decreasing R: FR with supplementary far-red light affect morphogenesis, dry matter production and dry matter partitioning to leaves, stems and roots. In this study, the combined effects of the two spectral treatments were examined in kidney bean (Phaseolus vulgaris L.) grown under the mixture of four different narrow-band light sources. In addition, because the leaf and stem growth are accelerated by increasing red light (600-700 nm) in proportion to far-red light (700-800 nm) while keeping R : FR constant, this study was conducted to determine whether red light or far-red light causes the acceleration of growth. Increasing blue light (400-500 nm) and decreasing R : FR only interacted on stem extension. The results illustrated with figures suggest that blue light amplifies or attenuates the acceleration of stem extension caused by decreasing R : FR. On the other hand, increasing red light with constant far-red light had no influence on leaf expansion or stem extension while R : FR increased. Because the acceleration of leaf and stem growth is caused by increasing either far-red light or both red and far-red light in our environmental conditions, the stimulative effects on leaves and stems seem to require increases in far-red light rather than red light

  12. Diseño de una red WAN

    OpenAIRE

    Labella Sanz, Gabriel

    2010-01-01

    Disseny d'una xarxa WAN, formada per una xarxa d'Accés HFC, una xarxa de Commutació ATM i una xarxa de Transport SDH. Diseño de una red WAN, formada por una red de Acceso HFC, una red de Conmutación ATM y una red de Transporte SDH. WAN network design consisting of a HFC access network, an ATM switching network and a SDH transport network.

  13. Metagenomic covariation along densely sampled environmental gradients in the Red Sea

    Science.gov (United States)

    Thompson, Luke R; Williams, Gareth J; Haroon, Mohamed F; Shibl, Ahmed; Larsen, Peter; Shorenstein, Joshua; Knight, Rob; Stingl, Ulrich

    2017-01-01

    Oceanic microbial diversity covaries with physicochemical parameters. Temperature, for example, explains approximately half of global variation in surface taxonomic abundance. It is unknown, however, whether covariation patterns hold over narrower parameter gradients and spatial scales, and extending to mesopelagic depths. We collected and sequenced 45 epipelagic and mesopelagic microbial metagenomes on a meridional transect through the eastern Red Sea. We asked which environmental parameters explain the most variation in relative abundances of taxonomic groups, gene ortholog groups, and pathways—at a spatial scale of water mass with different physicochemical properties. Temperature explained the most variation in each metric, followed by nitrate, chlorophyll, phosphate, and salinity. That nitrate explained more variation than phosphate suggested nitrogen limitation, consistent with low surface N:P ratios. Covariation of gene ortholog groups with environmental parameters revealed patterns of functional adaptation to the challenging Red Sea environment: high irradiance, temperature, salinity, and low nutrients. Nutrient-acquisition gene ortholog groups were anti-correlated with concentrations of their respective nutrient species, recapturing trends previously observed across much larger distances and environmental gradients. This dataset of metagenomic covariation along densely sampled environmental gradients includes online data exploration supplements, serving as a community resource for marine microbial ecology. PMID:27420030

  14. Spectral relationships for atmospheric correction. I. Validation of red and near infra-red marine reflectance relationships.

    Science.gov (United States)

    Goyens, C; Jamet, C; Ruddick, K G

    2013-09-09

    The present study provides an extensive overview of red and near infra-red (NIR) spectral relationships found in the literature and used to constrain red or NIR-modeling schemes in current atmospheric correction (AC) algorithms with the aim to improve water-leaving reflectance retrievals, ρw(λ), in turbid waters. However, most of these spectral relationships have been developed with restricted datasets and, subsequently, may not be globally valid, explaining the need of an accurate validation exercise. Spectral relationships are validated here with turbid in situ data for ρw(λ). Functions estimating ρw(λ) in the red were only valid for moderately turbid waters (ρw(λNIR) turbidity ranges presented in the in situ dataset. In the NIR region of the spectrum, the constant NIR reflectance ratio suggested by Ruddick et al. (2006) (Limnol. Oceanogr. 51, 1167-1179), was valid for moderately to very turbid waters (ρw(λNIR) turbid waters (ρw(λNIR) > 10(-2)). The results of this study suggest to use the red bounding equations and the polynomial NIR function to constrain red or NIR-modeling schemes in AC processes with the aim to improve ρw(λ) retrievals where current AC algorithms fail.

  15. The phylogeography of red and yellow coppersmith barbets (Aves: Megalaima haemacephala

    Directory of Open Access Journals (Sweden)

    Robert-Jan eDen Tex

    2014-05-01

    Full Text Available Understanding the evolution of color in birds is important because it is used for both inter- and intra-specific communication and is often linked to other important traits including life history, behavior, immunology and mate choice. The coppersmith barbet (Megalaima haemacephala is widely distributed across southern Asia and many islands of the Sunda shelf and the Philippines. It occurs in two well-differentiated and completely allopatric color morphs, a red- and a yellow-headed form. We constructed a phylogeny of coppersmith barbets from both color morphs and from across their range using sequences from two mitochondrial and one nuclear loci. Strong geographical patterns were found, in which India and Sri Lanka, the Philippines and mainland tropical east Asia (TE Asia, and the islands on the Sunda shelf (Sundaland each formed a divergent group. The red birds formed two clades within the diversity of yellow animals. Major clades were dated using a molecular clock calibrated on a larger phylogeny. The phylogeographic patterns suggest that the species likely originated in TE Asia/ Sundaland and then colonized the Philippines from the south in the mid-Pleistocene, via a now extinct population on Borneo. More recently, coppersmith barbets colonized India and Sri Lanka, also from TE Asia/ Sundaland. Coppersmith barbets were also likely distributed in the past on the Malay Peninsula, but went extinct there too. The population that now inhabits this region derives from a natural recolonization of yellow morph birds about 80 years ago. The red morph evolved at least twice independently from the yellow morph in the late Pleistocene, suggesting that this change does not require very many mutational steps, and thus can arise repeatedly.

  16. Effect of Red Pepper ( Powder or Red Pepper Pigment on the Performance and Egg Yolk Color of Laying Hens

    Directory of Open Access Journals (Sweden)

    Huaqiang Li

    2012-11-01

    Full Text Available Two experiments were conducted to study the effects of red pepper (Capsicum frutescens powder or red pepper pigment on the performance and egg yolk color of laying hens. In Exp. 1, 210, thirty-wk old, Hy-line Brown laying hens were fed one of seven diets containing 0.3, 0.6, 1.2, 2.0, 4.8 or 9.6 ppm red pepper pigment or 0.3 ppm carophyll red. Each diet was fed to three replicate batteries of hens with each battery consisting of a row of five cages of hens with two hens per cage (n = 3. In Exp. 2, 180, thirty-wk old, Hyline Brown laying hens, housed similarly to those in Exp. 1, were fed an unsupplemented basal diet as well as treatments in which the basal diet was supplemented with 0.8% red pepper powder processed in a laboratory blender to an average particle size of 300 μm, 0.8% red pepper powder processed as a super fine powder with a vibrational mill (44 μm and finally 0.8% red pepper powder processed as a super fine powder with a vibrational mill but mixed with 5% Na2CO3 either before or after grinding. A diet supplemented with 0.3 ppm carophyll red pigment was also included (n = 3. In both experiments, hens were fed the red pepper powder or pigment for 14 days. After feeding of the powder or pigment was terminated, all hens were fed the basal diet for eight more days to determine if the dietary treatments had any residual effects. In Exp. 1, there were no differences in egg-laying performance, feed consumption or feed conversion ratio due to inclusion of red pepper pigment in the diet. Average egg weight was higher (p0.05. However, compared with the control group, supplementation with all of the red pepper powder treatments increased egg weight (p<0.05. All the red pepper powder treatments also increased (p<0.05 the yolk color score compared with the control. The results of the present study suggest that both red pepper powder and pigment are effective feed additives for improving egg yolk color for laying hens.

  17. Habitability of super-Earth planets around other suns: models including Red Giant Branch evolution.

    Science.gov (United States)

    von Bloh, W; Cuntz, M; Schröder, K-P; Bounama, C; Franck, S

    2009-01-01

    The unexpected diversity of exoplanets includes a growing number of super-Earth planets, i.e., exoplanets with masses of up to several Earth masses and a similar chemical and mineralogical composition as Earth. We present a thermal evolution model for a 10 Earth-mass planet orbiting a star like the Sun. Our model is based on the integrated system approach, which describes the photosynthetic biomass production and takes into account a variety of climatological, biogeochemical, and geodynamical processes. This allows us to identify a so-called photosynthesis-sustaining habitable zone (pHZ), as determined by the limits of biological productivity on the planetary surface. Our model considers solar evolution during the main-sequence stage and along the Red Giant Branch as described by the most recent solar model. We obtain a large set of solutions consistent with the principal possibility of life. The highest likelihood of habitability is found for "water worlds." Only mass-rich water worlds are able to realize pHZ-type habitability beyond the stellar main sequence on the Red Giant Branch.

  18. Experience reverses the red effect among Chinese stockbrokers.

    Science.gov (United States)

    Zhang, Tengxiao; Han, Buxin

    2014-01-01

    Recent research has shown that the color red influences psychological functioning. Red is hypothesized to be linked to aggression and danger in evolution, and these links are enhanced by culture-specific uses of red. Thus, color meanings are thought to be grounded in biologically based proclivities and learned associations. However, to date, there has been no direct evidence for the influence of experience on the red effect. This study focused on whether experience could change the psychological effects of the color red. In the context of the Chinese stock market, contrary to the meaning generally associated with red as negative and green as positive, red represents a rise in stock price and green stands for a decrease. An experiment using a 2×2 between subjects factorial design demonstrated that red (compared with green) impaired Chinese college students' performance on an IQ test (in accordance with the red effect), but the opposite effect was found among stockbrokers. These results provide direct evidence of learned color meanings, in support of the general model of color effect.

  19. Temporal variation of epi- and endofaunal assemblages associated with the red sponge Tedania ignis on a rocky shore (São Sebastião Channel, SE Brazil

    Directory of Open Access Journals (Sweden)

    Fosca P. P. Leite

    2016-01-01

    Full Text Available ABSTRACT Sponges are biogenic substrates that increase the available space on rocky shores and provide shelter for many groups of the benthic fauna, which can live both inside and on these sessile invertebrates. In order to assess the differences in temporal variation of endobiont and epibiont groups, samples of the red sponge Tedania ignis (Duchassaing & Michelotti, 1864 were obtained each month for one year. The density, richness and diversity of endobiont and epibiont groups were analyzed in relation to abiotic factors. The dry mass of the sponge was negatively correlated with the density of individuals in both groups and positively with the diversity of endobionts, while organic matter was positively correlated with the diversity of epibionts. Endobiont diversity was more highly correlated with intrinsic factors of the sponge, whereas the diversity of epibionts was more highly correlated with factors related to the surrounding environment.

  20. [Separation and identification of red pigments in natural red yolk of duck's eggs by HPLC-MS-MS].

    Science.gov (United States)

    Liu, Liangzhong; Zhang, Min; Peng, Guanghua; Wang, Haibin; Zhang, Shenghua

    2004-05-01

    The natural red yolk of duck's eggs is produced by the laying duck in the lake areas in southward of China. In the laying duck breeding areas such as Honghu, Jianli, Xiantao, Tianmen and Hanchuan citys in Hubei Province, the culturists are used to feeding fresh pondweeds to the laying ducks. The yolk of duck's eggs is natural red with the chrominance reaching up to and/or above RCF (Roche Yolk Color Fan) 15. The red pigment components of natural red yolk of duck's eggs were separated and identified by thin layer chromatography (TLC), high performance liquid chromatography-mass spectrometry-mass spectrometry (HPLC-MS-MS) and high resolution electron impact-mass spectrometry (EI-MS). Four isomers of red pigments were separated by HPLC on a RP-C18 column with methanol-water (99.5:0.5, v/v) as mobile phase. The lambda(max) of the four components were 482, 488, 496, 501 nm, respectively, and all of them were single peak on chromatogram. They had the same molecular mass (Mr = 562), and had the same fragment peaks of MS2 with rhodoxanthin. The molecular formula of red pigments was determined as C40H50O2 by high resolution EI-MS. The results indicate that the red pigment is rhodoxanthin, and they are all cis-isomers of rhodoxanthin.

  1. Calcification–carbonation method for red mud processing

    Energy Technology Data Exchange (ETDEWEB)

    Li, Ruibing [School of Metallurgy, Northeastern University, Shenyang 110819 (China); Laboratory for Simulation and Modelling of Particulate Systems, Department of Chemical Engineering, Monash University, Clayton, Victoria, 3800 (Australia); Zhang, Tingan, E-mail: zhangta@smm.neu.edu.cn [School of Metallurgy, Northeastern University, Shenyang 110819 (China); Liu, Yan; Lv, Guozhi; Xie, Liqun [School of Metallurgy, Northeastern University, Shenyang 110819 (China)

    2016-10-05

    Highlights: • A new approach named calcification–carbonation method for red mud processing is proposed. • The method can prevent emission of red mud from alumina production and is good for the environment. • Thermodynamics characteristics were investigated. • The method was verified experimentally using a jet-flow reactor. - Abstract: Red mud, the Bayer process residue, is generated from alumina industry and causes environmental problem. In this paper, a novel calcification–carbonation method that utilized a large amount of the Bayer process residue is proposed. Using this method, the red mud was calcified with lime to transform the silicon phase into hydrogarnet, and the alkali in red mud was recovered. Then, the resulting hydrogarnet was decomposed by CO{sub 2} carbonation, affording calcium silicate, calcium carbonate, and aluminum hydroxide. Alumina was recovered using an alkaline solution at a low temperature. The effects of the new process were analyzed by thermodynamics analysis and experiments. The extraction efficiency of the alumina and soda obtained from the red mud reached 49.4% and 96.8%, respectively. The new red mud with <0.3% alkali can be used in cement production. Using a combination of this method and cement production, the Bayer process red mud can be completely utilized.

  2. Uptake of carnitine by red blood cells

    International Nuclear Information System (INIS)

    Campa, M.; Borum, P.

    1986-01-01

    A significant amount of blood carnitine (70% of cord blood and 40% of blood from healthy adults) is partitioned into the red blood cell compartment of whole blood. Data indicate that the plasma compartment and the red blood cell compartment of whole blood represent different metabolic pools of carnitine. There are no data to indicate that red blood cells synthesize carnitine, but our understanding of the uptake of carnitine by red blood cells is negligible. Red blood cells were obtained from healthy adults, washed twice with normal saline, and used for uptake experiments. When the cells were incubated at 37 0 C in the presence of 14 C-carnitine, radioactivity was found both in the soluble cytosolic and membrane fractions of the cells following lysis. The uptake was dependent upon the time of incubation, temperature of incubation, and carnitine concentration in the incubation medium. Washed red blood cell membranes incubated with 14 C-carnitine showed specific binding of radioactivity. These data are consistent with the hypothesis that red blood cells have an uptake mechanism for L-carnitine

  3. Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea.

    Science.gov (United States)

    Roberts, May B; Jones, Geoffrey P; McCormick, Mark I; Munday, Philip L; Neale, Stephen; Thorrold, Simon; Robitzch, Vanessa S N; Berumen, Michael L

    2016-04-30

    Coral reef communities between 26.8 °N and 18.6 °N latitude in the Saudi Arabian Red Sea were surveyed to provide baseline data and an assessment of fine-scale biogeography of communities in this region. Forty reefs along 1100 km of coastline were surveyed using depth-stratified visual transects of fish and benthic communities. Fish abundance and benthic cover data were analyzed using multivariate approaches to investigate whether coral reef communities differed with latitude. A total of 215 fish species and 90 benthic categories were recorded on the surveys. There were no significant differences among locations in fish abundance, species richness, or among several diversity indices. Despite known environmental gradients within the Red Sea, the communities remained surprisingly similar. The communities do, however, exhibit subtle changes across this span of reefs that likely reflect the constrained distributions of several species of reef fish and benthic fauna. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. Evaluation of Red Light Camera Enforcement at Signalized Intersections

    Directory of Open Access Journals (Sweden)

    Abdulrahman AlJanahi

    2007-12-01

    Full Text Available The study attempts to find the effectiveness of adopting red light cameras in reducing red light violators. An experimental approach was adopted to investigate the use of red light cameras at signalized intersections in the Kingdom of Bahrain. The study locations were divided into three groups. The first group was related to the approaches monitored with red light cameras. The second group was related to approaches without red light cameras, but located within an intersection that had one of its approaches monitored with red light cameras. The third group was related to intersection approaches located at intersection without red light cameras (controlled sites. A methodology was developed for data collection. The data were then tested statistically by Z-test using proportion methods to compare the proportion of red light violations occurring at different sites. The study found that the proportion of red light violators at approaches monitored with red light cameras was significantly less than those at the controlled sites for most of the time. Approaches without red light cameras located within intersections having red light cameras showed, in general, fewer violations than controlled sites, but the results were not significant for all times of the day. The study reveals that red light cameras have a positive effect on reducing red light violations. However, these conclusions need further evaluations to justify their safe and economic use.

