An Improved Linearization Circuit Used for Optical Rotary Encoders
Jovanović, Jelena; Denić, Dragan; Jovanović, Uglješa
2017-10-01
Optical rotary encoders generate nonlinear sine and cosine signals in response to a change of angular position that is being measured. Due to the nonlinear shape of encoder output signals, encoder sensitivity to very small changes of angular position is low, causing a poor measurement accuracy level. To improve the optical encoder sensitivity and to increase its accuracy, an improved linearization circuit based on pseudo-linear signal generation and its further linearization with the two-stage piecewise linear analog-to-digital converter is presented in this paper. The proposed linearization circuit is composed of a mixed-signal circuit, which generates analog pseudo-linear signal and determines the first four bits of the final digital result, and the two-stage piecewise linear analog-to-digital converter, which performs simultaneous linearization and digitalization of the pseudo-linear signal. As a result, the maximal value of the absolute measurement error equals to 3.77168·10-5 [rad] (0.00216°) over the full measurement range of 2π [rad].
Linear encoder based low frequency inertial sensor
Directory of Open Access Journals (Sweden)
Collette Christophe
2015-01-01
Full Text Available For many applications, there is an increasing demand for low cost, high-resolution inertial sensors, which are capable of operating in harsh environments. Recently, a prototype of small optical inertial sensor has been built, using a Michelson interferometer. A resolution of 3 pm/√Hz has been obtained above 4 Hz using only low cost components. Compared to most state-of-the-art devices, this prototype did not contain any coil, which offers several important advantages, including a low thermal noise in the suspension and a full compatibility with magnetic environments (like particle collider. On the other hand, the Michelson is known to be tricky to tune, especially when one attempts to miniaturize the sensor. In this paper, we will propose a novel concept of inertial sensor, based on a linear encoder. Compared to the Michelson, the encoder is much more easy to mount, and the calibration more stable. The price to pay is a reduced resolution. In order to overcome this limitation, we amplify mechanically the relative motion between the support and the inertial mass. First results obtained with the new sensor will be discussed, and compared with the Michelson inertial sensor.
An Improved Linearization Circuit Used for Optical Rotary Encoders
National Research Council Canada - National Science Library
Jelena Jovanović; Dragan Denić; Uglješa Jovanović
2017-01-01
.... To improve the optical encoder sensitivity and to increase its accuracy, an improved linearization circuit based on pseudo-linear signal generation and its further linearization with the two-stage...
Negative base encoding in optical linear algebra processors
Perlee, C.; Casasent, D.
1986-01-01
In the digital multiplication by analog convolution algorithm, the bits of two encoded numbers are convolved to form the product of the two numbers in mixed binary representation; this output can be easily converted to binary. Attention is presently given to negative base encoding, treating base -2 initially, and then showing that the negative base system can be readily extended to any radix. In general, negative base encoding in optical linear algebra processors represents a more efficient technique than either sign magnitude or 2's complement encoding, when the additions of digitally encoded products are performed in parallel.
Colored Range Searching in Linear Space
DEFF Research Database (Denmark)
Grossi, Roberto; Vind, Søren Juhl
2014-01-01
In colored range searching, we are given a set of n colored points in d ≥ 2 dimensions to store, and want to support orthogonal range queries taking colors into account. In the colored range counting problem, a query must report the number of distinct colors found in the query range, while...... an answer to the colored range reporting problem must report the distinct colors in the query range. We give the first linear space data structure for both problems in two dimensions (d = 2) with o(n) worst case query time. We also give the first data structure obtaining almost-linear space usage and o...
submitter Linear encoder based low frequency inertial sensor
Hellegouarch, Sylvain; Artoos, Kurt; Lambert, Pierre; Collette, Christophe
2016-01-01
In this article, we present a novel concept of inertial sensor, based on a linear encoder. Compared to other interferometric sensors, the encoder is much more easy to mount, and the calibration more stable. A prototype has been built and validated experimentally by comparison with a commercial seismometer. It has a resolution of about 10 pm/√Hz. In order to further improve the resolution, two concepts of mechanical amplifiers have been studied and compared. One of them is shown to be extremely promising, provided that the amplifier does not stiffen the sensor.
The encoding complexity of two dimensional range minimum data structures
DEFF Research Database (Denmark)
Brodal, Gerth Stølting; Brodnik, Andrej; Davoodi, Pooya
2013-01-01
of the encoding variant of the problem where queries have access to the constructed data structure but can not access the input matrix A, i.e. all information must be encoded in the data structure. Previously it was known how to solve the problem with space O(mn min {m,logn}) bits (and with constant query time......In the two-dimensional range minimum query problem an input matrix A of dimension m ×n, m ≤ n, has to be preprocessed into a data structure such that given a query rectangle within the matrix, the position of a minimum element within the query range can be reported. We consider the space complexity...
New low-cost dimensionally stable composite linear absolute position encoder scale
Hassler, William L., Jr.; Nakayama, Robert K.
1990-11-01
A major problem in the use of standard linear position encoders is that the etched glass scales they use have a coefficient of thermal expansion (C. T. E. ) of about 1 1 . Oppm/ C. This means that their position measurements drift with changes in environmental temperature proportional to their C. T. E. . A new low cost dimensionally stable composite scale was made for use in a new absolute linear position encoder. The unidirectional Polyphenylene Sulfide/AS4 carbon fiber composite material that this scale is made of was tested for dimensional stability with respect to changes in temperature humidity and creep. The C. T. E. of the scale material was measured to be nominally 0. 29 ppm/ C with a standard deviation of 0. 12 over the operating temperature range of -2 to 62 C. The overall displacement strain due to 98 moisture absorption relative to 0 moisture absorption was measured to be 9 ppm. The strain due to stress-relief creep was found to be a maximum of 3 ppm over a period of 173 days. These results show that a linear position encoder scale made of this material is superior to those made of the standard glass currently being used and more cost effective than fused silica for most applications. 1.
Straight to the point: how people encode linear discontinuations
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Rodrigo I. Mora
2012-12-01
Full Text Available Spatial discontinuations, as those found in cities and buildings, are everyday events. But, how do we encode and classify such misalignments? This is the topic of this paper. Twenty participants were asked to classify a total of 51 icons showing an upward-moving line being misaligned to the right, left and straight down. The results show that subjects were very sensitive to slight discontinuations occurring to vertical lines and that there was not exact symmetry between the left and right axis, meaning that the pieces slightly misaligned to the left were encoded differently than those misaligned to the right
Wavelength encoded fiber sensor for extreme temperature range
Barrera, D.; Finazzi, V.; Coviello, G.; Bueno, A.; Sales, S.; Pruneri, V.
2010-09-01
We have successfully created Chemical Composition Gratings (CCGs) into two different types of optical fiber: standard telecommunications Germanium doped fibers and photosensitive Germanium/Boron co-doped fibers. We have performed temperature cycles for analyzing the sensing properties and degradation or hysteresis with respect to the CCG sensors. The results show that CCG sensors based on Germanium/Boron co-doped photosensitive fiber have an almost linear response and negligible hysteresis effects, with a response of almost 100°C/s.
Qualification of HEIDENHAIN linear encoders for picometer resolution metrology in VTF Etalons
Halbgewachs, Clemens; Kentischer, Thomas J.; Sändig, Karsten; Baumgartner, Joerg; Bell, Alexander; Fischer, Andreas; Funk, Stefan; Heidecke, Frank; Scheiffelen, Thomas; Schmidt, Wolfgang; Spanner, Erwin; Speckbacher, Peter; von der Lühe, Oskar F.
2016-08-01
The Visible Tunable Filter (VTF) is a narrowband tunable instrument for imaging spectropolarimetry in the wavelength range between 520 and 870 nm. It is based on large-format Fabry Perots with a free aperture of 250 mm. The instrument will be one of the first-light instruments of the 4 m aperture Daniel K. Inoue Solar Telescope (DKIST) that is currently under construction on Maui (Hawaii). To provide stable and repeatable spectral scanning by tuning the air gap distance of the Etalons, a metrology system with 20 pm resolution and drift stability of better 100 pm per hour is needed. The integration of the metrology system must preserve the tight optical specifications of the Etalon plates. The HEIDENHAIN LIP 382 linear encoder system has a selected linear scale for low noise high signal interpolation. The signal period is 128nm and the interpolated signal from the sensor can be read out at 128 nm/ 14 bit = 7.8125 pm. To qualify the LIP 382 system for the VTF, we investigated the resolution and stability under nominal VTF operation conditions and verified a mounting concept for the sensor heads. We present results that demonstrate that the LIP 382 system fulfills the requirements for the VTF Etalons. We also present a design for the sensor head mounts.
The Front-End Readout as an Encoder IC for Magneto-Resistive Linear Scale Sensors.
Tran, Trong-Hieu; Chao, Paul Chang-Po; Chien, Ping-Chieh
2016-09-02
This study proposes a front-end readout circuit as an encoder chip for magneto-resistance (MR) linear scales. A typical MR sensor consists of two major parts: one is its base structure, also called the magnetic scale, which is embedded with multiple grid MR electrodes, while another is an "MR reader" stage with magnets inside and moving on the rails of the base. As the stage is in motion, the magnetic interaction between the moving stage and the base causes the variation of the magneto-resistances of the grid electrodes. In this study, a front-end readout IC chip is successfully designed and realized to acquire temporally-varying resistances in electrical signals as the stage is in motions. The acquired signals are in fact sinusoids and co-sinusoids, which are further deciphered by the front-end readout circuit via newly-designed programmable gain amplifiers (PGAs) and analog-to-digital converters (ADCs). The PGA is particularly designed to amplify the signals up to full dynamic ranges and up to 1 MHz. A 12-bit successive approximation register (SAR) ADC for analog-to-digital conversion is designed with linearity performance of ±1 in the least significant bit (LSB) over the input range of 0.5-2.5 V from peak to peak. The chip was fabricated by the Taiwan Semiconductor Manufacturing Company (TSMC) 0.35-micron complementary metal oxide semiconductor (CMOS) technology for verification with a chip size of 6.61 mm², while the power consumption is 56 mW from a 5-V power supply. The measured integral non-linearity (INL) is -0.79-0.95 LSB while the differential non-linearity (DNL) is -0.68-0.72 LSB. The effective number of bits (ENOB) of the designed ADC is validated as 10.86 for converting the input analog signal to digital counterparts. Experimental validation was conducted. A digital decoder is orchestrated to decipher the harmonic outputs from the ADC via interpolation to the position of the moving stage. It was found that the displacement measurement error is within
The Front-End Readout as an Encoder IC for Magneto-Resistive Linear Scale Sensors
Directory of Open Access Journals (Sweden)
Trong-Hieu Tran
2016-09-01
Full Text Available This study proposes a front-end readout circuit as an encoder chip for magneto-resistance (MR linear scales. A typical MR sensor consists of two major parts: one is its base structure, also called the magnetic scale, which is embedded with multiple grid MR electrodes, while another is an “MR reader” stage with magnets inside and moving on the rails of the base. As the stage is in motion, the magnetic interaction between the moving stage and the base causes the variation of the magneto-resistances of the grid electrodes. In this study, a front-end readout IC chip is successfully designed and realized to acquire temporally-varying resistances in electrical signals as the stage is in motions. The acquired signals are in fact sinusoids and co-sinusoids, which are further deciphered by the front-end readout circuit via newly-designed programmable gain amplifiers (PGAs and analog-to-digital converters (ADCs. The PGA is particularly designed to amplify the signals up to full dynamic ranges and up to 1 MHz. A 12-bit successive approximation register (SAR ADC for analog-to-digital conversion is designed with linearity performance of ±1 in the least significant bit (LSB over the input range of 0.5–2.5 V from peak to peak. The chip was fabricated by the Taiwan Semiconductor Manufacturing Company (TSMC 0.35-micron complementary metal oxide semiconductor (CMOS technology for verification with a chip size of 6.61 mm2, while the power consumption is 56 mW from a 5-V power supply. The measured integral non-linearity (INL is −0.79–0.95 LSB while the differential non-linearity (DNL is −0.68–0.72 LSB. The effective number of bits (ENOB of the designed ADC is validated as 10.86 for converting the input analog signal to digital counterparts. Experimental validation was conducted. A digital decoder is orchestrated to decipher the harmonic outputs from the ADC via interpolation to the position of the moving stage. It was found that the displacement
The Role of Data Range in Linear Regression
da Silva, M. A. Salgueiro; Seixas, T. M.
2017-09-01
Measuring one physical quantity as a function of another often requires making some choices prior to the measurement process. Two of these choices are: the data range where measurements should focus and the number (n) of data points to acquire in the chosen data range. Here, we consider data range as the interval of variation of the independent variable (x) that is associated with a given interval of variation of the dependent variable (y). We analyzed the role of the width and lower endpoint of measurement data range on parameter estimation by linear regression. We show that, when feasible, increasing data range width is more effective than increasing the number of data points on the same data range in reducing the uncertainty in the slope of a regression line. Moreover, the uncertainty in the intercept of a regression line depends not only on the number of data points but also on the ratio between the lower endpoint and the width of the measurement data range, reaching its minimum when the dataset is centered at the ordinate axis. Since successful measurement methodologies require a good understanding of factors ruling data analysis, it is pedagogically justified and highly recommended to teach these two subjects alongside each other.
A novel encoding scheme for effective biometric discretization: Linearly Separable Subcode.
Lim, Meng-Hui; Teoh, Andrew Beng Jin
2013-02-01
Separability in a code is crucial in guaranteeing a decent Hamming-distance separation among the codewords. In multibit biometric discretization where a code is used for quantization-intervals labeling, separability is necessary for preserving distance dissimilarity when feature components are mapped from a discrete space to a Hamming space. In this paper, we examine separability of Binary Reflected Gray Code (BRGC) encoding and reveal its inadequacy in tackling interclass variation during the discrete-to-binary mapping, leading to a tradeoff between classification performance and entropy of binary output. To overcome this drawback, we put forward two encoding schemes exhibiting full-ideal and near-ideal separability capabilities, known as Linearly Separable Subcode (LSSC) and Partially Linearly Separable Subcode (PLSSC), respectively. These encoding schemes convert the conventional entropy-performance tradeoff into an entropy-redundancy tradeoff in the increase of code length. Extensive experimental results vindicate the superiority of our schemes over the existing encoding schemes in discretization performance. This opens up possibilities of achieving much greater classification performance with high output entropy.
DEFF Research Database (Denmark)
Argeseanu, Alin; Ritchie, Ewen; Leban, Krisztina Monika
2009-01-01
This paper proposes an optimized version of a new absolute linear encoder (ALE). The innovative ALE can be used for long distance applications (more then 150m) and the accuracy of the measurements is 0.5mm. To obtain these performances the ALE uses a new coding algorithm. This new coding algorithm...... made in the coding algorithm, in the ruler topology and in the dedicated software. The optimized ALE is a robust device able to work in industrial environment, with a high level of vibrations. By this reason it is ideal for the transport system control in automating manufacturing processes, intelligent...
Extending the range of linear scheduling in highway construction
Bafna, Tarun
1991-01-01
Linear Scheduling Method is a powerful graphical scheduling method which is best suited for scheduling projects involving repetitive activities. Highway construction projects are excellent examples of projects displaying repetitive characteristics. The research explores usefulness of linear scheduling in highway construction. The Linear Scheduling Method (LSM) was implemented in the field to schedule highway projects. Problems encountered during the field experience were studied and res...
A correction method of encoder bias in satellite laser ranging system
Directory of Open Access Journals (Sweden)
Wang Peiyuan
2013-08-01
Full Text Available In a satellite laser ranging telescope system, well-aligned encoders of the elevation and azimuth axes are essential for tracking objects. However, it is very difficult and time-consuming to correct the bias between the absolute-position indices of the encoders and the astronomical coordinates, especially in the absence of a finder scope for our system. To solve this problem, a method is presented based on the phenomenon that all stars move anti-clockwise around Polaris in the northern hemisphere. Tests of the proposed adjustment procedure in a satellite laser ranging (SLR system demonstrated the effectiveness and the time saved by using the approach, which greatly facilitates the optimization of a tracking system.
The Role of Data Range in Linear Regression
da Silva, M. A. Salgueiro; Seixas, T. M.
2017-01-01
Measuring one physical quantity as a function of another often requires making some choices prior to the measurement process. Two of these choices are: the data range where measurements should focus and the number (n) of data points to acquire in the chosen data range. Here, we consider data range as the interval of variation of the independent…
Directory of Open Access Journals (Sweden)
Laurent Bosquet
2010-09-01
Full Text Available The aim of this study was to assess the validity and accuracy of a commercial linear encoder (Musclelab, Ergotest, Norway to estimate Bench press 1 repetition maximum (1RM from the force - velocity relationship. Twenty seven physical education students and teachers (5 women and 22 men with a heterogeneous history of strength training participated in this study. They performed a 1 RM test and a force - velocity test using a Bench press lifting task in a random order. Mean 1 RM was 61.8 ± 15.3 kg (range: 34 to 100 kg, while 1 RM estimated by the Musclelab's software from the force-velocity relationship was 56.4 ± 14.0 kg (range: 33 to 91 kg. Actual and estimated 1 RM were very highly correlated (r = 0.93, p<0.001 but largely different (Bias: 5.4 ± 5.7 kg, p < 0.001, ES = 1.37. The 95% limits of agreement were ±11.2 kg, which represented ±18% of actual 1 RM. It was concluded that 1 RM estimated from the force-velocity relationship was a good measure for monitoring training induced adaptations, but also that it was not accurate enough to prescribe training intensities. Additional studies are required to determine whether accuracy is affected by age, sex or initial level.
Design considerations of a linear generator for a range extender application
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Seo Un-Jae
2015-12-01
Full Text Available The free piston linear generator is a new range extender concept for the application in a full electric vehicle. The free piston engine driven linear generators can achieve high efficiency at part and full load which is suitable for the range extender application. This paper presents requirements for designing a linear generator deduced from a basic analysis of a free piston linear generator.
Directory of Open Access Journals (Sweden)
Mark Ospeck
Full Text Available Mammalian auditory nerve fibers (ANF are remarkable for being able to encode a 40 dB, or hundred fold, range of sound pressure levels into their firing rate. Most of the fibers are very sensitive and raise their quiescent spike rate by a small amount for a faint sound at auditory threshold. Then as the sound intensity is increased, they slowly increase their spike rate, with some fibers going up as high as ∼300 Hz. In this way mammals are able to combine sensitivity and wide dynamic range. They are also able to discern sounds embedded within background noise. ANF receive efferent feedback, which suggests that the fibers are readjusted according to the background noise in order to maximize the information content of their auditory spike trains. Inner hair cells activate currents in the unmyelinated distal dendrites of ANF where sound intensity is rate-coded into action potentials. We model this spike generator compartment as an attenuator that employs fast negative feedback. Input current induces rapid and proportional leak currents. This way ANF are able to have a linear frequency to input current (f-I curve that has a wide dynamic range. The ANF spike generator remains very sensitive to threshold currents, but efferent feedback is able to lower its gain in response to noise.
Oosterbroek, M.; Mellema, J.; Lopulissa, J.S.
1981-01-01
Linear viscoelasticity of emulsions in shear deformation in the kilohertz range is demonstrated experimentally. In order to avoid complications due to inertia effects, emulsions with small droplet sizes are studied. The preliminary measurements are interpreted as being the result of droplet
pEVL: A Linear Plasmid for Generating mRNA IVT Templates With Extended Encoded Poly(A Sequences
Directory of Open Access Journals (Sweden)
Alexandra E Grier
2016-01-01
Full Text Available Increasing demand for large-scale synthesis of in vitro transcribed (IVT mRNA is being driven by the increasing use of mRNA for transient gene expression in cell engineering and therapeutic applications. An important determinant of IVT mRNA potency is the 3′ polyadenosine (poly(A tail, the length of which correlates with translational efficiency. However, present methods for generation of IVT mRNA rely on templates derived from circular plasmids or PCR products, in which homopolymeric tracts are unstable, thus limiting encoded poly(A tail lengths to ≃120 base pairs (bp. Here, we have developed a novel method for generation of extended poly(A tracts using a previously described linear plasmid system, pJazz. We find that linear plasmids can successfully propagate poly(A tracts up to ≃500 bp in length for IVT mRNA production. We then modified pJazz by removing extraneous restriction sites, adding a T7 promoter sequence upstream from an extended multiple cloning site, and adding a unique type-IIS restriction site downstream from the encoded poly(A tract to facilitate generation of IVT mRNA with precisely defined encoded poly(A tracts and 3′ termini. The resulting plasmid, designated pEVL, can be used to generate IVT mRNA with consistent defined lengths and terminal residue(s.
