Topographic Digital Raster Graphics - USGS DIGITAL RASTER GRAPHICS

Data.gov (United States)

NSGIC Local Govt | GIS Inventory — USGS Topographic Digital Raster Graphics downloaded from LABINS (http://data.labins.org/2003/MappingData/drg/drg_stpl83.cfm). A digital raster graphic (DRG) is a...

Automated extraction of chemical structure information from digital raster images

Directory of Open Access Journals (Sweden)

Shedden Kerby A

2009-02-01

Full Text Available Abstract Background To search for chemical structures in research articles, diagrams or text representing molecules need to be translated to a standard chemical file format compatible with cheminformatic search engines. Nevertheless, chemical information contained in research articles is often referenced as analog diagrams of chemical structures embedded in digital raster images. To automate analog-to-digital conversion of chemical structure diagrams in scientific research articles, several software systems have been developed. But their algorithmic performance and utility in cheminformatic research have not been investigated. Results This paper aims to provide critical reviews for these systems and also report our recent development of ChemReader – a fully automated tool for extracting chemical structure diagrams in research articles and converting them into standard, searchable chemical file formats. Basic algorithms for recognizing lines and letters representing bonds and atoms in chemical structure diagrams can be independently run in sequence from a graphical user interface-and the algorithm parameters can be readily changed-to facilitate additional development specifically tailored to a chemical database annotation scheme. Compared with existing software programs such as OSRA, Kekule, and CLiDE, our results indicate that ChemReader outperforms other software systems on several sets of sample images from diverse sources in terms of the rate of correct outputs and the accuracy on extracting molecular substructure patterns. Conclusion The availability of ChemReader as a cheminformatic tool for extracting chemical structure information from digital raster images allows research and development groups to enrich their chemical structure databases by annotating the entries with published research articles. Based on its stable performance and high accuracy, ChemReader may be sufficiently accurate for annotating the chemical database with links

Vector and Raster Data Storage Based on Morton Code

Science.gov (United States)

Zhou, G.; Pan, Q.; Yue, T.; Wang, Q.; Sha, H.; Huang, S.; Liu, X.

2018-05-01

Even though geomatique is so developed nowadays, the integration of spatial data in vector and raster formats is still a very tricky problem in geographic information system environment. And there is still not a proper way to solve the problem. This article proposes a method to interpret vector data and raster data. In this paper, we saved the image data and building vector data of Guilin University of Technology to Oracle database. Then we use ADO interface to connect database to Visual C++ and convert row and column numbers of raster data and X Y of vector data to Morton code in Visual C++ environment. This method stores vector and raster data to Oracle Database and uses Morton code instead of row and column and X Y to mark the position information of vector and raster data. Using Morton code to mark geographic information enables storage of data make full use of storage space, simultaneous analysis of vector and raster data more efficient and visualization of vector and raster more intuitive. This method is very helpful for some situations that need to analyse or display vector data and raster data at the same time.

Presolar SiC Abundances in Primitive Meteorites by NanoSIMS Raster Ion Imaging of Insoluble Organic Matter

Science.gov (United States)

Davidson, J.; Busemann, H.; Alexander, C. M. O'd.; Nittler, L. R.; Schrader, D. L.; Orthous-Daunay, F. R.; Quirico, E.; Franchi, I. A.; Grady, M. M.

2009-03-01

We present results obtained with NanoSIMS raster ion imaging to determine the abundance of presolar SiC in the insoluble organic matter (IOM) extracted from a number of different classes of chondrites (both carbonaceous and ordinary).

THE DESIGN OF A HIGH PERFORMANCE EARTH IMAGERY AND RASTER DATA MANAGEMENT AND PROCESSING PLATFORM

Directory of Open Access Journals (Sweden)

Q. Xie

2016-06-01

Full Text Available This paper summarizes the general requirements and specific characteristics of both geospatial raster database management system and raster data processing platform from a domain-specific perspective as well as from a computing point of view. It also discusses the need of tight integration between the database system and the processing system. These requirements resulted in Oracle Spatial GeoRaster, a global scale and high performance earth imagery and raster data management and processing platform. The rationale, design, implementation, and benefits of Oracle Spatial GeoRaster are described. Basically, as a database management system, GeoRaster defines an integrated raster data model, supports image compression, data manipulation, general and spatial indices, content and context based queries and updates, versioning, concurrency, security, replication, standby, backup and recovery, multitenancy, and ETL. It provides high scalability using computer and storage clustering. As a raster data processing platform, GeoRaster provides basic operations, image processing, raster analytics, and data distribution featuring high performance computing (HPC. Specifically, HPC features include locality computing, concurrent processing, parallel processing, and in-memory computing. In addition, the APIs and the plug-in architecture are discussed.

The Design of a High Performance Earth Imagery and Raster Data Management and Processing Platform

Science.gov (United States)

Xie, Qingyun

2016-06-01

This paper summarizes the general requirements and specific characteristics of both geospatial raster database management system and raster data processing platform from a domain-specific perspective as well as from a computing point of view. It also discusses the need of tight integration between the database system and the processing system. These requirements resulted in Oracle Spatial GeoRaster, a global scale and high performance earth imagery and raster data management and processing platform. The rationale, design, implementation, and benefits of Oracle Spatial GeoRaster are described. Basically, as a database management system, GeoRaster defines an integrated raster data model, supports image compression, data manipulation, general and spatial indices, content and context based queries and updates, versioning, concurrency, security, replication, standby, backup and recovery, multitenancy, and ETL. It provides high scalability using computer and storage clustering. As a raster data processing platform, GeoRaster provides basic operations, image processing, raster analytics, and data distribution featuring high performance computing (HPC). Specifically, HPC features include locality computing, concurrent processing, parallel processing, and in-memory computing. In addition, the APIs and the plug-in architecture are discussed.

Experimental determination of chosen document elements parameters from raster graphics sources

Directory of Open Access Journals (Sweden)

Jiří Rybička

2010-01-01

Full Text Available Visual appearance of documents and their formal quality is considered to be as important as the content quality. Formal and typographical quality of documents can be evaluated by an automated system that processes raster images of documents. A document is described by a formal model that treats a page as an object and also as a set of elements, whereas page elements include text and graphic object. All elements are described by their parameters depending on elements’ type. For future evaluation, mainly text objects are important. This paper describes the experimental determination of chosen document elements parameters from raster images. Techniques for image processing are used, where an image is represented as a matrix of dots and parameter values are extracted. Algorithms for parameter extraction from raster images were designed and were aimed mainly at typographical parameters like indentation, alignment, font size or spacing. Algorithms were tested on a set of 100 images of paragraphs or pages and provide very good results. Extracted parameters can be directly used for typographical quality evaluation.

1:100k Digital Raster Graphic - Collars Removed

Data.gov (United States)

Minnesota Department of Natural Resources — A digital raster graphic (DRG) is a scanned image of an U.S. Geological Survey (USGS) standard series topographic map, including all map collar information. The...

Fluorescence fluctuation spectroscopy (FFS), part A

CERN Document Server

Tetin, Sergey

2013-01-01

This new volume of Methods in Enzymology continues the legacy of this premier serial by containing quality chapters authored by leaders in the field. This volume covers Fluorescence Fluctuation SpectroscopyContains chapters on such topics as Time-integrated fluorescence cumulant analysis, Pulsed Interleaved Excitation, and raster image correlation spectroscopy and number and brightness analysis.Continues the legacy of this premier serial with quality chapters authored by leaders in the fieldCovers fluorescence fluctuation spectroscopyContains chapte

Beam raster system at CEBAF

International Nuclear Information System (INIS)

Yan, C.; Beaufait, J.; Brindza, P.; Carlini, R.; Vulcan, W.; Wines, R.

1993-01-01

A cascade raster system will be used in Hall C at CEBAF to generate a variable rastering pattern on the polarized target, the cryogenic hydrogen target, and the beam dump with adjustable frequency up to 10 kHz and variable deflection angle from 0.05 mr to 1 mr. Each raster consists of two air-core bedstead coils providing transverse and vertical scans. The magnets are energized by individual MOS power amplifiers controlled by a scan generator which determines frequency, amplitude, and phase shift between the cascade rasters

Custom-made raster method for fistula and graft.

Science.gov (United States)

Blokker, C

2005-01-01

Unfamiliarity with fistula and graft characteristics can lead to failed punctures, haematomas and sometimes access occlusion. The Custom-made Raster Method provides detailed shunt visualisation and angiographic images by using photo-editing software. Access veins of an individual shunt and an adapted raster are projected on a digital picture of the arm. During angiography the shunt arm is fixated and a digital picture is taken from a fixed vertical angle and distance. Reference points are marked on the shunt arm, which serves as a fixation to draw a raster with coordination points. In this way a picture is created similar to a roadmap with veins. There is complete integration of digital and radiological images by using software programmes Adobe Photoshop + Illustrator or Agfa Web 1000 under Windows XP. All illustrations fit 1:1 by scaling up or down without distortion. Editing with Photoshop gives a precise projection of shunt veins on the real coloured background of the digital photograph. In this projection the grey angiography background is made completely transparent. The system can contain more detailed information in combination with echo (duplex) images of depth and diameter. This visualisation method is a useful tool for multi disciplinary access meetings with intervention radiologists, access surgeons and nephrologists. Access malfunction, aneurysms and stenosis can be projected at the exact location. The system leads to clear and concrete puncture advice. Transfer of access information and communication to other dialysis centres is facilitated.

Function modeling: improved raster analysis through delayed reading and function raster datasets

Science.gov (United States)

John S. Hogland; Nathaniel M. Anderson; J .Greg Jones

2013-01-01

Raster modeling is an integral component of spatial analysis. However, conventional raster modeling techniques can require a substantial amount of processing time and storage space, often limiting the types of analyses that can be performed. To address this issue, we have developed Function Modeling. Function Modeling is a new modeling framework that streamlines the...

Multicolor Graphic Picture With Original Ring Raster Element

Directory of Open Access Journals (Sweden)

Jana Ziljak Vujic

2006-12-01

Full Text Available This paper deals with graphics and color rastering using new raster forms as well as raster combinations in vector anda pixel graphics, with combining both graphics in the same document. The unwanted increase or decrease of color coverage depends most of all on the fringe volume length bordering the raster element. The idea of this research work is to find a form alters in the least extent the raster element fringe volume in respect to its increase or decrease. The innovation in this research work is not only in the fact that the raster element's volume is altered in the minimal degree, but also that it does not change at all with the covering capacity increase or decrease. The solution led in the direction of creating such a raster element that has at least two independent shells where one increases in size together with the raster element increase, and the other one decreases when the raster element size increases. We have named this raster form as the ring form due to its similarity with a classical smooth ring.

Mesh-to-raster region-of-interest-based nonrigid registration of multimodal images.

Science.gov (United States)

Tatano, Rosalia; Berkels, Benjamin; Deserno, Thomas M

2017-10-01

Region of interest (RoI) alignment in medical images plays a crucial role in diagnostics, procedure planning, treatment, and follow-up. Frequently, a model is represented as triangulated mesh while the patient data is provided from computed axial tomography scanners as pixel or voxel data. Previously, we presented a 2-D method for curve-to-pixel registration. This paper contributes (i) a general mesh-to-raster framework to register RoIs in multimodal images; (ii) a 3-D surface-to-voxel application, and (iii) a comprehensive quantitative evaluation in 2-D using ground truth (GT) provided by the simultaneous truth and performance level estimation (STAPLE) method. The registration is formulated as a minimization problem, where the objective consists of a data term, which involves the signed distance function of the RoI from the reference image and a higher order elastic regularizer for the deformation. The evaluation is based on quantitative light-induced fluoroscopy (QLF) and digital photography (DP) of decalcified teeth. STAPLE is computed on 150 image pairs from 32 subjects, each showing one corresponding tooth in both modalities. The RoI in each image is manually marked by three experts (900 curves in total). In the QLF-DP setting, our approach significantly outperforms the mutual information-based registration algorithm implemented with the Insight Segmentation and Registration Toolkit and Elastix.

Rasdaman for Big Spatial Raster Data

Science.gov (United States)

Hu, F.; Huang, Q.; Scheele, C. J.; Yang, C. P.; Yu, M.; Liu, K.

2015-12-01

Spatial raster data have grown exponentially over the past decade. Recent advancements on data acquisition technology, such as remote sensing, have allowed us to collect massive observation data of various spatial resolution and domain coverage. The volume, velocity, and variety of such spatial data, along with the computational intensive nature of spatial queries, pose grand challenge to the storage technologies for effective big data management. While high performance computing platforms (e.g., cloud computing) can be used to solve the computing-intensive issues in big data analysis, data has to be managed in a way that is suitable for distributed parallel processing. Recently, rasdaman (raster data manager) has emerged as a scalable and cost-effective database solution to store and retrieve massive multi-dimensional arrays, such as sensor, image, and statistics data. Within this paper, the pros and cons of using rasdaman to manage and query spatial raster data will be examined and compared with other common approaches, including file-based systems, relational databases (e.g., PostgreSQL/PostGIS), and NoSQL databases (e.g., MongoDB and Hive). Earth Observing System (EOS) data collected from NASA's Atmospheric Scientific Data Center (ASDC) will be used and stored in these selected database systems, and a set of spatial and non-spatial queries will be designed to benchmark their performance on retrieving large-scale, multi-dimensional arrays of EOS data. Lessons learnt from using rasdaman will be discussed as well.

The effect of monitor raster latency on VEPs, ERPs and Brain-Computer Interface performance.

Science.gov (United States)

Nagel, Sebastian; Dreher, Werner; Rosenstiel, Wolfgang; Spüler, Martin

2018-02-01

Visual neuroscience experiments and Brain-Computer Interface (BCI) control often require strict timings in a millisecond scale. As most experiments are performed using a personal computer (PC), the latencies that are introduced by the setup should be taken into account and be corrected. As a standard computer monitor uses a rastering to update each line of the image sequentially, this causes a monitor raster latency which depends on the position, on the monitor and the refresh rate. We technically measured the raster latencies of different monitors and present the effects on visual evoked potentials (VEPs) and event-related potentials (ERPs). Additionally we present a method for correcting the monitor raster latency and analyzed the performance difference of a code-modulated VEP BCI speller by correcting the latency. There are currently no other methods validating the effects of monitor raster latency on VEPs and ERPs. The timings of VEPs and ERPs are directly affected by the raster latency. Furthermore, correcting the raster latency resulted in a significant reduction of the target prediction error from 7.98% to 4.61% and also in a more reliable classification of targets by significantly increasing the distance between the most probable and the second most probable target by 18.23%. The monitor raster latency affects the timings of VEPs and ERPs, and correcting resulted in a significant error reduction of 42.23%. It is recommend to correct the raster latency for an increased BCI performance and methodical correctness. Copyright © 2017 Elsevier B.V. All rights reserved.

Raster Vs. Point Cloud LiDAR Data Classification

Science.gov (United States)

El-Ashmawy, N.; Shaker, A.

2014-09-01

Airborne Laser Scanning systems with light detection and ranging (LiDAR) technology is one of the fast and accurate 3D point data acquisition techniques. Generating accurate digital terrain and/or surface models (DTM/DSM) is the main application of collecting LiDAR range data. Recently, LiDAR range and intensity data have been used for land cover classification applications. Data range and Intensity, (strength of the backscattered signals measured by the LiDAR systems), are affected by the flying height, the ground elevation, scanning angle and the physical characteristics of the objects surface. These effects may lead to uneven distribution of point cloud or some gaps that may affect the classification process. Researchers have investigated the conversion of LiDAR range point data to raster image for terrain modelling. Interpolation techniques have been used to achieve the best representation of surfaces, and to fill the gaps between the LiDAR footprints. Interpolation methods are also investigated to generate LiDAR range and intensity image data for land cover classification applications. In this paper, different approach has been followed to classifying the LiDAR data (range and intensity) for land cover mapping. The methodology relies on the classification of the point cloud data based on their range and intensity and then converted the classified points into raster image. The gaps in the data are filled based on the classes of the nearest neighbour. Land cover maps are produced using two approaches using: (a) the conventional raster image data based on point interpolation; and (b) the proposed point data classification. A study area covering an urban district in Burnaby, British Colombia, Canada, is selected to compare the results of the two approaches. Five different land cover classes can be distinguished in that area: buildings, roads and parking areas, trees, low vegetation (grass), and bare soil. The results show that an improvement of around 10 % in the

NOAA Seamless Raster Navigational Charts (RNC)

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National Oceanic and Atmospheric Administration, Department of Commerce — The NOAA Seamless Raster Chart Server provides a seamless collarless mosaic of the NOAA Raster Navigational Charts (RNC). The RNC are a collection of approximately...

Designing a New Raster Sub-System for GRASS-7

Directory of Open Access Journals (Sweden)

Martin Hruby

2012-03-01

Full Text Available The paper deals with a design of a new raster sub-system intended for modern GIS systems open for client and server operation, database connection and strong application interface (API. Motivation for such a design comes from the current state of API working in GRASS 6. If found attractive, the here presented design and its implementation (referred as RG7 may be integrated to the future new generation of the GRASS Geographical Information System version 7-8. The paper describes in details the concept of raster tiling, computer storage of rasters and basic raster access procedures. Finally, the paper gives a simple benchmarking experiment of random read access to raster files imported from the Spearfish dataset. The experiment compares the early implementation of RG7 with the current implementation of rasters in GRASS 6. As the result, the experiment shows the RG7 to be significantly faster than GRASS in random read access to large raster files.

Mixed raster content segmentation, compression, transmission

CERN Document Server

Pavlidis, George

2017-01-01

This book presents the main concepts in handling digital images of mixed content, traditionally referenced as mixed raster content (MRC), in two main parts. The first includes introductory chapters covering the scientific and technical background aspects, whereas the second presents a set of research and development approaches to tackle key issues in MRC segmentation, compression and transmission. The book starts with a review of color theory and the mechanism of color vision in humans. In turn, the second chapter reviews data coding and compression methods so as to set the background and demonstrate the complexity involved in dealing with MRC. Chapter three addresses the segmentation of images through an extensive literature review, which highlights the various approaches used to tackle MRC segmentation. The second part of the book focuses on the segmentation of color images for optimized compression, including multi-layered decomposition and representation of MRC and the processes that can be employed to op...

Fast generation of multiple resolution instances of raster data sets

NARCIS (Netherlands)

Arge, L.; Haverkort, H.J.; Tsirogiannis, C.P.

2012-01-01

In many GIS applications it is important to study the characteristics of a raster data set at multiple resolutions. Often this is done by generating several coarser resolution rasters from a fine resolution raster. In this paper we describe efficient algorithms for different variants of this

Designing Raster Cells as the Basis for Developing Personal Graphic Language

Directory of Open Access Journals (Sweden)

Jana Z. Vujić

2011-05-01

Full Text Available Continuous work in creating new designer solutions points towards the need to create personal routines as personalcommunication in the relation comprising design, algorithms, and original computer graphics. This paper showsprocedures for developing a control language for creating graphic designs with individual raster elements (screeningelement obtaint by halftoning. Personal commands should set routines in a language understood by the printer andthe designer. The PostScript basis is used because we mix vector and pixel graphics in the same program stream, aswell as different colour systems, and our own raster forms. The printing raster is set with the target of special designmulti-use, and this includes the field of security graphics and art computer reproduction. Each raster form assumesmodifications, creating their raster family. The raster cell content is transformed with PostScript, allowing the settingof basic values, angle and liniature for each pixel separately. Raster cells are mixed in multi-colour graphics to thelevel of individual designs with variable values of parameters determining them.

Fast generation of multiple resolution instances of raster data sets

DEFF Research Database (Denmark)

Arge, Lars; Haverkort, Herman; Tsirogiannis, Constantinos

2012-01-01

In many GIS applications it is important to study the characteristics of a raster data set at multiple resolutions. Often this is done by generating several coarser resolution rasters from a fine resolution raster. In this paper we describe efficient algorithms for different variants of this prob......In many GIS applications it is important to study the characteristics of a raster data set at multiple resolutions. Often this is done by generating several coarser resolution rasters from a fine resolution raster. In this paper we describe efficient algorithms for different variants...... in the main memory of the computer. We also provide two algorithms that solve this problem in external memory, that is when the input raster is larger than the main memory. The first external algorithm is very easy to implement and requires O(sort(N)) data block transfers from/to the external memory....... For this variant we describe an algorithm that runs in (U logN) time in internal memory, where U is the size of the output. We show how this algorithm can be adapted to perform efficiently in the external memory using O(sort(U)) data transfers from the disk. We have also implemented two of the presented algorithms...

Slow beam raster system at CEBAF

International Nuclear Information System (INIS)

Yan, C.; Beaufait, J.; Carlini, R.; Cuevas, C.; Vulcan, W.; Wines, R.

1994-01-01

A bedstead air-core raster magnet is being installed now, it will be used at CEBAF to scan the beam on the Hall C polarized target and the beam dump with fixed frequency 60 Hz in horizontal, 103.4 Hz in vertical. The x and y raster magnets are driven by Variac transformer and SUMIT-OMO inverter respectively. Both of them provide an approximate sine current waveform with peak current 20 A, corresponding to a maximum deflection angle 1 mr

Estimating Prediction Uncertainty from Geographical Information System Raster Processing: A User's Manual for the Raster Error Propagation Tool (REPTool)

Science.gov (United States)

Gurdak, Jason J.; Qi, Sharon L.; Geisler, Michael L.

2009-01-01

The U.S. Geological Survey Raster Error Propagation Tool (REPTool) is a custom tool for use with the Environmental System Research Institute (ESRI) ArcGIS Desktop application to estimate error propagation and prediction uncertainty in raster processing operations and geospatial modeling. REPTool is designed to introduce concepts of error and uncertainty in geospatial data and modeling and provide users of ArcGIS Desktop a geoprocessing tool and methodology to consider how error affects geospatial model output. Similar to other geoprocessing tools available in ArcGIS Desktop, REPTool can be run from a dialog window, from the ArcMap command line, or from a Python script. REPTool consists of public-domain, Python-based packages that implement Latin Hypercube Sampling within a probabilistic framework to track error propagation in geospatial models and quantitatively estimate the uncertainty of the model output. Users may specify error for each input raster or model coefficient represented in the geospatial model. The error for the input rasters may be specified as either spatially invariant or spatially variable across the spatial domain. Users may specify model output as a distribution of uncertainty for each raster cell. REPTool uses the Relative Variance Contribution method to quantify the relative error contribution from the two primary components in the geospatial model - errors in the model input data and coefficients of the model variables. REPTool is appropriate for many types of geospatial processing operations, modeling applications, and related research questions, including applications that consider spatially invariant or spatially variable error in geospatial data.

BOREAS TGB-12 Soil Carbon and Flux Data of NSA-MSA in Raster Format

Science.gov (United States)

Hall, Forrest G. (Editor); Knapp, David E. (Editor); Rapalee, Gloria; Davidson, Eric; Harden, Jennifer W.; Trumbore, Susan E.; Veldhuis, Hugo

2000-01-01

The BOREAS TGB-12 team made measurements of soil carbon inventories, carbon concentration in soil gases, and rates of soil respiration at several sites. This data set provides: (1) estimates of soil carbon stocks by horizon based on soil survey data and analyses of data from individual soil profiles; (2) estimates of soil carbon fluxes based on stocks, fire history, drain-age, and soil carbon inputs and decomposition constants based on field work using radiocarbon analyses; (3) fire history data estimating age ranges of time since last fire; and (4) a raster image and an associated soils table file from which area-weighted maps of soil carbon and fluxes and fire history may be generated. This data set was created from raster files, soil polygon data files, and detailed lab analysis of soils data that were received from Dr. Hugo Veldhuis, who did the original mapping in the field during 1994. Also used were soils data from Susan Trumbore and Jennifer Harden (BOREAS TGB-12). The binary raster file covers a 733-km 2 area within the NSA-MSA.

Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams

Energy Technology Data Exchange (ETDEWEB)

Coquelle, Nicolas [Université Grenoble Alpes, IBS, 38044 Grenoble (France); CNRS, IBS, 38044 Grenoble (France); CEA, IBS, 38044 Grenoble (France); Brewster, Aaron S. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Kapp, Ulrike; Shilova, Anastasya; Weinhausen, Britta [European Synchrotron Radiation Facility, BP 220, 38043 Grenoble (France); Burghammer, Manfred, E-mail: burgham@esrf.fr [European Synchrotron Radiation Facility, BP 220, 38043 Grenoble (France); Ghent University, Ghent B-9000 (Belgium); Colletier, Jacques-Philippe, E-mail: burgham@esrf.fr [Université Grenoble Alpes, IBS, 38044 Grenoble (France); CNRS, IBS, 38044 Grenoble (France); CEA, IBS, 38044 Grenoble (France)

2015-05-01

A raster scanning serial protein crystallography approach is presented, that consumes as low ∼200–700 nl of sedimented crystals. New serial data pre-analysis software, NanoPeakCell, is introduced. High-resolution structural information was obtained from lysozyme microcrystals (20 µm in the largest dimension) using raster-scanning serial protein crystallography on micro- and nano-focused beamlines at the ESRF. Data were collected at room temperature (RT) from crystals sandwiched between two silicon nitride wafers, thereby preventing their drying, while limiting background scattering and sample consumption. In order to identify crystal hits, new multi-processing and GUI-driven Python-based pre-analysis software was developed, named NanoPeakCell, that was able to read data from a variety of crystallographic image formats. Further data processing was carried out using CrystFEL, and the resultant structures were refined to 1.7 Å resolution. The data demonstrate the feasibility of RT raster-scanning serial micro- and nano-protein crystallography at synchrotrons and validate it as an alternative approach for the collection of high-resolution structural data from micro-sized crystals. Advantages of the proposed approach are its thriftiness, its handling-free nature, the reduced amount of sample required, the adjustable hit rate, the high indexing rate and the minimization of background scattering.

Visible spectroscopy in the DIII-D divertor

International Nuclear Information System (INIS)

Brooks, N.H.; Fehling, D.; Hillis, D.L.; Klepper, C.C.; Naumenko, N.; Tugarinov, S.; Whyte, D.G.

1996-06-01

Spectroscopy measurements in the DIII-D divertor have been carried out with a survey spectrometer which provides simultaneous registration of the visible spectrum over the region 400--900 nm with a resolution of 0.2 nm. Broad spectral coverage is achieved through use of a fiberoptic transformer assembly to map the curved focal plane of a fast (f/3) Rowland spectrograph into a rastered format on the rectangular sensor area of a two-dimensional CCD camera. Vertical grouping of pixels during CCD readout integrates the signal intensity over the height of each spectral segment in the rastered image, minimizing readout time. For the full visible spectrum, readout time is 50 ms. Faster response time (< 10 ms) may be obtained by selecting for readout just a small number of the twenty spectral segments in the image on the CCD. Simultaneous recording of low charge states of carbon, oxygen and injected impurities has yielded information about gas recycling and impurity behavior at the divertor strike points. Transport of lithium to the divertor region during lithium pellet injection has been studied, as well as cumulative deposition of lithium on the divertor targets from pellet injection over many successive discharges

Combining satellite photographs and raster lidar data for channel connectivity in tidal marshes.

Science.gov (United States)

Li, Zhi; Hodges, Ben

2017-04-01

High resolution airborne lidar is capable of providing topographic detail down to the 1 x 1 m scale or finer over large tidal marshes of a river delta. Such data sets can be challenging to develop and ground-truth due to the inherent complexities of the environment, the relatively small changes in elevation throughout a marsh, and practical difficulties in accessing the variety of flooded, dry, and muddy regions. Standard lidar point-cloud processing techniques (as typically applied in large lidar data collection program) have a tendency to mis-identify narrow channels and water connectivity in a marsh, which makes it difficult to directly use such data for modeling marsh flows. Unfortunately, it is not always practical, or even possible, to access the point cloud and re-analyze the raw lidar data when discrepancies have been found in a raster work product. Faced with this problem in preparing a model of the Trinity River delta (Texas, USA), we developed an approach to integrating analysis of a lidar-based raster with satellite images. Our primary goal was to identify the clear land/water boundaries needed to identify channelization in the available rasterized lidar data. The channel extraction method uses pixelized satellite photographs that are stretched/distorted with image-processing techniques to match identifiable control features in both lidar and photographic data sets. A kmeans clustering algorithm was applied cluster pixels based on their colors, which is effective in separating land and water in a satellite photograph. The clustered image was matched to the lidar data such that the combination shows the channel network. In effect, we are able to use the fact that the satellite photograph is higher resolution than the lidar data, and thus provides connectivity in the clustering at a finer scale. The principal limitation of the method is the where the satellite image and lidar suffer from similar problems For example, vegetation overhanging a narrow

Imaging melanin cancer growth in-vivo using raster-scan optoacoustic mesoscopy (RSOM) at 50 MHz and 100 MHz

Science.gov (United States)

Omar, Murad; Schwarz, Mathias; Soliman, Dominik; Symvoulidis, Panagiotis; Ntziachristos, Vasilis

2016-03-01

We used raster-scan optoacoustic mesoscopy (RSOM) at 50 MHz, and at 100 MHz, to monitor tumor growth, and tumor angiogenesis, which is a central hallmark of cancer, in-vivo. In this study we compared the performance, and the effect of the 50 MHz, and the 100 MHz frequencies on the quality of the final image. The system is based on a reflection-mode implementation of RSOM. The detectors used are custom made, ultrawideband, and spherically focused. The use of such detectors enables light coupling from the same side as the detector, thus reflection-mode. Light is in turn coupled using a fiber bundle, and the detector is raster scanned in the xy-plane. Subsequently, to retrieve small features, the raw data are reconstructed using a multi-bandwidth, beamforming reconstruction algorithm. Comparison of the system performance at the different frequencies shows as expected a higher resolution in case of the 100 MHz detector compared to the 50 MHz. On the other hand the 50 MHz has a better SNR, can detect features from deeper layers, and has higher angular acceptance. Based on these characteristics the 50 MHz detector was mostly used. After comparing the performance we monitored the growth of B16F10 cells, melanin tumor, over the course of 9 days. We see correspondence between the optoacoustic measurements and the cryoslice validations. Additionally, in areas close to the tumor we see sprouting of new vessels, starting at day 4-5, which corresponds to tumor angiogenesis.

Technical Report on Raster field test at a Water Board

NARCIS (Netherlands)

Vriezekolk, E.

Risk assessment of unavailability of telecommunication services is an important part of an organisation’s business continuity management. We developed the Raster method to enable organisations to assess their telecommunication service unavailability risks. To validate Raster in practice we conducted

Special raster scanning for reduction of charging effects in scanning electron microscopy.

Science.gov (United States)

Suzuki, Kazuhiko; Oho, Eisaku

2014-01-01

A special raster scanning (SRS) method for reduction of charging effects is developed for the field of SEM. Both a conventional fast scan (horizontal direction) and an unusual scan (vertical direction) are adopted for acquiring raw data consisting of many sub-images. These data are converted to a proper SEM image using digital image processing techniques. About sharpness of the image and reduction of charging effects, the SRS is compared with the conventional fast scan (with frame-averaging) and the conventional slow scan. Experimental results show the effectiveness of SRS images. By a successful combination of the proposed scanning method and low accelerating voltage (LV)-SEMs, it is expected that higher-quality SEM images can be more easily acquired by the considerable reduction of charging effects, while maintaining the resolution. © 2013 Wiley Periodicals, Inc.

Imaging spectroscopy for characterisation of grass swards

NARCIS (Netherlands)

Schut, A.G.T.

2003-01-01

Keywords: Imaging spectroscopy, imaging spectrometry, remote sensing, reflection, reflectance, grass sward, white clover, recognition, characterisation, ground cover, growth monitoring, stress detection, heterogeneity quantification

The potential of imaging spectroscopy as a tool for

A Raster Based Approach To Solar Pressure Modeling

Science.gov (United States)

Wright, Theodore

2014-01-01

The impact of photons upon a spacecraft introduces small forces and moments. The magnitude and direction of the forces depend on the material properties of the spacecraft components being illuminated. Which components are being lit depends on the orientation of the craft with respect to the Sun as well as the gimbal angles for any significant moving external parts (solar arrays, typically). Some components may shield others from the Sun.To determine solar pressure in the presence overlapping components, a 3D model can be used to determine which components are illuminated. A view (image) of the model as seen from the Sun shows the only contributors to solar pressure. This image can be decomposed into pixels, each of which can be treated as a non-overlapping flat plate as far as solar pressure calculations are concerned. The sums of the pressures and moments on these plates approximate the solar pressure and moments on the entire vehicle.The image rasterization technique can also be used to compute other spacecraft attributes that are dependent on attitude and geometry, including solar array power generation capability and free molecular flow drag.

Volumetric three-dimensional display system with rasterization hardware

Science.gov (United States)

Favalora, Gregg E.; Dorval, Rick K.; Hall, Deirdre M.; Giovinco, Michael; Napoli, Joshua

2001-06-01

An 8-color multiplanar volumetric display is being developed by Actuality Systems, Inc. It will be capable of utilizing an image volume greater than 90 million voxels, which we believe is the greatest utilizable voxel set of any volumetric display constructed to date. The display is designed to be used for molecular visualization, mechanical CAD, e-commerce, entertainment, and medical imaging. As such, it contains a new graphics processing architecture, novel high-performance line- drawing algorithms, and an API similar to a current standard. Three-dimensional imagery is created by projecting a series of 2-D bitmaps ('image slices') onto a diffuse screen that rotates at 600 rpm. Persistence of vision fuses the slices into a volume-filling 3-D image. A modified three-panel Texas Instruments projector provides slices at approximately 4 kHz, resulting in 8-color 3-D imagery comprised of roughly 200 radially-disposed slices which are updated at 20 Hz. Each slice has a resolution of 768 by 768 pixels, subtending 10 inches. An unusual off-axis projection scheme incorporating tilted rotating optics is used to maintain good focus across the projection screen. The display electronics includes a custom rasterization architecture which converts the user's 3- D geometry data into image slices, as well as 6 Gbits of DDR SDRAM graphics memory.

Height drift correction in non-raster atomic force microscopy

Energy Technology Data Exchange (ETDEWEB)

Meyer, Travis R. [Department of Mathematics, University of California Los Angeles, Los Angeles, CA 90095 (United States); Ziegler, Dominik [Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Brune, Christoph [Institute for Computational and Applied Mathematics, University of Münster (Germany); Chen, Alex [Statistical and Applied Mathematical Sciences Institute, Research Triangle Park, NC 27709 (United States); Farnham, Rodrigo; Huynh, Nen; Chang, Jen-Mei [Department of Mathematics and Statistics, California State University Long Beach, Long Beach, CA 90840 (United States); Bertozzi, Andrea L., E-mail: bertozzi@math.ucla.edu [Department of Mathematics, University of California Los Angeles, Los Angeles, CA 90095 (United States); Ashby, Paul D., E-mail: pdashby@lbl.gov [Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)

2014-02-01

We propose a novel method to detect and correct drift in non-raster scanning probe microscopy. In conventional raster scanning drift is usually corrected by subtracting a fitted polynomial from each scan line, but sample tilt or large topographic features can result in severe artifacts. Our method uses self-intersecting scan paths to distinguish drift from topographic features. Observing the height differences when passing the same position at different times enables the reconstruction of a continuous function of drift. We show that a small number of self-intersections is adequate for automatic and reliable drift correction. Additionally, we introduce a fitness function which provides a quantitative measure of drift correctability for any arbitrary scan shape. - Highlights: • We propose a novel height drift correction method for non-raster SPM. • Self-intersecting scans enable the distinction of drift from topographic features. • Unlike conventional techniques our method is unsupervised and tilt-invariant. • We introduce a fitness measure to quantify correctability for general scan paths.

Fishing Revenue-Intensity Raster Database, 2007-2012

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — These revenue-intensity rasters were built as part of an effort to improve upon the spatial precision of self-reported Vessel Trip Report (VTR) fishing locations....

LandSat-Based Land Use-Land Cover (Raster)

Data.gov (United States)

Minnesota Department of Natural Resources — Raster-based land cover data set derived from 30 meter resolution Thematic Mapper satellite imagery. Classification is divided into 16 classes with source imagery...

A Comparison of Vector and Raster GIS Methods for Calculating Landscape Metrics Used in Environmental Assessments

Science.gov (United States)

Timothy G. Wade; James D. Wickham; Maliha S. Nash; Anne C. Neale; Kurt H. Riitters; K. Bruce Jones

2003-01-01

AbstractGIS-based measurements that combine native raster and native vector data are commonly used in environmental assessments. Most of these measurements can be calculated using either raster or vector data formats and processing methods. Raster processes are more commonly used because they can be significantly faster computationally...

FTCRP: file format for the device-independent transfer of colored raster pictures

Science.gov (United States)

Hofmann, Georg R.; Kromker, Detlef

1989-04-01

Research institutes, industrial companies, computer animation studios and printing facilities are often equipped with a lot of different machines for the rendering and display of raster pictures. The output devices (monitors, recording devices, printers) differ in their geometric and color resolution, in the picture format, and in the chromaticity of the color primaries. There is a need to transfer pictures via local networks (LAN) from one device to another at studios and laboratories without having to compromise for the quality of the pictures. And there is a need to transfer pictures via tape, floppy or networks (WAN) from one institute to another, or from an institute to the publisher, and so forth. For these purposes, a special format for the transfer of raster pictures has been developed which is independent of differences in pixel resolution, color resolution, color primaries, number of colors per device, and scan direction. For its use in the networks and on tapes, the file format has to initially have a character encoding to prevent any collision of pixel or image data with control sequences of terminal servers, network controllers, and other hardware devices. Binary encodings are still to be developed; the format is open for different data compressions and other data encodings according to different application profiles. The format is called FTCRP - File for the Transfer of Colored Raster Pictures. Historically, a Version 0 of FTCRP was first developed. Several insights were gained in the imple-mentation of FTCRP driver programs and in the acceptance of the new format. Here, we present the conception of Version 1 of FTCRP, which is an extension and an enhancement of the former version. Unfortunately, the syntax of FTCRP Version 1 was not definitivly determined before the submission of this text. Therefore we concentrate on conceptual considerations. This paper is intended to encourage further discussion and refinements.

Autofluorescence Imaging and Spectroscopy of Human Lung Cancer

Directory of Open Access Journals (Sweden)

Mengyan Wang

2016-12-01

Full Text Available Lung cancer is one of the most common cancers, with high mortality rate worldwide. Autofluorescence imaging and spectroscopy is a non-invasive, label-free, real-time technique for cancer detection. In this study, lung tissue sections excised from patients were detected by laser scan confocal microscopy and spectroscopy. The autofluorescence images demonstrated the cellular morphology and tissue structure, as well as the pathology of stained images. Based on the spectra study, it was found that the majority of the patients showed discriminating fluorescence in tumor tissues from normal tissues. Therefore, autofluorescence imaging and spectroscopy may be a potential method for aiding the diagnosis of lung cancer.

Speeding up the Raster Scanning Methods used in theX-Ray Fluorescence Imaging of the Ancient Greek Text of Archimedes

Energy Technology Data Exchange (ETDEWEB)

Turner, Manisha; /Norfolk State U.

2006-08-24

Progress has been made at the Stanford Linear Accelerator Center (SLAC) toward deciphering the remaining 10-20% of ancient Greek text contained in the Archimedes palimpsest. The text is known to contain valuable works by the mathematician, including the ''Method of Mechanical Theorems, the Equilibrium of Planes, On Floating Bodies'', and several diagrams as well. The only surviving copy of the text was recycled into a prayer book in the Middle Ages. The ink used to write on the goat skin parchment is partly composed of iron, which is visible by x-ray radiation. To image the palimpsest pages, the parchment is framed and placed in a stage that moves according to the raster method. When an x-ray beam strikes the parchment, the iron in the ink is detected by a germanium detector. The resulting signal is converted to a gray-scale image on the imaging program, Rasplot. It is extremely important that each line of data is perfectly aligned with the line that came before it because the image is scanned in two directions. The objectives of this experiment were to determine the best parameters for producing well-aligned images and to reduce the scanning time. Imaging half a page of parchment during previous beam time for this project was achieved in thirty hours. Equations were produced to evaluate count time, shutter time, and the number of pixels in this experiment. On Beamline 6-2 at the Stanford Synchrotron Radiation Laboratory (SSRL), actual scanning time was reduced by one fourth. The remaining pages were successfully imaged and sent to ancient Greek experts for translation.

Speeding up the Raster Scanning Methods used in the X-Ray Fluorescence Imaging of the Ancient Greek Text of Archimedes

International Nuclear Information System (INIS)

Turner, Manisha; Norfolk State U.

2006-01-01

Progress has been made at the Stanford Linear Accelerator Center (SLAC) toward deciphering the remaining 10-20% of ancient Greek text contained in the Archimedes palimpsest. The text is known to contain valuable works by the mathematician, including the ''Method of Mechanical Theorems, the Equilibrium of Planes, On Floating Bodies'', and several diagrams as well. The only surviving copy of the text was recycled into a prayer book in the Middle Ages. The ink used to write on the goat skin parchment is partly composed of iron, which is visible by x-ray radiation. To image the palimpsest pages, the parchment is framed and placed in a stage that moves according to the raster method. When an x-ray beam strikes the parchment, the iron in the ink is detected by a germanium detector. The resulting signal is converted to a gray-scale image on the imaging program, Rasplot. It is extremely important that each line of data is perfectly aligned with the line that came before it because the image is scanned in two directions. The objectives of this experiment were to determine the best parameters for producing well-aligned images and to reduce the scanning time. Imaging half a page of parchment during previous beam time for this project was achieved in thirty hours. Equations were produced to evaluate count time, shutter time, and the number of pixels in this experiment. On Beamline 6-2 at the Stanford Synchrotron Radiation Laboratory (SSRL), actual scanning time was reduced by one fourth. The remaining pages were successfully imaged and sent to ancient Greek experts for translation

Georeferenced Population Datasets of Mexico (GEO-MEX): Raster Based GIS Coverage of Mexican Population

Data.gov (United States)

National Aeronautics and Space Administration — The Raster Based GIS Coverage of Mexican Population is a gridded coverage (1 x 1 km) of Mexican population. The data were converted from vector into raster. The...

Depth sectioning using electron energy loss spectroscopy

International Nuclear Information System (INIS)

D'Alfonso, A J; Findlay, S D; Allen, L J; Cosgriff, E C; Kirkland, A I; Nellist, P D; Oxley, M P

2008-01-01

The continued development of electron probe aberration correctors for scanning transmission electron microscopy has enabled finer electron probes, allowing atomic resolution column-by-column electron energy loss spectroscopy. Finer electron probes have also led to a decrease in the probe depth of focus, facilitating optical slicing or depth sectioning of samples. The inclusion of post specimen aberration corrected image forming lenses allows for scanning confocal electron microscopy with further improved depth resolution and selectivity. We show that in both scanning transmission electron microscopy and scanning confocal electron microscopy geometries, by performing a three dimensional raster scan through a specimen and detecting electrons scattered with a characteristic energy loss, it will be possible to determine the location of isolated impurities embedded within the bulk.

USGS 24k Digital Raster Graphic (DRG) Metadata

Data.gov (United States)

Minnesota Department of Natural Resources — Metadata for the scanned USGS 24k Topograpic Map Series (also known as 24k Digital Raster Graphic). Each scanned map is represented by a polygon in the layer and the...

Development of a raster electronics system for expanding the APT proton beam

Energy Technology Data Exchange (ETDEWEB)

Chapelle, S.; Hubbard, E.L.; Smith, T.L. [General Atomics, San Diego, CA (United States); Schulze, M.E.; Shafer, R.E. [General Atomics, Los Alamos, NM (United States)

1998-12-31

A 1700 MeV, 100 mA proton linear accelerator is being designed for Accelerator Production of Tritium (APT). A beam expansion system is required to uniformly irradiate a 19 x 190 cm tritium production target. This paper describes a beam expansion system consisting of eight ferrite dipole magnets to raster the beam in the x- and y-planes and also describes the salient features of the design of the electronics that are unique to the expander. Eight Insulated Gate Bipolar Transistor (IGBT)-based modulators drive the raster magnets with triangular current waveforms that are synchronized using phase-locked loops (PLLs) and voltage controlled crystal oscillators (VCXOs). Fault detection circuitry shuts down the beam before the target can be damaged by a failure of the raster system. Test data are presented for the prototype system.

Optical imaging and spectroscopy

CERN Document Server

Brady, David J

2009-01-01

An essential reference for optical sensor system design This is the first text to present an integrated view of the optical and mathematical analysis tools necessary to understand computational optical system design. It presents the foundations of computational optical sensor design with a focus entirely on digital imaging and spectroscopy. It systematically covers: Coded aperture and tomographic imaging Sampling and transformations in optical systems, including wavelets and generalized sampling techniques essential to digital system analysis Geometric, wave, and statis

Target raster system at CEBAF

International Nuclear Information System (INIS)

Yan, C.; Adderley, P.; Carlini, R.; Cuevas, C.; Vulcan, W.; Wines, R.

1995-01-01

A fast raster (FR) system consisting of two Litz cable air-core magnets (x, y) has been installed and tested in the Hall C beam line tunnel, 21 m from the cryogenic target. The system provides a maximum deflection of 0.06 mrad at a frequency range of 15-45 kHz for a 6 GeV electron beam. The FR magnets are driven by a MOSFET bipolar switching power source with a triangle current waveform, the peak-to-peak current is 40 A. (orig.)

Image correlation spectroscopy: mapping correlations in space, time, and reciprocal space.

Science.gov (United States)

Wiseman, Paul W

2013-01-01

This chapter presents an overview of two recent implementations of image correlation spectroscopy (ICS). The background theory is presented for spatiotemporal image correlation spectroscopy and image cross-correlation spectroscopy (STICS and STICCS, respectively) as well as k-(reciprocal) space image correlation spectroscopy (kICS). An introduction to the background theory is followed by sections outlining procedural aspects for properly implementing STICS, STICCS, and kICS. These include microscopy image collection, sampling in space and time, sample and fluorescent probe requirements, signal to noise, and background considerations that are all required to properly implement the ICS methods. Finally, procedural steps for immobile population removal and actual implementation of the ICS analysis programs to fluorescence microscopy image time stacks are described. Copyright © 2013 Elsevier Inc. All rights reserved.

Fast Computation of Categorical Richness on Raster Data Sets and Related Problems

DEFF Research Database (Denmark)

de Berg, Mark; Tsirogiannis, Constantinos; Wilkinson, Bryan

2015-01-01

that runs in O(n) time and one for circular windows that runs in O((1+K/r)n) time, where K is the number of different categories appearing in G. The algorithms are not only very efficient in theory, but also in practice: our experiments show that our algorithms can handle raster data sets of hundreds...... of millions of cells. The categorical richness problem is related to colored range counting, where the goal is to preprocess a colored point set such that we can efficiently count the number of colors appearing inside a query range. We present a data structure for colored range counting in R^2 for the case......In many scientific fields, it is common to encounter raster data sets consisting of categorical data, such as soil type or land usage of a terrain. A problem that arises in the presence of such data is the following: given a raster G of n cells storing categorical data, compute for every cell c...

The EnMAP Spaceborne Imaging Spectroscopy Mission for Earth Observation

Directory of Open Access Journals (Sweden)

Luis Guanter

2015-07-01

Full Text Available Imaging spectroscopy, also known as hyperspectral remote sensing, is based on the characterization of Earth surface materials and processes through spectrally-resolved measurements of the light interacting with matter. The potential of imaging spectroscopy for Earth remote sensing has been demonstrated since the 1980s. However, most of the developments and applications in imaging spectroscopy have largely relied on airborne spectrometers, as the amount and quality of space-based imaging spectroscopy data remain relatively low to date. The upcoming Environmental Mapping and Analysis Program (EnMAP German imaging spectroscopy mission is intended to fill this gap. An overview of the main characteristics and current status of the mission is provided in this contribution. The core payload of EnMAP consists of a dual-spectrometer instrument measuring in the optical spectral range between 420 and 2450 nm with a spectral sampling distance varying between 5 and 12 nm and a reference signal-to-noise ratio of 400:1 in the visible and near-infrared and 180:1 in the shortwave-infrared parts of the spectrum. EnMAP images will cover a 30 km-wide area in the across-track direction with a ground sampling distance of 30 m. An across-track tilted observation capability will enable a target revisit time of up to four days at the Equator and better at high latitudes. EnMAP will contribute to the development and exploitation of spaceborne imaging spectroscopy applications by making high-quality data freely available to scientific users worldwide.

Mapping Fire Severity Using Imaging Spectroscopy and Kernel Based Image Analysis

Science.gov (United States)

Prasad, S.; Cui, M.; Zhang, Y.; Veraverbeke, S.

2014-12-01

Improved spatial representation of within-burn heterogeneity after wildfires is paramount to effective land management decisions and more accurate fire emissions estimates. In this work, we demonstrate feasibility and efficacy of airborne imaging spectroscopy (hyperspectral imagery) for quantifying wildfire burn severity, using kernel based image analysis techniques. Two different airborne hyperspectral datasets, acquired over the 2011 Canyon and 2013 Rim fire in California using the Airborne Visible InfraRed Imaging Spectrometer (AVIRIS) sensor, were used in this study. The Rim Fire, covering parts of the Yosemite National Park started on August 17, 2013, and was the third largest fire in California's history. Canyon Fire occurred in the Tehachapi mountains, and started on September 4, 2011. In addition to post-fire data for both fires, half of the Rim fire was also covered with pre-fire images. Fire severity was measured in the field using Geo Composite Burn Index (GeoCBI). The field data was utilized to train and validate our models, wherein the trained models, in conjunction with imaging spectroscopy data were used for GeoCBI estimation wide geographical regions. This work presents an approach for using remotely sensed imagery combined with GeoCBI field data to map fire scars based on a non-linear (kernel based) epsilon-Support Vector Regression (e-SVR), which was used to learn the relationship between spectra and GeoCBI in a kernel-induced feature space. Classification of healthy vegetation versus fire-affected areas based on morphological multi-attribute profiles was also studied. The availability of pre- and post-fire imaging spectroscopy data over the Rim Fire provided a unique opportunity to evaluate the performance of bi-temporal imaging spectroscopy for assessing post-fire effects. This type of data is currently constrained because of limited airborne acquisitions before a fire, but will become widespread with future spaceborne sensors such as those on

iRaster: a novel information visualization tool to explore spatiotemporal patterns in multiple spike trains.

Science.gov (United States)

Somerville, J; Stuart, L; Sernagor, E; Borisyuk, R

2010-12-15

Over the last few years, simultaneous recordings of multiple spike trains have become widely used by neuroscientists. Therefore, it is important to develop new tools for analysing multiple spike trains in order to gain new insight into the function of neural systems. This paper describes how techniques from the field of visual analytics can be used to reveal specific patterns of neural activity. An interactive raster plot called iRaster has been developed. This software incorporates a selection of statistical procedures for visualization and flexible manipulations with multiple spike trains. For example, there are several procedures for the re-ordering of spike trains which can be used to unmask activity propagation, spiking synchronization, and many other important features of multiple spike train activity. Additionally, iRaster includes a rate representation of neural activity, a combined representation of rate and spikes, spike train removal and time interval removal. Furthermore, it provides multiple coordinated views, time and spike train zooming windows, a fisheye lens distortion, and dissemination facilities. iRaster is a user friendly, interactive, flexible tool which supports a broad range of visual representations. This tool has been successfully used to analyse both synthetic and experimentally recorded datasets. In this paper, the main features of iRaster are described and its performance and effectiveness are demonstrated using various types of data including experimental multi-electrode array recordings from the ganglion cell layer in mouse retina. iRaster is part of an ongoing research project called VISA (Visualization of Inter-Spike Associations) at the Visualization Lab in the University of Plymouth. The overall aim of the VISA project is to provide neuroscientists with the ability to freely explore and analyse their data. The software is freely available from the Visualization Lab website (see www.plymouth.ac.uk/infovis). Copyright © 2010

BOREAS TE-20 Soils Data Over the NSA-MSA and Tower Sites in Raster Format

Science.gov (United States)

Hall, Forrest G. (Editor); Veldhuis, Hugo; Knapp, David; Veldhuis, Hugo

2000-01-01

The BOREAS TE-20 team collected several data sets for use in developing and testing models of forest ecosystem dynamics. This data set was gridded from vector layers of soil maps that were received from Dr. Hugo Veldhuis, who did the original mapping in the field during 1994. The vector layers were gridded into raster files that cover the NSA-MSA and tower sites. The data are stored in binary, image format files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Center (DAAC).

Passive millimeter wave imaging and spectroscopy system for terrestrial remote sensing

Science.gov (United States)

Gopalsami, Nachappa; Liao, Shaolin; Koehl, Eugene R.; Elmer, Thomas W.; Heifetz, Alexander; Chien, Hual-Te; Raptis, Apostolos C.

2010-04-01

We have built a passive millimeter wave imaging and spectroscopy system with a 15-channel filter bank in the 146-154 GHz band for terrestrial remote sensing. We had built the spectroscopy system first and have now retrofitted an imaging element to it as a single pixel imager. The imaging element consisted of a 15-cm-diameter imaging lens fed to a corrugated scalar horn. Image acquisition is carried out by scanning the lens with a 2-axis translation stage. A LabVIEW-based software program integrates the imaging and spectroscopy systems with online display of spectroscopic information while the system scans each pixel position. The software also allows for integrating the image intensity of all 15 channels to increase the signal-to-noise ratio by a factor of ~4 relative to single channel image. The integrated imaging and spectroscopy system produces essentially 4-D data in which spatial data are along 2 dimensions, spectral data are in the 3rd dimension, and time is the 4th dimension. The system performance was tested by collecting imaging and spectral data with a 7.5-cm-diameter and 1m long gas cell in which test chemicals were introduced against a liquid nitrogen background.

BOREAS Forest Cover Data Layers of the NSA in Raster Format

Science.gov (United States)

Hall, Forrest G. (Editor); Knapp, David; Tuinhoff, Manning

2000-01-01

This data set was processed by BORIS staff from the original vector data of species, crown closure, cutting class, and site classification/subtype into raster files. The original polygon data were received from Linnet Graphics, the distributor of data for MNR. In the case of the species layer, the percentages of species composition were removed. This reduced the amount of information contained in the species layer of the gridded product, but it was necessary in order to make the gridded product easier to use. The original maps were produced from 1:15,840-scale aerial photography collected in 1988 over an area of the BOREAS NSA MSA. The data are stored in binary, image format files and they are available from Oak Ridge National Laboratory. The data files are available on a CD-ROM (see document number 20010000884).

Optical Spectroscopy and Imaging of Correlated Spin Orbit Phases

Science.gov (United States)

2016-06-14

Unlimited UU UU UU UU 14-06-2016 15-Mar-2013 14-Mar-2016 Final Report: Optical Spectroscopy and Imaging of Correlated Spin-Orbit Phases The views...Box 12211 Research Triangle Park, NC 27709-2211 Ultrafast optical spectroscopy , nonlinear optical spectroscopy , iridates, cuprates REPORT...California Blvd. Pasadena, CA 91125 -0001 ABSTRACT Number of Papers published in peer-reviewed journals: Final Report: Optical Spectroscopy and

A New Optical Design for Imaging Spectroscopy

Science.gov (United States)

Thompson, K. L.

2002-05-01

We present an optical design concept for imaging spectroscopy, with some advantages over current systems. The system projects monochromatic images onto the 2-D array detector(s). Faint object and crowded field spectroscopy can be reduced first using image processing techniques, then building the spectrum, unlike integral field units where one must first extract the spectra, build data cubes from these, then reconstruct the target's integrated spectral flux. Like integral field units, all photons are detected simultaneously, unlike tunable filters which must be scanned through the wavelength range of interest and therefore pay a sensitivity pentalty. Several sample designs are presented, including an instrument optimized for measuring intermediate redshift galaxy cluster velocity dispersions, one designed for near-infrared ground-based adaptive optics, and one intended for space-based rapid follow-up of transient point sources such as supernovae and gamma ray bursts.

Estimating FIA plot characteristics using NAIP imagery, function modeling, and the RMRS raster utility coding library

Science.gov (United States)

John S. Hogland; Nathaniel M. Anderson

2015-01-01

Raster modeling is an integral component of spatial analysis. However, conventional raster modeling techniques can require a substantial amount of processing time and storage space, often limiting the types of analyses that can be performed. To address this issue, we have developed Function Modeling. Function Modeling is a new modeling framework that streamlines the...

Conception and Implementation of an OGC-Compliant Sensor Observation Service for a Standardized Access to Raster Data

Directory of Open Access Journals (Sweden)

Juergen Sorg

2015-07-01

Full Text Available The target of the Open Geospatial Consortium (OGC is interoperability of geographic information, which means creating opportunities to access geodata in a consistent, standardized way. In the domain of sensor data, the target will be picked up within the OGC Sensor Web Enablement Initiative and especially reached through the Sensor Observation Service (SOS standard. This one defines a service for a standardized access to time series data and is usually used for in situ sensors (like discharge gauges and climate stations. Although the standard considers raster data, no implementation of the standard for raster data exists presently. In this paper an OGC-compliant Sensor Observation Service for a standardized access to raster data is described. A data model was developed that enables effective storage of the raster data with the corresponding metadata in a database, reading this data in an efficient way, and encoding it with result formats that the SOS-standard provides.

Food Safety Evaluation Based on Near Infrared Spectroscopy and Imaging: A Review.

Science.gov (United States)

Fu, Xiaping; Ying, Yibin

2016-08-17

In recent years, due to the increasing consciousness of food safety and human health, much progress has been made in developing rapid and nondestructive techniques for the evaluation of food hazards, food authentication, and traceability. Near infrared (NIR) spectroscopy and imaging techniques have gained wide acceptance in many fields because of their advantages over other analytical techniques. Following a brief introduction of NIR spectroscopy and imaging basics, this review mainly focuses on recent NIR spectroscopy and imaging applications for food safety evaluation, including (1) chemical hazards detection; (2) microbiological hazards detection; (3) physical hazards detection; (4) new technology-induced food safety concerns; and (5) food traceability. The review shows NIR spectroscopy and imaging to be effective tools that will play indispensable roles for food safety evaluation. In addition, on-line/real-time applications of these techniques promise to be a huge growth field in the near future.

Planning JWST NIRSpec MSA spectroscopy using NIRCam pre-images

Science.gov (United States)

Beck, Tracy L.; Ubeda, Leonardo; Kassin, Susan A.; Gilbert, Karoline; Karakla, Diane M.; Reid, I. N.; Blair, William P.; Keyes, Charles D.; Soderblom, D. R.; Peña-Guerrero, Maria A.

2016-07-01

The Near-Infrared Spectrograph (NIRSpec) is the work-horse spectrograph at 1-5microns for the James Webb Space Telescope (JWST). A showcase observing mode of NIRSpec is the multi-object spectroscopy with the Micro-Shutter Arrays (MSAs), which consist of a quarter million tiny configurable shutters that are 0. ''20×0. ''46 in size. The NIRSpec MSA shutters can be opened in adjacent rows to create flexible and positionable spectroscopy slits on prime science targets of interest. Because of the very small shutter width, the NIRSpec MSA spectral data quality will benefit significantly from accurate astrometric knowledge of the positions of planned science sources. Images acquired with the Hubble Space Telescope (HST) have the optimal relative astrometric accuracy for planning NIRSpec observations of 5-10 milli-arcseconds (mas). However, some science fields of interest might have no HST images, galactic fields can have moderate proper motions at the 5mas level or greater, and extragalactic images with HST may have inadequate source information at NIRSpec wavelengths beyond 2 microns. Thus, optimal NIRSpec spectroscopy planning may require pre-imaging observations with the Near-Infrared Camera (NIRCam) on JWST to accurately establish source positions for alignment with the NIRSpec MSAs. We describe operational philosophies and programmatic considerations for acquiring JWST NIRCam pre-image observations for NIRSpec MSA spectroscopic planning within the same JWST observing Cycle.

Wildfire spread, hazard and exposure metric raster grids for central Catalonia

Directory of Open Access Journals (Sweden)

Fermín J. Alcasena

2018-04-01

Full Text Available We provide 40 m resolution wildfire spread, hazard and exposure metric raster grids for the 0.13 million ha fire-prone Bages County in central Catalonia (northeastern Spain corresponding to node influence grid (NIG, crown fraction burned (CFB and fire transmission to residential houses (TR. Fire spread and behavior data (NIG, CFB and fire perimeters were generated with fire simulation modeling considering wildfire season extreme fire weather conditions (97th percentile. Moreover, CFB was also generated for prescribed fire (Rx mild weather conditions. The TR smoothed grid was obtained with a geospatial analysis considering large fire perimeters and individual residential structures located within the study area. We made these raster grids available to assist in the optimization of wildfire risk management plans within the study area and to help mitigate potential losses from catastrophic events. Keywords: Catalonia, Wildfire exposure, Fire transmission, Crown fire activity, Prescribed fires

Spatially Resolved Two-Color Diffusion Measurements in Human Skin Applied to Transdermal Liposome Penetration

DEFF Research Database (Denmark)

Brewer, Jonathan; Bloksgaard, Maria; Kubiak, Jakub

2013-01-01

A multiphoton excitation-based fluorescence fluctuation spectroscopy method, Raster image correlation spectroscopy (RICS), was used to measure the local diffusion coefficients of distinct model fluorescent substances in excised human skin. In combination with structural information obtained by mu......; doi:10.1038/jid.2012.461....