  5. Antibacterial Compounds from Red Seaweeds (Rhodophyta)

    OpenAIRE

    Noer Kasanah; Triyanto Triyanto; Drajad Sarwo Seto; Windi Amelia; Alim Isnansetyo

    2015-01-01

    Seaweeds produce great variety of metabolites benefit for human. Red seaweeds (Rhodophyta) are well known as producer of phycocolloids such agar, agarose, carragenan and great variety of secondary metabolites. This review discusses the red algal secondary metabolites with antibacterial activity. The chemical constituents of red algae are steroid, terpenoid, acetogenin and dominated by halogenated compounds mainly brominated compounds. Novel compounds with intriguing skeleton are also reported...

  6. Aerobic methanotrophic communities at the Red Sea brine-seawater interface

    Directory of Open Access Journals (Sweden)

    Rehab Z. Abdallah

    2014-09-01

    Full Text Available The central rift of the Red Sea contains 25 brine pools with different physicochemical conditions, dictating the diversity and abundance of the microbial community. Three of these pools, the Atlantis II, Kebrit and Discovery Deeps, are uniquely characterized by a high concentration of hydrocarbons. The brine-seawater interface, described as an anoxic-oxic (brine-seawater boundary, is characterized by a high methane concentration, thus favoring aerobic methane oxidation. The current study analyzed the aerobic free–living methane-oxidizing bacterial communities that potentially contribute to methane oxidation at the brine-seawater interfaces of the three aforementioned brine pools, using metagenomic pyrosequencing, 16S rRNA pyrotags and pmoA library constructs. The sequencing of 16S rRNA pyrotags revealed that these interfaces are characterized by high microbial community diversity. Signatures of aerobic methane-oxidizing bacteria were detected in the Atlantis II Interface (ATII-I and the Kebrit Deep Upper (KB-U and Lower (KB-L brine-seawater interfaces. Through phylogenetic analysis of pmoA, we further demonstrated that the ATII-I aerobic methanotroph community is highly diverse. We propose four ATII-I pmoA clusters. Most importantly, cluster 2 groups with marine methane seep methanotrophs, and cluster 4 represent a unique lineage of an uncultured bacterium with divergent alkane monooxygenases. Moreover, non-metric multidimensional scaling (NMDS based on the ordination of putative enzymes involved in methane metabolism showed that the Kebrit interface layers were distinct from the ATII-I and DD-I brine-seawater interfaces.

  7. The interplay of diversity training and diversity beliefs on team creativity in nationality diverse teams.

    Science.gov (United States)

    Homan, Astrid C; Buengeler, Claudia; Eckhoff, Robert A; van Ginkel, Wendy P; Voelpel, Sven C

    2015-09-01

    Attaining value from nationality diversity requires active diversity management, which organizations often employ in the form of diversity training programs. Interestingly, however, the previously reported effects of diversity training are often weak and, sometimes, even negative. This situation calls for research on the conditions under which diversity training helps or harms teams. We propose that diversity training can increase team creativity, but only for teams with less positive pretraining diversity beliefs (i.e., teams with a greater need for such training) and that are sufficiently diverse in nationality. Comparing the creativity of teams that attended nationality diversity training versus control training, we found that for teams with less positive diversity beliefs, diversity training increased creative performance when the team's nationality diversity was high, but undermined creativity when the team's nationality diversity was low. Diversity training had less impact on teams with more positive diversity beliefs, and training effects were not contingent upon these teams' diversity. Speaking to the underlying process, we showed that these interactive effects were driven by the experienced team efficacy of the team members. We discuss theoretical and practical implications for nationality diversity management. (c) 2015 APA, all rights reserved).

  8. Behavioral interactions of penned red and arctic foxes

    Science.gov (United States)

    Rudzinski, D.R.; Graves, H.B.; Sargeant, A.B.; Storm, G.L.

    1982-01-01

    Expansion of the geographical distribution of red foxes (Vulpes vulpes) into the far north tundra region may lead to competition between arctic (Alopex lagopus) and red foxes for space and resources. Behavioral interactions between red and arctic foxes were evaluated during 9 trials conducted in a 4.05-ha enclosure near Woodworth, North Dakota. Each trial consisted of introducing a male-female pair of arctic foxes into the enclosure and allowing them to acclimate for approximately a week before releasing a female red fox into the enclosure, followed by her mate a few days later. In 8 of 9 trials, red foxes were dominant over arctic foxes during encounters. Activity of the arctic foxes decreased upon addition of red foxes. Arctic foxes tried unsuccessfully to defend preferred den, resting, and feeding areas. Even though the outcome of competition between red and arctic foxes in the Arctic is uncertain, the more aggressive red fox can dominate arctic foxes in direct competition for den sites and other limited resources.

  9. redMaGiC: selecting luminous red galaxies from the DES Science Verification data

    Energy Technology Data Exchange (ETDEWEB)

    Rozo, E. [Univ. of Arizona, Tucson, AZ (United States). et al.

    2016-05-30

    We introduce redMaGiC, an automated algorithm for selecting Luminous Red Galaxies (LRGs). The algorithm was developed to minimize photometric redshift uncertainties in photometric large-scale structure studies. redMaGiC achieves this by self-training the color-cuts necessary to produce a luminosity-thresholded LRG sam- ple of constant comoving density. Additionally, we demonstrate that redMaGiC photo-zs are very nearly as accurate as the best machine-learning based methods, yet they require minimal spectroscopic training, do not suffer from extrapolation biases, and are very nearly Gaussian. We apply our algorithm to Dark Energy Survey (DES) Science Verification (SV) data to produce a redMaGiC catalog sampling the redshift range z ϵ [0.2,0.8]. Our fiducial sample has a comoving space density of 10-3 (h-1Mpc)-3, and a median photo-z bias (zspec zphoto) and scatter (σz=(1 + z)) of 0.005 and 0.017 respectively.The corresponding 5σ outlier fraction is 1.4%. We also test our algorithm with Sloan Digital Sky Survey (SDSS) Data Release 8 (DR8) and Stripe 82 data, and discuss how spectroscopic training can be used to control photo-z biases at the 0.1% level.

  10. Red and Green Fluorescence from Oral Biofilms.

    Science.gov (United States)

    Volgenant, Catherine M C; Hoogenkamp, Michel A; Krom, Bastiaan P; Janus, Marleen M; Ten Cate, Jacob M; de Soet, Johannes J; Crielaard, Wim; van der Veen, Monique H

    2016-01-01

    Red and green autofluorescence have been observed from dental plaque after excitation by blue light. It has been suggested that this red fluorescence is related to caries and the cariogenic potential of dental plaque. Recently, it was suggested that red fluorescence may be related to gingivitis. Little is known about green fluorescence from biofilms. Therefore, we assessed the dynamics of red and green fluorescence in real-time during biofilm formation. In addition, the fluorescence patterns of biofilm formed from saliva of eight different donors are described under simulated gingivitis and caries conditions. Biofilm formation was analysed for 12 hours under flow conditions in a microfluidic BioFlux flow system with high performance microscopy using a camera to allow live cell imaging. For fluorescence images dedicated excitation and emission filters were used. Both green and red fluorescence were linearly related with the total biomass of the biofilms. All biofilms displayed to some extent green and red fluorescence, with higher red and green fluorescence intensities from biofilms grown in the presence of serum (gingivitis simulation) as compared to the sucrose grown biofilms (cariogenic simulation). Remarkably, cocci with long chain lengths, presumably streptococci, were observed in the biofilms. Green and red fluorescence were not found homogeneously distributed within the biofilms: highly fluorescent spots (both green and red) were visible throughout the biomass. An increase in red fluorescence from the in vitro biofilms appeared to be related to the clinical inflammatory response of the respective saliva donors, which was previously assessed during an in vivo period of performing no-oral hygiene. The BioFlux model proved to be a reliable model to assess biofilm fluorescence. With this model, a prediction can be made whether a patient will be prone to the development of gingivitis or caries.

  11. Red and Green Fluorescence from Oral Biofilms.

    Directory of Open Access Journals (Sweden)

    Catherine M C Volgenant

    Full Text Available Red and green autofluorescence have been observed from dental plaque after excitation by blue light. It has been suggested that this red fluorescence is related to caries and the cariogenic potential of dental plaque. Recently, it was suggested that red fluorescence may be related to gingivitis. Little is known about green fluorescence from biofilms. Therefore, we assessed the dynamics of red and green fluorescence in real-time during biofilm formation. In addition, the fluorescence patterns of biofilm formed from saliva of eight different donors are described under simulated gingivitis and caries conditions. Biofilm formation was analysed for 12 hours under flow conditions in a microfluidic BioFlux flow system with high performance microscopy using a camera to allow live cell imaging. For fluorescence images dedicated excitation and emission filters were used. Both green and red fluorescence were linearly related with the total biomass of the biofilms. All biofilms displayed to some extent green and red fluorescence, with higher red and green fluorescence intensities from biofilms grown in the presence of serum (gingivitis simulation as compared to the sucrose grown biofilms (cariogenic simulation. Remarkably, cocci with long chain lengths, presumably streptococci, were observed in the biofilms. Green and red fluorescence were not found homogeneously distributed within the biofilms: highly fluorescent spots (both green and red were visible throughout the biomass. An increase in red fluorescence from the in vitro biofilms appeared to be related to the clinical inflammatory response of the respective saliva donors, which was previously assessed during an in vivo period of performing no-oral hygiene. The BioFlux model proved to be a reliable model to assess biofilm fluorescence. With this model, a prediction can be made whether a patient will be prone to the development of gingivitis or caries.

  12. Simulation of the three-dimensional distribution of the red:far-red ratio within crop canopies

    NARCIS (Netherlands)

    Chelle, M.; Evers, J.B.; Combes, D.; Varlet-Grancher, C.; Vos, J.; Andrieu, B.

    2007-01-01

    It is widely recognized that the red:far-red ratio (zeta) acts as a signal that triggers plant morphogenesis. New insights into photomorphogenesis have been gained through experiments in controlled environments. Extrapolation of such results to field conditions requires characterization of the zeta

  13. Does staff diversity imply openness to diversity?

    DEFF Research Database (Denmark)

    Lauring, Jakob; Selmer, Jan

    2013-01-01

    Purpose – Post-secondary educational organizations are currently some of the most diverse settings to be found. However, few educational studies have dealt with staff diversity and hardly any has looked outside the USA. The purpose of this paper is to present a study of members of international...... university departments in Denmark. The authors set out to investigate the relationship between different types of staff diversity and openness to diversity in terms of linguistic, visible, value, and informational heterogeneity. Design/methodology/approach – This study uses responses from 489 staff members......, was unrelated or negatively associated with positive diversity attitudes. Originality/value – Few studies deal with the role of staff diversity and no prior studies the authors know of have examined the link between diversity types and openness to diversity....

  14. Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells

    Directory of Open Access Journals (Sweden)

    Moser Ann B

    2013-02-01

    Full Text Available Abstract Background Humans and rodents with impaired phytanic acid (PA metabolism can accumulate toxic stores of PA that have deleterious effects on multiple organ systems. Ruminants and certain fish obtain PA from the microbial degradation of dietary chlorophyll and/or through chlorophyll-derived precursors. In contrast, humans cannot derive PA from chlorophyll and instead normally obtain it only from meat, dairy, and fish products. Results Captive apes and Old world monkeys had significantly higher red blood cell (RBC PA levels relative to humans when all subjects were fed PA-deficient diets. Given the adverse health effects resulting from PA over accumulation, we investigated the molecular evolution of thirteen PA metabolism genes in apes, Old world monkeys, and New world monkeys. All non-human primate (NHP orthologs are predicted to encode full-length proteins with the marmoset Phyh gene containing a rare, but functional, GA splice donor dinucleotide. Acox2, Scp2, and Pecr sequences had amino acid positions with accelerated substitution rates while Amacr had significant variation in evolutionary rates in apes relative to other primates. Conclusions Unlike humans, diverse captive NHPs with PA-deficient diets rich in plant products have substantial RBC PA levels. The favored hypothesis is that NHPs can derive significant amounts of PA from the degradation of ingested chlorophyll through gut fermentation. If correct, this raises the possibility that RBC PA levels could serve as a biomarker for evaluating the digestive health of captive NHPs. Furthermore, the evolutionary rates of the several genes relevant to PA metabolism provide candidate genetic adaptations to NHP diets.

  15. Statistics of strain rates and surface density function in a flame-resolved high-fidelity simulation of a turbulent premixed bluff body burner

    Science.gov (United States)

    Sandeep, Anurag; Proch, Fabian; Kempf, Andreas M.; Chakraborty, Nilanjan

    2018-06-01

    The statistical behavior of the surface density function (SDF, the magnitude of the reaction progress variable gradient) and the strain rates, which govern the evolution of the SDF, have been analyzed using a three-dimensional flame-resolved simulation database of a turbulent lean premixed methane-air flame in a bluff-body configuration. It has been found that the turbulence intensity increases with the distance from the burner, changing the flame curvature distribution and increasing the probability of the negative curvature in the downstream direction. The curvature dependences of dilatation rate ∇ṡu → and displacement speed Sd give rise to variations of these quantities in the axial direction. These variations affect the nature of the alignment between the progress variable gradient and the local principal strain rates, which in turn affects the mean flame normal strain rate, which assumes positive values close to the burner but increasingly becomes negative as the effect of turbulence increases with the axial distance from the burner exit. The axial distance dependences of the curvature and displacement speed also induce a considerable variation in the mean value of the curvature stretch. The axial distance dependences of the dilatation rate and flame normal strain rate govern the behavior of the flame tangential strain rate, and its mean value increases in the downstream direction. The current analysis indicates that the statistical behaviors of different strain rates and displacement speed and their curvature dependences need to be included in the modeling of flame surface density and scalar dissipation rate in order to accurately capture their local behaviors.

  16. Red and green fluorescence from oral biofilms

    NARCIS (Netherlands)

    Volgenant, C.M.C.; Hoogenkamp, M.A.; Krom, B.P.; Janus, M.M.; ten Cate, J.M.; de Soet, J.J.; Crielaard, W.; van der Veen, M.H.

    2016-01-01

    Red and green autofluorescence have been observed from dental plaque after excitation by blue light. It has been suggested that this red fluorescence is related to caries and the cariogenic potential of dental plaque. Recently, it was suggested that red fluorescence may be related to gingivitis.

  17. Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers

    KAUST Repository

    Kharbush, Jenan J

    2018-04-10

    Hopanoids, including the extended side chain-containing bacteriohopanepolyols (BHPs), are bacterial lipids found abundantly in the geological record and across Earth\\'s surface environments. However, the physiological roles of this biomarker remain uncertain, limiting interpretation of their presence in current and past environments. Recent work investigating the diversity and distribution of hopanoid producers in the marine environment implicated low-oxygen regions as important loci of hopanoid production, and data from marine oxygen minimum zones (OMZs) suggested that the dominant hopanoid producers in these environments are nitrite-utilizing organisms, revealing a potential connection between hopanoid production and the marine nitrogen cycle. Here we use metagenomic data from the Red Sea to investigate the ecology of hopanoid producers in an environmental setting that is biogeochemically distinct from those investigated previously. The distributions of hopanoid production and nitrite oxidation genes in the Red Sea are closely correlated, and the majority of hopanoid producers are taxonomically affiliated with the major marine nitrite oxidizers, Nitrospinae and Nitrospirae. These results suggest that the relationship between hopanoid production and nitrite oxidation is conserved across varying biogeochemical conditions in dark ocean microbial ecosystems.