Jenstad, L M; Pumford, J; Seewald, R C; Cornelisse, L E
2000-02-01
The goal of this study was to test the theoretical advantages of a single-channel wide dynamic range compression (WDRC) circuit fitted using the DSL method for increased dynamic range and normalized loudness growth. Ten adolescents and young adults with moderate to severe sensorineural hearing loss were fitted monaurally with the Siemens Viva 2 Pro behind-the-ear instrument set to DSL 4.0 targets for both linear gain and WDRC processing. Threshold, upper limit of comfort and loudness growth were measured in the unaided, linear gain and WDRC conditions for warble tones, environmental sounds and speech. Twelve adult listeners with normal hearing also were tested monaurally in the unaided condition to provide normative data for comparison purposes. The WDRC hearing aid provided a greater input dynamic range than the linear circuit for all stimuli. The dynamic range was normalized for more subjects with the WDRC than the linear hearing aid. In addition, exponential loudness growth functions fitted to the loudness growth data showed that, on average, loudness growth was more normalized with the WDRC hearing aid fitted to DSL[i/o] targets than the linear hearing aid fitted to DSL[i/o] targets. WDRC processing, fitted using the DSL[i/o] method, has potential applications in hearing aid fittings for listeners with moderate to severe hearing loss because it provides an audible, comfortable and tolerable amplified signal across a wider range of inputs than linear gain processing, without the need for volume control adjustments.
Screening methods for linear-scaling short-range hybrid calculations on CPU and GPU architectures.
Beuerle, Matthias; Kussmann, Jörg; Ochsenfeld, Christian
2017-04-14
We present screening schemes that allow for efficient, linear-scaling short-range exchange calculations employing Gaussian basis sets for both CPU and GPU architectures. They are based on the LinK [C. Ochsenfeld et al., J. Chem. Phys. 109, 1663 (1998)] and PreLinK [J. Kussmann and C. Ochsenfeld, J. Chem. Phys. 138, 134114 (2013)] methods, but account for the decay introduced by the attenuated Coulomb operator in short-range hybrid density functionals. Furthermore, we discuss the implementation of short-range electron repulsion integrals on GPUs. The introduction of our screening methods allows for speedups of up to a factor 7.8 as compared to the underlying linear-scaling algorithm, while retaining full numerical control over the accuracy. With the increasing number of short-range hybrid functionals, our new schemes will allow for significant computational savings on CPU and GPU architectures.
Zook, D.R; Bruins, A.P.
The ion transmission in Electrospray (Ionspray) Mass Spectrometry (ESMS) was studied in order to examine the instrumental factors potentially contributing to observed ESMS linear dynamic range (LDR) limitations. A variety of means used for the investigation of ion transmission demonstrated that a
Application of range-test in multiple linear regression analysis in ...
African Journals Online (AJOL)
Application of range-test in multiple linear regression analysis in the presence of outliers is studied in this paper. First, the plot of the explanatory variables (i.e. Administration, Social/Commercial, Economic services and Transfer) on the dependent variable (i.e. GDP) was done to identify the statistical trend over the years.
Comparison of performance with wide dynamic range compression and linear amplification.
Kam, A C; Wong, L L
1999-09-01
This study compared subject performance and preference using a compression-limiting hearing aid set to linear amplification (program 1) and wide dynamic range compression (WDRC, program 2). The frequency responses of the hearing aid were matched to a 65 dB SPL signal and maximum output to a 90 dB SPL signal. Twenty subjects with moderate to moderately severe sensorineural hearing loss were tested. Speech recognition scores and speech reception thresholds were obtained both in quiet and in noise. Subjective preference for WDRC or linear amplification was measured via a paired-comparison procedure on "loudness appropriateness," "clarity," and "pleasantness" to continuous discourse presented in quiet and in noise. Results suggested that WDRC yielded better speech intelligibility in quiet for low-level signals and no difference in speech intelligibility in noise compared to linear amplification. Subjects preferred WDRC for loudness to both high- and low-level signals and for pleasantness to high-level signals.
Jenstad, L M; Seewald, R C; Cornelisse, L E; Shantz, J
1999-04-01
The goal of this study was to test the theoretical advantages of a single-channel wide dynamic range compression (WDRC) circuit for speech intelligibility and loudness comfort for five speech spectra. Twelve adolescents and young adults with moderate to severe hearing loss were fitted with the Siemens Viva 2 Pro behind-the-ear instrument set to DSL 4.0 targets for both linear gain and WDRC processing. Speech intelligibility was measured in the unaided, linear gain and WDRC conditions using two tasks in quiet: nonsense words and sentences. The items were digitally filtered to represent five speech spectra: average speech at 4 m, average speech at 1 m, own voice at ear level, classroom at 1 m, and shouted speech at 1 m. The subjects also rated the loudness of each hearing aid/speech spectrum combination using a categorical rating scale. Both the linear gain and WDRC settings provided improved speech recognition relative to the unaided condition, and the two circuits resulted in equivalent performance for average speech input levels. On average, the WDRC aid resulted in high and uniform speech recognition scores across the five spectra. In contrast, the linear gain aid resulted in a lower recognition score for soft speech and shouted speech relative to that obtained with an average speech level. Analysis of individual speech recognition benefit scores revealed that 11 out of 12 subjects had equal or greater performance with the WDRC processing than the linear processing. Subjective loudness ratings in the linear gain condition were compatible with decreased sensation level for soft speech and loudness discomfort for shouted speech. WDRC processing has potential applications in hearing aid fittings for listeners with moderate to severe hearing loss because it provides a consistently audible and comfortable signal across a wide range of listening conditions in quiet without the need for volume control adjustments.
A convection-driven long-range linear gradient generator with dynamic control.
Wang, Hao; Chen, Chia-Hung; Xiang, Zhuolin; Wang, Ming; Lee, Chengkuo
2015-03-21
We developed a novel gradient generator to achieve long range and linear chemical gradients with a dynamic control function. The length of the gradient can be on the centimetre scale. The gradient profile can be tuned by changing the flow rates. The device can work in both high flow rate regimes with large shear stress and low flow rate regimes with minimum shear stress. The drug screening function was demonstrated by the viability test of PC-9 cancer cells.
Directory of Open Access Journals (Sweden)
Li Yuqing
2015-06-01
Full Text Available Satellite range scheduling with the priority constraint is one of the most important problems in the field of satellite operation. This paper proposes a station coding based genetic algorithm to solve this problem, which adopts a new chromosome encoding method that arranges tasks according to the ground station ID. The new encoding method contributes to reducing the complexity in conflict checking and resolving, and helps to improve the ability to find optimal resolutions. Three different selection operators are designed to match the new encoding strategy, namely random selection, greedy selection, and roulette selection. To demonstrate the benefits of the improved genetic algorithm, a basic genetic algorithm is designed in which two cross operators are presented, a single-point crossover and a multi-point crossover. For the purpose of algorithm test and analysis, a problem-generating program is designed, which can simulate problems by modeling features encountered in real-world problems. Based on the problem generator, computational results and analysis are made and illustrated for the scheduling of multiple ground stations.
Du, Junwei; Bai, Xiaowei; Gola, Alberto; Acerbi, Fabio; Ferri, Alessandro; Piemonte, Claudio; Yang, Yongfeng; Cherry, Simon R
2018-01-11
The goal of this study was to exploit the excellent spatial resolution characteristics of a position-sensitive silicon photomultiplier (SiPM) and develop a high-resolution depth-of-interaction (DOI) encoding positron emission tomography (PET) detector module. The detector consists of a 30 x 30 array of 0.445 mm x 0.445 mm x 20 mm polished LYSO crystals coupled to two 15.5 mm x 15.5 mm linearly-graded SiPM (LG-SiPM) arrays at both ends. The flood histograms show that all the crystals in the LYSO array can be resolved. The energy resolution, the coincidence timing resolution and the DOI resolution were 21.8 ± 5.8 %, 1.23 ± 0.10 ns and 3.8 ± 1.2 mm, respectively, at a temperature of - 10 °C and a bias voltage of 35.0 V. The performance did not degrade significantly for event rates of up to 130,000 counts per second. This detector represents an attractive option for small-bore PET scanner designs that simultaneously emphasize high spatial resolution and high detection efficiency, important, for example, in preclinical imaging of the rodent brain with neuroreceptor ligands. © 2018 Institute of Physics and Engineering in Medicine.
Aneesh, R; Khijwania, Sunil K
2011-09-20
The main objective of the present work is to develop an optical fiber relative humidity (RH) sensor having a linear response throughout over the widest possible dynamic range. We report an optical fiber RH sensor based on the evanescent wave absorption spectroscopy that fulfills this objective. The fiber sensor employs a specific nanoparticle (zinc oxide) doped sol-gel nanostructured sensing film of optimum thickness, synthesized over a short length of a centrally decladded straight and uniform optical fiber. A detailed experimental investigation is carried out to analyze the sensor response/characteristics. Fiber sensor response is observed to be linear throughout the dynamic range as wide as 4% to 96% RH. The observed linear sensitivity for the fiber sensor is 0.0012 RH(-1). The average response time of the reported sensor is observed to be as short as 0.06 s during the humidification. In addition, the sensor exhibited a very good degree of reversibility and extremely high reliability as well as repeatability.
Long-range correlation in synchronization and syncopation tapping: a linear phase correction model.
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Didier Delignières
Full Text Available We propose in this paper a model for accounting for the increase in long-range correlations observed in asynchrony series in syncopation tapping, as compared with synchronization tapping. Our model is an extension of the linear phase correction model for synchronization tapping. We suppose that the timekeeper represents a fractal source in the system, and that a process of estimation of the half-period of the metronome, obeying a random-walk dynamics, combines with the linear phase correction process. Comparing experimental and simulated series, we show that our model allows accounting for the experimentally observed pattern of serial dependence. This model complete previous modeling solutions proposed for self-paced and synchronization tapping, for a unifying framework of event-based timing.
A high sensitive 66 dB linear dynamic range receiver for 3-D laser radar
Ma, Rui; Zheng, Hao; Zhu, Zhangming
2017-08-01
This study presents a CMOS receiver chip realized in 0.18 μm standard CMOS technology and intended for high precision 3-D laser radar. The chip includes an adjustable gain transimpedance pre-amplifier, a post-amplifier and two timing comparators. An additional feedback is employed in the regulated cascode transimpedance amplifier to decrease the input impedance, and a variable gain transimpedance amplifier controlled by digital switches and analog multiplexer is utilized to realize four gain modes, extending the input dynamic range. The measurement shows that the highest transimpedance of the channel is 50 k {{Ω }}, the uncompensated walk error is 1.44 ns in a wide linear dynamic range of 66 dB (1:2000), and the input referred noise current is 2.3 pA/\\sqrt{{Hz}} (rms), resulting in a very low detectable input current of 1 μA with SNR = 5.
High Dynamic Range RF Front End with Noise Cancellation and Linearization for WiMAX Receivers
Directory of Open Access Journals (Sweden)
J.-M. Wu
2012-06-01
Full Text Available This research deals with verification of the high dynamic range for a heterodyne radio frequency (RF front end. A 2.6 GHz RF front end is designed and implemented in a hybrid microwave integrated circuit (HMIC for worldwide interoperability for microwave access (WiMAX receivers. The heterodyne RF front end consists of a low-noise amplifier (LNA with noise cancellation, an RF bandpass filter (BPF, a downconverter with linearization, and an intermediate frequency (IF BPF. A noise canceling technique used in the low-noise amplifier eliminates a thermal noise and then reduces the noise figure (NF of the RF front end by 0.9 dB. Use of a downconverter with diode linearizer also compensates for gain compression, which increases the input-referred third-order intercept point (IIP3 of the RF front end by 4.3 dB. The proposed method substantially increases the spurious-free dynamic range (DRf of the RF front end by 3.5 dB.
A high dynamic range linear RF power detector with a preceding LNA
Yingbo, Dai; Kefeng, Han; Na, Yan; Xi, Tan
2012-01-01
A design of high dynamic range linear radio frequency power detector (PD), aimed for transmitter carrier leakage suppression is presented in this paper. Based on the logarithmic amplifier principle, this detector utilizes the successive detection method to achieve a high dynamic range in the radio frequency band. In order to increase sensitivity, a low noise amplifier (LNA) is placed in the front of this detector. DC coupling is adopted in this architecture to reduce parasitics and save area, but this will unavoidably cause DC offsets in the circuit which are detrimental to the dynamic range. So a DC offset cancelling (DCOC) technique is proposed to solve the problem. Finally, this detector was fabricated in the SMIC 0.13 μm CMOS process. The measured results show that it achieves a wide dynamic range of 50 dB/40 dB with log errors in ±1 dB at 900 MHz/2 GHz, while draws 16 mA from a 1.5 V power supply. The active chip area is 0.27 × 0.67 mm2.
Linear-Space Data Structures for Range Mode Query in Arrays
DEFF Research Database (Denmark)
Chan, Timothy M.; Durocher, Stephane; Larsen, Kasper Green
2012-01-01
A mode of a multiset S is an element a in S of maximum multiplicity; that is, a occurs at least as frequently as any other element in S. Given an array A[1:n] of n elements, we consider a basic problem: constructing a static data structure that efficiently answers range mode queries on A. Each...... query consists of an input pair of indices (i, j) for which a mode of A[i:j] must be returned. The best previous data structure with linear space, by Krizanc, Morin, and Smid (ISAAC 2003), requires O(sqrt(n) loglog n) query time. We improve their result and present an O(n)-space data structure...... that supports range mode queries in O(sqrt(n / log n)) worst-case time. Furthermore, we present strong evidence that a query time significantly below sqrt(n) cannot be achieved by purely combinatorial techniques; we show that boolean matrix multiplication of two sqrt(n) by sqrt(n) matrices reduces to n range...
Linear-Space Data Structures for Range Mode Query in Arrays
DEFF Research Database (Denmark)
Chan, Timothy M.; Durocher, Stephane; Larsen, Kasper Green
2014-01-01
A mode of a multiset S is an element a in S of maximum multiplicity; that is, a occurs at least as frequently as any other element in S. Given an array A[1:n] of n elements, we consider a basic problem: constructing a static data structure that efficiently answers range mode queries on A. Each...... query consists of an input pair of indices (i, j) for which a mode of A[i:j] must be returned. The best previous data structure with linear space, by Krizanc, Morin, and Smid (ISAAC 2003), requires O(sqrt(n) loglog n) query time. We improve their result and present an O(n)-space data structure...... that supports range mode queries in O(sqrt(n / log n)) worst-case time. Furthermore, we present strong evidence that a query time significantly below sqrt(n) cannot be achieved by purely combinatorial techniques; we show that boolean matrix multiplication of two sqrt(n) by sqrt(n) matrices reduces to n range...
A linear piezoelectric stepper motor with submicrometer step size and centimeter travel range.
Judy, J W; Polla, D L; Robbins, W P
1990-01-01
A linear stepper motor capable of submicrometer controlled movement has been constructed using the piezoelectric material lead zirconate titanate (PZT). This motor consists of a 25.4-mmx12.7-mmx1.6-mm piezoelectric driving element connected between a glider base and an attached load. The device is inset in a trench to constrain motion to one dimension. An electrode on the bottom of the glider is used with an electrode on the top of the trench to implement an electrostatic clamp. This clamp enables the stepper motor to climb slopes of up to 12 degrees , whereas without the clamp only slopes of 6 degrees or less are tolerated. A linear inertial sliding motion can be achieved by expanding and contracting the piezoelectric bar, but the addition of the electrostatic clamp enhances the movement capabilities of the glider by the periodic clamping and unclamping of the glider. Glider velocities of 5.7-476 mum/s are measured by timing the movement of the glider over a 1.0-mm portion of the track through an optical microscope. Displacement steps of 0.07-1.1 mum are calculated by dividing the measured glider velocity by the frequency of the applied voltage pulses. Displacement step size and glider velocity are controlled by the application of PZT extension voltages ranging from +/-(60-340) V.
Yund, E William; Roup, Christina M; Simon, Helen J; Bowman, Glen A
2006-01-01
Acclimatization was studied in hearing-impaired patients with no previous hearing aid (HA) experience who were fit bilaterally with either wide dynamic range multichannel compression (WDRMCC) or linear amplification (LA) HAs. Throughout 40 weeks of normal HA use, we monitored changes in nonsense syllable perception in speech-spectrum noise. Syllable recognition for WDRMCC users improved by 4.6% over the first 8 weeks, but the 2.2% improvement for LA users was complete in 2 to 4 weeks. Consonant confusion analyses indicated that WDRMCC experience facilitated consonant identification, while LA users primarily changed their response biases. Furthermore, WDRMCC users showed greater improvement for aided than unaided stimuli, while LA users did not. These results demonstrate acclimatization in new users of WDRMCC HAs but not in new users of LA HAs. A switch in amplification type after 32 weeks produced minimal performance change. Thus, acclimatization depended on the type of amplification and the previous amplification experience.
Non-linear characteristics and long-range correlations in Asian stock markets
Jiang, J.; Ma, K.; Cai, X.
2007-05-01
We test several non-linear characteristics of Asian stock markets, which indicates the failure of efficient market hypothesis and shows the essence of fractal of the financial markets. In addition, by using the method of detrended fluctuation analysis (DFA) to investigate the long range correlation of the volatility in the stock markets, we find that the crossover phenomena exist in the results of DFA. Further, in the region of small volatility, the scaling behavior is more complicated; in the region of large volatility, the scaling exponent is close to 0.5, which suggests the market is more efficient. All these results may indicate the possibility of characteristic multifractal scaling behaviors of the financial markets.
Wrigley, Christopher James (Inventor); Hancock, Bruce R. (Inventor); Newton, Kenneth W. (Inventor); Cunningham, Thomas J. (Inventor)
2014-01-01
An analog-to-digital converter (ADC) converts pixel voltages from a CMOS image into a digital output. A voltage ramp generator generates a voltage ramp that has a linear first portion and a non-linear second portion. A digital output generator generates a digital output based on the voltage ramp, the pixel voltages, and comparator output from an array of comparators that compare the voltage ramp to the pixel voltages. A return lookup table linearizes the digital output values.
Analog Encoding Voltage—A Key to Ultra-Wide Dynamic Range and Low Power CMOS Image Sensor
Directory of Open Access Journals (Sweden)
Orly Yadid-Pecht
2013-03-01
Full Text Available Usually Wide Dynamic Range (WDR sensors that autonomously adjust their integration time to fit intra-scene illumination levels use a separate digital memory unit. This memory contains the data needed for the dynamic range. Motivated by the demands for low power and chip area reduction, we propose a different implementation of the aforementioned WDR algorithm by replacing the external digital memory with an analog in-pixel memory. This memory holds the effective integration time represented by analog encoding voltage (AEV. In addition, we present a “ranging” scheme of configuring the pixel integration time in which the effective integration time is configured at the first half of the frame. This enables a substantial simplification of the pixel control during the rest of the frame and thus allows for a significantly more remarkable DR extension. Furthermore, we present the implementation of “ranging” and AEV concepts on two different designs, which are targeted to reach five and eight decades of DR, respectively. We describe in detail the operation of both systems and provide the post-layout simulation results for the second solution. The simulations show that the second design reaches DR up to 170 dBs. We also provide a comparative analysis in terms of the number of operations per pixel required by our solution and by other widespread WDR algorithms. Based on the calculated results, we conclude that the proposed two designs, using “ranging” and AEV concepts, are attractive, since they obtain a wide dynamic range at high operation speed and low power consumption.
DEFF Research Database (Denmark)
Gran, Fredrik; Jensen, Jørgen Arendt
2005-01-01
, thus, be avoided. To further increase the transmitted energy, the excitation waveforms are designed as linear frequency modulated (FM) signals. This makes it possible to maintain the full excitation amplitude during most of the transmission. The design of the separation filters will also be discussed....... The method was tested using the experimental ultrasound scanner RASMUS and evaluated using a reference setup with a linear FM excitation waveform and STA beamforming. The point spread function (PSF) was measured on a wire phantom in water. A wire phantom with an attenuating medium was also measured, where...
A fully integrated CMOS VCXO-IC with low phase noise, wide tuning range and high tuning linearity
Yanjun, Yang; Yun, Zeng
2015-06-01
This paper describes a low phase noise, wide tuning range and high tuning linearity CMOS voltage controlled crystal oscillator IC (VCXO-IC) with LVCMOS and LVPECL output. A differential coupled frequency doubling Colpitts oscillator is adopted to obtain low noise 2× frequency output. Wide tuning range and high linearity are simultaneously achieved by using MOS varactor arrays. The measurement results show that the designed VCXO-IC achieves -134 dBc/Hz phase noise at 1 kHz offset frequency and ± 135 ppm output frequency tuning range within 3% linearity by using 40 MHz fundamental AT-cut crystal. The VCXO-IC is fabricated in the chartered 0.35 μm standard CMOS process and occupies a total silicon area of 2.4 mm2. Project supported by the National Natural Science Foundation of China (No. 61350007).