Medulloblastoma: correlation among findings of conventional magnetic resonance imaging, diffusion-weighted imaging and proton magnetic resonance spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Fonte, Mariana Vieira de Melo da; Otaduy, Maria Concepcion Garcia; Lucato, Leandro Tavares; Reed, Umbertina Conti; Leite, Claudia da Costa [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Hospital das Clinicas. Inst. de Radiologia]. E-mail: mvmfonte@uol.com.br; Costa, Maria Olivia Rodrigues; Amaral, Raquel Portugal Guimaraes [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Faculdade de Medicina. Dept. de Radiologia; Reed, Umbertina Conti [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Faculdade de Medicina. Dept. de Neurologia; Rosemberg, Sergio [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Hospital das Clinicas. Dept. de Patologia

2008-11-15

To correlate imaging findings of medulloblastomas at conventional magnetic resonance imaging, diffusion-weighted imaging and proton magnetic resonance spectroscopy, comparing them with data in the literature. Preoperative magnetic resonance imaging studies of nine pediatric patients with histologically confirmed medulloblastomas (eight desmoplastic medulloblastoma, and one giant cell medulloblastoma) were retrospectively reviewed, considering demographics as well as tumors characteristics such as localization, morphology, signal intensity, contrast-enhancement, dissemination, and diffusion-weighted imaging and spectroscopy findings. In most of cases the tumors were centered in the cerebellar vermis (77.8%), predominantly solid (88.9%), hypointense on T 1-weighted images and intermediate/hyperintense on T 2-FLAIR-weighted images, with heterogeneous enhancement (100%), tumor dissemination/extension (77.8%) and limited water molecule mobility (100%). Proton spectroscopy acquired with STEAM technique (n = 6) demonstrated decreased Na a / Cr ratio (83.3%) and increased Co/Cr (100%) and ml/Cr (66.7%) ratios; and with PRESS technique (n = 7) demonstrated lactate peak (57.1%). Macroscopic magnetic resonance imaging findings in association with biochemical features of medulloblastomas have been useful in the differentiation among the most frequent posterior fossa tumors. (author)

Medulloblastoma: correlation among findings of conventional magnetic resonance imaging, diffusion-weighted imaging and proton magnetic resonance spectroscopy

International Nuclear Information System (INIS)

Fonte, Mariana Vieira de Melo da; Otaduy, Maria Concepcion Garcia; Lucato, Leandro Tavares; Reed, Umbertina Conti; Leite, Claudia da Costa; Costa, Maria Olivia Rodrigues; Amaral, Raquel Portugal Guimaraes; Reed, Umbertina Conti; Rosemberg, Sergio

2008-01-01

To correlate imaging findings of medulloblastomas at conventional magnetic resonance imaging, diffusion-weighted imaging and proton magnetic resonance spectroscopy, comparing them with data in the literature. Preoperative magnetic resonance imaging studies of nine pediatric patients with histologically confirmed medulloblastomas (eight desmoplastic medulloblastoma, and one giant cell medulloblastoma) were retrospectively reviewed, considering demographics as well as tumors characteristics such as localization, morphology, signal intensity, contrast-enhancement, dissemination, and diffusion-weighted imaging and spectroscopy findings. In most of cases the tumors were centered in the cerebellar vermis (77.8%), predominantly solid (88.9%), hypointense on T 1-weighted images and intermediate/hyperintense on T 2-FLAIR-weighted images, with heterogeneous enhancement (100%), tumor dissemination/extension (77.8%) and limited water molecule mobility (100%). Proton spectroscopy acquired with STEAM technique (n = 6) demonstrated decreased Na a / Cr ratio (83.3%) and increased Co/Cr (100%) and ml/Cr (66.7%) ratios; and with PRESS technique (n = 7) demonstrated lactate peak (57.1%). Macroscopic magnetic resonance imaging findings in association with biochemical features of medulloblastomas have been useful in the differentiation among the most frequent posterior fossa tumors. (author)

Waveguide volume probe for magnetic resonance imaging and spectroscopy

DEFF Research Database (Denmark)

2015-01-01

The present disclosure relates to a probe for use within the field of nuclear magnetic resonance, such as magnetic resonance imaging (MRI), and magnetic resonance spectroscopy (MRS)). One embodiment relates to an RF probe for magnetic resonance imaging and/or spectroscopy comprising a conductive...... non-magnetic hollow waveguide having an internal volume and at least one open end, one or more capacitors and at least a first conductive non-magnetic wire, wherein said first conductive wire connects at least one of said one or more capacitors to opposite walls of one open end of the waveguide...

Cancer Metabolism and Tumor Heterogeneity: Imaging Perspectives Using MR Imaging and Spectroscopy

OpenAIRE

Lin, Gigin; Keshari, Kayvan R.; Park, Jae Mo

2017-01-01

Cancer cells reprogram their metabolism to maintain viability via genetic mutations and epigenetic alterations, expressing overall dynamic heterogeneity. The complex relaxation mechanisms of nuclear spins provide unique and convertible tissue contrasts, making magnetic resonance imaging (MRI) and magnetic resonance spectroscopy (MRS) pertinent imaging tools in both clinics and research. In this review, we summarized MR methods that visualize tumor characteristics and its metabolic phenotypes ...

Compact Micro-Imaging Spectrometer (CMIS): Investigation of Imaging Spectroscopy and Its Application to Mars Geology and Astrobiology

Science.gov (United States)

Staten, Paul W.

2005-01-01

Future missions to Mars will attempt to answer questions about Mars' geological and biological history. The goal of the CMIS project is to design, construct, and test a capable, multi-spectral micro-imaging spectrometer use in such missions. A breadboard instrument has been constructed with a micro-imaging camera and Several multi-wavelength LED illumination rings. Test samples have been chosen for their interest to spectroscopists, geologists and astrobiologists. Preliminary analysis has demonstrated the advantages of isotropic illumination and micro-imaging spectroscopy over spot spectroscopy.

Magnetic resonance spectroscopy and imaging in cerebral ischemia

International Nuclear Information System (INIS)

Rijen, P.C. van.

1991-01-01

In-vivo proton and phosphorus magnetic resonance spectroscopy was used to detect changes in cerebral metabolism during ischemia and other types of metabolic stress. Magnetic resonance imaging was performed in an animal model to observe morphological alterations during focal cerebral ischemia. Spectroscopy was performed in animal models with global ischemia, in volunteers during hyperventilation and pharmaco-logically altered cerebral perfusion, and in patients with acute and prolonged focal cerebral ischemia. (author). 396 refs.; 44 figs.; 14 tabs

GAP Land Cover - Image

Data.gov (United States)

Minnesota Department of Natural Resources — This raster dataset is a simple image of the original detailed (1-acre minimum), hierarchically organized vegetation cover map produced by computer classification of...

Surface modification of ceramic and metallic alloy substrates by laser raster-scanning

Science.gov (United States)

Ramos Grez, Jorge Andres

This work describes the feasibility of continuous wave laser-raster scan-processing under controlled atmospheric conditions as employed in three distinct surface modification processes: (a) surface roughness reduction of indirect-Selective Laser Sintered 420 martensitic stainless steel-40 wt. % bronze infiltrated surfaces; (b) Si-Cr-Hf-C coating consolidation over 3D carbon-carbon composites cylinders; (c) dendritic solidification structures of Mar-M 247 confined powder precursor grown from polycrystalline Alloy 718 substrates. A heat transfer model was developed to illustrate that the aspect ratio of the laser scanned pattern and the density of scanning lines play a significant role in determining peak surface temperature, heating and cooling rates and melt resident times. Comprehensive characterization of the surface of the processed specimens was performed using scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), optical metallography, X-ray diffraction (XRD), and, in certain cases, tactile profilometry. In Process (a), it was observed that a 24% to 37% roughness Ra reduction could be accomplished from the as-received value of 2.50+/-0.10 microns for laser energy densities ranging from 350 to 500 J/cm2. In Process (b), complete reactive wetting of carbon-carbon composite cylinders surface was achieved by laser melting a Si-Cr-Hf-C slurry. Coatings showed good thermal stability at 1000°C in argon, and, when tested in air, a percent weight reduction rate of -6.5 wt.%/hr was achieved. A soda-glass overcoat applied over the coated specimens by conventional means revealed a percent weight reduction rate between -1.4 to -2.2 wt.%/hr. Finally, in Process (c), microstructure of the Mar-M 247 single layer deposits, 1 mm in height, grown on Alloy 718 polycrystalline sheets, resulted in a sound metallurgical bond, low porosity, and uniform thickness. Polycrystalline dendrites grew preferentially along the [001] direction from the substrate up to 400

Spatiotemporal image correlation spectroscopy measurements of flow demonstrated in microfluidic channels

Science.gov (United States)

Rossow, Molly; Mantulin, William W.; Gratton, Enrico

2009-03-01

Accurate blood flow measurements during surgery can improve an operation's chance of success. We developed near-infrared spatio-temporal image spectroscopy (NIR-STICS), which has the potential to make blood flow measurements that are difficult to accomplish with existing methods. Specifically, we propose the technique and we show feasibility on phantom measurements. NIR-STICS has the potential of measuring the fluid velocity in small blood vessels (less than 1 mm in diameter) and of creating a map of blood flow rates over an area of approximately 1 cm2. NIR-STICS employs near-infrared spectroscopy to probe inside blood vessel walls and spatiotemporal image correlation spectroscopy to directly-without the use of a model-extract fluid velocity from the fluctuations within an image. We present computer simulations and experiments on a phantom system that demonstrate the effectiveness of NIR-STICS.

In vivo Microscopic Photoacoustic Spectroscopy for Non-Invasive Glucose Monitoring Invulnerable to Skin Secretion Products.

Science.gov (United States)

Sim, Joo Yong; Ahn, Chang-Geun; Jeong, Eun-Ju; Kim, Bong Kyu

2018-01-18

Photoacoustic spectroscopy has been shown to be a promising tool for non-invasive blood glucose monitoring. However, the repeatability of such a method is susceptible to changes in skin condition, which is dependent on hand washing and drying due to the high absorption of infrared excitation light to the skin secretion products or water. In this paper, we present a method to meet the challenges of mid-infrared photoacoustic spectroscopy for non-invasive glucose monitoring. By obtaining the microscopic spatial information of skin during the spectroscopy measurement, the skin region where the infrared spectra is insensitive to skin condition can be locally selected, which enables reliable prediction of the blood glucose level from the photoacoustic spectroscopy signals. Our raster-scan imaging showed that the skin condition for in vivo spectroscopic glucose monitoring had significant inhomogeneities and large variability in the probing area where the signal was acquired. However, the selective localization of the probing led to a reduction in the effects of variability due to the skin secretion product. Looking forward, this technology has broader applications not only in continuous glucose monitoring for diabetic patient care, but in forensic science, the diagnosis of malfunctioning sweat pores, and the discrimination of tumors extracted via biopsy.

Antibody-Unfolding and Metastable-State Binding in Force Spectroscopy and Recognition Imaging

Science.gov (United States)

Kaur, Parminder; Qiang-Fu; Fuhrmann, Alexander; Ros, Robert; Kutner, Linda Obenauer; Schneeweis, Lumelle A.; Navoa, Ryman; Steger, Kirby; Xie, Lei; Yonan, Christopher; Abraham, Ralph; Grace, Michael J.; Lindsay, Stuart

2011-01-01

Force spectroscopy and recognition imaging are important techniques for characterizing and mapping molecular interactions. In both cases, an antibody is pulled away from its target in times that are much less than the normal residence time of the antibody on its target. The distribution of pulling lengths in force spectroscopy shows the development of additional peaks at high loading rates, indicating that part of the antibody frequently unfolds. This propensity to unfold is reversible, indicating that exposure to high loading rates induces a structural transition to a metastable state. Weakened interactions of the antibody in this metastable state could account for reduced specificity in recognition imaging where the loading rates are always high. The much weaker interaction between the partially unfolded antibody and target, while still specific (as shown by control experiments), results in unbinding on millisecond timescales, giving rise to rapid switching noise in the recognition images. At the lower loading rates used in force spectroscopy, we still find discrepancies between the binding kinetics determined by force spectroscopy and those determined by surface plasmon resonance—possibly a consequence of the short tethers used in recognition imaging. Recognition imaging is nonetheless a powerful tool for interpreting complex atomic force microscopy images, so long as specificity is calibrated in situ, and not inferred from equilibrium binding kinetics. PMID:21190677

Multivariate statistical analysis for x-ray photoelectron spectroscopy spectral imaging: Effect of image acquisition time

International Nuclear Information System (INIS)

Peebles, D.E.; Ohlhausen, J.A.; Kotula, P.G.; Hutton, S.; Blomfield, C.

2004-01-01

The acquisition of spectral images for x-ray photoelectron spectroscopy (XPS) is a relatively new approach, although it has been used with other analytical spectroscopy tools for some time. This technique provides full spectral information at every pixel of an image, in order to provide a complete chemical mapping of the imaged surface area. Multivariate statistical analysis techniques applied to the spectral image data allow the determination of chemical component species, and their distribution and concentrations, with minimal data acquisition and processing times. Some of these statistical techniques have proven to be very robust and efficient methods for deriving physically realistic chemical components without input by the user other than the spectral matrix itself. The benefits of multivariate analysis of the spectral image data include significantly improved signal to noise, improved image contrast and intensity uniformity, and improved spatial resolution - which are achieved due to the effective statistical aggregation of the large number of often noisy data points in the image. This work demonstrates the improvements in chemical component determination and contrast, signal-to-noise level, and spatial resolution that can be obtained by the application of multivariate statistical analysis to XPS spectral images

ARCTIS — A MATLAB® Toolbox for Archaeological Imaging Spectroscopy

Directory of Open Access Journals (Sweden)

Clement Atzberger

2014-09-01

Full Text Available Imaging spectroscopy acquires imagery in hundreds or more narrow contiguous spectral bands. This offers unprecedented information for archaeological research. To extract the maximum of useful archaeological information from it, however, a number of problems have to be solved. Major problems relate to data redundancy and the visualization of the large amount of data. This makes data mining approaches necessary, as well as efficient data visualization tools. Additional problems relate to data quality. Indeed, the upwelling electromagnetic radiation is recorded in small spectral bands that are only about ten nanometers wide. The signal received by the sensor is, thus quite low compared to sensor noise and possible atmospheric perturbations. The often small, instantaneous field of view (IFOV—essential for archaeologically relevant imaging spectrometer datasets—further limits the useful signal stemming from the ground. The combination of both effects makes radiometric smoothing techniques mandatory. The present study details the functionality of a MATLAB®-based toolbox, called ARCTIS (ARChaeological Toolbox for Imaging Spectroscopy, for filtering, enhancing, analyzing, and visualizing imaging spectrometer datasets. The toolbox addresses the above-mentioned problems. Its Graphical User Interface (GUI is designed to allow non-experts in remote sensing to extract a wealth of information from imaging spectroscopy for archaeological research. ARCTIS will be released under creative commons license, free of charge, via website (http://luftbildarchiv.univie.ac.at.

Global and Local Page Replacement Algorithms on Virtual Memory Systems for Image Processing

OpenAIRE

WADA, Ben Tsutom

1985-01-01

Three virtual memory systems for image processing, different one another in frame allocation algorithms and page replacement algorithms, were examined experimentally upon their page-fault characteristics. The hypothesis, that global page replacement algorithms are susceptible to thrashing, held in the raster scan experiment, while it did not in another non raster-scan experiment. The results of the experiments may be useful also in making parallel image processors more efficient, while they a...

A Subdivision-Based Representation for Vector Image Editing.

Science.gov (United States)

Liao, Zicheng; Hoppe, Hugues; Forsyth, David; Yu, Yizhou

2012-11-01

Vector graphics has been employed in a wide variety of applications due to its scalability and editability. Editability is a high priority for artists and designers who wish to produce vector-based graphical content with user interaction. In this paper, we introduce a new vector image representation based on piecewise smooth subdivision surfaces, which is a simple, unified and flexible framework that supports a variety of operations, including shape editing, color editing, image stylization, and vector image processing. These operations effectively create novel vector graphics by reusing and altering existing image vectorization results. Because image vectorization yields an abstraction of the original raster image, controlling the level of detail of this abstraction is highly desirable. To this end, we design a feature-oriented vector image pyramid that offers multiple levels of abstraction simultaneously. Our new vector image representation can be rasterized efficiently using GPU-accelerated subdivision. Experiments indicate that our vector image representation achieves high visual quality and better supports editing operations than existing representations.

Pemodelan Spasial Erosi Kualitatif Berbasis Raster Studi Kasus di DAS Serang, Kabupaten Kulonprogo

Directory of Open Access Journals (Sweden)

Nursida Arif

2018-01-01

Citation: Arif, N., Danoedoro, P., dan Hartono. (2017. Pemodelan Spasial Erosi Kualitatif Berbasis Raster Studi Kasus di DAS Serang, Kabupaten Kulonprogo. Jurnal Ilmu Lingkungan, 15(2,127-134, doi:10.14710/jil.15.2.127-134

Laser direct marking applied to rasterizing miniature Data Matrix Code on aluminum alloy

Science.gov (United States)

Li, Xia-Shuang; He, Wei-Ping; Lei, Lei; Wang, Jian; Guo, Gai-Fang; Zhang, Teng-Yun; Yue, Ting

2016-03-01

Precise miniaturization of 2D Data Matrix (DM) Codes on Aluminum alloy formed by raster mode laser direct part marking is demonstrated. The characteristic edge over-burn effects, which render vector mode laser direct part marking inadequate for producing precise and readable miniature codes, are minimized with raster mode laser marking. To obtain the control mechanism for the contrast and print growth of miniature DM code by raster laser marking process, the temperature field model of long pulse laser interaction with material is established. From the experimental results, laser average power and Q frequency have an important effect on the contrast and print growth of miniature DM code, and the threshold of laser average power and Q frequency for an identifiable miniature DM code are respectively 3.6 W and 110 kHz, which matches the model well within normal operating conditions. In addition, the empirical model of correlation occurring between laser marking parameters and module size is also obtained, and the optimal processing parameter values for an identifiable miniature DM code of different but certain data size are given. It is also found that an increase of the repeat scanning number effectively improves the surface finish of bore, the appearance consistency of modules, which has benefit to reading. The reading quality of miniature DM code is greatly improved using ultrasonic cleaning in water by avoiding the interference of color speckles surrounding modules.

Geometrical E-beam proximity correction for raster scan systems

Science.gov (United States)

Belic, Nikola; Eisenmann, Hans; Hartmann, Hans; Waas, Thomas

1999-04-01

High pattern fidelity is a basic requirement for the generation of masks containing sub micro structures and for direct writing. Increasing needs mainly emerging from OPC at mask level and x-ray lithography require a correction of the e-beam proximity effect. The most part of e-beam writers are raster scan system. This paper describes a new method for geometrical pattern correction in order to provide a correction solution for e-beam system that are not able to apply variable doses.

Integrated Storage and Management of Vector and Raster Data Based on Oracle Database

Directory of Open Access Journals (Sweden)

WU Zheng

2017-05-01

Full Text Available At present, there are many problems in the storage and management of multi-source heterogeneous spatial data, such as the difficulty of transferring, the lack of unified storage and the low efficiency. By combining relational database and spatial data engine technology, an approach for integrated storage and management of vector and raster data is proposed on the basis of Oracle in this paper. This approach establishes an integrated storage model on vector and raster data and optimizes the retrieval mechanism at first, then designs a framework for the seamless data transfer, finally realizes the unified storage and efficient management of multi-source heterogeneous data. By comparing experimental results with the international leading similar software ArcSDE, it is proved that the proposed approach has higher data transfer performance and better query retrieval efficiency.

Evaluating the Open Source Data Containers for Handling Big Geospatial Raster Data

Directory of Open Access Journals (Sweden)

Fei Hu

2018-04-01

Full Text Available Big geospatial raster data pose a grand challenge to data management technologies for effective big data query and processing. To address these challenges, various big data container solutions have been developed or enhanced to facilitate data storage, retrieval, and analysis. Data containers were also developed or enhanced to handle geospatial data. For example, Rasdaman was developed to handle raster data and GeoSpark/SpatialHadoop were enhanced from Spark/Hadoop to handle vector data. However, there are few studies to systematically compare and evaluate the features and performances of these popular data containers. This paper provides a comprehensive evaluation of six popular data containers (i.e., Rasdaman, SciDB, Spark, ClimateSpark, Hive, and MongoDB for handling multi-dimensional, array-based geospatial raster datasets. Their architectures, technologies, capabilities, and performance are compared and evaluated from two perspectives: (a system design and architecture (distributed architecture, logical data model, physical data model, and data operations; and (b practical use experience and performance (data preprocessing, data uploading, query speed, and resource consumption. Four major conclusions are offered: (1 no data containers, except ClimateSpark, have good support for the HDF data format used in this paper, requiring time- and resource-consuming data preprocessing to load data; (2 SciDB, Rasdaman, and MongoDB handle small/mediate volumes of data query well, whereas Spark and ClimateSpark can handle large volumes of data with stable resource consumption; (3 SciDB and Rasdaman provide mature array-based data operation and analytical functions, while the others lack these functions for users; and (4 SciDB, Spark, and Hive have better support of user defined functions (UDFs to extend the system capability.

Clinical magnetic resonance: imaging and spectroscopy

International Nuclear Information System (INIS)

Andrew, E.R.; Bydder, Graeme; Griffiths, John; Iles, Richard; Styles, Peter

1990-01-01

This book begins with a readable, comprehensive but non-mathematical introduction to the basic underlying principles of magnetic resonance. Further chapters include information on the theory and principles of MRI and MRS, the interpretation of MR images, the clinical applications and scope of MRI and MRS, practical aspects of spectroscopy and magnetic resonance, and also the practical problems associated with the siting, safety and operation of large MRI and MRS equipment. (author)

Field Imaging Spectroscopy. Applications in Earthquake Geology

Science.gov (United States)

Ragona, D.; Minster, B.; Rockwell, T. K.; Fialko, Y.; Jussila, J.; Blom, R.

2005-12-01

Field Imaging Spectroscopy in the visible and infrared sections of the spectrum can be used as a technique to assist paleoseismological studies. Submeter range hyperspectral images of paleoseismic excavations can assist the analyisis and interpretation of the earthquake history of a site. They also provide an excellent platform for storage of the stratigraphic and structural information collected from such a site. At the present, most field data are collected descriptively. This greatly enhances the range of information that can be recorded in the field. The descriptions are documented on hand drawn field logs and/or photomosaics constructed from individual photographs. Recently developed portable hyperspectral sensors acquire high-quality spectroscopic information at high spatial resolution (pixel size ~ 0.5 mm at 50 cm) over frequencies ranging from the visible band to short wave infrared. The new data collection and interpretation methodology that we are developing (Field Imaging Spectroscopy) makes available, for the first time, a tool to quantitatively analyze paleoseismic and stratigraphic information. The reflectance spectra of each sub-millimeter portion of the material are stored in a 3-D matrix (hyperspectral cube) that can be analyzed by visual inspection, or by using a large variety of algorithms. The reflectance spectrum is related to the chemical composition and physical properties of the surface therefore hyperspectral images are capable of revealing subtle changes in texture, composition and weathering. For paleoseismic studies, we are primarily interested in distinguishing changes between layers at a given site (spectral stratigraphy) rather than the precise composition of the layers, although this is an added benefit. We have experimented with push-broom (panoramic) portable scanners, and acquired data form portions of fault exposures and cores. These images were processed using well-known imaging processing algorithms, and the results have being

Analysis of engineering drawings and raster map images

CERN Document Server

Henderson, Thomas C

2013-01-01

Presents up-to-date methods and algorithms for the automated analysis of engineering drawings and digital cartographic maps Discusses automatic engineering drawing and map analysis techniques Covers detailed accounts of the use of unsupervised segmentation algorithms to map images

Clinical perspectives of hybrid proton-fluorine magnetic resonance imaging and spectroscopy.

Science.gov (United States)

Wolters, Martijn; Mohades, Seyede G; Hackeng, Tilman M; Post, Mark J; Kooi, Marianne E; Backes, Walter H

2013-05-01

The number of applications of fluorine 19 (19F) magnetic resonance (MR) imaging and spectroscopy in biomedical and clinical research is steadily growing. The 100% natural abundance of fluorine and its relatively high sensitivity for MR (83% to that of protons) make it an interesting nucleus for a wide range of MR applications. Fluorinated contrast media have a number of advantages over the conventionally used gadolinium-based or iron-based contrast agents. The absence of an endogenous fluorine background intensity in the human body facilitates reliable quantification of fluorinated contrast medium or drugs. Anatomy can be visualized separately with proton MR imaging, creating the application of hybrid hydrogen 1 (1H)/19F MR imaging. The availability of 2 channels (ie, the 1H and 19F channels) enables dual-targeted molecular imaging. Recently, novel developments have emerged on fluorine-based contrast media in preclinical studies and imaging techniques. The developments in fluorine MR seem promising for clinical applications, with contributions in therapy monitoring, assessment of lung function, angiography, and molecular imaging. This review outlines the translation from recent advances in preclinical MR imaging and spectroscopy to future perspectives of clinical hybrid 1H/19/F MR imaging applications.

Capabilities and diagnostics of the Sandia Pelletron-raster system

International Nuclear Information System (INIS)

Buckalew, W.H.; Lockwood, G.J.; Luker, S.M.; Ruggles, L.E.; Wyant, F.J.

1984-07-01

The radiation capabilities of the PELLETRON Electron Beam Accelerator have been expanded to include a controllable, variable dimension, beam diffusion option. This rastered beam option has been studied in detail. Beam characteristics have been determined as a function of incident electron beam energy, current, and deflection system parameters. The beam diagnostics required to define any given diffuse beam pattern are accurate and predictable. Recently, utility of this added PELLETRON capability was demonstrated by simulating the effects of complex nuclear reactor accident electron environments on electrical insulation materials similar to those used in nuclear power plants

Spatio-Temporal Image Correlation Spectroscopy Measurements of Flow Demonstrated in Microfluidic Channels

Science.gov (United States)

Rossow, Molly; Mantulin, William W.; Gratton, Enrico

2009-01-01

Accurate blood flow measurements during surgery can improve the operations chance of success. We developed Near-infrared Spatio-Temporal Image Spectroscopy (NIR-STICS), which has the potential to make blood flow measurements that are difficult to accomplish with existing methods. Specifically, we propose the technique and we show feasibility on phantom measurements. NIR-STICS has the potential of measuring the fluid velocity in small blood vessels (less than 1mm in diameter) and of creating a map of blood flow rates over an area of approximately 1cm2. NIR-STICS employs near-infrared spectroscopy to probe inside blood vessel walls and spatio-temporal image correlation spectroscopy to directly—without the use of a model—extract fluid velocity from the fluctuations within an image. Here we present computer simulations and experiments on a phantom system that demonstrate the effectiveness of NIR-STICS. PMID:19405744

Total Internal Reflection Fluorescence Microscopy Imaging-Guided Confocal Single-Molecule Fluorescence Spectroscopy

OpenAIRE

Zheng, Desheng; Kaldaras, Leonora; Lu, H. Peter

2013-01-01

We have developed an integrated spectroscopy system combining total internal reflection fluorescence microscopy imaging with confocal single-molecule fluorescence spectroscopy for two-dimensional interfaces. This spectroscopy approach is capable of both multiple molecules simultaneously sampling and in situ confocal fluorescence dynamics analyses of individual molecules of interest. We have demonstrated the calibration with fluorescent microspheres, and carried out single-molecule spectroscop...

Spatiotemporal visualization of subcellular dynamics of carbon nanotubes

KAUST Repository

Serag, Maged F.; Braeckmans, Kevin; Habuchi, Satoshi; Kaji, Noritada; Bianco, Alberto; Baba, Yoshinobu

2012-01-01

throughout the plant cell. By using raster scan image correlation spectroscopy (RICS), we were able to generate highly quantitative spatial maps of CNTs diffusion in different cell compartments. The spatial map of diffusion values revealed that the uptake

Role of Infrared Spectroscopy and Imaging in Cancer Diagnosis.

Science.gov (United States)

Kumar, Saroj; Srinivasan, Alagiri; Nikolajeff, Fredrik

2018-01-01

Cancer is a major global health issue. It causes extensive individual suffering and gives a huge burden on the health care in society. Despite extensive research and different tools have been developed it still remains a challenge for early detection of this disease. FTIR imaging has been used to diagnose and differentiate the molecular differences between normal and diseased tissues. Fourier Transform Infrared Spectroscopy (FTIR) is able to measure biochemical changes in tissue, cell and biofluids based on the vibrational signature of their components. This technique enables to the distribution and structure of lipids, proteins, nucleic acids as well as other metabolites. These differences depended on the type and the grade of cancer. We emphasize here, that the FTIR spectroscopy and imaging can be considered as a promising technique and will find its place on the detection of this dreadful disease because of high sensitivity, accuracy and inexpensive technique. Now the medical community started using and accepting this technique for early stage cancer detection. We discussed this technique and the several challenges in its application for the diagnosis of cancer in regards of sample preparations, data interpretation, and data analysis. The sensitivity of chemotherapy drugs on individual specific has also discussed. So far progressed has done with the FTIR imaging in understanding of cancer disease pathology. However, more research is needed in this field and it is necessary to understand the morphology and biology of the sample before using the spectroscopy and imaging because invaluable information to be figured out. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Design Through Integration of On-Board Calibration Device with Imaging Spectroscopy Instruments

Science.gov (United States)

Stange, Michael

2012-01-01

The main purpose of the Airborne Visible and Infrared Imaging Spectroscopy (AVIRIS) project is to "identify, measure, and monitor constituents of the Earth's surface and atmosphere based on molecular absorption and particle scattering signatures." The project designs, builds, and tests various imaging spectroscopy instruments that use On-Board Calibration devices (OBC) to check the accuracy of the data collected by the spectrometers. The imaging instrument records the spectral signatures of light collected during flight. To verify the data is correct, the OBC shines light which is collected by the imaging spectrometer and compared against previous calibration data to track spectral response changes in the instrument. The spectral data has the calibration applied to it based on the readings from the OBC data in order to ensure accuracy.

Magnetic resonance spectroscopy as an imaging method

International Nuclear Information System (INIS)

Bomsdorf, H.; Imme, M.; Jensen, D.; Kunz, D.; Menhardt, W.; Ottenberg, K.; Roeschmann, P.; Schmidt, K.H.; Tschendel, O.; Wieland, J.

1990-01-01

An experimental Magnetic Resonance (MR) system with 4 tesla flux density was set up. For that purpose a data acquisition system and RF coils for resonance frequencies up to 170 MHz were developed. Methods for image guided spectroscopy as well as spectroscopic imaging focussing on the nuclei 1 H and 13 C were developed and tested on volunteers and selected patients. The advantages of the high field strength with respect to spectroscopic studies were demonstrated. Developments of a new fast imaging technique for the acquisition of scout images as well as a method for mapping and displaying the magnetic field inhomogeneity in-vivo represent contributions to the optimisation of the experimental procedure in spectroscopic studies. Investigations on the interaction of RF radiation with the exposed tissue allowed conclusions regarding the applicability of MR methods at high field strengths. Methods for display and processing of multi-dimensional spectroscopic imaging data sets were developed and existing methods for real-time image synthesis were extended. Results achieved in the field of computer aided analysis of MR images comprised new techniques for image background detection, contour detection and automatic image interpretation as well as knowledge bases for textural representation of medical knowledge for diagnosis. (orig.) With 82 refs., 3 tabs., 75 figs [de

Resonant Optical Gradient Force Interaction for Nano-Imaging and-Spectroscopy

Science.gov (United States)

2016-07-19

New J. Phys. 18 (2016) 053042 doi:10.1088/1367-2630/18/5/053042 PAPER Resonant optical gradient force interaction for nano-imaging and -spectroscopy...HonghuaUYang andMarkus BRaschke Department of Physics , Department of Chemistry, and JILA,University of Colorado, Boulder, CO80309,USA E-mail...honghua.yang@colorado.edu andmarkus.raschke@colorado.edu Keywords:nano spectroscopy, optical force, near-field optics Abstract The optical gradient force

[Dementias: diagnostic contribution of imaging and proton magnetic resonance spectroscopy].

Science.gov (United States)

Arana, E; Martínez-Granados, B; Marti-Bonmati, L; Martínez-Bisbal, M C; Gil, A; Blasco, C; Celda, B

2007-06-01

The objective is analyze the complementarity between 1H magnetic resonance spectroscopy (MRS) and magnetic resonance (MR) imaging in the global diagnosis of Alzheimer's disease (AD) or vascular dementia (VD). We studied 168 patients with cognitive impairment from AD, VD, mild cognitive impairment (MCI) and major depression. All patients were evaluated by brain MR imaging and MRS using two sample volumes localized at right medial temporal gyrus and posterior parietal gyrus. Metabolites analyzed were N-acetylaspartate (NAA), myo-Inositol (mI), Choline (Cho) and creatine (Cr), as standard references for obtaining the Co/Cr, mI/Cr and NAA/Cr ratios. Imaging and spectroscopy alterations were graded from 0 to 4 and the average of both was used to draw ROC and SROC curves. Area under ROC curve (Az) was used as a measure of discriminative ability. Combination of MR imaging and MRS significantly improved AD diagnosis (Global Az: 0.722 vs. MR imaging Az: 0.624; p: 0.003). However, the combination of MR imaging and MRS did not improve VD diagnosis. SROC curve obtained for the diagnosis of global dementia was Az: 0.6658 with 0.67 sensitivity and 0.65 specificity. Combination of both MR techniques significantly improved AD diagnosis versus MR imaging alone. More studies are needed to enhance VD classification. Metabolic data found by MRS can be useful to differentiate cognitive impairment

Near-infrared imaging spectroscopy for counterfeit drug detection

Science.gov (United States)

Arnold, Thomas; De Biasio, Martin; Leitner, Raimund

2011-06-01

Pharmaceutical counterfeiting is a significant issue in the healthcare community as well as for the pharmaceutical industry worldwide. The use of counterfeit medicines can result in treatment failure or even death. A rapid screening technique such as near infrared (NIR) spectroscopy could aid in the search for and identification of counterfeit drugs. This work presents a comparison of two laboratory NIR imaging systems and the chemometric analysis of the acquired spectroscopic image data. The first imaging system utilizes a NIR liquid crystal tuneable filter and is designed for the investigation of stationary objects. The second imaging system utilizes a NIR imaging spectrograph and is designed for the fast analysis of moving objects on a conveyor belt. Several drugs in form of tablets and capsules were analyzed. Spectral unmixing techniques were applied to the mixed reflectance spectra to identify constituent parts of the investigated drugs. The results show that NIR spectroscopic imaging can be used for contact-less detection and identification of a variety of counterfeit drugs.

The wildland-urban interface raster dataset of Catalonia.

Science.gov (United States)

Alcasena, Fermín J; Evers, Cody R; Vega-Garcia, Cristina

2018-04-01

We provide the wildland urban interface (WUI) map of the autonomous community of Catalonia (Northeastern Spain). The map encompasses an area of some 3.21 million ha and is presented as a 150-m resolution raster dataset. Individual housing location, structure density and vegetation cover data were used to spatially assess in detail the interface, intermix and dispersed rural WUI communities with a geographical information system. Most WUI areas concentrate in the coastal belt where suburban sprawl has occurred nearby or within unmanaged forests. This geospatial information data provides an approximation of residential housing potential for loss given a wildfire, and represents a valuable contribution to assist landscape and urban planning in the region.

DISPLAY OF PIXEL LOSS AND REPLICATION IN REPROJECTING RASTER DATA FROM THE SINUSOIDAL PROJECTION

Science.gov (United States)

Recent studies show the sinusoidal projection to be a superior planar projection for representing global raster datasets. This study uses the sinusoidal projection as a basis for evaluating pixel loss and replication in eight other planar map projections. The percent of pixels ...

MR imaging, proton MR spectroscopy, ultrasonographic, histologic findings in patients with chronic lymphedema.

Science.gov (United States)

Fumiere, E; Leduc, O; Fourcade, S; Becker, C; Garbar, C; Demeure, R; Wilputte, F; Leduc, A; Delcour, C

2007-12-01

Lymphedema is a progressive disease with multiple alterations occurring in the dermis. We undertook this study using high-frequency ultrasonography (US), magnetic resonance imaging, proton MR spectroscopy and histology to examine structural changes occurring in the subcutaneous tissue and precisely describe the nature of intralobular changes in chronic lymphedema. Four cutaneous and subcutaneous tissue biopsies from patients with chronic lymphedema during lymphonodal transplantation were studied. We performed US with a 13.5 MHz transducer, TSE T1 and TSE T2 magnetic resonance images with and without fat-suppression, MR Chemical Shift Imaging Spectroscopy and histological evaluation on these biopsies. We found that normal subcutaneous septa are seen as hyperechogenic lines in US and hyposignal lines in MRI and that hyperechogenic subcutis in US can be due to interlobular and intralobular water accumulation and/or to interlobular and intralobular fibrosis. Our study also confirms the usefulness of MR spectroscopy to assess water or fat content of soft tissue. Thus, multiple imaging modalities may be necessary to precisely delineate the nature of tissue alterations in chronic lymphedema.

Atomic Force Microscope for Imaging and Spectroscopy

Science.gov (United States)

Pike, W. T.; Hecht, M. H.; Anderson, M. S.; Akiyama, T.; Gautsch, S.; deRooij, N. F.; Staufer, U.; Niedermann, Ph.; Howald, L.; Mueller, D.

2000-01-01

We have developed, built, and tested an atomic force microscope (AFM) for extraterrestrial applications incorporating a micromachined tip array to allow for probe replacement. It is part of a microscopy station originally intended for NASA's 2001 Mars lander to identify the size, distribution, and shape of Martian dust and soil particles. As well as imaging topographically down to nanometer resolution, this instrument can be used to reveal chemical information and perform infrared and Raman spectroscopy at unprecedented resolution.

Raster microdiffraction with synchrotron radiation of hydrated biopolymers with nanometre step-resolution: case study of starch granules

International Nuclear Information System (INIS)

Riekel, C.; Burghammer, M.; Davies, R. J.; Di Cola, E.; König, C.; Lemke, H.T.; Putaux, J.-L.; Schöder, S.

2010-01-01

Radiation damage propagation was examined in starch granules by synchrotron radiation micro- and nano-diffraction techniques from cryo- to room temperatures. Careful dose limitation allowed raster-diffraction experiments with 500 nm step resolution to be performed. X-ray radiation damage propagation is explored for hydrated starch granules in order to reduce the step resolution in raster-microdiffraction experiments to the nanometre range. Radiation damage was induced by synchrotron radiation microbeams of 5, 1 and 0.3 µm size with ∼0.1 nm wavelength in B-type potato, Canna edulis and Phajus grandifolius starch granules. A total loss of crystallinity of granules immersed in water was found at a dose of ∼1.3 photons nm −3 . The temperature dependence of radiation damage suggests that primary radiation damage prevails up to about 120 K while secondary radiation damage becomes effective at higher temperatures. Primary radiation damage remains confined to the beam track at 100 K. Propagation of radiation damage beyond the beam track at room temperature is assumed to be due to reactive species generated principally by water radiolysis induced by photoelectrons. By careful dose selection during data collection, raster scans with 500 nm step-resolution could be performed for granules immersed in water

A Quantitative Diffuse Reflectance Imaging (QDRI) System for Comprehensive Surveillance of the Morphological Landscape in Breast Tumor Margins.

Science.gov (United States)

Nichols, Brandon S; Schindler, Christine E; Brown, Jonathon Q; Wilke, Lee G; Mulvey, Christine S; Krieger, Marlee S; Gallagher, Jennifer; Geradts, Joseph; Greenup, Rachel A; Von Windheim, Jesko A; Ramanujam, Nirmala

2015-01-01

In an ongoing effort to address the clear clinical unmet needs surrounding breast conserving surgery (BCS), our group has developed a next-generation multiplexed optical-fiber-based tool to assess breast tumor margin status during initial surgeries. Specifically detailed in this work is the performance and clinical validation of a research-grade intra-operative tool for margin assessment based on diffuse optical spectroscopy. Previous work published by our group has illustrated the proof-of-concept generations of this device; here we incorporate a highly optimized quantitative diffuse reflectance imaging (QDRI) system utilizing a wide-field (imaging area = 17 cm(2)) 49-channel multiplexed fiber optic probe, a custom raster-scanning imaging platform, a custom dual-channel white LED source, and an astronomy grade imaging CCD and spectrograph. The system signal to noise ratio (SNR) was found to be greater than 40 dB for all channels. Optical property estimation error was found to be less than 10%, on average, over a wide range of absorption (μa = 0-8.9 cm(-1)) and scattering (μs' = 7.0-9.7 cm(-1)) coefficients. Very low inter-channel and CCD crosstalk was observed (2% max) when used on turbid media (including breast tissue). A raster-scanning mechanism was developed to achieve sub-pixel resolution and was found to be optimally performed at an upsample factor of 8, affording 0.75 mm spatially resolved diffuse reflectance images (λ = 450-600 nm) of an entire margin (area = 17 cm(2)) in 13.8 minutes (1.23 cm(2)/min). Moreover, controlled pressure application at the probe-tissue interface afforded by the imaging platform reduces repeated scan variability, providing operative time scales with improved sensitivity to regions of focal disease that may otherwise be overlooked.

Application of raster-based GIS techniques in the siting of landfills in Trabzon Province, Turkey: a case study.

Science.gov (United States)

Yildirim, Volkan

2012-09-01

One of the most important steps in solid waste management is the selection of an appropriate landfill site. The site selection process requires the evaluation and analysis of several criteria. However, the traditional evaluation method is not sufficient for the site selection process. Geographical information system (GIS) technologies are effectively used in the process of site selection, which is a spatial problem. This article describes a raster GIS-based landfill site selection (LSS) method. This method utilizes a raster-based spatial database in which the factors affect the landfill site selection. The final product in this method is the cost surface map showing pixel-based values of the appropriate areas. Furthermore, this GIS-based LSS method was applied for the evaluation of two landfill sites in Trabzon Province in Turkey, for which the traditional evaluation method for site selection was used. The suitability values on the cost surface map of these two landfills have shown that these sites are not appropriate for a solid waste landfill. In conclusion, it was demonstrated that the method of raster GIS-based site selection gives more effective results than traditional methods.

Gulf of Maine - Control Points Used to Validate the Accuracies of the Interpolated Water Density Rasters

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This feature dataset contains the control points used to validate the accuracies of the interpolated water density rasters for the Gulf of Maine. These control...

Magnetic resonance imaging and spectroscopy- emerging trends in medical diagnostics and therapy

International Nuclear Information System (INIS)

Deshmukh, Sudha

1997-01-01

A dramatic acceleration in the application of magnetic resonance techniques in the field of medical sciences has been witnessed over the past decade. Magnetic Resonance Imaging (MRI) has been called the most significant development since the discovery of x-rays. As a method of visualizing cross-sectional anatomy, MRI is without peer. MRI images can now provide in-vivo anatomical details that were earlier available only with invasive procedures. Yet, despite its extraordinary potential, MRI has had limited success, if any, in tissue characterization using the three image parameters T 1 , T 2 and proton density ρ. MR spectroscopy has however bridged this gap to a large extent and opened up the possibility of studying in vivo chemistry. In the present article an attempt has been made to give a brief account of the application of magnetic resonance imaging and spectroscopy in medical diagnostics and therapy. The basic principles pertaining to MRI and MRS are also discussed in brief. (author)

The wildland-urban interface raster dataset of Catalonia

Directory of Open Access Journals (Sweden)

Fermín J. Alcasena

2018-04-01

Full Text Available We provide the wildland urban interface (WUI map of the autonomous community of Catalonia (Northeastern Spain. The map encompasses an area of some 3.21 million ha and is presented as a 150-m resolution raster dataset. Individual housing location, structure density and vegetation cover data were used to spatially assess in detail the interface, intermix and dispersed rural WUI communities with a geographical information system. Most WUI areas concentrate in the coastal belt where suburban sprawl has occurred nearby or within unmanaged forests. This geospatial information data provides an approximation of residential housing potential for loss given a wildfire, and represents a valuable contribution to assist landscape and urban planning in the region. Keywords: Wildland-urban interface, Wildfire risk, Urban planning, Human communities, Catalonia

Hydrothermal Processes in the Archean - New Insights from Imaging Spectroscopy

NARCIS (Netherlands)

Ruitenbeek, F.J.A. van

2007-01-01

The aim of this research was to gain new insights in fossil hydrothermal systems using airborne imaging spectroscopy. Fossil submarine hydrothermal systems in Archean greenstone belts and other geologic terranes are important because of their relationship with volcanic massive sulfide (VMS) mineral

Report on International Spaceborne Imaging Spectroscopy Technical Committee Calibration and Validation Workshop, National Environment Research Council Field Spectroscopy Facility, University of Edinburgh

Science.gov (United States)

Ong, C,; Mueller, A.; Thome, K.; Bachmann, M.; Czapla-Myers, J.; Holzwarth, S.; Khalsa, S. J.; Maclellan, C.; Malthus, T.; Nightingale, J.;

Imaging hydrogen oxidation activity of catalyst-coated perfluoro ...

Indian Academy of Sciences (India)

Administrator

microelectrode (UME) voltammetry in terms of reduced ohmic drop and ... ing contribution with the advantages of imaging by rastering the UME across an ... this work, we demonstrate these distinctive features of SECM in evaluating reactivity ...

Cancer Metabolism and Tumor Heterogeneity: Imaging Perspectives Using MR Imaging and Spectroscopy

Directory of Open Access Journals (Sweden)

Gigin Lin

2017-01-01

Full Text Available Cancer cells reprogram their metabolism to maintain viability via genetic mutations and epigenetic alterations, expressing overall dynamic heterogeneity. The complex relaxation mechanisms of nuclear spins provide unique and convertible tissue contrasts, making magnetic resonance imaging (MRI and magnetic resonance spectroscopy (MRS pertinent imaging tools in both clinics and research. In this review, we summarized MR methods that visualize tumor characteristics and its metabolic phenotypes on an anatomical, microvascular, microstructural, microenvironmental, and metabolomics scale. The review will progress from the utilities of basic spin-relaxation contrasts in cancer imaging to more advanced imaging methods that measure tumor-distinctive parameters such as perfusion, water diffusion, magnetic susceptibility, oxygenation, acidosis, redox state, and cell death. Analytical methods to assess tumor heterogeneity are also reviewed in brief. Although the clinical utility of tumor heterogeneity from imaging is debatable, the quantification of tumor heterogeneity using functional and metabolic MR images with development of robust analytical methods and improved MR methods may offer more critical roles of tumor heterogeneity data in clinics. MRI/MRS can also provide insightful information on pharmacometabolomics, biomarker discovery, disease diagnosis and prognosis, and treatment response. With these future directions in mind, we anticipate the widespread utilization of these MR-based techniques in studying in vivo cancer biology to better address significant clinical needs.

Digital Geological Model (DGM): a 3D raster model of the subsurface of the Netherlands

NARCIS (Netherlands)

Gunnink, J.L.; Maljers, D.; Gessel, S.F. van; Menkovic, A.; Hummelman, H.J.

2013-01-01

A 3D geological raster model has been constructed of the onshore of the Netherlands. The model displays geological units for the upper 500 m in 3D in an internally consistent way. The units are based on the lithostratigraphical classification of the Netherlands. This classification is used to

In-vivo optical detection of cancer using chlorin e6 – polyvinylpyrrolidone induced fluorescence imaging and spectroscopy

International Nuclear Information System (INIS)

Chin, William WL; Thong, Patricia SP; Bhuvaneswari, Ramaswamy; Soo, Khee Chee; Heng, Paul WS; Olivo, Malini

2009-01-01

Photosensitizer based fluorescence imaging and spectroscopy is fast becoming a promising approach for cancer detection. The purpose of this study was to examine the use of the photosensitizer chlorin e6 (Ce6) formulated in polyvinylpyrrolidone (PVP) as a potential exogenous fluorophore for fluorescence imaging and spectroscopic detection of human cancer tissue xenografted in preclinical models as well as in a patient. Fluorescence imaging was performed on MGH human bladder tumor xenografted on both the chick chorioallantoic membrane (CAM) and the murine model using a fluorescence endoscopy imaging system. In addition, fiber optic based fluorescence spectroscopy was performed on tumors and various normal organs in the same mice to validate the macroscopic images. In one patient, fluorescence imaging was performed on angiosarcoma lesions and normal skin in conjunction with fluorescence spectroscopy to validate Ce6-PVP induced fluorescence visual assessment of the lesions. Margins of tumor xenografts in the CAM model were clearly outlined under fluorescence imaging. Ce6-PVP-induced fluorescence imaging yielded a specificity of 83% on the CAM model. In mice, fluorescence intensity of Ce6-PVP was higher in bladder tumor compared to adjacent muscle and normal bladder. Clinical results confirmed that fluorescence imaging clearly captured the fluorescence of Ce6-PVP in angiosarcoma lesions and good correlation was found between fluorescence imaging and spectral measurement in the patient. Combination of Ce6-PVP induced fluorescence imaging and spectroscopy could allow for optical detection and discrimination between cancer and the surrounding normal tissues. Ce6-PVP seems to be a promising fluorophore for fluorescence diagnosis of cancer

NMR clinical imaging and spectroscopy: Its impact on nuclear medicine

International Nuclear Information System (INIS)

1990-01-01

This is a collection of four papers describing aspects of past and future use of nuclear magnetic resonance as a clinical diagnostic tool. The four papers are entitled (1) What Does NMR Offer that Nuclear Medicine Does Not? by Jerry W. Froelich, (2) Oncological Imaging: Now, Future and Impact Jerry W. Froelich, (3) Magnetic Resonance Spectroscopy/Spectroscopic Imaging and Nuclear Medicine: Past, Present and Future by H. Cecil Charles, and (4) MR Cardiology: Now, Future and Impact by Robert J. Herfkens

Terahertz time-domain spectroscopy and imaging of artificial RNA

DEFF Research Database (Denmark)

Fischer, Bernd M.; Hoffmann, Matthias; Helm, Hanspeter

2005-01-01

We use terahertz time-domain spectroscopy (THz-TDS) to measure the far-infrared dielectric function of two artificial RNA single strands, composed of polyadenylic acid (poly-A) and polycytidylic acid (poly-C). We find a significant difference in the absorption between the two types of RNA strands......, and we show that we can use this difference to record images of spot arrays of the RNA strands. Under controlled conditions it is possible to use the THz image to distinguish between the two RNA strands. We discuss the requirements to sample preparation imposed by the lack of sharp spectral features...

A Method for Qualitative Mapping of Thick Oil Spills Using Imaging Spectroscopy

Science.gov (United States)

Clark, Roger N.; Swayze, Gregg A.; Leifer, Ira; Livo, K. Eric; Lundeen, Sarah; Eastwood, Michael; Green, Robert O.; Kokaly, Raymond F.; Hoefen, Todd; Sarture, Charles; McCubbin, Ian; Roberts, Dar; Steele, Denis; Ryan, Thomas; Dominguez, Roseanne; Pearson, Neil; ,

2010-01-01

A method is described to create qualitative images of thick oil in oil spills on water using near-infrared imaging spectroscopy data. The method uses simple 'three-point-band depths' computed for each pixel in an imaging spectrometer image cube using the organic absorption features due to chemical bonds in aliphatic hydrocarbons at 1.2, 1.7, and 2.3 microns. The method is not quantitative because sub-pixel mixing and layering effects are not considered, which are necessary to make a quantitative volume estimate of oil.

Estimated Depth to Bedrock of Iowa as a 110 meter pixel_32bit Imagine Format Raster Dataset

Data.gov (United States)

Iowa State University GIS Support and Research Facility — This raster dataset represents the depth to bedrock from the land surface. It was derived by subtracting a bedrock surface elevation layer from the NED 30 meter...

AVALIAÇÃO DOS INTERPOLADORES KRIGAGEM E TOPO TO RASTER PARA GERAÇÃO DE MODELOS DIGITAIS DE ELEVAÇÃO A PARTIR DE UM "AS BUILT"

Directory of Open Access Journals (Sweden)

Edilson José do Carmo

Full Text Available O presente trabalho objetiva realizar o "as built" de uma caixa de decantação de estação de tratamento de água e avaliar o uso dos métodos de interpolação krigagem e Topo to Raster na geração de Modelo Digital de Elevação (MDE do fundo de uma caixa de decantação de uma Estação de Tratamento de Água levantado com estação total. Para interpolação com o Topo to Raster foram usadas duas metodologias, uma usando como arquivo de entrada linhas de contorno e pontos cotados, conhecido como Topo to Raster padrão, e outra usando somente pontos cotados, conhecido como Topo to Raster condicionado. A interpolação por krigagem foi feita utilizando krigagem ordinária e krigagem simples. Foi utilizado como referência 50 pontos extraídos do MDE gerado pelo método Triangular Irregular Network (TIN. Para cada amostra de discrepância foram calculados indicadores estatísticos. O Modelo gerado por Topo to Raster condicionado apresentou visíveis distorções nas bordas e no centro da área de estudo, devendo ser descartado. Aplicando o teste z, conclui-se que as médias das discrepâncias dos interpoladores krigagem ordinária e krigagem simples não são significativas à um nível de confiança de 95%, ou seja, não diferem do TIN. Já os interpoladores Topo to Raster padrão e Topo to Raster condicionado apresentam diferenças significativas nas médias. Para profundidades médias de 3,21 m, foram encontrados os seguintes valores para os indicadores estatísticos: discrepância média de 1 cm, discrepância máxima de 10 cm, desvio padrão da amostra de 3 cm e RMS das discrepâncias de 3 cm.

Serial MR imaging and 1H-MR spectroscopy in monozygotic twins with Tay-Sachs disease.

Science.gov (United States)

Imamura, A; Miyajima, H; Ito, R; Orii, K O

2008-10-01

Four-year-old monozygotic female twins with early onset Tay-Sachs disease are described. The sisters showed similar slowly progressive clinical symptoms and deterioration, however the younger sister also demonstrated intractable myoclonus in the right leg. The serial MR images and (1)H-MR spectroscopy of the brain were obtained in both twins. MR images showed high intensity on T (2)-weighted image in the bilateral white matter, however there were no signal changes in the basal ganglia and thalamus during any of the phases. The ratio of N-acetylaspartate (NAA)/creatine (Cr) was decreased in the both white matter lesions and the corpus striatum, and that of myoinositol (mI)/Cr was increased in the damaged white matter on MR spectroscopy. The elevation of the lactate peak was clearly demonstrated in the left basal ganglia of the younger sister; however it was not shown in cerebral lesions of the elder sister. Changes in metabolites on MR spectroscopy were closely linked to the respective clinical features of each twin. Follow-up examination by (1)H-MR spectroscopy is useful for the evaluation of neuronal changes in children with Tay-Sachs disease.

Time-Resolved Spectroscopy and Near Infrared Imaging for Prostate Cancer Detection: Receptor-targeted and Native Biomarker

Science.gov (United States)

Pu, Yang

Optical spectroscopy and imaging using near-infrared (NIR) light provides powerful tools for non-invasive detection of cancer in tissue. Optical techniques are capable of quantitative reconstructions maps of tissue absorption and scattering properties, thus can map in vivo the differences in the content of certain marker chromophores and/or fluorophores in normal and cancerous tissues (for example: water, tryptophan, collagen and NADH contents). Potential clinical applications of optical spectroscopy and imaging include functional tumor detection and photothermal therapeutics. Optical spectroscopy and imaging apply contrasts from intrinsic tissue chromophores such as water, collagen and NADH, and extrinsic optical contrast agents such as Indocyanine Green (ICG) to distinguish disease tissue from the normal one. Fluorescence spectroscopy and imaging also gives high sensitivity and specificity for biomedical diagnosis. Recent developments on specific-targeting fluorophores such as small receptor-targeted dye-peptide conjugate contrast agent offer high contrast between normal and cancerous tissues hence provide promising future for early tumour detection. This thesis focus on a study to distinguish the cancerous prostate tissue from the normal prostate tissues with enhancement of specific receptor-targeted prostate cancer contrast agents using optical spectroscopy and imaging techniques. The scattering and absorption coefficients, and anisotropy factor of cancerous and normal prostate tissues were investigated first as the basis for the biomedical diagnostic and optical imaging. Understanding the receptors over-expressed prostate cancer cells and molecular target mechanism of ligand, two small ICG-derivative dye-peptides, namely Cypate-Bombesin Peptide Analogue Conjugate (Cybesin) and Cypate-Octreotate Peptide Conjugate (Cytate), were applied to study their clinical potential for human prostate cancer detection. In this work, the steady-state and time

Epidemiological geomatics in evaluation of mine risk education in Afghanistan: introducing population weighted raster maps

Directory of Open Access Journals (Sweden)

Andersson Neil

2006-01-01

Full Text Available Abstract Evaluation of mine risk education in Afghanistan used population weighted raster maps as an evaluation tool to assess mine education performance, coverage and costs. A stratified last-stage random cluster sample produced representative data on mine risk and exposure to education. Clusters were weighted by the population they represented, rather than the land area. A "friction surface" hooked the population weight into interpolation of cluster-specific indicators. The resulting population weighted raster contours offer a model of the population effects of landmine risks and risk education. Five indicator levels ordered the evidence from simple description of the population-weighted indicators (level 0, through risk analysis (levels 1–3 to modelling programme investment and local variations (level 4. Using graphic overlay techniques, it was possible to metamorphose the map, portraying the prediction of what might happen over time, based on the causality models developed in the epidemiological analysis. Based on a lattice of local site-specific predictions, each cluster being a small universe, the "average" prediction was immediately interpretable without losing the spatial complexity.

Population weighted raster maps can communicate findings of social audits: examples from three continents

Directory of Open Access Journals (Sweden)

Mitchell Steven

2011-12-01

Full Text Available Abstract Background Maps can portray trends, patterns, and spatial differences that might be overlooked in tabular data and are now widely used in health research. Little has been reported about the process of using maps to communicate epidemiological findings. Method Population weighted raster maps show colour changes over the study area. Similar to the rasters of barometric pressure in a weather map, data are the health occurrence – a peak on the map represents a higher value of the indicator in question. The population relevance of each sentinel site, as determined in the stratified last stage random sample, combines with geography (inverse-distance weighting to provide a population-weighted extension of each colour. This transforms the map to show population space rather than simply geographic space. Results Maps allowed discussion of strategies to reduce violence against women in a context of political sensitivity about quoting summary indicator figures. Time-series maps showed planners how experiences of health services had deteriorated despite a reform programme; where in a country HIV risk behaviours were improving; and how knowledge of an economic development programme quickly fell off across a region. Change maps highlighted where indicators were improving and where they were deteriorating. Maps of potential impact of interventions, based on multivariate modelling, displayed how partial and full implementation of programmes could improve outcomes across a country. Scale depends on context. To support local planning, district maps or local government authority maps of health indicators were more useful than national maps; but multinational maps of outcomes were more useful for regional institutions. Mapping was useful to illustrate in which districts enrolment in religious schools – a rare occurrence - was more prevalent. Conclusions Population weighted raster maps can present social audit findings in an accessible and compelling

Population weighted raster maps can communicate findings of social audits: examples from three continents.

Science.gov (United States)

Mitchell, Steven; Cockcroft, Anne; Andersson, Neil

2011-12-21

Maps can portray trends, patterns, and spatial differences that might be overlooked in tabular data and are now widely used in health research. Little has been reported about the process of using maps to communicate epidemiological findings. Population weighted raster maps show colour changes over the study area. Similar to the rasters of barometric pressure in a weather map, data are the health occurrence--a peak on the map represents a higher value of the indicator in question. The population relevance of each sentinel site, as determined in the stratified last stage random sample, combines with geography (inverse-distance weighting) to provide a population-weighted extension of each colour. This transforms the map to show population space rather than simply geographic space. Maps allowed discussion of strategies to reduce violence against women in a context of political sensitivity about quoting summary indicator figures. Time-series maps showed planners how experiences of health services had deteriorated despite a reform programme; where in a country HIV risk behaviours were improving; and how knowledge of an economic development programme quickly fell off across a region. Change maps highlighted where indicators were improving and where they were deteriorating. Maps of potential impact of interventions, based on multivariate modelling, displayed how partial and full implementation of programmes could improve outcomes across a country. Scale depends on context. To support local planning, district maps or local government authority maps of health indicators were more useful than national maps; but multinational maps of outcomes were more useful for regional institutions. Mapping was useful to illustrate in which districts enrolment in religious schools--a rare occurrence--was more prevalent. Population weighted raster maps can present social audit findings in an accessible and compelling way, increasing the use of evidence by planners with limited numeracy

PRISM (Polarized Radiation Imaging and Spectroscopy Mission): an extended white paper

NARCIS (Netherlands)

André, Philippe; Baccigalupi, Carlo; Banday, Anthony; Barbosa, Domingos; Barreiro, Belen; Bartlett, James; Bartolo, Nicola; Battistelli, Elia; Battye, Richard; Bendo, George; Benoît, Alain; Bernard, Jean-Philippe; Bersanelli, Marco; Béthermin, Matthieu; Bielewicz, Pawel; Bonaldi, Anna; Bouchet, François; Boulanger, François; Brand, Jan; Bucher, Martin; Burigana, Carlo; Cai, Zhen-Yi; Camus, Philippe; Casas, Francisco; Casasola, Viviana; Castex, Guillaume; Challinor, Anthony; Chluba, Jens; Chon, Gayoung; Colafrancesco, Sergio; Comis, Barbara; Cuttaia, Francesco; D'Alessandro, Giuseppe; Da Silva, Antonio; Davis, Richard; de Avillez, Miguel; de Bernardis, Paolo; de Petris, Marco; de Rosa, Adriano; de Zotti, Gianfranco; Delabrouille, Jacques; Désert, François-Xavier; Dickinson, Clive; Diego, Jose Maria; Dunkley, Joanna; Enßlin, Torsten; Errard, Josquin; Falgarone, Edith; Ferreira, Pedro; Ferrière, Katia; Finelli, Fabio; Fletcher, Andrew; Fosalba, Pablo; Fuller, Gary; Galli, Silvia; Ganga, Ken; García-Bellido, Juan; Ghribi, Adnan; Giard, Martin; Giraud-Héraud, Yannick; Gonzalez-Nuevo, Joaquin; Grainge, Keith; Gruppuso, Alessandro; Hall, Alex; Hamilton, Jean-Christophe; Haverkorn, Marijke; Hernandez-Monteagudo, Carlos; Herranz, Diego; Jackson, Mark; Jaffe, Andrew; Khatri, Rishi; Kunz, Martin; Lamagna, Luca; Lattanzi, Massimiliano; Leahy, Paddy; Lesgourgues, Julien; Liguori, Michele; Liuzzo, Elisabetta; Lopez-Caniego, Marcos; Macias-Perez, Juan; Maffei, Bruno; Maino, Davide; Mangilli, Anna; Martinez-Gonzalez, Enrique; Martins, Carlos J. A. P.; Masi, Silvia; Massardi, Marcella; Matarrese, Sabino; Melchiorri, Alessandro; Melin, Jean-Baptiste; Mennella, Aniello; Mignano, Arturo; Miville-Deschênes, Marc-Antoine; Monfardini, Alessandro; Murphy, Anthony; Naselsky, Pavel; Nati, Federico; Natoli, Paolo; Negrello, Mattia; Noviello, Fabio; O'Sullivan, Créidhe; Paci, Francesco; Pagano, Luca; Paladino, Rosita; Palanque-Delabrouille, Nathalie; Paoletti, Daniela; Peiris, Hiranya; Perrotta, Francesca; Piacentini, Francesco; Piat, Michel; Piccirillo, Lucio; Pisano, Giampaolo; Polenta, Gianluca; Pollo, Agnieszka; Ponthieu, Nicolas; Remazeilles, Mathieu; Ricciardi, Sara; Roman, Matthieu; Rosset, Cyrille; Rubino-Martin, Jose-Alberto; Salatino, Maria; Schillaci, Alessandro; Shellard, Paul; Silk, Joseph; Starobinsky, Alexei; Stompor, Radek; Sunyaev, Rashid; Tartari, Andrea; Terenzi, Luca; Toffolatti, Luigi; Tomasi, Maurizio; Trappe, Neil; Tristram, Matthieu; Trombetti, Tiziana; Tucci, Marco; Van de Weijgaert, Rien; Van Tent, Bartjan; Verde, Licia; Vielva, Patricio; Wandelt, Ben; Watson, Robert; Withington, Stafford

2014-01-01

PRISM (Polarized Radiation Imaging and Spectroscopy Mission) was proposed to ESA in May 2013 as a large-class mission for investigating within the framework of the ESA Cosmic Vision program a set of important scientific questions that require high resolution, high sensitivity, full-sky observations

The Advanced X-ray Spectroscopy and Imaging Observatory (AXSIO)

Science.gov (United States)

White, Nicholas E.; Bookbinder, Jay; Petre, Robert; Smith, Randall; Ptak, Andrew; Tananbaum, Harvey; Garcia, Michael

2012-01-01

Following recommendations from the 2010 "New Worlds, New Horizons" (NWNH) report, the Advanced X-ray Spectroscopy and Imaging Observatory (AXSIO) concept streamlines the International X-ray Observatory (IXO) mission to concentrate on the science objectives that are enabled by high-resolution spectroscopic capabilities. AXSIO will trace orbits close to the event horizon of black holes, measure black hole spin for tens of supermassive black holes (SMBH), use spectroscopy to characterize outflows and the environment of AGN during their peak activity, observe 5MBH out to redshift z=6, map bulk motions and turbulence in galaxy clusters, find the missing baryons in the cosmic web using background quasars, and observe the process of cosmic feedback where black holes and supernovae inject energy on galactic and intergalactic scales. These measurements are enabled by a 0.9 sq m collecting area at 1.25 keV, a micro calorimeter array providing high-resolution spectroscopic imaging and a deployable high efficiency grating spectrometer. AXSIO delivers a 30-fold increase in effective area for high resolution spectroscopy. The key simplifications are guided by recommendations in the NWNH panel report include a reduction in focal length from 20m to 10m, eliminating the extendable optical bench, and a reduction in the instrument complement from six to two, avoiding a movable instrument platform. A focus on spectroscopic science allows the spatial resolution requirement to be relaxed to 10 arc sec (with a 5 arc sec goal). These simplifications decrease the total mission cost to under the $2B cost to NASA recommended by NWNH. AXSIO will be available to the entire astronomical community with observing allocations based on peer-review.