  18. Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers

    KAUST Repository

    Kharbush, Jenan J; Thompson, Luke R; Haroon, Mohamed; Knight, Rob; Aluwihare, Lihini I

    2018-01-01

    Hopanoids, including the extended side chain-containing bacteriohopanepolyols (BHPs), are bacterial lipids found abundantly in the geological record and across Earth's surface environments. However, the physiological roles of this biomarker remain uncertain, limiting interpretation of their presence in current and past environments. Recent work investigating the diversity and distribution of hopanoid producers in the marine environment implicated low-oxygen regions as important loci of hopanoid production, and data from marine oxygen minimum zones (OMZs) suggested that the dominant hopanoid producers in these environments are nitrite-utilizing organisms, revealing a potential connection between hopanoid production and the marine nitrogen cycle. Here we use metagenomic data from the Red Sea to investigate the ecology of hopanoid producers in an environmental setting that is biogeochemically distinct from those investigated previously. The distributions of hopanoid production and nitrite oxidation genes in the Red Sea are closely correlated, and the majority of hopanoid producers are taxonomically affiliated with the major marine nitrite oxidizers, Nitrospinae and Nitrospirae. These results suggest that the relationship between hopanoid production and nitrite oxidation is conserved across varying biogeochemical conditions in dark ocean microbial ecosystems.

  19. Retrospective analysis of diversity and species composition of marine macroalgae of Hainan Island (China)

    Science.gov (United States)

    Titlyanov, Eduard A.; Titlyanova, Tamara V.; Xia, Bangmei; Bartsch, Inka

    2016-09-01

    Retrospective analysis of diversity and species composition of marine macroalgae of Hainan Island in the period 1933-1992 is presented in this paper. There are two extensive sample collection periods of benthic macroalgae: the early collection (EC) covers a period between the early 1930s and the 1980s before considerable urbanization and reef degradation took place and a late collection (LC) was performed in 1990/1992 during a phase of rapid urbanization. Analysis of data also including an earlier published inventory of green algae covering the same collection sites (Titlyanov et al. 2011a) revealed that the marine flora of the island comprises 426 taxa in total, with 59% red algae, 18% brown algae and 23% green algae. In total 59 species of red algae, 11 species of brown algae and 37 species of green algae sampled during the LC are new records for Hainan Island. Considerable floristic changes between EC and LC became evident. In the LC there were significantly more filamentous, tubular or fine blade-like, and often epiphytic, green and red algae with a high surface-to-volume ratio. Additionally a reduction of green, brown and red algal species with larger fleshy or foliose thalli and a low surface-to-volume ratio was observed. It is assumed that the changes reflect the degradation of the coral reef ecosystem around Hainan, which was damaged by human activities especially in the 1950s-1970s.

  20. Trophic interactions among grouper (Epinephelus marginatus), octopus (Octopus vulgaris) and red lobster (Palinurus elephas) in the Western Mediterranean

    OpenAIRE

    Quetglas, A. (Antoni); Reñones, O. (Olga); Goñi, R. (Raquel)

    2001-01-01

    In the present paper a first evaluation of the trophic interactions between grouper, octopus and spiny red lobster in the western Mediterranean is presented. The efficiency of octopus preying on lobsters is also estimated from trap catches. Grouper and octopus base their diet on the same major taxonomic groups and this is reflected in the values of diet overlap. Trophic diversity of grouper and octopus is also very similar. The estimation of the octopus efficiency preying on lobsters shows th...

  1. Diversity

    Science.gov (United States)

    Portraits In Courage Vol. VIII Portraits In Courage Vol. IX Portraits In Courage Vol. X AF Sites Social -Wide Initiative to Promote Diversity and Inclusion in the Federal Workforce Executive Order 13548 : Virtual Diversity Conference Air Force Diversity & Inclusion Air Force Diversity Graphic There is no

  2. Colonization of the Scottish islands via long-distance Neolithic transport of red deer (Cervus elaphus).

    Science.gov (United States)

    Stanton, David W G; Mulville, Jacqueline A; Bruford, Michael W

    2016-04-13

    Red deer (Cervus elaphus) have played a key role in human societies throughout history, with important cultural significance and as a source of food and materials. This relationship can be traced back to the earliest human cultures and continues to the present day. Humans are thought to be responsible for the movement of a considerable number of deer throughout history, although the majority of these movements are poorly described or understood. Studying such translocations allows us to better understand ancient human-wildlife interactions, and in the case of island colonizations, informs us about ancient human maritime practices. This study uses DNA sequences to characterise red deer genetic diversity across the Scottish islands (Inner and Outer Hebrides and Orkney) and mainland using ancient deer samples, and attempts to infer historical colonization events. We show that deer from the Outer Hebrides and Orkney are unlikely to have originated from mainland Scotland, implying that humans introduced red deer from a greater distance. Our results are also inconsistent with an origin from Ireland or Norway, suggesting long-distance maritime travel by Neolithic people to the outer Scottish Isles from an unknown source. Common haplotypes and low genetic differentiation between the Outer Hebrides and Orkney imply common ancestry and/or gene flow across these islands. Close genetic proximity between the Inner Hebrides and Ireland, however, corroborates previous studies identifying mainland Britain as a source for red deer introductions into Ireland. This study provides important information on the processes that led to the current distribution of the largest surviving indigenous land mammal in the British Isles. © 2016 The Authors.

  3. Stockpiling and Comprehensive Utilization of Red Mud Research Progress

    Science.gov (United States)

    Liu, Dong-Yan; Wu, Chuan-Sheng

    2012-01-01

    With increasing production of red mud, the environmental problems caused by it are increasingly serious, and thus the integrated treatment of red mud is imminent. This article provides an overview of the composition and the basic characteristics of red mud. The research progress of safe stockpiling and comprehensive utilization of red mud is summarized. The safe stockpiling of red mud can be divided into two aspects: the design and safe operation of the stocking yard. The comprehensive utilization of red mud can be further divided into three aspects: the effective recycling of components, resource utilization and application in the field of environmental protection. This paper points out that the main focus of previous studies on red mud stockpiling is cost reproduction and land tenure. The recovery of resources from red mud has a high value-added, but low level industrialization. The use of red mud as a building material and filler material is the most effective way to reduce the stockpiling of red mud. Red mud used for environmental remediation materials is a new hotspot and worth promoting for its simple processing and low cost.

  4. Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms.

    Science.gov (United States)

    Jung, Jaejoon; Philippot, Laurent; Park, Woojun

    2016-03-14

    The relationship between microbial biodiversity and soil function is an important issue in ecology, yet most studies have been performed in pristine ecosystems. Here, we assess the role of microbial diversity in ecological function and remediation strategies in diesel-contaminated soils. Soil microbial diversity was manipulated using a removal by dilution approach and microbial functions were determined using both metagenomic analyses and enzymatic assays. A shift from Proteobacteria- to Actinobacteria-dominant communities was observed when species diversity was reduced. Metagenomic analysis showed that a large proportion of functional gene categories were significantly altered by the reduction in biodiversity. The abundance of genes related to the nitrogen cycle was significantly reduced in the low-diversity community, impairing denitrification. In contrast, the efficiency of diesel biodegradation was increased in the low-diversity community and was further enhanced by addition of red clay as a stimulating agent. Our results suggest that the relationship between microbial diversity and ecological function involves trade-offs among ecological processes, and should not be generalized as a positive, neutral, or negative relationship.

  5. Red algae and their use in papermaking.

    Science.gov (United States)

    Seo, Yung-Bum; Lee, Youn-Woo; Lee, Chun-Han; You, Hack-Chul

    2010-04-01

    Gelidialian red algae, that contain rhizoidal filaments, except the family Gelidiellaceae were processed to make bleached pulps, which can be used as raw materials for papermaking. Red algae consist of rhizoidal filaments, cortical cells usually reddish in color, and medullary cells filled with mucilaginous carbohydrates. Red algae pulp consists of mostly rhizoidal filaments. Red algae pulp of high brightness can be produced by extracting mucilaginous carbohydrates after heating the algae in an aqueous medium and subsequently treating the extracted with bleaching chemicals. In this study, we prepared paper samples from bleached pulps obtained from two red algae species (Gelidium amansii and Gelidium corneum) and compared their properties to those of bleached wood chemical pulps. Copyright 2009 Elsevier Ltd. All rights reserved.

  6. Metabarcoding Reveals Seasonal and Temperature-Dependent Succession of Zooplankton Communities in the Red Sea

    KAUST Repository

    Casas, Laura; Pearman, John K.; Irigoien, Xabier

    2017-01-01

    Very little is known about the composition and the annual cycle of zooplankton assemblages in the Red Sea, a confined water body characterized by a high biodiversity and endemism but at the same time one of the most understudied areas in the world in terms of marine biodiversity. This high diversity together with the lack of references for several of the groups poses a problem in obtaining basic information on zooplankton seasonal patterns. In the present work, we used high throughput sequencing to examine the temporal and spatial distribution of the zooplankton communities inhabiting the epipelagic zone in the central Red Sea. The analysis of zooplankton assemblages collected at two sites—coastal and offshore—twice a month at several depth strata by using MANTA, Bongo and WP2 nets provides baseline information of the seasonal patterns of the zooplankton community over 1 year. We show that the seasonal fluctuation of zooplankton communities living in the upper 100 m of the water column is driven mainly by the annual changes in seawater temperature. The 18S rRNA gene was used for metabarcoding of zooplankton assemblages revealing 630 metazoan OTUs (97% similarity) in five phyla, highlighting the richness of the Red Sea community. During colder months, communities were characterized by lower richness and higher biomass than communities found during the hot season. Throughout the year the zooplankton communities were dominated by the class Maxillopoda, mainly represented by copepods and class Hydrozoa. The rise in the water temperature favors the appearance of classes Malacostraca, Cephalopoda, Gastropoda, and Saggitoidea. The present study provides essential baseline information for future monitoring and improves our knowledge of the marine ecosystem in the Red Sea while reporting the main environmental variable structuring zooplankton assemblages in this region.

  7. Metabarcoding Reveals Seasonal and Temperature-Dependent Succession of Zooplankton Communities in the Red Sea

    Directory of Open Access Journals (Sweden)

    Laura Casas

    2017-08-01

    Full Text Available Very little is known about the composition and the annual cycle of zooplankton assemblages in the Red Sea, a confined water body characterized by a high biodiversity and endemism but at the same time one of the most understudied areas in the world in terms of marine biodiversity. This high diversity together with the lack of references for several of the groups poses a problem in obtaining basic information on zooplankton seasonal patterns. In the present work, we used high throughput sequencing to examine the temporal and spatial distribution of the zooplankton communities inhabiting the epipelagic zone in the central Red Sea. The analysis of zooplankton assemblages collected at two sites—coastal and offshore—twice a month at several depth strata by using MANTA, Bongo and WP2 nets provides baseline information of the seasonal patterns of the zooplankton community over 1 year. We show that the seasonal fluctuation of zooplankton communities living in the upper 100 m of the water column is driven mainly by the annual changes in seawater temperature. The 18S rRNA gene was used for metabarcoding of zooplankton assemblages revealing 630 metazoan OTUs (97% similarity in five phyla, highlighting the richness of the Red Sea community. During colder months, communities were characterized by lower richness and higher biomass than communities found during the hot season. Throughout the year the zooplankton communities were dominated by the class Maxillopoda, mainly represented by copepods and class Hydrozoa. The rise in the water temperature favors the appearance of classes Malacostraca, Cephalopoda, Gastropoda, and Saggitoidea. The present study provides essential baseline information for future monitoring and improves our knowledge of the marine ecosystem in the Red Sea while reporting the main environmental variable structuring zooplankton assemblages in this region.

  8. Metabarcoding Reveals Seasonal and Temperature-Dependent Succession of Zooplankton Communities in the Red Sea

    KAUST Repository

    Casas, Laura

    2017-08-02

    Very little is known about the composition and the annual cycle of zooplankton assemblages in the Red Sea, a confined water body characterized by a high biodiversity and endemism but at the same time one of the most understudied areas in the world in terms of marine biodiversity. This high diversity together with the lack of references for several of the groups poses a problem in obtaining basic information on zooplankton seasonal patterns. In the present work, we used high throughput sequencing to examine the temporal and spatial distribution of the zooplankton communities inhabiting the epipelagic zone in the central Red Sea. The analysis of zooplankton assemblages collected at two sites—coastal and offshore—twice a month at several depth strata by using MANTA, Bongo and WP2 nets provides baseline information of the seasonal patterns of the zooplankton community over 1 year. We show that the seasonal fluctuation of zooplankton communities living in the upper 100 m of the water column is driven mainly by the annual changes in seawater temperature. The 18S rRNA gene was used for metabarcoding of zooplankton assemblages revealing 630 metazoan OTUs (97% similarity) in five phyla, highlighting the richness of the Red Sea community. During colder months, communities were characterized by lower richness and higher biomass than communities found during the hot season. Throughout the year the zooplankton communities were dominated by the class Maxillopoda, mainly represented by copepods and class Hydrozoa. The rise in the water temperature favors the appearance of classes Malacostraca, Cephalopoda, Gastropoda, and Saggitoidea. The present study provides essential baseline information for future monitoring and improves our knowledge of the marine ecosystem in the Red Sea while reporting the main environmental variable structuring zooplankton assemblages in this region.

  9. 7 CFR 29.3052 - Red color (R).

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Red color (R). 29.3052 Section 29.3052 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing... Red color (R). A brownish red. [24 FR 8771, Oct. 29, 1959. Redesignated at 47 FR 51722, Nov. 17, 1982...

  10. In vivo red blood cell compatibility testing using indium-113m tropolone-labeled red blood cells

    International Nuclear Information System (INIS)

    Morrissey, G.J.; Gravelle, D.; Dietz, G.; Driedger, A.A.; King, M.; Cradduck, T.D.

    1988-01-01

    In vivo radionuclide crossmatch is a method for identifying compatible blood for transfusion when allo- or autoantibodies preclude the use of conventional crossmatching techniques. A technique for labeling small volumes of donor red blood cells with [/sup 113m/In]tropolone is reported. The use of /sup 113m/In minimizes the accumulation of background radioactivity and the radiation dose especially so when multiple crossmatches are performed. Labeling red cells with [/sup 113m/In]tropolone is faster and easier to perform than with other radionuclides. Consistently high labeling efficiencies are obtained and minimal /sup 113m/In activity elutes from the labeled red blood cells. A case study involving 22 crossmatches is presented to demonstrate the technique. The radiation dose equivalent from /sup 113m/In is significantly less than with other radionuclides that may be used to label red cells

  11. 7 CFR 29.1044 - Orange Red (FR).

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Orange Red (FR). 29.1044 Section 29.1044 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing... Type 92) § 29.1044 Orange Red (FR). A yellowish red. [42 FR 21092, Apr. 25, 1977. Redesignated at 47 FR...

  12. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean

    KAUST Repository

    Coleman, Richard R.

    2016-04-08

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occupies reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d = 0.006 – 0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographical barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST = 0.066 – 0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7 Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4 Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7 – 0.9 Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypthosis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition.

  13. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean

    KAUST Repository

    Coleman, Richard R.; Eble, Jeffrey A.; DiBattista, Joseph; Rocha, Luiz A.; Randall, John E.; Berumen, Michael L.; Bowen, Brian W.

    2016-01-01

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occupies reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d = 0.006 – 0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographical barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST = 0.066 – 0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7 Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4 Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7 – 0.9 Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypthosis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition.