Plasma studies of a linear magnetron operating in the range from DC to HiPIMS
Anders, André; Yang, Yuchen
2018-01-01
Plasma properties of magnetrons have been extensively studied in the past with the focus on small, research-style magnetrons with planar disk targets. In this contribution, we report on plasma diagnostics of a linear magnetron because the linear geometry is widely used in industry and, more importantly here, it provides the unique opportunity to align a linear racetrack section with a streak camera's entrance slit. This allows us to follow the evolution of plasma instabilities, i.e., localized ionization zones or spokes, as they travel along the racetrack. This report greatly extends our more limited and focused study on the structure and velocity of spokes [Anders and Yang, Appl. Phys. Lett. 111, 064103 (2017)]. Following recent plasma potential measurements [Panjan and Anders, J. Appl. Phys. 121, 063302 (2017)], we interpret optical emission information with localized electron heating. We confirm that for low direct current operation, spokes move in the -E ×B direction, and in the opposite direction in the high current mode. Streak images indicate slower spoke velocities near corners compared to spoke velocities in the straight sections of the racetrack. Spoke splitting and merging are observed supporting the interpretation that spoke motion represents a phase velocity of the region of greatest ionization and is not a motion of plasma. Fast camera investigations are supplemented by measurements of the energy distribution functions of ions emitted from the straight and curved regions of the racetrack, showing notable and reproducible differences.
Aneesh, R; Khijwania, Sunil K
2013-08-01
An all-optical humidity sensor based on direct and exhaustive guided-mode attenuation in an in-house developed zinc oxide (ZnO) nanoparticle-immobilized bare solgel fiber is reported. The main objective of the present work is to enhance the sensitivity considerably while realizing a throughout linear response over a wide dynamic range. The developed sensor is characterized and performance characteristics of the sensor are compared with an optical fiber humidity sensor employing an evanescent wave absorption scheme in a straight and uniform probe, with ZnO nanoparticles-immobilized solgel film as humidity sensing cladding. Sensor response is observed to be linear over a wide dynamic range of 5%-95% relative humidity (RH). The observed linear sensitivity is 0.0103/% RH, which is ~9 times higher than the sensor employing the evanescent wave absorption scheme. In addition, sensor response is observed to be very fast, highly reversible, and repeatable.
Multi-Bit Sigma-Delta Modulators with Enhanced Dynamic Range using Non-Linear DAC for Hearing Aids
DEFF Research Database (Denmark)
Custòdio, José; Paulino, Nuno; Goes, João
2008-01-01
This paper presents the possibility of employing non-linear low-resolution DACs in the feedback paths of multi-bit second-order Sigma-Delta modulators. The proposed technique is particularly attractive in applications such as hearing aids, requiring a very large dynamic range and medium signal...
M-Estimators in Linear Models with Long Range Dependent Errors
1990-02-01
4) below. Proof To simplify writing, let a := AN l c N i , bi := BNlCNi , 1 < i < N. Now, by the absolute continuity of 7p, the Fubini Theorem and...are of the order 0 p(N 1 /2) and hence one must have AN = Ni / 2 . Note that, in view of the Ergodic Theorem , the first term in the above approximation...linearity of S. The following theorem gives a set of sufficient conditions for such a result to hold. It also gives the required approximation to M
Bird population trends are linearly affected by climate change along species thermal ranges
National Research Council Canada - National Science Library
Frédéric Jiguet; Vincent Devictor; Richard Ottvall; Chris Van Turnhout; Henk Van der Jeugd; Åke Lindström
2010-01-01
Beyond the effects of temperature increase on local population trends and on species distribution shifts, how populations of a given species are affected by climate change along a species range is still unclear...
DEFF Research Database (Denmark)
Hedegård, Erik D.; Olsen, Jógvan Magnus Haugaard; Knecht, Stefan
2015-01-01
-MC-srDFT is designed to combine efficient treatment of complicated electronic structures with inclusion of effects from the surrounding environment. The environmental effects encompass classical electrostatic interactions as well as polarization of both the quantum region and the environment. Using response theory......, molecular properties such as excitation energies and oscillator strengths can be obtained. The PE-MC-srDFT method and the additional terms required for linear response have been implemented in a development version of Dalton. To benchmark the PE-MC-srDFT approach against the literature data, we have...... investigated the low-lying electronic excitations of acetone and uracil, both immersed in water solution. The PE-MC-srDFT results are consistent and accurate, both in terms of the calculated solvent shift and, unlike regular PE-MCSCF, also with respect to the individual absolute excitation energies...
Nanoposition sensors with superior linear response to position and unlimited travel ranges
Lee, Sheng-Chiang; Peters, Randall D.
2009-04-01
With the advancement in nanotechnology, the ability of positioning/measuring at subnanometer scale has been one of the most critical issues for the nanofabrication industry and researchers using scanning probe microscopy. Commercial nanopositioners have achieved direct measurements at the scale of 0.01 nm with capacitive sensing metrology. However, the commercial sensors have small dynamic ranges (up to only a few hundred micrometers) and are relatively large in size (centimeters in the transverse directions to the motion), which is necessary for healthy signal detections but making it difficult to use on smaller devices. This limits applications in which large materials (on the scale of centimeters or greater) are handled with needs of subnanometer resolutions. What has been done in the past is to combine the fine and coarse translation stages with different dynamic ranges to simultaneously achieve long travel range and high spatial resolution. In this paper, we present a novel capacitive position sensing metrology with ultrawide dynamic range from subnanometer to literally any practically desired length for a translation stage. This sensor will greatly simplify the task and enhance the performance of direct metrology in a hybrid translational stage covering translation tasks from subnanometer to centimeters.
Bird population trends are linearly affected by climate change along species thermal ranges
Jiguet, F.; Devictor, V.; Ottvall, R.; Van Turnhout, C.; Van der Jeugd, H.P.; Lindström, Å.
2010-01-01
Beyond the effects of temperature increase on local population trends and on species distribution shifts, how populations of a given species are affected by climate change along a species range is still unclear. We tested whether and how species responses to climate change are related to the
Dynamic Range Enhancement of High-Speed Electrical Signal Data via Non-Linear Compression
Laun, Matthew C. (Inventor)
2016-01-01
Systems and methods for high-speed compression of dynamic electrical signal waveforms to extend the measuring capabilities of conventional measuring devices such as oscilloscopes and high-speed data acquisition systems are discussed. Transfer function components and algorithmic transfer functions can be used to accurately measure signals that are within the frequency bandwidth but beyond the voltage range and voltage resolution capabilities of the measuring device.
Development of a low power miniature linear ion trap mass spectrometer with extended mass range
Li, Gang; Li, Detian; Cheng, Yongjun; Pei, Xiaoqiang; Zhang, Huzhong; Wang, Yongjun; Sun, Jian; Dong, Meng
2017-12-01
A miniaturized ion trap mass spectrometer with continuous atmospheric pressure interface was built, which could be used in conjunction with internal ionization (in-vacuum plasma ionization) and external ionization (electrospray ionization). To improve its mass range, a supplemental AC signal frequency scan mode was performed for this miniature mass spectrometer, in which the fundamental RF signal was remained constant with an amplitude as low as several hundreds volts. Experiments showed that the upper limit of the mass range can be extended to 2500 Da for the miniature mass spectrometer developed in this work, and the power consumption can be reduced by 2/5, while maintaining good balance with performance parameters such as stability, sensitivity, and resolution. Due to the improvement in mass range and significant reduction in energy consumption compared with the instrument using the traditional resonant ejection mode, the scan method developed in this work is helpful to promote the miniature design of mass spectrometers for field analysis and space exploration.
National Research Council Canada - National Science Library
CB Toaldo; M Steindel; MA Sousa; CC Tavares
2001-01-01
The molecular karyotype of nine Trypanosoma rangeli strains was analyzed by contour-clamped homogeneous electric field electrophoresis, followed by the chromosomal localization of -tubulin, cysteine...
Directory of Open Access Journals (Sweden)
CB Toaldo
2001-01-01
Full Text Available The molecular karyotype of nine Trypanosoma rangeli strains was analyzed by contour-clamped homogeneous electric field electrophoresis, followed by the chromosomal localization of ß-tubulin, cysteine proteinase, 70 kDa heat shock protein (hsp 70 and actin genes. The T. rangeli strains were isolated from either insects or mammals from El Salvador, Honduras, Venezuela, Colombia, Panama and southern Brazil. Also, T. cruzi CL-Brener clone was included for comparison. Despite the great similarity observed among strains from Brazil, the molecular karyotype of all T. rangeli strains analyzed revealed extensive chromosome polymorphism. In addition, it was possible to distinguish T. rangeli from T. cruzi by the chromosomal DNA electrophoresis pattern. The localization of ß-tubulin genes revealed differences among T. rangeli strains and confirmed the similarity between the isolates from Brazil. Hybridization assays using probes directed to the cysteine proteinase, hsp 70 and actin genes discriminated T. rangeli from T. cruzi, proving that these genes are useful molecular markers for the differential diagnosis between these two species. Numerical analysis based on the molecular karyotype data revealed a high degree of polymorphism among T. rangeli strains isolated from southern Brazil and strains isolated from Central and the northern South America. The T. cruzi reference strain was not clustered with any T. rangeli strain.
Toaldo, C B; Steindel, M; Sousa, M A; Tavares, C C
2001-01-01
The molecular karyotype of nine Trypanosoma rangeli strains was analyzed by contour-clamped homogeneous electric field electrophoresis, followed by the chromosomal localization of beta-tubulin, cysteine proteinase, 70 kDa heat shock protein (hsp 70) and actin genes. The T. rangeli strains were isolated from either insects or mammals from El Salvador, Honduras, Venezuela, Colombia, Panama and southern Brazil. Also, T. cruzi CL-Brener clone was included for comparison. Despite the great similarity observed among strains from Brazil, the molecular karyotype of all T. rangeli strains analyzed revealed extensive chromosome polymorphism. In addition, it was possible to distinguish T. rangeli from T. cruzi by the chromosomal DNA electrophoresis pattern. The localization of beta-tubulin genes revealed differences among T. rangeli strains and confirmed the similarity between the isolates from Brazil. Hybridization assays using probes directed to the cysteine proteinase, hsp 70 and actin genes discriminated T. rangeli from T. cruzi, proving that these genes are useful molecular markers for the differential diagnosis between these two species. Numerical analysis based on the molecular karyotype data revealed a high degree of polymorphism among T. rangeli strains isolated from southern Brazil and strains isolated from Central and the northern South America. The T. cruzi reference strain was not clustered with any T. rangeli strain.
Meyer, Richard
2015-10-01
The plasmid R1162 (RSF1010) encodes a primase essential for its replication. This primase makes up the C-terminal part of MobA, a multifunctional protein with the relaxase as a separate N-terminal domain. The primase is also translated separately as the protein RepB'. Here, we map two signals for type IV secretion onto the recently solved structure of RepB'. One signal is located internally within RepB' and consists of a long α-helix and an adjacent disordered region rich in arginines. The second signal is made up of the same α-helix and a second, arginine-rich region at the C-terminal end of the protein. Successive arginine-to-alanine substitutions revealed that either signal can be utilized by the type IV secretion complex of the plasmid R751. The internal signal also enables conjugal transfer when linked to the relaxase part of MobA. Both signals are similar to those previously identified for type IV secretion substrates in the Vir system of Agrobacterium tumefaciens. Moreover, the C-terminal arginine-rich segment of RepB' has been shown to be secreted by Vir. However, with R751, the signals require MobB, an R1162-encoded accessory protein active in conjugal transfer. The results of two-hybrid assays revealed that MobB interacts, via its membrane-associated domain, with the R751 plasmid coupling protein TraG. In addition, MobB interacts with a region of MobA just outside the RepB' domain. Therefore, MobB is likely an adaptor that is essential for recognition of the primase-associated signals by the R751 secretion machinery. For most plasmids, type IV secretion is an intrinsic part of the mechanism for conjugal transfer. Protein relaxases, bound to the 5' end of the transferring strand, are mobilized into recipient cells by the type IV pathway. In this work, we identify and characterize two signals for secretion in the primase domain of MobA, the relaxase of the IncQ plasmid R1162 (RSF1010). We also show that the adaptor protein MobB is required for engagement
CB Toaldo; Steindel, M; MA Sousa; CC Tavares
2001-01-01
The molecular karyotype of nine Trypanosoma rangeli strains was analyzed by contour-clamped homogeneous electric field electrophoresis, followed by the chromosomal localization of ß-tubulin, cysteine proteinase, 70 kDa heat shock protein (hsp 70) and actin genes. The T. rangeli strains were isolated from either insects or mammals from El Salvador, Honduras, Venezuela, Colombia, Panama and southern Brazil. Also, T. cruzi CL-Brener clone was included for comparison. Despite the great similarity...
Directory of Open Access Journals (Sweden)
Limei Huang
2017-04-01
Full Text Available The environmental pollution of 2,4,6-tribromophenol (TBP has attracted attention. Based on an urgent need for the better provision of clean water, in situ determination of TBP is of great importance. Here, a facile and effective approach for detecting TBP is developed, based on coupling molecular imprinting technique with electrodeposition of chitosan (CS on the gold electrode. The TBP imprinting CS film was fabricated by using CS as functional material and TBP as template molecule. The experiments show that the morphologies and electrochemical properties of the imprinted film sensor was different from non-imprinted film electrode. The current of the imprinted film was linearly proportional to the TBP concentration, with a wide linear range of 1.0 × 10−7 mol•L−1 to 1.0 × 10−3 mol•L−1. By selecting drop-coating method as a reference for controlled trials with the same functional material, the results illustrated that the electrodeposition enjoyed a widely linear range advantage.
Ateş, Filiz; Hug, François; Bouillard, Killian; Jubeau, Marc; Frappart, Thomas; Couade, Mathieu; Bercoff, Jeremy; Nordez, Antoine
2015-08-01
Muscle shear elastic modulus is linearly related to muscle torque during low-level contractions (muscle force. However, it is not known if this relationship remains valid for higher intensities. The aim of this study was to determine: (i) the relationship between muscle shear elastic modulus and muscle torque over the entire range of isometric contraction and (ii) the influence of the size of the region of interest (ROI) used to average the shear modulus value. Ten healthy males performed two incremental isometric little finger abductions. The joint torque produced by Abductor Digiti Minimi was considered as an index of muscle torque and elastic modulus. A high coefficient of determination (R(2)) (range: 0.86-0.98) indicated that the relationship between elastic modulus and torque can be accurately modeled by a linear regression over the entire range (0% to 100% of MVC). The changes in shear elastic modulus as a function of torque were highly repeatable. Lower R(2) values (0.89±0.13 for 1/16 of ROI) and significantly increased absolute errors were observed when the shear elastic modulus was averaged over smaller ROI, half, 1/4 and 1/16 of the full ROI) than the full ROI (mean size: 1.18±0.24cm(2)). It suggests that the ROI should be as large as possible for accurate measurement of muscle shear modulus. Copyright © 2015 Elsevier Ltd. All rights reserved.
Directory of Open Access Journals (Sweden)
Zhiyuan Gao
2015-11-01
Full Text Available This paper presents a dynamic range (DR enhanced readout technique with a two-step time-to-digital converter (TDC for high speed linear CMOS image sensors. A multi-capacitor and self-regulated capacitive trans-impedance amplifier (CTIA structure is employed to extend the dynamic range. The gain of the CTIA is auto adjusted by switching different capacitors to the integration node asynchronously according to the output voltage. A column-parallel ADC based on a two-step TDC is utilized to improve the conversion rate. The conversion is divided into coarse phase and fine phase. An error calibration scheme is also proposed to correct quantization errors caused by propagation delay skew within −Tclk~+Tclk. A linear CMOS image sensor pixel array is designed in the 0.13 μm CMOS process to verify this DR-enhanced high speed readout technique. The post simulation results indicate that the dynamic range of readout circuit is 99.02 dB and the ADC achieves 60.22 dB SNDR and 9.71 bit ENOB at a conversion rate of 2 MS/s after calibration, with 14.04 dB and 2.4 bit improvement, compared with SNDR and ENOB of that without calibration.
Yin, Fei; Ma, Yue; Zhao, Xing; Lv, Qiang; Liu, Yaqiong; Zhang, Tao; Li, Xiaosong
2017-11-01
In recent years, hand, foot, and mouth disease (HFMD) has been increasingly recognized as a critical challenge to disease control and prevention in China. Previous studies have found that meteorological factors such as mean temperature and relative humidity were associated with HFMD. However, little is known about whether the diurnal temperature range (DTR) has any impact on HFMD. This study aimed to quantify the impact of DTR on childhood HFMD in 18 cities in Sichuan Province. A distributed lag non-linear model was adopted to explore the temporal lagged association of daily temperature with age-, gender- and pathogen-specific HFMD. A total of 290 123 HFMD cases aged 0-14 years were reported in the 18 cities in Sichuan Province. The DTR-HFMD relationships were non-linear in all subgroups. Children aged 6-14 years and male children were more vulnerable to the temperature changes. Large DTR had the higher risk estimates of HFMD incidence in cases of EV71 infection, while small DTR had the higher risk estimates of HFMD incidence in cases of CV-A16 infection. Our study suggested that DTR played an important role in the transmission of HFMD with non-linear and delayed effects.
Directory of Open Access Journals (Sweden)
Hao Zha
2016-01-01
Full Text Available The baseline design of CLIC (Compact Linear Collider uses X-band accelerating structures for its main linacs. In order to maintain beam stability in multibunch operation, long-range transverse wakefields must be suppressed by 2 orders of magnitude between successive bunches, which are separated in time by 0.5 ns. Such strong wakefield suppression is achieved by equipping every accelerating structure cell with four damping waveguides terminated with individual rf loads. A beam-based experiment to directly measure the effectiveness of this long-range transverse wakefield and benchmark simulations was made in the FACET test facility at SLAC using a prototype CLIC accelerating structure. The experiment showed good agreement with the simulations and a strong suppression of the wakefields with an unprecedented minimum resolution of 0.1 V/(pC mm m.
An OTA-C filter for ECG acquisition systems with highly linear range and less passband attenuation
Jihai, Duan; Chuang, Lan; Weilin, Xu; Baolin, Wei
2015-05-01
A fifth order operational transconductance amplifier-C (OTA-C) Butterworth type low-pass filter with highly linear range and less passband attenuation is presented for wearable bio-telemetry monitoring applications in a UWB wireless body area network. The source degeneration structure applied in typical small transconductance circuit is improved to provide a highly linear range for the OTA-C filter. Moreover, to reduce the passband attenuation of the filter, a cascode structure is employed as the output stage of the OTA. The OTA-based circuit is operated in weak inversion due to strict power limitation in the biomedical chip. The filter is fabricated in a SMIC 0.18-μm CMOS process. The measured results for the filter have shown a passband gain of -6.2 dB, while the -3-dB frequency is around 276 Hz. For the 0.8 VPP sinusoidal input at 100 Hz, a total harmonic distortion (THD) of -56.8 dB is obtained. An electrocardiogram signal with noise interference is fed into this chip to validate the function of the designed filter. Project supported by the National Natural Science Foundation of China (Nos. 61161003, 61264001, 61166004) and the Guangxi Natural Science Foundation (No. 2013GXNSFAA019333).
Lion, Alexander; Mittermeier, Christoph; Johlitz, Michael
2017-09-01
A novel approach to represent the glass transition is proposed. It is based on a physically motivated extension of the linear viscoelastic Poynting-Thomson model. In addition to a temperature-dependent damping element and two linear springs, two thermal strain elements are introduced. In order to take the process dependence of the specific heat into account and to model its characteristic behaviour below and above the glass transition, the Helmholtz free energy contains an additional contribution which depends on the temperature history and on the current temperature. The model describes the process-dependent volumetric and caloric behaviour of glass-forming materials, and defines a functional relationship between pressure, volumetric strain, and temperature. If a model for the isochoric part of the material behaviour is already available, for example a model of finite viscoelasticity, the caloric and volumetric behaviour can be represented with the current approach. The proposed model allows computing the isobaric and isochoric heat capacities in closed form. The difference c_p -c_v is process-dependent and tends towards the classical expression in the glassy and equilibrium ranges. Simulations and theoretical studies demonstrate the physical significance of the model.