Using raster and vector data to identify objects for classify in flood risk. A case study: Raciborz

Science.gov (United States)

Porczek, Mariusz; Rucińska, Dorota; Lewiński, Stanisław

2018-01-01

The severe flood of 1997, which seriously affected Polish, Czech and German territories, gave impetus to research into the management of flood-prone areas. The material losses caused by the "Flood of the Millennium" totalled billions of Polish zloty. The extent of the disaster and of infrastructure repair costs changed the attitude of many branches of the economy, and of science. This is the direct result of consideration of the introduction of changes into spatial management and crisis management. At the same time, it focused the interest of many who were trained in analysing the vulnerability of land-use features to natural disasters such as floods. Research into the spatial distribution of geographic environmental features susceptible to flood in the Odra valley was conducted at the Faculty of Geography and Regional Studies of the University of Warsaw using Geographic Information Systems (GIS). This study seeks to examine the possibility of adapting vector and raster data and using them for land-use classification in the context of risk of flood and inundation damage. The analysed area of the city and surrounding area of Raciborz, on the upper Odra River, is a case study for identifying objects and lands susceptible to natural hazards based on publicly available satellite databases of the highest resolution, which is a very important factor in the quality of further risk analyses for applied use. The objective of the research was to create a 10×10-m-pixel raster network using raster data made available by ESA (Copernicus Land Monitoring Service) and vector data from Open Street Map.

Ambient pressure photoemission spectroscopy of metal surfaces

Energy Technology Data Exchange (ETDEWEB)

Baikie, Iain D., E-mail: iain@kptechnology.ltd.uk; Grain, Angela C.; Sutherland, James; Law, Jamie

2014-12-30

Highlights: • Ambient pressure photoemission spectroscopy of metals. • Rastered photon energy scan overcomes inelastic scattering. • Relationship between photoemission threshold and contact potential difference. - Abstract: We describe a novel photoemission technique utilizing a traditional Kelvin probe as a detector of electrons/atmospheric ions ejected from metallic surfaces (Au, Ag, Cu, Fe, Ni, Ti, Zn, Al) illuminated by a deep ultra-violet (DUV) source under ambient pressure. To surmount the limitation of electron scattering in air the incident photon energy is rastered rather than applying a variable retarding electric field as is used with UPS. This arrangement can be applied in several operational modes: using the DUV source to determine the photoemission threshold (Φ) with 30–50 meV resolution and also the Kelvin probe, under dark conditions, to measure contact potential difference (CPD) between the Kelvin probe tip and the metallic sample with an accuracy of 1–3 meV. We have studied the relationship between the photoelectric threshold and CPD of metal surfaces cleaned in ambient conditions. Inclusion of a second spectroscopic visible source was used to confirm a semiconducting oxide, possibly Cu{sub 2}O, via surface photovoltage measurements with the KP. This dual detection system can be easily extended to controlled gas conditions, relative humidity control and sample heating/cooling.

Imaging Spectroscopy for On-Farm Measurement of Grassland Yield and Quality

NARCIS (Netherlands)

Schut, A.G.T.; Heijden, van der G.W.A.M.; Hoving, I.E.; Stienezen, M.W.J.; Evert, van F.K.; Meuleman, J.

2006-01-01

Grassland management has a large influence on the operating cost and environmental impact of dairy farms and requires accurate, detailed, and timely information about the yield and quality of grass. Our objective was to evaluate imaging spectroscopy as a means to obtain accurate, detailed, and rapid

PEMODELAN FAKTOR K BERBASIS RASTER SEBAGAI MASUKAN PEMODELAN EROSI DI DAS MERAWU, BANJARNEGARA, PROVINSI JAWA TENGAH (Modeling of Raster-Based of K Factor as Input for Erosion Modeling at Merawu Catchment, Banjarnegara, Central Java Province

Directory of Open Access Journals (Sweden)

Bambang Sulistyo

2015-07-01

Full Text Available ABSTRAK Penelitian ini bertujuan untuk mengkaji ketelitian absolut pemodelan faktor K berbasis raster sebagai masukan dalam pemodelan erosi Universal Soil Loss Equation (USLE di Daerah Aliran Sungai (DAS Merawu, Banjarnegara, Provinsi Jawa Tengah.Metode yang digunakan adalah dengan mengambil 30 sampel tanah secara stratified random sampling berdasarkan bentuklahan DAS Merawu. Sampel tanah tersebut kemudian dianalisis di laboratorium sehingga diperoleh tekstur, permeabilitas, bahan organik, dan struktur yang diperlukan untuk menghitung faktor K menggunakan rumus yang sudah ada. Dari 30 sampel yang diambil, 24 sampel digunakan untuk menghitung faktor K dalam pemodelan, sedangkan 6 sampel lainnya digunakan sebagai uji model. Pengeplotan nilai K pada sampel di atas peta dilakukan sesuai dengan lokasi sampel, kemudian dilakukan digitasi dan rasterisasi dan dilakukan interpolasi spasial untuk memperoleh Peta K untuk setiap piksel dengan metode Kriging. Hasil pemodelan K tersebut (Kmodel kemudian diuji pada 6 lokasi (Kaktual untuk mengetahui ketelitian pemodelan. Kmodel dikatakan teliti jika memiliki nilai ≥ 80% terhadap Kaktual.Hasil penelitian menunjukkan bahwa pemodelan faktor K berbasis raster di DAS Merawu mempunyai ketelitian melebihi nilai ambang yang ditetapkan, yaitu sebesar 89,068%, yang menunjukkan bahwa peta hasil pemodelan menggunakan analisis Kriging dapat digunakan untuk analisis lebih lanjut dalam menghitung erosi. ABSTRACT The research was aimed at knowing the absolute accuracy of modeling of raster-based K factor as input for Universal Soil Loss Equation (USLE erosion modeling at Merawu Catchment, Banjarnegara, Central Java Province. Methodology applied was by taking 30 soil samples of stratified random sampling based on landform of Merawu Catchment. Those 30 soil samples then were analised in a laboratory to get their texture, permeability, organic matter, and structure for K factor computation using the existing formula. From 30

Medical applications of NMR imaging and NMR spectroscopy with stable isotopes. Summary

International Nuclear Information System (INIS)

Matwiyoff, N.A.

1983-01-01

The current status of NMR imaging and NMR spectroscopy are summarized. For the most part examples from the March 1983 Puerto Rico symposium are used to illustrate the utility of NMR in medicine. 18 refs., 5 figs

Medical applications of NMR imaging and NMR spectroscopy with stable isotopes. Summary

Energy Technology Data Exchange (ETDEWEB)

Matwiyoff, N.A.

1983-01-01

The current status of NMR imaging and NMR spectroscopy are summarized. For the most part examples from the March 1983 Puerto Rico symposium are used to illustrate the utility of NMR in medicine. 18 refs., 5 figs.

Module greenhouse with high efficiency of transformation of solar energy, utilizing active and passive glass optical rasters

Czech Academy of Sciences Publication Activity Database

Korečko, J.; Jirka, V.; Sourek, B.; Červený, Jan

2010-01-01

Roč. 84, č. 10 (2010), s. 1794-1808 ISSN 0038-092X Institutional research plan: CEZ:AV0Z60870520 Keywords : rasters made of glass * greenhouse * solar architecture * fresnel lens * mathematical simulation Subject RIV: BH - Optics, Masers, Lasers Impact factor: 2.135, year: 2010

MR chemical shift imaging and spectroscopy of atherosclerotic plaque

International Nuclear Information System (INIS)

Vinitski, S.; Consigny, P.M.; Shapiro, M.J.; Janes, N.; Smullens, S.N.; Rifkin, M.D.

1989-01-01

The purpose of this study was to develop a technique for in vivo imaging and characterization of atherosclerotic plaque. The authors used a spin-echo technique with a short echo time (TE) of 11 msec. Lipid/water suppression was achieved by means of hybrid chemical shift imaging. Lesions were induced in three rabbits by a combination of balloon denudation of the abdominal aorta and a high-cholesterol diet. Following in vivo imaging of these rabbit aortas and human carotid arteries (1.5 T), the animals were killed or carotid endarterectomy was performed so that the plaques could be excised. The plaques were then analyzed in vitro both histologically and with high-resolution spectroscopy (8.5 T). Use of the short TE improved lesion visualization. The fat/water suppression showed only a small amount of mobile lipids in plaque. Both MR spectroscopic and histologic analysis corroborated these images. The composition of atherosclerotic plaques in both humans and rabbits was demonstrated to be heterogeneous, with predominantly nonmobile lipids. These results suggest that the combination of short TE MR imaging and fat/water suppression can identify plaque and delineate areas containing mobile lipids

EXTRACTING SPATIOTEMPORAL OBJECTS FROM RASTER DATA TO REPRESENT PHYSICAL FEATURES AND ANALYZE RELATED PROCESSES

Directory of Open Access Journals (Sweden)

J. A. Zollweg

2017-10-01

Full Text Available Numerous ground-based, airborne, and orbiting platforms provide remotely-sensed data of remarkable spatial resolution at short time intervals. However, this spatiotemporal data is most valuable if it can be processed into information, thereby creating meaning. We live in a world of objects: cars, buildings, farms, etc. On a stormy day, we don’t see millions of cubes of atmosphere; we see a thunderstorm ‘object’. Temporally, we don’t see the properties of those individual cubes changing, we see the thunderstorm as a whole evolving and moving. There is a need to represent the bulky, raw spatiotemporal data from remote sensors as a small number of relevant spatiotemporal objects, thereby matching the human brain’s perception of the world. This presentation reveals an efficient algorithm and system to extract the objects/features from raster-formatted remotely-sensed data. The system makes use of the Python object-oriented programming language, SciPy/NumPy for matrix manipulation and scientific computation, and export/import to the GeoJSON standard geographic object data format. The example presented will show how thunderstorms can be identified and characterized in a spatiotemporal continuum using a Python program to process raster data from NOAA’s High-Resolution Rapid Refresh v2 (HRRRv2 data stream.

Extracting Spatiotemporal Objects from Raster Data to Represent Physical Features and Analyze Related Processes

Science.gov (United States)

Zollweg, J. A.

2017-10-01

Numerous ground-based, airborne, and orbiting platforms provide remotely-sensed data of remarkable spatial resolution at short time intervals. However, this spatiotemporal data is most valuable if it can be processed into information, thereby creating meaning. We live in a world of objects: cars, buildings, farms, etc. On a stormy day, we don't see millions of cubes of atmosphere; we see a thunderstorm `object'. Temporally, we don't see the properties of those individual cubes changing, we see the thunderstorm as a whole evolving and moving. There is a need to represent the bulky, raw spatiotemporal data from remote sensors as a small number of relevant spatiotemporal objects, thereby matching the human brain's perception of the world. This presentation reveals an efficient algorithm and system to extract the objects/features from raster-formatted remotely-sensed data. The system makes use of the Python object-oriented programming language, SciPy/NumPy for matrix manipulation and scientific computation, and export/import to the GeoJSON standard geographic object data format. The example presented will show how thunderstorms can be identified and characterized in a spatiotemporal continuum using a Python program to process raster data from NOAA's High-Resolution Rapid Refresh v2 (HRRRv2) data stream.

Atomic force and shear force based tip-enhanced Raman spectroscopy and imaging

NARCIS (Netherlands)

Kharintsev, S.S.; Hoffmann, G.G.; Dorozhkin, P.S.; With, de G.; Loos, J.

2007-01-01

Underlying near-field optibal effects on the nanoscale have stimulated the development of apertureless vibrational spectroscopy and imaging with ultrahigh spatial resolution. We demonstrate tip-enhanced Raman spectra of single-walled carbon nanotubes (SWCNTs), recorded with a scanning near-field

A comparison of reconstruction methods for undersampled atomic force microscopy images

International Nuclear Information System (INIS)

Luo, Yufan; Andersson, Sean B

2015-01-01

Non-raster scanning and undersampling of atomic force microscopy (AFM) images is a technique for improving imaging rate and reducing the amount of tip–sample interaction needed to produce an image. Generation of the final image can be done using a variety of image processing techniques based on interpolation or optimization. The choice of reconstruction method has a large impact on the quality of the recovered image and the proper choice depends on the sample under study. In this work we compare interpolation through the use of inpainting algorithms with reconstruction based on optimization through the use of the basis pursuit algorithm commonly used for signal recovery in compressive sensing. Using four different sampling patterns found in non-raster AFM, namely row subsampling, spiral scanning, Lissajous scanning, and random scanning, we subsample data from existing images and compare reconstruction performance against the original image. The results illustrate that inpainting generally produces superior results when the image contains primarily low frequency content while basis pursuit is better when the images have mixed, but sparse, frequency content. Using support vector machines, we then classify images based on their frequency content and sparsity and, from this classification, develop a fast decision strategy to select a reconstruction algorithm to be used on subsampled data. The performance of the classification and decision test are demonstrated on test AFM images. (paper)

Broadband x-ray imaging and spectroscopy of the crab nebula and pulsar with NuSTAR

DEFF Research Database (Denmark)

Madsen, Kristin K.; Reynolds, Stephen; Harrison, Fiona

2015-01-01

We present broadband (3-78 keV) NuSTAR X-ray imaging and spectroscopy of the Crab nebula and pulsar. We show that while the phase-averaged and spatially integrated nebula + pulsar spectrum is a power law in this energy band, spatially resolved spectroscopy of the nebula finds a break at ~9 ke...

Mapping Asphaltic Roads’ Skid Resistance Using Imaging Spectroscopy

Directory of Open Access Journals (Sweden)

Nimrod Carmon

2018-03-01

Full Text Available The purpose of this study is to evaluate a realistic feasibility of using hyperspectral remote sensing (also termed imaging spectroscopy airborne data for mapping asphaltic roads’ transportation safety. This is done by quantifying the road-tire friction, an attribute responsible for vehicle control and emergency stopping. We engaged in a real-life operational scenario, where the roads’ friction was modeled against the reflectance information extracted directly from the image. The asphalt pavement’s dynamic friction coefficient was measured by a standardized technique using a Dynatest 6875H (Dynatest Consulting Inc., Westland, MI, USA Friction Measuring System, which uses the common test-wheel retardation method. The hyperspectral data was acquired by the SPECIM AisaFenix 1K (Specim, Spectral Imaging Ltd., Oulu, Finland airborne system, covering the entire optical range (350–2500 nm, over a selected study site, with roads characterized by different aging conditions. The spectral radiance data was processed to provide apparent surface reflectance using ground calibration targets and the ACORN-6 atmospheric correction package. Our final dataset was comprised of 1370 clean asphalt pixels coupled with geo-rectified in situ friction measurement points. We developed a partial least squares regression model using PARACUDA-II spectral data mining engine, which uses an automated outlier detection procedure and dual validation routines—a full cross-validation and an iterative internal validation based on a Latin Hypercube sampling algorithm. Our results show prediction capabilities of R2 = 0.632 for full cross-validation and R2 = 0.702 for the best available model in internal validation, both with significant results (p < 0.0001. Using spectral assignment analysis, we located the spectral bands with the highest weight in the model and discussed their possible physical and chemical assignments. The derived model was applied back on the

Photoelectron Imaging Spectroscopy as a Window to Unexpected Molecules

Science.gov (United States)

Blackstone, Christopher C.

2017-06-01

Targeting an anion with the formula CH_{3}O_{3} for exploration with photoelectron imaging spectroscopy, we determine its identity to be dihydroxymethanolate, an anion largely absent in the literature, and the conjugate base of the hypothetical species orthoformic acid. Comparing the observed photoelectron spectrum to CCSD-EOM-IP and CCSD-EOM-SF calculations completed in QChem and Franck-Condon overlap simulations in PESCAL, we are able to determine with confidence the connectivity of the atoms in this molecule.

Imaging spectroscopy for early detection of nitrogen deficiency in grass swards

NARCIS (Netherlands)

Schut, A.G.T.; Ketelaars, J.J.M.H.

2003-01-01

The potential of an experimental imaging spectroscopy system with high spatial (0.16–0.28 mm²) ) and spectral resolution (5–13 nm) was explored for early detection of nitrogen (N) stress. From June through October 2000, a greenhouse experiment was conducted with 15 Lolium perenne L. mini-swards and

Applications of micro-spectroscopy and chemical imaging to delineate contaminant associations in heterogeneous mineral environments

International Nuclear Information System (INIS)

Hunter, D.

1998-01-01

location of the contaminant in the sample but also to which substrate it exhibits preferential binding. Chemical Imaging combines conventional imaging with micro-spot spectroscopy. In conventional imaging, a digitized image is stored as a series of intensity values at each image element or pixel. In chemical imaging light is recorded as both a function of wavelength and location. In the image domain, the data set contains a full image at each individual wavelength. In the spectroscopy domain, a fully resolved spectrum can be recorded at each individual pixel. As a result, the data contains both structural and compositional information, allowing samples to be probed, even dynamically, with unprecedented analytical power. Several examples will be shown where these modern spectroscopic techniques can be applied non-invasively to natural mineral bearing samples and a variety of inorganic contaminants where it can be demonstrated that even a minor mineral component can be the dominant control mechanism for contaminant binding and retardation in the environment

Method and apparatus for magnetic resonance imaging and spectroscopy using microstrip transmission line coils

Science.gov (United States)

Zhang, Xiaoliang; Ugurbil, Kamil; Chen, Wei

2006-04-04

Apparatus and method for MRI imaging using a coil constructed of microstrip transmission line (MTL coil) are disclosed. In one method, a target is positioned to be imaged within the field of a main magnetic field of a magnet resonance imaging (MRI) system, a MTL coil is positioned proximate the target, and a MRI image is obtained using the main magnet and the MTL coil. In another embodiment, the MRI coil is used for spectroscopy. MRI imaging and spectroscopy coils are formed using microstrip transmission line. These MTL coils have the advantageous property of good performance while occupying a relatively small space, thus allowing MTL coils to be used inside restricted areas more easily than some other prior art coils. In addition, the MTL coils are relatively simple to construct of inexpensive components and thus relatively inexpensive compared to other designs. Further, the MTL coils of the present invention can be readily formed in a wide variety of coil configurations, and used in a wide variety of ways. Further, while the MTL coils of the present invention work well at high field strengths and frequencies, they also work at low frequencies and in low field strengths as well.

Hard X-ray imaging with a slat collimated telescope

International Nuclear Information System (INIS)

Lu Zhuguo; Kotov, Yu.D.; Suslov, A.Yu.

1995-01-01

Imaging experiments with a slat collimated hard X-ray telescope are described in this paper demonstrating the feasibility of the direct demodulation imaging method used in hard X-ray scanning modulation experiments. On 25 September 1993 an X-ray raster scan observation of Cyg X-1 was performed in a balloon flight with the hard X-ray telescope HAPI-4. An experiment to image radioactive X-ray sources was performed in the laboratory before. In both experiments the expected X-ray images were obtained, confirming the imaging capability of this method. (orig.)

Monitoring combat wound healing by IR hyperspectral imaging

Science.gov (United States)

Howle, Chris R.; Spear, Abigail M.; Gazi, Ehsan; Crane, Nicole J.

2016-03-01

In recent conflicts, battlefield injuries consist largely of extensive soft injuries from blasts and high energy projectiles, including gunshot wounds. Repair of these large, traumatic wounds requires aggressive surgical treatment, including multiple surgical debridements to remove devitalised tissue and to reduce bacterial load. Identifying those patients with wound complications, such as infection and impaired healing, could greatly assist health care teams in providing the most appropriate and personalised care for combat casualties. Candidate technologies to enable this benefit include the fusion of imaging and optical spectroscopy to enable rapid identification of key markers. Hence, a novel system based on IR negative contrast imaging (NCI) is presented that employs an optical parametric oscillator (OPO) source comprising a periodically-poled LiNbO3 (PPLN) crystal. The crystal operates in the shortwave and midwave IR spectral regions (ca. 1.5 - 1.9 μm and 2.4 - 3.8 μm, respectively). Wavelength tuning is achieved by translating the crystal within the pump beam. System size and complexity are minimised by the use of single element detectors and the intracavity OPO design. Images are composed by raster scanning the monochromatic beam over the scene of interest; the reflection and/or absorption of the incident radiation by target materials and their surrounding environment provide a method for spatial location. Initial results using the NCI system to characterise wound biopsies are presented here.

Determining subcanopy Psidium cattleianum invasion in Hawaiian forests using imaging spectroscopy

Science.gov (United States)

Jomar Barbosa; Gregory Asner; Roberta Martin; Claire Baldeck; Flint Hughes; Tracy Johnson

2016-01-01

High-resolution airborne imaging spectroscopy represents a promising avenue for mapping the spread of invasive tree species through native forests, but for this technology to be useful to forest managers there are two main technical challenges that must be addressed: (1) mapping a single focal species amongst a diverse array of other tree species; and (2) detecting...

A new apparatus for electron-ion multiple coincidence momentum imaging spectroscopy

International Nuclear Information System (INIS)

Morishita, Y.; Kato, M.; Pruemper, G.; Liu, X.-J.; Lischke, T.; Ueda, K.; Tamenori, Y.; Oura, M.; Yamaoka, H.; Suzuki, I.H.; Saito, N.

2006-01-01

We have developed a new experimental apparatus for the electron-ion multiple coincidence momentum imaging spectroscopy in order to obtain the angular distributions of vibration-resolved photoelectrons from molecules fixed in space. The apparatus consists of a four-stage molecular supersonic jet and a spectrometer analyzing three-dimensional momenta of fragment ions and electrons in coincidence

Soil organic carbon mapping of partially vegetated agricultural fields with imaging spectroscopy

NARCIS (Netherlands)

Bartholomeus, H.; Kooistra, L.; Stevens, A.; Leeuwen, van M.; Wesemael, van B.; Ben-Dor, E.; Tychon, B.

2011-01-01

Soil Organic Carbon (SOC) is one of the key soil properties, but the large spatial variation makes continuous mapping a complex task. Imaging spectroscopy has proven to be an useful technique for mapping of soil properties, but the applicability decreases rapidly when fields are partially covered

An Approach for Foliar Trait Retrieval from Airborne Imaging Spectroscopy of Tropical Forests

Directory of Open Access Journals (Sweden)

Roberta E. Martin

2018-01-01

Full Text Available Spatial information on forest functional composition is needed to inform management and conservation efforts, yet this information is lacking, particularly in tropical regions. Canopy foliar traits underpin the functional biodiversity of forests, and have been shown to be remotely measurable using airborne 350–2510 nm imaging spectrometers. We used newly acquired imaging spectroscopy data constrained with concurrent light detection and ranging (LiDAR measurements from the Carnegie Airborne Observatory (CAO, and field measurements, to test the performance of the Spectranomics approach for foliar trait retrieval. The method was previously developed in Neotropical forests, and was tested here in the humid tropical forests of Malaysian Borneo. Multiple foliar chemical traits, as well as leaf mass per area (LMA, were estimated with demonstrable precision and accuracy. The results were similar to those observed for Neotropical forests, suggesting a more general use of the Spectranomics approach for mapping canopy traits in tropical forests. Future mapping studies using this approach can advance scientific investigations and applications based on imaging spectroscopy.

Application of fluorescence spectroscopy and imaging in the detection of a photosensitizer in photodynamic therapy

Science.gov (United States)

Zang, Lixin; Zhao, Huimin; Zhang, Zhiguo; Cao, Wenwu

2017-02-01

Photodynamic therapy (PDT) is currently an advanced optical technology in medical applications. However, the application of PDT is limited by the detection of photosensitizers. This work focuses on the application of fluorescence spectroscopy and imaging in the detection of an effective photosenzitizer, hematoporphyrin monomethyl ether (HMME). Optical properties of HMME were measured and analyzed based on its absorption and fluorescence spectra. The production mechanism of its fluorescence emission was analyzed. The detection device for HMME based on fluorescence spectroscopy was designed. Ratiometric method was applied to eliminate the influence of intensity change of excitation sources, fluctuates of excitation sources and photo detectors, and background emissions. The detection limit of this device is 6 μg/L, and it was successfully applied to the diagnosis of the metabolism of HMME in the esophageal cancer cells. To overcome the limitation of the point measurement using fluorescence spectroscopy, a two-dimensional (2D) fluorescence imaging system was established. The algorithm of the 2D fluorescence imaging system is deduced according to the fluorescence ratiometric method using bandpass filters. The method of multiple pixel point addition (MPPA) was used to eliminate fluctuates of signals. Using the method of MPPA, SNR was improved by about 30 times. The detection limit of this imaging system is 1.9 μg/L. Our systems can be used in the detection of porphyrins to improve the PDT effect.

Mr imaging and mr spectroscopy of brain metastases by mr perfusion

International Nuclear Information System (INIS)

Weber, Marc-Andre; Lichy, M.P.; Thilmann, C.; Guenther, M.; Bachert, P.; Delorme, S.; Schad, L.R.; Debus, J.; Schlemmer, H.P.; Maudsley, A.A.

2003-01-01

In follow-up examinations of irradiated brain metastases conventional contrast-enhanced morphological MR imaging is often unable to distinguish between transient radiation effects, radionecrosis, and tumor recurrence. To evaluate changes of relative cerebral blood flow (rCBF) in irradiated brain metastases arterial spin-labeling techniques (ASL) were applied and compared to the outcome of 1 H MR spectroscopy and spectroscopic imaging ( 1 H MRS, SI). Patients and methods In 2 patients follow-up examinations of irradiated brain metastases were performed on a 1.5-T tomograph (average single dose: 20 Gy/80% isodose). Relative CBF values of gray matter (GM), white matter (WM), and metastases (Met) were measured by means of the ASL techniques ITS-FAIR and Q2TIPS. 1 H MRS was performed with PRESS 1500/135. In both patients with initially hyperperfused metastases (Met/GM >1) the reduction of rCBF after stereotactic radiosurgery indicated response to treatment - even if the contrast-enhancing region increased - while increasing rCBF values indicated tumor progression. The findings were confirmed by 1 H MRS, SI and subsequent follow-up. The ASL techniques ITS-FAIR and Q2TIPS are able to monitor changes of rCBF in irradiated brain metastases. The two cases imply a possible role for ASL-MR perfusion imaging and 1 H MR spectroscopy in differentiating radiation effects from tumor progression. (orig.) [de

Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods

Science.gov (United States)

Verrelst, Jochem; Malenovský, Zbyněk; Van der Tol, Christiaan; Camps-Valls, Gustau; Gastellu-Etchegorry, Jean-Philippe; Lewis, Philip; North, Peter; Moreno, Jose

2018-06-01

An unprecedented spectroscopic data stream will soon become available with forthcoming Earth-observing satellite missions equipped with imaging spectroradiometers. This data stream will open up a vast array of opportunities to quantify a diversity of biochemical and structural vegetation properties. The processing requirements for such large data streams require reliable retrieval techniques enabling the spatiotemporally explicit quantification of biophysical variables. With the aim of preparing for this new era of Earth observation, this review summarizes the state-of-the-art retrieval methods that have been applied in experimental imaging spectroscopy studies inferring all kinds of vegetation biophysical variables. Identified retrieval methods are categorized into: (1) parametric regression, including vegetation indices, shape indices and spectral transformations; (2) nonparametric regression, including linear and nonlinear machine learning regression algorithms; (3) physically based, including inversion of radiative transfer models (RTMs) using numerical optimization and look-up table approaches; and (4) hybrid regression methods, which combine RTM simulations with machine learning regression methods. For each of these categories, an overview of widely applied methods with application to mapping vegetation properties is given. In view of processing imaging spectroscopy data, a critical aspect involves the challenge of dealing with spectral multicollinearity. The ability to provide robust estimates, retrieval uncertainties and acceptable retrieval processing speed are other important aspects in view of operational processing. Recommendations towards new-generation spectroscopy-based processing chains for operational production of biophysical variables are given.

An instrument control and data analysis program for imaging and in vivo spectroscopy

International Nuclear Information System (INIS)

Roos, M.S.; Mushlin, R.A.; Veklerov, E.; Port, J.D.; Ladd, C.; Harrison, C.G.

1987-01-01

The spectrometer control data processing environment and the libraries of macros designed are used to support imaging and in vivo spectroscopy at the Lawrence Berkeley Laboratory, the Massachusetts Institute of Technology, and the Brigham and Women's Hospital in systems ranging from a 2-T animal spectrometer to a 0.5-T whole body imager. Experiments that have been successfully implemented include multi-slice, multi-echo imaging fast steady state free precession imaging and 31 P spectroscopy. The flexibility of the macro programming structure allowed very rapid development of these macro libraries. We have demonstrated that instrumentation developed around standard hosts, buses, and operating systems can yield research tools with performance comparable to highly specialized systems. The combination of low macro instruction overhead, provision of user access to system internals, and a rich command set controlling basic acquisition and processing functions provides a foundation on which libraries of macros may be built to serve a broad range of users, perhaps more easily than a system with larger sets of less primitive commands and a more limited batch processor. Well defined program interfaces for macros and for installing commands, as well as the ability to modify instrument control code significantly broaden the range of experiments accessible to the researcher

Terahertz Spectroscopy and Imaging

CERN Document Server

Zeitler, Axel; Kuwata-Gonokami, Makoto

2013-01-01

"This book presents the current state of knowledge in the field of terahertz spectroscopy, providing a comprehensive source of information for beginners and experienced researchers alike whose interests lie in this area. The book aims to explain the fundamental physics that underpins terahertz  technology and to describe its key applications. Highlights of scientific research in the field of terahertz science are also outlined in some chapters, providing an overview as well as giving an insight into future directions for research.  Over the past decade terahertz spectroscopy has developed into one of the most rapidly growing areas of its kind, gaining an important impact across a wide range of scientific disciplines. Due to substantial advances in femtosecond laser technology, terahertz time-domain spectroscopy (THz-TDS) has established itself as the dominant spectroscopic technique for experimental scientists interested in measurements at this frequency range. In solids and liquids THz radiation is in reso...

Quantification of hepatic steatosis with T1-independent, T2-corrected MR imaging with spectral modeling of fat: blinded comparison with MR spectroscopy.

Science.gov (United States)

Meisamy, Sina; Hines, Catherine D G; Hamilton, Gavin; Sirlin, Claude B; McKenzie, Charles A; Yu, Huanzhou; Brittain, Jean H; Reeder, Scott B

2011-03-01

To prospectively compare an investigational version of a complex-based chemical shift-based fat fraction magnetic resonance (MR) imaging method with MR spectroscopy for the quantification of hepatic steatosis. This study was approved by the institutional review board and was HIPAA compliant. Written informed consent was obtained before all studies. Fifty-five patients (31 women, 24 men; age range, 24-71 years) were prospectively imaged at 1.5 T with quantitative MR imaging and single-voxel MR spectroscopy, each within a single breath hold. The effects of T2 correction, spectral modeling of fat, and magnitude fitting for eddy current correction on fat quantification with MR imaging were investigated by reconstructing fat fraction images from the same source data with different combinations of error correction. Single-voxel T2-corrected MR spectroscopy was used to measure fat fraction and served as the reference standard. All MR spectroscopy data were postprocessed at a separate institution by an MR physicist who was blinded to MR imaging results. Fat fractions measured with MR imaging and MR spectroscopy were compared statistically to determine the correlation (r(2)), and the slope and intercept as measures of agreement between MR imaging and MR spectroscopy fat fraction measurements, to determine whether MR imaging can help quantify fat, and examine the importance of T2 correction, spectral modeling of fat, and eddy current correction. Two-sided t tests (significance level, P = .05) were used to determine whether estimated slopes and intercepts were significantly different from 1.0 and 0.0, respectively. Sensitivity and specificity for the classification of clinically significant steatosis were evaluated. Overall, there was excellent correlation between MR imaging and MR spectroscopy for all reconstruction combinations. However, agreement was only achieved when T2 correction, spectral modeling of fat, and magnitude fitting for eddy current correction were used (r(2

Development of High Field MR Imaging and Spectroscopy Techniques of the Prostate

NARCIS (Netherlands)

Arteaga de Castro, C.S.

2013-01-01

This thesis summarizes the work of the development of new techniques for obtaining magnetic resonance imaging (MRI) and spectroscopy (MRS) of the prostate at the ultra high field of 7 tesla (T). The 7 T field strength presents various challenges such as the shortening of the wavelength and the lower

Advances in Contactless Silicon Defect and Impurity Diagnostics Based on Lifetime Spectroscopy and Infrared Imaging

Directory of Open Access Journals (Sweden)

Jan Schmidt

2007-01-01

Full Text Available This paper gives a review of some recent developments in the field of contactless silicon wafer characterization techniques based on lifetime spectroscopy and infrared imaging. In the first part of the contribution, we outline the status of different lifetime spectroscopy approaches suitable for the identification of impurities in silicon and discuss—in more detail—the technique of temperature- and injection-dependent lifetime spectroscopy. The second part of the paper focuses on the application of infrared cameras to analyze spatial inhomogeneities in silicon wafers. By measuring the infrared signal absorbed or emitted from light-generated free excess carriers, high-resolution recombination lifetime mappings can be generated within seconds to minutes. In addition, mappings of non-recombination-active trapping centers can be deduced from injection-dependent infrared lifetime images. The trap density has been demonstrated to be an important additional parameter in the characterization and assessment of solar-grade multicrystalline silicon wafers, as areas of increased trap density tend to deteriorate during solar cell processing.

Simultaneous UV Imaging and Raman Spectroscopy for the Measurement of Solvent-Mediated Phase Transformations During Dissolution Testing

DEFF Research Database (Denmark)

Ostergaard, Jesper; Wu, Jian; Naelapää, Kaisa

2014-01-01

The current work reports the simultaneous use of UV imaging and Raman spectroscopy for detailed characterization of drug dissolution behavior including solid-state phase transformations during dissolution. The dissolution of drug substances from compacts of sodium naproxen in 0.1 HCl as well as t...... of UV imaging and Raman spectroscopy offers a detailed characterization of drug dissolution behavior in a time-effective and sample-sparing manner. © 2014 Wiley Periodicals, Inc. and the American Pharmacists Association J Pharm Sci 103:1149-1156, 2014....

Prostate cancer: a comparative study of {sup 11}C-choline PET and MR imaging combined with proton MR spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Yamaguchi, Takako; Lee, Jin; Takahashi, Nobukazu; Oka, Takashi; Shizukuishi, Kazuya; Inoue, Tomio [Yokohama City University School of Medicine, Department of Radiology, Yokohama (Japan); Uemura, Hiroji; Kubota, Yoshinobu [Yokohama City University School of Medicine, Department of Urology, Kanagawa (Japan); Sasaki, Takeshi [Yokohama City University School of Medicine, Department of Pathology, Kanagawa (Japan); Endou, Hisashi [Yokohama City University School of Medicine, Department of Pharmacy, Kanagawa (Japan)

2005-07-01

Prostate cancer is difficult to visualise in its early stages using current imaging technology. The present study aimed to clarify the utility of {sup 11}C-choline PET for localising and evaluating cancer lesions in patients with prostate cancer by conducting a prospective comparison with magnetic resonance (MR) imaging combined with proton MR spectroscopy. PET and MR imaging combined with proton MR spectroscopy were performed in 20 patients with prostate cancer. Correlations among the metabolite ratio of choline + creatine to citrate (Cho+Cr/Ci) on MR spectroscopy, serum PSA and maximum standardised uptake value (SUV{sub max}) of {sup 11}C-choline were assessed. The location of the primary lesion was assessed by the site of SUV{sub max} and the laterality of the highest Cho+Cr/Ci ratio and confirmed by examination of surgical pathology specimens (n=16). PET exhibited a diagnostic sensitivity of 100% (20/20) for primary lesions, while the sensitivities of MR imaging and MR spectroscopy were 60% (12/20) and 65% (13/20), respectively. Weak linear correlations were observed between SUV{sub max} and serum PSA (r=0.52, p<0.05), and between SUV{sub max} and Cho+Cr/Ci ratio (r=0.49, p<0.05). Regarding the localisation of main primary lesions, PET results agreed with pathological findings in 13 patients (81%) ({kappa}=0.59), while MR spectroscopy results were in accordance with pathological findings in eight patients (50%) ({kappa}=0.11). This preliminary study suggests that {sup 11}C-choline PET may provide more accurate information regarding the localisation of main primary prostate cancer lesions than MR imaging/MR spectroscopy. A further clinical study of {sup 11}C-choline PET in a large number of patients suspected of prostate cancer will be necessary to determine the clinical utility of {sup 11}C-choline PET in patients who clinically require biopsy. (orig.)

Raman spectroscopy and imaging: applications in human breast cancer diagnosis.

Science.gov (United States)

Brozek-Pluska, Beata; Musial, Jacek; Kordek, Radzislaw; Bailo, Elena; Dieing, Thomas; Abramczyk, Halina

2012-08-21

The applications of spectroscopic methods in cancer detection open new possibilities in early stage diagnostics. Raman spectroscopy and Raman imaging represent novel and rapidly developing tools in cancer diagnosis. In the study described in this paper Raman spectroscopy has been employed to examine noncancerous and cancerous human breast tissues of the same patient. The most significant differences between noncancerous and cancerous tissues were found in regions characteristic for the vibrations of carotenoids, lipids and proteins. Particular attention was paid to the role played by unsaturated fatty acids in the differentiation between the noncancerous and the cancerous tissues. Comparison of Raman spectra of the noncancerous and the cancerous tissues with the spectra of oleic, linoleic, α-linolenic, γ-linolenic, docosahexaenoic and eicosapentaenoic acids has been presented. The role of sample preparation in the determination of cancer markers is also discussed in this study.

Differential laser-induced perturbation spectroscopy and fluorescence imaging for biological and materials sensing

Science.gov (United States)

Burton, Dallas Jonathan

The field of laser-based diagnostics has been a topic of research in various fields, more specifically for applications in environmental studies, military defense technologies, and medicine, among many others. In this dissertation, a novel laser-based optical diagnostic method, differential laser-induced perturbation spectroscopy (DLIPS), has been implemented in a spectroscopy mode and expanded into an imaging mode in combination with fluorescence techniques. The DLIPS method takes advantage of deep ultraviolet (UV) laser perturbation at sub-ablative energy fluences to photochemically cleave bonds and alter fluorescence signal response before and after perturbation. The resulting difference spectrum or differential image adds more information about the target specimen, and can be used in combination with traditional fluorescence techniques for detection of certain materials, characterization of many materials and biological specimen, and diagnosis of various human skin conditions. The differential aspect allows for mitigation of patient or sample variation, and has the potential to develop into a powerful, noninvasive optical sensing tool. The studies in this dissertation encompass efforts to continue the fundamental research on DLIPS including expansion of the method to an imaging mode. Five primary studies have been carried out and presented. These include the use of DLIPS in a spectroscopy mode for analysis of nitrogen-based explosives on various substrates, classification of Caribbean fruit flies versus Caribbean fruit flies that have been irradiated with gamma rays, and diagnosis of human skin cancer lesions. The nitrogen-based explosives and Caribbean fruit flies have been analyzed with the DLIPS scheme using the imaging modality, providing complementary information to the spectroscopic scheme. In each study, a comparison between absolute fluorescence signals and DLIPS responses showed that DLIPS statistically outperformed traditional fluorescence techniques

Imaging spectroscopy: Earth and planetary remote sensing with the USGS Tetracorder and expert systems

Science.gov (United States)

Clark, Roger N.; Swayze, Gregg A.; Livo, K. Eric; Kokaly, Raymond F.; Sutley, Steve J.; Dalton, J. Brad; McDougal, Robert R.; Gent, Carol A.

2003-01-01

Imaging spectroscopy is a tool that can be used to spectrally identify and spatially map materials based on their specific chemical bonds. Spectroscopic analysis requires significantly more sophistication than has been employed in conventional broadband remote sensing analysis. We describe a new system that is effective at material identification and mapping: a set of algorithms within an expert system decision‐making framework that we call Tetracorder. The expertise in the system has been derived from scientific knowledge of spectral identification. The expert system rules are implemented in a decision tree where multiple algorithms are applied to spectral analysis, additional expert rules and algorithms can be applied based on initial results, and more decisions are made until spectral analysis is complete. Because certain spectral features are indicative of specific chemical bonds in materials, the system can accurately identify and map those materials. In this paper we describe the framework of the decision making process used for spectral identification, describe specific spectral feature analysis algorithms, and give examples of what analyses and types of maps are possible with imaging spectroscopy data. We also present the expert system rules that describe which diagnostic spectral features are used in the decision making process for a set of spectra of minerals and other common materials. We demonstrate the applications of Tetracorder to identify and map surface minerals, to detect sources of acid rock drainage, and to map vegetation species, ice, melting snow, water, and water pollution, all with one set of expert system rules. Mineral mapping can aid in geologic mapping and fault detection and can provide a better understanding of weathering, mineralization, hydrothermal alteration, and other geologic processes. Environmental site assessment, such as mapping source areas of acid mine drainage, has resulted in the acceleration of site cleanup, saving

Processing Chains for Desis and Enmap Imaging Spectroscopy Data: Similarities and Differences

Science.gov (United States)

Storch, T.; Müller, R.

2017-10-01

The Earth Observation Center (EOC) of the German Aerospace Center (DLR) realizes operational processors for DESIS (DLR Earth Sensing Imaging Spectrometer) and EnMAP (Environmental Mapping and Analysis Program) high-resolution imaging spectroscopy remote sensing satellite missions. DESIS is planned to be launched in 2018 and EnMAP in 2020. The developmental (namely schedule, deployment, and team) and functional (namely processing levels, algorithms in processors, and archiving approaches) similarities and differences of the fully-automatic processors are analyzed. The processing chains generate high-quality standardized image products for users at different levels taking characterization and calibration data into account. EOC has long lasting experiences with the airborne and spaceborne acquisition, processing, and analysis of hyperspectral image data. It turns out that both activities strongly benefit from each other.

Disruption simulation experiment using high-frequency rastering electron beam as the heat source

International Nuclear Information System (INIS)

Yamazaki, S.; Seki, M.

1987-01-01

The disruption is a serious event which possibly reduces the lifetime of plasm interactive components, so the effects of the resulting high heat flux on the wall materials must be clearly identified. The authors performed disruption simulation experiments to investigate melting, evaporation, and crack initiation behaviors using an electron beam facility as the heat source. The facility was improved with a high-frequency beam rastering system which provided spatially and temporally uniform heat flux on wider test surfaces. Along with the experiments, thermal and mechanical analyses were also performed. A two-dimensional disruption thermal analysis code (DREAM) was developed for the analyses

MR diffusion imaging and MR spectroscopy of maple syrup urine disease during acute metabolic decompensation

Energy Technology Data Exchange (ETDEWEB)

Jan, Wajanat; Wang, Zhiyue J. [Department of Radiology, University of Pennsylvania School of Medicine, Children' s Hospital of Philadelphia, Pennsylvania (United States); Zimmerman, Robert A. [Department of Radiology, University of Pennsylvania School of Medicine, Children' s Hospital of Philadelphia, Pennsylvania (United States); Department of Radiology, Children' s Hospital of Philadelphia, 34th Street and Civic Center Boulevard, PA 19104, Philadelphia (United States); Berry, Gerard T.; Kaplan, Paige B.; Kaye, Edward M. [Department of Pediatrics, University of Pennsylvania School of Medicine, The Children' s Hospital of Philadelphia, Philadelphia, Pennsylvania (United States)

2003-06-01

Maple syrup urine disease (MSUD) is an inborn error of amino acid metabolism, which affects the brain tissue resulting in impairment or death if untreated. Imaging studies have shown reversible brain edema during acute metabolic decompensation. The purpose of this paper is to describe the diffusion-weighted imaging (DWI) and spectroscopy findings during metabolic decompensation and to assess the value of these findings in the prediction of patient outcome. Six patients with the diagnosis of MSUD underwent conventional MR imaging with DWI during acute presentation with metabolic decompensation. Spectroscopy with long TE was performed in four of the six patients. Follow-up examinations were performed after clinical and metabolic recovery. DWI demonstrated marked restriction of proton diffusion compatible with cytotoxic or intramyelinic sheath edema in the brainstem, basal ganglia, thalami, cerebellar and periventricular white matter and the cerebral cortex. This was accompanied by the presence of an abnormal branched-chain amino acids (BCAA) and branched-chain alpha-keto acids (BCKA) peak at 0.9 ppm as well as elevated lactate on proton spectroscopy in all four patients. The changes in all six patients were reversed with treatment without evidence of volume loss or persistent tissue damage. The presence of cytotoxic or intramyelinic edema as evidenced by restricted water diffusion on DWI, with the presence of lactate on spectroscopy, could imply imminent cell death. However, in the context of metabolic decompensation in MSUD, it appears that changes in cell osmolarity and metabolism can reverse completely after metabolic correction. (orig.)

MR diffusion imaging and MR spectroscopy of maple syrup urine disease during acute metabolic decompensation

International Nuclear Information System (INIS)

Jan, Wajanat; Wang, Zhiyue J.; Zimmerman, Robert A.; Berry, Gerard T.; Kaplan, Paige B.; Kaye, Edward M.

2003-01-01

Maple syrup urine disease (MSUD) is an inborn error of amino acid metabolism, which affects the brain tissue resulting in impairment or death if untreated. Imaging studies have shown reversible brain edema during acute metabolic decompensation. The purpose of this paper is to describe the diffusion-weighted imaging (DWI) and spectroscopy findings during metabolic decompensation and to assess the value of these findings in the prediction of patient outcome. Six patients with the diagnosis of MSUD underwent conventional MR imaging with DWI during acute presentation with metabolic decompensation. Spectroscopy with long TE was performed in four of the six patients. Follow-up examinations were performed after clinical and metabolic recovery. DWI demonstrated marked restriction of proton diffusion compatible with cytotoxic or intramyelinic sheath edema in the brainstem, basal ganglia, thalami, cerebellar and periventricular white matter and the cerebral cortex. This was accompanied by the presence of an abnormal branched-chain amino acids (BCAA) and branched-chain alpha-keto acids (BCKA) peak at 0.9 ppm as well as elevated lactate on proton spectroscopy in all four patients. The changes in all six patients were reversed with treatment without evidence of volume loss or persistent tissue damage. The presence of cytotoxic or intramyelinic edema as evidenced by restricted water diffusion on DWI, with the presence of lactate on spectroscopy, could imply imminent cell death. However, in the context of metabolic decompensation in MSUD, it appears that changes in cell osmolarity and metabolism can reverse completely after metabolic correction. (orig.)

Fourier transform infrared spectroscopy microscopic imaging classification based on spatial-spectral features

Science.gov (United States)

Liu, Lian; Yang, Xiukun; Zhong, Mingliang; Liu, Yao; Jing, Xiaojun; Yang, Qin

2018-04-01

The discrete fractional Brownian incremental random (DFBIR) field is used to describe the irregular, random, and highly complex shapes of natural objects such as coastlines and biological tissues, for which traditional Euclidean geometry cannot be used. In this paper, an anisotropic variable window (AVW) directional operator based on the DFBIR field model is proposed for extracting spatial characteristics of Fourier transform infrared spectroscopy (FTIR) microscopic imaging. Probabilistic principal component analysis first extracts spectral features, and then the spatial features of the proposed AVW directional operator are combined with the former to construct a spatial-spectral structure, which increases feature-related information and helps a support vector machine classifier to obtain more efficient distribution-related information. Compared to Haralick’s grey-level co-occurrence matrix, Gabor filters, and local binary patterns (e.g. uniform LBPs, rotation-invariant LBPs, uniform rotation-invariant LBPs), experiments on three FTIR spectroscopy microscopic imaging datasets show that the proposed AVW directional operator is more advantageous in terms of classification accuracy, particularly for low-dimensional spaces of spatial characteristics.

Quantification of Hepatic Steatosis with T1-independent, T2*-corrected MR Imaging with Spectral Modeling of Fat: Blinded Comparison with MR Spectroscopy

Science.gov (United States)

Hines, Catherine D. G.; Hamilton, Gavin; Sirlin, Claude B.; McKenzie, Charles A.; Yu, Huanzhou; Brittain, Jean H.; Reeder, Scott B.

2011-01-01

Purpose: To prospectively compare an investigational version of a complex-based chemical shift–based fat fraction magnetic resonance (MR) imaging method with MR spectroscopy for the quantification of hepatic steatosis. Materials and Methods: This study was approved by the institutional review board and was HIPAA compliant. Written informed consent was obtained before all studies. Fifty-five patients (31 women, 24 men; age range, 24–71 years) were prospectively imaged at 1.5 T with quantitative MR imaging and single-voxel MR spectroscopy, each within a single breath hold. The effects of T2* correction, spectral modeling of fat, and magnitude fitting for eddy current correction on fat quantification with MR imaging were investigated by reconstructing fat fraction images from the same source data with different combinations of error correction. Single-voxel T2-corrected MR spectroscopy was used to measure fat fraction and served as the reference standard. All MR spectroscopy data were postprocessed at a separate institution by an MR physicist who was blinded to MR imaging results. Fat fractions measured with MR imaging and MR spectroscopy were compared statistically to determine the correlation (r2), and the slope and intercept as measures of agreement between MR imaging and MR spectroscopy fat fraction measurements, to determine whether MR imaging can help quantify fat, and examine the importance of T2* correction, spectral modeling of fat, and eddy current correction. Two-sided t tests (significance level, P = .05) were used to determine whether estimated slopes and intercepts were significantly different from 1.0 and 0.0, respectively. Sensitivity and specificity for the classification of clinically significant steatosis were evaluated. Results: Overall, there was excellent correlation between MR imaging and MR spectroscopy for all reconstruction combinations. However, agreement was only achieved when T2* correction, spectral modeling of fat, and magnitude

In vivo spectroscopy

International Nuclear Information System (INIS)

Williams, S.R.; Cady, E.B.

1987-01-01

The technique which the authors describe in this chapter provides alternative information to imaging, although based upon the same physical principles. The experiments are carried out differently and have instrumental requirements which are not met by a standard imaging system. Furthermore, although the clinical efficacy of NMR imaging has been proven, clinical spectroscopy is very much in its infancy. With the exception of some specific /sup 31/P applications not is not even clear how spectroscopic investigations will be performed. This is particularly true with regard to localization techniques for investigating other than superficial organs and and in the use of /sup 1/H spectroscopy. They attempt to show what information spectroscopy can provide in principle and point out some of the problems associated with such investigations. NMR has come to the notice of the clinical community mainly through its use as an imaging technique, and many may consider spectroscopy as a secondary discipline. NMR spectroscopy, however, has a longer history than imaging and has been a standard technique in chemistry laboratories for more than two decades. It is a technique without peer for structural analysis of molecules and no new chemical compound is discovered or synthesized without an NMR spectrum being taken. The influence of molecular structure on resonant frequency has been termed the chemical shift

Proton magnetic resonance spectroscopy and perfusion magnetic resonance imaging in the evaluation of musculoskeletal tumors

International Nuclear Information System (INIS)

Costa, Flavia Martins; Setti, Marcela; Vianna, Evandro Miguelote; Domingues, Romulo Cortes; Meohas, Walter; Rezende, Jose Francisco; Gasparetto, Emerson Leandro

2009-01-01

Objective: To assess the role of proton magnetic resonance spectroscopy and dynamic contrast-enhanced magnetic resonance imaging in the differentiation between malignant and benign musculoskeletal tumors. Materials And Methods: Fifty-five patients with musculoskeletal tumors (27 malignant and 28 benign) were studied. The examinations were performed in a 1.5 T magnetic resonance scanner with standard protocol, and single voxel proton magnetic resonance spectroscopy with 135 msec echo time. The dynamic contrast study was performed using T1-weighted gradient-echo sequence after intravenous gadolinium injection. Time signal intensity curves and slope values were calculated. The statistical analysis was performed with the Levene's test, followed by a Student's t-test, besides the Pearson's chi-squared and Fischer's exact tests. Results: Proton magnetic resonance spectroscopy sensitivity, specificity and accuracy were, respectively, 87.5%, 92.3% and 90.9% (p < 0.0001). Statistically significant difference was observed in the slope (%/min) between benign (mean, 27.5%/min) and malignant (mean, 110.9%/min) lesions (p < 0.0001). Conclusion: The time-intensity curve and slope values using dynamic-enhanced perfusion magnetic resonance imaging in association with the presence of choline peak demonstrated by single voxel magnetic resonance spectroscopy study are useful in the differentiation between malignant and benign musculoskeletal tumors. (author)

Functional Near Infrared Spectroscopy: Enabling Routine Functional Brain Imaging.

Science.gov (United States)

Yücel, Meryem A; Selb, Juliette J; Huppert, Theodore J; Franceschini, Maria Angela; Boas, David A

2017-12-01

Functional Near-Infrared Spectroscopy (fNIRS) maps human brain function by measuring and imaging local changes in hemoglobin concentrations in the brain that arise from the modulation of cerebral blood flow and oxygen metabolism by neural activity. Since its advent over 20 years ago, researchers have exploited and continuously advanced the ability of near infrared light to penetrate through the scalp and skull in order to non-invasively monitor changes in cerebral hemoglobin concentrations that reflect brain activity. We review recent advances in signal processing and hardware that significantly improve the capabilities of fNIRS by reducing the impact of confounding signals to improve statistical robustness of the brain signals and by enhancing the density, spatial coverage, and wearability of measuring devices respectively. We then summarize the application areas that are experiencing rapid growth as fNIRS begins to enable routine functional brain imaging.

The Auroral Planetary Imaging and Spectroscopy (APIS) service

Science.gov (United States)

Lamy, L.; Prangé, R.; Henry, F.; Le Sidaner, P.

2015-06-01

The Auroral Planetary Imaging and Spectroscopy (APIS) service, accessible online, provides an open and interactive access to processed auroral observations of the outer planets and their satellites. Such observations are of interest for a wide community at the interface between planetology, magnetospheric and heliospheric physics. APIS consists of (i) a high level database, built from planetary auroral observations acquired by the Hubble Space Telescope (HST) since 1997 with its mostly used Far-Ultraviolet spectro-imagers, (ii) a dedicated search interface aimed at browsing efficiently this database through relevant conditional search criteria and (iii) the ability to interactively work with the data online through plotting tools developed by the Virtual Observatory (VO) community, such as Aladin and Specview. This service is VO compliant and can therefore also been queried by external search tools of the VO community. The diversity of available data and the capability to sort them out by relevant physical criteria shall in particular facilitate statistical studies, on long-term scales and/or multi-instrumental multi-spectral combined analysis.

US Participation in the Solar Orbiter Multi Element Telescope for Imaging and Spectroscopy (METIS) Project

Data.gov (United States)

National Aeronautics and Space Administration — The Multi Element Telescope for Imaging and Spectroscopy, METIS, investigation has been conceived to perform off-limb and near-Sun coronagraphy and is motivated by...

STRUCTURAL ANALYSIS OF WOOD-LEATHER PANELS BY RAMAN SPECTROSCOPY

Directory of Open Access Journals (Sweden)

Tilman Grünewald,

2012-02-01

Full Text Available Besides other ligno-cellulosic materials such as straw, rice husks, or bagasse, wet blue particles from leather production are a promising new raw material stock for wood-based panels, as they offer not only a high availability, but increase the properties of the panel with regard to fire resistance or mechanical characteristics. A panel with a mixture of 42.5% wood fibers, 42.5% wet blue leather particles, and 15% lignin adhesive was produced, and an inhomogeneous sample was prepared. An area of 9 x 10 mm was rasterized and scanned by means of Raman Spectroscopy. Furthermore, the reference spectra of the constituents, i.e. wood fiber, wet blue leather particle, and lignin powder were recorded. The obtained data were treated and analyzed using chemometric methods (principal components analysis PCA and cluster analysis. An important finding was that the reference data were not directly represented in the panels’ spectra, and the correlation matrix of the PCA was not applicable to the panel data. This indicated that chemical changes might take place during the pressing. After processing the panel Raman spectra with the help of PCA and cluster analysis, three distinctive clusters were obtained, discriminating wood, leather, and mixed regions. With the assigned spectral information, it was possible to create a spectral image of the surface.

Operational results for the raster scanning power supply system constructed at the Bevalac Biomedical Facility

International Nuclear Information System (INIS)

Stover, G.; Halliwell, J.; Nyman, M.; Dwinell, R.

1989-03-01

A raster scanning power supply for controlling an 8.0 Tesla-meter relativistic heavy-ion beam at the Biomedical Facility has been recently completed and is undergoing electrical testing before on- line operation in 1989. The scanner system will provide tightly controlled beam uniformity and off-axis treatment profiles with large aspect ratios and unusual dimensions. This article will discuss original specifications, agreement with measured results and special device performance (i.e. GTOs, FET actuator assembly, etc.). 5 refs., 4 figs

Improving the Raster Scanning Methods used with X-ray Fluorescence to See the Ancient Greek Text of Archimedes (SULI Paper)

Energy Technology Data Exchange (ETDEWEB)

Griffin, Isabella B.; /Norfolk State U. /SLAC, SSRL

2006-01-04

X-ray fluorescence is being used to detect the ancient Greek copy of Archimedes work. The copy of Archimedes text was erased with a weak acid and written over to make a prayer book in the Middle Ages. The ancient parchment, made of goat skin, has on it some of Archimedes most valuable writings. The ink in the text contains iron which will fluoresce under x-ray radiation. My research project deals with the scanning and imaging process. The palimpsest is put in a stage that moves in a raster format. As the beam hits the parchment, a germanium detector detects the iron atoms and discriminates against other elements. Since the computer scans in both forwards and backwards directions, it is imperative that each row of data lines up exactly on top of the next row. There are several parameters to consider when scanning the parchment. These parameters include: speed, count time, shutter time, x-number of points, and acceleration. Formulas were made to relate these parameters together. During the actual beam time of this project, the scanning was very slow going; it took 30 hours to scan 1/2 of a page. Using the formulas, the scientists doubled distance and speed to scan the parchment faster; however, the grey scaled data was not lined up properly causing the images to look blurred. My project was is to find out why doubling the parameters caused blurred images, and to fix the problem if it is fixable.

Pseudo-HE images derived from CARS/TPEF/SHG multimodal imaging in combination with Raman-spectroscopy as a pathological screening tool

International Nuclear Information System (INIS)

Bocklitz, Thomas W.; Salah, Firas Subhi; Vogler, Nadine; Heuke, Sandro; Chernavskaia, Olga; Schmidt, Carsten; Waldner, Maximilian J.; Greten, Florian R.; Bräuer, Rolf; Schmitt, Michael; Stallmach, Andreas; Petersen, Iver; Popp, Jürgen

2016-01-01

Due to the steadily increasing number of cancer patients worldwide the early diagnosis and treatment of cancer is a major field of research. The diagnosis of cancer is mostly performed by an experienced pathologist via the visual inspection of histo-pathological stained tissue sections. To save valuable time, low quality cryosections are frequently analyzed with diagnostic accuracies that are below those of high quality embedded tissue sections. Thus, alternative means have to be found that enable for fast and accurate diagnosis as the basis of following clinical decision making. In this contribution we will show that the combination of the three label-free non-linear imaging modalities CARS (coherent anti-Stokes Raman-scattering), TPEF (two-photon excited autofluorescence) and SHG (second harmonic generation) yields information that can be translated into computational hematoxylin and eosin (HE) images by multivariate statistics. Thereby, a computational HE stain is generated resulting in pseudo-HE overview images that allow for identification of suspicious regions. The latter are analyzed further by Raman-spectroscopy retrieving the tissue’s molecular fingerprint. The results suggest that the combination of non-linear multimodal imaging and Raman-spectroscopy possesses the potential as a precise and fast tool in routine histopathology. As the key advantage, both optical methods are non-invasive enabling for further pathological investigations of the same tissue section, e.g. a direct comparison with the current pathological gold-standard

MR Spectroscopy and Perfusion MR Imaging Findings of Intracranial Foreign Body Granuloma: a Case Report

Energy Technology Data Exchange (ETDEWEB)

Jang, Seung Won; Kim, Sang Joon; Kim, Sun Mi; Lee, Jeong Hyun; Choi, Choong Gon; Lee, Deok Hee; Lee, Jung Kyo [University of Ulsan College of Medicine, Asan Medical Center, Seoul (Korea, Republic of); Kim, Eun Ju [Philips Healthcare, Seoul (Korea, Republic of)

2010-06-15

We report a case of intracranial foreign body granuloma that showed features of a high grade tumor on magnetic resonance (MR) imaging. However, the relative cerebral blood volume was not increased in the enhancing mass on perfusion MRI and the choline/creatine ratio only slightly increased on MR spectroscopy. The results suggest that the lesion is benign in nature. Perfusion MRI and MR spectroscopy may be helpful to differentiate a foreign body granuloma from a neoplastic condition

In vivo magnetic resonance imaging and 31P spectroscopy of large human brain tumours at 1.5 tesla

DEFF Research Database (Denmark)

Thomsen, C; Jensen, K E; Achten, E

1988-01-01

31P MR spectroscopy of human brain tumours is one feature of magnetic resonance imaging. Eight patients with large superficial brain tumours and eight healthy volunteers were examined with 31P spectroscopy using an 8 cm surface coil for volume selection. Seven frequencies were resolved in our spe...

Actinomycotic brain infection: registered diffusion, perfusion MR imaging and MR spectroscopy

International Nuclear Information System (INIS)

Wang, Sumei; Wolf, Ronald L.; Woo, John H.; Melhem, Elias R.; Poptani, Harish; Wang, Jiongjiong; O'Rourke, Donald M.; Roy, Subhojit

2006-01-01

Introduction: Actinomycotic brain infection is caused by an organism of the Actinomyces genus. We report here one such case. Methods: The methods used included coregistered diffusion, perfusion and spectroscopic magnetic resonance (MR) imaging. Decreased apparent diffusion coefficient, markedly elevated fractional anisotropy (FA) and reduced cerebral blood flow were observed. MR spectroscopy demonstrated elevated amino acids, acetate and succinate. Elevated FA values may be due to the microstructure of this special brain infection. (orig.)

Prediction of soil properties using imaging spectroscopy: Considering fractional vegetation cover to improve accuracy

NARCIS (Netherlands)

Domingues Franceschini, Marston; Demattê, J.A.M.; Silva Terra, Da F.; Vicente, L.; Bartholomeus, H.M.; Souza Filho, De C.

2015-01-01

Spectroscopic techniques have become attractive to assess soil properties because they are fast, require little labor and may reduce the amount of laboratory waste produced when compared to conventional methods. Imaging spectroscopy (IS) can have further advantages compared to laboratory or field

Measuring the Earth System in a Time of Global Environmental Change with Image Spectroscopy

Science.gov (United States)

Green, Robert O.