  14. Comparison of bloat potential between a variety of soft-red versus a variety of hard-red winter wheat forage.

    Science.gov (United States)

    Akins, M S; Kegley, E B; Coffey, K P; Caldwell, J D; Lusby, K S; Moore, J C; Coblentz, W K

    2009-10-01

    Some aspects of wheat pasture bloat have been researched extensively, but few studies have evaluated the effect of wheat type or variety on bloat. Eight Gelbvieh x Angus ruminally cannulated heifers (515 +/- 49 kg of BW) and 48 Angus heifers (238 +/- 12 kg of BW) grazed 1-ha pastures of hard-red or soft-red winter wheat (Triticum aestivum L.) to evaluate the effect of wheat variety on bloat potential. In Exp. 1, cattle grazed from November 11 to 22 and from November 26 to December 7, 2006, in a crossover design. In Exp. 2, cattle were shrunk for 20 h and then grazed from December 19 to 20, 2006, and from January 19 to 20, 2007. In both experiments, bloat was scored at 1000 and 1600 h daily. Rumen samples were collected at 0600, 1200, and 1800 h during each of the last 2 d of each period in Exp. 1 and during both days of each period of Exp. 2. Rumen samples were evaluated for pH, foam production and strength, and viscosity. In Exp. 1, cannulated heifers grazing soft-red had a greater (P bloat (21.9 vs. 5.6%) than those grazing hard-red winter wheat, but bloat incidence was low (2.1%) for the stocker cattle, with no difference between hard-red and soft-red winter wheat (P = 0.52). Viscosity of the rumen fluid was affected (P = 0.03) by the wheat variety x time interaction, with soft-red at 1200 and 1800 h being more viscous than soft-red at 0600 h and hard-red at all times. Foam strength, as determined by bubbling CO(2) gas through rumen fluid, had a wheat variety x time interaction (P = 0.02) with both wheat varieties similar at 0600 h but soft-red having greater foam strength at 1200 and 1800 h. In Exp. 2, no bloat was observed, and no differences between wheat varieties were observed for any of the rumen foam measures. Therefore, for these 2 varieties, the soft-red winter wheat had a greater bloat potential than the hard-red winter wheat based on results from the cannulated heifers, but no differences were observed in the frequency of bloat in stocker cattle. In

  15. Far-red fluorescent probes for canonical and non-canonical nucleic acid structures: current progress and future implications.

    Science.gov (United States)

    Suseela, Y V; Narayanaswamy, Nagarjun; Pratihar, Sumon; Govindaraju, Thimmaiah

    2018-02-05

    The structural diversity and functional relevance of nucleic acids (NAs), mainly deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), are indispensable for almost all living organisms, with minute aberrations in their structure and function becoming causative factors in numerous human diseases. The standard structures of NAs, termed canonical structures, are supported by Watson-Crick hydrogen bonding. Under special physiological conditions, NAs adopt distinct spatial organisations, giving rise to non-canonical conformations supported by hydrogen bonding other than the Watson-Crick type; such non-canonical structures have a definite function in controlling gene expression and are considered as novel diagnostic and therapeutic targets. Development of molecular probes for these canonical and non-canonical DNA/RNA structures has been an active field of research. Among the numerous probes studied, probes with turn-on fluorescence in the far-red (600-750 nm) region are highly sought-after due to minimal autofluorescence and cellular damage. Far-red fluorescent probes are vital for real-time imaging of NAs in live cells as they provide good resolution and minimal perturbation of the cell under investigation. In this review, we present recent advances in the area of far-red fluorescent probes of DNA/RNA and non-canonical G-quadruplex structures. For the sake of continuity and completeness, we provide a brief overview of visible fluorescent probes. Utmost importance is given to design criteria, characteristic properties and biological applications, including in cellulo imaging, apart from critical discussion on limitations of the far-red fluorescent probes. Finally, we offer current and future prospects in targeting canonical and non-canonical NAs specific to cellular organelles, through sequence- and conformation-specific far-red fluorescent probes. We also cover their implications in chemical and molecular biology, with particular focus on decoding various disease

  16. Utilization of red mud and Pb/Zn smelter waste for the synthesis of a red mud-based cementitious material.

    Science.gov (United States)

    Li, Yuan-Cheng; Min, Xiao-Bo; Ke, Yong; Chai, Li-Yuan; Shi, Mei-Qing; Tang, Chong-Jian; Wang, Qing-Wei; Liang, Yan-Jie; Lei, Jie; Liu, De-Gang

    2018-02-15

    A new method in which Pb/Zn smelter waste containing arsenic and heavy metals (arsenic sludge), red mud and lime are utilized to prepare red mud-based cementitious material (RCM) is proposed in this study. XRD, SEM, FTIR and unconfined compressive strength (UCS) tests were employed to assess the physicochemical properties of RCM. In addition, ettringite and iron oxide-containing ettringite were used to study the hydration mechanism of RCM. The results show that the UCS of the RCM (red mud+arsenic sludge+lime) was higher than that of the binder (red mud+arsenic sludge). When the mass ratio of m (binder): m (lime) was 94:6 and then maintained 28days at ambient temperature, the UCS reached 12.05MPa. The red mud has potential cementitious characteristics, and the major source of those characteristics was the aluminium oxide. In the red mud-arsenic sludge-lime system, aluminium oxide was effectively activated by lime and gypsum to form complex hydration products. Some of the aluminium in ettringite was replaced by iron to form calcium sulfoferrite hydrate. The BCR and leaching toxicity results show that the leaching concentration was strongly dependent on the chemical speciation of arsenic and the hydration products. Therefore, the investigated red mud and arsenic sludge can be successfully utilized in cement composites to create a red mud-based cementitious material. Copyright © 2017 Elsevier B.V. All rights reserved.

  17. Possible effects of water pollution on the community structure of Red Sea corals

    Energy Technology Data Exchange (ETDEWEB)

    Loya, Y

    1975-02-28

    The community structure and species diversity of hermatypic corals was studied during 1969 to 1973, in 2 reef flats in the northern Gulf of Eilat, Red Sea: the reef flat of the mature reserve at Eilat, which is chronically polluted by oil and minerals, and a control reef, located 5 km further S, which is free of oil pollution. In 1969, the nature reserve and the control reef had similar coral community structure. In Sept. 1970, both reefs suffered approximately 90 percent mortality of corals, as a result of an unexpected and extremely low tide. In 1973 the control reef was blooming with a highly diverse coral community, while almost no signs of coral recolonization have been observed at the nature reserve, and it is significantly lower in diversity. Phosphate eutrophication and chronic oil pollution are probably the major man-made disturbances that interfere with coral colonization of the reef flat at the nature reserve. Although no direct evidence is provided that oil damages hermatypic corals, the data strongly suggest that chronic oil spills prevent normal settlement and development of coral larvae. Chronic oil pollution results in either one or a combination of the following: damage to the reproductive system of corals, decreased viability of coral larvae, or changes in some physical properties of the reef flat which interfere with normal settlement of coral larvae.

  18. The Red Book through the ages.

    Science.gov (United States)

    Pickering, Larry K; Peter, Georges; Shulman, Stanford T

    2013-11-01

    The first edition of the Red Book was published in 1938. Since then, there have been numerous advances in the fields of infectious diseases and public health that have decreased morbidity and mortality of infants, children, and adolescents. Over the years, emerging pathogens and disease complexes have been described, sophisticated diagnostic techniques developed, advances in antimicrobial therapy have occurred, and immunizations have been implemented to prevent previously deadly diseases. Of the 18 diseases or organisms in the 1938 edition, 13 are now vaccine-preventable. Since inception of the Red Book, the aims of the editors have been to keep pace with these innovations and to continue to inform the medical community. These goals have made the Red Book a fundamental resource for pediatricians and other health care professionals in terms of guiding diagnosis, therapy, and prevention of infectious diseases. The list of 18 diseases or organisms originally described in the 1938 Red Book has expanded to include over 160 diseases or organisms in the 2012 edition. The pace of biomedical discovery, as well as the amount of information available and the number of methods for its delivery, will continue to accelerate in the future. Integration of information into future editions of the Red Book will ensure that practitioners continue to rely on the Red Book in its various electronic formats for clinical guidance and support.

  19. Increasing crop diversity mitigates weather variations and improves yield stability.

    Science.gov (United States)

    Gaudin, Amélie C M; Tolhurst, Tor N; Ker, Alan P; Janovicek, Ken; Tortora, Cristina; Martin, Ralph C; Deen, William

    2015-01-01

    Cropping sequence diversification provides a systems approach to reduce yield variations and improve resilience to multiple environmental stresses. Yield advantages of more diverse crop rotations and their synergistic effects with reduced tillage are well documented, but few studies have quantified the impact of these management practices on yields and their stability when soil moisture is limiting or in excess. Using yield and weather data obtained from a 31-year long term rotation and tillage trial in Ontario, we tested whether crop rotation diversity is associated with greater yield stability when abnormal weather conditions occur. We used parametric and non-parametric approaches to quantify the impact of rotation diversity (monocrop, 2-crops, 3-crops without or with one or two legume cover crops) and tillage (conventional or reduced tillage) on yield probabilities and the benefits of crop diversity under different soil moisture and temperature scenarios. Although the magnitude of rotation benefits varied with crops, weather patterns and tillage, yield stability significantly increased when corn and soybean were integrated into more diverse rotations. Introducing small grains into short corn-soybean rotation was enough to provide substantial benefits on long-term soybean yields and their stability while the effects on corn were mostly associated with the temporal niche provided by small grains for underseeded red clover or alfalfa. Crop diversification strategies increased the probability of harnessing favorable growing conditions while decreasing the risk of crop failure. In hot and dry years, diversification of corn-soybean rotations and reduced tillage increased yield by 7% and 22% for corn and soybean respectively. Given the additional advantages associated with cropping system diversification, such a strategy provides a more comprehensive approach to lowering yield variability and improving the resilience of cropping systems to multiple environmental

  20. Lógicas para la red

    Directory of Open Access Journals (Sweden)

    Antonia HUERTAS

    2009-09-01

    Full Text Available RESUMEN: Tim Berners-Lee y sus colegas del World Wide Web Consortium (W3C llamaron «Semantic Web» al que sería el siguiente estadio de desarrollo de la red (inevitablemente traducido al castellano como Web Semántica. La idea detrás de esta evolución de la red es extender con metadatos y reglas lógicas la red basada en el lenguaje html, con el objetivo de que la infraestructura resultante permita a las máquinas entender los datos de la red de la misma forma que los entendemos los humanos. Así, añadir lógica a la red permitiría a los ordenadores tomar decisiones, hacer inferencias y responder preguntas. En este texto se pretende revisar las lógicas que han sido propuestas para permitir esta nueva web inteligente y repasar las cuestiones teóricas y pragmáticas más importantes de la corta pero intensa historia de las lógicas para la red.ABSTRACT: Tim Berners-Lee and their colleagues of the World Wide Web Consortium (W3C called «Semantic Web» the next development of the Web. The idea behind this evolution of the Web is to extend the present network based on the HTML language with metadata and logical rules, with the aim of the resulting infrastructure allowing machines to understand Web data in the same way that human beings understand them. Thus, adding logic to the Web would allow the computers to take decisions, to do inferences and to answer questions. In this paper it is intended to revise the logics that have been suggested to allow this new intelligent Web and to revise the most important theoretical and pragmatic questions of the short but intense history of logics for the Web.

  1. Associations between red meat and risks for colon and rectal cancer depend on the type of red meat consumed.

    Science.gov (United States)

    Egeberg, Rikke; Olsen, Anja; Christensen, Jane; Halkjær, Jytte; Jakobsen, Marianne Uhre; Overvad, Kim; Tjønneland, Anne

    2013-04-01

    Cancer prevention guidelines recommend limiting intake of red meat and avoiding processed meat; however, few studies have been conducted on the effects of specific red meat subtypes on colon cancer or rectal cancer risk. The study aim was to evaluate associations between intake of red meat and its subtypes, processed meat, fish, and poultry and risk for colon cancer or rectal cancer in the Danish Diet, Cancer and Health cohort study. We also evaluated whether fish or poultry should replace red meat intake to prevent colon cancer or rectal cancer. During follow-up (13.4 y), 644 cases of colon cancer and 345 cases of rectal cancer occurred among 53,988 participants. Cox proportional hazards models were used to compute incidence rate ratio (IRRs) and 95% CIs. No associations were found between intake of red meat, processed meat, fish, or poultry and risk for colon cancer or rectal cancer. The risk associated with specific red meat subtypes depended on the animal of origin and cancer subsite; thus, the risk for colon cancer was significantly elevated for higher intake of lamb [IRR(per 5g/d) = 1.07 (95% CI: 1.02-1.13)], whereas the risk for rectal cancer was elevated for higher intake of pork [IRR(per 25g/d) = 1.18 (95% CI: 1.02-1.36)]. Substitution of fish for red meat was associated with a significantly lower risk for colon cancer [IRR(per 25g/d) = 0.89 (95% CI: 0.80-0.99)] but not rectal cancer. Substitution of poultry for red meat did not reduce either risk. This study suggests that the risks for colon cancer and potentially for rectal cancer differ according to the specific red meat subtype consumed.

  2. Analyses between Reproductive Behaviour, Genetic Diversity and Pythium Responsiveness in Zingiber spp. reveal an adaptive significance for hemiclonality

    Directory of Open Access Journals (Sweden)

    Geethu Elizabath Thomas

    2016-12-01

    Full Text Available AbstractMode of reproduction is generally considered to have long-range evolutionary implications on population survival. Because sexual reproduction produces genetically diverse genotypes, this mode of reproduction is predicted to positively influence the success potential of offspring in evolutionary arms race with parasites (Red queen whereas, without segregation and recombination, the obligate asexual multiplication may push a species into extinction due to the steady accumulation of deleterious mutations (Muller’s ratchet. However, the extent of linearity between reproductive strategies, genetic diversity and population fitness, and the contributions of different breeding strategies to population fitness are yet to be understood clearly. Genus Zingiber belonging to the pan-tropic family Zingiberaceae represents a good system to study contributions of different breeding behaviour on genetic diversity and population fitness, as this genus comprises species with contrasting breeding systems. In this study, we analyzed breeding behaviour, amplified fragment length polymorphism (AFLP diversity and response to the soft-rot pathogen Pythium aphanidermatum in 18 natural populations of three wild Zingiber spp.: Z. neesanum, Z. nimmonii and Z. zerumbet, together with the obligately asexual cultivated congener, ginger (Z. officinale. Ginger showed an exceptionally narrow genetic base, and adding to this, all the tested cultivars were uniformly susceptible to soft-rot. Concordant with the postulates of Muller’s ratchet, the background selection may be continuously pushing ginger into the ancestral state, rendering it inefficient in host-pathogen coevolution. Z. neesanum and Z. nimmonii populations were sexual and genetically diverse; however, contrary to Red Queen expectations, the populations were highly susceptible to soft-rot. Z. zerumbet showed a hemiclonal breeding behaviour. The populations inhabiting forest understory were large and

  3. Regulation of Picea abies seed dormancy by red and far-red light at various moisture contents

    Energy Technology Data Exchange (ETDEWEB)

    Leinonen, K.; Chantal, M. de [Helsinki Univ. (Finland). Dept. of Forest Ecology

    1998-04-01

    The effects of red (R), far-red (FR) and R+FR light on Norway spruce seed dormancy were studied at five different moisture contents (MC) between 5 and 20%. The degree of dormancy was studied by germinating seeds over a wide range of temperatures in the dark. The non-irradiated control seeds were shallowly dormant, only a proportion of them germinated and within a limited temperature range. Red light progressively stimulated germination between 5 and 17% MC, but this effect was reversed if a FR treatment followed, although all germination could not be inhibited by one FR pulse. Far-red light had a slightly stimulating effect at 19% MC. To generate seeds able to germinate over a wide range of temperatures in darkness, an artificial light pretreatment should be given to seeds at MC above 17% in order to receive maximum response 24 refs, 2 figs, 1 tab

  4. Consistent variability in beta-diversity patterns contrasts with changes in alpha-diversity along an onshore to offshore environmental gradient: the case of Red Sea soft-bottom macrobenthos

    KAUST Repository

    Alsaffar, Zahra Hassan Ali; Curdia, Joao; Borja, Angel; Irigoien, Xabier; Carvalho, Susana

    2017-01-01

    . These findings suggest that mechanisms driving biodiversity are similar across the depth gradient. The partitioning of beta-diversity also show that assemblages are mainly driven by the substitution of species (turnover or replacement), most likely as a result

  5. Effect of Red Pepper (Capsicum frutescens) Powder or Red Pepper Pigment on the Performance and Egg Yolk Color of Laying Hens.