Ege, Kerem; Boutillon, Xavier; Rébillat, Marc
2013-03-01
The piano soundboard transforms the string vibration into sound and therefore, its vibrations are of primary importance for the sound characteristics of the instrument. An original vibro-acoustical method is presented to isolate the soundboard nonlinearity from that of the exciting device (here: a loudspeaker) and to measure it. The nonlinear part of the soundboard response to an external excitation is quantitatively estimated for the first time, at ≈-40 dB below the linear part at the ff nuance. Given this essentially linear response, a modal identification is performed up to 3 kHz by means of a novel high resolution modal analysis technique [K. Ege, X. Boutillon, B. David, High-resolution modal analysis, Journal of Sound and Vibration 325 (4-5) (2009) 852-869]. Modal dampings (which, so far, were unknown for the piano in this frequency range) are determined in the mid-frequency domain where FFT-based methods fail to evaluate them with an acceptable precision. They turn out to be close to those imposed by wood. A finite-element modelling of the soundboard is also presented. The low-order modal shapes and the comparison between the corresponding experimental and numerical modal frequencies suggest that the boundary conditions can be considered as blocked, except at very low frequencies. The frequency-dependency of the estimated modal densities and the observation of modal shapes reveal two well-separated regimes. Below ≈1 kHz, the soundboard vibrates more or less like a homogeneous plate. Above that limit, the structural waves are confined by ribs, as already noticed by several authors, and localised in restricted areas (one or a few inter-rib spaces), presumably due to a slightly irregular spacing of the ribs across the soundboard.
Synthesis of extended nanoscale optical encoders.
Wickersham, Charles E; Kerr, Daniel H S; Lipman, Everett A
2010-12-15
An optical encoder is a device that uses an interrupted light source-sensor pair to map linear or rotational motion onto a periodic signal. Simple, inexpensive optical encoders are used for precise positioning in machines such as desktop printers, disk drives, and astronomical telescopes. A strand of DNA labeled with a series of Förster resonance energy transfer acceptor dyes can perform the same function at the nanometer scale, producing a periodic fluorescence signal that encodes the movement of a single donor-labeled molecular motor with high spatial and temporal resolution. Previous measurements of this type have employed encoders limited to five acceptor dyes, and hence five signal periods, restricting the range of motion that could be followed. Here we describe two methods for synthesizing double-stranded DNA containing several to hundreds of regularly spaced dyes on one strand. Distinct functional groups incorporated at the encoder ends enable tethering for single-molecule measurements.
Wallich, R; Brenner, C; Kramer, M D; Simon, M M
1995-09-01
Previously we have found that sera from immunocompetent mice infected either naturally by ticks or experimentally with low numbers of Borrelia burgdorferi ZS7 bacteria lack OspA- and OspB-specific antibodies but confer optimal protection on severe combined immunodeficiency mice against challenge with spirochetes (U.E. Schaible, L. Gern, R. Wallich, M. D. Kramer, M. Prester, and M. M. Simon, Immunol. Lett. 36:219-226, 1993). We have now used the latter immune sera to identify new spirochetal structures with relevance for protection from an expression library of the virulent European strain B. burgdorferi ZS7. Here we report the cloning and characterization of a novel lipoprotein, designated pG, the gene for which is located on a 48-kb linear plasmid. Sequence analysis of the pG gene revealed an open reading frame encoding a putative lipoprotein of 196 amino acids with a calculated molecular mass of 22 kDa and a consensus cleavage sequence (Leu-X-Y-Z-Cys) recognized by signal peptidase II. Restriction fragment length polymorphism analyses of pG derived from independent B. burgdorferi isolates from different geographic areas revealed that the gene is species specific, with, however, extensive genotypic heterogeneity. Comparison of the protein sequence of pG with those of other known B. burgdorferi outer surface lipoproteins (OspA to OspF and P27) demonstrated that pG is most related to OspF. Furthermore, the upstream region of pG exhibited extensive sequence homology (> 94%) with the ospEF promoter region. Mouse immune sera to recombinant pG did not recognize a corresponding molecule in lysates of in vitro-propagated ZS7 spirochetes. However, experimental or natural infection of mice with ZS7 resulted in the induction of antibodies with reactivity for pG and the potential to delay the development of clinical arthritis. Together with the finding that sera from Lyme disease patients also contain antibodies to pG, our data suggest that the pG gene is preferentially
Satzer, Peter; Jungbauer, Alois
2018-01-13
The high-throughput analysis of antibodies from processes can be enhanced when the linear range is expanded and sample preparation is kept to a minimum. We developed a fast chromatography method based on a hexameric variant of staphylococcal protein A immobilized on Toyopearl matrix, TSK 5 PW using two wavelengths. A protocol with 5 min runtime and a single-wavelength detection at 280 nm yielded an upper limit of quantification of 2.10 mg/mL and a lower limit of quantification of 0.06 mg/mL. The optimized method with a runtime of 2 min and two-wavelength detection at 280 and 300 nm allowed us to span a valid concentration range of 0.01-5.20 mg/mL using two calibration curves. Sample selectivity was tested using mock supernatant mixed with antibody concentrations of 0.1-2.1 mg/mL, sample stability in the autosampler was shown for at least 24 h. We also tested the capabilities of the method to determine purity of an antibody sample by calculating the ratio of peak area of elution to peak area of flow-through, which correlated well with the expected purity. The method will be very useful for process development and in-process control, spanning concentrations from seed fermentation to harvest and purification. © 2018 The Authors. Journal of Separation Science Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Yuan, Long; Zhang, Duxi; Jemal, Mohammed; Aubry, Anne-Francoise
2012-06-30
The linear range of a liquid chromatography/tandem mass spectrometry (LC/MS/MS) bioanalytical assay is typically about three orders of magnitude. A broader standard curve range is favored since it can significantly reduce the time, labor and potential errors related to sample dilution - one of the bottlenecks in sample analysis. Using quadratic regression to fit the standard curve can, to a certain degree, extend the dynamic range. However, the use of a quadratic regression is controversial, particularly in regulated bioanalysis. A number of compounds, with different physicochemical properties and ionization efficiencies, were evaluated to understand the cause of the non-linear behavior of the standard curve. The standard curve behavior is primarily associated with the absolute analyte response but not the analyte concentration, the properties of the analyte, or the nature of the matrix when a stable-isotope-labeled internal standard (SIL-IS) is used. For all the test compounds, a non-linear curve was observed when signals exceeded a certain response, which depends on the detector used in the mass spectrometer. With typical API4000 instruments used for the experiments, this critical response level was determined to be ~1 E+6 counts per second (cps) and it was successfully used to predict the linear ranges for the test compounds. By simultaneously monitoring two selective reaction monitoring (SRM) channels of different intensity and using SIL-IS, a linear range of five orders of magnitude was achieved. In this work, the root cause of the non-linear behavior of the standard curve when using a SIL-IS was investigated and identified. Based on the findings, an improved multiple SRM channels approach was proposed and successfully applied to obtain a linear dynamic range of five orders of magnitude for one test compound. This approach may work particularly well for LC/MS/MS bioanalytical assay of dried blood spot (DBS) samples, for which a direct dilution is cumbersome
Zafar, Haroon; Breathnach, Aedán; Subhash, Hrebesh M; Leahy, Martin J
2015-05-01
Photoacoustic imaging (PAI) with a linear-array-based probe can provide a convenient means of imaging the human microcirculation within its native structural context and adds functional information. PAI using a multielement linear transducer array combined with multichannel collecting system was used for in vivo volumetric imaging of the blood microcirculation, the total concentration of hemoglobin (HbT), and the hemoglobin oxygen saturation (sO₂) within human tissue. Three-dimensional (3-D) PA and ultrasound (US) volumetric scans were acquired from the forearm skin by linearly translating the transducer with a stepper motor over a region of interest, while capturing two-dimensional images using 15, 21, and 40 MHz frequency transducer probes. For the microvasculature imaging, PA images were acquired at 800- and 1064-nm wavelengths. For the HbT and sO₂ estimates, PA images were collected at 750- and 850-nm wavelengths. 3-D microcirculation, HbT, and sO₂ maps of the forearm skin were obtained from normal subjects. The linear-array-based PAI has been found promising in terms of resolution, imaging depth, and imaging speed for in vivo microcirculation imaging within human skin. We believe that a reflection type probe, similar to existing clinical US probes, is most likely to succeed in real clinical applications. Its advantages include ease of use, speed, and familiarity for radiographers and clinicians.
Energy Technology Data Exchange (ETDEWEB)
Rosa Silva, Joao Batista [Department of Teleinformatic Engineering, Federal University of Ceara, Campus do Pici, 710, C.P. 6007, 60755-640 Fortaleza-Ceara (Brazil)]. E-mail: joaobrs@deti.ufc.br; Ramos, Rubens Viana [Department of Teleinformatic Engineering, Federal University of Ceara, Campus do Pici, 710, C.P. 6007, 60755-640 Fortaleza-Ceara (Brazil)]. E-mail: rubens@deti.ufc.br
2006-12-11
Aiming the construction of quantum computers and quantum communication systems based on optical devices, in this work we present possible implementations of quantum and classical CNOTs gates, as well an optical setup for generation and distribution of bipartite entangled states, using linear optical devices and photon number quantum non-demolition measurement.
Lee, Sheng-Chiang; Peters, Randall
2010-03-01
Commercial nano-positioners have achieved direct position measurements at the scale of 0.01 nm with capacitive sensing metrology. However, the commercial sensors have small dynamic ranges (up to only a few hundred μm) and are relatively large in size (centimeters in the transverse directions), which is necessary for healthy signal detections but making it difficult to use on smaller devices. The small dynamic range also limits its applications in which large materials (on the scale of centimeters or greater) are handled with needs of sub-nm resolutions. What has been done in the past is to combine the fine and coarse position sensors with different dynamic ranges to cover the required dynamic range. In this paper, we present a novel capacitive position sensing metrology with ultra-wide dynamic range from sub-nm to literally any practically desired length for a translation stage. This sensor will greatly simplify the task and enhance the performance of direct metrology in a hybrid translational stage covering translation tasks from sub-nm to centimeters.
Drabek, Jiri; Zatloukal, Martin; Martyn, Mike
2017-05-01
In this work, three different linear polypropylenes, with melt flow rate between 450-1200 g.10min-1, have been characterized by using rotational and twin bore capillary rheometer equipped by novel inert orifice die design as well as by the instrumented injection molding machine. The measured data, that shows first as well as second Newtonian plateau, were consequently fitted by four conventional models (Cross, Carreau, Generalized Quemada and Carreau-Yasuda models) as well as by two novel viscosity models (modified Quemada and Carreau models) suggested here for the first time. It has been found that modified 5-parametric Carreau model has the highest capability to describe the measured shear viscosity data for given polymer melts.
Galvez-Romero, Guillermo; Salas-Rojas, Mónica; Pompa-Mera, Ericka N; Chávez-Rueda, Karina; Aguilar-Setién, Álvaro
2017-11-27
Rabies DNA vaccines based on full-length glycoprotein (G) induce virus neutralizing antibody (VNA) responses and protect against the virus challenge. Although conformational epitopes of G are the main target of VNAs, some studies have shown that a polypeptide linear epitope G5 is also able to induce VNAs. However, a G5 DNA vaccine has not been explored. While multiple doses of DNA vaccines are required in order to confer a protective immune response, this could be overcome by the inclusion of C3d-P28, a molecular adjuvant is know to improve the antibody response in several anti-viral vaccine models. To induce and enhance the immune response against rabies in mice, we evaluated two DNA vaccines based on the linear epitope G5 of Rabies Virus (RABV) glycoprotein (pVaxG5 vaccine) and another vaccine consisting of G5 fused to the molecular adjuvant C3d-P28 (pVaxF1 vaccine). VNA responses were measured in mice immunized with both vaccines. The VNA levels from the group immunized with pVaxG5 decreased gradually, while those from the group vaccinated with pVaxF1 remained high throughout the experimental study. After challenge with 22 LD50 of the Challenge Virus Strain (CVS), the survival rate of mice immunized with pVaxG5 and pVaxF1 was increased by 27% and 50% respectively, in comparison to the PBS group. Furthermore, the in vitro proliferation of anti-rabies specific spleen CD4+ and CD8+ T cells from mice immunized with pVaxF1 was observed. Collectively, these results suggest that the linear G5 epitope is a potential candidate vaccine. Furthermore, the addition of a C3d-P28 adjuvant contributed to enhanced protection, the sustained production of VNAs, and a specific T-cell proliferative response. Copyright © 2017 Elsevier Ltd. All rights reserved.
Shao, Zhiyong; Graf, Shannon; Chaga, Oleg Y; Lavrov, Dennis V
2006-10-15
The 16,937-nuceotide sequence of the linear mitochondrial DNA (mt-DNA) molecule of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa) - the first mtDNA sequence from the class Scypozoa and the first sequence of a linear mtDNA from Metazoa - has been determined. This sequence contains genes for 13 energy pathway proteins, small and large subunit rRNAs, and methionine and tryptophan tRNAs. In addition, two open reading frames of 324 and 969 base pairs in length have been found. The deduced amino-acid sequence of one of them, ORF969, displays extensive sequence similarity with the polymerase [but not the exonuclease] domain of family B DNA polymerases, and this ORF has been tentatively identified as dnab. This is the first report of dnab in animal mtDNA. The genes in A. aurita mtDNA are arranged in two clusters with opposite transcriptional polarities; transcription proceeding toward the ends of the molecule. The determined sequences at the ends of the molecule are nearly identical but inverted and lack any obvious potential secondary structures or telomere-like repeat elements. The acquisition of mitochondrial genomic data for the second class of Cnidaria allows us to reconstruct characteristic features of mitochondrial evolution in this animal phylum.
Directory of Open Access Journals (Sweden)
B.C. Mahato
2011-09-01
Full Text Available This paper presents a method based on iterative fast fourier technique for placing nulls in prescribed directions by amplitude-only control method in the radiation pattern of scanned linear array of uniformly spaced isotropic antennas with fixed dynamic range ratio of amplitude distribution and minimum peak side lobe level. Two examples have been presented, one with 20 isotropic antennas for placing two nulls and another with 22 isotropic antennas for placing wide null. Dynamic range ratio in both the cases has been fixed at 4.0.The method uses the property that for a linear array with uniform element spacing, an inverse Fourier transform relationship exists between the array factor and the element excitations.
DEFF Research Database (Denmark)
Rahul, Arun; Pramanick, Sumit; Kaarthik, R. Sudharshan
2017-01-01
In this paper, a new space vector pulse width modulation method to extend the linear modulation range of a cascaded five level inverter topology with a single dc supply is presented. Using this method, the inverter can be controlled linearly and the peak phase fundamental output voltage...... of the inverter can be increased from 0.577 to 0.637Vdc without increasing the dc bus voltage and without exceeding the induction motor voltage rating. This new technique makes use of cascaded inverter pole voltage redundancy and property of the space vector structure for its operation. Using this, the induction...... motor drive can be operated till the full speed range (0-50 Hz) with the elimination of lower order harmonics in the phase voltage and phase current. The five-level topology presented in this paper is realized by cascading a two-level inverter and two full bridge modules with floating capacitors...
Lengen, M.; Bill, E.; Butzlaff, C.; Trautwein, A. X.; Winter, M.; Chaudhuri, P.
1994-12-01
The magnetic properties of [L-Fe(III)-dmg3Mn(II)-Fe(III)-L] (ClO4)2 have been characterized by magnetic susceptibility, EPR, and Mössbauer studies. L represents 1,4,7-trimethyl-, 1,4,7-triazacyclononane and dmg represents dimethylglyoxime. X-ray diffraction measurements yield that the arrangement of the three metal centers is strictly linear with atomic distances d Fe-Mn=0.35 nm and d Fe-Fe=0.7 nm. Magnetic susceptibility measurements (3 295 K) were analyzed in the framework of the spin-Hamiltonian formalism considering Heisenberg exchange and Zeeman interaction: Ĥ= J Fe-Mn( S Fe1+ S Fe2) S Mn + J Fe-Fe( S Fe1 S Fe2) +gΜB S total B. The spins S Fe1= S Fe2 = S Mn=5/2 of the complex are antiferromagnetically coupled, yielding a total spin of S total=5/2 with exchange coupling constants F Fe-Mn=13.4 cm-1 and J Fe-Fe= 4.5 cm-1. Magnetically split Mössbauer spectra were recorded at 1.5 K under various applied fields (20 m T, 170 mT, 4T). The spin-Hamiltonian analysis of these spectra yields isotropic magnetic hyperfine coupling with A total/( g N Μ N)=-18.5 T. The corresponding local component A Fe is related to A total via spin-projection: A total=(6/7)AFe. The resulting A Fe/( g NΜN)=-21.6 T is in agreement with standard values of ferric high-spin complexes. Spin-Hamiltonian parameters as obtained from Mössbauer studies and exchange coupling constants as derived from susceptibility measurements are corroborated by temperature-dependent EPR studies.
Some remarks on the time of flight and range of a projectile in a linear resisting medium
Directory of Open Access Journals (Sweden)
S. M. Stewart
2011-01-01
Full Text Available In view of the recent work by Karkantzakos [Journal of Engineering Science and Technology Review 2 (2009 76–81], anumber of remarks highlighting the connection between the Lambert W function and the time of flight and range of a projectilemoving in a resisting medium where the retarding force acting on the projectile is proportional to its velocity are made.In particular, we show how each of these quantities can be expressed in closed form in terms of the Lambert W function andindicate how the analysis of the motion becomes greatly simplified by its introduction.
Odenthal, J. P.
1980-01-01
An opto-electronic receiver incorporating a multi-element linear photodiode array as a component of a laser-triangulation rangefinder was developed as an obstacle avoidance sensor for a Martian roving vehicle. The detector can resolve the angle of laser return in 1.5 deg increments within a field of view of 30 deg and a range of five meters. A second receiver with a 1024 elements over 60 deg and a 3 meter range is also documented. Design criteria, circuit operation, schematics, experimental results and calibration procedures are discussed.
Energy Technology Data Exchange (ETDEWEB)
Lengen, M. [Medizinische Univ. Luebeck (Germany). Inst. fuer Physik; Bill, E. [Medizinische Univ. Luebeck (Germany). Inst. fuer Physik; Butzlaff, C. [Medizinische Univ. Luebeck (Germany). Inst. fuer Physik; Trautwein, A.X. [Medizinische Univ. Luebeck (Germany). Inst. fuer Physik; Winter, M. [Anorganische Chemie 1, Ruhr-Univ., Bochum (Germany); Chaudhuri, P. [Anorganische Chemie 1, Ruhr-Univ., Bochum (Germany)
1994-11-01
The magnetic properties of [L-Fe(III)-dmg{sub 3}Mn(II)-Fe(III)-L] (ClO{sub 4}){sub 2} have been characterized by magnetic susceptibility, EPR, and Moessbauer studies. L represents 1,4,7-trimethyl-,1,4,7-triazacyclononane and dmg represents dimethylglyoxime. X-ray diffraction measurements yield that the arrangement of the three metal centers is strictly linear with atomic distances d{sub Fe-Mn} = 0.35 nm and d{sub Fe-Fe} = 0.7 nm. Magnetic susceptibility measurements (3-295 K) were analyzed in the framework of the spin-Hamiltonian formalism considering Heisenberg exchange and Zeeman interaction: H = J{sub Fe-Mn} (S{sub Fe1} + S{sub Fe2})S{sub Mn} + J{sub Fe-Fe}S{sub Fe1}S{sub Fe2} + g{mu}{sub B}S{sub total}B. The spins S{sub Fe1} = S{sub Fe2} = S{sub Mn} = 5/2 of the complex are antiferromagnetically coupled, yielding a total spin of S{sub total} = 5/2 with exchange coupling constants F{sub Fe-Mn} = 13.4 cm{sup -1} and J{sub Fe-Fe} = 4.5 cm{sup -1}. Magnetically split Moessbauer spectra were recorded at 1.5 K under various applied fields (20 mT, 170 mT, 4 T). The spin-Hamiltonian analysis of these spectra yields isotropic magnetic hyperfine coupling with A{sub total}/(g{sub N}{mu}{sub N}) = -18.5 T. The corresponding local component A{sub Fe} is related to A{sub total} via spin-projection: A{sub total} = (6/7)A{sub Fe}. The resulting A{sub Fe}/(g{sub N}{mu}{sub N}) = -21.6 T is in agreement with standard values of ferric high-spin complexes. Spin-Hamiltonian parameters as obtained from Moessbauer studies and exchange coupling constants as derived from susceptibility measurements are corroborated by temperature-dependent EPR studies. (orig.)