2005-01-01

Measuring the Earth system in a time of global environmental change. Imaging Spectroscopy enables remote measurement. Remote Measurement determination of the properties of the Earth's surface and atmosphere through the physics, chemistry and biology of the interaction of electromagnetic energy with matter.

A comparison of single particle tracking and temporal image correlation spectroscopy for quantitative analysis of endosome motility

DEFF Research Database (Denmark)

Lund, F. W.; Wustner, D.

2013-01-01

Single particle tracking (SPT) is becoming a standard method to extract transport parameters from time-lapse image sequences of fluorescent vesicles in living cells. Another method to obtain these data is temporal image correlation spectroscopy (TICS), but this method is less often used for measu......Single particle tracking (SPT) is becoming a standard method to extract transport parameters from time-lapse image sequences of fluorescent vesicles in living cells. Another method to obtain these data is temporal image correlation spectroscopy (TICS), but this method is less often used...... for measurement of intracellular vesicle transport. Here, we present an extensive comparison of SPT and TICS. First we examine the effect of photobleaching, shading and noise on SPT and TICS analysis using simulated image sequences. To this end, we developed a simple photophysical model, which relates spatially...... varying illumination intensity to the bleaching propensity and fluorescence intensity of the moving particles. We found that neither SPT nor TICS are affected by photobleaching per se, but the transport parameters obtained by both methods are sensitive to the signal-to-noise ratio. In addition, the number...

Video raster stereography back shape reconstruction: a reliability study for sagittal, frontal, and transversal plane parameters.

Science.gov (United States)

Schroeder, J; Reer, R; Braumann, K M

2015-02-01

As reliability of raster stereography was proved only for sagittal plane parameters with repeated measures on the same day, the present study was aiming at investigating variability and reliability of back shape reconstruction for all dimensions (sagittal, frontal, transversal) and for different intervals. For a sample of 20 healthy volunteers, intra-individual variability (SEM and CV%) and reliability (ICC ± 95% CI) were proved for sagittal (thoracic kyphosis, lumbar lordosis, pelvis tilt angle, and trunk inclination), frontal (pelvis torsion, pelvis and trunk imbalance, vertebral side deviation, and scoliosis angle), transversal (vertebral rotation), and functional (hyperextension) spine shape reconstruction parameters for different test-retest intervals (on the same day, between-day, between-week) by means of video raster stereography. Reliability was high for the sagittal plane (pelvis tilt, kyphosis and lordosis angle, and trunk inclination: ICC > 0.90), and good to high for lumbar mobility (0.86 < ICC < 0.97). Apart from sagittal plane spinal alignment, there was a lack of certainty for a high reproducibility indicated by wider ICC confidence intervals. So, reliability was fair to high for vertebral side deviation and the scoliosis angle (0.71 < ICC < 0.95), and poor to good for vertebral rotation values as well as for frontal plane upper body and pelvis position parameters (0.65 < ICC < 0.92). Coefficients for the between-day and between-week interval were a little lower than for repeated measures on the same day. Variability (SEM) was less than 1.5° or 1.5 mm, except for trunk inclination. Relative variability (CV) was greater in global trunk position and pelvis parameters (35-98%) than in scoliosis (14-20%) or sagittal sway parameters (4-8 %). Although we found a lower reproducibility for the frontal plane, raster stereography is considered to be a reliable method for the non-invasive, three-dimensional assessment of spinal alignment in normal non

Remote imaging laser-induced breakdown spectroscopy and laser-induced fluorescence spectroscopy using nanosecond pulses from a mobile lidar system.

Science.gov (United States)

Grönlund, Rasmus; Lundqvist, Mats; Svanberg, Sune

2006-08-01

A mobile lidar system was used in remote imaging laser-induced breakdown spectroscopy (LIBS) and laser-induced fluorescence (LIF) experiments. Also, computer-controlled remote ablation of a chosen area was demonstrated, relevant to cleaning of cultural heritage items. Nanosecond frequency-tripled Nd:YAG laser pulses at 355 nm were employed in experiments with a stand-off distance of 60 meters using pulse energies of up to 170 mJ. By coaxial transmission and common folding of the transmission and reception optical paths using a large computer-controlled mirror, full elemental imaging capability was achieved on composite targets. Different spectral identification algorithms were compared in producing thematic data based on plasma or fluorescence light.

The first X-ray imaging spectroscopy of quiescent solar active regions with NuSTAR

DEFF Research Database (Denmark)

Hannah, Iain G.; Grefenstette, Brian W.; Smith, David M.

2016-01-01

We present the first observations of quiescent active regions (ARs) using the Nuclear Spectroscopic Telescope Array (NuSTAR), a focusing hard X-ray telescope capable of studying faint solar emission from high-temperature and non-thermal sources. We analyze the first directly imaged and spectrally...... resolved X-rays above 2 keV from non-flaring ARs, observed near the west limb on 2014 November 1. The NuSTAR X-ray images match bright features seen in extreme ultraviolet and soft X-rays. The NuSTAR imaging spectroscopy is consistent with isothermal emission of temperatures 3.1-4.4 MK and emission...

Nondestructive millimeter wave imaging and spectroscopy using dielectric focusing probes

International Nuclear Information System (INIS)

Hejase, Jose A.; Shane, Steven S.; Park, Kyoung Y.; Chahal, Premjeet

2014-01-01

A tool for interrogating objects over a wide band of frequencies with subwavelength resolution at small standoff distances (near field region) in the transmission mode using a single source and detector measurement setup in the millimeter wave band is presented. The design utilizes optics like principles for guiding electromagnetic millimeter waves from large cross-sectional areas to considerably smaller sub-wavelength areas. While plano-convex lenses can be used to focus waves to a fine resolution, they usually require a large stand-off distance thus resulting in alignment and spacing issues. The design procedure and simulation analysis of the focusing probes are presented in this study along with experimental verification of performance and imaging and spectroscopy examples. Nondestructive evaluation will find benefit from such an apparatus including biological tissue imaging, electronic package integrity testing, composite dielectric structure evaluation for defects and microfluidic sensing

Nondestructive millimeter wave imaging and spectroscopy using dielectric focusing probes

Energy Technology Data Exchange (ETDEWEB)

Hejase, Jose A.; Shane, Steven S.; Park, Kyoung Y.; Chahal, Premjeet [Terahertz Systems Laboratory (TeSLa) - Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI 48823 (United States)

2014-02-18

A tool for interrogating objects over a wide band of frequencies with subwavelength resolution at small standoff distances (near field region) in the transmission mode using a single source and detector measurement setup in the millimeter wave band is presented. The design utilizes optics like principles for guiding electromagnetic millimeter waves from large cross-sectional areas to considerably smaller sub-wavelength areas. While plano-convex lenses can be used to focus waves to a fine resolution, they usually require a large stand-off distance thus resulting in alignment and spacing issues. The design procedure and simulation analysis of the focusing probes are presented in this study along with experimental verification of performance and imaging and spectroscopy examples. Nondestructive evaluation will find benefit from such an apparatus including biological tissue imaging, electronic package integrity testing, composite dielectric structure evaluation for defects and microfluidic sensing.

Geospatial data sharing, online spatial analysis and processing of Indian Biodiversity data in Internet GIS domain - A case study for raster based online geo-processing

Science.gov (United States)

Karnatak, H.; Pandey, K.; Oberai, K.; Roy, A.; Joshi, D.; Singh, H.; Raju, P. L. N.; Krishna Murthy, Y. V. N.

2014-11-01

National Biodiversity Characterization at Landscape Level, a project jointly sponsored by Department of Biotechnology and Department of Space, was implemented to identify and map the potential biodiversity rich areas in India. This project has generated spatial information at three levels viz. Satellite based primary information (Vegetation Type map, spatial locations of road & village, Fire occurrence); geospatially derived or modelled information (Disturbance Index, Fragmentation, Biological Richness) and geospatially referenced field samples plots. The study provides information of high disturbance and high biological richness areas suggesting future management strategies and formulating action plans. The study has generated for the first time baseline database in India which will be a valuable input towards climate change study in the Indian Subcontinent. The spatial data generated during the study is organized as central data repository in Geo-RDBMS environment using PostgreSQL and POSTGIS. The raster and vector data is published as OGC WMS and WFS standard for development of web base geoinformation system using Service Oriented Architecture (SOA). The WMS and WFS based system allows geo-visualization, online query and map outputs generation based on user request and response. This is a typical mashup architecture based geo-information system which allows access to remote web services like ISRO Bhuvan, Openstreet map, Google map etc., with overlay on Biodiversity data for effective study on Bio-resources. The spatial queries and analysis with vector data is achieved through SQL queries on POSTGIS and WFS-T operations. But the most important challenge is to develop a system for online raster based geo-spatial analysis and processing based on user defined Area of Interest (AOI) for large raster data sets. The map data of this study contains approximately 20 GB of size for each data layer which are five in number. An attempt has been to develop system using

Imaging FTS: A Different Approach to Integral Field Spectroscopy

Directory of Open Access Journals (Sweden)

Laurent Drissen

2014-01-01

Full Text Available Imaging Fourier transform spectroscopy (iFTS is a promising, although technically very challenging, option for wide-field hyperspectral imagery. We present in this paper an introduction to the iFTS concept and its advantages and drawbacks, as well as examples of data obtained with a prototype iFTS, SpIOMM, attached to the 1.6 m telescope of the Observatoire du Mont-Mégantic: emission line ratios in the spiral galaxy NGC 628 and absorption line indices in the giant elliptical M87. We conclude by introducing SpIOMM's successor, SITELLE, which will be installed at the Canada-France-Hawaii Telescope in 2014.

Delineating Individual Trees from Lidar Data: A Comparison of Vector- and Raster-based Segmentation Approaches

Directory of Open Access Journals (Sweden)

Maggi Kelly

2013-08-01

Full Text Available Light detection and ranging (lidar data is increasingly being used for ecosystem monitoring across geographic scales. This work concentrates on delineating individual trees in topographically-complex, mixed conifer forest across the California’s Sierra Nevada. We delineated individual trees using vector data and a 3D lidar point cloud segmentation algorithm, and using raster data with an object-based image analysis (OBIA of a canopy height model (CHM. The two approaches are compared to each other and to ground reference data. We used high density (9 pulses/m2, discreet lidar data and WorldView-2 imagery to delineate individual trees, and to classify them by species or species types. We also identified a new method to correct artifacts in a high-resolution CHM. Our main focus was to determine the difference between the two types of approaches and to identify the one that produces more realistic results. We compared the delineations via tree detection, tree heights, and the shape of the generated polygons. The tree height agreement was high between the two approaches and the ground data (r2: 0.93–0.96. Tree detection rates increased for more dominant trees (8–100 percent. The two approaches delineated tree boundaries that differed in shape: the lidar-approach produced fewer, more complex, and larger polygons that more closely resembled real forest structure.

Differentiation of hemangioblastomas from pilocytic astrocytomas using 3-T magnetic resonance perfusion-weighted imaging and MR spectroscopy

Energy Technology Data Exchange (ETDEWEB)

She, D.J.; Xing, Z.; Zeng, Z.; Cao, D.R. [First Affiliated Hospital of Fujian Medical University, Department of Radiology, Fuzhou, Fujian (China); Shang, X.Y. [University of California, San Diego, Department of Medicine and the Moores UCSD Cancer Center, La Jolla, CA (United States)

2015-03-01

Hemangioblastomas and pilocytic astrocytomas (PAs) present similar imaging features on conventional MR imaging, making differential diagnosis a challenge. The purpose of this study was to evaluate the usefulness of dynamic susceptibility-weighted contrast-enhanced perfusion-weighted imaging (DSC-PWI) and proton MR spectroscopic imaging in the differentiation of hemangioblastomas and PAs. A 3.0-T MR imaging unit was used to perform DSC-PWI and conventional MR imaging on 14 patients with hemangioblastomas and 22 patients with PAs. Four patients with hemangioblastomas and 10 PA patients also underwent proton MR spectroscopy. Parameters of relative peak height (rPH) and relative percentage of signal intensity recovery (rPSR) were acquired by DSC-PWI and variables of N-acetylaspasrtate (NAA)/creatine (Cr), choline (Cho)/Cr, and lactate-lipid (Lac-Lip)/Cr by MR spectroscopy. The sensitivity, specificity, and the area under the receiver operating characteristic curve of all analyzed parameters at respective cutoff values were determined. Higher rPH but lower rPSR values were detected in hemangioblastomas compared to PAs. The NAA/Cr ratio was significantly lower in hemangioblastomas compared with PAs. The threshold values ≥3.2 for rPH provide sensitivity, specificity, positive predictive values, and negative predictive values of 85.7, 95.5, 92.3, and 91.3 %, respectively, for differentiating hemangioblastomas from PAs. The optimal threshold values were ≤0.9 for rPSR and ≤1.5 for NAA/Cr ratios in tumor. Significantly higher rPH and lower NAA/Cr were seen in patients with hemangioblastomas when compared with PA patients, suggesting that DSC-PWI and proton MR spectroscopy are helpful in the characterization and differentiation of these two types of tumors. (orig.)

Image stack alignment in full-field X-ray absorption spectroscopy using SIFT_PyOCL.

Science.gov (United States)

Paleo, Pierre; Pouyet, Emeline; Kieffer, Jérôme

2014-03-01

Full-field X-ray absorption spectroscopy experiments allow the acquisition of millions of spectra within minutes. However, the construction of the hyperspectral image requires an image alignment procedure with sub-pixel precision. While the image correlation algorithm has originally been used for image re-alignment using translations, the Scale Invariant Feature Transform (SIFT) algorithm (which is by design robust versus rotation, illumination change, translation and scaling) presents an additional advantage: the alignment can be limited to a region of interest of any arbitrary shape. In this context, a Python module, named SIFT_PyOCL, has been developed. It implements a parallel version of the SIFT algorithm in OpenCL, providing high-speed image registration and alignment both on processors and graphics cards. The performance of the algorithm allows online processing of large datasets.

Development of the high-power THz spectroscopy and imaging systems on the basis of an S-band compact electron LINAC

International Nuclear Information System (INIS)

Kuroda, R.; Taira, Y.; Tanaka, M.; Toyokawa, H.; Yamada, K.; Kumaki, M.; Tachibana, M.; Sakaue, K.; Washio, M.

2014-01-01

The high-power terahertz time-domain spectroscopy (THz-TDS) and imaging systems have been developed on the basis of an S-band compact electron linac at AIST. Such high-power THz source is strongly expected for inspection of dangerous materials in the homeland security field. The high-power THz radiations are generated in two methods with the high-brightness ultra-short electron bunch. One is THz coherent synchrotron radiation (THz-CSR) for THz imaging applications. The other is THz coherent transition radiation (THz-CTR) for the THz spectroscopy. The THz-CTR time-domain spectroscopy (TDS) has been constructed with the EO sampling method and demonstrated in freq. range between 0.1-2 THz. The absorption measurements of drug samples have been successfully performed in atmosphere. In this symposium, we will describe details of the THz-CTR-TDS and imaging experiments and a future plan of the THz applications. (author)

Pixel detectors for x-ray imaging spectroscopy in space

International Nuclear Information System (INIS)

Treis, J; Andritschke, R; Hartmann, R; Herrmann, S; Holl, P; Lauf, T; Lechner, P; Lutz, G; Meidinger, N; Porro, M; Richter, R H; Schopper, F; Soltau, H; Strueder, L

2009-01-01

Pixelated semiconductor detectors for X-ray imaging spectroscopy are foreseen as key components of the payload of various future space missions exploring the x-ray sky. Located on the platform of the new Spectrum-Roentgen-Gamma satellite, the eROSITA (extended Roentgen Survey with an Imaging Telescope Array) instrument will perform an imaging all-sky survey up to an X-ray energy of 10 keV with unprecedented spectral and angular resolution. The instrument will consist of seven parallel oriented mirror modules each having its own pnCCD camera in the focus. The satellite born X-ray observatory SIMBOL-X will be the first mission to use formation-flying techniques to implement an X-ray telescope with an unprecedented focal length of around 20 m. The detector instrumentation consists of separate high- and low energy detectors, a monolithic 128 x 128 DEPFET macropixel array and a pixellated CdZTe detector respectively, making energy band between 0.5 to 80 keV accessible. A similar concept is proposed for the next generation X-ray observatory IXO. Finally, the MIXS (Mercury Imaging X-ray Spectrometer) instrument on the European Mercury exploration mission BepiColombo will use DEPFET macropixel arrays together with a small X-ray telescope to perform a spatially resolved planetary XRF analysis of Mercury's crust. Here, the mission concepts and their scientific targets are briefly discussed, and the resulting requirements on the detector devices together with the implementation strategies are shown.

Pixel detectors for x-ray imaging spectroscopy in space

Science.gov (United States)

Treis, J.; Andritschke, R.; Hartmann, R.; Herrmann, S.; Holl, P.; Lauf, T.; Lechner, P.; Lutz, G.; Meidinger, N.; Porro, M.; Richter, R. H.; Schopper, F.; Soltau, H.; Strüder, L.

2009-03-01

Pixelated semiconductor detectors for X-ray imaging spectroscopy are foreseen as key components of the payload of various future space missions exploring the x-ray sky. Located on the platform of the new Spectrum-Roentgen-Gamma satellite, the eROSITA (extended Roentgen Survey with an Imaging Telescope Array) instrument will perform an imaging all-sky survey up to an X-ray energy of 10 keV with unprecedented spectral and angular resolution. The instrument will consist of seven parallel oriented mirror modules each having its own pnCCD camera in the focus. The satellite born X-ray observatory SIMBOL-X will be the first mission to use formation-flying techniques to implement an X-ray telescope with an unprecedented focal length of around 20 m. The detector instrumentation consists of separate high- and low energy detectors, a monolithic 128 × 128 DEPFET macropixel array and a pixellated CdZTe detector respectively, making energy band between 0.5 to 80 keV accessible. A similar concept is proposed for the next generation X-ray observatory IXO. Finally, the MIXS (Mercury Imaging X-ray Spectrometer) instrument on the European Mercury exploration mission BepiColombo will use DEPFET macropixel arrays together with a small X-ray telescope to perform a spatially resolved planetary XRF analysis of Mercury's crust. Here, the mission concepts and their scientific targets are briefly discussed, and the resulting requirements on the detector devices together with the implementation strategies are shown.

Pixel detectors for x-ray imaging spectroscopy in space

Energy Technology Data Exchange (ETDEWEB)

Treis, J; Andritschke, R; Hartmann, R; Herrmann, S; Holl, P; Lauf, T; Lechner, P; Lutz, G; Meidinger, N; Porro, M; Richter, R H; Schopper, F; Soltau, H; Strueder, L [MPI Semiconductor Laboratory, Otto-Hahn-Ring 6, D-81739 Munich (Germany)], E-mail: jft@hll.mpg.de

2009-03-15

Pixelated semiconductor detectors for X-ray imaging spectroscopy are foreseen as key components of the payload of various future space missions exploring the x-ray sky. Located on the platform of the new Spectrum-Roentgen-Gamma satellite, the eROSITA (extended Roentgen Survey with an Imaging Telescope Array) instrument will perform an imaging all-sky survey up to an X-ray energy of 10 keV with unprecedented spectral and angular resolution. The instrument will consist of seven parallel oriented mirror modules each having its own pnCCD camera in the focus. The satellite born X-ray observatory SIMBOL-X will be the first mission to use formation-flying techniques to implement an X-ray telescope with an unprecedented focal length of around 20 m. The detector instrumentation consists of separate high- and low energy detectors, a monolithic 128 x 128 DEPFET macropixel array and a pixellated CdZTe detector respectively, making energy band between 0.5 to 80 keV accessible. A similar concept is proposed for the next generation X-ray observatory IXO. Finally, the MIXS (Mercury Imaging X-ray Spectrometer) instrument on the European Mercury exploration mission BepiColombo will use DEPFET macropixel arrays together with a small X-ray telescope to perform a spatially resolved planetary XRF analysis of Mercury's crust. Here, the mission concepts and their scientific targets are briefly discussed, and the resulting requirements on the detector devices together with the implementation strategies are shown.

Microscopic resolution broadband dielectric spectroscopy

International Nuclear Information System (INIS)

Mukherjee, S; Watson, P; Prance, R J

2011-01-01

Results are presented for a non-contact measurement system capable of micron level spatial resolution. It utilises the novel electric potential sensor (EPS) technology, invented at Sussex, to image the electric field above a simple composite dielectric material. EP sensors may be regarded as analogous to a magnetometer and require no adjustments or offsets during either setup or use. The sample consists of a standard glass/epoxy FR4 circuit board, with linear defects machined into the surface by a PCB milling machine. The sample is excited with an a.c. signal over a range of frequencies from 10 kHz to 10 MHz, from the reverse side, by placing it on a conducting sheet connected to the source. The single sensor is raster scanned over the surface at a constant working distance, consistent with the spatial resolution, in order to build up an image of the electric field, with respect to the reference potential. The results demonstrate that both the surface defects and the internal dielectric variations within the composite may be imaged in this way, with good contrast being observed between the glass mat and the epoxy resin.

Microscopic resolution broadband dielectric spectroscopy

Science.gov (United States)

Mukherjee, S.; Watson, P.; Prance, R. J.

2011-08-01

Results are presented for a non-contact measurement system capable of micron level spatial resolution. It utilises the novel electric potential sensor (EPS) technology, invented at Sussex, to image the electric field above a simple composite dielectric material. EP sensors may be regarded as analogous to a magnetometer and require no adjustments or offsets during either setup or use. The sample consists of a standard glass/epoxy FR4 circuit board, with linear defects machined into the surface by a PCB milling machine. The sample is excited with an a.c. signal over a range of frequencies from 10 kHz to 10 MHz, from the reverse side, by placing it on a conducting sheet connected to the source. The single sensor is raster scanned over the surface at a constant working distance, consistent with the spatial resolution, in order to build up an image of the electric field, with respect to the reference potential. The results demonstrate that both the surface defects and the internal dielectric variations within the composite may be imaged in this way, with good contrast being observed between the glass mat and the epoxy resin.

Reconstruction Algorithms in Undersampled AFM Imaging

DEFF Research Database (Denmark)

Arildsen, Thomas; Oxvig, Christian Schou; Pedersen, Patrick Steffen

2016-01-01

This paper provides a study of spatial undersampling in atomic force microscopy (AFM) imaging followed by different image reconstruction techniques based on sparse approximation as well as interpolation. The main reasons for using undersampling is that it reduces the path length and thereby...... the scanning time as well as the amount of interaction between the AFM probe and the specimen. It can easily be applied on conventional AFM hardware. Due to undersampling, it is then necessary to further process the acquired image in order to reconstruct an approximation of the image. Based on real AFM cell...... images, our simulations reveal that using a simple raster scanning pattern in combination with conventional image interpolation performs very well. Moreover, this combination enables a reduction by a factor 10 of the scanning time while retaining an average reconstruction quality around 36 dB PSNR...

Metabolomic imaging of prostate cancer with magnetic resonance spectroscopy and mass spectrometry

International Nuclear Information System (INIS)

Spur, Eva-Margarete; Decelle, Emily A.; Cheng, Leo L.

2013-01-01

Metabolomic imaging of prostate cancer (PCa) aims to improve in vivo imaging capability so that PCa tumors can be localized noninvasively to guide biopsy and evaluated for aggressiveness prior to prostatectomy, as well as to assess and monitor PCa growth in patients with asymptomatic PCa newly diagnosed by biopsy. Metabolomics studies global variations of metabolites with which malignancy conditions can be evaluated by profiling the entire measurable metabolome, instead of focusing only on certain metabolites or isolated metabolic pathways. At present, PCa metabolomics is mainly studied by magnetic resonance spectroscopy (MRS) and mass spectrometry (MS). With MRS imaging, the anatomic image, obtained from magnetic resonance imaging, is mapped with values of disease condition-specific metabolomic profiles calculated from MRS of each location. For example, imaging of removed whole prostates has demonstrated the ability of metabolomic profiles to differentiate cancerous foci from histologically benign regions. Additionally, MS metabolomic imaging of prostate biopsies has uncovered metabolomic expression patterns that could discriminate between PCa and benign tissue. Metabolomic imaging offers the potential to identify cancer lesions to guide prostate biopsy and evaluate PCa aggressiveness noninvasively in vivo, or ex vivo to increase the power of pathology analysis. Potentially, this imaging ability could be applied not only to PCa, but also to different tissues and organs to evaluate other human malignancies and metabolic diseases. (orig.)

Metabolomic imaging of prostate cancer with magnetic resonance spectroscopy and mass spectrometry

Energy Technology Data Exchange (ETDEWEB)

Spur, Eva-Margarete [Massachusetts General Hospital, Harvard Medical School, Department of Pathology, Boston, MA (United States); Massachusetts General Hospital, Harvard Medical School, Department of Radiology, Boston, MA (United States); Charite Universitaetsmedizin, Berlin (Germany); Decelle, Emily A.; Cheng, Leo L. [Massachusetts General Hospital, Harvard Medical School, Department of Pathology, Boston, MA (United States); Massachusetts General Hospital, Harvard Medical School, Department of Radiology, Boston, MA (United States)

2013-07-15

Metabolomic imaging of prostate cancer (PCa) aims to improve in vivo imaging capability so that PCa tumors can be localized noninvasively to guide biopsy and evaluated for aggressiveness prior to prostatectomy, as well as to assess and monitor PCa growth in patients with asymptomatic PCa newly diagnosed by biopsy. Metabolomics studies global variations of metabolites with which malignancy conditions can be evaluated by profiling the entire measurable metabolome, instead of focusing only on certain metabolites or isolated metabolic pathways. At present, PCa metabolomics is mainly studied by magnetic resonance spectroscopy (MRS) and mass spectrometry (MS). With MRS imaging, the anatomic image, obtained from magnetic resonance imaging, is mapped with values of disease condition-specific metabolomic profiles calculated from MRS of each location. For example, imaging of removed whole prostates has demonstrated the ability of metabolomic profiles to differentiate cancerous foci from histologically benign regions. Additionally, MS metabolomic imaging of prostate biopsies has uncovered metabolomic expression patterns that could discriminate between PCa and benign tissue. Metabolomic imaging offers the potential to identify cancer lesions to guide prostate biopsy and evaluate PCa aggressiveness noninvasively in vivo, or ex vivo to increase the power of pathology analysis. Potentially, this imaging ability could be applied not only to PCa, but also to different tissues and organs to evaluate other human malignancies and metabolic diseases. (orig.)

The Polarized Radiation Imaging and Spectroscopy Mission

CERN Document Server

André, Philippe; Banday, Anthony; Barbosa, Domingos; Barreiro, Belen; Bartlett, James; Bartolo, Nicola; Battistelli, Elia; Battye, Richard; Bendo, George; Benoȋt, Alain; Bernard, Jean-Philippe; Bersanelli, Marco; Béthermin, Matthieu; Bielewicz, Pawel; Bonaldi, Anna; Bouchet, François; Boulanger, François; Brand, Jan; Bucher, Martin; Burigana, Carlo; Cai, Zhen-Yi; Camus, Philippe; Casas, Francisco; Casasola, Viviana; Castex, Guillaume; Challinor, Anthony; Chluba, Jens; Chon, Gayoung; Colafrancesco, Sergio; Comis, Barbara; Cuttaia, Francesco; D'Alessandro, Giuseppe; Da Silva, Antonio; Davis, Richard; de Avillez, Miguel; de Bernardis, Paolo; de Petris, Marco; de Rosa, Adriano; de Zotti, Gianfranco; Delabrouille, Jacques; Désert, François-Xavier; Dickinson, Clive; Diego, Jose Maria; Dunkley, Joanna; Enßlin, Torsten; Errard, Josquin; Falgarone, Edith; Ferreira, Pedro; Ferrière, Katia; Finelli, Fabio; Fletcher, Andrew; Fosalba, Pablo; Fuller, Gary; Galli, Silvia; Ganga, Ken; García-Bellido, Juan; Ghribi, Adnan; Giard, Martin; Giraud-Héraud, Yannick; Gonzalez-Nuevo, Joaquin; Grainge, Keith; Gruppuso, Alessandro; Hall, Alex; Hamilton, Jean-Christophe; Haverkorn, Marijke; Hernandez-Monteagudo, Carlos; Herranz, Diego; Jackson, Mark; Jaffe, Andrew; Khatri, Rishi; Kunz, Martin; Lamagna, Luca; Lattanzi, Massimiliano; Leahy, Paddy; Lesgourgues, Julien; Liguori, Michele; Liuzzo, Elisabetta; Lopez-Caniego, Marcos; Macias-Perez, Juan; Maffei, Bruno; Maino, Davide; Mangilli, Anna; Martinez-Gonzalez, Enrique; Martins, Carlos J.A.P.; Masi, Silvia; Massardi, Marcella; Matarrese, Sabino; Melchiorri, Alessandro; Melin, Jean-Baptiste; Mennella, Aniello; Mignano, Arturo; Miville-Deschênes, Marc-Antoine; Monfardini, Alessandro; Murphy, Anthony; Naselsky, Pavel; Nati, Federico; Natoli, Paolo; Negrello, Mattia; Noviello, Fabio; O'Sullivan, Créidhe; Paci, Francesco; Pagano, Luca; Paladino, Rosita; Palanque-Delabrouille, Nathalie; Paoletti, Daniela; Peiris, Hiranya; Perrotta, Francesca; Piacentini, Francesco; Piat, Michel; Piccirillo, Lucio; Pisano, Giampaolo; Polenta, Gianluca; Pollo, Agnieszka; Ponthieu, Nicolas; Remazeilles, Mathieu; Ricciardi, Sara; Roman, Matthieu; Rosset, Cyrille; Rubino-Martin, Jose-Alberto; Salatino, Maria; Schillaci, Alessandro; Shellard, Paul; Silk, Joseph; Starobinsky, Alexei; Stompor, Radek; Sunyaev, Rashid; Tartari, Andrea; Terenzi, Luca; Toffolatti, Luigi; Tomasi, Maurizio; Trappe, Neil; Tristram, Matthieu; Trombetti, Tiziana; Tucci, Marco; Van de Weijgaert, Rien; Van Tent, Bartjan; Verde, Licia; Vielva, Patricio; Wandelt, Ben; Watson, Robert; Withington, Stafford; Cabrera, Nicolas

2014-01-01

PRISM (Polarized Radiation Imaging and Spectroscopy Mission) was proposed to ESA in May 2013 as a large-class mission for investigating within the framework of the ESA Cosmic Vision program a set of important scientific questions that require high resolution, high sensitivity, full-sky observations of the sky emission at wavelengths ranging from millimeter-wave to the far-infrared. PRISM's main objective is to explore the distant universe, probing cosmic history from very early times until now as well as the structures, distribution of matter, and velocity flows throughout our Hubble volume. PRISM will survey the full sky in a large number of frequency bands in both intensity and polarization and will measure the absolute spectrum of sky emission more than three orders of magnitude better than COBE FIRAS. The aim of this Extended White Paper is to provide a more detailed overview of the highlights of the new science that will be made possible by PRISM

Magnetic resonance imaging and spectroscopy at ultra high fields

International Nuclear Information System (INIS)

Neuberger, Thomas

2009-01-01

The goal of the work presented in this thesis was to explore the possibilities and limitations of MRI / MRS using an ultra high field of 17.6 tesla. A broad range of specific applications and MR methods, from MRI to MRSI and MRS were investigated. The main foci were on sodium magnetic resonance spectroscopic imaging of rodents, magnetic resonance spectroscopy of the mouse brain, and the detection of small amounts of iron labeled stem cells in the rat brain using MRI Sodium spectroscopic imaging was explored since it benefits tremendously from the high magnetic field. Due to the intrinsically low signal in vivo, originating from the low concentrations and short transverse relaxation times, only limited results have been achieved by other researchers until now. Results in the literature include studies conducted on large animals such as dogs to animals as small as rats. No studies performed on mice have been reported, despite the fact that the mouse is the most important laboratory animal due to the ready availability of transgenic strains. Hence, this study concentrated on sodium MRSI of small rodents, mostly mice (brain, heart, and kidney), and in the case of the brain on young rats. The second part of this work concentrated on proton magnetic resonance spectroscopy of the rodent brain. Due to the high magnetic field strength not only the increasing signal but also the extended spectral resolution was advantageous for such kind of studies. The difficulties/limitations of ultra high field MRS were also investigated. In the last part of the presented work detection limits of iron labeled stem cells in vivo using magnetic resonance imaging were explored. The studies provided very useful benchmarks for future researchers in terms of the number of labeled stem cells that are required for high-field MRI studies. Overall this work has shown many of the benefits and the areas that need special attention of ultra high fields in MR. Three topics in MRI, MRS and MRSI were

Magnetic resonance imaging and spectroscopy at ultra high fields

Energy Technology Data Exchange (ETDEWEB)

Neuberger, Thomas

2009-06-23

The goal of the work presented in this thesis was to explore the possibilities and limitations of MRI / MRS using an ultra high field of 17.6 tesla. A broad range of specific applications and MR methods, from MRI to MRSI and MRS were investigated. The main foci were on sodium magnetic resonance spectroscopic imaging of rodents, magnetic resonance spectroscopy of the mouse brain, and the detection of small amounts of iron labeled stem cells in the rat brain using MRI Sodium spectroscopic imaging was explored since it benefits tremendously from the high magnetic field. Due to the intrinsically low signal in vivo, originating from the low concentrations and short transverse relaxation times, only limited results have been achieved by other researchers until now. Results in the literature include studies conducted on large animals such as dogs to animals as small as rats. No studies performed on mice have been reported, despite the fact that the mouse is the most important laboratory animal due to the ready availability of transgenic strains. Hence, this study concentrated on sodium MRSI of small rodents, mostly mice (brain, heart, and kidney), and in the case of the brain on young rats. The second part of this work concentrated on proton magnetic resonance spectroscopy of the rodent brain. Due to the high magnetic field strength not only the increasing signal but also the extended spectral resolution was advantageous for such kind of studies. The difficulties/limitations of ultra high field MRS were also investigated. In the last part of the presented work detection limits of iron labeled stem cells in vivo using magnetic resonance imaging were explored. The studies provided very useful benchmarks for future researchers in terms of the number of labeled stem cells that are required for high-field MRI studies. Overall this work has shown many of the benefits and the areas that need special attention of ultra high fields in MR. Three topics in MRI, MRS and MRSI were

Voxel-based Monte Carlo simulation of X-ray imaging and spectroscopy experiments

International Nuclear Information System (INIS)

Bottigli, U.; Brunetti, A.; Golosio, B.; Oliva, P.; Stumbo, S.; Vincze, L.; Randaccio, P.; Bleuet, P.; Simionovici, A.; Somogyi, A.

2004-01-01

A Monte Carlo code for the simulation of X-ray imaging and spectroscopy experiments in heterogeneous samples is presented. The energy spectrum, polarization and profile of the incident beam can be defined so that X-ray tube systems as well as synchrotron sources can be simulated. The sample is modeled as a 3D regular grid. The chemical composition and density is given at each point of the grid. Photoelectric absorption, fluorescent emission, elastic and inelastic scattering are included in the simulation. The core of the simulation is a fast routine for the calculation of the path lengths of the photon trajectory intersections with the grid voxels. The voxel representation is particularly useful for samples that cannot be well described by a small set of polyhedra. This is the case of most naturally occurring samples. In such cases, voxel-based simulations are much less expensive in terms of computational cost than simulations on a polygonal representation. The efficient scheme used for calculating the path lengths in the voxels and the use of variance reduction techniques make the code suitable for the detailed simulation of complex experiments on generic samples in a relatively short time. Examples of applications to X-ray imaging and spectroscopy experiments are discussed

Voxel-based Monte Carlo simulation of X-ray imaging and spectroscopy experiments

Energy Technology Data Exchange (ETDEWEB)

Bottigli, U. [Istituto di Matematica e Fisica dell' Universita di Sassari, via Vienna 2, 07100, Sassari (Italy); Sezione INFN di Cagliari (Italy); Brunetti, A. [Istituto di Matematica e Fisica dell' Universita di Sassari, via Vienna 2, 07100, Sassari (Italy); Golosio, B. [Istituto di Matematica e Fisica dell' Universita di Sassari, via Vienna 2, 07100, Sassari (Italy) and Sezione INFN di Cagliari (Italy)]. E-mail: golosio@uniss.it; Oliva, P. [Istituto di Matematica e Fisica dell' Universita di Sassari, via Vienna 2, 07100, Sassari (Italy); Stumbo, S. [Istituto di Matematica e Fisica dell' Universita di Sassari, via Vienna 2, 07100, Sassari (Italy); Vincze, L. [Department of Chemistry, University of Antwerp (Belgium); Randaccio, P. [Dipartimento di Fisica dell' Universita di Cagliari and Sezione INFN di Cagliari (Italy); Bleuet, P. [European Synchrotron Radiation Facility, Grenoble (France); Simionovici, A. [European Synchrotron Radiation Facility, Grenoble (France); Somogyi, A. [European Synchrotron Radiation Facility, Grenoble (France)

2004-10-08

A Monte Carlo code for the simulation of X-ray imaging and spectroscopy experiments in heterogeneous samples is presented. The energy spectrum, polarization and profile of the incident beam can be defined so that X-ray tube systems as well as synchrotron sources can be simulated. The sample is modeled as a 3D regular grid. The chemical composition and density is given at each point of the grid. Photoelectric absorption, fluorescent emission, elastic and inelastic scattering are included in the simulation. The core of the simulation is a fast routine for the calculation of the path lengths of the photon trajectory intersections with the grid voxels. The voxel representation is particularly useful for samples that cannot be well described by a small set of polyhedra. This is the case of most naturally occurring samples. In such cases, voxel-based simulations are much less expensive in terms of computational cost than simulations on a polygonal representation. The efficient scheme used for calculating the path lengths in the voxels and the use of variance reduction techniques make the code suitable for the detailed simulation of complex experiments on generic samples in a relatively short time. Examples of applications to X-ray imaging and spectroscopy experiments are discussed.

Terahertz spectroscopy and imaging for cultural heritage management: state of art and perspectives

Science.gov (United States)

Catapano, Ilaria; Soldovieri, Francesco

2014-05-01

Non-invasive diagnostic tools able to provide information on the materials and preservation state of artworks are crucial to help conservators, archaeologists and anthropologists to plan and carry out their tasks properly. In this frame, technological solutions exploiting Terahertz (THz) radiation, i.e., working at frequencies ranging from 0.1 to 10 THz, are currently deserving huge attention as complementary techniques to classical analysis methodologies based on electromagnetic radiations from X-rays to mid infrared [1]. The main advantage offered by THz spectroscopy and imaging systems is referred to their capability of providing information useful to determine the construction modality, the history life and the conservation state of artworks as well as to identify previous restoration actions [1,2]. In particular, unlike mid- and near-infrared spectroscopy, which provides fingerprint absorption spectra depending on the intramolecular behavior, THz spectroscopy is related to the structure of the molecules of the investigated object. Hence, it can discriminate, for instance, the different materials mixed in a paint [1,2]. Moreover, THz radiation is able to penetrate several materials which are opaque to both visible and infrared materials, such as varnish, paint, plaster, paper, wood, plastic, and so on. Accordingly, it is useful to detect hidden objects and characterize the inner structure of the artwork under test even in the direction of the depth, while avoiding core drillings. In this frame, THz systems allow us to discriminate different layers of materials present in artworks like paints, to obtain images providing information on the construction technique as well as to discover risk factors affecting the preservation state, such as non-visible cracks, hidden molds and air gaps between the paint layer and underlying structure. Furthermore, adopting a no-ionizing radiation, THz systems offer the not trivial benefit of negligible long term risks to the

Infrared photothermal imaging spectroscopy for detection of trace explosives on surfaces.

Science.gov (United States)

Kendziora, Christopher A; Furstenberg, Robert; Papantonakis, Michael; Nguyen, Viet; Byers, Jeff; Andrew McGill, R

2015-11-01

We are developing a technique for the standoff detection of trace explosives on relevant substrate surfaces using photothermal infrared (IR) imaging spectroscopy (PT-IRIS). This approach leverages one or more compact IR quantum cascade lasers, which are tuned to strong absorption bands in the analytes and directed to illuminate an area on a surface of interest. An IR focal plane array is used to image the surface and detect increases in thermal emission upon laser illumination. The PT-IRIS signal is processed as a hyperspectral image cube comprised of spatial, spectral, and temporal dimensions as vectors within a detection algorithm. The ability to detect trace analytes at standoff on relevant substrates is critical for security applications but is complicated by the optical and thermal analyte/substrate interactions. This manuscript describes a series of PT-IRIS experimental results and analysis for traces of RDX, TNT, ammonium nitrate, and sucrose on steel, polyethylene, glass, and painted steel panels. We demonstrate detection at surface mass loadings comparable with fingerprint depositions ( 10μg/cm2 to 100μg/cm2) from an area corresponding to a single pixel within the thermal image.

Integrative analysis of cardiac function and metabolism in patients with idiopathic hypertrophic cardiomyopathy with H-1 cine MR imaging and P-31 MR spectroscopy

International Nuclear Information System (INIS)

Wagner, S.; Chew, W.M.; Semelka, R.; Tomei, E.; Caputo, G.; O'Sullivan, M.; Chatterjee, K.; Parmley, W.W.; Wolfe, C.L.; Higgins, C.B.

1989-01-01

The purpose of the study was to use MR imaging and P-31 spectroscopy for the functional and metabolic characterization of patients with hypertrophic cardiomyopathy (HCM). Nine patients with HCM underwent combined P-31 spectroscopy (one-dimensional chemical shift imaging) and MR imaging at 1.5 T. MR imaging localized the distribution of ventricular hypertrophy and cine MR imaging quantitated cardiac volumes, contractility, and left ventricular mass. The phosphodiester/phosphocreatine ratio (PDE/PCr) in six HCM patients was not different from normal, but in three patients it was significantly (P <.01) higher. This finding could not be attributed to contractible abnormalities, the distribution of hypertrophy, or the left ventricular mass. The abnormal PDE/PCr ratio was found only in patients with echocardiographic findings of resting left ventricular outflow obstruction but was not associated with severity or distribution of hypertrophy. The study shows the use of combined MR imaging and MR spectroscopy to characterize HCM and possibly to identify abnormal myocardial tissue

Wide-field high-performance geosynchronous imaging

International Nuclear Information System (INIS)

Wood, H. John; Jenstrom, Del; Wilson, Mark; Hinkal, Sanford; Kirchman, Frank

1998-01-01

The NASA Mission to Planet Earth (MTPE) Program and the National Oceanographic and Atmospheric Administration (NOAA) are sponsoring the Advanced Geosynchronous Studies (AGS) to develop technologies and system concepts for Earth observation from geosynchronous orbit. This series of studies is intended to benefit both MTPE science and the NOAA GOES Program. Within the AGS program, advanced imager trade studies have investigated two candidate concepts for near-term advanced geosynchronous imagers. One concept uses a scan mirror to direct the line of sight from a 3-axis stabilized platform. Another eliminates the need for a scan mirror by using an agile spacecraft bus to scan the entire instrument. The purpose of this paper is to discuss the optical design trades and system issues encountered in evaluating the two scanning approaches. The imager design started with a look at first principles: what is the most efficient way to image the Earth in those numerous spectral bands of interest to MTPE scientists and NOAA weather forecasters. Optical design trades included rotating filter wheels and dispersive grating instruments. The design converged on a bandpass filter instrument using four focal planes to cover the spectral range 0.45 to 13.0 micrometers. The first imager design uses a small agile spacecraft supporting an afocal optical telescope. Dichroic beamsplitters feed refractive objectives to four focal planes. The detectors are a series of long linear and rectangular arrays which are scanned in a raster fashion over the 17 degree Earth image. The use of the spacecraft attitude control system to raster the imager field-of-view (FOV) back and forth over the Earth eliminates the need for a scan mirror. However, the price paid is significant energy and time required to reverse the spacecraft slew motions at the end of each scan line. Hence, it is desired to minimize the number of scan lines needed to cover the full Earth disk. This desire, coupled with the ground

Tip-Enhanced Nano-Spectroscopy, Imaging, and Control: From Single Molecules to van der Waals Materials

Science.gov (United States)

Park, Kyoung-Duck

Photon-induced phenomena in molecules and other materials play a significant role in device applications as well as understanding their physical properties. While a range of device applications using organic and inorganic molecules and soft and hard materials have led striking developments in modern technologies, using bulk systems has reached the limit in their functions, performance, and regarding application range. Recently, low-dimensional systems have emerged as appealing resources for the advanced technologies based on their significantly improved functions and properties. Hence, understanding light-matter interactions at their natural length scale is of fundamental significance, in addition to the next generation device applications. This thesis demonstrates a range of new functions and behaviors of low-dimensional materials revealed and controlled by the advanced tip-enhanced near-field spectroscopy and imaging techniques exceeding the current instrumental limits. To understand the behaviors of zero-dimensional (0D) molecular systems in interacting environments, we explore new regimes in tip-enhanced Raman spectroscopy (TERS) and scanning near-field optical microscopy (SNOM), revealing the fundamental nature of single-molecule dynamics and nanoscale spatial heterogeneity of biomolecules on the cell membranes. To gain insight into intramolecular properties and dynamic processes of single molecules, we use TERS at cryogenic temperatures. From temperature-dependent line narrowing and splitting, we investigate and quantify ultrafast vibrational dephasing, intramolecular coupling, and conformational heterogeneity. Through correlation analysis of fluctuations of individual modes, we observe rotational motion and spectral fluctuations of single-molecule. We extend single-molecule spectroscopy study into in situ nano-biomolecular imaging of cancer cells by developing in-liquid SNOM. We use a new mechanical resonance control, achieving a high-Q force sensing of the

Intracellular localization and dynamics of Hypericin loaded PLLA nanocarriers by image correlation spectroscopy.

Science.gov (United States)

Penjweini, Rozhin; Deville, Sarah; D'Olieslaeger, Lien; Berden, Mandy; Ameloot, Marcel; Ethirajan, Anitha

2015-11-28

The study of cell-nanoparticle interactions is an important aspect for understanding drug delivery using nanocarriers. In this regard, advances in fluorescence based microscopy are useful for the investigation of temporal and spatial behavior of nanoparticles (NPs) within the intracellular environment. In this work, we focus on the delivery of the naturally-occurring hydrophobic photosensitizer Hypericin in human lung carcinoma A549 cells by using biodegradable poly L-lactic acid NPs. For the first time, Hypericin containing NPs are prepared by combining the miniemulsion technique with the solvent evaporation method. This approach yields an efficient loading of the NPs with Hypericin and allows for additional cargo molecules. To monitor the release of Hypercin from the NPs, an additional fluorescent lipophilic dye Coumarin-6 is incorporated in the NPs. Temporal and spatiotemporal image correlation spectroscopy is used to determine the fate of the NPs carrying the potential cargo. Both directed and non-directed motions are detected. By using image cross-correlation spectroscopy and specific fluorescent labeling of endosomes, lysosomes and mitochondria, the dynamics of the cargo loaded NPs in association with the organelles is studied. Copyright © 2015 Elsevier B.V. All rights reserved.

SU-C-209-05: Monte Carlo Model of a Prototype Backscatter X-Ray (BSX) Imager for Projective and Selective Object-Plane Imaging

International Nuclear Information System (INIS)

Rolison, L; Samant, S; Baciak, J; Jordan, K

2016-01-01

Purpose: To develop a Monte Carlo N-Particle (MCNP) model for the validation of a prototype backscatter x-ray (BSX) imager, and optimization of BSX technology for medical applications, including selective object-plane imaging. Methods: BSX is an emerging technology that represents an alternative to conventional computed tomography (CT) and projective digital radiography (DR). It employs detectors located on the same side as the incident x-ray source, making use of backscatter and avoiding ring geometry to enclose the imaging object. Current BSX imagers suffer from low spatial resolution. A MCNP model was designed to replicate a BSX prototype used for flaw detection in industrial materials. This prototype consisted of a 1.5mm diameter 60kVp pencil beam surrounded by a ring of four 5.0cm diameter NaI scintillation detectors. The imaging phantom consisted of a 2.9cm thick aluminum plate with five 0.6cm diameter holes drilled halfway. The experimental image was created using a raster scanning motion (in 1.5mm increments). Results: A qualitative comparison between the physical and simulated images showed very good agreement with 1.5mm spatial resolution in plane perpendicular to incident x-ray beam. The MCNP model developed the concept of radiography by selective plane detection (RSPD) for BSX, whereby specific object planes can be imaged by varying kVp. 10keV increments in mean x-ray energy yielded 4mm thick slice resolution in the phantom. Image resolution in the MCNP model can be further increased by increasing the number of detectors, and decreasing raster step size. Conclusion: MCNP modelling was used to validate a prototype BSX imager and introduce the RSPD concept, allowing for selective object-plane imaging. There was very good visual agreement between the experimental and MCNP imaging. Beyond optimizing system parameters for the existing prototype, new geometries can be investigated for volumetric image acquisition in medical applications. This material is

SU-C-209-05: Monte Carlo Model of a Prototype Backscatter X-Ray (BSX) Imager for Projective and Selective Object-Plane Imaging

Energy Technology Data Exchange (ETDEWEB)

Rolison, L; Samant, S; Baciak, J; Jordan, K [University of Florida, Gainesville, FL (United States)

2016-06-15

Purpose: To develop a Monte Carlo N-Particle (MCNP) model for the validation of a prototype backscatter x-ray (BSX) imager, and optimization of BSX technology for medical applications, including selective object-plane imaging. Methods: BSX is an emerging technology that represents an alternative to conventional computed tomography (CT) and projective digital radiography (DR). It employs detectors located on the same side as the incident x-ray source, making use of backscatter and avoiding ring geometry to enclose the imaging object. Current BSX imagers suffer from low spatial resolution. A MCNP model was designed to replicate a BSX prototype used for flaw detection in industrial materials. This prototype consisted of a 1.5mm diameter 60kVp pencil beam surrounded by a ring of four 5.0cm diameter NaI scintillation detectors. The imaging phantom consisted of a 2.9cm thick aluminum plate with five 0.6cm diameter holes drilled halfway. The experimental image was created using a raster scanning motion (in 1.5mm increments). Results: A qualitative comparison between the physical and simulated images showed very good agreement with 1.5mm spatial resolution in plane perpendicular to incident x-ray beam. The MCNP model developed the concept of radiography by selective plane detection (RSPD) for BSX, whereby specific object planes can be imaged by varying kVp. 10keV increments in mean x-ray energy yielded 4mm thick slice resolution in the phantom. Image resolution in the MCNP model can be further increased by increasing the number of detectors, and decreasing raster step size. Conclusion: MCNP modelling was used to validate a prototype BSX imager and introduce the RSPD concept, allowing for selective object-plane imaging. There was very good visual agreement between the experimental and MCNP imaging. Beyond optimizing system parameters for the existing prototype, new geometries can be investigated for volumetric image acquisition in medical applications. This material is

Slow photoelectron imaging spectroscopy of CCO- and CCS-.

Science.gov (United States)

Garand, Etienne; Yacovitch, Tara I; Neumark, Daniel M

2008-08-21

High-resolution photodetachment spectra of CCO(-) and CCS(-) using slow photoelectron velocity-map imaging spectroscopy are reported. Well-resolved transitions to the neutral X (3)Sigma(-), a (1)Delta, b (1)Sigma(+), and A (3)Pi states are seen for both species. The electron affinities of CCO and CCS are determined to be 2.3107+/-0.0006 and 2.7475+/-0.0006 eV, respectively, and precise term energies for the a (1)Delta, b (1)Sigma(+), and A (3)Pi excited states are also determined. The two low-lying singlet states of CCS are observed for the first time, as are several vibronic transitions within the four bands. Analysis of hot bands finds the spin-orbit orbit splitting in the X (2)Pi ground state of CCO(-) and CCS(-) to be 61 and 195 cm(-1), respectively.

SOLARNET & LAIME: Imaging & Spectroscopy in the Far Ultraviolet

Science.gov (United States)

Damé, Luc; Koutchmy, Serge

SOLARNET is a medium size high resolution solar physics mission proposed to CNES and ESA for a new start in 2007 and a possible launch in 2012 (CNES) or later (ESA Cosmic Vision framework: 2015-2016). Partnerships with India and China are under discussion, and several European contributions are considered. At the center of the SOLARNET mission is a 3-telescope interferometer of 1 meter baseline capable to provide 40 times the best ever spatial resolution achieved in Space with previous, current or even planned solar missions: 20 mas - 20 km on the Sun in the FUV. The interferometer is associated to an on-axis Subtractive Double Monochromator coupled to an Imaging Fourier Transform Spectrometer capable of high spectral (0.01 nm) and high temporal resolutions (50 ms) on a field of view of 40 arcsec and covering the FUV and UV spectral domains (from 117.5 to 400 nm). This will allow to access process scales of magnetic reconnection, dissipation, emerging flux and much more, from the chromosphere to the low corona with emphasis on the transition zone where the magnetic confinement is expected to be maximum. A whole new chapter of the physics of solar magnetic field structuring, evolution and mapping from the photosphere to the high atmosphere will be opened. The interferometer is completed by instruments providing larger field of view and higher temperature (EUV-XUV coronal imaging & spectroscopy) to define the context and extension of the solar phenomena. The 3-telescope interferometer design results of an extensive laboratory demonstration program of interferometric imaging of extended objects. We will review the scientific program of SOLARNET, describe the interferometer concept and design, present the results of the breadboard and give a short overview of the mission aspects. In a different category, LAIME, the Lyman Alpha Imaging-Monitor Experiment, is a remarkably simple (no mechanisms) and compact full Sun imager to be flown with TESIS on the CORONAS

Neutron-induced damage evolution under Beam Raster Scanner conditions for IFMIF

International Nuclear Information System (INIS)

Mota, Fernando; Ortiz, Christophe J.; Ibarra, Angel; Vila, Rafael

2011-01-01

The formation and evolution of defects in materials irradiated with a homogeneous neutron source and with the Beam Raster Scanner (BRS) solution was investigated. The intensity neutron source fluctuations inherent to the BRS system were determined using the neutron transport McDeLicious code. Defects generated during irradiation were calculated using the binary collision approximation MARLOWE code, using the primary knock-on atom (PKA) energy spectrum resulting from neutron interactions with the material. In order to predict the evolution of defects during irradiation, a Rate Theory model based on ab initio parameters was developed. Our model accounts for the migration of mobile defects, the formation of clusters and their recombination. As an example, we investigated defect evolution in Fe irradiated at room temperature in both beam configurations. Simulation results clearly indicate that the defect evolution expected in the BRS configuration is nearly the same as the one expected in a homogeneous irradiation system.

Customized altitude-azimuth mount for a raster-scanning Fourier transform spectrometer

Science.gov (United States)

Durrenberger, Jed E.; Gutman, William M.; Gammill, Troy D.; Grover, Dennis H.

1996-10-01

Applications of the Army Research Laboratory Mobile Atmospheric Spectrometer Remote Sensing Rover required development of a customized computer-controlled mount to satisfy a variety of requirements within a limited budget. The payload was designed to operate atop a military electronics shelter mounted on a 4-wheel drive truck to be above most atmospheric ground turbulence. Pointing orientation in altitude is limited by constraints imposed by use of a liquid nitrogen detector Dewar in the spectrometer. Stepper motor drives and control system are compatible with existing custom software used with other instrumentation for controlled incremental raster stepping. The altitude axis passes close to the center of gravity of the complete payload to minimize load eccentricity and drive torque requirements. Dovetail fixture mounting enables quick service and fine adjustment of balance to minimize stepper/gearbox drive backlash through the limited orientation range in altitude. Initial applications to characterization of remote gas plumes have been successful.

MR diffusion imaging and 1H spectroscopy in a child with medulloblastoma: A case report

Energy Technology Data Exchange (ETDEWEB)

Wilke, M. [Max-Planck-Institute of Psychiatry, Muenchen (Germany). NMR Study Group; Eidenschink, A.; Mueller-Weihrich, S. [Technical Univ. of Muenchen, (Germany). Childrens' Hospital; Auer, D.P. [Max-Planck-Institute of Psychiatry, Muenchen (Germany). NMR Study Group

2000-01-01

We report on a child with a metastasising medulloblastoma which was assessed by MR diffusion imaging and 1H MR spectroscopy (MRS). Reduced mean apparent diffusion coefficients and a high amount of taurine could be demonstrated. This is the first reported case of high taurine in medulloblastoma in vivo and confirms earlier in vitro findings. It is suggested that the changes on diffusion imaging, possibly reflecting the small-cell histology of the tumour and high taurine in MRS, are indicative of medulloblastoma.

MR diffusion imaging and 1H spectroscopy in a child with medulloblastoma: A case report

International Nuclear Information System (INIS)

Wilke, M.; Eidenschink, A.; Mueller-Weihrich, S.; Auer, D.P.

2000-01-01

We report on a child with a metastasising medulloblastoma which was assessed by MR diffusion imaging and 1H MR spectroscopy (MRS). Reduced mean apparent diffusion coefficients and a high amount of taurine could be demonstrated. This is the first reported case of high taurine in medulloblastoma in vivo and confirms earlier in vitro findings. It is suggested that the changes on diffusion imaging, possibly reflecting the small-cell histology of the tumour and high taurine in MRS, are indicative of medulloblastoma

An instrument control and data analysis program for NMR imaging and spectroscopy

International Nuclear Information System (INIS)

Roos, M.S.; Mushlin, R.A.; Veklerov, E.; Port, J.D.; Ladd, C.; Harrison, C.G.

1988-01-01

We describe a software environment created to support real-time instrument control and signal acquisition as well as array-processor based signal and image processing in up to five dimensions. The environment is configured for NMR imaging and in vivo spectroscopy. It is designed to provide flexible tools for implementing novel NMR experiments in the research laboratory. Data acquisition and processing operations are programmed in macros which are loaded in assembled from to minimize instruction overhead. Data arrays are dynamically allocated for efficient use of memory and can be mapped directly into disk files. The command set includes primitives for real-time control of data acquisition, scalar arithmetic, string manipulation, branching, a file system and vector operations carried out by an array processor. 6 figs

A Quantitative Diffuse Reflectance Imaging (QDRI System for Comprehensive Surveillance of the Morphological Landscape in Breast Tumor Margins.

Directory of Open Access Journals (Sweden)

Brandon S Nichols

Full Text Available In an ongoing effort to address the clear clinical unmet needs surrounding breast conserving surgery (BCS, our group has developed a next-generation multiplexed optical-fiber-based tool to assess breast tumor margin status during initial surgeries. Specifically detailed in this work is the performance and clinical validation of a research-grade intra-operative tool for margin assessment based on diffuse optical spectroscopy. Previous work published by our group has illustrated the proof-of-concept generations of this device; here we incorporate a highly optimized quantitative diffuse reflectance imaging (QDRI system utilizing a wide-field (imaging area = 17 cm(2 49-channel multiplexed fiber optic probe, a custom raster-scanning imaging platform, a custom dual-channel white LED source, and an astronomy grade imaging CCD and spectrograph. The system signal to noise ratio (SNR was found to be greater than 40 dB for all channels. Optical property estimation error was found to be less than 10%, on average, over a wide range of absorption (μa = 0-8.9 cm(-1 and scattering (μs' = 7.0-9.7 cm(-1 coefficients. Very low inter-channel and CCD crosstalk was observed (2% max when used on turbid media (including breast tissue. A raster-scanning mechanism was developed to achieve sub-pixel resolution and was found to be optimally performed at an upsample factor of 8, affording 0.75 mm spatially resolved diffuse reflectance images (λ = 450-600 nm of an entire margin (area = 17 cm(2 in 13.8 minutes (1.23 cm(2/min. Moreover, controlled pressure application at the probe-tissue interface afforded by the imaging platform reduces repeated scan variability, providing <1% variation across repeated scans of clinical specimens. We demonstrate the clinical utility of this device through a pilot 20-patient study of high-resolution optical parameter maps of the ratio of the β-carotene concentration to the reduced scattering coefficient. An empirical cumulative

Graphic filter library implemented in CUDA language

OpenAIRE

Peroutková, Hedvika

2009-01-01

This thesis deals with the problem of reducing computation time of raster image processing by parallel computing on graphics processing unit. Raster image processing thereby refers to the application of graphic filters, which can be applied in sequence with different settings. This thesis evaluates the suitability of using parallelization on graphic card for raster image adjustments based on multicriterial choice. Filters are implemented for graphics processing unit in CUDA language. Opacity ...

A novel non-imaging optics based Raman spectroscopy device for transdermal blood analyte measurement

Directory of Open Access Journals (Sweden)

Chae-Ryon Kong

2011-09-01

Full Text Available Due to its high chemical specificity, Raman spectroscopy has been considered to be a promising technique for non-invasive disease diagnosis. However, during Raman excitation, less than one out of a million photons undergo spontaneous Raman scattering and such weakness in Raman scattered light often require highly efficient collection of Raman scattered light for the analysis of biological tissues. We present a novel non-imaging optics based portable Raman spectroscopy instrument designed for enhanced light collection. While the instrument was demonstrated on transdermal blood glucose measurement, it can also be used for detection of other clinically relevant blood analytes such as creatinine, urea and cholesterol, as well as other tissue diagnosis applications. For enhanced light collection, a non-imaging optical element called compound hyperbolic concentrator (CHC converts the wide angular range of scattered photons (numerical aperture (NA of 1.0 from the tissue into a limited range of angles accommodated by the acceptance angles of the collection system (e.g., an optical fiber with NA of 0.22. A CHC enables collimation of scattered light directions to within extremely narrow range of angles while also maintaining practical physical dimensions. Such a design allows for the development of a very efficient and compact spectroscopy system for analyzing highly scattering biological tissues. Using the CHC-based portable Raman instrument in a clinical research setting, we demonstrate successful transdermal blood glucose predictions in human subjects undergoing oral glucose tolerance tests.

Imaging spectroscopy of the terrestrial environment; Proceedings of the Meeting, Orlando, FL, Apr. 16, 17, 1990

Science.gov (United States)

Vane, Gregg

1990-09-01

Topics presented include the evolution of the Airborne Visible/Infrared Imaging Spectrometer flight and ground data processing system, direct mineral identification with Geoscan Mk II Advanced Multispectral Scanner, a new approach to imaging spectroscopy, and a linear-wedge spectrometer. Also presented are the effects of moisture content and chemical composition on the near-infrared spectra of forest foliage, change detection in vegetation using 1989 AVIRIS data, and the inversion of high-spectral-resolution data.

Examination of human brain tumors in situ with image-localized H-1 MR spectroscopy

International Nuclear Information System (INIS)

Luyten, P.R.; Segebarth, C.; Baleriaux, D.; Den Hollander, J.A.

1987-01-01

Human brain tumors were examined in situ by combined imaging and H-1 MR spectroscopy at 1.5 T. Water-suppressed localized H-1 MR spectra obtained from the brains of normal volunteers show resonances from lactate, N-acetyl aspartate (NAA), creatine, and choline. Several patients suffering from different brain tumors were examined, showing spectral changes in the region of 0.5-1.5 ppm; spectral editing showed that these changes were not due to lactic acid, but to lipid signals. The NAA signal was decreased in the tumors as compared with normal brain. This study shows that H-1 MR spectroscopy can monitor submillimolar changes in chemical composition of human brain tumors in situ

Functional and ophthalmoscopic observations in human laser accident cases using scanning-laser ophthalmoscopy

Science.gov (United States)

Zwick, Harry; Lund, David J.; Gagliano, Donald A.; Stuck, Bruce E.