    Science.gov (United States)

    Li, Huaqiang; Jin, Liji; Wu, Feifei; Thacker, Philip; Li, Xiaoyu; You, Jiansong; Wang, Xiaoyan; Liu, Sizhao; Li, Shuying; Xu, Yongping

    2012-11-01

    Two experiments were conducted to study the effects of red pepper (Capsicum frutescens) powder or red pepper pigment on the performance and egg yolk color of laying hens. In Exp. 1, 210, thirty-wk old, Hy-line Brown laying hens were fed one of seven diets containing 0.3, 0.6, 1.2, 2.0, 4.8 or 9.6 ppm red pepper pigment or 0.3 ppm carophyll red. Each diet was fed to three replicate batteries of hens with each battery consisting of a row of five cages of hens with two hens per cage (n = 3). In Exp. 2, 180, thirty-wk old, Hyline Brown laying hens, housed similarly to those in Exp. 1, were fed an unsupplemented basal diet as well as treatments in which the basal diet was supplemented with 0.8% red pepper powder processed in a laboratory blender to an average particle size of 300 μm, 0.8% red pepper powder processed as a super fine powder with a vibrational mill (44 μm) and finally 0.8% red pepper powder processed as a super fine powder with a vibrational mill but mixed with 5% Na2CO3 either before or after grinding. A diet supplemented with 0.3 ppm carophyll red pigment was also included (n = 3). In both experiments, hens were fed the red pepper powder or pigment for 14 days. After feeding of the powder or pigment was terminated, all hens were fed the basal diet for eight more days to determine if the dietary treatments had any residual effects. In Exp. 1, there were no differences in egg-laying performance, feed consumption or feed conversion ratio due to inclusion of red pepper pigment in the diet. Average egg weight was higher (pfeeding red pepper powder did not affect egg-laying performance, feed consumption or feed conversion ratio (p>0.05). However, compared with the control group, supplementation with all of the red pepper powder treatments increased egg weight (pfeed additives for improving egg yolk color for laying hens.

  6. Site-Specific Variability in the Chemical Diversity of the Antarctic Red Alga Plocamium cartilagineum

    Directory of Open Access Journals (Sweden)

    Ryan M. Young

    2013-06-01

    Full Text Available Plocamium cartilagineum is a common red alga on the benthos of Antarctica and can be a dominant understory species along the western Antarctic Peninsula. Algae from this region have been studied chemically, and like “P. cartilagineum” from other worldwide locations where it is common, it is rich in halogenated monoterpenes, some of which have been implicated as feeding deterrents toward sympatric algal predators. Secondary metabolites are highly variable in this alga, both qualitatively and quantitatively, leading us to probe individual plants to track the possible link of variability to genetic or other factors. Using cox1 and rbcL gene sequencing, we find that the Antarctic alga divides into two closely related phylogroups, but not species, each of which is further divided into one of five chemogroups. The chemogroups themselves, defined on the basis of Bray-Curtis similarity profiling of GC/QqQ chromatographic analyses, are largely site specific within a 10 km2 area. Thus, on the limited geographical range of this analysis, P. cartilagineum displays only modest genetic radiation, but its secondary metabolome was found to have experienced more extensive radiation. Such metabogenomic divergence demonstrated on the larger geographical scale of the Antarctic Peninsula, or perhaps even continent-wide, may contribute to the discovery of cryptic speciation.

  7. Antimicrobial and Anti-biofilm Activities of Betacyanin Fractions from Red Pitahaya (Hylocereus polyrhizus) and Red Spinach (Amaranthus dubius)

    OpenAIRE

    YI YI YONG

    2018-01-01

    This thesis examines the ability of betacyanin, a natural red-violet pigment from red pitahaya (Hylocereus polyrhizus) and red spinach (Amaranthus dubius)in inhibiting the growth of bacteria that cause diseases and bacteria attached to surfaces such as glass, polystyrene, polyvinyl chloride, polyethylene, polypropylene, and silicone rubber. Extraction was optimized to produce a betacyanin fraction and various assays were carried out to identify the best betacyanin formulation against a polymi...

  8. Red squirrels from south–east Iberia: low genetic diversity at the southernmost species distribution limit

    Directory of Open Access Journals (Sweden)

    Lucas, J. M.

    2015-05-01

    Full Text Available South–east Iberia is the southernmost limit of this species in Europe. Squirrels in the region mainly inhabit coniferous forests of Pinus. In this study, we analyzed the pattern of mitochondrial genetic variation of southern Iberian red squirrels. Fragments of two mitochondrial genes, a 350–base pair of the displacement loop (D–loop and a 359–bp of the cytochrome b (Cytb, were sequenced using samples collected from 88 road–kill squirrels. The genetic variation was low, possibly explained by a recent bottleneck due to historical over–exploitation of forest resources. Habitat loss and fragmentation caused by deforestation and geographic isolation may explain the strong genetic subdivision between the study regions. Six new haplotypes for the D–loop and two new haplotypes for the Cytb fragments are described. A Cytb haplotype of south–east Iberia was found to be present in Albania and Japan, suggesting local extinction of this haplotype in intermediate areas. No significant clustering was found for the south–east of Spain or for the other European populations (except Calabria in the phylogenetic analysis.

  9. Biochemical and functional characterization of AcUFGT3a, a galactosyltransferase involved in anthocyanin biosynthesis in the red-fleshed kiwifruit (Actinidia chinensis).

    Science.gov (United States)

    Liu, Yanfei; Zhou, Bin; Qi, Yingwei; Liu, Cuihua; Liu, Zhande; Ren, Xiaolin

    2018-04-01

    Much of the diversity of anthocyanin pigmentation in plant tissues is due to the action of glycosyltransferases, which attach sugar moieties to the anthocyanin aglycone. This step can increase both their solubility and stability. We investigated the pigmentation of the outer and inner pericarps of developing fruits of the red-fleshed kiwifruit Actinidia chinensis cv. 'Hongyang'. The results show that the red color of the inner pericarp is due to anthocyanin. Based on expression analyses of structural genes, AcUFGT was shown to be the key gene involved in the anthocyanin biosynthetic pathway. Expression of AcUFGT in developing fruit paralleled changes in anthocyanin concentration. Thirteen putative UFGT genes, including different transcripts, were identified in the genome of 'Hongyang'. Among these, only the expression of AcUFGT3a was found to be highly consistent with anthocyanin accumulation. Fruit infiltrated with virus-induced gene silencing showed delayed red colorations, lower anthocyanin contents and lower expressions of AcUFGT3a. At the same time, transient overexpression of AcUFGT3a in both Actinidia arguta and green apple fruit resulted in higher anthocyanin contents and deeper red coloration. In vitro biochemical assays revealed that recombinant AcUFGT3a recognized only anthocyanidins as substrate but not flavonols. Also, UDP-galactose was used preferentially as the sugar donor. These results indicate AcUFGT3a is the key enzyme regulating anthocyanin accumulation in red-fleshed kiwifruit. © 2017 Scandinavian Plant Physiology Society.

  10. Brazilian red propolis: phytochemical screening, antioxidant activity and effect against cancer cells.

    Science.gov (United States)

    de Mendonça, Izabel Cristina Gomes; Porto, Isabel Cristina Celerino de Moraes; do Nascimento, Ticiano Gomes; de Souza, Naiana Soares; Oliveira, José Marcos dos Santos; Arruda, Rodolfo Elleson dos Santos; Mousinho, Kristiana Cerqueira; dos Santos, Aldenir Feitosa; Basílio-Júnior, Irinaldo Diniz; Parolia, Abhishek; Barreto, Francisco Stefânio

    2015-10-14

    The implementation of new public healthcare models that stimulate the use of natural products from traditional medicine, as a so-called integrated medicine, refers to an approach that use best of both conventional medicine and traditional medicine. Propolis is a widely used natural product by different ancient cultures and known to exhibit biological activities beneficial for health. The large number of studies conducted with propolis had shown that its chemical composition differs as a function of the climate, plant diversity and bee species and plays an important role on its therapeutic properties. The aim of this study was to analyse the phytochemical profile of the ethanolic extract of red propolis (EEP) and its fractionation, antioxidant action of EEP and its fractions hexane, cloroform and ethyl acetate and cytotoxic activity of EEP on human tumour cell lines SF-295 (glioblastoma), OVCAR-8 (ovary) and HCT-116 (colon). EEP was obtained by maceration with absolute ethanol, then it was concentrated in rotaevaporator up to complete evaporation of the solvent. The crude extract was fractionated with hexane, ethyl acetate, chloroform and methanol and they were subjected to phytochemical screening and total phenolic compounds. Antioxidant activity of EEP and fractions was done by means of the 2,2-diphenyl-1-picryhydrazyl (DPPH) method. Biomarkers of red propolis were identified by LC-Orbitrap-FTMS. To assess cytotoxic activity of the extract, cells were exposed to EEP over 72 h. Cell viability was assessed by means of MTT assay. The percentage of cell growth inhibition (IC50) was analysed by means of non-linear regression, and the absorbance values of the various investigated concentrations were subjected to one-factor analysis of variance (ANOVA) followed by Tukey's or Tamhane's tests (α = 0.05). The results obtained using phytochemical screening and LC-Orbitrap-FTMS indicated the presence of phlobaphene tannins, catechins, chalcones, aurones, flavonones

  11. Long-term organic-inorganic fertilization ensures great soil productivity and bacterial diversity after natural-to-agricultural ecosystem conversion.

    Science.gov (United States)

    Xun, Weibing; Xu, Zhihui; Li, Wei; Ren, Yi; Huang, Ting; Ran, Wei; Wang, Boren; Shen, Qirong; Zhang, Ruifu

    2016-09-01

    Natural ecosystems comprise the planet's wild plant and animal resources, but large tracts of land have been converted to agroecosystems to support the demand for agricultural products. This conversion limits the number of plant species and decreases the soil biological diversity. Here we used high-throughput 16S rRNA gene sequencing to evaluate the responses of soil bacterial communities in long-term converted and fertilized red soils (a type of Ferralic Cambisol). We observed that soil bacterial diversity was strongly affected by different types of fertilization management. Oligotrophic bacterial taxa demonstrated large relative abundances in chemically fertilized soil, whereas copiotrophic bacterial taxa were found in large relative abundances in organically fertilized and fallow management soils. Only organic-inorganic fertilization exhibited the same local taxonomic and phylogenetic diversity as that of a natural ecosystem. However, the independent use of organic or inorganic fertilizer reduced local taxonomic and phylogenetic diversity and caused biotic homogenization. This study demonstrated that the homogenization of bacterial communities caused by natural-to-agricultural ecosystem conversion can be mitigated by employing rational organic-inorganic fertilization management.

  12. Pterocarpus santalinus (Red Sanders an Endemic, Endangered Tree of India: Current Status, Improvement and the Future

    Directory of Open Access Journals (Sweden)

    AN Arunkumar

    2014-12-01

    Full Text Available Pterocarpus santalinus (Family – Fabaceae popularly known as Red Sanders is an endemic species confined to Southern parts of Eastern Ghats of India specially in Andhra Pradesh. Heartwood of Red Sanders has high demand in domestic as well as international market and the wavy grained wood is valued.  Along with its extensive use in furniture, the red dye obtained from the wood is used as colouring agent for textile, medicine and food. The heartwood can accumulate various elements and rare earth elements like strontium cadmium, zinc, copper and uranium. The wood has different uses in traditional and folklore medicines and is used for the treatment of diabetes, prickly heat, skin diseases and for various other ailments. A number of studies have been carried out to anatomically and phenotypicaly screen wavy grain at seedling stage. Morphological variability and genetic diversity studies reveal that Red Sanders harbours enormous variability. Though, macro and micro propagation protocol have been developed, further refinement is required for mass propagation. Andhra Pradesh Forest Department has also initiated different activities under tree improvement programme. Considering the wood demand, restricted distribution, slow regeneration, illegal harvest, trade and habitat destruction, the species has been categorized as endangered by International Union for Conservation of Nature and has been listed in Convention on International Trade in Endangered Species of Wild Fauna and Flora and is also classified as a “reserved tree” under the Andhra Pradesh Preservation of Private Forest Rules, 1978. To revive the past glory of this valuable species, Government agencies, farmers, entrepreneurs and policy makers have to join hands for its protection, sustainable utilization and conservation.

  13. Comparative metagenomics of the Red Sea

    KAUST Repository

    Mineta, Katsuhiko

    2016-01-26

    Metagenome produces a tremendous amount of data that comes from the organisms living in the environments. This big data enables us to examine not only microbial genes but also the community structure, interaction and adaptation mechanisms at the specific location and condition. The Red Sea has several unique characteristics such as high salinity, high temperature and low nutrition. These features must contribute to form the unique microbial community during the evolutionary process. Since 2014, we started monthly samplings of the metagenomes in the Red Sea under KAUST-CCF project. In collaboration with Kitasato University, we also collected the metagenome data from the ocean in Japan, which shows contrasting features to the Red Sea. Therefore, the comparative metagenomics of those data provides a comprehensive view of the Red Sea microbes, leading to identify key microbes, genes and networks related to those environmental differences.

  14. Far red bioluminescence from two deep-sea fishes.

    Science.gov (United States)

    Widder, E A; Latz, M I; Herring, P J; Case, J F

    1984-08-03

    Spectral measurements of red bioluminescence were obtained from the deep-sea stomiatoid fishes Aristostomias scintillans (Gilbert) and Malacosteus niger (Ayres). Red luminescence from suborbital light organs extends to the near infrared, with peak emission at approximately 705 nanometers in the far red. These fishes also have postorbital light organs that emit blue luminescence with maxima between 470 and 480 nanometers. The red bioluminescence may be due to an energy transfer system and wavelength-selective filtering.

  15. RED ONE kuvaajan työkaluna

    OpenAIRE

    Käki, Ossi

    2010-01-01

    Opinnäytetyöni projektiosa, 30-minuuttinen lyhytelokuva Huomisen Muisto – Memory of Tomorrow kuvattiin RED ONE -kameralla vuosina 2008-2009. Opinnäytetyöni kirjallinen osuus tutkii miten RED ONE soveltuu kuvaajan työvälineeksi lyhytelokuvassa. Huomisen Muisto oli ensimmäinen Tampereen ammattikorkeakoulussa RED ONE:lla kuvattu elokuva ja koko tekninen workflow piti kehittää lähes nollasta. Paljon kuvan digitaalista jälkikäsittelyä sisältävänä science fiction -elokuvana Huomisen Muisto asetti i...

  16. Comparative metagenomics of the Red Sea

    KAUST Repository

    Mineta, Katsuhiko

    2016-01-01

    started monthly samplings of the metagenomes in the Red Sea under KAUST-CCF project. In collaboration with Kitasato University, we also collected the metagenome data from the ocean in Japan, which shows contrasting features to the Red Sea. Therefore

  17. Red Emitting Phenyl-Polysiloxane Based Scintillators for Neutron Detection

    International Nuclear Information System (INIS)

    Dalla Palma, Matteo; Quaranta, Alberto; Marchi, Tommaso; Gramegna, Fabiana; Cinausero, Marco; Carturan, Sara; Collazuol, Gianmaria

    2013-06-01

    In this work, the performances of new red emitting phenyl- substituted polysiloxane based scintillators are described. Three dyes were dispersed in a phenyl-polysiloxane matrix in order to shift the scintillation wavelength towards the red part of the visible spectrum. PPO, Lumogen Violet (BASF) and Lumogen Red (BASF) were mixed to the starting resins with different wt. % and the analysis of the different samples was performed by means of fluorescence measurements. The scintillation yield to alpha particles at the different dye ratios was monitored by detecting either the full spectrum or the red part of the emitted light. Finally, thin red scintillators with selected compositions were coupled to Avalanche Photodiode sensors, which are usually characterized by higher efficiency in the red part of the spectrum. An increased light output of about 17% has been obtained comparing the red scintillators to standard blue emitting systems. Preliminary results on the detection of fast neutrons with the APD-red scintillator system are also presented. (authors)

  18. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.