Chutipongtanate, Somchai; Watcharatanyatip, Kamolwan; Homvises, Teerada; Jaturongkakul, Kewalee; Thongboonkerd, Visith
2012-08-30
There is limited and inconclusive information regarding detectable limits and linear dynamic ranges of various quantitative protein assays. We thus performed systematic comparisons of seven commonly used methods, including direct spectrophotometric quantitation at λ205 and λ280 nm (A205 and A280, respectively), bicinchoninic acid (BCA), Biuret, Bradford, Lowry and Ninhydrin methods. Purified BSA, porcine kidney extract, tryptic digested peptides derived from purified BSA, and glycine, were used as representative purified protein, complex protein mixture, peptide and amino acid, respectively. Bradford method was the most sensitive assay (LOD=0.006 mg/ml) and had the widest range of detectability (LOD-UOD=0.006-100mg/ml) for purified protein and complex protein mixture. For peptide, A205, A280, Lowry and Ninhydrin methods had a comparable LOD (0.006 mg/ml), but Ninhydrin method had the widest detectability range (LOD-UOD=0.006-100mg/ml). For amino acid, A205 and Ninhydrin methods had a comparable LOD (0.006 mg/ml), but A205 had a wider detectability range (LOD-UOD=0.006-6.250 mg/ml). Biuret method offered the widest linear dynamic range for purified protein and complex protein mixture (0.391-100mg/ml), A280 offered the widest linear dynamic range for peptide (0.024-6.250 mg/ml), and Ninhydrin method offered the widest linear dynamic range for amino acid (0.024-0.195 mg/ml). Both Laemmli's and 2-D lysis buffers had dramatic interfering effects on all assays. Concerning the practicality and unit costs, A205 and A280 were the most favorable. Among the colorimetric methods, Bradford method consumed the least amount of samples and shortest analytical time with the lowest unit cost. These are the most extensive comparative data of commonly used quantitative protein assays that will be useful for selecting the most suitable method for each study. Copyright © 2012 Elsevier B.V. All rights reserved.
Detecting Faults from Encoded Information
Persis, Claudio De
2003-01-01
The problem of fault detection for linear continuous-time systems via encoded information is considered. The encoded information is received at a remote location by the monitoring deiice and assessed to infer the occurrence of the fault. A class of faults is considered which allows to use a simple
Humes, L E; Christensen, L; Thomas, T; Bess, F H; Hedley-Williams, A; Bentler, R
1999-02-01
The aided performance and benefit achieved with linear and two-channel wide dynamic range compression (WDRC) in-the-canal (ITC) hearing aids were established in 55 individuals. Study participants had been wearing either linear or adaptive-frequency-response (Bass Increase at Low Levels, BILL) ITC hearing aids for approximately one year before participation in this study. Outcome measures included aided performance and objective benefit in quiet and noise at a variety of speech levels (50, 60, and 75 dB SPL), at various levels of babble background (quiet, signal-to-babble ratios of +5 and +10 dB), and for various types of test materials (monosyllabic words and sentences in connected speech). Several subjective measures of aided performance (sound-quality judgments and magnitude estimates of listening effort) and relative benefit (improvement in listening effort and the Hearing Aid Performance Inventory, HAPI) were also obtained. Finally, self-report measures of hearing-aid use were also obtained using daily logs. Participants completed all outcome measures for the linear ITC hearing aids first, following 2 months of usage, and then repeated all outcome measures for the WDRC instruments after a subsequent 2-month period of use. In general, although both types of hearing aids demonstrated significant benefit, the results indicated that the WDRC instruments were superior to the linear devices for many of the outcome measures. This tended to be the case most frequently when low speech levels were used. Many of the performance differences between devices most likely can be ascribed to differences in gain, and prescriptive approaches (DSL[i/o] vs. NAL-R), for the fixed volume control testing performed in this study.
Linear encoder based low frequency inertial sensor
Collette Christophe; Lambert Pierre; Hellegouarch Sylvain; Roza Lionel Fueyo; Artoos Kurt
2015-01-01
For many applications, there is an increasing demand for low cost, high-resolution inertial sensors, which are capable of operating in harsh environments. Recently, a prototype of small optical inertial sensor has been built, using a Michelson interferometer. A resolution of 3 pm/√Hz has been obtained above 4 Hz using only low cost components. Compared to most state-of-the-art devices, this prototype did not contain any coil, which offers several important advantages, including a low thermal ...
Humes, Larry E; Humes, Lauren E; Wilson, Dana L
2004-06-01
The present study used an independent-group design to compare the benefits provided by binaural, single-channel, linear, full-shell in-the-ear hearing aids and binaural, 2-channel, wide-dynamic-range-compression in-the-canal hearing aids in groups of older hearing aid wearers. Hearing aid outcome measures were obtained at both 1-month (n = 53) and 6-month (n = 34) postfit intervals with each device. Outcome measures included multiple measures of speech-recognition performance and self-report measures of hearing aid benefit, satisfaction, and usage. Aided sound-quality measurements were also obtained. Although both devices provided significant benefits to the wearers, there were no significant differences in the benefits provided by either device at the 1-month or 6-month postfit intervals.
Li, Zhenzhen
2015-06-12
One-dimensional nanocomposites of metal-oxide and noble metal were expected to present superior performance for nonenzymatic glucose detection due to its good conductivity and high catalytic activity inherited from noble metal and metal oxide respectively. As a proof of concept, we synthesized gold and copper oxide (Au/CuO) composite with unique one-dimensional nanocauliflowers structure. Due to the nature of the synthesis method, no any foreign binder was needed in keeping either Au or CuO in place. To the best of our knowledge, this is the first attempt in combining metal oxide and noble metal in a binder-free style for fabricating nonenzymatic glucose sensor. The Au/CuO nanocauliflowers with large electrochemical active surface and high electrolyte contact area would promise a wide linear range and high sensitive detection of glucose with good stability and reproducibility due to its good electrical conductivity of Au and high electrocatalytic activity of CuO.
Energy Technology Data Exchange (ETDEWEB)
Xu, Fan; Wang, Yuanqing, E-mail: yqwang@nju.edu.cn; Li, Fenfang [School of Electronic Science and Engineering, Nanjing University, Nanjing 210046 (China)
2016-03-15
The avalanche-photodiode-array (APD-array) laser detection and ranging (LADAR) system has been continually developed owing to its superiority of nonscanning, large field of view, high sensitivity, and high precision. However, how to achieve higher-efficient detection and better integration of the LADAR system for real-time three-dimensional (3D) imaging continues to be a problem. In this study, a novel LADAR system using four linear mode APDs (LmAPDs) is developed for high-efficient detection by adopting a modulation and multiplexing technique. Furthermore, an automatic control system for the array LADAR system is proposed and designed by applying the virtual instrumentation technique. The control system aims to achieve four functions: synchronization of laser emission and rotating platform, multi-channel synchronous data acquisition, real-time Ethernet upper monitoring, and real-time signal processing and 3D visualization. The structure and principle of the complete system are described in the paper. The experimental results demonstrate that the LADAR system is capable of achieving real-time 3D imaging on an omnidirectional rotating platform under the control of the virtual instrumentation system. The automatic imaging LADAR system utilized only 4 LmAPDs to achieve 256-pixel-per-frame detection with by employing 64-bit demodulator. Moreover, the lateral resolution is ∼15 cm and range accuracy is ∼4 cm root-mean-square error at a distance of ∼40 m.
Shcherbakov, Alexandre S.; Luna Castellanos, Abraham; Tepichin Rodriguez, Eduardo; Balderas Mata, Sandra E.
2008-02-01
We develop our previous considerations for one of the most important problems related to optimizing the performance data of a new acousto-optical spectrometer for the analysis of radio-astronomical signals. The main attention is paid to estimating the side lobes of light distributions inherent in an individual resolvable spot in the output Fourier plane, governing the dynamic range of that spectrometer. At first, we analyze the Akhieser mechanism responsible for linear attenuation of both longitudinal and shear elastic waves in isotropic solid states. Similar analysis can be directly applied to crystalline materials as well in all the cases of passing elastic wave along the acoustic axis in crystals. Then, we estimate the influence of the acoustic attenuation along a large-aperture acousto-optical cells operating in a one- and two-phonon light scattering regimes. In so doing, the optimal operating points are discussed for both these regimes. Finally, the combined effect of the acoustic attenuation and the incident light beam apodization is studied from the points of view of optimizing the levels of side lobes and minima in light distribution of an individual resolvable spot in focal plane of the integrating lens and, consequently, estimating potential limitations of the dynamic range.
Liu, Hua; Xie, Xin; Tan, Ruoyu; Zhang, Lianchao; Fan, Dapeng
2017-06-01
Most of the XY positioning stages proposed in previous studies are mainly designed by considering only a single performance indicator of the stage. As a result, the other performance indicators are relatively weak. In this study, a 2-degree-of-freedom linear compliant positioning stage (LCPS) is developed by mechatronic design to balance the interacting performance indicators and realize the desired positioning stage. The key parameters and the coupling of the structure and actuators are completely considered in the design. The LCPS consists of four voice coil motors (VCMs), which are conformally designed for compactness, and six spatial leaf spring parallelograms. These parallelograms are serially connected for a large travel range and a high out-of-plane payload capacity. The mechatronic model is established by matrix structural analysis for structural modeling and by Kirchhoff's law for the VCMs. The sensitivities of the key parameters are analyzed, and the design parameters are subsequently determined. The analytical model of the stage is confirmed by experiments. The stage has a travel range of 4.4 mm × 7.0 mm and a 0.16% area ratio of workspace to the outer dimension of the stage. The values of these performance indicators are greater than those of any existing stage reported in the literature. The closed-loop bandwidth is 9.5 Hz in both working directions. The stage can track a circular trajectory with a radius of 1.5 mm, with 40 mm error and a resolution of lower than 3 mm. The results of payload tests indicate that the stage has at least 20 kg outof- plane payload capacity.
Zhou, Jian; Li, Xi; Yang, Linlin; Yan, Songlin; Wang, Mengmeng; Cheng, Dan; Chen, Qi; Dong, Yulin; Liu, Peng; Cai, Weiquan; Zhang, Chaocan
2015-10-29
A novel electrochemical sensor based on Cu-MOF-199 [Cu-MOF-199 = Cu3(BTC)2 (BTC = 1,3,5-benzenetricarboxylicacid)] and SWCNTs (single-walled carbon nanotubes) was fabricated for the simultaneous determination of hydroquinone (HQ) and catechol (CT). The modification procedure was carried out through casting SWCNTs on the bare glassy carbon electrode (GCE) and followed by the electrodeposition of Cu-MOF-199 on the SWCNTs modified electrode. Cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS) and scanning electron microscopy (SEM) were performed to characterize the electrochemical performance and surface characteristics of the as-prepared sensor. The composite electrode exhibited an excellent electrocatalytic activity with increased electrochemical signals towards the oxidation of HQ and CT, owing to the synergistic effect of SWCNTs and Cu-MOF-199. Under the optimized condition, the linear response range were from 0.1 to 1453 μmol L(-1) (RHQ = 0.9999) for HQ and 0.1-1150 μmol L(-1) (RCT = 0.9990) for CT. The detection limits for HQ and CT were as low as 0.08 and 0.1 μmol L(-1), respectively. Moreover, the modified electrode presented the good reproducibility and the excellent anti-interference performance. The analytical performance of the developed sensor for the simultaneous detection of HQ and CT had been evaluated in practical samples with satisfying results. Copyright © 2015 Elsevier B.V. All rights reserved.
Energy Technology Data Exchange (ETDEWEB)
Sandhu, P; Vogel, J S; Rose, M J; Ubick, E A; Brunner, J E; Wallace, M A; Adelsberger, J K; Baker, M P; Henderson, P T; Pearson, P G; Baillie, T A
2004-04-22
The technique of accelerator mass spectrometry (AMS) was validated successfully and utilized to study the pharmacokinetics and disposition in dogs of a preclinical drug candidate (Compound A), after oral and intravenous administration. The primary objective of this study was to examine whether Compound A displayed linear kinetics across sub-pharmacological (microdose) and pharmacological dose ranges in an animal model, prior to initiation of a human microdose study. The AMS-derived disposition properties of Compound A were comparable to data obtained via conventional techniques such as LC-MS/MS and liquid scintillation counting analyses. Thus, Compound A displayed multiphasic kinetics and possessed low plasma clearance (4.4 mL/min/kg), a long terminal elimination half-life (19.4 hr) and high oral bioavailability (82%). Currently there are no published comparisons of the kinetics of a pharmaceutical compound at pharmacological versus sub-pharmacological doses employing microdosing strategies. The present study thus provides the first description of the pharmacokinetics of a drug candidate assessed under these two dosing regimens. The data demonstrated that the pharmacokinetic properties of Compound A were similar following dosing at 0.02 mg/kg as at 1 mg/kg, indicating that in the case of Compound A, the kinetics of absorption, distribution and elimination in the dog appear to be linear across this 50-fold dose range. Moreover, the exceptional sensitivity of AMS provided a pharmacokinetic profile of Compound A, even following a microdose, which revealed aspects of the disposition of this agent that were inaccessible by conventional techniques. The applications of accelerator mass spectrometry (AMS) are broad ranging and vary from studying environmental and ecological issues such as the isotopic composition of the atmosphere, soil and water (Hughen et al., 2000; Beck et al., 2001; Keith-Roach et al., 2001; Mironov et al., 2002), to archaeology and volcanology
Multidimensionally encoded magnetic resonance imaging.
Lin, Fa-Hsuan
2013-07-01
Magnetic resonance imaging (MRI) typically achieves spatial encoding by measuring the projection of a q-dimensional object over q-dimensional spatial bases created by linear spatial encoding magnetic fields (SEMs). Recently, imaging strategies using nonlinear SEMs have demonstrated potential advantages for reconstructing images with higher spatiotemporal resolution and reducing peripheral nerve stimulation. In practice, nonlinear SEMs and linear SEMs can be used jointly to further improve the image reconstruction performance. Here, we propose the multidimensionally encoded (MDE) MRI to map a q-dimensional object onto a p-dimensional encoding space where p > q. MDE MRI is a theoretical framework linking imaging strategies using linear and nonlinear SEMs. Using a system of eight surface SEM coils with an eight-channel radiofrequency coil array, we demonstrate the five-dimensional MDE MRI for a two-dimensional object as a further generalization of PatLoc imaging and O-space imaging. We also present a method of optimizing spatial bases in MDE MRI. Results show that MDE MRI with a higher dimensional encoding space can reconstruct images more efficiently and with a smaller reconstruction error when the k-space sampling distribution and the number of samples are controlled. Copyright © 2012 Wiley Periodicals, Inc.
Tuey, R. C.
1972-01-01
Computer solutions of linear programming problems are outlined. Information covers vector spaces, convex sets, and matrix algebra elements for solving simultaneous linear equations. Dual problems, reduced cost analysis, ranges, and error analysis are illustrated.
Callier, F. M.; Desoer, C. A.
1974-01-01
The loop transformation technique (Sandberg, 1965; Zames, 1966, Willems, 1971), and the fixed point theorem (Schwartz, 1970) are used to derive the L(superscript-p) stability for a class of multivariable nonlinear time-varying feedback systems which are open-loop unstable. The application of the fixed point theorem in L(superscript-p) shows that the nonlinear feedback system has one and only one solution for any pair of inputs in L(superscript-p), that the solutions are continuously dependent on the inputs, and that the closed loop system is L(superscript-p)-stable for any p ranging from 1 to infinity.
Ishii, Hideaki; Shimada, Miki; Yamaguchi, Hiroaki; Mano, Nariyasu
2016-11-01
We applied a new technique for quantitative linear range shift using in-source collision-induced dissociation (CID) to complex biological fluids to demonstrate its utility. The technique was used in a simultaneous quantitative determination method of 5-fluorouracil (5-FU), an anticancer drug for various solid tumors, and its metabolites in human plasma by liquid chromatography-electrospray ionization-tandem mass spectrometry (LC/ESI-MS/MS). To control adverse effects after administration of 5-FU, it is important to monitor the plasma concentration of 5-FU and its metabolites; however, no simultaneous determination method has yet been reported because of vastly different physical and chemical properties of compounds. We developed a new analytical method for simultaneously determining 5-FU and its metabolites in human plasma by LC/ESI-MS/MS coupled with the technique for quantitative linear range shift using in-source CID. Hydrophilic interaction liquid chromatography using a stationary phase with zwitterionic functional groups, phosphorylcholine, was suitable for separation of 5-FU from its nucleoside and interfering endogenous materials. The addition of glycerin into acetonitrile-rich eluent after LC separation improved the ESI-MS response of high polar analytes. Based on the validation results, linear range shifts by in-source CID is the reliable technique even with complex biological samples such as plasma. Copyright © 2016 John Wiley & Sons Ltd. Copyright © 2016 John Wiley & Sons, Ltd.
An investigation into the development of an alternative optical shaft encoder
2012-01-01
M.Ing. Shaft encoders, are devices generally used in speed and position control applications for sensing position of rotational and linearly moving objects. Most conventional shaft encoders operate on the principle of reading encoded information off a disk, which is fitted to the shaft or using resolver units. Problems are often experienced in fitting high-resolution encoder disks or resolvers to small motors or moving objects. The resolution of an encoder system, using an encoded disk, is...
Non-linear dendrites can tune neurons
Directory of Open Access Journals (Sweden)
Romain Daniel Cazé
2014-03-01
Full Text Available A signature of visual, auditory, and motor cortices is the presence of neurons tuned to distinct features of the environment. While neuronal tuning can be observed in most brain areas, its origin remains enigmatic, and new calcium imaging data complicate this problem. Dendritic calcium signals, in a L2/3 neuron from the mouse visual cortex, display a wide range of tunings that could be different from the neuronal tuning (Jia et al 2010. To elucidate this observation we use multi-compartmental models of increasing complexity, from a binary to a realistic biophysical model of L2/3 neuron. These models possess non-linear dendritic subunits inside which the result of multiple excitatory inputs is smaller than their arithmetic sum. While dendritic non-linear subunits are ad-hoc in the binary model, non-linearities in the realistic model come from the passive saturation of synaptic currents. Because of these non-linearities our neuron models are scatter sensitive: the somatic membrane voltage is higher when presynaptic inputs target different dendrites than when they target a single dendrite. This spatial bias in synaptic integration is, in our models, the origin of neuronal tuning. Indeed, assemblies of presynaptic inputs encode the stimulus property through an increase in correlation or activity, and only the assembly that encodes the preferred stimulus targets different dendrites. Assemblies coding for the non-preferred stimuli target single dendrites, explaining the wide range of observed tunings and the possible difference between dendritic and somatic tuning. We thus propose, in accordance with the latest experimental observations, that non-linear integration in dendrites can generate neuronal tuning independently of the coding regime.
Space-time encoding for high frame rate ultrasound imaging.
Misaridis, Thanassis X; Jensen, Jørgen A
2002-05-01
Frame rate in ultrasound imaging can be dramatically increased by using sparse synthetic transmit aperture (STA) beamforming techniques. The two main drawbacks of the method are the low signal-to-noise ratio (SNR) and the motion artifacts, that degrade the image quality. In this paper we propose a spatio-temporal encoding for STA imaging based on simultaneous transmission of two quasi-orthogonal tapered linear FM signals. The excitation signals are an up- and a down-chirp with frequency division and a cross-talk of -55 dB. The received signals are first cross-correlated with the appropriate code, then spatially decoded and finally beamformed for each code, yielding two images per emission. The spatial encoding is a Hadamard encoding previously suggested by Chiao et al. [in: Proceedings of the IEEE Ultrasonics Symposium, 1997, p. 1679]. The Hadamard matrix has half the size of the transmit element groups, due to the orthogonality of the temporal encoded wavefronts. Thus, with this method, the frame rate is doubled compared to previous systems. Another advantage is the utilization of temporal codes which are more robust to attenuation. With the proposed technique it is possible to obtain images dynamically focused in both transmit and receive with only two firings. This reduces the problem of motion artifacts. The method has been tested with extensive simulations using Field II. Resolution and SNR are compared with uncoded STA imaging and conventional phased-array imaging. The range resolution remains the same for coded STA imaging with four emissions and is slightly degraded for STA imaging with two emissions due to the -55 dB cross-talk between the signals. The additional proposed temporal encoding adds more than 15 dB on the SNR gain, yielding a SNR at the same order as in phased-array imaging.
Quad-copter UAV BLDC Motor Control: Linear v/s non-linear control maps
Directory of Open Access Journals (Sweden)
Deep Parikh
2015-08-01
Full Text Available This paper presents some investigations and comparison of using linear versus non-linear static motor-control maps for the speed control of a BLDC (Brush Less Direct Current motors used in quad-copter UAV (Unmanned Aerial Vehicles. The motor-control map considered here is the inverse of the static map relating motor-speed output to motor-voltage input for a typical out-runner type Brushless DC Motors (BLDCM. Traditionally, quad-copter BLDC motor speed control uses simple linear motor-control map defined by the motor-constant specification. However, practical BLDC motors show non-linear characteristic, particularly when operated across wide operating speed-range as is commonly required in quad-copter UAV flight operations. In this paper, our investigations to compare performance of linear versus non-linear motor-control maps are presented. The investigations cover simulation-based and experimental study of BLDC motor speed control systems for quad-copter vehicle available. First the non-linear map relating rotor RPM to motor voltage for quad-copter BLDC motor is obtained experimentally using an optical speed encoder. The performance of the linear versus non-linear motor-control-maps for the speed control are studied. The investigations also cover study of time-responses for various standard test input-signals e.g. step, ramp and pulse inputs, applied as the reference speed-commands. Also, simple 2-degree of freedom test-bed is developed in our laboratory to help test the open-loop and closed-loop experimental investigations. The non-linear motor-control map is found to perform better in BLDC motor speed tracking control performance and thereby helping achieve better quad-copter roll-angle attitude control.