1994-06-01

A scanning laser ophthalmoscope (SLO) equipped with an acousto- optical modulator (ACM) was used to make focal acuity and contrast sensitivity measurements in individuals with macular damage. The depth of modulation achieved by the ACM was determined by imaging the SLO raster pattern onto a Pulnix TM 745 video camera and evaluating the intensity distribution with a Big Sky BVA10 beam view analyzer. Contrast levels remained approximately constant over the entire range of SLO input raster power settings. A delta Technologies image processing system produced Landolt ring test stimuli at the center of the raster pattern. Contrast thresholds were determined at various retinal locations by having subjects fixate a specific location on a fixed grid imaged on the raster pattern. This procedure insured that the test stimuli were always imaged in the center of the raster pattern thereby avoiding peripheral variations in the raster pattern intensity distribution. Measurements of contrast sensitivity where focal test targets fell within the macular damage area demonstrated elevated contrast thresholds relative to retinal locations where focal test targets evaluated the border regions between normal and pathological retina.

Method of composing two-dimensional scanned spectra observed by the New Vacuum Solar Telescope

Science.gov (United States)

Cai, Yun-Fang; Xu, Zhi; Chen, Yu-Chao; Xu, Jun; Li, Zheng-Gang; Fu, Yu; Ji, Kai-Fan

2018-04-01

In this paper we illustrate the technique used by the New Vacuum Solar Telescope (NVST) to increase the spatial resolution of two-dimensional (2D) solar spectroscopy observations involving two dimensions of space and one of wavelength. Without an image stabilizer at the NVST, large scale wobble motion is present during the spatial scanning, whose instantaneous amplitude can reach 1.3″ due to the Earth’s atmosphere and the precision of the telescope guiding system, and seriously decreases the spatial resolution of 2D spatial maps composed with scanned spectra. We make the following effort to resolve this problem: the imaging system (e.g., the TiO-band) is used to record and detect the displacement vectors of solar image motion during the raster scan, in both the slit and scanning directions. The spectral data (e.g., the Hα line) which are originally obtained in time sequence are corrected and re-arranged in space according to those displacement vectors. Raster scans are carried out in several active regions with different seeing conditions (two rasters are illustrated in this paper). Given a certain spatial sampling and temporal resolution, the spatial resolution of the composed 2D map could be close to that of the slit-jaw image. The resulting quality after correction is quantitatively evaluated with two methods. A physical quantity, such as the line-of-sight velocities in multiple layers of the solar atmosphere, is also inferred from the re-arranged spectrum, demonstrating the advantage of this technique.

Intracranial metastatic mucinous adrenocarcinoma with characteristic features on diffusion-weighted imaging and in vivo magnetic resonance spectroscopy

International Nuclear Information System (INIS)

Guruprasad, Ashwathnarayan S.; Chandrashekar, Hoskote S.; Jayakumar, Peruvumba N.; Srikanth, Subbamma G.; Shankar, Susarla K.

2004-01-01

Intracranial abscesses and metastases are common lesions that might not be differentiated on routine MR I alone. In vivo proton spectroscopy and diffusion-weighted imaging have been used as complementary investigations for improved tissue characterization. In the present report we illustrate the role of mucin and its contribution to signal characteristics on diffusion-weighted imaging in a metastatic mucinous adenocarcinoma Copyright (2004) Blackwell Publishing Asia Pty Ltd

Atomic force microscopy deep trench and sidewall imaging with an optical fiber probe

Energy Technology Data Exchange (ETDEWEB)

Xie, Hui, E-mail: xiehui@hit.edu.cn; Hussain, Danish; Yang, Feng [The State Key Laboratory of Robotics and Systems, Harbin Institute of Technology, 2 Yikuang, 150080 Harbin (China); Sun, Lining [The State Key Laboratory of Robotics and Systems, Harbin Institute of Technology, 2 Yikuang, 150080 Harbin (China); Robotics and Microsystems Center, Soochow University, 215021 Suzhou (China)

2014-12-15

We report a method to measure critical dimensions of micro- and nanostructures using the atomic force microscope (AFM) with an optical fiber probe (OFP). This method is capable of scanning narrow and deep trenches due to the long and thin OFP tip, as well as imaging of steep sidewalls with unique profiling possibilities by laterally tilting the OFP without any modifications of the optical lever. A switch control scheme is developed to measure the sidewall angle by flexibly transferring feedback control between the Z- and Y-axis, for a serial scan of the horizontal surface (raster scan on XY-plane) and sidewall (raster scan on the YZ-plane), respectively. In experiments, a deep trench with tapered walls (243.5 μm deep) and a microhole (about 14.9 μm deep) have been imaged with the orthogonally aligned OFP, as well as a silicon sidewall (fabricated by deep reactive ion etching) has been characterized with the tilted OFP. Moreover, the sidewall angle of TGZ3 (AFM calibration grating) was accurately measured using the switchable scan method.

X-ray image processing software for computing object size and object location coordinates from acquired optical and x-ray images

International Nuclear Information System (INIS)

Tiwari, Akash; Tiwari, Shyam Sunder; Tiwari, Railesha; Panday, Lokesh; Panday, Jeet; Suri, Nitin

2004-01-01

X-ray and Visible image data processing software has been developed in Visual Basic for real time online and offline image information processing for NDT and Medical Applications. Software computes two dimension image size parameters from its sharp boundary lines by raster scanning the image contrast data. Code accepts bit map image data and hunts for multiple tumors of different sizes that may be present in the image definition and then computes size of each tumor and locates its approximate center for registering its location coordinates. Presence of foreign metal and glass balls industrial product such as chocolate and other food items imaged out using x-ray imaging technique are detected by the software and their size and position co-ordinates are computed by the software. Paper discusses ways and means to compute size and coordinated of air bubble like objects present in the x-ray and optical images and their multiple existences in image of interest. (author)

Study of carbonate concretions using imaging spectroscopy in the Frontier Formation, Wyoming

Science.gov (United States)

de Linaje, Virginia Alonso; Khan, Shuhab D.; Bhattacharya, Janok

2018-04-01

Imaging spectroscopy is applied to study diagenetic processes of the Wall Creek Member of the Cretaceous Frontier Formation, Wyoming. Visible Near-Infrared and Shortwave-Infrared hyperspectral cameras were used to scan near vertical and well-exposed outcrop walls to analyze lateral and vertical geochemical variations. Reflectance spectra were analyzed and compared with high-resolution laboratory spectral and hyperspectral imaging data. Spectral Angle Mapper (SAM) and Mixture Tuned Matched Filtering (MTMF) classification algorithms were applied to quantify facies and mineral abundances in the Frontier Formation. MTMF is the most effective and reliable technique when studying spectrally similar materials. Classification results show that calcite cement in concretions associated with the channel facies is homogeneously distributed, whereas the bar facies was shown to be interbedded with layers of non-calcite-cemented sandstone.

In Situ Visible to Short Wavelength Imaging Spectroscopy with the Ultra Compact Imaging Spectrometer (UCIS): Case Studies from the Mars Exploration Rovers

Science.gov (United States)

Blaney, D.; Mouroulis, P.; Green, R.; Rodriguez, J.; Sellar, G.; Van Gorp, B.; Wilson, D.

2011-01-01

In Situ imaging spectroscopy provides a way to address complex questions of geological evolution for both aqueous and igneous processes by mapping mineral composition at the spatial scale of rocks and outcrops. Examination of locations studied by the Mars Exploration Rovers Spirit and Opportunity can provide examples of the potential utility and define the needed measurement requirements. A compact instrument is needed to be able to adequately address these science questions from a rover platform. The Ultra Compact Imaging Spectrometer (UCIS) is an instrument designed to address the science need and implementation constraints.

Prebiopsy magnetic resonance spectroscopy and imaging in the diagnosis of prostate cancer

International Nuclear Information System (INIS)

Kumar, V.; Jagannathan, N.R.; Thulkar, S.; Kumar, R.

2012-01-01

Existing screening investigations for the diagnosis of early prostate cancer lack specificity, resulting in a high negative biopsy rate. There is increasing interest in the use of various magnetic resonance methods for improving the yield of transrectal ultrasound-guided biopsies of the prostate in men suspected to have prostate cancer. We review the existing status of such investigations. A literature search was carried out using the Pubmed database to identify articles related to magnetic resonance methods for diagnosing prostate cancer. References from these articles were also extracted and reviewed. Recent studies have focused on prebiopsy magnetic resonance investigations using conventional magnetic resonance imaging, dynamic contrast enhanced magnetic resonance imaging, diffusion weighted magnetic resonance imaging, magnetization transfer imaging and magnetic resonance spectroscopy of the prostate. This marks a shift from the earlier strategy of carrying out postbiopsy magnetic resonance investigations. Prebiopsy magnetic resonance investigations has been useful in identifying patients who are more likely to have a biopsy positive for malignancy. Prebiopsy magnetic resonance investigations has a potential role in increasing specificity of screening for early prostate cancer. It has a role in the targeting of biopsy sites, avoiding unnecessary biopsies and predicting the outcome of biopsies. (author)

Terahertz imaging and spectroscopy based on hot electron bolometer (HEB) heterodyne detection

Science.gov (United States)

Gerecht, Eyal; You, Lixing

2008-02-01

Imaging and spectroscopy at terahertz frequencies have great potential for healthcare, plasma diagnostics, and homeland security applications. Terahertz frequencies correspond to energy level transitions of important molecules in biology and astrophysics. Terahertz radiation (T-rays) can penetrate clothing and, to some extent, can also penetrate biological materials. Because of their shorter wavelengths, they offer higher spatial resolution than do microwaves or millimeter waves. We are developing hot electron bolometer (HEB) mixer receivers for heterodyne detection at terahertz frequencies. HEB detectors provide unprecedented sensitivity and spectral resolution at terahertz frequencies. We describe the development of a two-pixel focal plane array (FPA) based on HEB technology. Furthermore, we have demonstrated a fully automated, two-dimensional scanning, passive imaging system based on our HEB technology operating at 0.85 THz. Our high spectral resolution terahertz imager has a total system noise equivalent temperature difference (NEΔT) value of better than 0.5 K and a spatial resolution of a few millimeters. HEB technology is becoming the basis for advanced terahertz imaging and spectroscopic technologies for the study of biological and chemical agents over the entire terahertz spectrum.

Mapping Pollution Plumes in Areas Impacted by Hurricane Katrina With Imaging Spectroscopy

Science.gov (United States)

Swayze, G. A.; Furlong, E. T.; Livo, K. E.

2007-12-01

New Orleans endured flooding on a massive scale subsequent to Hurricane Katrina in August of 2005. Contaminant plumes were noticeable in satellite images of the city in the days following flooding. Many of these plumes were caused by oil, gasoline, and diesel that leaked from inundated vehicles, gas stations, and refineries. News reports also suggested that the flood waters were contaminated with sewage from breached pipes. Effluent plumes such as these pose a potential health hazard to humans and wildlife in the aftermath of hurricanes and potentially from other catastrophic events (e.g., earthquakes, shipping accidents, chemical spills, and terrorist attacks). While the extent of effluent plumes can be gauged with synthetic aperture radar and broad- band visible-infrared images (Rykhus, 2005) (e.g., Radarsat and Landsat ETM+) the composition of the plumes could not be determined. These instruments lack the spectral resolution necessary to do chemical identification. Imaging spectroscopy may help solve this problem. Over 60 flight lines of NASA Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data were collected over New Orleans, the Mississippi Delta, and the Gulf Coast from one to two weeks after Katrina while the contaminated water was being pumped out of flooded areas. These data provide a unique opportunity to test if imaging spectrometer data can be used to identify the chemistry of these flood-related plumes. Many chemicals have unique spectral signatures in the ultraviolet to near-infrared range (0.2 - 2.5 microns) that can be used as fingerprints for their identification. We are particularly interested in detecting thin films of oil, gasoline, diesel, and raw sewage suspended on or in water. If these materials can be successfully differentiated in the lab then we will use spectral-shape matching algorithms to look for their spectral signatures in the AVIRIS data collected over New Orleans and other areas impacted by Katrina. If imaging spectroscopy

Influence of Layer Thickness and Raster Angle on the Mechanical Properties of 3D-Printed PEEK and a Comparative Mechanical Study between PEEK and ABS.

Science.gov (United States)

Wu, Wenzheng; Geng, Peng; Li, Guiwei; Zhao, Di; Zhang, Haibo; Zhao, Ji

2015-09-01

Fused deposition modeling (FDM) is a rapidly growing 3D printing technology. However, printing materials are restricted to acrylonitrile butadiene styrene (ABS) or poly (lactic acid) (PLA) in most Fused deposition modeling (FDM) equipment. Here, we report on a new high-performance printing material, polyether-ether-ketone (PEEK), which could surmount these shortcomings. This paper is devoted to studying the influence of layer thickness and raster angle on the mechanical properties of 3D-printed PEEK. Samples with three different layer thicknesses (200, 300 and 400 μm) and raster angles (0°, 30° and 45°) were built using a polyether-ether-ketone (PEEK) 3D printing system and their tensile, compressive and bending strengths were tested. The optimal mechanical properties of polyether-ether-ketone (PEEK) samples were found at a layer thickness of 300 μm and a raster angle of 0°. To evaluate the printing performance of polyether-ether-ketone (PEEK) samples, a comparison was made between the mechanical properties of 3D-printed polyether-ether-ketone (PEEK) and acrylonitrile butadiene styrene (ABS) parts. The results suggest that the average tensile strengths of polyether-ether-ketone (PEEK) parts were 108% higher than those for acrylonitrile butadiene styrene (ABS), and compressive strengths were 114% and bending strengths were 115%. However, the modulus of elasticity for both materials was similar. These results indicate that the mechanical properties of 3D-printed polyether-ether-ketone (PEEK) are superior to 3D-printed ABS.

Photoacoustic imaging and spectroscopy

CERN Document Server

Wang, Lihong

2009-01-01

Photoacoustics promises to revolutionize medical imaging and may well make as dramatic a contribution to modern medicine as the discovery of the x-ray itself once did. Combining electromagnetic and ultrasonic waves synergistically, photoacoustics can provide deep speckle-free imaging with high electromagnetic contrast at high ultrasonic resolution and without any health risk. While photoacoustic imaging is probably the fastest growing biomedical imaging technology, this book is the first comprehensive volume in this emerging field covering both the physics and the remarkable noninvasive applic

The MIND PALACE: A Multi-Spectral Imaging and Spectroscopy Database for Planetary Science

Science.gov (United States)

Eshelman, E.; Doloboff, I.; Hara, E. K.; Uckert, K.; Sapers, H. M.; Abbey, W.; Beegle, L. W.; Bhartia, R.

2017-12-01

The Multi-Instrument Database (MIND) is the web-based home to a well-characterized set of analytical data collected by a suite of deep-UV fluorescence/Raman instruments built at the Jet Propulsion Laboratory (JPL). Samples derive from a growing body of planetary surface analogs, mineral and microbial standards, meteorites, spacecraft materials, and other astrobiologically relevant materials. In addition to deep-UV spectroscopy, datasets stored in MIND are obtained from a variety of analytical techniques obtained over multiple spatial and spectral scales including electron microscopy, optical microscopy, infrared spectroscopy, X-ray fluorescence, and direct fluorescence imaging. Multivariate statistical analysis techniques, primarily Principal Component Analysis (PCA), are used to guide interpretation of these large multi-analytical spectral datasets. Spatial co-referencing of integrated spectral/visual maps is performed using QGIS (geographic information system software). Georeferencing techniques transform individual instrument data maps into a layered co-registered data cube for analysis across spectral and spatial scales. The body of data in MIND is intended to serve as a permanent, reliable, and expanding database of deep-UV spectroscopy datasets generated by this unique suite of JPL-based instruments on samples of broad planetary science interest.

Research of the effectiveness of parallel multithreaded realizations of interpolation methods for scaling raster images

Science.gov (United States)

Vnukov, A. A.; Shershnev, M. B.

2018-01-01

The aim of this work is the software implementation of three image scaling algorithms using parallel computations, as well as the development of an application with a graphical user interface for the Windows operating system to demonstrate the operation of algorithms and to study the relationship between system performance, algorithm execution time and the degree of parallelization of computations. Three methods of interpolation were studied, formalized and adapted to scale images. The result of the work is a program for scaling images by different methods. Comparison of the quality of scaling by different methods is given.

A SmallSat Approach for Global Imaging Spectroscopy of the Earth SYSTEM Enabled by Advanced Technology

Science.gov (United States)

Green, R. O.; Asner, G. P.; Thompson, D. R.; Mouroulis, P.; Eastwood, M. L.; Chien, S.

2017-12-01

Global coverage imaging spectroscopy in the solar reflected energy portion of the spectrum has been identified by the Earth Decadal Survey as an important measurement that enables a diverse set of new and time critical science objectives/targets for the Earth system. These science objectives include biodiversity; ecosystem function; ecosystem biogeochemistry; initialization and constraint of global ecosystem models; fire fuel, combustion, burn severity, and recovery; surface mineralogy, geochemistry, geologic processes, soils, and hazards; global mineral dust source composition; cryospheric albedo, energy balance, and melting; coastal and inland water habitats; coral reefs; point source gas emission; cloud thermodynamic phase; urban system properties; and more. Traceability of these science objectives to spectroscopic measurement in the visible to short wavelength infrared portion of the spectrum is summarized. New approaches, including satellite constellations, to acquire these global imaging spectroscopy measurements is presented drawing from recent advances in optical design, detector technology, instrument architecture, thermal control, on-board processing, data storage, and downlink.

Understanding the Cryosphere of Europa Using Imaging Spectroscopy

Science.gov (United States)

Blaney, D. L.; Green, R. O.; Hibbitts, C.; Clark, R. N.; Dalton, J. B.; Davies, A. G.; Langevin, Y.; Hedman, M.; Lunine, J. I.; McCord, T. B.; Murchie, S. L.; Paranicas, C.; Seelos, F. P.; Soderblom, J. M.; Diniega, S.

2017-12-01

Europa's surface expresses a complex interplay of geologic processes driven by the ocean beneath the cryosphere that are subsequently modified by the Jovian environment once exposed on the surface. Several recent Earth-based observations of Europa's tenuous atmosphere suggest that there may in fact be active plumes [1,2,3]. However, the frequency and the duration of activity at any specific location cannot be precisely determined by these observations, but could be with spacecraft observations. For instance, recently active areas on Europa from plumes or other processes may result in distinctive spectral signatures on the surface. Possible spectral signatures that may indicate recent activity include: differences in ice grain size or ice crystallinity; the lack of radiolytic signatures (e.g. a deficit in species due to implantation, radiation darkening of salts, degradation of organic compounds); and thermal anomalies. The Mapping Imaging Spectrometer for Europa (MISE) on NASA's Europa Clipper Mission will be able to map these species thus enabling the identification of these deposits and other young and/or least processed areas. These signatures may also enable a relative geochronology for Europa to be developed. For example, recent work by Proctor et al [4] finds that bands of different stratigraphic ages have different spectral features potentially due to radiation effects on the deposits. We will explore borrowing analyses techniques from earth observing missions of the Arctic. On Earth, data from the Airborne Visible / Infrared Imaging Spectrometer Next Generation (AVRIS-NG) (https://avirisng.jpl.nasa.gov/aviris-ng.html) is being used to explore Earth's cryosphere. AVRIS-NG data collected from the Greenland ice sheet and high latitude sea ice is being used to map of key ice properties such as grain size and contaminants. These data and processing approaches will be used to explore and validate imaging spectroscopy approaches which MISE might use on Europa.

Seasonal Composite Chlorophyll Concentrations - Gulf of Maine

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This personal geodatabase contains raster images of chlorophyll concentrations in the Gulf of Maine. These raster images are seasonal composites, and were calculated...

Monthly Composite Chlorophyll Concentrations - Gulf of Maine

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This personal geodatabase contains raster images of chlorophyll concentrations in the Gulf of Maine. These raster images are monthly composites, and were calculated...

Metabolic imaging of human kidney triglyceride content: reproducibility of proton magnetic resonance spectroscopy.

Directory of Open Access Journals (Sweden)

Sebastiaan Hammer

Full Text Available OBJECTIVE: To assess the feasibility of renal proton magnetic resonance spectroscopy for quantification of triglyceride content and to compare spectral quality and reproducibility without and with respiratory motion compensation in vivo. MATERIALS AND METHODS: The Institutional Review Board of our institution approved the study protocol, and written informed consent was obtained. After technical optimization, a total of 20 healthy volunteers underwent renal proton magnetic resonance spectroscopy of the renal cortex both without and with respiratory motion compensation and volume tracking. After the first session the subjects were repositioned and the protocol was repeated to assess reproducibility. Spectral quality (linewidth of the water signal and triglyceride content were quantified. Bland-Altman analyses and a test by Pitman were performed. RESULTS: Linewidth changed from 11.5±0.4 Hz to 10.7±0.4 Hz (all data pooled, p<0.05, without and with respiratory motion compensation respectively. Mean % triglyceride content in the first and second session without respiratory motion compensation were respectively 0.58±0.12% and 0.51±0.14% (P = NS. Mean % triglyceride content in the first and second session with respiratory motion compensation were respectively 0.44±0.10% and 0.43±0.10% (P = NS between sessions and P = NS compared to measurements with respiratory motion compensation. Bland-Altman analyses showed narrower limits of agreement and a significant difference in the correlated variances (correlation of -0.59, P<0.05. CONCLUSION: Metabolic imaging of the human kidney using renal proton magnetic resonance spectroscopy is a feasible tool to assess cortical triglyceride content in humans in vivo and the use of respiratory motion compensation significantly improves spectral quality and reproducibility. Therefore, respiratory motion compensation seems a necessity for metabolic imaging of renal triglyceride content in vivo.

Ghost Imaging of Space Objects

International Nuclear Information System (INIS)

Strekalov, Dmitry V; Erkmen, Baris I; Yu Nan

2013-01-01

The term 'ghost imaging' was coined in 1995 when an optical correlation measurement in combination with an entangled photon-pair source was used to image a mask placed in one optical channel by raster-scanning a detector in the other, empty, optical channel. Later, it was shown that the entangled photon source could be replaced with thermal sources of light, which are abundantly available as natural illumination sources. It was also shown that the bucket detector could be replaced with a remote point-like detector, opening the possibility to remote-sensing imaging applications. In this paper, we discuss the application of ghost-imaging-like techniques to astronomy, with the objective of detecting intensity-correlation signatures resulting from space objects of interest, such as exo-planets, gas clouds, and gravitational lenses. An important aspect of being able to utilize ghost imaging in astronomy, is the recognition that in interstellar imaging geometries the object of interest can act as an effective beam splitter, yielding detectable variations in the intensity-correlation signature.

Modelling raster-based monthly water balance components for Europe

Energy Technology Data Exchange (ETDEWEB)

Ulmen, C.

2000-11-01

The terrestrial runoff component is a comparatively small but sensitive and thus significant quantity in the global energy and water cycle at the interface between landmass and atmosphere. As opposed to soil moisture and evapotranspiration which critically determine water vapour fluxes and thus water and energy transport, it can be measured as an integrated quantity over a large area, i.e. the river basin. This peculiarity makes terrestrial runoff ideally suited for the calibration, verification and validation of general circulation models (GCMs). Gauging stations are not homogeneously distributed in space. Moreover, time series are not necessarily continuously measured nor do they in general have overlapping time periods. To overcome this problems with regard to regular grid spacing used in GCMs, different methods can be applied to transform irregular data to regular so called gridded runoff fields. The present work aims to directly compute the gridded components of the monthly water balance (including gridded runoff fields) for Europe by application of the well-established raster-based macro-scale water balance model WABIMON used at the Federal Institute of Hydrology, Germany. Model calibration and validation is performed by separated examination of 29 representative European catchments. Results indicate a general applicability of the model delivering reliable overall patterns and integrated quantities on a monthly basis. For time steps less then too weeks further research and structural improvements of the model are suggested. (orig.)

A real time S-parameter imaging system

International Nuclear Information System (INIS)

Naik, P.S.; Cheung, C.K.; Beling, C.D.; Fung, S.

2005-01-01

Obtaining a lateral S-parameter image scan from positrons implanted into semiconductor devices can be a helpful research tool both for localizing device structures and in diagnosing defect patterns that could help interpret function. S-parameter images can be obtained by electromagnetically rastering a variable energy positron beam of small spot size across the sample. Here we describe a general hardware and software architecture of relatively low cost that has recently been developed in our laboratory which allows the whole sub-surface S-parameter image of a sample or device to be obtained in real time. This system has the advantage over more conventional sequential scanning techniques of allowing the operator to terminate data collection once the quality of the image is deemed sufficient. As an example of the usefulness of this type of imaging architecture, S-parameter images of a representative sample are presented at two different position implantation energies. (author)

Recommendations concerning magnetic resonance spectroscopy

International Nuclear Information System (INIS)

1986-01-01

In medicine the technique of nuclear magnetic resonance (NMR) is applied in the form of in vivo nuclear magnetic resonance spectroscopy (MRS). In vivo MRS can be carried out non-invasively. The committee of the Dutch Health Council briefly discusses the qualities and potentialities of the nuclei that will probably be used in future clinical spectroscopy: 31 P, 13 C, 1 H (and possibly 19 F and 23 Na). The committee discusses several possibilities of combining imaging and spectroscopy. The imaging of nuclei other than protons is also possible with MRS. Potential applications are considered in oncology, cardiology, neurology and hepatology. (Auth.)

Multi-elemental imaging of paraffin-embedded human samples by laser-induced breakdown spectroscopy

Science.gov (United States)

Moncayo, S.; Trichard, F.; Busser, B.; Sabatier-Vincent, M.; Pelascini, F.; Pinel, N.; Templier, I.; Charles, J.; Sancey, L.; Motto-Ros, V.

2017-07-01

Chemical elements play central roles for physiological homeostasis in human cells, and their dysregulation might lead to a certain number of pathologies. Novel imaging techniques that improve the work of pathologists for tissue analysis and diagnostics are continuously sought. We report the use of Laser-Induced Breakdown Spectroscopy (LIBS) to perform multi-elemental images of human paraffin-embedded skin samples on the entire biopsy scale in a complementary and compatible way with microscope histopathological examination. A specific instrumental configuration is proposed in order to detect most of the elements of medical interest (i.e. P, Al, Mg, Na, Zn, Si, Fe, and Cu). As an example of medical application, we selected and analysed skin biopsies, including healthy skin tissue, cutaneous metastasis of melanoma, Merkel-cell carcinoma and squamous cell carcinoma. Clear distinctions in the distribution of chemical elements are observed from the different samples investigated. This study demonstrates the high complementarity of LIBS elemental imaging with conventional histopathology, opening new opportunities for any medical application involving metals.

Wide-field time-resolved luminescence imaging and spectroscopy to decipher obliterated documents in forensic science

Science.gov (United States)

Suzuki, Mototsugu; Akiba, Norimitsu; Kurosawa, Kenji; Kuroki, Kenro; Akao, Yoshinori; Higashikawa, Yoshiyasu

2016-01-01

We applied a wide-field time-resolved luminescence (TRL) method with a pulsed laser and a gated intensified charge coupled device (ICCD) for deciphering obliterated documents for use in forensic science. The TRL method can nondestructively measure the dynamics of luminescence, including fluorescence and phosphorescence lifetimes, which prove to be useful parameters for image detection. First, we measured the TRL spectra of four brands of black porous-tip pen inks on paper to estimate their luminescence lifetimes. Next, we acquired the TRL images of 12 obliterated documents at various delay times and gate times of the ICCD. The obliterated contents were revealed in the TRL images because of the difference in the luminescence lifetimes of the inks. This method requires no pretreatment, is nondestructive, and has the advantage of wide-field imaging, which makes it is easy to control the gate timing. This demonstration proves that TRL imaging and spectroscopy are powerful tools for forensic document examination.

EmpiricalValues_Chlorophyll_GrandComposite

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This personal geodatabase contains raster images of chlorophyll concentrations in the Gulf of Maine. These raster images are a composite of several years (1997-2005)...

Highly multiplexible thermal kinetic inductance detectors for x-ray imaging spectroscopy

International Nuclear Information System (INIS)

Ulbricht, Gerhard; Mazin, Benjamin A.; Szypryt, Paul; Walter, Alex B.; Bockstiegel, Clint; Bumble, Bruce

2015-01-01

For X-ray imaging spectroscopy, high spatial resolution over a large field of view is often as important as high energy resolution, but current X-ray detectors do not provide both in the same device. Thermal Kinetic Inductance Detectors (TKIDs) are being developed as they offer a feasible way to combine the energy resolution of transition edge sensors with pixel counts approaching CCDs and thus promise significant improvements for many X-ray spectroscopy applications. TKIDs are a variation of Microwave Kinetic Inductance Detectors (MKIDs) and share their multiplexibility: working MKID arrays with 2024 pixels have recently been demonstrated and much bigger arrays are under development. In this work, we present a TKID prototype, which is able to achieve an energy resolution of 75 eV at 5.9 keV, even though its general design still has to be optimized. We further describe TKID fabrication, characterization, multiplexing, and working principle and demonstrate the necessity of a data fitting algorithm in order to extract photon energies. With further design optimizations, we expect to be able to improve our TKID energy resolution to less than 10 eV at 5.9 keV

Highly multiplexible thermal kinetic inductance detectors for x-ray imaging spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Ulbricht, Gerhard, E-mail: ulbricht@physics.ucsb.edu; Mazin, Benjamin A.; Szypryt, Paul; Walter, Alex B.; Bockstiegel, Clint [Department of Physics, University of California, Santa Barbara, California 93106 (United States); Bumble, Bruce [NASA Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, California 91125 (United States)

2015-06-22

For X-ray imaging spectroscopy, high spatial resolution over a large field of view is often as important as high energy resolution, but current X-ray detectors do not provide both in the same device. Thermal Kinetic Inductance Detectors (TKIDs) are being developed as they offer a feasible way to combine the energy resolution of transition edge sensors with pixel counts approaching CCDs and thus promise significant improvements for many X-ray spectroscopy applications. TKIDs are a variation of Microwave Kinetic Inductance Detectors (MKIDs) and share their multiplexibility: working MKID arrays with 2024 pixels have recently been demonstrated and much bigger arrays are under development. In this work, we present a TKID prototype, which is able to achieve an energy resolution of 75 eV at 5.9 keV, even though its general design still has to be optimized. We further describe TKID fabrication, characterization, multiplexing, and working principle and demonstrate the necessity of a data fitting algorithm in order to extract photon energies. With further design optimizations, we expect to be able to improve our TKID energy resolution to less than 10 eV at 5.9 keV.

Role of magnetic resonance imaging (MRI), MR spectroscopy (MRS) and other imaging modalities in breast cancer

International Nuclear Information System (INIS)

Sharma, Uma; Virendra Kumar; Jagannathan, N.R.

2004-01-01

Breast cancer is the commonest cancer among women world over and the diagnosis continues to generate fear and turmoil in the life of patients and their families. This article describes the currently available techniques used for screening primary and recurrent breast cancers and the evaluation of therapeutic response of breast cancer with special emphasis on MRI and MRS techniques. MRI, a noninvasive technique, provides anatomic images in multiple planes enabling tissue characterization. Contrast enhanced MR studies have been found to be useful in the diagnosis of small tumors in dense breast benign diseases from malignant ones. In vivo magnetic resonance spectroscopy (MRS) is another useful technique for diagnosis and for assessing the biochemical status of normal and diseased tissues. Being noninvasive, MR techniques can be used repetitively for assessment of response of the tumor to various therapeutic regimens and for evaluating the efficacy of drugs at both the structural and molecular level. An overview of the various aspects of different imaging modalities used in breast cancer research including various in vivo MR methodologies with clinical examples is presented in this review. (author)

Apparent brain temperature imaging with multi-voxel proton magnetic resonance spectroscopy compared with cerebral blood flow and metabolism imaging on positron emission tomography in patients with unilateral chronic major cerebral artery steno-occlusive disease

Energy Technology Data Exchange (ETDEWEB)

Nanba, Takamasa; Nishimoto, Hideaki; Murakami, Toshiyuki; Fujiwara, Shunrou; Ogasawara, Kuniaki [Iwate Medical University, Department of Neurosurgery, Iwate (Japan); Yoshioka, Yoshichika [Osaka University, Open and Transdisciplinary Research Initiatives, Osaka (Japan); Sasaki, Makoto; Uwano, Ikuko [Iwate Medical University, Institute for Biomedical Science, Iwate (Japan); Terasaki, Kazunori [Iwate Medical University, Cyclotron Research Center, Iwate (Japan)

2017-09-15

The purpose of the present study was to determine whether apparent brain temperature imaging using multi-voxel proton magnetic resonance (MR) spectroscopy correlates with cerebral blood flow (CBF) and metabolism imaging in the deep white matter of patients with unilateral chronic major cerebral artery steno-occlusive disease. Apparent brain temperature and CBF and metabolism imaging were measured using proton MR spectroscopy and {sup 15}O-positron emission tomography (PET), respectively, in 35 patients. A set of regions of interest (ROIs) of 5 x 5 voxels was placed on an MR image so that the voxel row at each edge was located in the deep white matter of the centrum semiovale in each cerebral hemisphere. PET images were co-registered with MR images with these ROIs and were re-sliced automatically using image analysis software. In 175 voxel pairs located in the deep white matter, the brain temperature difference (affected hemisphere - contralateral hemisphere: ΔBT) was correlated with cerebral blood volume (CBV) (r = 0.570) and oxygen extraction fraction (OEF) ratios (affected hemisphere/contralateral hemisphere) (r = 0.641). We excluded voxels that contained ischemic lesions or cerebrospinal fluid and calculated the mean values of voxel pairs in each patient. The mean ΔBT was correlated with the mean CBF (r = - 0.376), mean CBV (r = 0.702), and mean OEF ratio (r = 0.774). Apparent brain temperature imaging using multi-voxel proton MR spectroscopy was correlated with CBF and metabolism imaging in the deep white matter of patients with unilateral major cerebral artery steno-occlusive disease. (orig.)

Semantic 3d City Model to Raster Generalisation for Water Run-Off Modelling

Science.gov (United States)

Verbree, E.; de Vries, M.; Gorte, B.; Oude Elberink, S.; Karimlou, G.

2013-09-01

Water run-off modelling applied within urban areas requires an appropriate detailed surface model represented by a raster height grid. Accurate simulations at this scale level have to take into account small but important water barriers and flow channels given by the large-scale map definitions of buildings, street infrastructure, and other terrain objects. Thus, these 3D features have to be rasterised such that each cell represents the height of the object class as good as possible given the cell size limitations. Small grid cells will result in realistic run-off modelling but with unacceptable computation times; larger grid cells with averaged height values will result in less realistic run-off modelling but fast computation times. This paper introduces a height grid generalisation approach in which the surface characteristics that most influence the water run-off flow are preserved. The first step is to create a detailed surface model (1:1.000), combining high-density laser data with a detailed topographic base map. The topographic map objects are triangulated to a set of TIN-objects by taking into account the semantics of the different map object classes. These TIN objects are then rasterised to two grids with a 0.5m cell-spacing: one grid for the object class labels and the other for the TIN-interpolated height values. The next step is to generalise both raster grids to a lower resolution using a procedure that considers the class label of each cell and that of its neighbours. The results of this approach are tested and validated by water run-off model runs for different cellspaced height grids at a pilot area in Amersfoort (the Netherlands). Two national datasets were used in this study: the large scale Topographic Base map (BGT, map scale 1:1.000), and the National height model of the Netherlands AHN2 (10 points per square meter on average). Comparison between the original AHN2 height grid and the semantically enriched and then generalised height grids shows

Spectroscopy and Raman imaging of inhomogeneous materials

International Nuclear Information System (INIS)

Maslova, Olga

2014-01-01

This thesis is aimed at developing methodologies in Raman spectroscopy and imaging. After reviewing the statistical instruments which allow treating giant amount of data (multivariate analysis and classification), the study is applied to two families of well-known materials which are used as models for testing the limits of the implemented developments. The first family is a series of carbon materials pyrolyzed at various temperatures and exhibiting inhomogeneities at a nm scale which is suitable for Raman-X-ray diffraction combination. Another results concern the polishing effect on carbon structure. Since it is found to induce Raman artifacts leading to the overestimation of the local structural disorder, a method based on the use of the G band width is therefore proposed in order to evaluate the crystallite size in both unpolished and polished nano-graphites. The second class of materials presents inhomogeneities at higher (micrometric) scales by the example of uranium dioxide ceramics. Being well adapted in terms of spatial scale, Raman imaging is thus used for probing their surfaces. Data processing is implemented via an approach combining the multivariate (principal component) analysis and the classical fitting procedure with Lorentzian profiles. The interpretation of results is supported via electron backscattering diffraction (EBSD) analysis which enables us to distinguish the orientation effects of ceramic grains from other underlying contributions. The last ones are mainly localized at the grain boundaries, that is testified by the appearance of a specific Raman mode. Their origin seems to be caused by stoichiometric oxygen variations or impurities, as well as strain inhomogeneities. The perspectives of this work include both the implementation of other mathematical methods and in-depth analysis of UO 2 structure damaged by irradiation (anisotropic effects, role of grain boundaries). (author) [fr

Application of magnetic resonance imaging and spectroscopy in studying the biological effects of manufactured nanoparticles

International Nuclear Information System (INIS)

Lei Hao; Wei Li; Liu Maili

2006-01-01

With the rapid development of nanoscience and nanotechnology in recent years, growing research interest and efforts have been directed to study the biological effects of manufactured nanoparticles and substances alike. Despite the fact that significant progress has been made, this is still largely an uncharted field. Any advances in this field would certainly require thorough multi-disciplinary collaboration, in which the expertise and tools in nanoscience/nanotechnoloogy, physics, chemistry and biomedicine have to be combined. Due to their wide range of applications in physics, chemistry and biomedicine, magnetic resonance (MR) imaging and spectroscopy are among the most important and powerful research tools currently in use, mainly because these techniques can be used in situ and noninvasively to acquire dynamic and real-time information in various samples ranging from protein solution to the human brain. In this paper, the application of MR imaging and spectroscopy in studying the biological effects of manufactured nanoparticles is discussed. It is expected that these techniques will play important roles in 1) detecting the presence of nanoparticles in biological tissues and in vivo, 2) studying the interactions between the nanoparticles and biomolecules and 3) investigating the metabonomic aspect of the biological effects of nanoparticles. (authors)

Acupuncture therapy in treating migraine: results of a magnetic resonance spectroscopy imaging study.

Science.gov (United States)

Gu, Tao; Lin, Lei; Jiang, Yun; Chen, Juan; D'Arcy, Ryan Cn; Chen, Min; Song, Xiaowei

2018-01-01

Acupuncture has been proven to be effective as an alternative therapy in treating migraine, but the pathophysiological mechanisms of the treatment remain unclear. This study investigated possible neurochemical responses to acupuncture treatment. Proton magnetic resonance spectroscopy imaging was used to investigate biochemical levels pre- and post-acupuncture treatment. Participants (N=45) included subjects diagnosed with: 1) migraine without aura; 2) cervicogenic headache; and 3) healthy controls. Participants in the two patient groups received verum acupuncture using acupoints that target migraine without aura but not cervicogenic headache, while the healthy controls received a sham treatment. All participants had magnetic resonance spectroscopy scans before and after the acupuncture therapy. Levels of brain metabolites were examined in relation to clinical headache assessment scores. A significant increase in N -acetylaspartate/creatine was observed in bilateral thalamus in migraine without aura after the acupuncture treatment, which was significantly correlated with the headache intensity score. The data demonstrate brain biochemical changes underlying the effect of acupuncture treatment of migraine.

19F labelled dextrans and antibodies as NMR imaging and spectroscopy agents

International Nuclear Information System (INIS)

Antich, P.P.; Kulkarni, P.V.

1993-01-01

A method is described of NMR imaging or spectroscopy, comprising the steps of administering to a living subject a 19 F labelled NMR agent, the NMR agent comprising (a) a transport polymer selected from the group consisting of dextran polymers and amino dextrans, having a molecular weight between approximately 100 d and 500 kd, and antibodies and fragments thereof, and (b) a 19F-containing sensor moiety selected from the group consisting of fluorinated alkyls, fluorinated acetates, fluoroaniline, and fluoroalkyl phosphonates, in an amount effective to provide a detectable NMR signal; and then detecting the 19 F NMR signal produced

A 2-Tesla active shield magnet for whole body imaging and spectroscopy

International Nuclear Information System (INIS)

Davies, F.J.; Elliott, R.T.; Hawksworth, D.G.

1991-01-01

This paper reports on the development and testing of a 2T superconducting Active Shield magnet, with a 0.99m diameter warm bore for whole-body Magnetic Resonance Imaging (MRI) and spectroscopy. The magnet and cryostat were designed to meet the same performance standards as existing MRI magnets, but with the volume of the stray field region reduced to less than 4% of that for an unshielded magnet. The 0.5 mT stray field contour is within 5m axially and 3m radially of the magnet center. The system weight is only 14 tonnes

In vivo19F MR imaging and spectroscopy for the BNCT optimization

International Nuclear Information System (INIS)

Porcari, P.; Capuani, S.; D'Amore, E.; Lecce, M.; La Bella, A.; Fasano, F.; Migneco, L.M.; Campanella, R.; Maraviglia, B.; Pastore, F.S.

2009-01-01

The aim of this study was to evaluate in vivo the boron biodistribution and pharmacokinetics of 4-borono-2-fluorophenylalanine ( 19 F-BPA) using 19 F MR Imaging ( 19 F MRI) and Spectroscopy ( 19 F MRS). The correlation between the results obtained by both techniques, 19 F MRI on rat brain and 19 F MRS on blood samples, showed the maximum 19 F-BPA uptake in C6 glioma model at 2.5 h after infusion determining the optimal irradiation time. Moreover, the effect of L-DOPA as potential enhancer of 19 F-BPA tumour intake was assessed using 19 F MRI.

Electrically-cooled HPGe detector for advanced x-ray spectroscopy and imaging

Energy Technology Data Exchange (ETDEWEB)

Marian, V.; Clauss, J.; Pirard, B.; Quirin, P.; Flamanc, J.; Lampert, M.O. [CANBERRA France, Parc des Tanneries, 1, chemin de la roseraie, 67380 Lingolsheim (France)

2015-07-01

High Purity Germanium (HPGe) detectors are used for high-resolution x- and gamma-ray spectroscopy. For their operation, the necessary cryogenic cooling is performed with liquid nitrogen or with electromechanical coolers. Although mature and industrialized solutions, most of HPGe detectors integrating electrical coolers present a limited spectroscopic performance due to the generated mechanical vibration and electromagnetic interference. This paper describes a novel HPGe detector, specifically designed to address the challenges of ultimate x-ray spectroscopy and imaging applications. Due to the stringent demands associated with nano-scale imaging in synchrotron applications, a custom-designed cryostat was built around a Canberra CP5-Plus electrical cooler featuring extremely low vibration levels and high cooling power. The heat generated by the cryo-cooler itself, as well as the electronics, is evacuated via an original liquid cooling circuit. This architecture can also be used to address high ambient temperature, which does not allow conventional cryo-coolers to work properly. The multichannel detector head can consist of a segmented monolithic HPGe sensor, or several closely packed sensors. Each sensor channel is read out by state-of-the-art pulse-reset preamplifiers in order to achieve excellent energy resolution for count rates in excess of 1 Mcps. The sensitive electronics are located in EMI-proof housings to avoid any interference from other devices on a beam-line. The front-end of the detector is built using selected high-purity materials and alloys to avoid any fluorescence effects. We present a detailed description of the detector design and we report on its performance. A discussion is also given on the use of electrically cooled HPGe detectors for applications requiring ultimate energy resolution, such as synchrotron, medicine or nuclear industry. (authors)

MR imaging and MR spectroscopy for characterization of cardiomyopathies in adolescents - preliminary results

International Nuclear Information System (INIS)

Beer, M.; Buchner, S.; Fuchs, J.; Machann, W.; Ritter, C.O.; Beissert, M.; Darge, K.; Hahn, D.; Koestler, H.; Wirbelauer, J.

2007-01-01

Purpose: Cardiomyopathy is a rare but life-threatening disease in children and adolescents. Recent studies reported morphological, functional or metabolic alterations of the heart. We discuss a combined MR imaging and 31 P MR spectroscopy (MRS) protocol allowing the analysis of interdependencies between these parameters. Since normal values of cardiac MR parameters in this age group are not available, we included studies of age-matched healthy adolescents. Materials and Methods: 2D-CINE was used to assess left ventricular (LV) parameters. Additional 3D-Chemical Shift Imaging (3D-CSI) and Spectral Localization with Optimal Pointspread Function (SLOOP) reconstruction allowed quantification of the cardiac energy metabolism. Patients (n = 4; all male; age 16.8 ± 2.9 years) were included on the basis of an echocardiographic diagnosis of possible cardiomyopathy. The same protocol was applied to healthy young volunteers (n = 4; 1 female, 3 male; age 15.5 ± 0.6 years). Results: The patients had a significantly higher LV mass index compared to the control group (147 ± 41 g/m2 versus 97 ± 16 g/m2; p = 0.04). The other LV parameters (including LV EF with 59 ± 22 % versus 67 ± 10 %) showed no significant differences. The phosphocreatine to adenosine triphosphate ratio (PCr/ATP-ratio) of the patients was reduced to 1.71 ± 0.40 versus 2.44 ± 0.30 (p = 0.01), combined with a tendency towards decreased PCr concentrations of 9.1 ± 2.5 versus 7.9 ± 1.0 mmol/kg. Conclusion: The combination of 31 P MR spectroscopy and MR imaging allows quantitative determination of morphologic, functional and metabolic alterations in adolescents with suspected cardiomyopathy in one examination procedure. The reduction of energy metabolism combined with unaltered global function may indicate a primary role of metabolism in the pathogenesis of cardiomyopathies in adolescents. (orig.)

Non-contact optoacoustic imaging with focused air-coupled transducers

Energy Technology Data Exchange (ETDEWEB)

Deán-Ben, X. Luís [Institute for Biological and Medical Imaging (IBMI), Helmholtz Zentrum München, Neuherberg (Germany); Pang, Genny A.; Razansky, Daniel, E-mail: dr@tum.de [Institute for Biological and Medical Imaging (IBMI), Helmholtz Zentrum München, Neuherberg (Germany); School of Medicine, Technische Universität München (TUM), Munich (Germany); Montero de Espinosa, Francisco [CSIC, Institute of Physics and Communication Technologies, Madrid (Spain)

2015-08-03

Non-contact optoacoustic imaging employing raster-scanning of a spherically focused air-coupled ultrasound transducer is showcased herein. Optoacoustic excitation with laser fluence within the maximal permissible human exposure limits in the visible and near-infrared spectra is applied to objects with characteristic dimensions smaller than 1 mm and absorption properties representative of the whole blood at near-infrared wavelengths, and these signals are shown to be detectable without contact to the sample using an air-coupled transducer with reasonable signal averaging. Optoacoustic images of vessel-mimicking tubes embedded in an agar phantom captured with this non-contact sensing technique are also showcased. These initial results indicate that an air-coupled ultrasound detection approach can be suitable for non-contact biomedical imaging with optoacoustics.

Optimization of Sample Preparation and Instrumental Parameters for the Rapid Analysis of Drugs of Abuse in Hair samples by MALDI-MS/MS Imaging

Science.gov (United States)

Flinders, Bryn; Beasley, Emma; Verlaan, Ricky M.; Cuypers, Eva; Francese, Simona; Bassindale, Tom; Clench, Malcolm R.; Heeren, Ron M. A.

2017-08-01

Matrix-assisted laser desorption/ionization-mass spectrometry imaging (MALDI-MSI) has been employed to rapidly screen longitudinally sectioned drug user hair samples for cocaine and its metabolites using continuous raster imaging. Optimization of the spatial resolution and raster speed were performed on intact cocaine contaminated hair samples. The optimized settings (100 × 150 μm at 0.24 mm/s) were subsequently used to examine longitudinally sectioned drug user hair samples. The MALDI-MS/MS images showed the distribution of the most abundant cocaine product ion at m/z 182. Using the optimized settings, multiple hair samples obtained from two users were analyzed in approximately 3 h: six times faster than the standard spot-to-spot acquisition method. Quantitation was achieved using longitudinally sectioned control hair samples sprayed with a cocaine dilution series. A multiple reaction monitoring (MRM) experiment was also performed using the `dynamic pixel' imaging method to screen for cocaine and a range of its metabolites, in order to differentiate between contaminated hairs and drug users. Cocaine, benzoylecgonine, and cocaethylene were detectable, in agreement with analyses carried out using the standard LC-MS/MS method. [Figure not available: see fulltext.

Multimodal fluorescence imaging spectroscopy

NARCIS (Netherlands)

Stopel, Martijn H W; Blum, Christian; Subramaniam, Vinod; Engelborghs, Yves; Visser, Anthonie J.W.G.

2014-01-01

Multimodal fluorescence imaging is a versatile method that has a wide application range from biological studies to materials science. Typical observables in multimodal fluorescence imaging are intensity, lifetime, excitation, and emission spectra which are recorded at chosen locations at the sample.

Heroin-induced leukoencephalopathy: characterization using MRI, diffusion-weighted imaging, and MR spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Offiah, C. [Department of Neuroradiology, St Bartholomew' s and the London Hospitals NHS Trust, London (United Kingdom); Hall, E. [Department of Neuroradiology, St Bartholomew' s and the London Hospitals NHS Trust, London (United Kingdom)], E-mail: curtis.offiah@bartsandthelondon.nhs.uk

2008-02-15

Aim: To describe the magnetic resonance imaging (MRI) characteristics of heroin-induced leukoencephalopathy or 'chasing the dragon syndrome' and, in particular, the diffusion-weighted imaging (DWI) and MR spectroscopy (MRS) features. Material and methods: Six patients with a clinical or histopathological diagnosis of heroin-induced leukoencephalopathy were identified and MRI examinations, including DWI and single-voxel MRS, reviewed. Results: Cerebellar white matter was involved in all six cases demonstrating similar symmetrical distribution with sparing of the dentate nuclei. Brain stem signal change was evident in five of the six patients imaged. Supratentorial brain parenchymal involvement, as well as brain stem involvement, correlated anatomically with corticospinal tract distribution. None of the areas of signal abnormality were restricted on DWI. Of those patients subjected to MRS, the areas of parenchymal damage demonstrated reduced N-acetylaspartate, reduced choline, and elevated lactate. Conclusion: Heroin-induced leukoencephalopathy results in characteristic and highly specific signal abnormalities on MRI, which can greatly aid diagnosis. DWI and MRS findings can be explained by known reported neuropathological descriptions in this condition and can be used to support a proposed mechanism for the benefit of current recommended drug treatment regimes.

Magnetic resonance spectroscopy imaging in the diagnosis of prostate cancer: initial experience

International Nuclear Information System (INIS)

Melo, Homero Jose de Farias e; Abdala, Nitamar; Goldman, Suzan Menasce; Szejnfeld, Jacob

2009-01-01

Objective: to report an experiment involving the introduction of a protocol utilizing commercially available three-dimensional 1H magnetic resonance spectroscopy imaging (3D 1H MRSI) method in patients diagnosed with prostatic tumors under suspicion of neoplasm. Materials and methods: forty-one patients in the age range between 51 and 80 years (mean, 67 years) were prospectively evaluated. The patients were divided into two groups: patients with one or more biopsies negative for cancer and high specific-prostatic antigen levels (group A), and patients with cancer confirmed by biopsy (group B). The determination of the target area (group A) or the known cancer extent (group B) was based on magnetic resonance imaging and MRSI studies. Results: the specificity of MRSI in the diagnosis of prostate cancer was lower than the specificity reported in the literature (about 47%). On the other hand, for tumor staging, it corresponded to the specificity reported in the literature. Conclusion: the introduction and standardization of 3D 1H MRSI has allowed the obtention of a presumable diagnosis of prostate cancer, by a combined analysis of magnetic resonance imaging and metabolic data from 3D 1H MRSI. (author)

Raster image correlation spectroscopy as a novel tool to study interactions of macromolecules with nanofiber scaffolds

Czech Academy of Sciences Publication Activity Database

Norris, S. C. P.; Humpolíčková, Jana; Amler, Evžen; Huranová, Martina; Buzgo, Matej; Macháň, Radek; Lukáš, D.; Hof, Martin

2011-01-01

Roč. 7, č. 12 (2011), s. 4195-4203 ISSN 1742-7061 R&D Projects: GA MŠk(CZ) LC06063; GA AV ČR IAA500390702; GA ČR GAP304/10/1307 Institutional research plan: CEZ:AV0Z40400503; CEZ:AV0Z50390512; CEZ:AV0Z50390703; CEZ:AV0Z50520514 Keywords : fluorecence dynamics * transient binding * diffusion Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 4.865, year: 2011

Spatially Resolved Imaging and Spectroscopy of Candidate Dual Active Galactic Nuclei

Science.gov (United States)

McGurk, R. C.; Max, C. E.; Medling, A. M.; Shields, G. A.; Comerford, J. M.

2015-09-01

When galaxies merge, both central supermassive black holes are immersed in a dense and chaotic environment. If there is sufficient gas in the nuclear regions, one expects to see close pairs of active galactic nuclei (AGNs), or dual AGNs, in a fraction of galaxy mergers. However, finding them remains a challenge. The presence of double-peaked [O iii] emission lines has been proposed as a technique to select dual AGNs efficiently. We studied a sample of double-peaked narrow [O iii] emitting AGNs from Sloan Digital Sky Survey (SDSS) DR7. By obtaining new and archival high spatial resolution images taken with the Keck II Laser Guide Star Adaptive Optics system and the near-infrared camera NIRC2, we show that 30% of 140 double-peaked [O iii] emission line SDSS AGNs have two spatial components within a 3″ radius. However, spatially resolved spectroscopy or X-ray observations are needed to confirm these galaxy pairs as systems containing two AGNs. We followed up three spatially double candidate dual AGNs with integral field spectroscopy from Keck OSIRIS and 10 candidates with long-slit spectroscopy from the Shane Kast Double Spectrograph at Lick Observatory. We find that the double-peaked emission lines in our sample of 12 candidates are caused by: one dual AGN (SDSS J114642.47+511029.6), one confirmed outflow and four likely outflows, two pairs of star-forming galaxies, one candidate indeterminate due to sky line interference, and three AGNs with spatially coincident double [O iii] peaks, likely due to unresolved complex narrow line kinematics, outflows, binary AGN, or small-scale jets.

SPATIALLY RESOLVED IMAGING AND SPECTROSCOPY OF CANDIDATE DUAL ACTIVE GALACTIC NUCLEI

Energy Technology Data Exchange (ETDEWEB)

McGurk, R. C.; Max, C. E. [Astronomy Department and UCO-Lick Observatory, University of California, Santa Cruz, CA 95064 (United States); Medling, A. M. [Research School of Astronomy and Astrophysics, Australian National University, Mount Stromlo Observatory, Cotter Road, Weston Creek, ACT 2611 (Australia); Shields, G. A. [Laguna Falls Institute for Astrophysics, Austin, TX 78746 (United States); Comerford, J. M., E-mail: rosalie.mcgurk@gmail.com, E-mail: max@ucolick.org, E-mail: anne.medling@anu.edu.au, E-mail: shields@lfastro.org, E-mail: julie.comerford@colorado.edu [Department of Astrophysical and Planetary Sciences, University of Colorado, Boulder, CO 80309 (United States)

2015-09-20

When galaxies merge, both central supermassive black holes are immersed in a dense and chaotic environment. If there is sufficient gas in the nuclear regions, one expects to see close pairs of active galactic nuclei (AGNs), or dual AGNs, in a fraction of galaxy mergers. However, finding them remains a challenge. The presence of double-peaked [O iii] emission lines has been proposed as a technique to select dual AGNs efficiently. We studied a sample of double-peaked narrow [O iii] emitting AGNs from Sloan Digital Sky Survey (SDSS) DR7. By obtaining new and archival high spatial resolution images taken with the Keck II Laser Guide Star Adaptive Optics system and the near-infrared camera NIRC2, we show that 30% of 140 double-peaked [O iii] emission line SDSS AGNs have two spatial components within a 3″ radius. However, spatially resolved spectroscopy or X-ray observations are needed to confirm these galaxy pairs as systems containing two AGNs. We followed up three spatially double candidate dual AGNs with integral field spectroscopy from Keck OSIRIS and 10 candidates with long-slit spectroscopy from the Shane Kast Double Spectrograph at Lick Observatory. We find that the double-peaked emission lines in our sample of 12 candidates are caused by: one dual AGN (SDSS J114642.47+511029.6), one confirmed outflow and four likely outflows, two pairs of star-forming galaxies, one candidate indeterminate due to sky line interference, and three AGNs with spatially coincident double [O iii] peaks, likely due to unresolved complex narrow line kinematics, outflows, binary AGN, or small-scale jets.

SPATIALLY RESOLVED IMAGING AND SPECTROSCOPY OF CANDIDATE DUAL ACTIVE GALACTIC NUCLEI

International Nuclear Information System (INIS)

McGurk, R. C.; Max, C. E.; Medling, A. M.; Shields, G. A.; Comerford, J. M.

2015-01-01

When galaxies merge, both central supermassive black holes are immersed in a dense and chaotic environment. If there is sufficient gas in the nuclear regions, one expects to see close pairs of active galactic nuclei (AGNs), or dual AGNs, in a fraction of galaxy mergers. However, finding them remains a challenge. The presence of double-peaked [O iii] emission lines has been proposed as a technique to select dual AGNs efficiently. We studied a sample of double-peaked narrow [O iii] emitting AGNs from Sloan Digital Sky Survey (SDSS) DR7. By obtaining new and archival high spatial resolution images taken with the Keck II Laser Guide Star Adaptive Optics system and the near-infrared camera NIRC2, we show that 30% of 140 double-peaked [O iii] emission line SDSS AGNs have two spatial components within a 3″ radius. However, spatially resolved spectroscopy or X-ray observations are needed to confirm these galaxy pairs as systems containing two AGNs. We followed up three spatially double candidate dual AGNs with integral field spectroscopy from Keck OSIRIS and 10 candidates with long-slit spectroscopy from the Shane Kast Double Spectrograph at Lick Observatory. We find that the double-peaked emission lines in our sample of 12 candidates are caused by: one dual AGN (SDSS J114642.47+511029.6), one confirmed outflow and four likely outflows, two pairs of star-forming galaxies, one candidate indeterminate due to sky line interference, and three AGNs with spatially coincident double [O iii] peaks, likely due to unresolved complex narrow line kinematics, outflows, binary AGN, or small-scale jets

NMR imaging and spectroscopy of the mammalian central nervous system after heavy ion radiation

International Nuclear Information System (INIS)

Richards, T.

1984-09-01

NMR imaging, NMR spectroscopic, and histopathologic techniques were used to study the proton relaxation time and related biochemical changes in the central nervous system after helium beam in vivo irradiation of the rodent brain. The spectroscopic observations reported in this dissertation were made possible by development of methods for measuring the NMR parameters of the rodent brain in vivo and in vitro. The methods include (1) depth selective spectroscopy using an optimization of rf pulse energy based on a priori knowledge of N-acetyl aspartate and lipid spectra of the normal brain, (2) phase-encoded proton spectroscopy of the living rodent using a surface coil, and (3) dual aqueous and organic tissue extraction technique for spectroscopy. Radiation induced increases were observed in lipid and p-choline peaks of the proton spectrum, in vivo. Proton NMR spectroscopy measurements on brain extracts (aqueous and organic solvents) were made to observe chemical changes that could not be seen in vivo. Radiation-induced changes were observed in lactate, GABA, glutamate, and p-choline peak areas of the aqueous fraction spectra. In the organic fraction, decreases were observed in peak area ratios of the terminal-methyl peaks, the N-methyl groups of choline, and at a peak at 2.84 ppM (phosphatidyl ethanolamine and phosphatidyl serine resonances) relative to TMS. With histology and Evans blue injections, blood-brain barrier alternations were seen as early as 4 days after irradiation. 83 references, 53 figures

NMR imaging and spectroscopy of the mammalian central nervous system after heavy ion radiation

Energy Technology Data Exchange (ETDEWEB)

Richards, T.

1984-09-01

NMR imaging, NMR spectroscopic, and histopathologic techniques were used to study the proton relaxation time and related biochemical changes in the central nervous system after helium beam in vivo irradiation of the rodent brain. The spectroscopic observations reported in this dissertation were made possible by development of methods for measuring the NMR parameters of the rodent brain in vivo and in vitro. The methods include (1) depth selective spectroscopy using an optimization of rf pulse energy based on a priori knowledge of N-acetyl aspartate and lipid spectra of the normal brain, (2) phase-encoded proton spectroscopy of the living rodent using a surface coil, and (3) dual aqueous and organic tissue extraction technique for spectroscopy. Radiation induced increases were observed in lipid and p-choline peaks of the proton spectrum, in vivo. Proton NMR spectroscopy measurements on brain extracts (aqueous and organic solvents) were made to observe chemical changes that could not be seen in vivo. Radiation-induced changes were observed in lactate, GABA, glutamate, and p-choline peak areas of the aqueous fraction spectra. In the organic fraction, decreases were observed in peak area ratios of the terminal-methyl peaks, the N-methyl groups of choline, and at a peak at 2.84 ppM (phosphatidyl ethanolamine and phosphatidyl serine resonances) relative to TMS. With histology and Evans blue injections, blood-brain barrier alternations were seen as early as 4 days after irradiation. 83 references, 53 figures.

Design of high-efficiency diffractive optical elements towards ultrafast mid-infrared time-stretched imaging and spectroscopy

Science.gov (United States)

Xie, Hongbo; Ren, Delun; Wang, Chao; Mao, Chensheng; Yang, Lei

2018-02-01

Ultrafast time stretch imaging offers unprecedented imaging speed and enables new discoveries in scientific research and engineering. One challenge in exploiting time stretch imaging in mid-infrared is the lack of high-quality diffractive optical elements (DOEs), which encode the image information into mid-infrared optical spectrum. This work reports the design and optimization of mid-infrared DOE with high diffraction-efficiency, broad bandwidth and large field of view. Using various typical materials with their refractive indices ranging from 1.32 to 4.06 in ? mid-infrared band, diffraction efficiencies of single-layer and double-layer DOEs have been studied in different wavelength bands with different field of views. More importantly, by replacing the air gap of double-layer DOE with carefully selected optical materials, one optimized ? triple-layer DOE, with efficiency higher than 95% in the whole ? mid-infrared window and field of view greater than ?, is designed and analyzed. This new DOE device holds great potential in ultrafast mid-infrared time stretch imaging and spectroscopy.

High-resolution three-dimensional compositional imaging by double-pulse laser-induced breakdown spectroscopy

International Nuclear Information System (INIS)

Schiavo, C.; Grifoni, E.; Legnaioli, S.; Lorenzetti, G.; Poggialini, F.; Pagnotta, S.; Palleschi, V.; Menichetti, L.