    Science.gov (United States)

    Coleman, Richard R; Eble, Jeffrey A; DiBattista, Joseph D; Rocha, Luiz A; Randall, John E; Berumen, Michael L; Bowen, Brian W

    2016-07-01

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occurs on reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d=0.006-0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographic barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST=0.066-0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7-0.9Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypothesis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition. We recommend P.d. diacanthus and P.d. flavescens for the Pacific and Indian Ocean/Red Sea forms. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. Volume tables for red alder.

    Science.gov (United States)

    Floyd A. Johnson; R. M. Kallander; Paul G. Lauterbach

    1949-01-01

    The increasing importance of red alder as a commercial species in the Pacific Northwest has prompted the three agencies listed above to pool their tree measurement data for the construction of standard regional red alder volume tables. The tables included here were based on trees from a variety of sites and form classes. Approximately one quarter of the total number of...

  20. Skeleton decay in red cedar

    Science.gov (United States)

    Kevin T. Smith; Jessie A. Glaeser

    2013-01-01

    Eastern red cedar (Juniperus virginiana) is a common tree species throughout the eastern United States and the Great Plains. Although “cedar” is in the common name, the scientifc name shows a botanical kinship to the juniper species of the American southwest. Red cedar can survive and thrive within a broad range of soil conditions, seasonal...

  1. Intercropped red beet and radish with green bean affected microbial communities and nodulation by indigenous rhizobia

    Directory of Open Access Journals (Sweden)

    Milan Ugrinovic

    2014-10-01

    Full Text Available The impact of intercropping green bean (Phaseolus vulgaris L. with red beet (Beta vulgaris L. var. rubra and radish (Raphanus sativus L., two non-legume plants, on the plants’ yields, as well as the effect on occurrence and enumeration of microorganisms in the rhizosphere was studied. The intercrop efficacy evaluation, using Land equivalent ratio, revealed values above 1.0 for all intercropped treatments. Diversity of rhizobia from green bean nodules under different intercropping and fertilizing conditions was observed. On the basis of morphological and biochemical characteristics, 67 out of 158 isolates from green bean roots were selected as rhizobia (42.4%, confirmed by detection of 780 bp nifH gene fragments in nifH-PCR, and then clustered in 27 phenotype patterns. Production of exopolysaccharide succinoglycan was observed in 23 rhizobial isolates, while 6 were detected to solubilize tricalcium phosphate. Screening of genetic diversity using (GTG5-PCR fingerprinting showed presence of six different patterns on the 92% similarity level.

  2. DAVs: Red Edge and Outbursts

    Science.gov (United States)

    Luan, Jing

    2018-04-01

    As established by ground based surveys, white dwarfs with hydrogen atmospheres pulsate as they cool across the temperature range, 12500Kred edge is a two-decade old puzzle. Recently, Kepler discovered a number of cool DAVs exhibiting sporadic outbursts separated by days, each lasting several hours, and releasing \\sim 10^{33}-10^{34} {erg}. We provide quantitative explanations for both the red edge and the outbursts. The minimal frequency for overstable modes rises abruptly near the red edge. Although high frequency overstable modes exist below the red edge, their photometric amplitudes are generally too small to be detected by ground based observations. Nevertheless, these overstable parent modes can manifest themselves through nonlinear mode couplings to damped daughter modes which generate limit cycles giving rise to photometric outbursts.

  3. Wide-ranging phylogeographic structure of invasive red lionfish in the Western Atlantic and Greater Caribbean

    Science.gov (United States)

    Butterfield, John S.; Díaz-Ferguson, Edgardo; Silliman, Brian R.; Saunders, Jonathan W.; Buddo, Dayne; Mignucci-Giannoni, Antonio A.; Searle, Linda; Allen, Aarin Conrad; Hunter, Margaret E.

    2015-01-01

    The red lionfish (Pterois volitans) is an invasive predatory marine fish that has rapidly expanded its presence in the Western Hemisphere. We collected 214 invasive red lionfish samples from nine countries and territories, including seven unpublished locations. To more comprehensively evaluate connectivity, we compiled our d-loop sequence data with 846 published sequences, resulting in 1,060 samples from 14 locations. We found low nucleotide diversity (π = 0.003) and moderate haplotype diversity (h = 0.59). Using haplotype population pairwise ΦST tests, we analyzed possible phylogeographic breaks that were previously proposed based on other reef organisms. We found support for the Bahamas/Turks/Caicos versus Caribbean break (ΦST = 0.12) but not for the Northwestern Caribbean, Eastern Caribbean, or US East Coast versus Bahamas breaks. The Northern Region had higher variation and more haplotypes, supporting introductions of at least five haplotypes to the region. Our wide-ranging samples showed that a lower-frequency haplotype in the Northern Region dominated the Southern Region and suggested multiple introductions, possibly to the south. We tested multiple scenarios of phylogeographic structure with analyses of molecular variance and found support for a Northern and Southern Region split at the Bahamas/Turks/Caicos versus Caribbean break (percentage of variation among regions = 8.49 %). We found that Puerto Rico clustered with the Southern Region more strongly than with the Northern Region, as opposed to previous reports. We also found the rare haplotype H03 for the first time in the southern Caribbean (Panama), indicating that either secondary releases occurred or that the low-frequency haplotypes have had time to disperse to extreme southern Caribbean locations.

  4. Experience Reverses the Red Effect among Chinese Stockbrokers

    OpenAIRE

    Zhang, Tengxiao; Han, Buxin

    2014-01-01

    Recent research has shown that the color red influences psychological functioning. Red is hypothesized to be linked to aggression and danger in evolution, and these links are enhanced by culture-specific uses of red. Thus, color meanings are thought to be grounded in biologically based proclivities and learned associations. However, to date, there has been no direct evidence for the influence of experience on the red effect. This study focused on whether experience could change the psychologi...

  5. The Lassen Astrobiology Intern Program - Concept, Implementation and Evaluation

    Science.gov (United States)

    Des Marais, D. J.; Dueck, S. L.; Davis, H. B.; Parenteau, M. N.; Kubo, M. D.

    2014-12-01

    The program goal was to provide a hands-on astrobiology learning experience to high school students by introducing astrobiology and providing opportunities to conduct field and lab research with NASA scientists. The program sought to increase interest in interdisciplinary science, technology, engineering, math and related careers. Lassen Volcanic National Park (LVNP), Red Bluff High School and the Ames Team of the NASA Astrobiology Institute led the program. LVNP was selected because it shares aspects of volcanism with Mars and it hosts thermal springs with microbial mat communities. Students documented volcanic deposits, springs and microbial mats. They analyzed waters and sampled rocks, water and microorganisms. They cultured microorganisms and studied chemical reactions between rocks and simulated spring waters. Each student prepared a report to present data and discuss relationships between volcanic rocks and gases, spring waters and microbial mats. At a "graduation" event the students presented their findings to the Red Bluff community. They visited Ames Research Center to tour the facilities and learn about science and technology careers. To evaluate program impact, surveys were given to students after lectures, labs, fieldwork and discussions with Ames scientists. Students' work was scored using rubrics (labs, progress reports, final report, presentation). Students took pre/post tests on core astrobiology concepts. Parents, teachers, rangers, Ames staff and students completed end-of-year surveys on program impact. Several outcomes were documented. Students had a unique and highly valued learning experience with NASA scientists. They understood what scientists do through authentic scientific work, and what scientists are like as individuals. Students became knowledgeable about astrobiology and how it can be pursued in the lab and in the field. The students' interest increased markedly in astrobiology, interdisciplinary studies and science generally.

  6. Abnormal red cell structure and function in neuroacanthocytosis.

    Directory of Open Access Journals (Sweden)

    Judith C A Cluitmans

    Full Text Available Panthothenate kinase-associated neurodegeneration (PKAN belongs to a group of hereditary neurodegenerative disorders known as neuroacanthocytosis (NA. This genetically heterogeneous group of diseases is characterized by degeneration of neurons in the basal ganglia and by the presence of deformed red blood cells with thorny protrusions, acanthocytes, in the circulation.The goal of our study is to elucidate the molecular mechanisms underlying this aberrant red cell morphology and the corresponding functional consequences. This could shed light on the etiology of the neurodegeneration.We performed a qualitative and semi-quantitative morphological, immunofluorescent, biochemical and functional analysis of the red cells of several patients with PKAN and, for the first time, of the red cells of their family members.We show that the blood of patients with PKAN contains not only variable numbers of acanthocytes, but also a wide range of other misshapen red cells. Immunofluorescent and immunoblot analyses suggest an altered membrane organization, rather than quantitative changes in protein expression. Strikingly, these changes are not limited to the red blood cells of PKAN patients, but are also present in the red cells of heterozygous carriers without neurological problems. Furthermore, changes are not only present in acanthocytes, but also in other red cells, including discocytes. The patients' cells, however, are more fragile, as observed in a spleen-mimicking device.These morphological, molecular and functional characteristics of red cells in patients with PKAN and their family members offer new tools for diagnosis and present a window into the pathophysiology of neuroacanthocytosis.

  7. Cell fusion phenomena detected after in utero transplantation of Ds-red-harboring porcine amniotic fluid stem cells into EGFP transgenic mice.

    Science.gov (United States)

    Peng, Shao-Yu; Chen, Yu-Hsu; Chou, Chih-Jen; Wang, Yao-Horng; Lee, Hung-Maan; Cheng, Winston Teng-Kui; Shaw, S W Steven; Wu, Shinn-Chih

    2014-05-01

    Amniotic fluid stem cells (AFSCs) are derived from the amniotic fluid of the developing fetus and can give rise to diverse differentiated cells of ectoderm, mesoderm, and endoderm lineages. Intrauterine transplantation is an approach used to cure inherited genetic fetal defects during the gestation period of pregnant dams. Certain disease such as osteogenesis imperfecta was successfully treated in affected fetal mice using this method. However, the donor cell destiny remains uncertain. The purpose of this study was to investigate the biodistribution and cell fate of Ds-red-harboring porcine AFSCs (Ds-red pAFSCs) after intrauterine transplantation into enhanced green fluorescent protein-harboring fetuses of pregnant mice. Pregnant mice (12.5 days) underwent open laparotomy with intrauterine pAFSC transplantation (5 × 10(4) cells per pup) into fetal peritoneal cavity. Three weeks after birth, the mice were sacrificed. Several samples from different organs were obtained for histological examination and flow cytometric analysis. Ds-red pAFSCs migrated most frequently into the intestines. Furthermore, enhanced green fluorescent protein and red fluorescent protein signals were co-expressed in the intestine and liver cells via immunohistochemistry studies. In utero xenotransplantation of pAFSCs fused with recipient intestinal cells instead of differentiating or maintaining the undifferentiated status in the tissue. © 2014 John Wiley & Sons, Ltd.

  8. Doppler interpretation of quasar red shifts.

    Science.gov (United States)

    Zapolsky, H S

    1966-08-05

    The hypothesis that the quasistellar sources (quasars) are local objects moving with velocities close to the speed of light is examined. Provided there is no observational cutoff on apparent bolometric magnitude for the quasars, the transverse Doppler effect leads to the expectation of fewer blue shifts than red shifts for an isotropic distribution of velocities. Such a distribution also yields a function N(z), the number of objects with red shift less than z which is not inconsistent with the present data. On the basis of two extreme assumptions concerning the origin of such rapidly moving sources, we computed curves of red shift plotted against magnitude. In particular, the curve obtained on the assumption that the quasars originated from an explosion in or nearby our own galaxy is in as good agreement with the observations as the curve of cosmological red shift plotted against magnitude.

  9. Red Wine Polyphenols for Cancer Prevention

    Science.gov (United States)

    He, Shan; Sun, Cuirong; Pan, Yuanjiang

    2008-01-01

    Conventional cancer therapies, the second leading cause of death worldwide, result in serious side effects and, at best, merely extend the patient's lifespan by a few years. Searching for effective prevention is of high priority in both basic and clinical sciences. In recent decades natural products have been considered to be an important source of cancer chemopreventive agents. Red wine polyphenols, which consisted of various powerful antioxidants such as flavonoids and stilbenes, have been implicated in cancer prevention and that promote human health without recognizable side effects. Since resveratrol, a major component of red wine polyphenols, has been studied and reviewed extensively for its chemopreventive activity to interfere with the multi-stage carcinogenesis, this review focuses on recent progress in studies on cancer chemopreventive activities of red wine polyphenol extracts and fractions as well as other red wine polyphenols, like procyanidin B5 analogues and myricetin. PMID:19325788

  10. Red Wine Polyphenols for Cancer Prevention

    Directory of Open Access Journals (Sweden)

    Yuanjiang Pan

    2008-05-01

    Full Text Available Conventional cancer therapies, the second leading cause of death worldwide, result in serious side effects and, at best, merely extend the patient's lifespan by a few years. Searching for effective prevention is of high priority in both basic and clinical sciences. In recent decades natural products have been considered to be an important source of cancer chemopreventive agents. Red wine polyphenols, which consisted of various powerful antioxidants such as flavonoids and stilbenes, have been implicated in cancer prevention and that promote human health without recognizable side effects. Since resveratrol, a major component of red wine polyphenols, has been studied and reviewed extensively for its chemopreventive activity to interfere with the multi-stage carcinogenesis, this review focuses on recent progress in studies on cancer chemopreventive activities of red wine polyphenol extracts and fractions as well as other red wine polyphenols, like procyanidin B5 analogues and myricetin.

  11. Abundance, diversity and community composition of free-living protozoa on vegetable sprouts.

    Science.gov (United States)

    Chavatte, N; Lambrecht, E; Van Damme, I; Sabbe, K; Houf, K

    2016-05-01

    Interactions with free-living protozoa (FLP) have been implicated in the persistence of pathogenic bacteria on food products. In order to assess the potential involvement of FLP in this contamination, detailed knowledge on their occurrence, abundance and diversity on food products is required. In the present study, enrichment and cultivation methods were used to inventory and quantify FLP on eight types of commercial vegetable sprouts (alfalfa, beetroot, cress, green pea, leek, mung bean, red cabbage and rosabi). In parallel, total aerobic bacteria and Escherichia coli counts were performed. The vegetable sprouts harbored diverse communities of FLP, with Tetrahymena (ciliate), Bodo saltans and cercomonads (flagellates), and Acanthamoeba and Vannella (amoebae) as the dominant taxa. Protozoan community composition and abundance significantly differed between the sprout types. Beetroot harbored the most abundant and diverse FLP communities, with many unique species such as Korotnevella sp., Vannella sp., Chilodonella sp., Podophrya sp. and Sphaerophrya sp. In contrast, mung bean sprouts were species-poor and had low FLP numbers. Sampling month and company had no significant influence, suggesting that seasonal and local factors are of minor importance. Likewise, no significant relationship between protozoan community composition and bacterial load was observed. Copyright © 2015 Elsevier Ltd. All rights reserved.

  12. Ethnobotany Study of Seaweed Diversity and Its Utilization in Warambadi, Panguhalodo Areas of East Sumba District

    OpenAIRE

    Anggadiredja, Jana Tjahjana

    2009-01-01

    This paper reports the ethnobotany study of seaweed diversity in Warambadi –Panguhalodo areas of East Sumba District, the island of Sumba. The study recorded19 genera of 54 species of seaweed, which were utilized as food or edible seaweed.The group consisted of 17 species of green algae, 17 species of red algae, and 20species of brown algae. The study also reported that 18 genera of 38 species weretraditionally utilized for medicinal purposes as herbal medicine. The herbal speciesconsisted of...

  13. Vegetation ecology of eastern white pine and red pine forests in Ontario. Forest fragmentation and biodiversity project technical report No. 11

    Energy Technology Data Exchange (ETDEWEB)

    Carleton, T.J.

    1993-12-31

    This study explored changes in understory species composition and floristic diversity in eastern white pine and red pine stands in Ontario in relation to differences in site condition and stand age. It surveyed 170 natural, fire-origin stands containing at least a 10% component of red pine and white pine basal area throughout the Canadian Shield in Ontario during 1991 and 1992. The stands had not been previously logged and ranged in age from 50-300 years. Sampling was conducted using plots of fixed area. Within these plots, subplots were sampled to capture the variety of vegetation that occurred at different scales. Stand-level data were also recorded outside the fixed area plots. Detailed site data were also collected, including information on soils, topography, coarse woody debris (both standing and fallen), and the nature of the forest floor substrates.