An encoding device and a method of encoding
DEFF Research Database (Denmark)
2012-01-01
The present invention relates to an encoding device, such as an optical position encoder, for encoding input from an object, and a method for encoding input from an object, for determining a position of an object that interferes with light of the device. The encoding device comprises a light source...... in the area in the space and may interfere with the light, which interference may be encoded into a position or activation....
Two-layer contractive encodings for learning stable nonlinear features.
Schulz, Hannes; Cho, Kyunghyun; Raiko, Tapani; Behnke, Sven
2015-04-01
Unsupervised learning of feature hierarchies is often a good strategy to initialize deep architectures for supervised learning. Most existing deep learning methods build these feature hierarchies layer by layer in a greedy fashion using either auto-encoders or restricted Boltzmann machines. Both yield encoders which compute linear projections of input followed by a smooth thresholding function. In this work, we demonstrate that these encoders fail to find stable features when the required computation is in the exclusive-or class. To overcome this limitation, we propose a two-layer encoder which is less restricted in the type of features it can learn. The proposed encoder is regularized by an extension of previous work on contractive regularization. This proposed two-layer contractive encoder potentially poses a more difficult optimization problem, and we further propose to linearly transform hidden neurons of the encoder to make learning easier. We demonstrate the advantages of the two-layer encoders qualitatively on artificially constructed datasets as well as commonly used benchmark datasets. We also conduct experiments on a semi-supervised learning task and show the benefits of the proposed two-layer encoders trained with the linear transformation of perceptrons. Copyright © 2014 Elsevier Ltd. All rights reserved.
Energy Technology Data Exchange (ETDEWEB)
Markovic, B.; Tamborini, D.; Villa, F.; Tisa, S.; Tosi, A.; Zappa, F. [Politecnico di Milano, Dipartimento di Elettronica e Informazione, Piazza Leonardo da Vinci 32, 20133 Milano (Italy)
2012-07-15
We present a compact high performance time-to-digital converter (TDC) module that provides 10 ps timing resolution, 160 ns dynamic range and a differential non-linearity better than 1.5% LSB{sub rms}. The TDC can be operated either as a general-purpose time-interval measurement device, when receiving external START and STOP pulses, or in photon-timing mode, when employing the on-chip SPAD (single photon avalanche diode) detector for detecting photons and time-tagging them. The instrument precision is 15 ps{sub rms} (i.e., 36 ps{sub FWHM}) and in photon timing mode it is still better than 70 ps{sub FWHM}. The USB link to the remote PC allows the easy setting of measurement parameters, the fast download of acquired data, and their visualization and storing via an user-friendly software interface. The module proves to be the best candidate for a wide variety of applications such as: fluorescence lifetime imaging, time-of-flight ranging measurements, time-resolved positron emission tomography, single-molecule spectroscopy, fluorescence correlation spectroscopy, diffuse optical tomography, optical time-domain reflectometry, quantum optics, etc.
Said-Houari, Belkacem
2017-01-01
This self-contained, clearly written textbook on linear algebra is easily accessible for students. It begins with the simple linear equation and generalizes several notions from this equation for the system of linear equations and introduces the main ideas using matrices. It then offers a detailed chapter on determinants and introduces the main ideas with detailed proofs. The third chapter introduces the Euclidean spaces using very simple geometric ideas and discusses various major inequalities and identities. These ideas offer a solid basis for understanding general Hilbert spaces in functional analysis. The following two chapters address general vector spaces, including some rigorous proofs to all the main results, and linear transformation: areas that are ignored or are poorly explained in many textbooks. Chapter 6 introduces the idea of matrices using linear transformation, which is easier to understand than the usual theory of matrices approach. The final two chapters are more advanced, introducing t...
Dynamical encoding of cursive handwriting.
Singer, Y; Tishby, N
1994-01-01
A model-based approach to on-line cursive handwriting analysis and recognition is presented and evaluated. In this model, on-line handwriting is considered as a modulation of a simple cycloidal pen motion, described by two coupled oscillations with a constant linear drift along the line of the writing. By slow modulations of the amplitudes and phase lags of the two oscillators, a general pen trajectory can be efficiently encoded. These parameters are then quantized into a small number of values without altering the writing intelligibility. A general procedure for the estimation and quantization of these cycloidal motion parameters for arbitrary handwriting is presented. The result is a discrete motor control representation of the continuous pen motion, via the quantized levels of the model parameters. This motor control representation enables successful word spotting and matching of cursive scripts. Our experiments clearly indicate the potential of this dynamic representation for complete cursive handwriting recognition.
Linearity in Process Languages
DEFF Research Database (Denmark)
Nygaard, Mikkel; Winskel, Glynn
2002-01-01
The meaning and mathematical consequences of linearity (managing without a presumed ability to copy) are studied for a path-based model of processes which is also a model of affine-linear logic. This connection yields an affine-linear language for processes, automatically respecting open-map bisi......The meaning and mathematical consequences of linearity (managing without a presumed ability to copy) are studied for a path-based model of processes which is also a model of affine-linear logic. This connection yields an affine-linear language for processes, automatically respecting open......-map bisimulation, in which a range of process operations can be expressed. An operational semantics is provided for the tensor fragment of the language. Different ways to make assemblies of processes lead to different choices of exponential, some of which respect bisimulation....
Stoll, R R
1968-01-01
Linear Algebra is intended to be used as a text for a one-semester course in linear algebra at the undergraduate level. The treatment of the subject will be both useful to students of mathematics and those interested primarily in applications of the theory. The major prerequisite for mastering the material is the readiness of the student to reason abstractly. Specifically, this calls for an understanding of the fact that axioms are assumptions and that theorems are logical consequences of one or more axioms. Familiarity with calculus and linear differential equations is required for understand
Linear optics based nanoscopy.
Gur, Aviram; Fixler, Dror; Micó, Vicente; Garcia, Javier; Zalevsky, Zeev
2010-10-11
Classically, optical systems are considered to have a fundamental resolution limit due to wave nature of light. This article presents a novel method for observing sub-wavelength features in a conventional optical microscope using linear optics. The operation principle is based on a random and time varying flow of nanoparticles moving in proximity to the inspected sample. Those particles excite the evanescent waves and couple them into harmonic waves. The sub-wavelength features are encoded and later on digitally decoded by proper image processing of a sequence of images. The achievable final resolution limit corresponds to the size of the nanoparticles. Experimental proof of principle validation of the technique is reported.
Linear Algebra and Linear Models
Indian Academy of Sciences (India)
This monograph provides an introduction to the basic aspects of the theory oflinear estima- tion and that of testing linear hypotheses. The primary objective is to provide a basic knowledge of analysis of linear models to advanced undergraduate or first year Master's students. The second edition virtually covers the same ...
Lazar, Aurel A; Pnevmatikakis, Eftychios A
2011-03-01
We investigate architectures for time encoding and time decoding of visual stimuli such as natural and synthetic video streams (movies, animation). The architecture for time encoding is akin to models of the early visual system. It consists of a bank of filters in cascade with single-input multi-output neural circuits. Neuron firing is based on either a threshold-and-fire or an integrate-and-fire spiking mechanism with feedback. We show that analog information is represented by the neural circuits as projections on a set of band-limited functions determined by the spike sequence. Under Nyquist-type and frame conditions, the encoded signal can be recovered from these projections with arbitrary precision. For the video time encoding machine architecture, we demonstrate that band-limited video streams of finite energy can be faithfully recovered from the spike trains and provide a stable algorithm for perfect recovery. The key condition for recovery calls for the number of neurons in the population to be above a threshold value.
IDENTIFICATION OF ENCODED BEADS
DEFF Research Database (Denmark)
2005-01-01
The present invention is relates to methods for the identification of spatially encoded beaded or granulated matrices comprising a plurality of immobilised particles. The identification is based on a distance matrix determination or based on a set of geometrical figures, such a triangles...
Liesen, Jörg
2015-01-01
This self-contained textbook takes a matrix-oriented approach to linear algebra and presents a complete theory, including all details and proofs, culminating in the Jordan canonical form and its proof. Throughout the development, the applicability of the results is highlighted. Additionally, the book presents special topics from applied linear algebra including matrix functions, the singular value decomposition, the Kronecker product and linear matrix equations. The matrix-oriented approach to linear algebra leads to a better intuition and a deeper understanding of the abstract concepts, and therefore simplifies their use in real world applications. Some of these applications are presented in detailed examples. In several ‘MATLAB-Minutes’ students can comprehend the concepts and results using computational experiments. Necessary basics for the use of MATLAB are presented in a short introduction. Students can also actively work with the material and practice their mathematical skills in more than 300 exerc...
Searle, Shayle R
2012-01-01
This 1971 classic on linear models is once again available--as a Wiley Classics Library Edition. It features material that can be understood by any statistician who understands matrix algebra and basic statistical methods.
Solow, Daniel
2014-01-01
This text covers the basic theory and computation for a first course in linear programming, including substantial material on mathematical proof techniques and sophisticated computation methods. Includes Appendix on using Excel. 1984 edition.
Berberian, Sterling K
2014-01-01
Introductory treatment covers basic theory of vector spaces and linear maps - dimension, determinants, eigenvalues, and eigenvectors - plus more advanced topics such as the study of canonical forms for matrices. 1992 edition.
Christofilos, N.C.; Polk, I.J.
1959-02-17
Improvements in linear particle accelerators are described. A drift tube system for a linear ion accelerator reduces gap capacity between adjacent drift tube ends. This is accomplished by reducing the ratio of the diameter of the drift tube to the diameter of the resonant cavity. Concentration of magnetic field intensity at the longitudinal midpoint of the external sunface of each drift tube is reduced by increasing the external drift tube diameter at the longitudinal center region.
Using XML to encode TMA DES metadata
Directory of Open Access Journals (Sweden)
Oliver Lyttleton
2011-01-01
Full Text Available Background: The Tissue Microarray Data Exchange Specification (TMA DES is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. Materials and Methods: We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. Results: We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. Conclusions: All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.
Using XML to encode TMA DES metadata.
Lyttleton, Oliver; Wright, Alexander; Treanor, Darren; Lewis, Paul
2011-01-01
The Tissue Microarray Data Exchange Specification (TMA DES) is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.
Olive, David J
2017-01-01
This text covers both multiple linear regression and some experimental design models. The text uses the response plot to visualize the model and to detect outliers, does not assume that the error distribution has a known parametric distribution, develops prediction intervals that work when the error distribution is unknown, suggests bootstrap hypothesis tests that may be useful for inference after variable selection, and develops prediction regions and large sample theory for the multivariate linear regression model that has m response variables. A relationship between multivariate prediction regions and confidence regions provides a simple way to bootstrap confidence regions. These confidence regions often provide a practical method for testing hypotheses. There is also a chapter on generalized linear models and generalized additive models. There are many R functions to produce response and residual plots, to simulate prediction intervals and hypothesis tests, to detect outliers, and to choose response trans...
Sahai, Vivek
2013-01-01
Beginning with the basic concepts of vector spaces such as linear independence, basis and dimension, quotient space, linear transformation and duality with an exposition of the theory of linear operators on a finite dimensional vector space, this book includes the concept of eigenvalues and eigenvectors, diagonalization, triangulation and Jordan and rational canonical forms. Inner product spaces which cover finite dimensional spectral theory and an elementary theory of bilinear forms are also discussed. This new edition of the book incorporates the rich feedback of its readers. We have added new subject matter in the text to make the book more comprehensive. Many new examples have been discussed to illustrate the text. More exercises have been included. We have taken care to arrange the exercises in increasing order of difficulty. There is now a new section of hints for almost all exercises, except those which are straightforward, to enhance their importance for individual study and for classroom use.
Edwards, Harold M
1995-01-01
In his new undergraduate textbook, Harold M Edwards proposes a radically new and thoroughly algorithmic approach to linear algebra Originally inspired by the constructive philosophy of mathematics championed in the 19th century by Leopold Kronecker, the approach is well suited to students in the computer-dominated late 20th century Each proof is an algorithm described in English that can be translated into the computer language the class is using and put to work solving problems and generating new examples, making the study of linear algebra a truly interactive experience Designed for a one-semester course, this text adopts an algorithmic approach to linear algebra giving the student many examples to work through and copious exercises to test their skills and extend their knowledge of the subject Students at all levels will find much interactive instruction in this text while teachers will find stimulating examples and methods of approach to the subject
Munkhdalai, Tsendsuren; Yu, Hong
2017-04-01
We present a memory augmented neural network for natural language understanding: Neural Semantic Encoders. NSE is equipped with a novel memory update rule and has a variable sized encoding memory that evolves over time and maintains the understanding of input sequences through read, compose and write operations. NSE can also access multiple and shared memories. In this paper, we demonstrated the effectiveness and the flexibility of NSE on five different natural language tasks: natural language inference, question answering, sentence classification, document sentiment analysis and machine translation where NSE achieved state-of-the-art performance when evaluated on publically available benchmarks. For example, our shared-memory model showed an encouraging result on neural machine translation, improving an attention-based baseline by approximately 1.0 BLEU.
A technique based on pulse shape comparison for linearizing compressed signals
Cattaneo, P W
2002-01-01
A nuclear electronics system designed to perform high precision energy measurement on a large dynamic range through high speed sampling of the output might be impossible to match to an adequate ADC. A solution consists in compressing the signal before digitization and linearizing it after with a look-up table, encoding the inverse of the compression function. This look-up table can be constructed using test pulses, the smallest of which is in the linear part and the largest spans the whole dynamic range. Reconstructing these pulse shapes and requiring them to be omothetic generates the look-up table providing a minimal distortion in the RMS sense.
Allenby, Reg
1995-01-01
As the basis of equations (and therefore problem-solving), linear algebra is the most widely taught sub-division of pure mathematics. Dr Allenby has used his experience of teaching linear algebra to write a lively book on the subject that includes historical information about the founders of the subject as well as giving a basic introduction to the mathematics undergraduate. The whole text has been written in a connected way with ideas introduced as they occur naturally. As with the other books in the series, there are many worked examples.Solutions to the exercises are available onlin
Linearity in Process Languages
DEFF Research Database (Denmark)
Nygaard, Mikkel; Winskel, Glynn
2002-01-01
The meaning and mathematical consequences of linearity (managing without a presumed ability to copy) are studied for a path-based model of processes which is also a model of affine-linear logic. This connection yields an affine-linear language for processes, automatically respecting open......-map bisimulation, in which a range of process operations can be expressed. An operational semantics is provided for the tensor fragment of the language. Different ways to make assemblies of processes lead to different choices of exponential, some of which respect bisimulation....
Control Theory for Linear Systems
Trentelman, Harry L.; Stoorvogel, Antonie Arij; Hautus, Malo
2001-01-01
Control Theory for Linear Systems deals with the mathematical theory of feedback control of linear systems. It treats a wide range of control synthesis problems for linear state space systems with inputs and outputs. The book provides a treatment of these problems using state space methods, often
Genetically encoded fluorescent redox sensors.
Lukyanov, Konstantin A; Belousov, Vsevolod V
2014-02-01
Life is a constant flow of electrons via redox couples. Redox reactions determine many if not all major cellular functions. Until recently, redox processes remained hidden from direct observation in living systems due to the lack of adequate methodology. Over the last years, imaging tools including small molecule probes and genetically encoded sensors appeared, which provided, for the first time, an opportunity to visualize and, in some cases, quantify redox reactions in live cells. Genetically encoded fluorescent redox probes, such as HyPer, rxYFP and roGFPs, have been used in several models, ranging from cultured cells to transgenic animals, and now enough information has been collected to highlight advantages and pitfalls of these probes. In this review, we describe the main types of genetically encoded redox probes, their essential properties, advantages and disadvantages. We also provide an overview of the most important, in our opinion, results obtained using these probes. Finally, we discuss redox-dependent photoconversions of GFP and other prospective directions in redox probe development. Fluorescent protein-based redox probes have important advantages such as high specificity, possibility of transgenesis and fine subcellular targeting. For proper selection of a redox sensor for a particular model, it is important to understand that HyPer and roGFP2-Orp1 are the probes for H2O2, whereas roGFP1/2, rxYFP and roGFP2-Grx1 are the probes for GSH/GSSG redox state. Possible pH changes should be carefully controlled in experiments with HyPer and rxYFP. Genetically encoded redox probes are the only instruments allowing real-time monitoring of reactive oxygen species and thiol redox state in living cells and tissues. We believe that in the near future the palette of FP-based redox probes will be expanded to red and far-red parts of the spectrum and to other important reactive species such as NO, O2 and superoxide. This article is part of a Special Issue entitled
Karloff, Howard
1991-01-01
To this reviewer’s knowledge, this is the first book accessible to the upper division undergraduate or beginning graduate student that surveys linear programming from the Simplex Method…via the Ellipsoid algorithm to Karmarkar’s algorithm. Moreover, its point of view is algorithmic and thus it provides both a history and a case history of work in complexity theory. The presentation is admirable; Karloff's style is informal (even humorous at times) without sacrificing anything necessary for understanding. Diagrams (including horizontal brackets that group terms) aid in providing clarity. The end-of-chapter notes are helpful...Recommended highly for acquisition, since it is not only a textbook, but can also be used for independent reading and study. —Choice Reviews The reader will be well served by reading the monograph from cover to cover. The author succeeds in providing a concise, readable, understandable introduction to modern linear programming. —Mathematics of Computing This is a textbook intend...
Evidence for a Mechanism Encoding Audiovisual Spatial Separation
Directory of Open Access Journals (Sweden)
Emily Orchard-Mills
2011-10-01
Full Text Available Auditory and visual spatial representations are produced by distinct processes, drawing on separate neural inputs and occurring in different regions of the brain. We tested for a bimodal spatial representation using a spatial increment discrimination task. Discrimination thresholds for synchronously presented but spatially separated audiovisual stimuli were measured for base separations ranging from 0° to 45°. In a dark anechoic chamber, the spatial interval was defined by azimuthal separation of a white-noise burst from a speaker on a movable robotic arm and a checkerboard patch 5° wide projected onto an acoustically transparent screen. When plotted as a function of base interval, spatial increment thresholds exhibited a J-shaped pattern. Thresholds initially declined, the minimum occurring at base separations approximately equal to the individual observer's detection threshold and thereafter rose log-linearly according to Weber's law. This pattern of results, known as the ‘dipper function’, would be expected if the auditory and visual signals defining the spatial interval converged onto an early sensory filter encoding audiovisual space. This mechanism could be used to encode spatial separation of auditory and visual stimuli.
Bourlès, Henri
2013-01-01
Linear systems have all the necessary elements (modeling, identification, analysis and control), from an educational point of view, to help us understand the discipline of automation and apply it efficiently. This book is progressive and organized in such a way that different levels of readership are possible. It is addressed both to beginners and those with a good understanding of automation wishing to enhance their knowledge on the subject. The theory is rigorously developed and illustrated by numerous examples which can be reproduced with the help of appropriate computation software. 60 exe
Encoding the Factorisation Calculus
Directory of Open Access Journals (Sweden)
Reuben N. S. Rowe
2015-08-01
Full Text Available Jay and Given-Wilson have recently introduced the Factorisation (or SF- calculus as a minimal fundamental model of intensional computation. It is a combinatory calculus containing a special combinator, F, which is able to examine the internal structure of its first argument. The calculus is significant in that as well as being combinatorially complete it also exhibits the property of structural completeness, i.e. it is able to represent any function on terms definable using pattern matching on arbitrary normal forms. In particular, it admits a term that can decide the structural equality of any two arbitrary normal forms. Since SF-calculus is combinatorially complete, it is clearly at least as powerful as the more familiar and paradigmatic Turing-powerful computational models of Lambda Calculus and Combinatory Logic. Its relationship to these models in the converse direction is less obvious, however. Jay and Given-Wilson have suggested that SF-calculus is strictly more powerful than the aforementioned models, but a detailed study of the connections between these models is yet to be undertaken. This paper begins to bridge that gap by presenting a faithful encoding of the Factorisation Calculus into the Lambda Calculus preserving both reduction and strong normalisation. The existence of such an encoding is a new result. It also suggests that there is, in some sense, an equivalence between the former model and the latter. We discuss to what extent our result constitutes an equivalence by considering it in the context of some previously defined frameworks for comparing computational power and expressiveness.
Composite pulses for RF phase encoded MRI: A simulation study.