2016-01-01

In this paper we present a new instrument specifically realized for high-resolution three-dimensional compositional analysis and mapping of materials. The instrument is based on the coupling of a Double-Pulse Laser-Induced Breakdown Spectroscopy (LIBS) instrument with an optical microscope. The compositional mapping of the samples is obtained by scanning the laser beam across the surface of the sample, while the in depth analysis is performed by sending multiple laser pulses on the same point. Depths of analysis of several tens of microns can be obtained. The instrument presented has definite advantages with respect to Laser Ablation-ICP Mass Spectrometry in many applications related to material analysis, biomedicine and environmental diagnostics. An application to the diagnostics of industrial ceramics is presented, demonstrating the feasibility of Double-Pulse LIBS Imaging and its advantages with respect to conventional single-pulse LIBS imaging.

Resolving Fast, Confined Diffusion in Bacteria with Image Correlation Spectroscopy.

Science.gov (United States)

Rowland, David J; Tuson, Hannah H; Biteen, Julie S

2016-05-24

By following single fluorescent molecules in a microscope, single-particle tracking (SPT) can measure diffusion and binding on the nanometer and millisecond scales. Still, although SPT can at its limits characterize the fastest biomolecules as they interact with subcellular environments, this measurement may require advanced illumination techniques such as stroboscopic illumination. Here, we address the challenge of measuring fast subcellular motion by instead analyzing single-molecule data with spatiotemporal image correlation spectroscopy (STICS) with a focus on measurements of confined motion. Our SPT and STICS analysis of simulations of the fast diffusion of confined molecules shows that image blur affects both STICS and SPT, and we find biased diffusion rate measurements for STICS analysis in the limits of fast diffusion and tight confinement due to fitting STICS correlation functions to a Gaussian approximation. However, we determine that with STICS, it is possible to correctly interpret the motion that blurs single-molecule images without advanced illumination techniques or fast cameras. In particular, we present a method to overcome the bias due to image blur by properly estimating the width of the correlation function by directly calculating the correlation function variance instead of using the typical Gaussian fitting procedure. Our simulation results are validated by applying the STICS method to experimental measurements of fast, confined motion: we measure the diffusion of cytosolic mMaple3 in living Escherichia coli cells at 25 frames/s under continuous illumination to illustrate the utility of STICS in an experimental parameter regime for which in-frame motion prevents SPT and tight confinement of fast diffusion precludes stroboscopic illumination. Overall, our application of STICS to freely diffusing cytosolic protein in small cells extends the utility of single-molecule experiments to the regime of fast confined diffusion without requiring advanced

Magnetic resonance imaging and spectroscopy of combretastatin A4 prodrug-induced disruption of tumour perfusion and energetic status

OpenAIRE

1998-01-01

The effects of combretastatin A4 prodrug on perfusion and the levels of 31P metabolites in an implanted murine tumour were investigated for 3 h after drug treatment using nuclear magnetic resonance imaging (MRI) and spectroscopy (MRS). The area of regions of low signal intensity in spin-echo images of tumours increased slightly after treatment with the drug. These regions of low signal intensity corresponded to necrosis seen in histological sections, whereas the expanding regions surrounding ...

Monitoring of Antarctic moss ecosystems using a high spatial resolution imaging spectroscopy

Science.gov (United States)

Malenovsky, Zbynek; Lucieer, Arko; Robinson, Sharon; Harwin, Stephen; Turner, Darren; Veness, Tony

2013-04-01

The most abundant photosynthetically active plants growing along the rocky Antarctic shore are mosses of three species: Schistidium antarctici, Ceratodon purpureus, and Bryum pseudotriquetrum. Even though mosses are well adapted to the extreme climate conditions, their existence in Antarctica depends strongly on availability of liquid water from snowmelt during the short summer season. Recent changes in temperature, wind speed and stratospheric ozone are stimulating faster evaporation, which in turn influences moss growing rate, health state and abundance. This makes them an ideal bio-indicator of the Antarctic climate change. Very short growing season, lasting only about three months, requires a time efficient, easily deployable and spatially resolved method for monitoring the Antarctic moss beds. Ground and/or low-altitude airborne imaging spectroscopy (called also hyperspectral remote sensing) offers a fast and spatially explicit approach to investigate an actual spatial extent and physiological state of moss turfs. A dataset of ground-based spectral images was acquired with a mini-Hyperspec imaging spectrometer (Headwall Inc., the USA) during the Antarctic summer 2012 in the surroundings of the Australian Antarctic station Casey (Windmill Islands). The collection of high spatial resolution spectral images, with pixels about 2 cm in size containing from 162 up to 324 narrow spectral bands of wavelengths between 399 and 998 nm, was accompanied with point moss reflectance measurements recorded with the ASD HandHeld-2 spectroradiometer (Analytical Spectral Devices Inc., the USA). The first spectral analysis indicates significant differences in red-edge and near-infrared reflectance of differently watered moss patches. Contrary to high plants, where the Normalized Difference Vegetation Index (NDVI) represents an estimate of green biomass, NDVI of mosses indicates mainly the actual water content. Similarly to high plants, reflectance of visible wavelengths is

Evaluating minerals of environmental concern using spectroscopy

Science.gov (United States)

Swayze, G.A.; Clark, R.N.; Higgins, C.T.; Kokaly, R.F.; Livo, K. Eric; Hoefen, T.M.; Ong, C.; Kruse, F.A.

2006-01-01

Imaging spectroscopy has been successfully used to aid researchers in characterizing potential environmental impacts posed by acid-rock drainage, ore-processing dust on mangroves, and asbestos in serpentine mineral deposits and urban dust. Many of these applications synergistically combine field spectroscopy with remote sensing data, thus allowing more-precise data calibration, spectral analysis of the data, and verification of mapping. The increased accuracy makes these environmental evaluation tools efficient because they can be used to focus field work on those areas most critical to the research effort. The use of spectroscopy to evaluate minerals of environmental concern pushes current imaging spectrometer technology to its limits; we present laboratory results that indicate the direction for future designs of imaging spectrometers.

Easy measurement of diffusion coefficients of EGFP-tagged plasma membrane proteins using k-space Image Correlation Spectroscopy

DEFF Research Database (Denmark)

Christensen, Eva Arnspang; Koffman, Jennifer Skaarup; Marlar, Saw

2014-01-01

Lateral diffusion and compartmentalization of plasma membrane proteins are tightly regulated in cells and thus, studying these processes will reveal new insights to plasma membrane protein function and regulation. Recently, k-Space Image Correlation Spectroscopy (kICS)1 was developed to enable...... routine measurements of diffusion coefficients directly from images of fluorescently tagged plasma membrane proteins, that avoided systematic biases introduced by probe photophysics. Although the theoretical basis for the analysis is complex, the method can be implemented by nonexperts using a freely...... to the correlation function yields the diffusion coefficient. This paper provides a step-by-step guide to the image analysis and measurement of diffusion coefficients via kICS. First, a high frame rate image sequence of a fluorescently labeled plasma membrane protein is acquired using a fluorescence microscope Then...

THz QCL-based active imaging dedicated to non-destructive testing of composite materials used in aeronautics

Science.gov (United States)

Destic, F.; Petitjean, Y.; Massenot, S.; Mollier, J.-C.; Barbieri, S.

2010-08-01

This paper presents a CW raster-scanning THz imaging setup, used to perform Non-Destructive Testing of KevlarTMand carbon fibre samples. The setup uses a 2.5 THz Quantum Cascade Laser as a source. Delamination defect in a Kevlar sample was detected showing a sensitivity to laser polarization orientation. Detection of a break in a carbon/epoxy sample was also performed.

THz QCL-based active imaging dedicated to non-destructive testing of composite materials used in aeronautics

OpenAIRE

Destic, Fabien; Petitjean, Yoann; Massenot, Sébastien; Mollier, Jean-Claude; Barbieri, Stefano

2010-01-01

This paper presents a CW raster-scanning THz imaging setup, used to perform Non-Destructive Testing of KevlarTMand carbon fibre samples. The setup uses a 2.5 THz Quantum Cascade Laser as a source. Delamination defect in a Kevlar sample was detected showing a sensitivity to laser polarization orientation. Detection of a break in a carbon/epoxy sample was also performed.

Characterisation of historic plastics using terahertz time-domain spectroscopy and pulsed imaging.

Science.gov (United States)

Pastorelli, Gianluca; Trafela, Tanja; Taday, Phillip F; Portieri, Alessia; Lowe, David; Fukunaga, Kaori; Strlič, Matija

2012-05-01

Terahertz (THz) time-domain spectroscopy and 3D THz pulsed imaging have been explored with regard to polymer materials, both commodity and historic polymers. A systematic spectroscopic study of a wide range of different polymer materials showed significant differences in their spectra. Polyolefins and polystyrenes generally exhibit lower absorption than other examined polymers, various cellulose derivates, poly(vinyl chloride), poly(methyl methacrylate), polyamide, hard rubber and phenol formaldehyde resin, the last of these exhibiting the most intense absorption over the entire range, 0.15-4.2 THz. It was also examined how the presence of plasticisers in poly(vinyl chloride), the presence of fillers in polypropylene, and the degree of branching in polyethylene and polystyrene affect the spectra; inorganic fillers in polypropylene affected the absorption most. With 3D THz pulsed imaging, features in polymer objects were explored, appearing either as integral parts of the material (coatings and pores in foams) or as a consequence of physical deterioration (cracks, delamination). All of these features of various complexities can be successfully imaged in 3D. Terahertz technology is thus shown to have significant potential for both chemical and structural characterisation of polymers, which will be of interest to heritage science, but also to the polymer industry and development of analytical technologies in general.

Combining total internal reflection sum frequency spectroscopy spectral imaging and confocal fluorescence microscopy.

Science.gov (United States)

Allgeyer, Edward S; Sterling, Sarah M; Gunewardene, Mudalige S; Hess, Samuel T; Neivandt, David J; Mason, Michael D

2015-01-27

Understanding surface and interfacial lateral organization in material and biological systems is critical in nearly every field of science. The continued development of tools and techniques viable for elucidation of interfacial and surface information is therefore necessary to address new questions and further current investigations. Sum frequency spectroscopy (SFS) is a label-free, nonlinear optical technique with inherent surface specificity that can yield critical organizational information on interfacial species. Unfortunately, SFS provides no spatial information on a surface; small scale heterogeneities that may exist are averaged over the large areas typically probed. Over the past decade, this has begun to be addressed with the advent of SFS microscopy. Here we detail the construction and function of a total internal reflection (TIR) SFS spectral and confocal fluorescence imaging microscope directly amenable to surface investigations. This instrument combines, for the first time, sample scanning TIR-SFS imaging with confocal fluorescence microscopy.

Image Classification Workflow Using Machine Learning Methods

Science.gov (United States)

Christoffersen, M. S.; Roser, M.; Valadez-Vergara, R.; Fernández-Vega, J. A.; Pierce, S. A.; Arora, R.

2016-12-01

Recent increases in the availability and quality of remote sensing datasets have fueled an increasing number of scientifically significant discoveries based on land use classification and land use change analysis. However, much of the software made to work with remote sensing data products, specifically multispectral images, is commercial and often prohibitively expensive. The free to use solutions that are currently available come bundled up as small parts of much larger programs that are very susceptible to bugs and difficult to install and configure. What is needed is a compact, easy to use set of tools to perform land use analysis on multispectral images. To address this need, we have developed software using the Python programming language with the sole function of land use classification and land use change analysis. We chose Python to develop our software because it is relatively readable, has a large body of relevant third party libraries such as GDAL and Spectral Python, and is free to install and use on Windows, Linux, and Macintosh operating systems. In order to test our classification software, we performed a K-means unsupervised classification, Gaussian Maximum Likelihood supervised classification, and a Mahalanobis Distance based supervised classification. The images used for testing were three Landsat rasters of Austin, Texas with a spatial resolution of 60 meters for the years of 1984 and 1999, and 30 meters for the year 2015. The testing dataset was easily downloaded using the Earth Explorer application produced by the USGS. The software should be able to perform classification based on any set of multispectral rasters with little to no modification. Our software makes the ease of land use classification using commercial software available without an expensive license.

Study of human brain functions by functional magnetic resonance imaging (fMRI) and spectroscopy (fMRS)

International Nuclear Information System (INIS)

Jagannathan, N.R.

1998-01-01

Functional magnetic resonance imaging (fMRI) has become a powerful tool in the detection and assessment of cerebral pathophysiology and the regional mapping and characterization of cognitive processes such as motor skills, vision, language and memory. The results of the effect of motor cortex stimulation during repetitive hand squeezing task activation using in-vivo single voxel NMR spectroscopy carried out on normal volunteer subjects are presented

Multiplex Mass Spectrometric Imaging with Polarity Switching for Concurrent Acquisition of Positive and Negative Ion Images

Science.gov (United States)

Korte, Andrew R.; Lee, Young Jin

2013-06-01

We have recently developed a multiplex mass spectrometry imaging (MSI) method which incorporates high mass resolution imaging and MS/MS and MS3 imaging of several compounds in a single data acquisition utilizing a hybrid linear ion trap-Orbitrap mass spectrometer (Perdian and Lee, Anal. Chem. 82, 9393-9400, 2010). Here we extend this capability to obtain positive and negative ion MS and MS/MS spectra in a single MS imaging experiment through polarity switching within spiral steps of each raster step. This methodology was demonstrated for the analysis of various lipid class compounds in a section of mouse brain. This allows for simultaneous imaging of compounds that are readily ionized in positive mode (e.g., phosphatidylcholines and sphingomyelins) and those that are readily ionized in negative mode (e.g., sulfatides, phosphatidylinositols and phosphatidylserines). MS/MS imaging was also performed for a few compounds in both positive and negative ion mode within the same experimental set-up. Insufficient stabilization time for the Orbitrap high voltage leads to slight deviations in observed masses, but these deviations are systematic and were easily corrected with a two-point calibration to background ions.

Normal variation and long-term reproducibility of image-selected in vivo brain MR spectroscopy

International Nuclear Information System (INIS)

Smith, M.A.; Porter, D.; Lowry, M.; Ayton, V.; Twelves, C.J.; Richards, M.A.; Garlick, P.; Maisey, M.N.

1988-01-01

MR spectroscopy of P-31 in the brain was performed with a 1.5-T MR imaging and spectroscopy system using ISIS with a 5-cm cube. A standardized spectral processing routine was adopted, and the ratios of peak areas were measured. Localized brain spectra were obtained from 17 healthy subjects, of whom ten had undergone repeated investigations after a delay of at least 1 month. The variation among healthy subjects, expressed as the mean +- standard deviation, and the long-term reproducibility, expressed as the coefficient of variation, were as follows: for peak areas phosphocreatine (PCr) Pi 2.46 +- 0.72, 21.3%, for PCr/PME, 1.97 +- 0.62, 16.8%, for PCr/PDE, 0.51 +- 0.07, 8.1%; for PCr/Υ-adenosine triphosphate (ATP), 1.13 + 0.15, 6.3%; for PCr/α-ATP, 1.09 +- 0.21, 10.3%, for PCr/β-ATP, 1.66 +- .027, 10.4%; and for pH, 7.00 +- 0.05, 0.8%

Ion pair formation in the vacuum ultraviolet region of NO studied by negative ion imaging spectroscopy

International Nuclear Information System (INIS)

Hikosaka, Y.; Kaneyasu, T.; Shigemasa, E.

2007-01-01

The pair formation of positive and negative fragment ions has been studied in the vacuum ultraviolet region of NO, with negative ion imaging spectroscopy. The negative ion yield curve obtained in the photon energy region of 19-25 eV exhibits many structures which are absent from the photoabsorption spectrum in the same region. The partial yields and asymmetry parameters associated with the dissociations into individual ion pair limits have been extracted from the negative ion images observed. On the basis of these quantities, the assignments for the structures exhibited on the negative ion yield curve are given and the dynamical properties on the ion pair dissociation are discussed

An algorithm for improving the quality of structural images of turbid media in endoscopic optical coherence tomography

Science.gov (United States)

Potlov, A. Yu.; Frolov, S. V.; Proskurin, S. G.

2018-04-01

High-quality OCT structural images reconstruction algorithm for endoscopic optical coherence tomography of biological tissue is described. The key features of the presented algorithm are: (1) raster scanning and averaging of adjacent Ascans and pixels; (2) speckle level minimization. The described algorithm can be used in the gastroenterology, urology, gynecology, otorhinolaryngology for mucous membranes and skin diagnostics in vivo and in situ.

Modelling high-resolution electron microscopy based on core-loss spectroscopy

International Nuclear Information System (INIS)

Allen, L.J.; Findlay, S.D.; Oxley, M.P.; Witte, C.; Zaluzec, N.J.

2006-01-01

There are a number of factors affecting the formation of images based on core-loss spectroscopy in high-resolution electron microscopy. We demonstrate unambiguously the need to use a full nonlocal description of the effective core-loss interaction for experimental results obtained from high angular resolution electron channelling electron spectroscopy. The implications of this model are investigated for atomic resolution scanning transmission electron microscopy. Simulations are used to demonstrate that core-loss spectroscopy images formed using fine probes proposed for future microscopes can result in images that do not correspond visually with the structure that has led to their formation. In this context, we also examine the effect of varying detector geometries. The importance of the contribution to core-loss spectroscopy images by dechannelled or diffusely scattered electrons is reiterated here

Turbulence imaging and applications using beam emission spectroscopy on DIII-D (invited)

Science.gov (United States)

McKee, G. R.; Fenzi, C.; Fonck, R. J.; Jakubowski, M.

2003-03-01

Two-dimensional measurements of density fluctuations are obtained in the radial and poloidal plane of the DIII-D tokamak with the Beam Emission Spectroscopy (BES) diagnostic system. The goals are to visualize the spatial structure and time evolution of turbulent eddies, as well as to obtain the 2D statistical properties of turbulence. The measurements are obtained with an array of localized BES spatial channels configured to image a midplane region of the plasma. 32 channels have been deployed, each with a spatial resolution of about 1 cm in the radial and poloidal directions, thus providing measurements of turbulence in the wave number range 0movies have broad application to a wide variety of fundamental turbulence studies: imaging of the highly complex, nonlinear turbulent eddy interactions, measurement of the 2D correlation function, and S(kr,kθ) wave number spectra, and direct measurement of the equilibrium and time-dependent turbulence flow field. The time-dependent, two-dimensional turbulence velocity flow-field is obtained with time-delay-estimation techniques.

Diffuse reflectance spectroscopy and optical polarization imaging of in-vivo biological tissue

Science.gov (United States)

Mora-Núñez, A.; Castillejos, Y.; García-Torales, G.; Martínez-Ponce, G.

2013-11-01

A number of optical techniques have been reported in the scientific literature as accomplishable methodologies to diagnose diseases in biological tissue, for instance, diffuse reflectance spectroscopy (DRS) and optical polarization imaging (OPI). The skin is the largest organ in the body and consists of three primary layers, namely, the epidermis (the outermost layer exposed to the world), the dermis, and the hypodermis. The epidermis changes from to site to site, mainly because of difference in hydration. A lower water content increase light scattering and reduce the penetration depth of radiation. In this work, two hairless mice have been selected to evaluate their skin features by using DRS and OPI. Four areas of the specimen body were chosen to realize the comparison: back, abdomen, tail, and head. From DRS, it was possible to distinguish the skin nature because of different blood irrigation at dermis. In the other hand, OPI shows pseudo-depolarizing regions in the measured Mueller images related to a spatially varying propagation of the scattered light. This provides information about the cell size in the irradiated skin.

Assessment of illumination conditions in a single-pixel imaging configuration

Science.gov (United States)

Garoi, Florin; Udrea, Cristian; Damian, Cristian; Logofǎtu, Petre C.; Colţuc, Daniela

2016-12-01

Single-pixel imaging based on multiplexing is a promising technique, especially in applications where 2D detectors or raster scanning imaging are not readily applicable. With this method, Hadamard masks are projected on a spatial light modulator to encode an incident scene and a signal is recorded at the photodiode detector for each of these masks. Ultimately, the image is reconstructed on the computer by applying the inverse transform matrix. Thus, various algorithms were optimized and several spatial light modulators already characterized for such a task. This work analyses the imaging quality of such a single-pixel arrangement, when various illumination conditions are used. More precisely, the main comparison is made between coherent and incoherent ("white light") illumination and between two multiplexing methods, namely Hadamard and Scanning. The quality of the images is assessed by calculating their SNR, using two relations. The results show better images are obtained with "white light" illumination for the first method and coherent one for the second.

Field ion microscopy and imaging atom-probe mass spectroscopy of superconducting YBa2Cu3O7/sub -//sub x/

International Nuclear Information System (INIS)

Kellogg, G.L.; Brenner, S.S.

1987-01-01

The structure and composition of the superconducting oxide YBa 2 Cu 3 O/sub 7-//sub x/ have been examined in atomic detail by field ion microscopy and imaging atom-probe mass spectroscopy. The field ion samples were prepared from hot-pressed disks of the oxide powders. Atomic resolution images were obtained with either argon or hydrogen as the imaging gas. Individual layers of atoms were observed which could be field evaporated in a uniform, layer-by-layer manner. Imaging atom-probe analysis of the field ion tips indicated a metal composition which varied noticeably from sample to sample and an oxygen concentration which was consistently much too low

Laser-induced breakdown spectroscopy in industrial and security applications

International Nuclear Information System (INIS)

Bol'shakov, Alexander A.; Yoo, Jong H.; Liu Chunyi; Plumer, John R.; Russo, Richard E.

2010-01-01

Laser-induced breakdown spectroscopy (LIBS) offers rapid, localized chemical analysis of solid or liquid materials with high spatial resolution in lateral and depth profiling, without the need for sample preparation. Principal component analysis and partial least squares algorithms were applied to identify a variety of complex organic and inorganic samples. This work illustrates how LIBS analyzers can answer a multitude of real-world needs for rapid analysis, such as determination of lead in paint and children's toys, analysis of electronic and solder materials, quality control of fiberglass panels, discrimination of coffee beans from different vendors, and identification of generic versus brand-name drugs. Lateral and depth profiling was performed on children's toys and paint layers. Traditional one-element calibration or multivariate chemometric procedures were applied for elemental quantification, from single laser shot determination of metal traces at ∼10 μg/g to determination of halogens at 90 μg/g using 50-shot spectral accumulation. The effectiveness of LIBS for security applications was demonstrated in the field by testing the 50-m standoff LIBS rasterizing detector.

Mid-infrared fiber-coupled supercontinuum spectroscopic imaging using a tapered chalcogenide photonic crystal fiber

Science.gov (United States)

Rosenberg Petersen, Christian; Prtljaga, Nikola; Farries, Mark; Ward, Jon; Napier, Bruce; Lloyd, Gavin Rhys; Nallala, Jayakrupakar; Stone, Nick; Bang, Ole

2018-02-01

We present the first demonstration of mid-infrared spectroscopic imaging of human tissue using a fiber-coupled supercontinuum source spanning from 2-7.5 μm. The supercontinuum was generated in a tapered large mode area chalcogenide photonic crystal fiber in order to obtain broad bandwidth, high average power, and single-mode output for good imaging properties. Tissue imaging was demonstrated in transmission by raster scanning over a sub-mm region of paraffinized colon tissue on CaF2 substrate, and the signal was measured using a fiber-coupled grating spectrometer. This demonstration has shown that we can distinguish between epithelial and surrounding connective tissues within a paraffinized section of colon tissue by imaging at discrete wavelengths related to distinct chemical absorption features.

Photon event distribution sampling: an image formation technique for scanning microscopes that permits tracking of sub-diffraction particles with high spatial and temporal resolutions.

Science.gov (United States)

Larkin, J D; Publicover, N G; Sutko, J L

2011-01-01

In photon event distribution sampling, an image formation technique for scanning microscopes, the maximum likelihood position of origin of each detected photon is acquired as a data set rather than binning photons in pixels. Subsequently, an intensity-related probability density function describing the uncertainty associated with the photon position measurement is applied to each position and individual photon intensity distributions are summed to form an image. Compared to pixel-based images, photon event distribution sampling images exhibit increased signal-to-noise and comparable spatial resolution. Photon event distribution sampling is superior to pixel-based image formation in recognizing the presence of structured (non-random) photon distributions at low photon counts and permits use of non-raster scanning patterns. A photon event distribution sampling based method for localizing single particles derived from a multi-variate normal distribution is more precise than statistical (Gaussian) fitting to pixel-based images. Using the multi-variate normal distribution method, non-raster scanning and a typical confocal microscope, localizations with 8 nm precision were achieved at 10 ms sampling rates with acquisition of ~200 photons per frame. Single nanometre precision was obtained with a greater number of photons per frame. In summary, photon event distribution sampling provides an efficient way to form images when low numbers of photons are involved and permits particle tracking with confocal point-scanning microscopes with nanometre precision deep within specimens. © 2010 The Authors Journal of Microscopy © 2010 The Royal Microscopical Society.

The use of MR imaging and spectroscopy of the brain in children investigated for developmental delay: What is the most appropriate imaging strategy?

Energy Technology Data Exchange (ETDEWEB)

Griffiths, Paul D. [University of Sheffield, Academic Unit of Radiology, Sheffield (United Kingdom); Royal Hallamshire Hospital, Academic Unit of Radiology, Sheffield (United Kingdom); Batty, Ruth; Raghavan, Ashok; Connolly, Daniel J.A. [Sheffield Children' s Hospital Trust, Department of Radiology, Sheffield (United Kingdom); Warren, Daniel; Hart, Anthony [University of Sheffield, Academic Unit of Radiology, Sheffield (United Kingdom); Sharrard, Mark [Sheffield Children' s Hospital Trust, Department of Paediatrics, Sheffield (United Kingdom); Mordekar, Santosh R. [Sheffield Children' s Hospital Trust, Department of Paediatric Neurology, Sheffield (United Kingdom)

2011-09-15

Developmental delay is a common problem in paediatric practice and many children with developmental delay are referred for MR imaging. Our study was performed as part of a continuing audit process to optimise our MR protocol and case selection. We performed MR imaging and spectroscopy protocol on 157 children with developmental delay. We analysed the effect of these interventions by looking at the overall detection rate of relevant pathology and in particular subgroups of the children. 71% of the children had normal MR imaging, 10% had non-specific findings and 19% had specific abnormalities on MR imaging. The overall risk of having a specific structural abnormality with isolated developmental was 7.5% but if other neurological symptoms/signs were present the risk was 28%. Two children had abnormal spectroscopic findings, one with tuberous sclerosis and the other with absent brain creatine. Case selection for MR imaging is important in children with developmental delay. The best strategies for selecting children for MR are either; not performing MR with developmental delay in one domain only or performing MR with developmental delay in three or four domains or if there are other neurological features. (orig.)

The use of MR imaging and spectroscopy of the brain in children investigated for developmental delay: What is the most appropriate imaging strategy?

International Nuclear Information System (INIS)

Griffiths, Paul D.; Batty, Ruth; Raghavan, Ashok; Connolly, Daniel J.A.; Warren, Daniel; Hart, Anthony; Sharrard, Mark; Mordekar, Santosh R.

2011-01-01

Developmental delay is a common problem in paediatric practice and many children with developmental delay are referred for MR imaging. Our study was performed as part of a continuing audit process to optimise our MR protocol and case selection. We performed MR imaging and spectroscopy protocol on 157 children with developmental delay. We analysed the effect of these interventions by looking at the overall detection rate of relevant pathology and in particular subgroups of the children. 71% of the children had normal MR imaging, 10% had non-specific findings and 19% had specific abnormalities on MR imaging. The overall risk of having a specific structural abnormality with isolated developmental was 7.5% but if other neurological symptoms/signs were present the risk was 28%. Two children had abnormal spectroscopic findings, one with tuberous sclerosis and the other with absent brain creatine. Case selection for MR imaging is important in children with developmental delay. The best strategies for selecting children for MR are either; not performing MR with developmental delay in one domain only or performing MR with developmental delay in three or four domains or if there are other neurological features. (orig.)

Kalisphera: an analytical tool to reproduce the partial volume effect of spheres imaged in 3D

International Nuclear Information System (INIS)

Tengattini, Alessandro; Andò, Edward

2015-01-01

In experimental mechanics, where 3D imaging is having a profound effect, spheres are commonly adopted for their simplicity and for the ease of their modeling. In this contribution we develop an analytical tool, ‘kalisphera’, to produce 3D raster images of spheres including their partial volume effect. This allows us to evaluate the metrological performance of existing image-based measurement techniques (knowing a priori the ground truth). An advanced application of ‘kalisphera’ is developed here to identify and accurately characterize spheres in real 3D x-ray tomography images with the objective of improving trinarization and contact detection. The effect of the common experimental imperfections is assessed and the overall performance of the tool tested on real images. (paper)

Emerging technology: applications of Raman spectroscopy for prostate cancer.

Science.gov (United States)

Kast, Rachel E; Tucker, Stephanie C; Killian, Kevin; Trexler, Micaela; Honn, Kenneth V; Auner, Gregory W

2014-09-01

There is a need in prostate cancer diagnostics and research for a label-free imaging methodology that is nondestructive, rapid, objective, and uninfluenced by water. Raman spectroscopy provides a molecular signature, which can be scaled from micron-level regions of interest in cells to macroscopic areas of tissue. It can be used for applications ranging from in vivo or in vitro diagnostics to basic science laboratory testing. This work describes the fundamentals of Raman spectroscopy and complementary techniques including surface enhanced Raman scattering, resonance Raman spectroscopy, coherent anti-Stokes Raman spectroscopy, confocal Raman spectroscopy, stimulated Raman scattering, and spatially offset Raman spectroscopy. Clinical applications of Raman spectroscopy to prostate cancer will be discussed, including screening, biopsy, margin assessment, and monitoring of treatment efficacy. Laboratory applications including cell identification, culture monitoring, therapeutics development, and live imaging of cellular processes are discussed. Potential future avenues of research are described, with emphasis on multiplexing Raman spectroscopy with other modalities.

Remote defect imaging for plate-like structures based on the scanning laser source technique

Science.gov (United States)

Hayashi, Takahiro; Maeda, Atsuya; Nakao, Shogo

2018-04-01

In defect imaging with a scanning laser source technique, the use of a fixed receiver realizes stable measurements of flexural waves generated by laser at multiple rastering points. This study discussed the defect imaging by remote measurements using a laser Doppler vibrometer as a receiver. Narrow-band burst waves were generated by modulating laser pulse trains of a fiber laser to enhance signal to noise ratio in frequency domain. Averaging three images obtained at three different frequencies suppressed spurious distributions due to resonance. The experimental system equipped with these newly-devised means enabled us to visualize defects and adhesive objects in plate-like structures such as a plate with complex geometries and a branch pipe.

X-ray imaging and spectroscopy of individual cobalt nanoparticles using photoemission electron microscopy

International Nuclear Information System (INIS)

Fraile Rodriguez, A.; Nolting, F.; Bansmann, J.; Kleibert, A.; Heyderman, L.J.

2007-01-01

Photoemission electron microscopy (PEEM) was employed for X-ray imaging and absorption spectroscopy of individual cobalt nanoparticles as small as 8 nm grown using an arc ion cluster source. Using lithographic markers on the samples we were able to identify the same particles with PEEM and scanning electron microscopy. Significant variations in the shape of the X-ray absorption spectra between different cobalt particles were detected. Furthermore, our data suggest that distinctive spectral information about the individual particles, such as the quenching of oxide-related features and changes in the cobalt L 3 -edge intensity, cancel out and cannot be detected in the measurement over an ensemble of particles

High-resolution imaging and near-infrared spectroscopy of penumbral decay

Science.gov (United States)

Verma, M.; Denker, C.; Balthasar, H.; Kuckein, C.; Rezaei, R.; Sobotka, M.; Deng, N.; Wang, H.; Tritschler, A.; Collados, M.; Diercke, A.; Manrique, S. J. González

2018-06-01

Aims: Combining high-resolution spectropolarimetric and imaging data is key to understanding the decay process of sunspots as it allows us to scrutinize the velocity and magnetic fields of sunspots and their surroundings. Methods: Active region NOAA 12597 was observed on 2016 September 24 with the 1.5-meter GREGOR solar telescope using high-spatial-resolution imaging as well as imaging spectroscopy and near-infrared (NIR) spectropolarimetry. Horizontal proper motions were estimated with local correlation tracking, whereas line-of-sight (LOS) velocities were computed with spectral line fitting methods. The magnetic field properties were inferred with the "Stokes Inversions based on Response functions" (SIR) code for the Si I and Ca I NIR lines. Results: At the time of the GREGOR observations, the leading sunspot had two light bridges indicating the onset of its decay. One of the light bridges disappeared, and an elongated, dark umbral core at its edge appeared in a decaying penumbral sector facing the newly emerging flux. The flow and magnetic field properties of this penumbral sector exhibited weak Evershed flow, moat flow, and horizontal magnetic field. The penumbral gap adjacent to the elongated umbral core and the penumbra in that penumbral sector displayed LOS velocities similar to granulation. The separating polarities of a new flux system interacted with the leading and central part of the already established active region. As a consequence, the leading spot rotated 55° clockwise over 12 h. Conclusions: In the high-resolution observations of a decaying sunspot, the penumbral filaments facing the flux emergence site contained a darkened area resembling an umbral core filled with umbral dots. This umbral core had velocity and magnetic field properties similar to the sunspot umbra. This implies that the horizontal magnetic fields in the decaying penumbra became vertical as observed in flare-induced rapid penumbral decay, but on a very different time-scale.

Real-time imaging, spectroscopy, and structural investigation of cathodic plasma electrolytic oxidation of molybdenum

Energy Technology Data Exchange (ETDEWEB)

Stojadinović, Stevan, E-mail: sstevan@ff.bg.ac.rs; Tadić, Nenad; Šišović, Nikola M.; Vasilić, Rastko [Faculty of Physics, University of Belgrade, Studentski trg 12-16, 11000 Belgrade (Serbia)

2015-06-21

In this paper, the results of the investigation of cathodic plasma electrolytic oxidation (CPEO) of molybdenum at 160 V in a mixed solution of borax, water, and ethylene glycol are presented. Real-time imaging and optical emission spectroscopy were used for the characterization of the CPEO. During the process, vapor envelope is formed around the cathode and strong electric field within the envelope caused the generation of plasma discharges. The spectral line shape analysis of hydrogen Balmer line H{sub β} (486.13 nm) shows that plasma discharges are characterized by the electron number density of about 1.4 × 10{sup 21 }m{sup −3}. The electron temperature of 15 000 K was estimated by measuring molybdenum atomic lines intensity. Surface morphology, chemical, and phase composition of coatings formed by CPEO were characterized by scanning electron microscopy with energy dispersive x-ray spectroscopy and x-ray diffraction. The elemental components of CPEO coatings are Mo and O and the predominant crystalline form is MoO{sub 3}.

Diffusion-weighted imaging-guided MR spectroscopy in breast lesions using readout-segmented echo-planar imaging

Energy Technology Data Exchange (ETDEWEB)

Sun, Kun; Chai, Weimin; Zhan, Ying; Luo, Xianfu; Yan, Fuhua [Shanghai Jiao Tong University School of Medicine, Department of Radiology, Ruijin Hospital, Shanghai (China); Fu, Caixia [Siemens MRI Center, Siemens Shenzhen Magnetic Resonance Ltd, Shenzhen (China); Shen, Kunwei [Shanghai Jiao Tong University School of Medicine, Comprehensive Breast Health Center, Ruijin Hospital, Shanghai (China)

2016-06-15

To investigate the feasibility and effectiveness of diffusion-weighted imaging (DWI)-guided magnetic resonance spectroscopy (MRS) using readout-segmented echo-planar imaging (RS-EPI) to characterise breast lesions. A total of 258 patients with 258 suspicious breast lesions larger than 1 cm in diameter were examined using DWI-guided, single-voxel MRS with RS-EPI. The mean total choline-containing compound (tCho) signal-to-noise ratio (SNR) and concentration were used for the interpretation of MRS data. T-tests, χ{sup 2}-tests, receiver operating characteristic (ROC) curve analyses and Pearson correlations were conducted for statistical analysis. Histologically, 183 lesions were malignant, and 75 lesions were benign. Both the mean tCho SNR and concentration of malignant lesions were higher than those of benign lesions (6.23 ± 3.30 AU/mL vs. 1.26 ± 1.75 AU/mL and 3.17 ± 2.03 mmol/kg vs. 0.86 ± 0.83 mmol/kg, respectively; P < 0.0001). For a tCho SNR of 2.0 AU/mL and a concentration of 1.76 mmol/kg, the corresponding areas under the ROC curves were 0.93 and 0.90, respectively. The mean tCho SNR and concentration negatively correlated with apparent diffusion coefficients calculated from RS-EPI, with correlation coefficients of -0.54 and -0.48, respectively. DWI-guided MRS using RS-EPI is feasible and accurate for characterising breast lesions. (orig.)

Analysis of self-organized In(Ga)As quantum structures with the scanning transmission electron microscope; Analyse selbstorganisierter In(Ga)As-Quantenstrukturen mit dem Raster-Transmissionselektronenmikroskop

Energy Technology Data Exchange (ETDEWEB)

Sauerwald, Andres

2008-05-27

Aim of this thesis was to apply the analytical methods of the scanning transmission electron microscopy to the study of self-organized In(Ga)As quantum structures. With the imaging methods Z contrast and bright field (position resolutions in the subnanometer range) and especially with the possibilities of the quantitative chemical EELS analysis of the scanning transmission electron microscope (STEM) fundamental questions concerning morphology and chemical properties of self-organized quantum structures should be answered. By the high position resolution of the STEM among others essentail morphological and structural parameters in the growth behaviour of 'dot in a well' (DWell) structures and of vertically correlated quantum dots (QDs) could be analyzed. For the optimization of DWell structures samples were studied, the nominal InAs-QD growth position was directedly varied within the embedding InGaAs quantum wells. The STEM offers in connection with the EELS method a large potential for the chemical analysis of quantum structures. Studied was a sample series of self-organized InGaAs/GaAs structures on GaAs substrate, the stress of which was changed by varying the Ga content of the INGaAs material between 2.4 % and 4.3 %. [German] Ziel dieser Arbeit war es, die analytischen Methoden der Raster-Transmissionselektronenmikroskopie zur Untersuchung selbstorganisierter In(Ga)As-Quantenstrukturen anzuwenden. Mit den abbildenden Methoden Z-Kontrast und Hellfeld (Ortsaufloesungen im Subnanometerbereich) und insbesondere mit den Moeglichkeiten der quantitativen chemischen EELS-Analyse des Raster-Transmissionselektronenmikroskops (RTEMs) sollten grundsaetzliche Fragestellungen hinsichtlich der Morphologie und der chemischen Eigenschaften selbstorganisierter Quantenstrukturen beantwortet werden. Durch die hohe Ortsaufloesung des RTEMs konnten u.a. essentielle morphologische und strukturelle Parameter im Wachstumsverhalten von 'Dot in a Well

Method using in vivo quantitative spectroscopy to guide design and optimization of low-cost, compact clinical imaging devices: emulation and evaluation of multispectral imaging systems

Science.gov (United States)

Saager, Rolf B.; Baldado, Melissa L.; Rowland, Rebecca A.; Kelly, Kristen M.; Durkin, Anthony J.

2018-04-01

With recent proliferation in compact and/or low-cost clinical multispectral imaging approaches and commercially available components, questions remain whether they adequately capture the requisite spectral content of their applications. We present a method to emulate the spectral range and resolution of a variety of multispectral imagers, based on in-vivo data acquired from spatial frequency domain spectroscopy (SFDS). This approach simulates spectral responses over 400 to 1100 nm. Comparing emulated data with full SFDS spectra of in-vivo tissue affords the opportunity to evaluate whether the sparse spectral content of these imagers can (1) account for all sources of optical contrast present (completeness) and (2) robustly separate and quantify sources of optical contrast (crosstalk). We validate the approach over a range of tissue-simulating phantoms, comparing the SFDS-based emulated spectra against measurements from an independently characterized multispectral imager. Emulated results match the imager across all phantoms (<3 % absorption, <1 % reduced scattering). In-vivo test cases (burn wounds and photoaging) illustrate how SFDS can be used to evaluate different multispectral imagers. This approach provides an in-vivo measurement method to evaluate the performance of multispectral imagers specific to their targeted clinical applications and can assist in the design and optimization of new spectral imaging devices.

The effect of choosing three different C factor formulae derived from NDVI on a fully raster-based erosion modelling

Science.gov (United States)

Sulistyo, Bambang

2016-11-01

The research was aimed at studying the efect of choosing three different C factor formulae derived from NDVI on a fully raster-based erosion modelling of The USLE using remote sensing data and GIS technique. Methods applied was by analysing all factors affecting erosion such that all data were in the form of raster. Those data were R, K, LS, C and P factors. Monthly R factor was evaluated based on formula developed by Abdurachman. K factor was determined using modified formula used by Ministry of Forestry based on soil samples taken in the field. LS factor was derived from Digital Elevation Model. Three C factors used were all derived from NDVI and developed by Suriyaprasit (non-linear) and by Sulistyo (linear and non-linear). P factor was derived from the combination between slope data and landcover classification interpreted from Landsat 7 ETM+. Another analysis was the creation of map of Bulk Density used to convert erosion unit. To know the model accuracy, model validation was done by applying statistical analysis and by comparing Emodel with Eactual. A threshold value of ≥ 0.80 or ≥ 80% was chosen to justify. The research result showed that all Emodel using three formulae of C factors have coeeficient of correlation value of > 0.8. The results of analysis of variance showed that there was significantly difference between Emodel and Eactual when using C factor formula developed by Suriyaprasit and Sulistyo (non-linear). Among the three formulae, only Emodel using C factor formula developed by Sulistyo (linear) reached the accuracy of 81.13% while the other only 56.02% as developed by Sulistyo (nonlinear) and 4.70% as developed by Suriyaprasit, respectively.

Characterization of gold nanoparticle films: Rutherford backscattering spectroscopy, scanning electron microscopy with image analysis, and atomic force microscopy

Directory of Open Access Journals (Sweden)

Pia C. Lansåker

2014-10-01

Full Text Available Gold nanoparticle films are of interest in several branches of science and technology, and accurate sample characterization is needed but technically demanding. We prepared such films by DC magnetron sputtering and recorded their mass thickness by Rutherford backscattering spectroscopy. The geometric thickness dg—from the substrate to the tops of the nanoparticles—was obtained by scanning electron microscopy (SEM combined with image analysis as well as by atomic force microscopy (AFM. The various techniques yielded an internally consistent characterization of the films. In particular, very similar results for dg were obtained by SEM with image analysis and by AFM.

Graphene metamaterial spatial light modulator for infrared single pixel imaging.

Science.gov (United States)

Fan, Kebin; Suen, Jonathan Y; Padilla, Willie J

2017-10-16

High-resolution and hyperspectral imaging has long been a goal for multi-dimensional data fusion sensing applications - of interest for autonomous vehicles and environmental monitoring. In the long wave infrared regime this quest has been impeded by size, weight, power, and cost issues, especially as focal-plane array detector sizes increase. Here we propose and experimentally demonstrated a new approach based on a metamaterial graphene spatial light modulator (GSLM) for infrared single pixel imaging. A frequency-division multiplexing (FDM) imaging technique is designed and implemented, and relies entirely on the electronic reconfigurability of the GSLM. We compare our approach to the more common raster-scan method and directly show FDM image frame rates can be 64 times faster with no degradation of image quality. Our device and related imaging architecture are not restricted to the infrared regime, and may be scaled to other bands of the electromagnetic spectrum. The study presented here opens a new approach for fast and efficient single pixel imaging utilizing graphene metamaterials with novel acquisition strategies.

Brain oxygen saturation assessment in neonates using T2-prepared blood imaging of oxygen saturation and near-infrared spectroscopy

DEFF Research Database (Denmark)

Alderliesten, Thomas; De Vis, Jill B; Lemmers, Petra Ma

2017-01-01

saturation in the sagittal sinus (R(2 )= 0.49, p = 0.023), but no significant correlations could be demonstrated with frontal and whole brain cerebral blood flow. These results suggest that measuring oxygen saturation by T2-prepared blood imaging of oxygen saturation is feasible, even in neonates. Strong...... sinus. A strong linear relation was found between the oxygen saturation measured by magnetic resonance imaging and the oxygen saturation measured by near-infrared spectroscopy (R(2 )= 0.64, p ..., and magnetic resonance imaging measures of frontal cerebral blood flow, whole brain cerebral blood flow and venous oxygen saturation in the sagittal sinus (R(2 )= 0.71, 0.50, 0.65; p 

FTIR Spectroscopy on Basic Materials in THz Region for Compact FEL-Based Imaging

CERN Document Server

Cha, H J; Lee, B C; Park, S H

2005-01-01

We are making experiments on THz(terahertz) imaging using a compact high power FEL (free-electron laser) which is operating as a users facility at KAERI. The wavelength range of output pulses is 100~1200 μm, which corresponds to 0.3~3 THz in the frequency region. We should select the optimum wavelength for the constituents of specimens to realize the imaging based on the THz FEL. A FTIR (Fourier-transform infrared) spectrometer was modified to measure the optical constants of the specimens in THz region. A polyester film of which thickness is 3.7 μm was used as a beam splitter of the spectrometer. In the case of normal incidence, the transmittance of the film was measured to be more than 90%, and the estimated loss by absorption was approximately 2% at the FEL frequency of 3 THz. Several tens of nanometer-thick-silver was coated on the polyester film to balance both transmission and reflection of THz waves in the beam splitter. We investigated FTIR spectroscopy on air, vapor and liquid water...

Raman Spectroscopy for Homeland Security Applications

Directory of Open Access Journals (Sweden)

Gregory Mogilevsky

2012-01-01

Full Text Available Raman spectroscopy is an analytical technique with vast applications in the homeland security and defense arenas. The Raman effect is defined by the inelastic interaction of the incident laser with the analyte molecule’s vibrational modes, which can be exploited to detect and identify chemicals in various environments and for the detection of hazards in the field, at checkpoints, or in a forensic laboratory with no contact with the substance. A major source of error that overwhelms the Raman signal is fluorescence caused by the background and the sample matrix. Novel methods are being developed to enhance the Raman signal’s sensitivity and to reduce the effects of fluorescence by altering how the hazard material interacts with its environment and the incident laser. Basic Raman techniques applicable to homeland security applications include conventional (off-resonance Raman spectroscopy, surface-enhanced Raman spectroscopy (SERS, resonance Raman spectroscopy, and spatially or temporally offset Raman spectroscopy (SORS and TORS. Additional emerging Raman techniques, including remote Raman detection, Raman imaging, and Heterodyne imaging, are being developed to further enhance the Raman signal, mitigate fluorescence effects, and monitor hazards at a distance for use in homeland security and defense applications.

Optimization of Monochromated TEM for Ultimate Resolution Imaging and Ultrahigh Resolution Electron Energy Loss Spectroscopy

KAUST Repository

Lopatin, Sergei; Cheng, Bin; Liu, Wei-Ting; Tsai, Meng-Lin; He, Jr-Hau; Chuvilin, Andrey

2017-01-01

The performance of a monochromated transmission electron microscope with Wien type monochromator is optimized to achieve an extremely narrow energy spread of electron beam and an ultrahigh energy resolution with spectroscopy. The energy spread in the beam is improved by almost an order of magnitude as compared to specified values. The optimization involves both the monochromator and the electron energy loss detection system. We demonstrate boosted capability of optimized systems with respect to ultra-low loss EELS and sub-angstrom resolution imaging (in a combination with spherical aberration correction).

Optimization of Monochromated TEM for Ultimate Resolution Imaging and Ultrahigh Resolution Electron Energy Loss Spectroscopy

KAUST Repository

Lopatin, Sergei

2017-09-01

The performance of a monochromated transmission electron microscope with Wien type monochromator is optimized to achieve an extremely narrow energy spread of electron beam and an ultrahigh energy resolution with spectroscopy. The energy spread in the beam is improved by almost an order of magnitude as compared to specified values. The optimization involves both the monochromator and the electron energy loss detection system. We demonstrate boosted capability of optimized systems with respect to ultra-low loss EELS and sub-angstrom resolution imaging (in a combination with spherical aberration correction).

Direct Imaging and Spectroscopy of a Young Extrasolar Kuiper Belt in the Nearest OB Association

OpenAIRE

Currie, Thayne; Lisse, Carey M.; Kuchner, Marc J.; Madhusudhan, Nikku; Kenyon, Scott J.; Thalmann, Christian; Carson, Joseph; Debes, John H.

2015-01-01

We describe the discovery of a bright, young Kuiper belt-like debris disk around HD 115600, a $\\sim$ 1.4--1.5 M$_\\mathrm{\\odot}$, $\\sim$ 15 Myr old member of the Sco-Cen OB Association. Our H-band coronagraphy/integral field spectroscopy from the \\textit{Gemini Planet Imager} shows the ring has a (luminosity scaled) semi major axis of ($\\sim$ 22 AU) $\\sim$ 48 AU, similar to the current Kuiper belt. The disk appears to have neutral scattering dust, is eccentric (e $\\sim$ 0.1--0.2), and could b...

Superresolution and Fluorescence Dynamics Evidence Reveal That Intact Liposomes Do Not Cross the Human Skin Barrier

DEFF Research Database (Denmark)

Dreier, Jes; Sørensen, Jens A; Brewer, Jonathan R

2016-01-01

In this study we use the combination of super resolution optical microscopy and raster image correlation spectroscopy (RICS) to study the mechanism of action of liposomes as transdermal drug delivery systems in human skin. Two different compositions of liposomes were applied to newly excised human...... skin, a POPC liposome and a more flexible liposome containing the surfactant sodium cholate. Stimulated emission depletion microscopy (STED) images of intact skin and cryo-sections of skin treated with labeled liposomes were recorded displaying an optical resolution low enough to resolve the 100 nm...... liposomes in the skin. The images revealed that virtually none of the liposomes remained intact beneath the skin surface. RICS two color cross correlation diffusion measurements of double labeled liposomes confirmed these observations. Our results suggest that the liposomes do not act as carriers...

Infrared imaging spectroscopy and chemometric tools for in situ analysis of an imiquimod pharmaceutical preparation presented as cream

Science.gov (United States)

Carneiro, Renato Lajarim; Poppi, Ronei Jesus

2014-01-01

In the present work the homogeneity of a pharmaceutical formulation presented as a cream was studied using infrared imaging spectroscopy and chemometric methodologies such as principal component analysis (PCA) and multivariate curve resolution with alternating least squares (MCR-ALS). A cream formulation, presented as an emulsion, was prepared using imiquimod as the active pharmaceutical ingredient (API) and the excipients: water, vaseline, an emulsifier and a carboxylic acid in order to dissolve the API. After exposure at 45 °C during 3 months to perform accelerated stability test, the presence of some crystals was observed, indicating homogeneity problems in the formulation. PCA exploratory analysis showed that the crystal composition was different from the composition of the emulsion, since the score maps presented crystal structures in the emulsion. MCR-ALS estimated the spectra of the crystals and the emulsion. The crystals presented amine and C-H bands, suggesting that the precipitate was a salt formed by carboxylic acid and imiquimod. These results indicate the potential of infrared imaging spectroscopy in conjunction with chemometric methodologies as an analytical tool to ensure the quality of cream formulations in the pharmaceutical industry.

Solid-state NMR spectroscopy on complex biomolecules

NARCIS (Netherlands)

Renault, M.A.M.; Cukkemane, A.A.; Baldus, M.

2010-01-01

Biomolecular applications of NMR spectroscopy are often merely associated with soluble molecules or magnetic resonance imaging. However, since the late 1970s, solid-state NMR (ssNMR) spectroscopy has demonstrated its ability to provide atomic-level insight into complex biomolecular systems ranging

Thermoacoustic and thermoreflectance imaging of biased integrated circuits: Voltage and temperature maps

Energy Technology Data Exchange (ETDEWEB)

Hernández-Rosales, E.; Cedeño, E. [Gleb Wataghin Physics Institute, University of Campinas - Unicamp, 13083-859 Campinas, SP (Brazil); Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Legaria 694, Colonia Irrigación, CP 11500, México, DF (Mexico); Hernandez-Wong, J. [Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Legaria 694, Colonia Irrigación, CP 11500, México, DF (Mexico); CONACYT, México, DF, México (Mexico); Rojas-Trigos, J. B.; Marin, E. [Instituto Politécnico Nacional, Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Legaria 694, Colonia Irrigación, CP 11500, México, DF (Mexico); Gandra, F. C. G.; Mansanares, A. M., E-mail: manoel@ifi.unicamp.br [Gleb Wataghin Physics Institute, University of Campinas - Unicamp, 13083-859 Campinas, SP (Brazil)

2016-07-25

In this work a combined thermoacoustic and thermoreflectance set-up was designed for imaging biased microelectronic circuits. In particular, it was used with polycrystalline silicon resistive tracks grown on a monocrystalline Si substrate mounted on a test chip. Thermoreflectance images, obtained by scanning a probe laser beam on the sample surface, clearly show the regions periodically heated by Joule effect, which are associated to the electric current distribution in the circuit. The thermoacoustic signal, detected by a pyroelectric/piezoelectric sensor beneath the chip, also discloses the Joule contribution of the whole sample. However, additional information emerges when a non-modulated laser beam is focused on the sample surface in a raster scan mode allowing imaging of the sample. The distribution of this supplementary signal is related to the voltage distribution along the circuit.

Quality control and authentication of packaged integrated circuits using enhanced-spatial-resolution terahertz time-domain spectroscopy and imaging

Science.gov (United States)

Ahi, Kiarash; Shahbazmohamadi, Sina; Asadizanjani, Navid

2018-05-01

In this paper, a comprehensive set of techniques for quality control and authentication of packaged integrated circuits (IC) using terahertz (THz) time-domain spectroscopy (TDS) is developed. By material characterization, the presence of unexpected materials in counterfeit components is revealed. Blacktopping layers are detected using THz time-of-flight tomography, and thickness of hidden layers is measured. Sanded and contaminated components are detected by THz reflection-mode imaging. Differences between inside structures of counterfeit and authentic components are revealed through developing THz transmission imaging. For enabling accurate measurement of features by THz transmission imaging, a novel resolution enhancement technique (RET) has been developed. This RET is based on deconvolution of the THz image and the THz point spread function (PSF). The THz PSF is mathematically modeled through incorporating the spectrum of the THz imaging system, the axis of propagation of the beam, and the intensity extinction coefficient of the object into a Gaussian beam distribution. As a result of implementing this RET, the accuracy of the measurements on THz images has been improved from 2.4 mm to 0.1 mm and bond wires as small as 550 μm inside the packaging of the ICs are imaged.

Terahertz composite imaging method

Institute of Scientific and Technical Information of China (English)

QIAO Xiaoli; REN Jiaojiao; ZHANG Dandan; CAO Guohua; LI Lijuan; ZHANG Xinming

2017-01-01

In order to improve the imaging quality of terahertz(THz) spectroscopy, Terahertz Composite Imaging Method(TCIM) is proposed. The traditional methods of improving THz spectroscopy image quality are mainly from the aspects of de-noising and image enhancement. TCIM breaks through this limitation. A set of images, reconstructed in a single data collection, can be utilized to construct two kinds of composite images. One algorithm, called Function Superposition Imaging Algorithm(FSIA), is to construct a new gray image utilizing multiple gray images through a certain function. The features of the Region Of Interest (ROI) are more obvious after operating, and it has capability of merging ROIs in multiple images. The other, called Multi-characteristics Pseudo-color Imaging Algorithm(McPcIA), is to construct a pseudo-color image by combining multiple reconstructed gray images in a single data collection. The features of ROI are enhanced by color differences. Two algorithms can not only improve the contrast of ROIs, but also increase the amount of information resulting in analysis convenience. The experimental results show that TCIM is a simple and effective tool for THz spectroscopy image analysis.

Intracellular dynamics and fate of polystyrene nanoparticles in A549 Lung epithelial cells monitored by image (cross-) correlation spectroscopy and single particle tracking.

Science.gov (United States)

Deville, Sarah; Penjweini, Rozhin; Smisdom, Nick; Notelaers, Kristof; Nelissen, Inge; Hooyberghs, Jef; Ameloot, Marcel

2015-10-01

Novel insights in nanoparticle (NP) uptake routes of cells, their intracellular trafficking and subcellular targeting can be obtained through the investigation of their temporal and spatial behavior. In this work, we present the application of image (cross-) correlation spectroscopy (IC(C)S) and single particle tracking (SPT) to monitor the intracellular dynamics of polystyrene (PS) NPs in the human lung carcinoma A549 cell line. The ensemble kinetic behavior of NPs inside the cell was characterized by temporal and spatiotemporal image correlation spectroscopy (TICS and STICS). Moreover, a more direct interpretation of the diffusion and flow detected in the NP motion was obtained by SPT by monitoring individual NPs. Both techniques demonstrate that the PS NP transport in A549 cells is mainly dependent on microtubule-assisted transport. By applying spatiotemporal image cross-correlation spectroscopy (STICCS), the correlated motions of NPs with the early endosomes, late endosomes and lysosomes are identified. PS NPs were equally distributed among the endolysosomal compartment during the time interval of the experiments. The cotransport of the NPs with the lysosomes is significantly larger compared to the other cell organelles. In the present study we show that the complementarity of ICS-based techniques and SPT enables a consistent elaborate model of the complex behavior of NPs inside biological systems. Copyright © 2015 Elsevier B.V. All rights reserved.

In-situ Multimodal Imaging and Spectroscopy of Mg Electrodeposition at Electrode-Electrolyte Interfaces

Science.gov (United States)

Wu, Yimin A.; Yin, Zuwei; Farmand, Maryam; Yu, Young-Sang; Shapiro, David A.; Liao, Hong-Gang; Liang, Wen-I.; Chu, Ying-Hao; Zheng, Haimei

2017-02-01

We report the study of Mg cathodic electrochemical deposition on Ti and Au electrode using a multimodal approach by examining the sample area in-situ using liquid cell transmission electron microscopy (TEM), scanning transmission X-ray microscopy (STXM) and X-ray absorption spectroscopy (XAS). Magnesium Aluminum Chloride Complex was synthesized and utilized as electrolyte, where non-reversible features during in situ charging-discharging cycles were observed. During charging, a uniform Mg film was deposited on the electrode, which is consistent with the intrinsic non-dendritic nature of Mg deposition in Mg ion batteries. The Mg thin film was not dissolvable during the following discharge process. We found that such Mg thin film is hexacoordinated Mg compounds by in-situ STXM and XAS. This study provides insights on the non-reversibility issue and failure mechanism of Mg ion batteries. Also, our method provides a novel generic method to understand the in situ battery chemistry without any further sample processing, which can preserve the original nature of battery materials or electrodeposited materials. This multimodal in situ imaging and spectroscopy provides many opportunities to attack complex problems that span orders of magnitude in length and time scale, which can be applied to a broad range of the energy storage systems.

Monte Carlo simulation of X-ray imaging and spectroscopy experiments using quadric geometry and variance reduction techniques

Science.gov (United States)

Golosio, Bruno; Schoonjans, Tom; Brunetti, Antonio; Oliva, Piernicola; Masala, Giovanni Luca

2014-03-01

The simulation of X-ray imaging experiments is often performed using deterministic codes, which can be relatively fast and easy to use. However, such codes are generally not suitable for the simulation of even slightly more complex experimental conditions, involving, for instance, first-order or higher-order scattering, X-ray fluorescence emissions, or more complex geometries, particularly for experiments that combine spatial resolution with spectral information. In such cases, simulations are often performed using codes based on the Monte Carlo method. In a simple Monte Carlo approach, the interaction position of an X-ray photon and the state of the photon after an interaction are obtained simply according to the theoretical probability distributions. This approach may be quite inefficient because the final channels of interest may include only a limited region of space or photons produced by a rare interaction, e.g., fluorescent emission from elements with very low concentrations. In the field of X-ray fluorescence spectroscopy, this problem has been solved by combining the Monte Carlo method with variance reduction techniques, which can reduce the computation time by several orders of magnitude. In this work, we present a C++ code for the general simulation of X-ray imaging and spectroscopy experiments, based on the application of the Monte Carlo method in combination with variance reduction techniques, with a description of sample geometry based on quadric surfaces. We describe the benefits of the object-oriented approach in terms of code maintenance, the flexibility of the program for the simulation of different experimental conditions and the possibility of easily adding new modules. Sample applications in the fields of X-ray imaging and X-ray spectroscopy are discussed. Catalogue identifier: AERO_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AERO_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland

CW-THz vector spectroscopy and imaging system based on 1.55-µm fiber-optics.

Science.gov (United States)

Kim, Jae-Young; Song, Ho-Jin; Yaita, Makoto; Hirata, Akihiko; Ajito, Katsuhiro

2014-01-27

We present a continuous-wave terahertz (THz) vector spectroscopy and imaging system based on a 1.5-µm fiber optic uni-traveling-carrier photodiode and InGaAs photo-conductive receiver. Using electro-optic (EO) phase modulators for THz phase control with shortened optical paths, the system achieves fast vector measurement with effective phase stabilization. Dynamic ranges of 100 dB · Hz and 75 dB · Hz at 300 GHz and 1 THz, and phase stability of 1.5° per minute are obtained. With the simultaneous measurement of absorbance and relative permittivity, we demonstrate non-destructive analyses of pharmaceutical cocrystals inside tablets within a few minutes.

PROCESSING, CATALOGUING AND DISTRIBUTION OF UAS IMAGES IN NEAR REAL TIME

Directory of Open Access Journals (Sweden)

I. Runkel

2013-08-01

Full Text Available Why are UAS such a hype? UAS make the data capture flexible, fast and easy. For many applications this is more important than a perfect photogrammetric aerial image block. To ensure, that the advantage of a fast data capturing will be valid up to the end of the processing chain, all intermediate steps like data processing and data dissemination to the customer need to be flexible and fast as well. GEOSYSTEMS has established the whole processing workflow as server/client solution. This is the focus of the presentation. Depending on the image acquisition system the image data can be down linked during the flight to the data processing computer or it is stored on a mobile device and hooked up to the data processing computer after the flight campaign. The image project manager reads the data from the device and georeferences the images according to the position data. The meta data is converted into an ISO conform format and subsequently all georeferenced images are catalogued in the raster data management System ERDAS APOLLO. APOLLO provides the data, respectively the images as an OGC-conform services to the customer. Within seconds the UAV-images are ready to use for GIS application, image processing or direct interpretation via web applications – where ever you want. The whole processing chain is built in a generic manner. It can be adapted to a magnitude of applications. The UAV imageries can be processed and catalogued as single ortho imges or as image mosaic. Furthermore, image data of various cameras can be fusioned. By using WPS (web processing services image enhancement, image analysis workflows like change detection layers can be calculated and provided to the image analysts. The processing of the WPS runs direct on the raster data management server. The image analyst has no data and no software on his local computer. This workflow is proven to be fast, stable and accurate. It is designed to support time critical applications for security

Processing, Cataloguing and Distribution of Uas Images in Near Real Time

Science.gov (United States)

Runkel, I.