  14. High-resolution UV-visible spectroscopy of lunar red spots

    Science.gov (United States)

    Bruno, B. C.; Lucey, P. G.; Hawke, B. R.

    1991-01-01

    A spectral reflectance study of selected lunar 'red spots', highland areas characterized by an absorption in the ultraviolet relative to the visible was conducted. Some red spots were suggested to be the sites of ancient highland volcanism. High-resolution spectral data of eight red spots on the western portion of the moon over the wavelength region 0.39-0.82 micron were obtained. Much spectral variation among these red spots in the magnitude as well as the wavelength position of the ultraviolet absorption were found. Spectral structure at visible and near-infrared wavelength were also identified. These spectral differences indicate that red spots do not have a single mineralogical composition, which in turn suggests that red spots may have multiple origins. Additional imaging spectroscopic observations were taken of the Herigonius red spot, a morphologically complex region northeast of Mare Humorum. These data reveal significant spectral differences among the various morphological units within the Herigonius red spot. Although some of these are likely due to the effects of the maturation process, others appear to reflect differences in mineral abundances and composition.

  15. Adsorption behavior of direct red 80 and congo red onto activated carbon/surfactant: Process optimization, kinetics and equilibrium

    Science.gov (United States)

    Cheng, Zhengjun; Zhang, Lei; Guo, Xiao; Jiang, Xiaohui; Li, Tian

    2015-02-01

    Adsorptions of congo red and direct red 80 onto activated carbon/surfactant from aqueous solution were optimized. The Box-Behnken design (BBD) has been employed to analyze the effects of concentration of surfactant, temperature, pH, and initial concentration of the dye in the adsorption capacity. Their corresponding experimental data could be evaluated excellently by second order polynomial regression models and the two models were also examined based on the analysis of variance and t test statistics, respectively. The optimum conditions were obtained as follows: Cs = 34.10 μM, T = 50 °C, pH = 3.5, and CCR = 160 mg/L for the congo red system, and Cs = 34.10 μM, T = 50 °C, pH = 6.1, and CDR80 = 110 mg/L for the direct red 80 system. And in these conditions, the measured experimental maximum adsorption capacities for the congo red and direct red 80 removals were 769.48 mg/g and 519.90 mg/g, which were consistent with their corresponding predicted values, with small relative errors of -2.81% and -0.67%, respectively. The adsorption equilibrium and kinetics for the two dye adsorptions onto AC/DDAC were also investigated. The experimental data were fitted by four isotherm models, and Langmuir model presented the best fit. The kinetic studies indicated that the kinetic data followed the pseudo-second-order model.

  16. The role of food, sex and travel in the diversity of our planet. (Invited)

    Science.gov (United States)

    Souza, V.; Eguiarte, L. E.; Elser, J. J.; Travisano, M.

    2010-12-01

    Planet Earth’s timeline shows us that, most of the time, this was an aquatic world where nutrients were scarce and where biodiversity was enormous. Most major groups of microbes evolved and diversified during the first 3.5 billion years of life on a place where the available inorganic P was likely extremely limited. To better understand microbial ecology and evolution, we need to study microorganisms that can survive in the extreme nutrient conditions such as those of the past. The metagenome of a microbial mat from the the most stoichiometrically imbalanced environment that we know (C:N:P=15,000:100:1) is devoid of the known P intake genes. This microbial mat (photo) is from an evaporating red pond, one of the most common ecosystems in a rare oasis located in the desert of Coahuila (Mexico) at Cuatro Cienegas (CCB). The red pool that was sequenced is dominated by a very diverse array of new lineages of Pseudomonas that can degrade all the xenobiotics predicted by the Kegg database. Furthermore, the sequences are enriched in genes for microbial interactions but depleted in genes related to primary production. The contrast between oligotrophic oceanic sites and the CCB red pool shows that there are many different ecologies in P-limited sites. Moreover, in CCB, endemism seems to be the rule, even within broadly dispersed taxa such as Bacillus and Actinobacteria, Pseudomonas, diatoms, and even viruses. Geographic structure and small patches are also the rule at CCB, increasing the total diversity of the site. We have proposed that, in a place with severe P limitation, HGT should be limited by the rarity of encounters, the low densities of virus, and the enormous nutritional value of DNA and RNA from lysed cells. In CCB, all the studied lineages show a highly clonal structure. High speciation rates in clonal lineages caused by biotic interactions correspond to the Red queen model of evolution. Thus, at CCB, infrequent sex and rare colonization caused by a very long

  17. Low genetic diversity and minimal population substructure in the endangered Florida manatee: implications for conservation

    Science.gov (United States)

    Tucker, Kimberly Pause; Hunter, Margaret E.; Bonde, Robert K.; Austin, James D.; Clark, Ann Marie; Beck, Cathy A.; McGuire, Peter M.; Oli, Madan K.

    2012-01-01

    Species of management concern that have been affected by human activities typically are characterized by low genetic diversity, which can adversely affect their ability to adapt to environmental changes. We used 18 microsatellite markers to genotype 362 Florida manatees (Trichechus manatus latirostris), and investigated genetic diversity, population structure, and estimated genetically effective population size (Ne). The observed and expected heterozygosity and average number of alleles were 0.455 ± 0.04, 0.479 ± 0.04, and 4.77 ± 0.51, respectively. All measures of Florida manatee genetic diversity were less than averages reported for placental mammals, including fragmented or nonideal populations. Overall estimates of differentiation were low, though significantly greater than zero, and analysis of molecular variance revealed that over 95% of the total variance was among individuals within predefined management units or among individuals along the coastal subpopulations, with only minor portions of variance explained by between group variance. Although genetic issues, as inferred by neutral genetic markers, appear not to be critical at present, the Florida manatee continues to face demographic challenges due to anthropogenic activities and stochastic factors such as red tides, oil spills, and disease outbreaks; these can further reduce genetic diversity of the manatee population.

  18. The interplay of diversity training and diversity beliefs on team creativity in nationality diverse teams

    NARCIS (Netherlands)

    Homan, A.C.; Buengeler, C.; Eckhoff, R.A.; van Ginkel, W.P.; Voelpel, S.C.

    2015-01-01

    Attaining value from nationality diversity requires active diversity management, which organizations often employ in the form of diversity training programs. Interestingly, however, the previously reported effects of diversity training are often weak and, sometimes, even negative. This situation

  19. Red Storm usage model :Version 1.12.

    Energy Technology Data Exchange (ETDEWEB)

    Jefferson, Karen L.; Sturtevant, Judith E.

    2005-12-01

    Red Storm is an Advanced Simulation and Computing (ASC) funded massively parallel supercomputer located at Sandia National Laboratories (SNL). The Red Storm Usage Model (RSUM) documents the capabilities and the environment provided for the FY05 Tri-Lab Level II Limited Availability Red Storm User Environment Milestone and the FY05 SNL Level II Limited Availability Red Storm Platform Milestone. This document describes specific capabilities, tools, and procedures to support both local and remote users. The model is focused on the needs of the ASC user working in the secure computing environments at Los Alamos National Laboratory (LANL), Lawrence Livermore National Laboratory (LLNL), and SNL. Additionally, the Red Storm Usage Model maps the provided capabilities to the Tri-Lab ASC Computing Environment (ACE) requirements. The ACE requirements reflect the high performance computing requirements for the ASC community and have been updated in FY05 to reflect the community's needs. For each section of the RSUM, Appendix I maps the ACE requirements to the Limited Availability User Environment capabilities and includes a description of ACE requirements met and those requirements that are not met in that particular section. The Red Storm Usage Model, along with the ACE mappings, has been issued and vetted throughout the Tri-Lab community.

  20. 27 CFR 9.190 - Red Hill Douglas County, Oregon.

    Science.gov (United States)

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Red Hill Douglas County... Areas § 9.190 Red Hill Douglas County, Oregon. (a) Name. The name of the viticultural area described in this section is “Red Hill Douglas County, Oregon”. For purposes of part 4 of this chapter, “Red Hill...

  1. Green Plants in the Red: A Baseline Global Assessment for the IUCN Sampled Red List Index for Plants.

    Directory of Open Access Journals (Sweden)

    Neil A Brummitt

    Full Text Available Plants provide fundamental support systems for life on Earth and are the basis for all terrestrial ecosystems; a decline in plant diversity will be detrimental to all other groups of organisms including humans. Decline in plant diversity has been hard to quantify, due to the huge numbers of known and yet to be discovered species and the lack of an adequate baseline assessment of extinction risk against which to track changes. The biodiversity of many remote parts of the world remains poorly known, and the rate of new assessments of extinction risk for individual plant species approximates the rate at which new plant species are described. Thus the question 'How threatened are plants?' is still very difficult to answer accurately. While completing assessments for each species of plant remains a distant prospect, by assessing a randomly selected sample of species the Sampled Red List Index for Plants gives, for the first time, an accurate view of how threatened plants are across the world. It represents the first key phase of ongoing efforts to monitor the status of the world's plants. More than 20% of plant species assessed are threatened with extinction, and the habitat with the most threatened species is overwhelmingly tropical rain forest, where the greatest threat to plants is anthropogenic habitat conversion, for arable and livestock agriculture, and harvesting of natural resources. Gymnosperms (e.g. conifers and cycads are the most threatened group, while a third of plant species included in this study have yet to receive an assessment or are so poorly known that we cannot yet ascertain whether they are threatened or not. This study provides a baseline assessment from which trends in the status of plant biodiversity can be measured and periodically reassessed.

  2. Red warning for air pollution in China: Exploring residents' perceptions of the first two red warnings in Beijing.

    Science.gov (United States)

    Zhao, Hanping; Wang, Fangping; Niu, Chence; Wang, Han; Zhang, Xiaoxue

    2018-02-01

    Air pollution early warnings have been issued in China to mitigate the effects of high pollution days. Public perceptions and views about early warning signals can affect individual behaviors and play a major role in the public's response to air pollution risks. This study examined public attitudes and responses to the first two red warnings for air pollution in Beijing in 2015. An online survey was sent out, and 664 respondents (response rate = 90%) provided their perspectives on the red warnings. Descriptive statistics, sign tests and binary logit models were used to analyze the data. More than half of the respondents reported that their life and work were affected by the red warning in December 2015. In contrast to their perceptions about the second red warning period, the public thought that the first red warning should have been issued earlier and that the number of consecutive days of warnings should have been reduced. The respondents also recommended that instead of reducing the number of red warnings, the red warning emergency measures should be adjusted. Specifically, the public preferred the installation of air purifiers in schools rather than closing schools and strengthening road flushing and dust pollution controls over restrictions on driving. Data analyses were conducted to examine the affected groups and different groups' perceptions of the necessity of implementing emergency measures. The results indicated that men and more educated respondents were more likely to be affected by driving limitations, and men were less supportive of these limitations. The age and education of respondents were significantly negatively associated with the opinion that schools should be closed, whereas wealthier respondents were more supportive of school closings. The finding of a negative attitude among the public toward the first two red warnings may be used to help local governments modify protective measures and pollution mitigation initiatives to increase

  3. Abundance and diversity of CO2-fixing bacteria in grassland soils close to natural carbon dioxide springs.

    Science.gov (United States)

    Videmsek, Urska; Hagn, Alexandra; Suhadolc, Marjetka; Radl, Viviane; Knicker, Heike; Schloter, Michael; Vodnik, Dominik

    2009-07-01

    Gaseous conditions at natural CO2 springs (mofettes) affect many processes in these unique ecosystems. While the response of plants to extreme and fluctuating CO2 concentrations ([CO2]) is relatively well documented, little is known on microbial life in mofette soil. Therefore, it was the aim of this study to investigate the abundance and diversity of CO2-fixing bacteria in grassland soils in different distances to a natural carbon dioxide spring. Samples of the same soil type were collected from the Stavesinci mofette, a natural CO2 spring which is known for very pure CO2 emissions, at different distances from the CO2 releasing vents, at locations that clearly differed in soil CO2 efflux (from 12.5 to over 200 micromol CO2 m(-2) s(-1) yearly average). Bulk and rhizospheric soil samples were included into analyses. The microbial response was followed by a molecular analysis of cbbL genes, encoding for the large subunit of RubisCO, a carboxylase which is of crucial importance for C assimilation in chemolitoautotrophic microbes. In all samples analyzed, the "red-like" type of cbbL genes could be detected. In contrast, the "green-like" type of cbbL could not be measured by the applied technique. Surprisingly, a reduction of "red-like" cbbL genes copies was observed in bulk soil and rhizosphere samples from the sites with the highest CO2 concentrations. Furthermore, the diversity pattern of "red-like" cbbL genes changed depending on the CO(2) regime. This indicates that only a part of the autotrophic CO2-fixing microbes could adapt to the very high CO2 concentrations and adverse life conditions that are governed by mofette gaseous regime.

  4. Radiosensitivity of red flour beetle tribolium castaneum

    International Nuclear Information System (INIS)

    Sattar, A.; Khattak, S.; Hamed, M.

    1992-07-01

    In this report radiosensitivity of red beetle has been discussed. Red flour beetle is the most injurious pest causing great losses to stored grain. Radiation is one of the best tools of insect control. Different radiation doses (50 to 200 krads) were employed for different age groups from 1 to 60 days. It is concluded from these results that 200 krad radiation dose caused 100% mortality in red beetle in all age group. (A.B.)

  5. The diversity and biogeography of Western Indian Ocean reef-building corals.

    Directory of Open Access Journals (Sweden)

    David Obura

    Full Text Available This study assesses the biogeographic classification of the Western Indian Ocean (WIO on the basis of the species diversity and distribution of reef-building corals. Twenty one locations were sampled between 2002 and 2011. Presence/absence of scleractinian corals was noted on SCUBA, with the aid of underwater digital photographs and reference publications for species identification. Sampling effort varied from 7 to 37 samples per location, with 15 to 45 minutes per dive allocated to species observations, depending on the logistics on each trip. Species presence/absence was analyzed using the Bray-Curtis similarity coefficient, followed by cluster analysis and multi-dimensional scaling. Total (asymptotic species number per location was estimated using the Michaelis-Menten equation. Three hundred and sixty nine coral species were named with stable identifications and used for analysis. At the location level, estimated maximum species richness ranged from 297 (Nacala, Mozambique to 174 (Farquhar, Seychelles. Locations in the northern Mozambique Channel had the highest diversity and similarity, forming a core region defined by its unique oceanography of variable meso-scale eddies that confer high connectivity within this region. A distinction between mainland and island fauna was not found; instead, diversity decreased radially from the northern Mozambique Channel. The Chagos archipelago was closely related to the northern Mozambique Channel region, and analysis of hard coral data in the IUCN Red List found Chagos to be more closely related to the WIO than to the Maldives, India and Sri Lanka. Diversity patterns were consistent with primary oceanographic drivers in the WIO, reflecting inflow of the South Equatorial Current, maintenance of high diversity in the northern Mozambique Channel, and export from this central region to the north and south, and to the Seychelles and Mascarene islands.

  6. Diverse crowds using diverse methods improves the scientific dialectic.

    Science.gov (United States)

    Motyl, Matt; Iyer, Ravi

    2015-01-01

    In science, diversity is vital to the development of new knowledge. We agree with Duarte et al. that we need more political diversity in social psychology, but contend that we need more religious diversity and methodological diversity as well. If some diversity is good, more is better (especially in science).

  7. Cytotoxicity of Phenol Red in Toxicity Assays for Carbon Nanoparticles

    Directory of Open Access Journals (Sweden)

    Chunhai Fan

    2012-09-01

    Full Text Available To explore the novel properties of carbon nanoparticles (CNPs in nanotoxicity assays, the adsorption of phenol red (a pH indicator for culture medium by multi-walled carbon nanotubes (MWNTs and three kinds of carbon blacks (CBs with nanosize, and its effects on cytotoxicity were studied. Results indicated that the phenol red adsorbed and delivered into cells by CBs was responsible for the toxicity to Hela cells in the medium without serum. The cellular uptake of phenol red was verified using 125I-labeling techniques. The size-dependent cytotoxicity of CBs was found to closely correlate to adsorption of phenol red, cellular uptake of phenol red-CB complexes and the amount of phenol red delivered into the cells by CBs. Although the CBs were either nontoxic or slightly toxic, as vehicles of phenol red, they played an essential role in the cytotoxicity induced by phenol red. However, MWNTs showed an intrinsic cytotoxicity independent of phenol red. The implications associated with these findings are discussed.