Salajeghe, Somaie; Babyn, Paul; Sarty, Gordon E
2017-02-01
In B1 encoded MRI, a realistic non-linear phase RF encoding coil will generate an inhomogeneous B1 field that leads to spatially dependent flip angles. The non-linearity of the B1 phase gradient can be compensated for in the reconstruction, but B1 inhomogeneity remains a problem. The effect of B1 inhomogeneity on tip angles for conventional, B0 encoded MRI, may be minimized using composite pulses. The objective of this study was to explore the feasibility of using composite pulses with non-linear RF phase encoding coils and to identify the most appropriate composite pulse scheme. RF encoded signals were simulated via the Bloch equation for various symmetric, asymmetric and antisymmetric composite pulses. The simulated signals were reconstructed using a constrained least squares method. Root mean square reconstruction errors varied from 6% (for an asymmetric composite pulse) to 9.7% (for an antisymmetric composite pulse). An asymmetric composite pulse scheme created images with fewer artifacts than other composite pulse schemes in inhomogeneous B0 and B1 fields making it the best choice for decreasing the effects of spatially varying flip angles. This is contrary to the conclusion that antisymmetric composite pulses are the best ones to use for spin echo sequences in conventional, B0 encoded, MRI. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.
Temporal encoding in a nervous system.
Directory of Open Access Journals (Sweden)
Zane N Aldworth
2011-05-01
Full Text Available We examined the extent to which temporal encoding may be implemented by single neurons in the cercal sensory system of the house cricket Acheta domesticus. We found that these neurons exhibit a greater-than-expected coding capacity, due in part to an increased precision in brief patterns of action potentials. We developed linear and non-linear models for decoding the activity of these neurons. We found that the stimuli associated with short-interval patterns of spikes (ISIs of 8 ms or less could be predicted better by second-order models as compared to linear models. Finally, we characterized the difference between these linear and second-order models in a low-dimensional subspace, and showed that modification of the linear models along only a few dimensions improved their predictive power to parity with the second order models. Together these results show that single neurons are capable of using temporal patterns of spikes as fundamental symbols in their neural code, and that they communicate specific stimulus distributions to subsequent neural structures.
Data-driven encoding for quantitative genetic trait prediction.
He, Dan; Wang, Zhanyong; Parida, Laxmi
2015-01-01
Given a set of biallelic molecular markers, such as SNPs, with genotype values on a collection of plant, animal or human samples, the goal of quantitative genetic trait prediction is to predict the quantitative trait values by simultaneously modeling all marker effects. Quantitative genetic trait prediction is usually represented as linear regression models which require quantitative encodings for the genotypes: the three distinct genotype values, corresponding to one heterozygous and two homozygous alleles, are usually coded as integers, and manipulated algebraically in the model. Further, epistasis between multiple markers is modeled as multiplication between the markers: it is unclear that the regression model continues to be effective under this. In this work we investigate the effects of encodings to the quantitative genetic trait prediction problem. We first showed that different encodings lead to different prediction accuracies, in many test cases. We then proposed a data-driven encoding strategy, where we encode the genotypes according to their distribution in the phenotypes and we allow each marker to have different encodings. We show in our experiments that this encoding strategy is able to improve the performance of the genetic trait prediction method and it is more helpful for the oligogenic traits, whose values rely on a relatively small set of markers. To the best of our knowledge, this is the first paper that discusses the effects of encodings to the genetic trait prediction problem.
A high-accuracy optical linear algebra processor for finite element applications
Casasent, D.; Taylor, B. K.
1984-01-01
Optical linear processors are computationally efficient computers for solving matrix-matrix and matrix-vector oriented problems. Optical system errors limit their dynamic range to 30-40 dB, which limits their accuray to 9-12 bits. Large problems, such as the finite element problem in structural mechanics (with tens or hundreds of thousands of variables) which can exploit the speed of optical processors, require the 32 bit accuracy obtainable from digital machines. To obtain this required 32 bit accuracy with an optical processor, the data can be digitally encoded, thereby reducing the dynamic range requirements of the optical system (i.e., decreasing the effect of optical errors on the data) while providing increased accuracy. This report describes a new digitally encoded optical linear algebra processor architecture for solving finite element and banded matrix-vector problems. A linear static plate bending case study is described which quantities the processor requirements. Multiplication by digital convolution is explained, and the digitally encoded optical processor architecture is advanced.
Source location encoding in the fish lateral line canal
Curcic-Blake, B; van Netten, SM
2006-01-01
The position of a hydrodynamic dipole source, as encoded in a linear array of mechano-detecting neuromasts in the fish lateral line canal, was electrophysiologically investigated. Measured excitation patterns along the lateral line were compared to theoretical predictions and were found to be in
Hood, John Linsley
2013-01-01
The Art of Linear Electronics presents the principal aspects of linear electronics and techniques in linear electronic circuit design. The book provides a wide range of information on the elucidation of the methods and techniques in the design of linear electronic circuits. The text discusses such topics as electronic component symbols and circuit drawing; passive and active semiconductor components; DC and low frequency amplifiers; and the basic effects of feedback. Subjects on frequency response modifying circuits and filters; audio amplifiers; low frequency oscillators and waveform generato
Yun, Paul M.
The Pulse Coded Modulation (PCM) Encoder Systems used in telemetry have gained enormous flexibility for various applications because the input data channels and frame sync codes are programmable via the EEPROMs or UVEPROMs. The firmware in the current PCM Encoder Systems can be readily tailored for a specific application to monitor numerous types of analog channels, as well as digital channels. However, the current PCM Encoder Systems require several types of strap options which dictate not only a limited choice of gains and offsets, but also a fixed choice of the premodulation filter characteristics. The brain of the 1000 PCM Encoder is the Digital Signal Processor (DSP) which eliminates the fixed premodulation filter characteristics via digital filter functions, and also eliminates strap options via general purpose microprocessor functions.
Linear Algebra and Smarandache Linear Algebra
Vasantha, Kandasamy
2003-01-01
The present book, on Smarandache linear algebra, not only studies the Smarandache analogues of linear algebra and its applications, it also aims to bridge the need for new research topics pertaining to linear algebra, purely in the algebraic sense. We have introduced Smarandache semilinear algebra, Smarandache bilinear algebra and Smarandache anti-linear algebra and their fuzzy equivalents. Moreover, in this book, we have brought out the study of linear algebra and ve...
DEFF Research Database (Denmark)
Jørgensen, Allan Grønlund; Larsen, Kasper Green
2011-01-01
that supports queries in constant time, needs n1+ (1) space. For data structures that uses n logO(1) n space this matches the best known upper bound. Additionally, we present a linear space data structure that supports range selection queries in O(log k= log log n + log log n) time. Finally, we prove that any...
Extended linear chain compounds
Linear chain substances span a large cross section of contemporary chemistry ranging from covalent polymers, to organic charge transfer com plexes to nonstoichiometric transition metal coordination complexes. Their commonality, which coalesced intense interest in the theoretical and exper imental solid state physics/chemistry communities, was based on the obser vation that these inorganic and organic polymeric substrates exhibit striking metal-like electrical and optical properties. Exploitation and extension of these systems has led to the systematic study of both the chemistry and physics of highly and poorly conducting linear chain substances. To gain a salient understanding of these complex materials rich in anomalous aniso tropic electrical, optical, magnetic, and mechanical properties, the conver gence of diverse skills and talents was required. The constructive blending of traditionally segregated disciplines such as synthetic and physical organic, inorganic, and polymer chemistry, crystallog...
pENCODE: a plant encyclopedia of DNA elements.
Lane, Amanda K; Niederhuth, Chad E; Ji, Lexiang; Schmitz, Robert J
2014-01-01
ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE.
pENCODE: A Plant Encyclopedia of DNA Elements
Lane, Amanda K.; Niederhuth, Chad E.; Ji, Lexiang; Schmitz, Robert J.
2015-01-01
ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE. PMID:25149370
Dynamic properties of the action potential encoder in an insect mechanosensory neuron.
French, A.S.
1984-01-01
A variety of sensory receptors show adaptation to dynamic stimuli that can be well characterized as fractional differentiation of the input signal. The cause of this behavior is unknown, but because it can be represented by linear systems theory, it has been assumed to arise during early linear processes of transduction or adaptation, rather than during the nonlinear process of action potential encoding. I measured the action potential encoding properties of an insect mechanoreceptor by direc...
Fly Photoreceptors Encode Phase Congruency.
Directory of Open Access Journals (Sweden)
Uwe Friederich
Full Text Available More than five decades ago it was postulated that sensory neurons detect and selectively enhance behaviourally relevant features of natural signals. Although we now know that sensory neurons are tuned to efficiently encode natural stimuli, until now it was not clear what statistical features of the stimuli they encode and how. Here we reverse-engineer the neural code of Drosophila photoreceptors and show for the first time that photoreceptors exploit nonlinear dynamics to selectively enhance and encode phase-related features of temporal stimuli, such as local phase congruency, which are invariant to changes in illumination and contrast. We demonstrate that to mitigate for the inherent sensitivity to noise of the local phase congruency measure, the nonlinear coding mechanisms of the fly photoreceptors are tuned to suppress random phase signals, which explains why photoreceptor responses to naturalistic stimuli are significantly different from their responses to white noise stimuli.
Genetically Encoded Fluorescent Redox Probes
Directory of Open Access Journals (Sweden)
Hui-Wang Ai
2013-11-01
Full Text Available Redox processes are involved in almost every cell of the body as a consequence of aerobic life. In the past decades, redox biology has been increasingly recognized as one of the key themes in cell signaling. The progress has been accelerated by development of fluorescent probes that can monitor redox conditions and dynamics in cells and cell compartments. This short paper focuses on fluorescent redox probes that are genetically encoded, and discusses their properties, molecular mechanism, advantages and pitfalls. Our recent work on reaction-based encoded probes that are responsive to particular redox signaling molecules is also reviewed. Future challenges and directions are also commented.
Genetically encoded fluorescent redox probes.
Ren, Wei; Ai, Hui-Wang
2013-11-11
Redox processes are involved in almost every cell of the body as a consequence of aerobic life. In the past decades, redox biology has been increasingly recognized as one of the key themes in cell signaling. The progress has been accelerated by development of fluorescent probes that can monitor redox conditions and dynamics in cells and cell compartments. This short paper focuses on fluorescent redox probes that are genetically encoded, and discusses their properties, molecular mechanism, advantages and pitfalls. Our recent work on reaction-based encoded probes that are responsive to particular redox signaling molecules is also reviewed. Future challenges and directions are also commented.
Functionalized linear and cyclic polyolefins
Energy Technology Data Exchange (ETDEWEB)
Tuba, Robert; Grubbs, Robert H.
2018-02-13
This invention relates to methods and compositions for preparing linear and cyclic polyolefins. More particularly, the invention relates to methods and compositions for preparing functionalized linear and cyclic polyolefins via olefin metathesis reactions. Polymer products produced via the olefin metathesis reactions of the invention may be utilized for a wide range of materials applications. The invention has utility in the fields of polymer and materials chemistry and manufacture.
Diamond, Jared M.
1966-01-01
1. The relation between osmotic gradient and rate of osmotic water flow has been measured in rabbit gall-bladder by a gravimetric procedure and by a rapid method based on streaming potentials. Streaming potentials were directly proportional to gravimetrically measured water fluxes. 2. As in many other tissues, water flow was found to vary with gradient in a markedly non-linear fashion. There was no consistent relation between the water permeability and either the direction or the rate of water flow. 3. Water flow in response to a given gradient decreased at higher osmolarities. The resistance to water flow increased linearly with osmolarity over the range 186-825 m-osM. 4. The resistance to water flow was the same when the gall-bladder separated any two bathing solutions with the same average osmolarity, regardless of the magnitude of the gradient. In other words, the rate of water flow is given by the expression (Om — Os)/[Ro′ + ½k′ (Om + Os)], where Ro′ and k′ are constants and Om and Os are the bathing solution osmolarities. 5. Of the theories advanced to explain non-linear osmosis in other tissues, flow-induced membrane deformations, unstirred layers, asymmetrical series-membrane effects, and non-osmotic effects of solutes could not explain the results. However, experimental measurements of water permeability as a function of osmolarity permitted quantitative reconstruction of the observed water flow—osmotic gradient curves. Hence non-linear osmosis in rabbit gall-bladder is due to a decrease in water permeability with increasing osmolarity. 6. The results suggest that aqueous channels in the cell membrane behave as osmometers, shrinking in concentrated solutions of impermeant molecules and thereby increasing membrane resistance to water flow. A mathematical formulation of such a membrane structure is offered. PMID:5945254
Development of a reflective optical encoder with submicron accuracy
Ye, Guoyong; Liu, Hongzhong; Ban, Yaowen; Shi, Yongsheng; Yin, Lei; Lu, Bingheng
2018-03-01
Signal distortion is a key issue that limits the measurement resolution and accuracy of optical encoders. In this paper, an optical encoder based on generalized grating imaging using a two-dimensional index grating is presented. The general expression of intensity distribution for generalized grating imaging including the relative displacement between the scale grating and the reading head is derived, and the formation of the signal distortion of the optical encoder is analyzed. Then, a two-dimensional index grating, which consists of multiple grating tracks with defined offsets, is proposed to suppress the dominant third and fifth order harmonic signals. The operating principle of the two-dimensional index grating is explained in detail and a reflective optical encoder is developed. In the experiment, approximately ideal Lissajous figure of the encoder signals is obtained. Fourier analysis of the encoder signals shows that both the third and fifth order harmonic distortions are below 0.6%. Experimental results show that the interpolation error of the optical encoder is within ± 0 . 18 μm, and the accuracy is better than ± 0 . 3 μm over 255 mm travel range with a maximum variation of 0.136 μm.
Air Gauge Characteristics Linearity Improvement
Directory of Open Access Journals (Sweden)
Cz. J. Jermak
2016-01-01
Full Text Available This paper discusses calibration uncertainty and linearity issues of the typical back-pressure air gauge. In this sort of air gauge, the correlation between the measured dimension (represented by the slot width and the air pressure in the measuring chamber is used in a proportional range. However, when high linearity is required (e.g., nonlinearity less than 1%, the measuring range should be shortened. In the proposed method, based on knowledge of the static characteristics of air gauges, the measuring range is kept unchanged but the nonlinearity is decreased. The static characteristics may be separated into two sections, each of them approximated with a different linear function. As a result, the nonlinearity is reduced from 5% down to 1% and even below.
Early Decoding and Encoding Strategies.
Goldwater-Rozensher, Susan; Hebard, Amy J.
A combination of case study observation and mini-experimentation techniques were used to examine a number of issues of relevance in the study of the acquisition of beginning reading skills. Six children were divided equally among three instructional modes: phonics, whole word, and mixed. They were asked to decode and encode words, and their…
Linearly constrained minimax optimization
DEFF Research Database (Denmark)
Madsen, Kaj; Schjær-Jacobsen, Hans
1978-01-01
We present an algorithm for nonlinear minimax optimization subject to linear equality and inequality constraints which requires first order partial derivatives. The algorithm is based on successive linear approximations to the functions defining the problem. The resulting linear subproblems...
Bolton, W
1995-01-01
This book is concerned with linear equations and matrices, with emphasis on the solution of simultaneous linear equations. The solution of simultaneous linear equations is applied to electric circuit analysis and structural analysis.
Linear feedback controls the essentials
Haidekker, Mark A
2013-01-01
The design of control systems is at the very core of engineering. Feedback controls are ubiquitous, ranging from simple room thermostats to airplane engine control. Helping to make sense of this wide-ranging field, this book provides a new approach by keeping a tight focus on the essentials with a limited, yet consistent set of examples. Analysis and design methods are explained in terms of theory and practice. The book covers classical, linear feedback controls, and linear approximations are used when needed. In parallel, the book covers time-discrete (digital) control systems and juxtapos
Foundations of linear and generalized linear models
Agresti, Alan
2015-01-01
A valuable overview of the most important ideas and results in statistical analysis Written by a highly-experienced author, Foundations of Linear and Generalized Linear Models is a clear and comprehensive guide to the key concepts and results of linear statistical models. The book presents a broad, in-depth overview of the most commonly used statistical models by discussing the theory underlying the models, R software applications, and examples with crafted models to elucidate key ideas and promote practical model building. The book begins by illustrating the fundamentals of linear models,
Multi-Element Synthetic Transmit Aperture Imaging using Temporal Encoding
DEFF Research Database (Denmark)
Gammelmark, Kim; Jensen, Jørgen Arendt
2002-01-01
show better performance for EMESTA imaging after the linear array focus. Both methods have similar contrast performance. Measurements areperformed using our experimental multi-channel ultrasound scanning system, RASMUS. The designed linear FM signal obtains temporal side lobes below -55 dB, and SNR......A new method to increase the signal-to-noise-ratio (SNR) of synthetic transmit aperture (STA) imaging is investigated. The new approach is called temporally Encoded Multi-Element STA imaging (EMESTA). It utilizes multiple elements to emulate a single transmit element, and the conventional short...
A Differential Monolithically Integrated Inductive Linear Displacement Measurement Microsystem
Directory of Open Access Journals (Sweden)
Matija Podhraški
2016-03-01
Full Text Available An inductive linear displacement measurement microsystem realized as a monolithic Application-Specific Integrated Circuit (ASIC is presented. The system comprises integrated microtransformers as sensing elements, and analog front-end electronics for signal processing and demodulation, both jointly fabricated in a conventional commercially available four-metal 350-nm CMOS process. The key novelty of the presented system is its full integration, straightforward fabrication, and ease of application, requiring no external light or magnetic field source. Such systems therefore have the possibility of substituting certain conventional position encoder types. The microtransformers are excited by an AC signal in MHz range. The displacement information is modulated into the AC signal by a metal grating scale placed over the microsystem, employing a differential measurement principle. Homodyne mixing is used for the demodulation of the scale displacement information, returned by the ASIC as a DC signal in two quadrature channels allowing the determination of linear position of the target scale. The microsystem design, simulations, and characterization are presented. Various system operating conditions such as frequency, phase, target scale material and distance have been experimentally evaluated. The best results have been achieved at 4 MHz, demonstrating a linear resolution of 20 µm with steel and copper scale, having respective sensitivities of 0.71 V/mm and 0.99 V/mm.
Directory of Open Access Journals (Sweden)
Juahil Martins de Oliveira Júnior
2010-01-01
EXP (1 pH-1, and the accumulated HCl in each interval. The transformationpresented satisfactory fitting to linear regression for all materials evaluated, with r2 higher than 0.85 and standard error residual lower than 0.059. A positive correlation between TA and LB evaluated in the different ranges of pH was obtained. Unlike TA, the LB method makes itpossible to obtain the BC as a single linear ratio, valuable for every pH interval from 8.0 to 2.0.
Genetically Encoded Fluorescent Redox Probes
Hui-Wang Ai; Wei Ren
2013-01-01
Redox processes are involved in almost every cell of the body as a consequence of aerobic life. In the past decades, redox biology has been increasingly recognized as one of the key themes in cell signaling. The progress has been accelerated by development of fluorescent probes that can monitor redox conditions and dynamics in cells and cell compartments. This short paper focuses on fluorescent redox probes that are genetically encoded, and discusses their properties, molecular mechanism, adv...
Linearization of broadband microwave amplifier
Directory of Open Access Journals (Sweden)
Đorić Aleksandra
2014-01-01
Full Text Available The linearization of broadband power amplifier for application in the frequency range 0.9-1.3 GHz is considered in this paper. The amplifier is designed for LDMOSFET characterized by the maximum output power 4W designing the broadband lumped element matching circuits and matching circuits in topologies that combines LC elements and transmission lines. The linearization of the amplifier is carried out by the second harmonics of the fundamental signals injected at the input and output of the amplifier transistor. The effects of linearization are considered for the case of two sinusoidal signals separated in frequency by different intervals up to 80 MHz ranging input power levels to saturation. [Projekat Ministarstva nauke Republike Srbije, br. TR-32052
Modelling Loudspeaker Non-Linearities
DEFF Research Database (Denmark)
Agerkvist, Finn T.
2007-01-01
This paper investigates different techniques for modelling the non-linear parameters of the electrodynamic loudspeaker. The methods are tested not only for their accuracy within the range of original data, but also for the ability to work reasonable outside that range, and it is demonstrated...... property of the suspension is studied and it demonstrated that significant part of the variation can be predicted from the dissipated power....
Decomposable log-linear models
DEFF Research Database (Denmark)
Eriksen, Poul Svante
can be characterized by a structured set of conditional independencies between some variables given some other variables. We term the new model class decomposable log-linear models, which is illustrated to be a much richer class than decomposable graphical models.It covers a wide range of non...
Does long-term object priming depend on the explicit detection of object identity at encoding?