2013-08-01

Why are UAS such a hype? UAS make the data capture flexible, fast and easy. For many applications this is more important than a perfect photogrammetric aerial image block. To ensure, that the advantage of a fast data capturing will be valid up to the end of the processing chain, all intermediate steps like data processing and data dissemination to the customer need to be flexible and fast as well. GEOSYSTEMS has established the whole processing workflow as server/client solution. This is the focus of the presentation. Depending on the image acquisition system the image data can be down linked during the flight to the data processing computer or it is stored on a mobile device and hooked up to the data processing computer after the flight campaign. The image project manager reads the data from the device and georeferences the images according to the position data. The meta data is converted into an ISO conform format and subsequently all georeferenced images are catalogued in the raster data management System ERDAS APOLLO. APOLLO provides the data, respectively the images as an OGC-conform services to the customer. Within seconds the UAV-images are ready to use for GIS application, image processing or direct interpretation via web applications - where ever you want. The whole processing chain is built in a generic manner. It can be adapted to a magnitude of applications. The UAV imageries can be processed and catalogued as single ortho imges or as image mosaic. Furthermore, image data of various cameras can be fusioned. By using WPS (web processing services) image enhancement, image analysis workflows like change detection layers can be calculated and provided to the image analysts. The processing of the WPS runs direct on the raster data management server. The image analyst has no data and no software on his local computer. This workflow is proven to be fast, stable and accurate. It is designed to support time critical applications for security demands - the images

High-cadence Imaging and Imaging Spectroscopy at the GREGOR Solar Telescope—A Collaborative Research Environment for High-resolution Solar Physics

Science.gov (United States)

Denker, Carsten; Kuckein, Christoph; Verma, Meetu; González Manrique, Sergio J.; Diercke, Andrea; Enke, Harry; Klar, Jochen; Balthasar, Horst; Louis, Rohan E.; Dineva, Ekaterina

2018-05-01

In high-resolution solar physics, the volume and complexity of photometric, spectroscopic, and polarimetric ground-based data significantly increased in the last decade, reaching data acquisition rates of terabytes per hour. This is driven by the desire to capture fast processes on the Sun and the necessity for short exposure times “freezing” the atmospheric seeing, thus enabling ex post facto image restoration. Consequently, large-format and high-cadence detectors are nowadays used in solar observations to facilitate image restoration. Based on our experience during the “early science” phase with the 1.5 m GREGOR solar telescope (2014–2015) and the subsequent transition to routine observations in 2016, we describe data collection and data management tailored toward image restoration and imaging spectroscopy. We outline our approaches regarding data processing, analysis, and archiving for two of GREGOR’s post-focus instruments (see http://gregor.aip.de), i.e., the GREGOR Fabry–Pérot Interferometer (GFPI) and the newly installed High-Resolution Fast Imager (HiFI). The heterogeneous and complex nature of multidimensional data arising from high-resolution solar observations provides an intriguing but also a challenging example for “big data” in astronomy. The big data challenge has two aspects: (1) establishing a workflow for publishing the data for the whole community and beyond and (2) creating a collaborative research environment (CRE), where computationally intense data and postprocessing tools are colocated and collaborative work is enabled for scientists of multiple institutes. This requires either collaboration with a data center or frameworks and databases capable of dealing with huge data sets based on virtual observatory (VO) and other community standards and procedures.

On-line display used with cathode ray tube film measuring device

International Nuclear Information System (INIS)

Fortney, L.R.; Robertson, W.J.

1981-01-01

An improved display has been developed for use on our computer controlled measuring device (RIPPLE). The device features a television image of the film and a digital presentation on the same X, Y display. The television image is formed using a modified left and right raster scan which can cover 50% more area in the same time as the traditional raster

Time-Resolved Diffuse Optical Spectroscopy and Imaging Using Solid-State Detectors: Characteristics, Present Status, and Research Challenges.

Science.gov (United States)

Alayed, Mrwan; Deen, M Jamal

2017-09-14

Diffuse optical spectroscopy (DOS) and diffuse optical imaging (DOI) are emerging non-invasive imaging modalities that have wide spread potential applications in many fields, particularly for structural and functional imaging in medicine. In this article, we review time-resolved diffuse optical imaging (TR-DOI) systems using solid-state detectors with a special focus on Single-Photon Avalanche Diodes (SPADs) and Silicon Photomultipliers (SiPMs). These TR-DOI systems can be categorized into two types based on the operation mode of the detector (free-running or time-gated). For the TR-DOI prototypes, the physical concepts, main components, figures-of-merit of detectors, and evaluation parameters are described. The performance of TR-DOI prototypes is evaluated according to the parameters used in common protocols to test DOI systems particularly basic instrumental performance (BIP). In addition, the potential features of SPADs and SiPMs to improve TR-DOI systems and expand their applications in the foreseeable future are discussed. Lastly, research challenges and future developments for TR-DOI are discussed for each component in the prototype separately and also for the entire system.

First Simultaneous Visualization of SO2 and NO2 Plume Dispersions using Imaging Differential Optical Absorption Spectroscopy

International Nuclear Information System (INIS)

Lee, Hanlim; Hong, Hyunkee; Han, Kyungsoo; Noh, Youngmin; Kwon, Soonchul

2014-01-01

Imaging Differential Optical Absorption Spectroscopy (Imaging-DOAS) has been utilized in recent years to provide slant column density (SCD) distributions of several trace gas species in the plume. The present study introduces a new method using Imaging-DOAS data to determine two-dimensional plume structure from the plume emissions of power plant in conditions of negligible aerosol effects on radiative transfer within the plume. We demonstrates for the first time that two-dimensional distributions of sulfur dioxide (SO 2 ) and nitrogen dioxide (NO 2 ) in power plant emissions can be determined simultaneously in terms of SCD distribution. The SO 2 SCD values generally decreased with increasing distance from the stack and with distance from the center of the plume. Meanwhile, high NO 2 SCD was observed at locations several hundred meters away from the first stack due to the ratio change of NO to NO 2 in NOx concentration, attributed to the NO oxidation by O 3 . The results of this study show the capability of the Imaging-DOAS technique as a tool to estimate plume dimensions in power plant emissions

Functional Near-Infrared Spectroscopy Brain Imaging Investigation of Phonological Awareness and Passage Comprehension Abilities in Adult Recipients of Cochlear Implants

Science.gov (United States)

Bisconti, Silvia; Shulkin, Masha; Hu, Xiaosu; Basura, Gregory J.; Kileny, Paul R.; Kovelman, Ioulia

2016-01-01

Purpose: The aim of this study was to examine how the brains of individuals with cochlear implants (CIs) respond to spoken language tasks that underlie successful language acquisition and processing. Method: During functional near-infrared spectroscopy imaging, CI recipients with hearing impairment (n = 10, mean age: 52.7 ± 17.3 years) and…

Micro-raman and tip-enhanced raman spectroscopy of carbon allotropes

NARCIS (Netherlands)

Hoffmann, G.G.; With, de G.; Loos, J.

2008-01-01

Raman spectroscopic data are obtained on various carbon allotropes like diamond, amorphous carbon, graphite, graphene and single wall carbon nanotubes by micro-Raman spectroscopy, tip-enhanced Raman spectroscopy and tip-enhanced Raman spectroscopy imaging, and the potentials of these techniques for

Serial changes in metabolism and histology in the cold-injury trauma rat brain model. Proton magnetic resonance imaging and spectroscopy study

Energy Technology Data Exchange (ETDEWEB)

Kamada, Kyousuke; Houkin, Kiyohiro; Hida, Kazutoshi; Iwasaki, Yoshinobu; Abe, Hiroshi [Hokkaido Univ., Sapporo (Japan). School of Medicine

1995-01-01

The serial changes in metabolism and histology during the first 24 hours in the cold-injury trauma rat brain model were investigated by proton magnetic resonance (MR) imaging and high-resolution proton MR spectroscopy. Edema developed extensively via the corpus callosum in the ipsi- and contralateral hemispheres during observation as shown by gradually increased signal intensity on proton MR images. Proton MR spectroscopy showed increased levels of acetate (Ace), lactate (Lac), and glutamine (Glmi) 1 hour after lesion formation. The elevated Glmi level slightly decreased, the level of alanine (Ala) increased substantially, and that of N-acetyl-aspartate (NAA) decreased markedly after 24 hours. Increased Lac, Ace, and Ala might reflect anaerobic glycolysis associated with mitochondrial dysfunction, while decreased Glmi and NAA reveal brain tissue breakdown. The relationship between brain edema and tissue viability can be analyzed in detail using this simple traumatic model and MR techniques which will be useful in the development of therapeutic agents for brain injury. (author).

Overview of the Joint NASA ISRO Imaging Spectroscopy Science Campaign in India

Science.gov (United States)

Green, R. O.; Bhattacharya, B. K.; Eastwood, M. L.; Saxena, M.; Thompson, D. R.; Sadasivarao, B.

2016-12-01

In the period from December 2015 to March 2016 the Airborne Visible-Infrared Imaging Spectrometer Next Generation (AVIRIS-NG) was deployed to India for a joint NASA ISRO science campaign. This campaign was conceived to provide first of their kind high fidelity imaging spectroscopy measurements of a diverse set of Asian environments for science and applications research. During this campaign measurements were acquired for 57 high priority sites that have objectives spanning: snow/ice of the Himalaya; coastal habitats and water quality; mangrove forests; soils; dry and humid forests; hydrocarbon alteration; mineralogy; agriculture; urban materials; atmospheric properties; and calibration/validation. Measurements from the campaign have been processed to at-instrument spectral radiance and atmospherically corrected surface reflectance. New AVIRIS-NG algorithms for retrieval of vegetation canopy water and for estimation of the fractions of photosynthetic, non-photosynthetic vegetation have been tested and evaluated on these measurements. An inflight calibration validation experiment was performed on the 11thof December 2015 in Hyderabad to assess the spectral and radiometric calibration of AVIRIS-NG in the flight environment. We present an overview of the campaign, calibration and validation results, and initial science analysis of a subset of these unique and diverse data sets.

X-ray imaging crystal spectroscopy for use in plasma transport research

Science.gov (United States)

Reinke, M. L.; Podpaly, Y. A.; Bitter, M.; Hutchinson, I. H.; Rice, J. E.; Delgado-Aparicio, L.; Gao, C.; Greenwald, M.; Hill, K.; Howard, N. T.; Hubbard, A.; Hughes, J. W.; Pablant, N.; White, A. E.; Wolfe, S. M.

2012-11-01

This research describes advancements in the spectral analysis and error propagation techniques associated with x-ray imaging crystal spectroscopy (XICS) that have enabled this diagnostic to be used to accurately constrain particle, momentum, and heat transport studies in a tokamak for the first time. Doppler tomography techniques have been extended to include propagation of statistical uncertainty due to photon noise, the effect of non-uniform instrumental broadening as well as flux surface variations in impurity density. These methods have been deployed as a suite of modeling and analysis tools, written in interactive data language (IDL) and designed for general use on tokamaks. Its application to the Alcator C-Mod XICS is discussed, along with novel spectral and spatial calibration techniques. Example ion temperature and radial electric field profiles from recent I-mode plasmas are shown, and the impact of poloidally asymmetric impurity density and natural line broadening is discussed in the context of the planned ITER x-ray crystal spectrometer.

Very High Spectral Resolution Imaging Spectroscopy: the Fluorescence Explorer (FLEX) Mission

Science.gov (United States)

Moreno, Jose F.; Goulas, Yves; Huth, Andreas; Middleton, Elizabeth; Miglietta, Franco; Mohammed, Gina; Nedbal, Ladislav; Rascher, Uwe; Verhoef, Wouter; Drusch, Matthias

2016-01-01

The Fluorescence Explorer (FLEX) mission has been recently selected as the 8th Earth Explorer by the European Space Agency (ESA). It will be the first mission specifically designed to measure from space vegetation fluorescence emission, by making use of very high spectral resolution imaging spectroscopy techniques. Vegetation fluorescence is the best proxy to actual vegetation photosynthesis which can be measurable from space, allowing an improved quantification of vegetation carbon assimilation and vegetation stress conditions, thus having key relevance for global mapping of ecosystems dynamics and aspects related with agricultural production and food security. The FLEX mission carries the FLORIS spectrometer, with a spectral resolution in the range of 0.3 nm, and is designed to fly in tandem with Copernicus Sentinel-3, in order to provide all the necessary spectral / angular information to disentangle emitted fluorescence from reflected radiance, and to allow proper interpretation of the observed fluorescence spatial and temporal dynamics.

BIGRE: A LOW CROSS-TALK INTEGRAL FIELD UNIT TAILORED FOR EXTRASOLAR PLANETS IMAGING SPECTROSCOPY

International Nuclear Information System (INIS)

Antichi, Jacopo; Mouillet, David; Puget, Pascal; Beuzit, Jean-Luc; Dohlen, Kjetil; Gratton, Raffaele G.; Mesa, Dino; Claudi, Riccardo U.; Giro, Enrico; Boccaletti, Anthony

2009-01-01

Integral field spectroscopy represents a powerful technique for the detection and characterization of extrasolar planets through high-contrast imaging since it allows us to obtain simultaneously a large number of monochromatic images. These can be used to calibrate and then to reduce the impact of speckles, once their chromatic dependence is taken into account. The main concern in designing integral field spectrographs for high-contrast imaging is the impact of the diffraction effects and the noncommon path aberrations together with an efficient use of the detector pixels. We focus our attention on integral field spectrographs based on lenslet arrays, discussing the main features of these designs: the conditions of appropriate spatial and spectral sampling of the resulting spectrograph's slit functions and their related cross-talk terms when the system works at the diffraction limit. We present a new scheme for the integral field unit based on a dual-lenslet device (BIGRE), that solves some of the problems related to the classical Traitement Integral des Galaxies par l'Etude de leurs Rays (TIGER) design when used for such applications. We show that BIGRE provides much lower cross-talk signals than TIGER, allowing a more efficient use of the detector pixels and a considerable saving of the overall cost of a lenslet-based integral field spectrograph.

The CORONAS-Photon/TESIS experiment on EUV imaging spectroscopy of the Sun

Science.gov (United States)

Kuzin, S.; Zhitnik, I.; Bogachev, S.; Bugaenko, O.; Ignat'ev, A.; Mitrofanov, A.; Perzov, A.; Shestov, S.; Slemzin, V.; Suhodrev, N.

The new experiment TESIS is developent for russian CORONAS-Photon mission launch is planned on the end of 2007 The experiment is aimed on the study of activity of the Sun in the phases of minimum rise and maximum of 24 th cycle of Solar activity by the method of XUV imaging spectroscopy The method is based on the registration full-Sun monochromatic images with high spatial and temporal resolution The scientific tasks of the experiment are i Investigation dynamic processes in corona flares CME etc with high spatial up to 1 and temporal up to 1 second resolution ii determination of the main plasma parameters like plasma electron and ion density and temperature differential emission measure etc iii study of the processes of appearance and development large scale long-life magnetic structures in the solar corona study of the fluency of this structures on the global activity of the corona iv study of the mechanisms of energy accumulation and release in the solar flares and mechanisms of transformation of this energy into the heating of the plasma and kinematics energy To get the information for this studies the TESIS will register full-Sun images in narrow spectral intervals and the monochromatic lines of HeII SiXI FeXXI-FeXXIII MgXII ions The instrument includes 5 independent channels 2 telescopes for 304 and 132 A wide-field 2 5 degrees coronograph 280-330A and 8 42 A spectroheliographs The detailed description of the TESIS experiment and the instrument is presented

Easy monitoring of velocity fields in microfluidic devices using spatiotemporal image correlation spectroscopy.

Science.gov (United States)

Travagliati, Marco; Girardo, Salvatore; Pisignano, Dario; Beltram, Fabio; Cecchini, Marco

2013-09-03

Spatiotemporal image correlation spectroscopy (STICS) is a simple and powerful technique, well established as a tool to probe protein dynamics in cells. Recently, its potential as a tool to map velocity fields in lab-on-a-chip systems was discussed. However, the lack of studies on its performance has prevented its use for microfluidics applications. Here, we systematically and quantitatively explore STICS microvelocimetry in microfluidic devices. We exploit a simple experimental setup, based on a standard bright-field inverted microscope (no fluorescence required) and a high-fps camera, and apply STICS to map liquid flow in polydimethylsiloxane (PDMS) microchannels. Our data demonstrates optimal 2D velocimetry up to 10 mm/s flow and spatial resolution down to 5 μm.

The influence of Cs/Cc correction in analytical imaging and spectroscopy in scanning and transmission electron microscopy

International Nuclear Information System (INIS)

Zaluzec, Nestor J.

2015-01-01

Aberration correction in scanning/transmission electron microscopy (S/TEM) owes much to the efforts of a small dedicated group of innovators. Leading that frontier has been Prof. Harald Rose. To date his leadership and dynamic personality has spearheaded our ability to leave behind many of the limitations imposed by spherical aberration (C s ) in high resolution phase contrast imaging. Following shortly behind, has been the development of chromatic aberration correction (C c ) which augments those accomplishments. In this paper we will review and summarize how the combination of C s /C c technology enhances our ability to conduct hyperspectral imaging and spectroscopy in today's and future computationally mediated experiments in both thin as well as realistic specimens in vacuo and during in-situ/environmental experiments

Structural and dynamical aspects of skin studied by multiphoton excitation fluorescence microscopy-based methods

DEFF Research Database (Denmark)

Bloksgaard, Maria; Brewer, Jonathan R.; Bagatolli, Luis

2013-01-01

' parameters. Specifically, by applying these methods, spatially resolved maps of water dipolar relaxation (generalized polarization function using the 6-lauroyl-2-(N,N-dimethylamino)naphthale probe), activity of protons (fluorescence lifetime imaging using a proton sensitive fluorescence probe--2,7-bis-(2......-carboxyethyl)-5-(and-6)-carboxyfluorescein) and diffusion coefficients of distinct fluorescence probes (raster imaging correlation spectroscopy) can be obtained from different regions of the tissue. Comparative studies of different tissue strata, but also between equivalent regions of normal and abnormal......This mini-review reports on applications of particular multiphoton excitation microscopy-based methodologies employed in our laboratory to study skin. These approaches allow in-depth optical sectioning of the tissue, providing spatially resolved information on specific fluorescence probes...

A raster scanning power supply system for controlling relativistic heavy ion beams at the Bevalac Biomedical Facility

International Nuclear Information System (INIS)

Stover, G.; Nyman, M.; Halliwell, J.; Lutz, I.; Dwinell, R.

1987-03-01

A power supply system is currently being designed and constructed to sweep an 8.0 Tesla-meter relativistic heavy ion beam in a raster scanning mode for radiotherapy use. Two colinear dipole magnets with orthogonally oriented magnetic fields are driven by the system to produce a rectangular field (40 x 40 cm max.) with a uniform dose (+-2.5%) to a target volume 6 meters away. The ''fast'' horizontal scanning magnet is driven by a single power supply which in conjunction with a triac bridge network and a current regulated linear actuator will produce a 1200 cm/sec max. sweep rate. The ''slow'' (40 cm/sec) vertical scanning magnet will be controlled by dual current regulated linear actuators in a push-pull configuration. The scanner system can provide off-axis treatment profiles with large aspect ratios and unusual dimensions

Feature Tracking for High Speed AFM Imaging of Biopolymers.

Science.gov (United States)

Hartman, Brett; Andersson, Sean B

2018-03-31

The scanning speed of atomic force microscopes continues to advance with some current commercial microscopes achieving on the order of one frame per second and at least one reaching 10 frames per second. Despite the success of these instruments, even higher frame rates are needed with scan ranges larger than are currently achievable. Moreover, there is a significant installed base of slower instruments that would benefit from algorithmic approaches to increasing their frame rate without requiring significant hardware modifications. In this paper, we present an experimental demonstration of high speed scanning on an existing, non-high speed instrument, through the use of a feedback-based, feature-tracking algorithm that reduces imaging time by focusing on features of interest to reduce the total imaging area. Experiments on both circular and square gratings, as well as silicon steps and DNA strands show a reduction in imaging time by a factor of 3-12 over raster scanning, depending on the parameters chosen.

Scanning electron microscopy physics of image formation and microanalysis

CERN Document Server

Reimer, Ludwig

1985-01-01

The aim of this book is to outline the physics of image formation, electron­ specimen interactions, imaging modes, the interpretation of micrographs and the use of quantitative modes "in scanning electron microscopy (SEM). lt forms a counterpart to Transmission Electron Microscopy (Vol. 36 of this Springer Series in Optical Sciences) . The book evolved from lectures delivered at the University of Münster and from a German text entitled Raster-Elektronenmikroskopie (Springer-Verlag), published in collaboration with my colleague Gerhard Pfefferkorn. In the introductory chapter, the principles of the SEM and of electron­ specimen interactions are described, the most important imaging modes and their associated contrast are summarized, and general aspects of eiemental analysis by x-ray and Auger electron emission are discussed. The electron gun and electron optics are discussed in Chap. 2 in order to show how an electron probe of small diameter can be formed, how the elec­ tron beam can be blanked at high fre...

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

Science.gov (United States)

Hochberg, E. J.

2016-02-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

In situ oxidation state profiling of nickel hexacyanoferrate derivatized electrodes using line-imaging Raman spectroscopy and multivariate calibration

International Nuclear Information System (INIS)

Haight, S.M.; Schwartz, D.T.

1999-01-01

Metal hexacyanoferrate compounds show promise as electrochemically switchable ion exchange materials for use in the cleanup of radioactive wastes such as those found in storage basins and underground tanks at the Department of Energy's Hanford Nuclear Reservation. Reported is the use of line-imaging Raman spectroscopy for the in situ determination of oxidation state profiles in nickel hexacyanoferrate derivatized electrodes under potential control in an electrochemical cell. Line-imaging Raman spectroscopy is used to collect 256 contiguous Raman spectra every ∼5 microm from thin films (ca. 80 nm) formed by electrochemical derivatization of nickel electrodes. The cyanide stretching region of the Raman spectrum of the film is shown to be sensitive to iron oxidation state and is modeled by both univariate and multivariate correlations. Although both correlations fit the calibration set well, the multivariate (principle component regression or PCR) model's predictions of oxidation state are less sensitive to noise in the spectrum, yielding a much smoother oxidation state profile than the univariate model. Oxidation state profiles with spatial resolution of approximately 5 microm are shown for a nickel hexacyanoferrate derivatized electrode in reduced, intermediate, and oxidized states. In situ oxidation state profiles indicate that the 647.1 nm laser illumination photo-oxidizes the derivatized electrodes. This observation is confirmed using photoelectrochemical methods

apART: system for the acquisition, processing, archiving, and retrieval of digital images in an open, distributed imaging environment

Science.gov (United States)

Schneider, Uwe; Strack, Ruediger

1992-04-01

apART reflects the structure of an open, distributed environment. According to the general trend in the area of imaging, network-capable, general purpose workstations with capabilities of open system image communication and image input are used. Several heterogeneous components like CCD cameras, slide scanners, and image archives can be accessed. The system is driven by an object-oriented user interface where devices (image sources and destinations), operators (derived from a commercial image processing library), and images (of different data types) are managed and presented uniformly to the user. Browsing mechanisms are used to traverse devices, operators, and images. An audit trail mechanism is offered to record interactive operations on low-resolution image derivatives. These operations are processed off-line on the original image. Thus, the processing of extremely high-resolution raster images is possible, and the performance of resolution dependent operations is enhanced significantly during interaction. An object-oriented database system (APRIL), which can be browsed, is integrated into the system. Attribute retrieval is supported by the user interface. Other essential features of the system include: implementation on top of the X Window System (X11R4) and the OSF/Motif widget set; a SUN4 general purpose workstation, inclusive ethernet, magneto optical disc, etc., as the hardware platform for the user interface; complete graphical-interactive parametrization of all operators; support of different image interchange formats (GIF, TIFF, IIF, etc.); consideration of current IPI standard activities within ISO/IEC for further refinement and extensions.

Investigation of carbonates in the Sutter's Mill meteorite grains with hyperspectral infrared imaging micro-spectroscopy

Science.gov (United States)

Yesiltas, Mehmet

2018-04-01

Synchrotron-based high spatial resolution hyperspectral infrared imaging technique provides thousands of infrared spectra with high resolution, thus allowing us to acquire detailed spatial maps of chemical molecular structures for many grains in short times. Utilizing this technique, thousands of infrared spectra were analyzed at once instead of inspecting each spectrum separately. Sutter's Mill meteorite is a unique carbonaceous type meteorite with highly heterogeneous chemical composition. Multiple grains from the Sutter's Mill meteorite have been studied using this technique and the presence of both hydrous and anhydrous silicate minerals have been observed. It is observed that the carbonate mineralogy varies from simple to more complex carbonates even within a few microns in the meteorite grains. These variations, the type and distribution of calcite-like vs. dolomite-like carbonates are presented by means of hyperspectral FTIR imaging spectroscopy with high resolution. Various scenarios for the formation of different carbonate compositions in the Sutter's Mill parent body are discussed.

Efficient High-Dimensional Entanglement Imaging with a Compressive-Sensing Double-Pixel Camera

Directory of Open Access Journals (Sweden)

Gregory A. Howland

2013-02-01

Full Text Available We implement a double-pixel compressive-sensing camera to efficiently characterize, at high resolution, the spatially entangled fields that are produced by spontaneous parametric down-conversion. This technique leverages sparsity in spatial correlations between entangled photons to improve acquisition times over raster scanning by a scaling factor up to n^{2}/log⁡(n for n-dimensional images. We image at resolutions up to 1024 dimensions per detector and demonstrate a channel capacity of 8.4 bits per photon. By comparing the entangled photons’ classical mutual information in conjugate bases, we violate an entropic Einstein-Podolsky-Rosen separability criterion for all measured resolutions. More broadly, our result indicates that compressive sensing can be especially effective for higher-order measurements on correlated systems.

Tree species mapping in tropical forests using multi-temporal imaging spectroscopy: Wavelength adaptive spectral mixture analysis

Science.gov (United States)

Somers, B.; Asner, G. P.

2014-09-01

The use of imaging spectroscopy for florisic mapping of forests is complicated by the spectral similarity among co-existing species. Here we evaluated an alternative spectral unmixing strategy combining a time series of EO-1 Hyperion images and an automated feature selection in Multiple Endmember Spectral Mixture Analysis (MESMA). The temporal analysis provided a way to incorporate species phenology while feature selection indicated the best phenological time and best spectral feature set to optimize the separability between tree species. Instead of using the same set of spectral bands throughout the image which is the standard approach in MESMA, our modified Wavelength Adaptive Spectral Mixture Analysis (WASMA) approach allowed the spectral subsets to vary on a per pixel basis. As such we were able to optimize the spectral separability between the tree species present in each pixel. The potential of the new approach for floristic mapping of tree species in Hawaiian rainforests was quantitatively assessed using both simulated and actual hyperspectral image time-series. With a Cohen's Kappa coefficient of 0.65, WASMA provided a more accurate tree species map compared to conventional MESMA (Kappa = 0.54; p-value < 0.05. The flexible or adaptive use of band sets in WASMA provides an interesting avenue to address spectral similarities in complex vegetation canopies.

Challenges and opportunities in clinical translation of biomedical optical spectroscopy and imaging

Science.gov (United States)

Wilson, Brian C.; Jermyn, Michael; Leblond, Frederic

2018-03-01

Medical devices face many hurdles before they enter routine clinical practice to address unmet clinical needs. This is also the case for biomedical optical spectroscopy and imaging systems that are used here to illustrate the opportunities and challenges involved. Following initial concept, stages in clinical translation include instrument development, preclinical testing, clinical prototyping, clinical trials, prototype-to-product conversion, regulatory approval, commercialization, and finally clinical adoption and dissemination, all in the face of potentially competing technologies. Optical technologies face additional challenges from their being extremely diverse, often targeting entirely different diseases and having orders-of-magnitude differences in resolution and tissue penetration. However, these technologies can potentially address a wide variety of unmet clinical needs since they provide rich intrinsic biochemical and structural information, have high sensitivity and specificity for disease detection and localization, and are practical, safe (minimally invasive, nonionizing), and relatively affordable.

Molecular imaging of neutropilin-1 receptor using photoacoustic spectroscopy in breast tumors

Science.gov (United States)

Stantz, Keith M.; Cao, Minsong; Liu, Bo; Miller, Kathy D.; Guo, Lili

2010-02-01

Purpose: Our purpose is to develop and test a molecular probe that can detect the expression of neutropilin-1 receptor (NPR-1) in vivo using fluorescence imaging and photoacoustic spectroscopy. Introduction: NPR-1 is expressed on endothelial cells and some breast cancer cells, and binds to vascular endothelial growth factor VEGF165, a growth factor associated with pathological tumor angiogenesis. This receptor is coexpressed with VEGFR2 and shown to enhance the binding of VEGF165; therefore, it has the potential to be used as a marker of angiogenic activity and targeted for therapy. Material and Methods: A peptide specific to NPR-1 receptor was synthesized and conjugated to a NIR fluorochrome (IRDye800CW) and was intravenously injected into mice with breast tumors (MCF7VEGF). Probe kinetics was monitored in vivo via near infrared fluorescence (NIRF) within an optical imager for up to 72 hours within the tumor and compared to other organs (liver, muscle) for binding specificity. A multivariate fitting algorithm was used to spectrally deconvolve the IRDye800CW from endogenous hemoglobin signature (hemoglobin concentration and oxygen saturation). Results: Dynamics of the NIR fluorescence signal within the first hour after injection indicates specific binding compared to muscle, with an average tumor-to-muscle ration of 2.00 (+/- 0.27). Spectral analysis clearly indentified the presence of the NPR-1 probe. Based on calibration data, the average tumor concentration from both NIRF and PCT-S was measured to be ~200-300nM. Conclusion: These preliminary results show the capability of PCT to image an exogenous probe in vivo in addition to its hemoglobin state.

Raster-based outranking method: a new approach for municipal solid waste landfill (MSW) siting.

Science.gov (United States)

Hamzeh, Mohamad; Abbaspour, Rahim Ali; Davalou, Romina

2015-08-01

MSW landfill siting is a complicated process because it requires integration of several factors. In this paper, geographic information system (GIS) and multiple criteria decision analysis (MCDA) were combined to handle the municipal solid waste (MSW) landfill siting. For this purpose, first, 16 input data layers were prepared in GIS environment. Then, the exclusionary lands were eliminated and potentially suitable areas for the MSW disposal were identified. These potentially suitable areas, in an innovative approach, were further examined by deploying Preference Ranking Organization Method for Enrichment Evaluations (PROMETHEE) II and analytic network process (ANP), which are two of the most recent MCDA methods, in order to determine land suitability for landfilling. PROMETHEE II was used to determine a complete ranking of the alternatives, while ANP was employed to quantify the subjective judgments of evaluators as criteria weights. The resulting land suitability was reported on a grading scale of 1-5 from 1 to 5, which is the least to the most suitable area, respectively. Finally, three optimal sites were selected by taking into consideration the local conditions of 15 sites, which were candidates for MSW landfilling. Research findings show that the raster-based method yields effective results.

Elemental and mineralogical imaging of a weathered limestone rock by double-pulse micro-Laser-Induced Breakdown Spectroscopy

Science.gov (United States)

Senesi, Giorgio S.; Campanella, Beatrice; Grifoni, Emanuela; Legnaioli, Stefano; Lorenzetti, Giulia; Pagnotta, Stefano; Poggialini, Francesco; Palleschi, Vincenzo; De Pascale, Olga

2018-05-01

The present work aims to evaluate the alteration conditions of historical limestone rocks exposed to urban environment using the Laser-Induced Breakdown Spectroscopy (LIBS) technique. The approach proposed is based on the microscale three dimensional (3D) compositional imaging of the sample through double-pulse micro-Laser-Induced Breakdown Spectroscopy (DP-μLIBS) in conjunction with optical microscopy. DP-μLIBS allows to perform a quick and detailed in-depth analysis of the composition of the weathered artifact by creating a 'virtual thin section' (VTS) of the sample which can estimate the extent of the alteration processes occurred at the limestone surface. The DP-μLIBS analysis of these thin sections showed a reduction with depth of the elements (mainly Fe, Si and Na) originating from atmospheric dust, particulate deposition and the surrounding environment (due to the proximity of the sea), whereas, the LIBS signal of Ca increased in intensity from the black crust to the limestone underneath.

Bacterial and abiotic decay in waterlogged archaeological Picea abies (L.) Karst studied by confocal Raman imaging and ATR-FTIR spectroscopy

DEFF Research Database (Denmark)

Pedersen, Nanna Bjerregaard; Gierlinger, Notburga; Thygesen, Lisbeth Garbrecht

2015-01-01

Waterlogged archaeological Norway spruce [Picea abies (L.) Karst] poles were studied by means of confocal Raman imaging (CRI) and attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) analysis to determine lignin and polysaccharide composition and distribution in the cell......, and minor oxidation of the lignin polymer compared to recent reference material. This is evidence for abiotic decay in the course of waterlogging....

Method and apparatus for scanning x-ray tomography

International Nuclear Information System (INIS)

Albert, R.D.

1988-01-01

In a method of producing a tomographic image of a subject that includes the steps of generating X-rays at a moving origin point by directing a charged particle beam to a target surface, deflecting the charged particle beam to travel the origin point through a predetermined raster scan at the surface, detecting variations of X-ray intensity during the course of the raster scan at spaced apart detection points situated at the opposite side of the subject from the origin point, generating a first sequence of data values that is indicative of variations of X-ray intensity at a first of the detection points at successive times during the course of the raster scan and generating at least a second sequence of data values that is indicative of variations of X-ray intensity at a second of the detection points at successive times during the course of the same raster scan, the improvement is described comprising: combining successive individual data values of the first sequence that are generated by X-rays from successive particular locations in the raster scan with at least individual data values of the second sequence that are generated by X-rays from predetermined successive different locations in the same raster scan in order to produce a composite sequence of data values, and producing an image corresponding to at least a portion of the raster scan which depicts variations of the magnitude of successive data values of the composite sequence

DIRECT IMAGING AND SPECTROSCOPY OF A YOUNG EXTRASOLAR KUIPER BELT IN THE NEAREST OB ASSOCIATION

International Nuclear Information System (INIS)

Currie, Thayne; Lisse, Carey M.; Kuchner, Marc; Madhusudhan, Nikku; Kenyon, Scott J.; Thalmann, Christian; Carson, Joseph; Debes, John

2015-01-01

We describe the discovery of a bright, young Kuiper belt–like debris disk around HD 115600, a ∼1.4–1.5 M ⊙ , ∼15 Myr old member of the Sco–Cen OB Association. Our H-band coronagraphy/integral field spectroscopy from the Gemini Planet Imager shows the ring has a (luminosity-scaled) semimajor axis of (∼22 AU) ∼ 48 AU, similar to the current Kuiper belt. The disk appears to have neutral-scattering dust, is eccentric (e ∼ 0.1–0.2), and could be sculpted by analogs to the outer solar system planets. Spectroscopy of the disk ansae reveal a slightly blue to gray disk color, consistent with major Kuiper belt chemical constituents, where water ice is a very plausible dominant constituent. Besides being the first object discovered with the next generation of extreme adaptive optics systems (i.e., SCExAO, GPI, SPHERE), HD 115600's debris ring and planetary system provide a key reference point for the early evolution of the solar system, the structure, and composition of the Kuiper belt and the interaction between debris disks and planets

DIRECT IMAGING AND SPECTROSCOPY OF A YOUNG EXTRASOLAR KUIPER BELT IN THE NEAREST OB ASSOCIATION

Energy Technology Data Exchange (ETDEWEB)

Currie, Thayne [National Astronomical Observatory of Japan, Subaru Telescope, Hilo, HI (United States); Lisse, Carey M. [Applied Physics Laboratory, The Johns Hopkins University, Laurel, MD (United States); Kuchner, Marc [NASA Goddard Space Flight Center, Greenbelt, MD (United States); Madhusudhan, Nikku [Institute for Astronomy, University of Cambridge, Cambridge (United Kingdom); Kenyon, Scott J. [Harvard-Smithsonian Center for Astrophysics, Cambridge, MA (United States); Thalmann, Christian [ETH-Zurich, Zurich (Switzerland); Carson, Joseph [Department of Physics and Astronomy, The College of Charleston, Charleston, SC (United States); Debes, John [Space Telescope Science Institute, Baltimore, MD (United States)

2015-07-01

We describe the discovery of a bright, young Kuiper belt–like debris disk around HD 115600, a ∼1.4–1.5 M{sub ⊙}, ∼15 Myr old member of the Sco–Cen OB Association. Our H-band coronagraphy/integral field spectroscopy from the Gemini Planet Imager shows the ring has a (luminosity-scaled) semimajor axis of (∼22 AU) ∼ 48 AU, similar to the current Kuiper belt. The disk appears to have neutral-scattering dust, is eccentric (e ∼ 0.1–0.2), and could be sculpted by analogs to the outer solar system planets. Spectroscopy of the disk ansae reveal a slightly blue to gray disk color, consistent with major Kuiper belt chemical constituents, where water ice is a very plausible dominant constituent. Besides being the first object discovered with the next generation of extreme adaptive optics systems (i.e., SCExAO, GPI, SPHERE), HD 115600's debris ring and planetary system provide a key reference point for the early evolution of the solar system, the structure, and composition of the Kuiper belt and the interaction between debris disks and planets.

Acute necrotizing encephalopathy secondary to diphtheria, tetanus toxoid and whole-cell pertussis vaccination: diffusion-weighted imaging and proton MR spectroscopy findings

Energy Technology Data Exchange (ETDEWEB)

Aydin, Hale; Ozgul, Esra; Agildere, Ahmet Muhtesem [Baskent University Hospital, Department of Radiology, Ankara (Turkey)

2010-07-15

We present a previously healthy 6-month-old boy who was admitted to our hospital with lethargy, hypotonia and focal clonic seizures 6 days following diptheria, tetanus toxoid and whole-cell pertussis vaccination. A diagnosis of acute necrotising encephalopathy was made with the aid of MRI, including diffusion-weighted imaging and proton MR spectroscopy. (orig.)

Acute necrotizing encephalopathy secondary to diphtheria, tetanus toxoid and whole-cell pertussis vaccination: diffusion-weighted imaging and proton MR spectroscopy findings

International Nuclear Information System (INIS)

Aydin, Hale; Ozgul, Esra; Agildere, Ahmet Muhtesem

2010-01-01

We present a previously healthy 6-month-old boy who was admitted to our hospital with lethargy, hypotonia and focal clonic seizures 6 days following diptheria, tetanus toxoid and whole-cell pertussis vaccination. A diagnosis of acute necrotising encephalopathy was made with the aid of MRI, including diffusion-weighted imaging and proton MR spectroscopy. (orig.)

Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging

Directory of Open Access Journals (Sweden)

Millar A Harvey

2011-07-01

Full Text Available Abstract Matrix-Assisted Laser Desorption/Ionisation (MALDI mass spectrometry imaging (MSI uses the power of high mass resolution time of flight (ToF mass spectrometry coupled to the raster of lasers shots across the cut surface of tissues to provide new insights into the spatial distribution of biomolecules within biological tissues. The history of this technique in animals and plants is considered and the potential for analysis of proteins by this technique in plants is discussed. Protein biomarker identification from MALDI-MSI is a challenge and a number of different approaches to address this bottleneck are discussed. The technical considerations needed for MALDI-MSI are reviewed and these are presented alongside examples from our own work and a protocol for MALDI-MSI of proteins in plant samples.

Image-based spectroscopy for environmental monitoring

Science.gov (United States)

Bachmakov, Eduard; Molina, Carolyn; Wynne, Rosalind

2014-03-01

An image-processing algorithm for use with a nano-featured spectrometer chemical agent detection configuration is presented. The spectrometer chip acquired from Nano-Optic DevicesTM can reduce the size of the spectrometer down to a coin. The nanospectrometer chip was aligned with a 635nm laser source, objective lenses, and a CCD camera. The images from a nanospectrometer chip were collected and compared to reference spectra. Random background noise contributions were isolated and removed from the diffraction pattern image analysis via a threshold filter. Results are provided for the image-based detection of the diffraction pattern produced by the nanospectrometer. The featured PCF spectrometer has the potential to measure optical absorption spectra in order to detect trace amounts of contaminants. MATLAB tools allow for implementation of intelligent, automatic detection of the relevant sub-patterns in the diffraction patterns and subsequent extraction of the parameters using region-detection algorithms such as the generalized Hough transform, which detects specific shapes within the image. This transform is a method for detecting curves by exploiting the duality between points on a curve and parameters of that curve. By employing this imageprocessing technique, future sensor systems will benefit from new applications such as unsupervised environmental monitoring of air or water quality.

Imaging Brain Function with Functional Near-Infrared Spectroscopy in Unconstrained Environments

Directory of Open Access Journals (Sweden)

Joana B. Balardin

2017-05-01

Full Text Available Assessing the neural correlates of motor and cognitive processes under naturalistic experimentation is challenging due to the movement constraints of traditional brain imaging technologies. The recent advent of portable technologies that are less sensitive to motion artifacts such as Functional Near Infrared Spectroscopy (fNIRS have been made possible the study of brain function in freely-moving participants. In this paper, we describe a series of proof-of-concept experiments examining the potential of fNIRS in assessing the neural correlates of cognitive and motor processes in unconstrained environments. We show illustrative applications for practicing a sport (i.e., table tennis, playing a musical instrument (i.e., piano and violin alone or in duo and performing daily activities for many hours (i.e., continuous monitoring. Our results expand upon previous research on the feasibility and robustness of fNIRS to monitor brain hemodynamic changes in different real life settings. We believe that these preliminary results showing the flexibility and robustness of fNIRS measurements may contribute by inspiring future work in the field of applied neuroscience.

Impact of detector efficiency and energy resolution on gamma-ray background rejection in mobile spectroscopy and imaging systems

Energy Technology Data Exchange (ETDEWEB)

Aucott, Timothy J., E-mail: Timothy.Aucott@SRS.gov [Lawrence Berkeley National Laboratory, Nuclear Science Division, Berkeley, CA (United States); Bandstra, Mark S. [Lawrence Berkeley National Laboratory, Nuclear Science Division, Berkeley, CA (United States); Negut, Victor; Curtis, Joseph C. [University of California, Berkeley, Department of Nuclear Engineering, Berkeley, CA (United States); Meyer, Ross E.; Chivers, Daniel H. [Lawrence Berkeley National Laboratory, Nuclear Science Division, Berkeley, CA (United States); Vetter, Kai [University of California, Berkeley, Department of Nuclear Engineering, Berkeley, CA (United States); Lawrence Berkeley National Laboratory, Nuclear Science Division, Berkeley, CA (United States)

2015-07-21

The presence of gamma-ray background significantly reduces detection sensitivity when searching for radioactive sources in the field, and the systematic variability in the background will limit the size and energy resolution of systems that can be used effectively. An extensive survey of the background was performed using both sodium iodide and high-purity germanium. By using a bivariate negative binomial model for the measured counts, these measurements can be resampled to simulate the performance of a detector array of arbitrary size and resolution. The response of the system as it moved past a stationary source was modeled for spectroscopic and coded aperture imaging algorithms and used for source injection into the background. The performance of both techniques is shown for various sizes and resolutions, as well as the relative performance for sodium iodide and germanium. It was found that at smaller detector sizes or better energy resolution, spectroscopy has higher detection sensitivity than imaging, while imaging is better suited to larger or poorer resolution detectors.

Size effects in van der Waals clusters studied by spin and angle-resolved electron spectroscopy and multi-coincidence ion imaging

International Nuclear Information System (INIS)

Rolles, D; Pesic, Z D; Zhang, H; Bilodeau, R C; Bozek, J D; Berrah, N

2007-01-01

We have studied the valence and inner-shell photoionization of free rare-gas clusters by means of angle and spin resolved photoelectron spectroscopy and momentum resolving electron-multi-ion coincidence spectroscopy. The electron measurements probe the evolution of the photoelectron angular distribution and spin polarization parameters as a function of photon energy and cluster size, and reveal a strong cluster size dependence of the photoelectron angular distributions in certain photon energy regions. In contrast, the spin polarization parameter of the cluster photoelectrons is found to be very close to the atomic value for all covered photon energies and cluster sizes. The ion imaging measurements, which probe the fragmentation dynamics of multiply charged van der Waals clusters, also exhibit a pronounced cluster size dependence

Imaging spectroscopy using embedded diffractive optical arrays

Science.gov (United States)

Hinnrichs, Michele; Hinnrichs, Bradford

2017-09-01

Pacific Advanced Technology (PAT) has developed an infrared hyperspectral camera based on diffractive optic arrays. This approach to hyperspectral imaging has been demonstrated in all three infrared bands SWIR, MWIR and LWIR. The hyperspectral optical system has been integrated into the cold-shield of the sensor enabling the small size and weight of this infrared hyperspectral sensor. This new and innovative approach to an infrared hyperspectral imaging spectrometer uses micro-optics that are made up of an area array of diffractive optical elements where each element is tuned to image a different spectral region on a common focal plane array. The lenslet array is embedded in the cold-shield of the sensor and actuated with a miniature piezo-electric motor. This approach enables rapid infrared spectral imaging with multiple spectral images collected and processed simultaneously each frame of the camera. This paper will present our optical mechanical design approach which results in an infrared hyper-spectral imaging system that is small enough for a payload on a small satellite, mini-UAV, commercial quadcopter or man portable. Also, an application of how this spectral imaging technology can easily be used to quantify the mass and volume flow rates of hydrocarbon gases. The diffractive optical elements used in the lenslet array are blazed gratings where each lenslet is tuned for a different spectral bandpass. The lenslets are configured in an area array placed a few millimeters above the focal plane and embedded in the cold-shield to reduce the background signal normally associated with the optics. The detector array is divided into sub-images covered by each lenslet. We have developed various systems using a different number of lenslets in the area array. Depending on the size of the focal plane and the diameter of the lenslet array will determine the number of simultaneous different spectral images collected each frame of the camera. A 2 x 2 lenslet array will image

Functional imaging for brain tumors (perfusion, DTI and MR spectroscopy)

International Nuclear Information System (INIS)

Essig, M.; Giesel, F.; Stieltjes, B.; Weber, M.A.

2007-01-01

This contribution considers the possibilities involved with using functional methods in magnetic resonance imaging (MRI) diagnostics for brain tumors. Of the functional methods available, we discuss perfusion MRI (PWI), diffusion MRI (DWI and DTI) and MR spectroscopy (H-MRS). In cases of brain tumor, PWI aids in grading and better differentiation in diagnostics as well as for pre-therapeutic planning. In addition, the course of treatment, both after chemo- as well as radiotherapy in combination with surgical treatment, can be optimized. PWI allows better estimates of biological activity and aggressiveness in low grade brain tumors, and in the case of WHO grade II astrocytoma showing anaplastically transformed tumor areas, allows more rapid visualization and a better prediction of the course of the disease than conventional MRI diagnostics. Diffusion MRI, due to the directional dependence of the diffusion, can illustrate the course and direction of the nerve fibers, as well as reconstructing the nerve tracts in the cerebrum, pons and cerebellum 3-dimensionally. Diffusion imaging can be used for describing brain tumors, for evaluating contralateral involvement and the course of the nerve fibers near the tumor. Due to its operator dependence, DTI based fiber tracking for defining risk structures is controversial. DWI can also not differentiate accurately between cystic and necrotic brain tumors, or between metastases and brain abscesses. H-MRS provides information on cell membrane metabolism, neuronal integrity and the function of neuronal structures, energy metabolism and the formation of tumors and brain tissue necroses. Diagnostic problems such as the differentiation between neoplastic and non-neoplastic lesions, grading cerebral glioma and distinguishing between primary brain tumors and metastases can be resolved. An additional contribution will discuss the control of the course of glial tumors after radiotherapy. (orig.)

Method of Storing Raster Image in Run Lengths Having Variable Numbers of Bytes and Medium with Raster Image Thus Stored

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The invention implements a run-length file format with improved space-sav qualities. The file starts with a header in ASCII format and includes information such as...

Investigation of Fat Metabolism during Antiobesity Interventions by Magnetic Resonance Imaging and Spectroscopy

Directory of Open Access Journals (Sweden)

Arunima Pola

2014-01-01

Full Text Available The focus of current treatments for obesity is to reduce the body weight or visceral fat, which requires longer duration to show effect. In this study, we investigated the short-term changes in fat metabolism in liver, abdomen, and skeletal muscle during antiobesity interventions including Sibutramine treatment and diet restriction in obese rats using magnetic resonance imaging, magnetic resonance spectroscopy, and blood chemistry. Sibutramine is an antiobesity drug that results in weight loss by increasing satiety and energy expenditure. The Sibutramine-treated rats showed reduction of liver fat and intramyocellular lipids on day 3. The triglycerides (TG decreased on day 1 and 3 compared to baseline (day 0. The early response/nonresponse in different fat depots will permit optimization of treatment for better clinical outcome rather than staying with a drug for longer periods.

AXSIS: Exploring the frontiers in attosecond X-ray science, imaging and spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Kärtner, F.X., E-mail: franz.kaertner@cfel.de [Center for Free-Electron Laser Science, Hamburg (Germany); Institute for Experimental Physics, University of Hamburg, Hamburg (Germany); The Hamburg Center for Ultrafast Imaging, Hamburg (Germany); DESY, Hamburg (Germany); Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA (United States); Ahr, F. [Center for Free-Electron Laser Science, Hamburg (Germany); Institute for Experimental Physics, University of Hamburg, Hamburg (Germany); DESY, Hamburg (Germany); Max Planck Institute for the Structure and Dynamics of Matter, Hamburg (Germany); Calendron, A.-L. [Center for Free-Electron Laser Science, Hamburg (Germany); Institute for Experimental Physics, University of Hamburg, Hamburg (Germany); The Hamburg Center for Ultrafast Imaging, Hamburg (Germany); DESY, Hamburg (Germany); Çankaya, H. [Center for Free-Electron Laser Science, Hamburg (Germany); The Hamburg Center for Ultrafast Imaging, Hamburg (Germany); DESY, Hamburg (Germany); Carbajo, S. [Center for Free-Electron Laser Science, Hamburg (Germany); Institute for Experimental Physics, University of Hamburg, Hamburg (Germany); DESY, Hamburg (Germany); Chang, G.; Cirmi, G. [Center for Free-Electron Laser Science, Hamburg (Germany); The Hamburg Center for Ultrafast Imaging, Hamburg (Germany); DESY, Hamburg (Germany); Dörner, K. [Center for Free-Electron Laser Science, Hamburg (Germany); DESY, Hamburg (Germany); Dorda, U. [DESY, Hamburg (Germany); Fallahi, A. [Center for Free-Electron Laser Science, Hamburg (Germany); DESY, Hamburg (Germany); Hartin, A. [Center for Free-Electron Laser Science, Hamburg (Germany); Institute for Experimental Physics, University of Hamburg, Hamburg (Germany); DESY, Hamburg (Germany); Hemmer, M. [Center for Free-Electron Laser Science, Hamburg (Germany); DESY, Hamburg (Germany); and others

2016-09-01

X-ray crystallography is one of the main methods to determine atomic-resolution 3D images of the whole spectrum of molecules ranging from small inorganic clusters to large protein complexes consisting of hundred-thousands of atoms that constitute the macromolecular machinery of life. Life is not static, and unravelling the structure and dynamics of the most important reactions in chemistry and biology is essential to uncover their mechanism. Many of these reactions, including photosynthesis which drives our biosphere, are light induced and occur on ultrafast timescales. These have been studied with high time resolution primarily by optical spectroscopy, enabled by ultrafast laser technology, but they reduce the vast complexity of the process to a few reaction coordinates. In the AXSIS project at CFEL in Hamburg, funded by the European Research Council, we develop the new method of attosecond serial X-ray crystallography and spectroscopy, to give a full description of ultrafast processes atomically resolved in real space and on the electronic energy landscape, from co-measurement of X-ray and optical spectra, and X-ray diffraction. This technique will revolutionize our understanding of structure and function at the atomic and molecular level and thereby unravel fundamental processes in chemistry and biology like energy conversion processes. For that purpose, we develop a compact, fully coherent, THz-driven attosecond X-ray source based on coherent inverse Compton scattering off a free-electron crystal, to outrun radiation damage effects due to the necessary high X-ray irradiance required to acquire diffraction signals. This highly synergistic project starts from a completely clean slate rather than conforming to the specifications of a large free-electron laser (FEL) user facility, to optimize the entire instrumentation towards fundamental measurements of the mechanism of light absorption and excitation energy transfer. A multidisciplinary team formed by laser

Theory, development, and applications of the scanning positron microbeam and positron reemission microscope

International Nuclear Information System (INIS)

Brandes, G.R.

1990-01-01

The theory, design, development, and applications of two new imaging instruments, the scanning positron microbeam (SPM) and positron reemission microscope (PRM), are discussed. The SPM consists of a sectored lens which focuses and rasters the positrons from the beam across the sample. The results of rastering the 10μm x 50μm beam across a test grid demonstrate the SPM's ability to scan a 500μm diameter region and to resolve features with ∼ 5μm resolution. The SPM was used to examine the location of defects in a Si-on-SiO 2 sample. Possible applications to three dimensional defect spectroscopy and the observation of small samples are considered. In the PRM, the positrons from the brightness-enhanced beam are focused at 5keV to an 8/Am diameter spot (FWHM) onto a thin metal single crystal. An image of the opposing side of the film is formed by accelerating and focusing the reemitted thermalized positrons with a cathode lens objective and a projector lens. The final image (real) is a record of the thermal positron emission intensity versus position. Images of surface and subsurface defect structures, taken at magnifications up to 4400x and with a resolution up to 80nm, are presented and discussed. The ultimate resolution capabilities and possible applications of the PRM are examined. The implantation and diffusion process of positrons was studied with the PRM by examining the positron emission profile of 3-9keV positrons implanted into a 2200 angstrom thick Ni single crystal

Stand-off imaging Raman spectroscopy for forensic analysis of post-blast scenes: trace detection of ammonium nitrate and 2,4,6-trinitrotoluene

Science.gov (United States)

Ceco, Ema; Önnerud, Hans; Menning, Dennis; Gilljam, John L.; Bââth, Petra; Östmark, Henric

2014-05-01

The following paper presents a realistic forensic capability test of an imaging Raman spectroscopy based demonstrator system, developed at FOI, the Swedish Defence Research Agency. The system uses a 532 nm laser to irradiate a surface of 25×25mm. The backscattered radiation from the surface is collected by an 8" telescope with subsequent optical system, and is finally imaged onto an ICCD camera. We present here an explosives trace analysis study of samples collected from a realistic scenario after a detonation. A left-behind 5 kg IED, based on ammonium nitrate with a TNT (2,4,6-trinitrotoluene) booster, was detonated in a plastic garbage bin. Aluminum sample plates were mounted vertically on a holder approximately 6 m from the point of detonation. Minutes after the detonation, the samples were analyzed with stand-off imaging Raman spectroscopy from a distance of 10 m. Trace amounts could be detected from the secondary explosive (ammonium nitrate with an analysis time of 1 min. Measurement results also indicated detection of residues from the booster (TNT). The sample plates were subsequently swabbed and analyzed with HPLC and GC-MS analyses to confirm the results from the stand-off imaging Raman system. The presented findings indicate that it is possible to determine the type of explosive used in an IED from a distance, within minutes after the attack, and without tampering with physical evidence at the crime scene.

Jets from young stars - CCD imaging, long-slit spectroscopy, and interpretation of existing data

International Nuclear Information System (INIS)

Mundt, R.; Brugel, E.W.; Buehrke, T.

1987-01-01

High-velocity jets and collimated outflows are now recognized as phenomena commonly associated with young stars. New CCD imaging of five objects, and in particular spatially resolved spectroscopy of eight highly-collimated flows, are discussed. Through the CCD imaging, three new jets have been discovered. It is shown that several previously known Herbig-Haro objects have extended bow-shock-like structures. In most of the latter cases, a jet is pointing from the star toward the bow-shock apex. The concave side of the bow-shock structure is in all cases oriented toward the outflow source. Using a data base of about 20 known jets, a detailed list of observational criteria describing these phenomena is compiled. A physical description and interpretation is presented which discusses the origin of knots in these jets and other structures, the relationship between jets and Herbig-Haro objects, the dissipation of energy along the jet due to internal shocks, the physical parameters, the relationship of optical jets to molecular outflows, and time scales for outflow activity. A short discussion of the driving sources for these jets is also included. 116 references

Design and implementation of a S-parameter wafer defect scanner

International Nuclear Information System (INIS)

Naik, P.S.; Beling, C.D.; Fung, S.

2004-01-01

We describe the design and implementation of a real-time automated scanning system that gives an S-parameter image of a semiconductor wafer, thus allowing the density of vacancy type defects to be shown as a function of position on the wafer. A conventional 22 Na positron source of 0.5 mm diameter rasters across 5 x 5 cm 2 region of two times per hour in rectilinear motion. Gamma ray energies E γ are processed using a standard HP Ge spectroscopy system and a 14 bit nuclear ADC. Over a period of 1-2 days a high resolution 128 x 128 pixel image with 256 colours (scaled to the S-parameter range) can be formed as a wafer defect map. The system is reliable, interactive and user-friendly (patent pending 2003). (orig.)

Quantum cascade laser infrared spectroscopy of single cancer cells

KAUST Repository

Patel, Imran; Rajamanickam, Vijayakumar Palanisamy; Bertoncini, Andrea; Pagliari, Francesca; Tirinato, Luca; Laptenok, Sergey P.; Liberale, Carlo

2017-01-01

Quantum cascade laser infrared spectroscopy is a next generation novel imaging technique allowing high resolution spectral imaging of cells. We show after spectral pre-processing, identification of different cancer cell populations within minutes.

Quantum cascade laser infrared spectroscopy of single cancer cells

KAUST Repository

Patel, Imran

2017-03-27

Quantum cascade laser infrared spectroscopy is a next generation novel imaging technique allowing high resolution spectral imaging of cells. We show after spectral pre-processing, identification of different cancer cell populations within minutes.

Surface enhanced imaging and IR spectroscopy of the biological cells on the nanostructured gold film

Directory of Open Access Journals (Sweden)

G.I. Dovbeshko

2017-07-01

Full Text Available New approach for optical imaging, structural study and cell cultivation based on the effect of the enhancement of optical signals from biomolecules and biological cells near nanostructured rough gold surface is proposed. The surface enhanced IR absorption (SEIRA spectroscopy and confocal microscopy experiments were made using the culture of SPEV (porcine embryonic kidney epithelium transplantable line and fibroblast cells, cultivated and/or adsorbed on the gold substrate. The SEIRA spectra registered from monolayer of the SPEV cells cultivated on the rough gold showed a low frequency shift of about 2 to 7 cm 1 for the most characteristic IR vibrations, compared with those adsorbed from suspension on the same substrate. An enhancement factor of 15…30 was obtained for different molecular vibrations. The confocal microscopy contrast images of the SPEV cells on rough gold substrate were obtained in laser fluorescence mode. This approach opens new possibilities for visualization of the living cells in vivo without staining. The fluorescence of the rough gold surfaces and effects responsible for our findings have been discussed.

High-frame-rate imaging of biological samples with optoacoustic micro-tomography

Science.gov (United States)

Deán-Ben, X. Luís.; López-Schier, Hernán.; Razansky, Daniel

2018-02-01

Optical microscopy remains a major workhorse in biological discovery despite the fact that light scattering limits its applicability to depths of ˜ 1 mm in scattering tissues. Optoacoustic imaging has been shown to overcome this barrier by resolving optical absorption with microscopic resolution in significantly deeper regions. Yet, the time domain is paramount for the observation of biological dynamics in living systems that exhibit fast motion. Commonly, acquisition of microscopy data involves raster scanning across the imaged volume, which significantly limits temporal resolution in 3D. To overcome these limitations, we have devised a fast optoacoustic micro-tomography (OMT) approach based on simultaneous acquisition of 3D image data with a high-density hemispherical ultrasound array having effective detection bandwidth around 25 MHz. We performed experiments by imaging tissue-mimicking phantoms and zebrafish larvae, demonstrating that OMT can provide nearly cellular resolution and imaging speed of 100 volumetric frames per second. As opposed to other optical microscopy techniques, OMT is a hybrid method that resolves optical absorption contrast acoustically using unfocused light excitation. Thus, no penetration barriers are imposed by light scattering in deep tissues, suggesting it as a powerful approach for multi-scale functional and molecular imaging applications.

Development and Optical Testing of the Camera, Hand Lens, and Microscope Probe with Scannable Laser Spectroscopy (CHAMP-SLS)

Science.gov (United States)

Mungas, Greg S.; Gursel, Yekta; Sepulveda, Cesar A.; Anderson, Mark; La Baw, Clayton; Johnson, Kenneth R.; Deans, Matthew; Beegle, Luther; Boynton, John

2008-01-01

Conducting high resolution field microscopy with coupled laser spectroscopy that can be used to selectively analyze the surface chemistry of individual pixels in a scene is an enabling capability for next generation robotic and manned spaceflight missions, civil, and military applications. In the laboratory, we use a range of imaging and surface preparation tools that provide us with in-focus images, context imaging for identifying features that we want to investigate at high magnification, and surface-optical coupling that allows us to apply optical spectroscopic analysis techniques for analyzing surface chemistry particularly at high magnifications. The camera, hand lens, and microscope probe with scannable laser spectroscopy (CHAMP-SLS) is an imaging/spectroscopy instrument capable of imaging continuously from infinity down to high resolution microscopy (resolution of approx. 1 micron/pixel in a final camera format), the closer CHAMP-SLS is placed to a feature, the higher the resultant magnification. At hand lens to microscopic magnifications, the imaged scene can be selectively interrogated with point spectroscopic techniques such as Raman spectroscopy, microscopic Laser Induced Breakdown Spectroscopy (micro-LIBS), laser ablation mass-spectrometry, Fluorescence spectroscopy, and/or Reflectance spectroscopy. This paper summarizes the optical design, development, and testing of the CHAMP-SLS optics.

THE GRISM LENS-AMPLIFIED SURVEY FROM SPACE (GLASS). IV. MASS RECONSTRUCTION OF THE LENSING CLUSTER ABELL 2744 FROM FRONTIER FIELD IMAGING AND GLASS SPECTROSCOPY

Energy Technology Data Exchange (ETDEWEB)

Wang, X.; Schmidt, K. B.; Jones, T. A. [Department of Physics, University of California, Santa Barbara, CA 93106-9530 (United States); Hoag, A.; Huang, K.-H.; Bradac, M. [Department of Physics, University of California, Davis, CA 95616 (United States); Treu, T. [Department of Physics and Astronomy, UCLA, Los Angeles, CA 90095-1547 (United States); Brammer, G. B.; Ryan, R. E. Jr. [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD, 21218 (United States); Vulcani, B. [Kavli Institute for the Physics and Mathematics of the Universe (WPI), The University of Tokyo Institutes for Advanced Study (UTIAS), the University of Tokyo, Kashiwa, 277-8582 (Japan); Amorín, R.; Castellano, M.; Fontana, A.; Merlin, E. [INAF—Osservatorio Astronomico di Roma Via Frascati 33, I-00040 Monte Porzio Catone (Italy); Trenti, M., E-mail: xinwang@physics.ucsb.edu [School of Physics, The University of Melbourne, VIC 3010 (Australia)

2015-09-20

We present a strong and weak lensing reconstruction of the massive cluster Abell 2744, the first cluster for which deep Hubble Frontier Fields (HFF) images and spectroscopy from the Grism Lens-Amplified Survey from Space (GLASS) are available. By performing a targeted search for emission lines in multiply imaged sources using the GLASS spectra, we obtain five high-confidence spectroscopic redshifts and two tentative ones. We confirm one strongly lensed system by detecting the same emission lines in all three multiple images. We also search for additional line emitters blindly and use the full GLASS spectroscopic catalog to test reliability of photometric redshifts for faint line emitters. We see a reasonable agreement between our photometric and spectroscopic redshift measurements, when including nebular emission in photometric redshift estimations. We introduce a stringent procedure to identify only secure multiple image sets based on colors, morphology, and spectroscopy. By combining 7 multiple image systems with secure spectroscopic redshifts (at 5 distinct redshift planes) with 18 multiple image systems with secure photometric redshifts, we reconstruct the gravitational potential of the cluster pixellated on an adaptive grid, using a total of 72 images. The resulting mass map is compared with a stellar mass map obtained from the deep Spitzer Frontier Fields data to study the relative distribution of stars and dark matter in the cluster. We find that the stellar to total mass ratio varies substantially across the cluster field, suggesting that stars do not trace exactly the total mass in this interacting system. The maps of convergence, shear, and magnification are made available in the standard HFF format.