  8. Disequilibrium of flavonol synthase and dihydroflavonol-4-reductase expression associated tightly to white versus red color flower formation in plants

    Directory of Open Access Journals (Sweden)

    Ping eLuo

    2016-01-01

    Full Text Available Flower colour is the main character throughout the plant kingdom. Though substantial information exists regarding the structural and regulatory genes involved in anthocyanin and flavonol biosynthesis, little is known that what make a diverse white versus red color flower in natural species. Here, the contents of pigments in seven species from varied phylogenetic location in plants with red and white flowers.were determined. Flavonols could be detected in red and white flowers, but anthocyanins were almost undetectable in the white cultivar. Comparisons of expression patterns of gene related to the flavonoid biosynthesis indicated that disequilibrium expression of flavonol synthase (FLS and dihydroflavonol-4-reductase (DFR genes determined the accumulation of flavonols and anothcyanins in both red and white flowers of seven species. To further investigate the role of such common regulatory patterns in determining flower color, FLS genes were isolated from Rosa rugosa (RrFLS1, Prunus persica (PpFLS and Petunia hybrida (PhFLS, and DFR genes were isolated from Rosa rugosa (RrDFR1 and Petunia hybrida (PhDFR. Heterologous expression of the FLS genes within tobacco host plants demonstrated conservation of function, with the transgenes promoting flavonol biosynthesis and inhibiting anthocyanin accumulation, so resulting in white flowers. Conversely, overexpression of DFR genes in tobacco displayed down-regulation of the endogenous NtFLS gene, and the promotion of anthocyanin synthesis. On this basis, we propose a model in which FLS and DFR gene-products compete for common substrates in order to direct the biosynthesis of flavonols and anthocyanins, respectively, thereby determining white versus red coloration of flowers.

  9. 7 CFR 29.3068 - Tannish-red color (FR).

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Tannish-red color (FR). 29.3068 Section 29.3068 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards... Type 93) § 29.3068 Tannish-red color (FR). A light red shaded toward tan. [24 FR 8771, Oct. 29, 1959...

  10. Causes of Red Eye-Uveitis

    OpenAIRE

    Selçuk Sızmaz

    2012-01-01

    Uveitis, being an important cause of ocular morbidity, must be taken into consideration in the differential diagnosis and the management of patients with red eye. Uveitis entities can demonstrate variable clinical features. Patients presenting with uveitis must undergo careful systemic evaluation for exact diagnosis and treatment. Studies for standardization of uveitis with variable clinical pictures are emerging. Acute anterior uveitis and panuveitis can cause red eye. The purpose o...

  11. Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality.

    Science.gov (United States)

    Raulo, Aura; Ruokolainen, Lasse; Lane, Avery; Amato, Katherine; Knight, Rob; Leigh, Steven; Stumpf, Rebecca; White, Bryan; Nelson, Karen E; Baden, Andrea L; Tecot, Stacey R

    2018-03-01

    Vertebrate gut microbiota form a key component of immunity and a dynamic link between an individual and the ecosystem. Microbiota might play a role in social systems as well, because microbes are transmitted during social contact and can affect host behaviour. Combining methods from behavioural and molecular research, we describe the relationship between social dynamics and gut microbiota of a group-living cooperative species of primate, the red-bellied lemur (Eulemur rubriventer). Specifically, we ask whether patterns of social contact (group membership, group size, position in social network, individual sociality) are associated with patterns of gut microbial composition (diversity and similarity) between individuals and across time. Red-bellied lemurs were found to have gut microbiota with slight temporal fluctuations and strong social group-specific composition. Contrary to expectations, individual sociality was negatively associated with gut microbial diversity. However, position within the social network predicted gut microbial composition. These results emphasize the role of the social environment in determining the microbiota of adult animals. Since social transmission of gut microbiota has the potential to enhance immunity, microbiota might have played an escalating role in the evolution of sociality. © 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.

  12. The NHLBI Retrovirus Epidemiology Donor Studies (REDS and REDS-II): Twenty years of research to advance blood product safety and availability

    Science.gov (United States)

    Kleinman, Steven; King, Melissa R; Busch, Michael P; Murphy, Edward L; Glynn, Simone A.

    2012-01-01

    The Retrovirus Epidemiology Donor Study (REDS), conducted from 1989–2001, and the Retrovirus Epidemiology Donor Study-II (REDS-II), conducted from 2004–2012, were National Heart Lung and Blood Institute (NHLBI) funded multicenter programs focused on improving blood safety and availability in the United States. REDS-II also included international study sites in Brazil and China. The three major research domains of REDS/REDS-II have been infectious disease risk evaluation, blood donation availability, and blood donor characterization. Both programs have made significant contributions to transfusion medicine research methodology by the use of mathematical modeling, large-scale donor surveys, innovative methods of repository sample storage, and establishing an infrastructure that responded to potential emerging blood safety threats such as XMRV. Blood safety studies have included protocols evaluating epidemiologic and/or laboratory aspects of HIV, HTLV I/II, HCV, HBV, WNV, CMV, HHV-8, B19V, malaria, CJD, influenza, and T. cruzi infections. Other analyses have characterized: blood donor demographics, motivations to donate, factors influencing donor return, behavioral risk factors, donors’ perception of the blood donation screening process, and aspects of donor deferral. In REDS-II, two large-scale blood donor protocols examined iron deficiency in donors and the prevalence of leukocyte antibodies. This review describes the major study results from over 150 peer-reviewed articles published by these two REDS programs. In 2011, a new seven year program, the Recipient Epidemiology and Donor Evaluation Study-III (REDS-III), was launched. REDS-III expands beyond donor-based research to include studies of blood transfusion recipients in the hospital setting, and adds a third country, South Africa, to the international program. PMID:22633182

  13. C-RED One and C-RED2: SWIR high-performance cameras using Saphira e-APD and Snake InGaAs detectors

    Science.gov (United States)

    Gach, Jean-Luc; Feautrier, Philippe; Stadler, Eric; Clop, Fabien; Lemarchand, Stephane; Carmignani, Thomas; Wanwanscappel, Yann; Boutolleau, David

    2018-02-01

    After the development of the OCAM2 EMCCD fast visible camera dedicated to advanced adaptive optics wavefront sensing, First Light Imaging moved to the SWIR fast cameras with the development of the C-RED One and the C-RED 2 cameras. First Light Imaging's C-RED One infrared camera is capable of capturing up to 3500 full frames per second with a subelectron readout noise and very low background. C-RED One is based on the last version of the SAPHIRA detector developed by Leonardo UK. This breakthrough has been made possible thanks to the use of an e-APD infrared focal plane array which is a real disruptive technology in imagery. C-RED One is an autonomous system with an integrated cooling system and a vacuum regeneration system. It operates its sensor with a wide variety of read out techniques and processes video on-board thanks to an FPGA. We will show its performances and expose its main features. In addition to this project, First Light Imaging developed an InGaAs 640x512 fast camera with unprecedented performances in terms of noise, dark and readout speed based on the SNAKE SWIR detector from Sofradir. The camera was called C-RED 2. The C-RED 2 characteristics and performances will be described. The C-RED One project has received funding from the European Union's Horizon 2020 research and innovation program under grant agreement N° 673944. The C-RED 2 development is supported by the "Investments for the future" program and the Provence Alpes Côte d'Azur Region, in the frame of the CPER.

  14. Seasonal variation in the structure of red reflectance of leaves from yellow poplar, red oak, and red maple

    Science.gov (United States)

    Brakke, Thomas W.; Wergin, William P.; Erbe, Eric F.; Harnden, Joann M.

    1993-01-01

    The light scattered from leaves was measured as a function of view angle in the principal plane for yellow poplar, red oak, and red maple. The source was a parallel-polarized helium-neon laser. Yellow poplar leaves had the highest reflectance of the three species, which may have been due to its shorter palisade cells and more extensive spongy mesophyll. Prior to senescence, there was a significant decrease, but not total extinction, in the reflectance of the beam incident at 60 deg from nadir on the adaxial side of the leaves of all three species. Low-temperature SEM observations showed differences in the surface wax patterns among the three species but did not indicate a cause of the reflectance changes other than possibly the accumulation and aging of the wax.

  15. Moving Forward with Computational Red Teaming

    Science.gov (United States)

    2012-07-01

    Red Teaming is used across both public and private sectors and is not the sole domain of the military. Red Team Consulting (2011) notes that “the use...open for review. Consider also the context of application. Oh (2009) explains how globalisation , the rise of emerging powers, environmental

  16. Systematic chemical analysis approach reveals superior antioxidant capacity via the synergistic effect of flavonoid compounds in red vegetative tissues

    Science.gov (United States)

    Qin, Xiaoxiao; Lu, Yanfen; Peng, Zhen; Fan, Shuangxi; Yao, Yuncong

    2018-02-01

    The flavonoid system comprises an abundance of compounds with multiple functions; however, their potential synergism in antioxidant function remains unclear. We established an approach using ever-red (RL) and ever-green leaves (GL) of crabapple cultivars during their development to determine interrelationships among flavonoid compounds. RL scored significantly better than GL in terms of the type, composition, and diversity of flavonoids than GL. Principal component analysis predicted flavonoids in RL to have positive interaction effects, and the total antioxidant capacity was significantly higher than the sum of antioxidant capacities of the individual compounds. This synergy was verified by the high antioxidant capacity in rat serum after feeding on red leaves. Our findings suggest that the synergistic effect is a result of the high transcription levels regulated by McMYBs in RL. In summary, individual flavonoids cooperate in a flavonoid system, thus producing a synergistic antioxidant effect, and the approach used herein can provide insights into the roles of flavonoids and other compounds in future studies.

  17. The red and blue galaxy populations in the GOODS field: evidence for an excess of red dwarfs

    Science.gov (United States)

    Salimbeni, S.; Giallongo, E.; Menci, N.; Castellano, M.; Fontana, A.; Grazian, A.; Pentericci, L.; Trevese, D.; Cristiani, S.; Nonino, M.; Vanzella, E.

    2008-01-01

    Aims: We study the evolution of the galaxy population up to z˜ 3 as a function of its colour properties. In particular, luminosity functions and luminosity densities were derived as a function of redshift for the blue/late and red/early populations. Methods: We use data from the GOODS-MUSIC catalogue, which have typical magnitude limits z850≤ 26 and K_s≤ 23.5 for most of the sample. About 8% of the galaxies have spectroscopic redshifts; the remaining have well calibrated photometric redshifts derived from the extremely wide multi-wavelength coverage in 14 bands (from the U band to the Spitzer 8~ μm band). We have derived a catalogue of galaxies complete in the rest-frame B-band, which has been divided into two subsamples according to their rest-frame U-V colour (or derived specific star formation rate) properties. Results: We confirm a bimodality in the U-V colour and specific star formation rate of the galaxy sample up to z˜ 3. This bimodality is used to compute the luminosity functions of the blue/late and red/early subsamples. The luminosity functions of the blue/late and total samples are well represented by steep Schechter functions evolving in luminosity with increasing redshifts. The volume density of the luminosity functions of the red/early populations decreases with increasing redshift. The shape of the red/early luminosity functions shows an excess of faint red dwarfs with respect to the extrapolation of a flat Schechter function and can be represented by the sum of two Schechter functions. Our model for galaxy formation in the hierarchical clustering scenario, which also includes external feedback due to a diffuse UV background, shows a general broad agreement with the luminosity functions of both populations, the larger discrepancies being present at the faint end for the red population. Hints on the nature of the red dwarf population are given on the basis of their stellar mass and spatial distributions.

  18. In vivo studies of the long-term 51Cr red cell survival of serologically incompatible red cell units

    International Nuclear Information System (INIS)

    Baldwin, M.L.; Ness, P.M.; Barrasso, C.; Kickler, T.S.; Drew, H.; Tsan, M.F.; Shirey, R.S.

    1985-01-01

    The long-term survival of serologically incompatible red cell units was measured in five patients with antibodies to high-frequency antigens. Initially, the survival of 1 ml of 51 Cr-labeled incompatible red cells was measured over 1 hour. After demonstrating that the 1-hour survival times were successful (greater than 70%), each patient then received 5 ml of the same 51 Cr-labeled red cells followed by the transfusion of the remainder of the red cell unit. The long-term T 1/2Cr survival for each case was patient 1 (anti-McCa), 15 days; patient 2 (anti-JMH), 12 days; patient 3 (anti-Kna), 31 days; patient 4 (anti-McCa), 12 days; and patient 5 (anti-Hya), 14 days. Each antibody tested in an in vitro homologous macrophage assay showed less than 5 percent phagocytosis. Anti-JMH was the only antibody to react with IgG subclass antisera and was determined to be IgG4. The macrophage assay, IgG subclass testing, and short-term (1 hour, 1 ml) 51 Cr survival studies all indicated that the short-term survival was good. However, only the measurement of long-term survival with transfused units of serologically incompatible red cells was able to determine the actual survival, and clinical significance of the alloantibodies. Determining the actual long-term survival by the method described here can be of importance for patients requiring chronic red cell transfusion

  19. The diversity and impact of hookworm infections in wildlife

    Directory of Open Access Journals (Sweden)

    Mauricio Seguel

    2017-12-01

    Full Text Available Hookworms are blood-feeding nematodes that parasitize the alimentary system of mammals. Despite their high pathogenic potential, little is known about their diversity and impact in wildlife populations. We conducted a systematic review of the literature on hookworm infections of wildlife and analyzed 218 studies qualitative and quantitatively. At least 68 hookworm species have been described in 9 orders, 24 families, and 111 species of wild mammals. Black bears, red foxes, and bobcats harbored the highest diversity of hookworm species and Ancylostoma pluridentatum, A. tubaeforme, Uncinaria stenocephala and Necator americanus were the hookworm species with the highest host diversity index. Hookworm infections cause anemia, retarded growth, tissue damage, inflammation and significant mortality in several wildlife species. Anemia has been documented more commonly in canids, felids and otariids, and retarded growth only in otariids. Population- level mortality has been documented through controlled studies only in canines and eared seals although sporadic mortality has been noticed in felines, bears and elephants. The main driver of hookworm pathogenic effects was the hookworm biomass in a population, measured as prevalence, mean burden and hookworm size (length. Many studies recorded significant differences in prevalence and mean intensity among regions related to contrasts in local humidity, temperature, and host population density. These findings, plus the ability of hookworms to perpetuate in different host species, create a dynamic scenario where changes in climate and the domestic animal-human-wildlife interface will potentially affect the dynamics and consequences of hookworm infections in wildlife. Keywords: Ancylostoma, Hookworm, Uncinaria, Pathology, Epidemiology, Wildlife

  20. Discussion on the differences between epigenetic oxidized and primary red beds

    International Nuclear Information System (INIS)

    Chen Xiaolin; Fang Xiheng; Sun Ye; Pang Yaqing; Guo Qingyin

    2008-01-01

    The red oxidation zone may be formed in the process of the interlayer oxidation. If the original gray beds formed in the moist palaeoclimatic condition and became red in oxidation, it is easy to distinguish this red oxidization zone from the original red beds. Gray sandstone sandwiched by red mudstone can be formed partially in the arid-semiarid condition. If this gray sandstone was oxidized to be red in color, almost all the strata would be red in cross section, and then it will be difficult to distinguish these red strata from the original red beds. If they are regarded as original red beds, we maybe lose the favorable opportunity to find uranium deposit. This paper presents a case study of Yaojia Formation, Upper Cretaceous in the southwestern part of Songliao Basin. Although the palaeoelimatic condition was arid-semiarid, the gray sandstones of Yaojia Formation in Qianjiadian Sag and its adjacent areas have obvious characteristics of primary depositional origin, and part of them may be formed by epigenetic reduction. The gray sandstone has formed red interlayer oxidation zone after being oxidized and it is just the red interlayer oxidation zone which controls the uranium mineralization in Qianjiadian uranium deposit. By careful contrast and analysis, identification marks of red epigenetic oxidation beds have be established, which can effectively help the distinguishing of epigenetic oxidized red beds from original red beds and extends prospecting idea. (authors)