The Grism Lens-amplified Survey from Space (GLASS). IV. Mass Reconstruction of the Lensing Cluster Abell 2744 from Frontier Field Imaging and GLASS Spectroscopy

Science.gov (United States)

Wang, X.; Hoag, A.; Huang, K.-H.; Treu, T.; Bradač, M.; Schmidt, K. B.; Brammer, G. B.; Vulcani, B.; Jones, T. A.; Ryan, R. E., Jr.; Amorín, R.; Castellano, M.; Fontana, A.; Merlin, E.; Trenti, M.

2015-09-01

We present a strong and weak lensing reconstruction of the massive cluster Abell 2744, the first cluster for which deep Hubble Frontier Fields (HFF) images and spectroscopy from the Grism Lens-Amplified Survey from Space (GLASS) are available. By performing a targeted search for emission lines in multiply imaged sources using the GLASS spectra, we obtain five high-confidence spectroscopic redshifts and two tentative ones. We confirm one strongly lensed system by detecting the same emission lines in all three multiple images. We also search for additional line emitters blindly and use the full GLASS spectroscopic catalog to test reliability of photometric redshifts for faint line emitters. We see a reasonable agreement between our photometric and spectroscopic redshift measurements, when including nebular emission in photometric redshift estimations. We introduce a stringent procedure to identify only secure multiple image sets based on colors, morphology, and spectroscopy. By combining 7 multiple image systems with secure spectroscopic redshifts (at 5 distinct redshift planes) with 18 multiple image systems with secure photometric redshifts, we reconstruct the gravitational potential of the cluster pixellated on an adaptive grid, using a total of 72 images. The resulting mass map is compared with a stellar mass map obtained from the deep Spitzer Frontier Fields data to study the relative distribution of stars and dark matter in the cluster. We find that the stellar to total mass ratio varies substantially across the cluster field, suggesting that stars do not trace exactly the total mass in this interacting system. The maps of convergence, shear, and magnification are made available in the standard HFF format.

Magnetic Resonance Imaging (MRI and Spectroscopy (MRS in Breast Cancer

Directory of Open Access Journals (Sweden)

Uma Sharma

2008-01-01

Full Text Available Breast cancer is a major health problem in women and early detection is of prime importance. Breast magnetic resonance imaging (MRI provides both physical and physiologic tissue features that are useful in discriminating malignant from benign lesions. Contrast enhanced MRI is valuable for diagnosis of small tumors in dense breast and the structural and kinetic parameters improved the specificity of diagnosing benign from malignant lesions. It is a complimentary modality for preoperative staging, to follow response to therapy, to detect recurrences and for screening high risk women. Diffusion, perfusion and MR elastography have been applied to breast lesion characterization and show promise.In-vivo MR spectroscopy (MRS is a valuable method to obtain the biochemical status of normal and diseased tissues. Malignant tissues contain high concentration of choline containing compounds that can be used as a biochemical marker. MRS helps to increase the specificity of MRI in lesions larger than 1cm and to monitor the tumor response. Various MR techniques show promise primarily as adjunct to the existing standard detection techniques, and its acceptability as a screening method will increase if specificity can be improved. This review presents the progress made in different MRI and MRS techniques in breast cancer management.

Magnetic Resonance Imaging (MRI and Spectroscopy (MRS in Breast Cancer

Directory of Open Access Journals (Sweden)

Uma Sharma

2008-01-01

Full Text Available Breast cancer is a major health problem in women and early detection is of prime importance. Breast magnetic resonance imaging (MRI provides both physical and physiologic tissue features that are useful in discriminating malignant from benign lesions. Contrast enhanced MRI is valuable for diagnosis of small tumors in dense breast and the structural and kinetic parameters improved the specificity of diagnosing benign from malignant lesions. It is a complimentary modality for preoperative staging, to follow response to therapy, to detect recurrences and for screening high risk women. Diffusion, perfusion and MR elastography have been applied to breast lesion characterization and show promise. In-vivo MR spectroscopy (MRS is a valuable method to obtain the biochemical status of normal and diseased tissues. Malignant tissues contain high concentration of choline containing compounds that can be used as a biochemical marker. MRS helps to increase the specificity of MRI in lesions larger than 1cm and to monitor the tumor response. Various MR techniques show promise primarily as adjunct to the existing standard detection techniques, and its acceptability as a screening method will increase if specificity can be improved. This review presents the progress made in different MRI and MRS techniques in beast cancer management.

Fabrication of large area plasmonic nanoparticle grating structure on silver halide based transmission electron microscope film and its application as a surface enhanced Raman spectroscopy substrate

International Nuclear Information System (INIS)

Sudheer,; Tiwari, P.; Singh, M. N.; Sinha, A. K.; Rai, V. N.; Srivastava, A. K.; Bhartiya, S.; Mukherjee, C.

2015-01-01

The plasmonic responses of silver nanoparticle grating structures of different periods made on silver halide based electron microscope film are investigated. Raster scan of the conventional scanning electron microscope (SEM) is used to carry out electron beam lithography for fabricating the plasmonic nanoparticle grating (PNG) structures. Morphological characterization of the PNG structures, carried out by the SEM and the atomic force microscope, indicates that the depth of the groove decreases with a decrease in the grating period. Elemental characterization performed by the energy dispersive spectroscopy and the x-ray diffraction shows the presence of nanoparticles of silver in the PNG grating. The optical characterization of the gratings shows that the localized surface plasmon resonance peak shifts from 366 to 378 nm and broadens with a decrease in grating period from 10 to 2.5 μm. The surface enhanced Raman spectroscopy of the Rhodamine-6G dye coated PNG structure shows the maximum enhancement by two orders of magnitude in comparison to the randomly distributed silver nanoparticles having similar size and shape as the PNG structure

Assessment of Early Toxicity and Response in Patients Treated With Proton and Carbon Ion Therapy at the Heidelberg Ion Therapy Center Using the Raster Scanning Technique

Energy Technology Data Exchange (ETDEWEB)

Rieken, Stefan; Habermehl, Daniel; Nikoghosyan, Anna; Jensen, Alexandra [Department of Radiation Oncology, University Hospital of Heidelberg, Heidelberg (Germany); Haberer, Thomas [Heidelberg Ion Therapy Center, Heidelberg (Germany); Jaekel, Oliver [Heidelberg Ion Therapy Center, Heidelberg (Germany); Department of Medical Physics, German Cancer Research Center (DKFZ), Heidelberg (Germany); Muenter, Marc W.; Welzel, Thomas; Debus, Juergen [Department of Radiation Oncology, University Hospital of Heidelberg, Heidelberg (Germany); Combs, Stephanie E., E-mail: Stephanie.Combs@med.uni-hedielberg.de [Department of Radiation Oncology, University Hospital of Heidelberg, Heidelberg (Germany)

2011-12-01

Puropose: To asses early toxicity and response in 118 patients treated with scanned ion beams to validate the safety of intensity-controlled raster scanning at the Heidelberg Ion Therapy Center. Patients and Methods: Between November 2009 and June 2010, we treated 118 patients with proton and carbon ion radiotherapy (RT) using active beam delivery. The main indications included skull base chordomas and chondrosarcomas, salivary gland tumors, and gliomas. We evaluated early toxicity within 6 weeks after RT and the initial clinical and radiologic response for quality assurance in our new facility. Results: In all 118 patients, few side effects were observed, in particular, no high numbers of severe acute toxicity were found. In general, the patients treated with particle therapy alone showed only a few single side effects, mainly Radiation Therapy Oncology Group/Common Terminology Criteria grade 1. The most frequent side effects and cumulative incidence of single side effects were observed in the head-and-neck patients treated with particle therapy as a boost and photon intensity-modulated RT. The toxicities included common radiation-attributed reactions known from photon RT, including mucositis, dysphagia, and skin erythema. The most predominant imaging responses were observed in patients with high-grade gliomas and those with salivary gland tumors. For skull base tumors, imaging showed a stable tumor outline in most patients. Thirteen patients showed improvement of pre-existing clinical symptoms. Conclusions: Side effects related to particle treatment were rare, and the overall tolerability of the treatment was shown. The initial response was promising. The data have confirmed the safe delivery of carbon ions and protons at the newly opened Heidelberg facility.

The use of computer-generated color graphic images for transient thermal analysis. [for hypersonic aircraft

Science.gov (United States)

Edwards, C. L. W.; Meissner, F. T.; Hall, J. B.

1979-01-01

Color computer graphics techniques were investigated as a means of rapidly scanning and interpreting large sets of transient heating data. The data presented were generated to support the conceptual design of a heat-sink thermal protection system (TPS) for a hypersonic research airplane. Color-coded vector and raster displays of the numerical geometry used in the heating calculations were employed to analyze skin thicknesses and surface temperatures of the heat-sink TPS under a variety of trajectory flight profiles. Both vector and raster displays proved to be effective means for rapidly identifying heat-sink mass concentrations, regions of high heating, and potentially adverse thermal gradients. The color-coded (raster) surface displays are a very efficient means for displaying surface-temperature and heating histories, and thereby the more stringent design requirements can quickly be identified. The related hardware and software developments required to implement both the vector and the raster displays for this application are also discussed.

Proton magnetic spectroscopy agreed better with magnetic resonance image to lateralization of epileptogenic zone than with surface electroencephalography

Directory of Open Access Journals (Sweden)

Ricardo Andre Amorim Leite

2013-09-01

Full Text Available Objective To analyze the agreement rate of proton magnetic spectroscopy with magnetic resonance image (MRI and surface electroence-phalography (EEG in extratemporal neocortical epilepsies. Methods A cross-sectional study, type series of cases included 33 patients, age range 13–59 years old, of both gender, presenting structural alteration identified by MRI (75.8% or by neurophysiologic techniques (72.7%. The variables were alterations of N-acetyl-aspartate/choline, N-acetyl-aspartate/creatine, choline/creatine, and N-acetyl-aspartate/cho-line+creatine coefficient of asymmetry. Results Agreement rates of lateralization by coefficient of asymmetry of NAA/Cho, NAA/Cr, Co/Cr, and NAA/Cho+Cr with MRI, independent of alteration of surface EEG, were equal to 93.3, 57.9, 15.4, and 93.3%, respectively, modifying to 100, 33.3, 0, and 100%, in 16 patients, with lateralization agreement of MRI and surface EEG. Conclusion Proton magnetic spectroscopy agreed better with MRI to lateralization of epileptogenic zone than with surface EEG.

Proton MR spectroscopy of hyperplastic hematopoietic marrow in aplastic anemia

Energy Technology Data Exchange (ETDEWEB)

Amano, Yasuo; Kumazaki, Tatsuo [Nippon Medical School, Tokyo (Japan); Arai, Nobuyuki

1997-04-01

The purpose of this study was to compare the findings of magnetic resonance (MR) spectroscopy of hyperplastic hematopoietic marrow with those of normal bone marrow. Twenty-four samples of normal marrow from eight control subjects and 19 samples of hyperplastic marrow in aplastic anemia were examined with a 1.5 T MR unit. The former showed low intensity on opposed-phase T1-weighted images, while the latter showed high intensity on both fast STIR and opposed-phase T1-weighted images. MR spectroscopy quantitatively confirmed that the water; fat ratio was increased and the transverse relaxation time of water was changed in hyperplastic bone marrow, compared with normal bone marrow. In summary, MR imaging is able to detect hematopoietic regions among a wide range of bone marrow of aplastic anemia, while MR spectroscopy allowed us to quantitatively analyze the cell population of hyperplastic hematopoietic marrow in aplastic anemia. (author)

Proton MR spectroscopy of hyperplastic hematopoietic marrow in aplastic anemia

International Nuclear Information System (INIS)

Amano, Yasuo; Kumazaki, Tatsuo; Arai, Nobuyuki.

1997-01-01

The purpose of this study was to compare the findings of magnetic resonance (MR) spectroscopy of hyperplastic hematopoietic marrow with those of normal bone marrow. Twenty-four samples of normal marrow from eight control subjects and 19 samples of hyperplastic marrow in aplastic anemia were examined with a 1.5 T MR unit. The former showed low intensity on opposed-phase T1-weighted images, while the latter showed high intensity on both fast STIR and opposed-phase T1-weighted images. MR spectroscopy quantitatively confirmed that the water; fat ratio was increased and the transverse relaxation time of water was changed in hyperplastic bone marrow, compared with normal bone marrow. In summary, MR imaging is able to detect hematopoietic regions among a wide range of bone marrow of aplastic anemia, while MR spectroscopy allowed us to quantitatively analyze the cell population of hyperplastic hematopoietic marrow in aplastic anemia. (author)

Initial results from the fast imaging solar spectrograph (FISS)

CERN Document Server

2015-01-01

This collection of papers describes the instrument and initial results obtained from the Fast Imaging Solar Spectrograph (FISS),  one of the post-focus instruments of the 1.6 meter New Solar Telescope at the Big Bear Solar Observatory. The FISS primarily aims at investigating structures and dynamics of  chromospheric features. This instrument is a dual-band Echelle spectrograph optimized for the simultaneous recording of the H I 656.3 nm band and the Ca II 854.2 nm band. The imaging is done with the fast raster scan realized by the linear motion of a two-mirror scanner, and its quality is determined by the performance of the adaptive optics of the telescope.    These papers illustrate the capability of the early FISS observations in the study of chromospheric features. Since the imaging quality has been improved a lot with the advance of the adaptive optics, one can obtain much better data with the current FISS observations.        This volume is aimed at graduate students and researchers working in...

Non-invasive diagnosis in cerebral ischemia by means of magnetic resonance imaging and near-infrared spectroscopy

International Nuclear Information System (INIS)

Piepgras, A.; Gueckel, F.; Laemmler, B.; Weigel, R.; Schmiedek, P.

1994-01-01

We describe the non-invasive assessment of cerebrovascular reserve capacity by means of near-infrared spectroscopy (NIRS) and magnetic resonance imaging. Both methods are compared with transcranial Doppler sonography. There is a good correlation of the three methods in the changes in cerebral oxygen saturation and in blood velocity following acetazolamide stimulation of cerebral blood flow, except found in one patient with unilateral carotid artery occlusion. In this patient we found a decreased cerebrovascular reserve capacity, revealed by a magnetic resonance technique designed to quantify CBV and CBF. We postulate a raised oxygen extraction as raised oxygen extraction as the cause of his changes in oxygen saturation. (orig.) [de

Transport and accumulation of PVP-Hypericin in cancer and normal cells characterized by image correlation spectroscopy techniques.

Science.gov (United States)

Penjweini, Rozhin; Smisdom, Nick; Deville, Sarah; Ameloot, Marcel

2014-05-01

PVP-Hypericin (PVP: polyvinylpyrrolidone) is a potent anti-cancer photosensitizer for photodynamic diagnosis (PDD) and therapy (PDT). However, cellular targets and mechanisms involved in the cancer-selectivity of the photosensitizer are not yet fully understood. This paper gives new insights into the differential transport and localization of PVP-Hypericin in cancer and normal cells which are essential to unravel the mechanisms of action and cancer-selectivity. Temporal (TICS) and spatiotemporal (STICS) image correlation spectroscopy are used for the assessment of PVP-Hypericin diffusion and/or velocity in the case of concerted flow in human cervical epithelial HeLa and human lung carcinoma A549 cells, as well as in human primary dendritic cells (DC) and human peripheral blood mononuclear cells (PBMC). Spatiotemporal image cross-correlation spectroscopy (STICCS) based on organelle specific fluorescent labeling is employed to study the accumulation of the photosensitizer in nucleus, mitochondria, early-endosomes and lysosomes of the cells and to assess the dynamics of co-migrating molecules. Whereas STICS and TICS did not show a remarkable difference between the dynamics of PVP-Hypericin in HeLa, A549 and DC cells, a significantly different diffusion rate of the photosensitizer was measured in PBMC. STICCS detected a stationary accumulation of PVP-Hypericin within the nucleus, mitochondria, early endosomes and lysosomes of HeLa and A549 cells. However, significant flow due to the directed motion of the organelles was detected. In contrast, no accumulation in the nucleus and mitochondria of DC and PBMC could be monitored. Copyright © 2014 Elsevier B.V. All rights reserved.

Effective Clipart Image Vectorization through Direct Optimization of Bezigons.

Science.gov (United States)

Yang, Ming; Chao, Hongyang; Zhang, Chi; Guo, Jun; Yuan, Lu; Sun, Jian

2016-02-01

Bezigons, i.e., closed paths composed of Bézier curves, have been widely employed to describe shapes in image vectorization results. However, most existing vectorization techniques infer the bezigons by simply approximating an intermediate vector representation (such as polygons). Consequently, the resultant bezigons are sometimes imperfect due to accumulated errors, fitting ambiguities, and a lack of curve priors, especially for low-resolution images. In this paper, we describe a novel method for vectorizing clipart images. In contrast to previous methods, we directly optimize the bezigons rather than using other intermediate representations; therefore, the resultant bezigons are not only of higher fidelity compared with the original raster image but also more reasonable because they were traced by a proficient expert. To enable such optimization, we have overcome several challenges and have devised a differentiable data energy as well as several curve-based prior terms. To improve the efficiency of the optimization, we also take advantage of the local control property of bezigons and adopt an overlapped piecewise optimization strategy. The experimental results show that our method outperforms both the current state-of-the-art method and commonly used commercial software in terms of bezigon quality.

Validation of a multi-frequency electrical impedance tomography (mfEIT) system KHU Mark1: impedance spectroscopy and time-difference imaging

International Nuclear Information System (INIS)

Oh, Tong In; Koo, Hwan; Lee, Kyung Heon; Kim, Sang Min; Woo, Eung Je; Lee, Jeehyun; Kim, Sung Wan; Seo, Jin Keun

2008-01-01

Validation and interpretation of reconstructed images using a multi-frequency electrical impedance tomography (mfEIT) requires a conductivity phantom including imaging objects with known complex conductivity (σ + iωε) spectra. We describe imaging experiments using the recently developed mfEIT system called the KHU Mark1 with the frequency range of 10 Hz to 500 kHz. Using a bio-impedance spectroscopy (BIS) system, we first measured complex conductivity spectra of different imaging objects including saline, agar, polyacrylamide, TX151, animal hide gelatin, banana and cucumber. Based on an analysis of how conductivity and permittivity affect measured complex boundary voltages, we suggested a new complex version of a multi-frequency time-difference image reconstruction algorithm. Imaging experiments were conducted to produce time-difference images of the objects at multiple frequencies using the proposed algorithm. Images of a conductor (stainless steel) and an insulator (acrylic plastic) were used to set a common scale bar to display all images. Comparing reconstructed time-difference images at multiple frequencies with measured complex conductivity spectra, we found that they showed an overall similarity in terms of changes in complex conductivity values with respect to frequency. However, primarily due to the limitation of the difference imaging algorithm, we suggest that multi-frequency time-difference images must be interpreted in terms of relative contrast changes with respect to frequency. We propose further imaging studies using biological tissues of known complex conductivity spectra and using human subjects to find clinical applications of the mfEIT system

Cartographic Production for the FLaSH Map Study: Generation of Rugosity Grids, 2008

Science.gov (United States)

Robbins, Lisa L.; Knorr, Paul O.; Hansen, Mark

2010-01-01

Project Summary This series of raster data is a U.S. Geological Survey (USGS) Data Series release from the Florida Shelf Habitat Project (FLaSH). This disc contains two raster images in Environmental Systems Research Institute, Inc. (ESRI) raster grid format, jpeg image format, and Geo-referenced Tagged Image File Format (GeoTIFF). Data is also provided in non-image ASCII format. Rugosity grids at two resolutions (250 m and 1000 m) were generated for West Florida shelf waters to 250 m using a custom algorithm that follows the methods of Valentine and others (2004). The Methods portion of this document describes the specific steps used to generate the raster images. Rugosity, also referred to as roughness, ruggedness, or the surface-area ratio (Riley and others, 1999; Wilson and others, 2007), is a visual and quantitative measurement of terrain complexity, a common variable in ecological habitat studies. The rugosity of an area can affect biota by influencing habitat, providing shelter from elements, determining the quantity and type of living space, influencing the type and quantity of flora, affecting predator-prey relationships by providing cover and concealment, and, as an expression of vertical relief, can influence local environmental conditions such as temperature and moisture. In the marine environment rugosity can furthermore influence current flow rate and direction, increase the residence time of water in an area through eddying and current deflection, influence local water conditions such as chemistry, turbidity, and temperature, and influence the rate and nature of sedimentary deposition. State-of-the-art computer-mapping techniques and data-processing tools were used to develop shelf-wide raster and vector data layers. Florida Shelf Habitat (FLaSH) Mapping Project (http://coastal.er.usgs.gov/flash) endeavors to locate available data, identify data gaps, synthesize existing information, and expand our understanding of geologic processes in our dynamic

Fine-Pitch CdTe Detector for Hard X-Ray Imaging and Spectroscopy of the Sun with the FOXSI Rocket Experiment

Science.gov (United States)

Ishikawa, Shin-nosuke; Katsuragawa, Miho; Watanabe, Shin; Uchida, Yuusuke; Takeda, Shin'lchiro; Takahashi, Tadayuki; Saito, Shinya; Glesener, Lindsay; Bultrago-Casas, Juan Camilo; Krucker, Sam;

The relative biological effectiveness for carbon and oxygen ion beams using the raster-scanning technique in hepatocellular carcinoma cell lines.

Directory of Open Access Journals (Sweden)

Daniel Habermehl

Full Text Available BACKGROUND: Aim of this study was to evaluate the relative biological effectiveness (RBE of carbon (12C and oxygen ion (16O-irradiation applied in the raster-scanning technique at the Heidelberg Ion beam Therapy center (HIT based on clonogenic survival in hepatocellular carcinoma cell lines compared to photon irradiation. METHODS: Four human HCC lines Hep3B, PLC, HepG2 and HUH7 were irradiated with photons, 12C and 16O using a customized experimental setting at HIT for in-vitro trials. Cells were irradiated with increasing physical photon single doses of 0, 2, 4 and 6 Gy and heavy ion-single doses of 0, 0.125, 0.5, 1, 2, 3 Gy (12C and 16O. SOBP-penetration depth and extension was 35 mm +/-4 mm and 36 mm +/-5 mm for carbon ions and oxygen ions respectively. Mean energy level and mean linear energy transfer (LET were 130 MeV/u and 112 keV/um for 12C, and 154 MeV/u and 146 keV/um for 16O. Clonogenic survival was computated and relative biological effectiveness (RBE values were defined. RESULTS: For all cell lines and both particle modalities α- and β-values were determined. As expected, α-values were significantly higher for 12C and 16O than for photons, reflecting a steeper decline of the initial slope of the survival curves for high-LET beams. RBE-values were in the range of 2.1-3.3 and 1.9-3.1 for 12C and 16O, respectively. CONCLUSION: Both irradiation with 12C and 16O using the raster-scanning technique leads to an enhanced RBE in HCC cell lines. No relevant differences between achieved RBE-values for 12C and 16O were found. Results of this work will further influence biological-adapted treatment planning for HCC patients that will undergo particle therapy with 12C or 16O.

A VLSI-Based High-Performance Raster Image System.

Science.gov (United States)

1986-05-08

and data in broadcast form to the array of memory -hips in the frame buffer, shown in the bottom block. This is simply a physical structure to hold up...Principal Investigator: John Poulton Collaboration on algorithm development: Prof. Jack Goldfeather (Dept. of Mathematics, Carleton Collge ...1983) Cheng-Hong Hsieh (MS, Computer Science, May, 1985) Jeff P. Hultquist Susan Spach Undergraduate ResearLh Assistant: Sonya Holder (BS, Physics , May

Analyzing rasters, vectors and time series using new Python interfaces in GRASS GIS 7

Science.gov (United States)

Petras, Vaclav; Petrasova, Anna; Chemin, Yann; Zambelli, Pietro; Landa, Martin; Gebbert, Sören; Neteler, Markus; Löwe, Peter

2015-04-01

GRASS GIS 7 is a free and open source GIS software developed and used by many scientists (Neteler et al., 2012). While some users of GRASS GIS prefer its graphical user interface, significant part of the scientific community takes advantage of various scripting and programing interfaces offered by GRASS GIS to develop new models and algorithms. Here we will present different interfaces added to GRASS GIS 7 and available in Python, a popular programming language and environment in geosciences. These Python interfaces are designed to satisfy the needs of scientists and programmers under various circumstances. PyGRASS (Zambelli et al., 2013) is a new object-oriented interface to GRASS GIS modules and libraries. The GRASS GIS libraries are implemented in C to ensure maximum performance and the PyGRASS interface provides an intuitive, pythonic access to their functionality. GRASS GIS Python scripting library is another way of accessing GRASS GIS modules. It combines the simplicity of Bash and the efficiency of the Python syntax. When full access to all low-level and advanced functions and structures from GRASS GIS library is required, Python programmers can use an interface based on the Python ctypes package. Ctypes interface provides complete, direct access to all functionality as it would be available to C programmers. GRASS GIS provides specialized Python library for managing and analyzing spatio-temporal data (Gebbert and Pebesma, 2014). The temporal library introduces space time datasets representing time series of raster, 3D raster or vector maps and allows users to combine various spatio-temporal operations including queries, aggregation, sampling or the analysis of spatio-temporal topology. We will also discuss the advantages of implementing scientific algorithm as a GRASS GIS module and we will show how to write such module in Python. To facilitate the development of the module, GRASS GIS provides a Python library for testing (Petras and Gebbert, 2014) which

A new clustering algorithm for scanning electron microscope images

Science.gov (United States)

Yousef, Amr; Duraisamy, Prakash; Karim, Mohammad

2016-04-01

A scanning electron microscope (SEM) is a type of electron microscope that produces images of a sample by scanning it with a focused beam of electrons. The electrons interact with the sample atoms, producing various signals that are collected by detectors. The gathered signals contain information about the sample's surface topography and composition. The electron beam is generally scanned in a raster scan pattern, and the beam's position is combined with the detected signal to produce an image. The most common configuration for an SEM produces a single value per pixel, with the results usually rendered as grayscale images. The captured images may be produced with insufficient brightness, anomalous contrast, jagged edges, and poor quality due to low signal-to-noise ratio, grained topography and poor surface details. The segmentation of the SEM images is a tackling problems in the presence of the previously mentioned distortions. In this paper, we are stressing on the clustering of these type of images. In that sense, we evaluate the performance of the well-known unsupervised clustering and classification techniques such as connectivity based clustering (hierarchical clustering), centroid-based clustering, distribution-based clustering and density-based clustering. Furthermore, we propose a new spatial fuzzy clustering technique that works efficiently on this type of images and compare its results against these regular techniques in terms of clustering validation metrics.

Scanning, non-contact, hybrid broadband diffuse optical spectroscopy and diffuse correlation spectroscopy system.

Science.gov (United States)

Johansson, Johannes D; Mireles, Miguel; Morales-Dalmau, Jordi; Farzam, Parisa; Martínez-Lozano, Mar; Casanovas, Oriol; Durduran, Turgut

2016-02-01

A scanning system for small animal imaging using non-contact, hybrid broadband diffuse optical spectroscopy (ncDOS) and diffuse correlation spectroscopy (ncDCS) is presented. The ncDOS uses a two-dimensional spectrophotometer retrieving broadband (610-900 nm) spectral information from up to fifty-seven source-detector distances between 2 and 5 mm. The ncDCS data is simultaneously acquired from four source-detector pairs. The sample is scanned in two dimensions while tracking variations in height. The system has been validated with liquid phantoms, demonstrated in vivo on a human fingertip during an arm cuff occlusion and on a group of mice with xenoimplanted renal cell carcinoma.

Serial water changes in human skeletal muscles on exercise studied with proton magnetic resonance spectroscopy and imaging

International Nuclear Information System (INIS)

Ogino, Toru; Ikehira, Hiroo; Arimizu, Noboru

1994-01-01

In vivo 1 H-magnetic resonance imaging (MRI) enabled us to study the distribution of water in living tissues and to document changes in human skeletal muscles during physical exercise. The purpose of the present study was to determine the total muscle water changes after exercise using water in 1 H-MR spectroscopy and to compare these changes to the signal intensity change on T 2 * -weighted images and/or to the T 2 value change. Seven young male volunteers were positioned in a 1.5 T Philips MR imaging system. They were then asked to dorsiflex their ankle joint against a 2 kg weight once every 2 seconds for 2 minutes. The peak height of water declined according to the clearance curve after exercise in all seven cases with the 1 H-MRS similar to the signal intensity. The increasing rate at peak height of total muscle water exceeded both the signal intensity and the T 2 value because the water peak height on the 1 H-MRS included the extracellular water. In addition, we measured the changes in signal intensity in both calf muscles after walking race exercise. The time intensity curves were used to draw a clearance curve for each muscle group after exercise. It was possible to discern which muscle was used most from the T 2 * -weighted image that was obtained once after exercise. (author)

Linear and Nonlinear Molecular Spectroscopy with Laser Frequency Combs

Science.gov (United States)

Picque, Nathalie

2013-06-01

The regular pulse train of a mode-locked femtosecond laser can give rise to a comb spectrum of millions of laser modes with a spacing precisely equal to the pulse repetition frequency. Laser frequency combs were conceived a decade ago as tools for the precision spectroscopy of atomic hydrogen. They are now becoming enabling tools for an increasing number of applications, including molecular spectroscopy. Recent experiments of multi-heterodyne frequency comb Fourier transform spectroscopy (also called dual-comb spectroscopy) have demonstrated that the precisely spaced spectral lines of a laser frequency comb can be harnessed for new techniques of linear absorption spectroscopy. The first proof-of-principle experiments have demonstrated a very exciting potential of dual-comb spectroscopy without moving parts for ultra-rapid and ultra-sensitive recording of complex broad spectral bandwidth molecular spectra. Compared to conventional Michelson-based Fourier transform spectroscopy, recording times could be shortened from seconds to microseconds, with intriguing prospects for spectroscopy of short lived transient species. The resolution improves proportionally to the measurement time. Therefore longer recordings allow high resolution spectroscopy of molecules with extreme precision, since the absolute frequency of each laser comb line can be known with the accuracy of an atomic clock. Moreover, since laser frequency combs involve intense ultrashort laser pulses, nonlinear interactions can be harnessed. Broad spectral bandwidth ultra-rapid nonlinear molecular spectroscopy and imaging with two laser frequency combs is demonstrated with coherent Raman effects and two-photon excitation. Real-time multiplex accessing of hyperspectral images may dramatically expand the range of applications of nonlinear microscopy. B. Bernhardt et al., Nature Photonics 4, 55-57 (2010); A. Schliesser et al. Nature Photonics 6, 440-449 (2012); T. Ideguchi et al. arXiv:1201.4177 (2012) T

Biological effects and physical safety aspects of NMR imaging and in vivo spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Tenforde, T.S.; Budinger, T.F.

1985-08-01

An assessment is made of the biological effects and physical hazards of static and time-varying fields associated with the NMR devices that are being used for clinical imaging and in vivo spectroscopy. A summary is given of the current state of knowledge concerning the mechanisms of interaction and the bioeffects of these fields. Additional topics that are discussed include: (1) physical effects on pacemakers and metallic implants such as aneurysm clips, (2) human health studies related to the effects of exposure to nonionizing electromagnetic radiation, and (3) extant guidelines for limiting exposure of patients and medical personnel to the fields produced by NMR devices. On the basis of information available at the present time, it is concluded that the fields associated with the current generation of NMR devices do not pose a significant health risk in themselves. However, rigorous guidelines must be followed to avoid the physical interaction of these fields with metallic implants and medical electronic devices. 476 refs., 5 figs., 2 tabs.

Biological effects and physical safety aspects of NMR imaging and in vivo spectroscopy

International Nuclear Information System (INIS)

Tenforde, T.S.; Budinger, T.F.

1985-08-01

An assessment is made of the biological effects and physical hazards of static and time-varying fields associated with the NMR devices that are being used for clinical imaging and in vivo spectroscopy. A summary is given of the current state of knowledge concerning the mechanisms of interaction and the bioeffects of these fields. Additional topics that are discussed include: (1) physical effects on pacemakers and metallic implants such as aneurysm clips, (2) human health studies related to the effects of exposure to nonionizing electromagnetic radiation, and (3) extant guidelines for limiting exposure of patients and medical personnel to the fields produced by NMR devices. On the basis of information available at the present time, it is concluded that the fields associated with the current generation of NMR devices do not pose a significant health risk in themselves. However, rigorous guidelines must be followed to avoid the physical interaction of these fields with metallic implants and medical electronic devices. 476 refs., 5 figs., 2 tabs

First Simultaneous Visualization of SO{sub 2} and NO{sub 2} Plume Dispersions using Imaging Differential Optical Absorption Spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Lee, Hanlim; Hong, Hyunkee; Han, Kyungsoo [Pukyong National Univ., Busan (Korea, Republic of); Noh, Youngmin [Gwangju Institute of Science and Technology, Gwangju (Korea, Republic of); Kwon, Soonchul [Georgia Institute of Technology, Atlanta (United States)

2014-04-15

Imaging Differential Optical Absorption Spectroscopy (Imaging-DOAS) has been utilized in recent years to provide slant column density (SCD) distributions of several trace gas species in the plume. The present study introduces a new method using Imaging-DOAS data to determine two-dimensional plume structure from the plume emissions of power plant in conditions of negligible aerosol effects on radiative transfer within the plume. We demonstrates for the first time that two-dimensional distributions of sulfur dioxide (SO{sub 2}) and nitrogen dioxide (NO{sub 2}) in power plant emissions can be determined simultaneously in terms of SCD distribution. The SO{sub 2} SCD values generally decreased with increasing distance from the stack and with distance from the center of the plume. Meanwhile, high NO{sub 2} SCD was observed at locations several hundred meters away from the first stack due to the ratio change of NO to NO{sub 2} in NOx concentration, attributed to the NO oxidation by O{sub 3}. The results of this study show the capability of the Imaging-DOAS technique as a tool to estimate plume dimensions in power plant emissions.

Unsupervised image segmentation for passive THz broadband images for concealed weapon detection

Science.gov (United States)

Ramírez, Mabel D.; Dietlein, Charles R.; Grossman, Erich; Popović, Zoya

2007-04-01

This work presents the application of a basic unsupervised classification algorithm for the segmentation of indoor passive Terahertz images. The 30,000 pixel broadband images of a person with concealed weapons under clothing are taken at a range of 0.8-2m over a frequency range of 0.1-1.2THz using single-pixel row-based raster scanning. The spiral-antenna coupled 36x1x0.02μm Nb bridge cryogenic micro-bolometers are developed at NIST-Optoelectronics Division. The antenna is evaporated on a 250μm thick Si substrate with a 4mm diameter hyper-hemispherical Si lens. The NETD of the microbolometer is 125mK at an integration time of 30 ms. The background temperature calibration is performed with a known 25 pixel source above 330 K, and a measured background fluctuation of 200-500mK. Several weapons were concealed under different fabrics: cotton, polyester, windblocker jacket and thermal sweater. Measured temperature contrasts ranged from 0.5-1K for wrinkles in clothing to 5K for a zipper and 8K for the concealed weapon. In order to automate feature detection in the images, some image processing and pattern recognition techniques have been applied and the results are presented here. We show that even simple algorithms, that can potentially be performed in real time, are capable of differentiating between a metal and a dielectric object concealed under clothing. Additionally, we show that pre-processing can reveal low temperature contrast features, such as folds in clothing.

Emission Line Imaging and Spectroscopy of Distant Galaxies

DEFF Research Database (Denmark)

Zabl, Johannes Florian

for the gas surrounding a galaxy. Around some objects the extended Ly αemission is so strong that it can be detected for individual objects. In this thesis extremely deep VLT/XSHOOTER rest-frame far-UV spectroscopy is presented for Himiko, a gigantic Ly α emitter at redshift z = 6.6 or a time when...

Real-time molecular imaging throughout the entire cell cycle by targeted plasmonic-enhanced Rayleigh/Raman spectroscopy.

Science.gov (United States)

Kang, Bin; Austin, Lauren A; El-Sayed, Mostafa A

2012-10-10

Due to their strong enhancement of scattered light, plasmonic nanoparticles have been utilized for various biological and medical applications. Here, we describe a new technique, Targeted Plasmonic-Enhanced Single-Cell Rayleigh/Raman Spectroscopy, to monitor the molecular changes of any cell-component, such as the nucleus, during the different phases of its full cell cycle by simultaneously recording its Rayleigh images and Raman vibration spectra in real-time. The analysis of the observed Raman DNA and protein peaks allowed the different phases of the cell cycle to be identified. This technique could be used for disease diagnostics and potentially improve our understanding of the molecular mechanisms of cellular functions such as division, death, signaling, and drug action.

Primary granulomatous angiitis of the central nervous system: findings of magnetic resonance spectroscopy and fractional anisotropy in diffusion tensor imaging prior to surgery. Case report.

Science.gov (United States)

Beppu, Takaaki; Inoue, Takashi; Nishimoto, Hideaki; Nakamura, Shinichi; Nakazato, Yoichi; Ogasawara, Kuniaki; Ogawa, Akira

2007-10-01

Primary granulomatous angiitis of the central nervous system (CNS) is extremely rare. Its preoperative diagnosis is difficult as the condition displays nonspecific features on routine neuroimaging investigations. In this paper, the authors report findings of magnetic resonance (MR) spectroscopy and fractional anisotropy (FA) with diffusion tensor MR imaging in a case of granulomatous angiitis of the CNS. A 30-year-old man presented with morning headaches and grand mal seizures. An MR image revealed a mass resembling glioblastoma in the right temporal lobe. Magnetic resonance spectroscopy showed a high choline/creatine (Cho/Cr) ratio indicative of a malignant neoplasm, accompanied by a slight elevation of glutamate and glutamine. The FA value was very low, which is inconsistent with malignant glioma. The mass was totally removed surgically. Histologically, the peripheral lesion of the mass consisted of a rough accumulation of fat granule cells, infiltration of inflammatory cells, and distribution of capillary vessels. Some vessels within the lesion were replaced by granulomas. The histological diagnosis was granulomatous angiitis of the CNS. The MIB-1-positive rate of the granuloma was approximately 5%. Both MR spectroscopy and FA were unable to accurately diagnose granulomatous angiitis of the CNS prior to surgery; however, elevated Cho/Cr and glutamate and glutamine shown by MR spectroscopy may indicate the moderate proliferation potential of the granuloma and the inflammatory process, respectively, in this condition. Although the low FA value in the present case enabled the authors to rule out a diagnosis of glioblastoma, FA values in inflammatory lesions require careful interpretation.

BROADBAND X-RAY IMAGING AND SPECTROSCOPY OF THE CRAB NEBULA AND PULSAR WITH NuSTAR

International Nuclear Information System (INIS)

Madsen, Kristin K.; Harrison, Fiona; Grefenstette, Brian W.; Reynolds, Stephen; An, Hongjun; Boggs, Steven; Craig, William W.; Zoglauer, Andreas; Christensen, Finn E.; Fryer, Chris L.; Hailey, Charles J.; Nynka, Melania; Markwardt, Craig; Zhang, William; Stern, Daniel

2015-01-01

We present broadband (3-78 keV) NuSTAR X-ray imaging and spectroscopy of the Crab nebula and pulsar. We show that while the phase-averaged and spatially integrated nebula + pulsar spectrum is a power law in this energy band, spatially resolved spectroscopy of the nebula finds a break at ∼9 keV in the spectral photon index of the torus structure with a steepening characterized by ΔΓ ∼ 0.25. We also confirm a previously reported steepening in the pulsed spectrum, and quantify it with a broken power law with break energy at ∼12 keV and ΔΓ ∼ 0.27. We present spectral maps of the inner 100'' of the remnant and measure the size of the nebula as a function of energy in seven bands. These results find that the rate of shrinkage with energy of the torus size can be fitted by a power law with an index of γ = 0.094 ± 0.018, consistent with the predictions of Kennel and Coroniti. The change in size is more rapid in the NW direction, coinciding with the counter-jet where we find the index to be a factor of two larger. NuSTAR observed the Crab during the latter part of a γ-ray flare, but found no increase in flux in the 3-78 keV energy band

Analysis of the human brain in primary progressive multiple sclerosis with mapping of the spatial distributions using H-1 MR spectroscopy and diffusion tensor imaging

NARCIS (Netherlands)

Sijens, PE; Irwan, R; Potze, JH; Mostert, JP; De Keyser, J; Oudkerk, M

Primary progressive multiple sclerosis (ppMS; n=4) patients and controls (n=4) were examined by 1H magnetic resonance spectroscopy (MRS) and diffusion tensor imaging (DTI) in order to map choline (Cho), creatine and N-acetylaspartate (NAA), the fractional anisotropy (FA) and the apparent diffusion

ROLE OF MAGNETIC RESONANCE SPECTROSCOPY IN INTRACRANIAL LESIONS- A STUDY OF 75 CASES

Directory of Open Access Journals (Sweden)

Rajendra N. Solank

2017-10-01

Full Text Available BACKGROUND Our study have shown the role of MR spectroscopy in lesions whenever results are equivocal or non-conclusive even on MRI. MR spectroscopy can differentiate the lesions, particularly intracranial lesions on the basis of various metabolites. The aims of this study is to diagnose the intracranial lesions and to show the advantage of MR spectroscopy over the conventional MRI, to differentiate the neoplastic from non-neoplastic lesion, to prove the reliability of MR spectroscopy in identifying the different grades of glioma with histopathological correlation as well as to differentiate recurrent tumour from post-operative changes or radiation necrosis. MATERIALS AND METHODS During the period of August 2009 to July 2011, a prospective study of 75 patients was carried out at Department of Radiodiagnosis, Civil Hospital and BJ Medical College, Ahmedabad, Gujarat. MRI was performed on 1.5 Tesla MR scanner (GE HDXT using dedicated head coil. Conventional MR imaging was performed followed by MR spectroscopy using point resolved spectroscopy. After deciding the region of interest voxel was kept and 2D multivoxel proton spectroscopy (TR- 1000 msec, TE- 144 msec, voxel size 20 x 20 mm or single voxel proton spectroscopy (TR- 1500 msec, TE- 35 msec, voxel size 20 x 20 mm was performed and spectra obtained. RESULTS In the present study of 75 patients, the maximum number of patients were between 31 to 50 years of age. The approximate ratio of male: female was 2: 1. In our study sensitivity, specificity, positive predictive value, negative predictive value of MRI are 89%, 87%, 87% and 89% respectively and of MRI + MRS are 100%, 97%, 97% and 100% respectively in tumours. CONCLUSION MRS (Magnetic Resonance Spectroscopy is a non-invasive imaging technique that studies the chemical activity in the brain and detects the presence of certain chemical substances. Through this imaging technique, images and graphs of the brain can be obtained.

Scanning tunneling spectroscopy under large current flow through the sample.

Science.gov (United States)

Maldonado, A; Guillamón, I; Suderow, H; Vieira, S

2011-07-01

We describe a method to make scanning tunneling microscopy/spectroscopy imaging at very low temperatures while driving a constant electric current up to some tens of mA through the sample. It gives a new local probe, which we term current driven scanning tunneling microscopy/spectroscopy. We show spectroscopic and topographic measurements under the application of a current in superconducting Al and NbSe(2) at 100 mK. Perspective of applications of this local imaging method includes local vortex motion experiments, and Doppler shift local density of states studies.

Principles of electron tunneling spectroscopy

CERN Document Server

Wolf, E L

2012-01-01

Electron tunnelling spectroscopy as a research tool has strongly advanced understanding of superconductivity. This book explains the physics and instrumentation behind the advances illustrated in beautiful images of atoms, rings of atoms and exotic states in high temperature superconductors, and summarizes the state of knowledge that has resulted.

Application of second derivative spectroscopy for increasing molecular specificity of Fourier transform infrared spectroscopic imaging of articular cartilage.

Science.gov (United States)

Rieppo, L; Saarakkala, S; Närhi, T; Helminen, H J; Jurvelin, J S; Rieppo, J

2012-05-01

Fourier transform infrared (FT-IR) spectroscopic imaging is a promising method that enables the analysis of spatial distribution of biochemical components within histological sections. However, analysis of FT-IR spectroscopic data is complicated since absorption peaks often overlap with each other. Second derivative spectroscopy is a technique which enhances the separation of overlapping peaks. The objective of this study was to evaluate the specificity of the second derivative peaks for the main tissue components of articular cartilage (AC), i.e., collagen and proteoglycans (PGs). Histological bovine AC sections were measured before and after enzymatic removal of PGs. Both formalin-fixed sections (n = 10) and cryosections (n = 6) were investigated. Relative changes in the second derivative peak heights caused by the removal of PGs were calculated for both sample groups. The results showed that numerous peaks, e.g., peaks located at 1202 cm(-1) and 1336 cm(-1), altered less than 5% in the experiment. These peaks were assumed to be specific for collagen. In contrast, two peaks located at 1064 cm(-1) and 1376 cm(-1) were seen to alter notably, approximately 50% or more. These peaks were regarded to be specific for PGs. The changes were greater in cryosections than formalin-fixed sections. The results of this study suggest that the second derivative spectroscopy offers a practical and more specific method than routinely used absorption spectrum analysis methods to obtain compositional information on AC with FT-IR spectroscopic imaging. Copyright © 2012 Osteoarthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Brain Magnetic Resonance Imaging and Magnetic Resonance Spectroscopy Findings of Children with Kernicterus

International Nuclear Information System (INIS)

Sarı, Sahabettin; Yavuz, Alpaslan; Batur, Aabdussamet; Bora, Aydın; Caksen, Huseyin

2015-01-01

The term kernicterus, or bilirubin encephalopathy, is used to describe pathological bilirubin staining of the basal ganglia, brain stem, and cerebellum, and is associated with hyperbilirubinemia. Kernicterus generally occurs in untreated hyperbilirubinemia or cases where treatment is delayed. Magnetic resonance imaging (MRI)-based studies have shown characteristic findings in kernicterus. The objective of our study was to describe the role of 1 H magnetic resonance spectroscopy (MRS) in demonstrating these metabolic changes and to review conventional MRI findings of kernicterus. Forty-eight pediatric cases with kernicterus were included in this study. MRI and MRS examinations were performed on variable dates (10–29 days after birth). NAA, Cr, Cho, NAA/Cr, NAA/Cho, and Cho/Cr values were evaluated visually and by computer analysis. There was no statistically significant difference between the NAA and Cho levels in the acute kernicterus patients and the control group (healthy patients), whereas both were significantly elevated in the chronic kernicterus patients. Both the mean NAA/Cr and Cho/Cr ratio values were significantly higher in the acute and chronic cases compared to the control group. The NAA/Cho ratio value was statistically lower in the acute cases than in the control group while it was similar in the chronic cases. Conventional MR imaging and 1 H-MRS are important complementary tools in the diagnostics of neonatal bilirubin encephalopathy. This study provided important information for applying these MR modalities in the evaluation of neonates with bilirubin encephalopathy

Adaptive removal of background and white space from document images using seam categorization

Science.gov (United States)

Fillion, Claude; Fan, Zhigang; Monga, Vishal

2011-03-01

Document images are obtained regularly by rasterization of document content and as scans of printed documents. Resizing via background and white space removal is often desired for better consumption of these images, whether on displays or in print. While white space and background are easy to identify in images, existing methods such as naïve removal and content aware resizing (seam carving) each have limitations that can lead to undesirable artifacts, such as uneven spacing between lines of text or poor arrangement of content. An adaptive method based on image content is hence needed. In this paper we propose an adaptive method to intelligently remove white space and background content from document images. Document images are different from pictorial images in structure. They typically contain objects (text letters, pictures and graphics) separated by uniform background, which include both white paper space and other uniform color background. Pixels in uniform background regions are excellent candidates for deletion if resizing is required, as they introduce less change in document content and style, compared with deletion of object pixels. We propose a background deletion method that exploits both local and global context. The method aims to retain the document structural information and image quality.

Sydenham's chorea: MRI and proton spectroscopy

International Nuclear Information System (INIS)

Castillo, M.; Kwock, L.; Arbelaez, A.

1999-01-01

We present the MRI and proton spectroscopy findings in a child with clinical diagnosis of Sydenham's chorea. MRI showed high signal in the caudate nuclei and putamina on T2-weighted images. We believe that the spectra showed an abnormality in the number and/or function of neurons, lipids from cellular breakdown (cytolytic effect of antibodies), aminoacids (related to the presence of antibodies in the neostriatum), and sugars (also related to the presence of antibodies). The spectroscopy features correlate well with the histopathology and biochemistry of this rare disorder. (orig.)

Computer Assisted Instruction (Cain) For Nuclear Magnetic Resonance Spectroscopy

International Nuclear Information System (INIS)

Jaturonrusmee, Wasna; Arthonvorakul, Areerat; Assateranuwat, Adisorn

2005-10-01

A computer assisted instruction program for nuclear magnetic resonance spectroscopy was developed by using Author ware 5.0, Adobe Image Styler 1.0, Adobe Photo shop 7.0 and Flash MX. The contents included the basic theory of 1H and 13C nuclear magnetic resonance (NMR) spectroscopy, the instrumentation of NMR spectroscopy, the two dimensional (2D) NMR spectroscopy and the interpretation of NMR spectra. The program was also provided examples, and exercises, with emphasis on NMR spectra interpretation to determine the structure of unknown compounds and solutions for self study. The questionnaire from students showed that they were very satisfied with the software

Sodium Chloride Diffusion during Muscle Salting Evidenced by Energy-Dispersive X-ray Spectroscopy Imaging.

Science.gov (United States)

Filgueras, Rénata; Peyrin, Frédéric; Vénien, Annie; Hénot, Jean Marc; Astruc, Thierry

2016-01-27

To better understand the relationship between the muscle structure and NaCl transfers in meat, we used energy-dispersive X-ray spectroscopy (EDS) coupled with scanning electron microscopy (SEM) to analyze brined and dry-salted rat muscles. The muscles were freeze-dried to avoid the delocalization of soluble ions that happens in regular dehydration through a graded series of ethanol. Na and Cl maps were superimposed on SEM images to combine the muscle structure and NaCl diffusion. Brining causes rapid diffusion of NaCl through the tissue. Most brine diffuses in a linear front from the muscle surface, but a small proportion enters through the perimysium network. The muscle area penetrated by brine shows heterogeneous patterns of NaCl retention, with some connective tissue islets containing more NaCl than other parts of perimysium. NaCl penetration is considerably slower after dry salting than after brining.

CdZnTe detectors for gamma-ray Burst ArcSecond Imaging and Spectroscopy (BASIS)

International Nuclear Information System (INIS)

Stahle, C.M.; Palmer, D.; Bartlett, L.M.; Parsons, A.; Shi Zhiqing; Lisse, C.M.; Sappington, C.; Cao, N.; Shu, P.; Gehrels, N.; Teegarden, B.; Birsa, F.; Singh, S.; Odom, J.; Hanchak, C.; Tueller, J.; Barthelmy, S.; Krizmanic, J.; Barbier, L.

1996-01-01

A CdZnTe detector array is being developed for the proposed gamma-ray Burst ArcSecond Imaging and Spectroscopy (BASIS) spaceflight mission to accurately locate gamma-ray bursts, determine their distance scale, and measure the physical characteristics of the emission region. Two-dimensional strip detectors with 100 μm pitch have been fabricated and wire bonded to readout electronics to demonstrate the ability to localize 60 and 122 keV gamma-rays to less than 100 μm. Radiation damage studies on a CdZnTe detector exposed to MeV neutrons showed a small amount of activation but no detector performance degradation for fluences up to 10 10 neutrons/cm 2 . A 1 x 1 in. CdZnTe detector has also been flown on a balloon payload at 115 000 ft in order to measure the CdZnTe background rates. (orig.)

Nuclear magnetic resonance spectroscopy

International Nuclear Information System (INIS)

Rueterjans, H.

1987-01-01

Contributions by various authors who are working in the field of NMR imaging present the current status and the perspectives of in-vivo nuclear magnetic resonance spectroscopy, explaining not only the scientific and medical aspects, but also technical and physical principles as well as questions concerning practical organisation and training, and points of main interest for further research activities. (orig./TRV) [de

Prion structure investigated in situ, ex vivo, and in vitro by FTIR spectroscopy

Science.gov (United States)

Kneipp, Janina; Miller, Lisa M.; Spassov, Sashko; Sokolowski, Fabian; Lasch, Peter; Beekes, Michael; Naumann, Dieter

2004-07-01

Syrian hamster nervous tissue was investigated by FTIR microspectroscopy with conventional and synchrotron infrared light sources. Various tissue structures from the cerebellum and medulla oblongata of scrapie-infected and control hamsters were investigated at a spatial resolution of 50 μm. Single neurons in dorsal root ganglia of scrapie-infected hamsters were analyzed by raster scan mapping at 6 μm spatial resolution. These measurements enabled us to (i) scrutinize structural differences between infected and non-infected tissue and (ii) analyze for the first time the distribution of different protein structures in situ within single nerve cells. Single nerve cells exhibited areas of increased β-sheet content, which co-localized consistently with accumulations of the pathological prion protein (PrPSc). Spectral data were also obtained from purified, partly proteinase K digested PrPSc isolated from scrapie-infected nervous tissue of hamsters to elucidate similarities/dissimilarities between prion structure in situ and ex vivo. A further comparison is drawn to the recombinant Syrian hamster prion protein SHaPrP90-232, whose in vitro transition from the predominantly a-helical isoform to β-sheet rich oligomeric structures was also investigated by FTIR spectroscopy.

Vibrational Micro-Spectroscopy of Human Tissues Analysis: Review.

Science.gov (United States)

Bunaciu, Andrei A; Hoang, Vu Dang; Aboul-Enein, Hassan Y

2017-05-04

Vibrational spectroscopy (Infrared (IR) and Raman) and, in particular, micro-spectroscopy and micro-spectroscopic imaging have been used to characterize developmental changes in tissues, to monitor these changes in cell cultures and to detect disease and drug-induced modifications. The conventional methods for biochemical and histophatological tissue characterization necessitate complex and "time-consuming" sample manipulations and the results are rarely quantifiable. The spectroscopy of molecular vibrations using mid-IR or Raman techniques has been applied to samples of human tissue. This article reviews the application of these vibrational spectroscopic techniques for analysis of biological tissue published between 2005 and 2015.

Proton MR spectroscopy in patients with pyogenic brain abscess: MR spectroscopic imaging versus single-voxel spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Hsu, Shuo-Hsiu, E-mail: gerwuver@gmail.com [Department of Radiology, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); Chou, Ming-Chung, E-mail: mcchou@kmu.edu.tw [Department of Medical Imaging and Radiological Sciences, Kaohsiung Medical University, Kaohsiung, Taiwan, ROC (China); Ko, Cheng-Wen, E-mail: chengwen.ko@gmail.com [Department of Computer Science and Engineering, National Sun Yat-sen University, Kaohsiung, Taiwan, ROC (China); Hsu, Shu-Shong, E-mail: sshsu59@yahoo.com [Department of Neurosurgery, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); Lin, Huey-Shyan, E-mail: sc035@fy.edu.tw [Program of Health-Business Administration, School of Nursing, Fooyin University, Kaohsiung, Taiwan, ROC (China); Fu, Jui-Hsun, E-mail: fujuihsun@gmail.com [Department of Radiology, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); Wang, Po-Chin, E-mail: hiscore6@gmail.com [Department of Radiology, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); School of Medicine, National Yang-Ming University, Taipei, Taiwan, ROC (China); Pan, Huay-Ben, E-mail: panhb@vghks.gov.tw [Department of Radiology, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); School of Medicine, National Yang-Ming University, Taipei, Taiwan, ROC (China); Lai, Ping-Hong, E-mail: pinghonglai@gmail.com [Department of Radiology, Kaohsiung Veterans General Hospital, Kaohsiung, Taiwan, ROC (China); School of Medicine, National Yang-Ming University, Taipei, Taiwan, ROC (China)

2013-08-15

Purpose: Single-voxel spectroscopy (SVS) has been the gold standard technique to diagnose the pyogenic abssess. Two-dimensional magnetic resonance spectroscopic imaging (MRSI) is able to provide spatial distribution of metabolic concentration, and is potentially more suitable for differential diagnosis between abscess and necrotic tumors. Therefore, the purpose of this study was to evaluate the equivalence of MRSI and SVS in the detection of the metabolites in pyogenic brain abscesses. Materials and methods: Forty-two patients with pyogenic abscesses were studied by using both SVS and MRSI methods. Two neuroradiologists reviewed the MRS data independently. A κ value was calculated to express inter-reader agreement of the abscesses metabolites, and a correlation coefficient was calculated to show the similarity of two spectra. After consensus judgment of two readers, the binary value of metabolites of pyogenic abscesses (presence or absence) was compared between SVS and MRSI. Results: The consistency of spectral interpretation of the two readers was very good (κ ranged from 0.95 to 1), and the similarity of two spectra was also very high (cc = 0.9 ± 0.05). After consensus judgment of two readers, the sensitivities of MRSI ranged from 91% (acetate) to 100% (amino acids, succinate, lactate, lipid), and the specificities of MRSI were 100% for detecting all metabolites with SVS as reference. Conclusion: SVS and MRSI provide similar metabolites in the cavity of pyogenic brain abscess. With additional metabolic information of cavity wall and contralateral normal-appearing brain tissue, MRSI would be a more suitable technique to differentiate abscesses from necrotic tumors.

Color image lossy compression based on blind evaluation and prediction of noise characteristics

Science.gov (United States)

Ponomarenko, Nikolay N.; Lukin, Vladimir V.; Egiazarian, Karen O.; Lepisto, Leena

2011-03-01

The paper deals with JPEG adaptive lossy compression of color images formed by digital cameras. Adaptation to noise characteristics and blur estimated for each given image is carried out. The dominant factor degrading image quality is determined in a blind manner. Characteristics of this dominant factor are then estimated. Finally, a scaling factor that determines quantization steps for default JPEG table is adaptively set (selected). Within this general framework, two possible strategies are considered. A first one presumes blind estimation for an image after all operations in digital image processing chain just before compressing a given raster image. A second strategy is based on prediction of noise and blur parameters from analysis of RAW image under quite general assumptions concerning characteristics parameters of transformations an image will be subject to at further processing stages. The advantages of both strategies are discussed. The first strategy provides more accurate estimation and larger benefit in image compression ratio (CR) compared to super-high quality (SHQ) mode. However, it is more complicated and requires more resources. The second strategy is simpler but less beneficial. The proposed approaches are tested for quite many real life color images acquired by digital cameras and shown to provide more than two time increase of average CR compared to SHQ mode without introducing visible distortions with respect to SHQ compressed images.

Cerenkov ring imaging and spectroscopy of charged KSTAR interactions at 11 GeV/c

International Nuclear Information System (INIS)

Bird, P.F.

1988-11-01

The physics and technology of this new Cerenkov detector are discussed, including materials studies, construction techniques, and resolution measurements. Sources of resolution error are individually identified and measured where possible. The results of all studied indicate that the measurement resolution is understood. This work has led to the adoption of a large scale ring imaging detector as part of a new high energy physics spectrometer, the SLD, at the Stanford Linear Accelerator Center. Results from an amplitude analysis of strange meson final states in K/sup /minus//p → /ovr K/sub 0//π/sup /minus//p interactions are presented. The data derive from a 4 event/nb exposure of the LASS (large Aperture Superconducting Solenoid) spectrometer to an 11 GeV/c K/sup /minus// beam. The data sample consists of /approximately/100,000 vents distributed over the Dalitz plot of the channel. The process is observed to be dominated by the production and decay of natural spin-parity (J/sup P/ = 1/sup /minus//,2 + ,3/sup /minus//,/hor ellipsis/) strange meson states. The data can be understood in terms of a simple model in which the resonant /ovr K*/sup -// are produced predominantly via natural parity exchange in the t channel. The leading K*(890), K 2 *(1430), and K*(1780) resonances are clearly observed and measured, and the underlying spectroscopy is also extracted. Indications of higher mass resonance production are also shown. The observed properties of these states are used to confront current models of quark spectroscopy in strange meson systems. 94 refs., 96 figs., 23 tabs

Volumetric fluorescence retinal imaging in vivo over a 30-degree field of view by oblique scanning laser ophthalmoscopy (oSLO).

Science.gov (United States)

Zhang, Lei; Song, Weiye; Shao, Di; Zhang, Sui; Desai, Manishi; Ness, Steven; Roy, Sayon; Yi, Ji

2018-01-01

While fluorescent contrast is widely used in ophthalmology, three-dimensional (3D) fluorescence retinal imaging over a large field of view (FOV) has been challenging. In this paper, we describe a novel oblique scanning laser ophthalmoscopy (oSLO) technique that provides 3D volumetric fluorescence retinal imaging with only one raster scan. The technique utilizes scanned oblique illumination and angled detection to obtain fluorescent cross-sectional images, analogous to optical coherence tomography (OCT) line scans (or B-scans). By breaking the coaxial optical alignment used in conventional retinal imaging modalities, depth resolution is drastically improved. To demonstrate the capability of oSLO, we have performed in vivo volumetric fluorescein angiography (FA) of the rat retina with ~25μm depth resolution and over a 30° FOV. Using depth segmentation, oSLO can obtain high contrast images of the microvasculature down to single capillaries in 3D. The multi-modal nature of oSLO also allows for seamless combination with simultaneous OCT angiography.

Methods of filtering the graph images of the functions

Directory of Open Access Journals (Sweden)

Олександр Григорович Бурса

2017-06-01

Full Text Available The theoretical aspects of cleaning raster images of scanned graphs of functions from digital, chromatic and luminance distortions by using computer graphics techniques have been considered. The basic types of distortions characteristic of graph images of functions have been stated. To suppress the distortion several methods, providing for high-quality of the resulting images and saving their topological features, were suggested. The paper describes the techniques developed and improved by the authors: the method of cleaning the image of distortions by means of iterative contrasting, based on the step-by-step increase in image contrast in the graph by 1%; the method of small entities distortion restoring, based on the thinning of the known matrix of contrast increase filter (the allowable dimensions of the nucleus dilution radius convolution matrix, which provide for the retention of the graph lines have been established; integration technique of the noise reduction method by means of contrasting and distortion restoring method of small entities with known σ-filter. Each method in the complex has been theoretically substantiated. The developed methods involve treatment of graph images as the entire image (global processing and its fragments (local processing. The metrics assessing the quality of the resulting image with the global and local processing have been chosen, the substantiation of the choice as well as the formulas have been given. The proposed complex methods of cleaning the graphs images of functions from grayscale image distortions is adaptive to the form of an image carrier, the distortion level in the image and its distribution. The presented results of testing the developed complex of methods for a representative sample of images confirm its effectiveness

Analytical electron microscope based on scanning transmission electron microscope with wavelength dispersive x-ray spectroscopy to realize highly sensitive elemental imaging especially for light elements