Directory of Open Access Journals (Sweden)
Carlos Alexandre Gomes
2015-03-01
Full Text Available It is currently unclear whether objects have to be explicitly identified at encoding for reliable behavioural long-term object priming to occur. We conducted two experiments that investigated long-term object and non-object priming using a selective-attention encoding manipulation that reduces explicit object identification. In Experiment 1, participants either counted dots flashed within an object picture (shallow encoding or engaged in an animacy task (deep encoding at study, whereas, at test, they performed an object-decision task. Priming, as measured by reaction times, was observed for both types of encoding, and was of equivalent magnitude. In Experiment 2, non-object priming (faster reaction times for studied relative to unstudied non-objects was also obtained under the same selective-attention encoding manipulation as in Experiment 1, and the magnitude of the priming effect was equivalent between experiments. In contrast, we observed a linear decrement in recognition memory accuracy across conditions (deep encoding of Experiment 1 > shallow encoding Experiment 1 > shallow encoding of Experiment 2, suggesting that priming was not contaminated by explicit memory strategies. We argue that our results are more consistent with the identification/production framework than the perceptual/conceptual distinction, and we conclude that priming of pictures largely ignored at encoding can be subserved by the automatic retrieval of two types of instances: one at the motor-level and another at an object-decision level.
Linear operator theory of channeled spectropolarimetry.
Sabatke, Derek S; Locke, Ann M; Dereniak, Eustace L; McMillan, Robert W
2005-08-01
Channeled spectropolarimetry is a snapshot method of measuring the spectral and polarization content of light. Wave-number domain amplitude modulation is employed to encode all four Stokes component spectra into a single optical power spectrum. We model the channeled spectropolarimeter as a linear operator, which facilitates treatment of nonideal effects and provides a convenient framework for simulations, calibration, and reconstruction. The operator's singular value decomposition is treated with analytic and computational approaches. This analysis highlights the importance of the choice of object space in constraining and imparting prior knowledge to linear reconstructions of data from underdetermined systems.
Tam, Leo K; Stockmann, Jason P; Galiana, Gigi; Constable, R Todd
2012-10-01
To increase image acquisition efficiency, we develop alternative gradient encoding strategies designed to provide spatial encoding complementary to the spatial encoding provided by the multiple receiver coil elements in parallel image acquisitions. Intuitively, complementary encoding is achieved when the magnetic field encoding gradients are designed to encode spatial information where receiver spatial encoding is ambiguous, for example, along sensitivity isocontours. Specifically, the method generates a basis set for the null space of the coil sensitivities with the singular value decomposition and calculates encoding fields from the null space vectors. A set of nonlinear gradients is used as projection imaging readout magnetic fields, replacing the conventional linear readout field and phase encoding. Multiple encoding fields are used as projections to capture the null space information, hence the term null space imaging. The method is compared to conventional Cartesian SENSitivity Encoding as evaluated by mean squared error and robustness to noise. Strategies for developments in the area of nonlinear encoding schemes are discussed. The null space imaging approach yields a parallel imaging method that provides high acceleration factors with a limited number of receiver coil array elements through increased time efficiency in spatial encoding. Copyright © 2011 Wiley Periodicals, Inc.
Hall effect encoding of brushless dc motors
Berard, C. A.; Furia, T. J.; Goldberg, E. A.; Greene, R. C.
1970-01-01
Encoding mechanism integral to the motor and using the permanent magnets embedded in the rotor eliminates the need for external devices to encode information relating the position and velocity of the rotating member.
Holographically Encoded Volume Phase Masks
2015-07-13
optics ,” Nat. Photonics 4, 188–193 (2010). 26. H. Kogelnik, “Coupled wave theory for thick volume holograms ,” Bell System Tech. J. 45(9), 2909–2944...phase masks Marc SeGall, Ivan Divliansky,* Clémence Jollivet, Axel Schülzgen, and Leonid B. Glebov University of Central Florida, College of Optics and...satisfying the Bragg condition of the hologram . Moreover, this approach enables the capability to encode and multiplex several phase masks into a single
Vranish, John
2009-01-01
T-slide linear actuators use gear bearing differential epicyclical transmissions (GBDETs) to directly drive a linear rack, which, in turn, performs the actuation. Conventional systems use a rotary power source in conjunction with a nut and screw to provide linear motion. Non-back-drive properties of GBDETs make the new actuator more direct and simpler. Versions of this approach will serve as a long-stroke, ultra-precision, position actuator for NASA science instruments, and as a rugged, linear actuator for NASA deployment duties. The T slide can operate effectively in the presence of side forces and torques. Versions of the actuator can perform ultra-precision positioning. A basic T-slide actuator is a long-stroke, rack-and-pinion linear actuator that, typically, consists of a T-slide, several idlers, a transmission to drive the slide (powered by an electric motor) and a housing that holds the entire assembly. The actuator is driven by gear action on its top surface, and is guided and constrained by gear-bearing idlers on its other two parallel surfaces. The geometry, implemented with gear-bearing technology, is particularly effective. An electronic motor operating through a GBDET can directly drive the T slide against large loads, as a rack and pinion linear actuator, with no break and no danger of back driving. The actuator drives the slide into position and stops. The slide holes position with power off and no brake, regardless of load. With the T slide configuration, this GBDET has an entire T-gear surface on which to operate. The GB idlers coupling the other two T slide parallel surfaces to their housing counterpart surfaces provide constraints in five degrees-of-freedom and rolling friction in the direction of actuation. Multiple GB idlers provide roller bearing strength sufficient to support efficient, rolling friction movement, even in the presence of large, resisting forces. T-slide actuators can be controlled using the combination of an off
African Journals Online (AJOL)
by considering two linear transforms of the unbiased estimator of the coefﬁcients of the multiple linear regression model. Key words/phrases: Admissibility, linear transforms, multivariate statistics, strong-and weak mean square criteria. INTRODUCTION. Improvement of estimation and prediction by introducing biased ...
Lawson, C. L.; Krogh, F. T.; Gold, S. S.; Kincaid, D. R.; Sullivan, J.; Williams, E.; Hanson, R. J.; Haskell, K.; Dongarra, J.; Moler, C. B.
1982-01-01
The Basic Linear Algebra Subprograms (BLAS) library is a collection of 38 FORTRAN-callable routines for performing basic operations of numerical linear algebra. BLAS library is portable and efficient source of basic operations for designers of programs involving linear algebriac computations. BLAS library is supplied in portable FORTRAN and Assembler code versions for IBM 370, UNIVAC 1100 and CDC 6000 series computers.
Optimal Static Range Reporting in One Dimension
DEFF Research Database (Denmark)
Alstrup, Stephen; Brodal, Gerth Stølting; Rauhe, Theis
2001-01-01
a query interval, we present an optimal data structure with linear space cost and with query time linear in the number of integers reported. This result holds in the unit cost RAM model with word size w and a standard instruction set. We also present a linear space data structure for approximate range...
Encoding pitch contours using current steering.
Luo, Xin; Landsberger, David M; Padilla, Monica; Srinivasan, Arthi G
2010-09-01
This study investigated cochlear implant (CI) users' ability to perceive pitch cues from time-varying virtual channels (VCs) to identify pitch contours. Seven CI users were tested on apical, medial, and basal electrode pairs with stimulus durations from 100 to 1000 ms. In one stimulus set, 9 pitch contours were created by steering current between the component electrodes and the VC halfway between the electrodes. Another stimulus set only contained 3 pitch contours (flat, falling, and rising). VC discrimination was also tested on the same electrodes. The total current level of dual-electrode stimuli was linearly interpolated between those of single-electrode stimuli to minimize loudness changes. The results showed that pitch contour identification (PCI) scores were similar across electrode locations, and significantly improved at longer durations. For durations longer than 300 ms, 2 subjects had nearly perfect 9-contour identification, and 5 subjects perfectly identified the 3 basic contours. Both PCI and VC discrimination varied greatly across subjects. Cumulative d(') values for VC discrimination were significantly correlated with 100-, 200-, and 500-ms PCI scores. These results verify the feasibility of encoding pitch contours using current steering, and suggest that identification of such pitch contours strongly relies on CI users' sensitivity to VCs.
High speed image acquisition system of absolute encoder
Liao, Jianxiang; Chen, Xin; Chen, Xindu; Zhang, Fangjian; Wang, Han
2017-01-01
Absolute optical encoder as a product of optical, mechanical and electronic integration has been widely used in displacement measuring fields. However, how to improve the measurement velocity and reduce the manufacturing cost of absolute optical encoder is the key problem to be solved. To improve the measurement speed, a novel absolute optical encoder image acquisition system is proposed. The proposed acquisition system includes a linear CCD sensor is applied for capturing coding pattern images, an optical magnifying system is used for enlarging the grating stripes, an analog-digital conversion(ADC) module is used for processing the CCD analogy signal, a field programmable gate array(FPGA) device and other peripherals perform driving task. An absolute position measurement experiment was set up to verify and evaluate the proposed image acquisition system. The experimental result indicates that the proposed absolute optical encoder image acquisition system has the image acquisition speed of more than 9500fp/s with well reliability and lower manufacture cost.
Index coding via linear programming
Blasiak, Anna; Lubetzky, Eyal
2010-01-01
Index Coding has received considerable attention recently motivated in part by applications such as fast video-on-demand and efficient communication in wireless networks and in part by its connection to Network Coding. The basic setting of Index Coding encodes the side-information relation, the problem input, as an undirected graph and the fundamental parameter is the broadcast rate $\\beta$, the average communication cost per bit for sufficiently long messages (i.e. the non-linear vector capacity). Recent nontrivial bounds on $\\beta$ were derived from the study of other Index Coding capacities (e.g. the scalar capacity $\\beta_1$) by Bar-Yossef et al (FOCS'06), Lubetzky and Stav (FOCS'07) and Alon et al (FOCS'08). However, these indirect bounds shed little light on the behavior of $\\beta$ and its exact value remained unknown for \\emph{any graph} where Index Coding is nontrivial. Our main contribution is a hierarchy of linear programs whose solutions trap $\\beta$ between them. This enables a direct information-...
Hagedorn, Peter
1982-01-01
Thoroughly revised and updated, the second edition of this concise text provides an engineer's view of non-linear oscillations, explaining the most important phenomena and solution methods. Non-linear descriptions are important because under certain conditions there occur large deviations from the behaviors predicted by linear differential equations. In some cases, completely new phenomena arise that are not possible in purely linear systems. The theory of non-linear oscillations thus has important applications in classical mechanics, electronics, communications, biology, and many other branches of science. In addition to many other changes, this edition has a new section on bifurcation theory, including Hopf's theorem.
Multivariate covariance generalized linear models
DEFF Research Database (Denmark)
Bonat, W. H.; Jørgensen, Bent
2016-01-01
We propose a general framework for non-normal multivariate data analysis called multivariate covariance generalized linear models, designed to handle multivariate response variables, along with a wide range of temporal and spatial correlation structures defined in terms of a covariance link...... function combined with a matrix linear predictor involving known matrices. The method is motivated by three data examples that are not easily handled by existing methods. The first example concerns multivariate count data, the second involves response variables of mixed types, combined with repeated...... measures and longitudinal structures, and the third involves a spatiotemporal analysis of rainfall data. The models take non-normality into account in the conventional way by means of a variance function, and the mean structure is modelled by means of a link function and a linear predictor. The models...
Topics in quaternion linear algebra
Rodman, Leiba
2014-01-01
Quaternions are a number system that has become increasingly useful for representing the rotations of objects in three-dimensional space and has important applications in theoretical and applied mathematics, physics, computer science, and engineering. This is the first book to provide a systematic, accessible, and self-contained exposition of quaternion linear algebra. It features previously unpublished research results with complete proofs and many open problems at various levels, as well as more than 200 exercises to facilitate use by students and instructors. Applications presented in the book include numerical ranges, invariant semidefinite subspaces, differential equations with symmetries, and matrix equations. Designed for researchers and students across a variety of disciplines, the book can be read by anyone with a background in linear algebra, rudimentary complex analysis, and some multivariable calculus. Instructors will find it useful as a complementary text for undergraduate linear algebra courses...
Molecular mechanisms for protein-encoded inheritance
Energy Technology Data Exchange (ETDEWEB)
Wiltzius, Jed J.W.; Landau, Meytal; Nelson, Rebecca; Sawaya, Michael R.; Apostol, Marcin I.; Goldschmidt, Lukasz; Soriaga, Angela B.; Cascio, Duilio; Rajashankar, Kanagalaghatta; Eisenberg, David; (Cornell); (HHMI)
2009-12-01
In prion inheritance and transmission, strains are phenotypic variants encoded by protein 'conformations'. However, it is unclear how a protein conformation can be stable enough to endure transmission between cells or organisms. Here we describe new polymorphic crystal structures of segments of prion and other amyloid proteins, which offer two structural mechanisms for the encoding of prion strains. In packing polymorphism, prion strains are encoded by alternative packing arrangements (polymorphs) of {beta}-sheets formed by the same segment of a protein; in segmental polymorphism, prion strains are encoded by distinct {beta}-sheets built from different segments of a protein. Both forms of polymorphism can produce enduring conformations capable of encoding strains. These molecular mechanisms for transfer of protein-encoded information into prion strains share features with the familiar mechanism for transfer of nucleic acid-encoded information into microbial strains, including sequence specificity and recognition by noncovalent bonds.
Engineering Genetically Encoded FRET Sensors
Lindenburg, Laurens; Merkx, Maarten
2014-01-01
Förster Resonance Energy Transfer (FRET) between two fluorescent proteins can be exploited to create fully genetically encoded and thus subcellularly targetable sensors. FRET sensors report changes in energy transfer between a donor and an acceptor fluorescent protein that occur when an attached sensor domain undergoes a change in conformation in response to ligand binding. The design of sensitive FRET sensors remains challenging as there are few generally applicable design rules and each sensor must be optimized anew. In this review we discuss various strategies that address this shortcoming, including rational design approaches that exploit self-associating fluorescent domains and the directed evolution of FRET sensors using high-throughput screening. PMID:24991940
On the validity range of piston theory
CSIR Research Space (South Africa)
Meijer, M-C
2015-06-01
Full Text Available as the analytical validity range for linear piston theory as based in potential flows. The range of validity of single-term nonlinear extensions to the linear potential equation into the transonic and hypersonic regions is treated. A brief review of the development...
Linearization of conservative nonlinear oscillators
Energy Technology Data Exchange (ETDEWEB)
Belendez, A; Alvarez, M L [Departamento de Fisica, IngenierIa de Sistemas y TeorIa de la Senal, Universidad de Alicante, Apartado 99, E-03080 Alicante (Spain); Fernandez, E; Pascual, I [Departamento de Optica, FarmacologIa y AnatomIa, Universidad de Alicante, Apartado 99, E-03080 Alicante (Spain)], E-mail: a.belendez@ua.es
2009-03-11
A linearization method of the nonlinear differential equation for conservative nonlinear oscillators is analysed and discussed. This scheme is based on the Chebyshev series expansion of the restoring force which allows us to obtain a frequency-amplitude relation which is valid not only for small but also for large amplitudes and, sometimes, for the complete range of oscillation amplitudes. Some conservative nonlinear oscillators are analysed to illustrate the usefulness and effectiveness of the technique.
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
Hitz, Benjamin C; Rowe, Laurence D; Podduturi, Nikhil R; Glick, David I; Baymuradov, Ulugbek K; Malladi, Venkat S; Chan, Esther T; Davidson, Jean M; Gabdank, Idan; Narayana, Aditi K; Onate, Kathrina C; Hilton, Jason; Ho, Marcus C; Lee, Brian T; Miyasato, Stuart R; Dreszer, Timothy R; Sloan, Cricket A; Strattan, J Seth; Tanaka, Forrest Y; Hong, Eurie L; Cherry, J Michael
2017-01-01
The Encyclopedia of DNA elements (ENCODE) project is an ongoing collaborative effort to create a comprehensive catalog of functional elements initiated shortly after the completion of the Human Genome Project. The current database exceeds 6500 experiments across more than 450 cell lines and tissues using a wide array of experimental techniques to study the chromatin structure, regulatory and transcriptional landscape of the H. sapiens and M. musculus genomes. All ENCODE experimental data, metadata, and associated computational analyses are submitted to the ENCODE Data Coordination Center (DCC) for validation, tracking, storage, unified processing, and distribution to community resources and the scientific community. As the volume of data increases, the identification and organization of experimental details becomes increasingly intricate and demands careful curation. The ENCODE DCC has created a general purpose software system, known as SnoVault, that supports metadata and file submission, a database used for metadata storage, web pages for displaying the metadata and a robust API for querying the metadata. The software is fully open-source, code and installation instructions can be found at: http://github.com/ENCODE-DCC/snovault/ (for the generic database) and http://github.com/ENCODE-DCC/encoded/ to store genomic data in the manner of ENCODE. The core database engine, SnoVault (which is completely independent of ENCODE, genomic data, or bioinformatic data) has been released as a separate Python package.
Blyth, T S
2002-01-01
Basic Linear Algebra is a text for first year students leading from concrete examples to abstract theorems, via tutorial-type exercises. More exercises (of the kind a student may expect in examination papers) are grouped at the end of each section. The book covers the most important basics of any first course on linear algebra, explaining the algebra of matrices with applications to analytic geometry, systems of linear equations, difference equations and complex numbers. Linear equations are treated via Hermite normal forms which provides a successful and concrete explanation of the notion of linear independence. Another important highlight is the connection between linear mappings and matrices leading to the change of basis theorem which opens the door to the notion of similarity. This new and revised edition features additional exercises and coverage of Cramer's rule (omitted from the first edition). However, it is the new, extra chapter on computer assistance that will be of particular interest to readers:...
Energy Technology Data Exchange (ETDEWEB)
Wiedemann, H.
1981-11-01
Since no linear colliders have been built yet it is difficult to know at what energy the linear cost scaling of linear colliders drops below the quadratic scaling of storage rings. There is, however, no doubt that a linear collider facility for a center of mass energy above say 500 GeV is significantly cheaper than an equivalent storage ring. In order to make the linear collider principle feasible at very high energies a number of problems have to be solved. There are two kinds of problems: one which is related to the feasibility of the principle and the other kind of problems is associated with minimizing the cost of constructing and operating such a facility. This lecture series describes the problems and possible solutions. Since the real test of a principle requires the construction of a prototype I will in the last chapter describe the SLC project at the Stanford Linear Accelerator Center.
Matrices and linear transformations
Cullen, Charles G
1990-01-01
""Comprehensive . . . an excellent introduction to the subject."" - Electronic Engineer's Design Magazine.This introductory textbook, aimed at sophomore- and junior-level undergraduates in mathematics, engineering, and the physical sciences, offers a smooth, in-depth treatment of linear algebra and matrix theory. The major objects of study are matrices over an arbitrary field. Contents include Matrices and Linear Systems; Vector Spaces; Determinants; Linear Transformations; Similarity: Part I and Part II; Polynomials and Polynomial Matrices; Matrix Analysis; and Numerical Methods. The first
Efficient Non Linear Loudspeakers
DEFF Research Database (Denmark)
Petersen, Bo R.; Agerkvist, Finn T.
2006-01-01
Loudspeakers have traditionally been designed to be as linear as possible. However, as techniques for compensating non linearities are emerging, it becomes possible to use other design criteria. This paper present and examines a new idea for improving the efficiency of loudspeakers at high levels...... by changing the voice coil layout. This deliberate non-linear design has the benefit that a smaller amplifier can be used, which has the benefit of reducing system cost as well as reducing power consumption....
Carr, Joseph
1996-01-01
The linear IC market is large and growing, as is the demand for well trained technicians and engineers who understand how these devices work and how to apply them. Linear Integrated Circuits provides in-depth coverage of the devices and their operation, but not at the expense of practical applications in which linear devices figure prominently. This book is written for a wide readership from FE and first degree students, to hobbyists and professionals.Chapter 1 offers a general introduction that will provide students with the foundations of linear IC technology. From chapter 2 onwa
Faraway, Julian J
2014-01-01
A Hands-On Way to Learning Data AnalysisPart of the core of statistics, linear models are used to make predictions and explain the relationship between the response and the predictors. Understanding linear models is crucial to a broader competence in the practice of statistics. Linear Models with R, Second Edition explains how to use linear models in physical science, engineering, social science, and business applications. The book incorporates several improvements that reflect how the world of R has greatly expanded since the publication of the first edition.New to the Second EditionReorganiz
Novelty's effect on memory encoding.
Rangel-Gomez, Mauricio; Janenaite, Sigita; Meeter, Martijn
2015-07-01
It is often thought that novelty benefits memory formation. However, support for this idea mostly comes from paradigms that are open to alternative explanations. In the present study we manipulated novelty in a word-learning task through task-irrelevant background images. These background images were either standard (presented repeatedly), or novel (presented only once). Two types of background images were used: Landscape pictures and fractals. EEG was also recorded during encoding. Contrary to the idea that novelty aids memory formation, memory performance was not affected by the novelty of the background. In the evoked response potentials, we found evidence of distracting effects of novelty: both the N1 and P3b components were smaller to words studied with novel backgrounds, and the amplitude of the N2b component correlated negatively with subsequent retrieval. We conclude that although evidence from other studies does suggest benefits on a longer time scale, novelty has no instantaneous benefits for learning. Copyright © 2015 Elsevier B.V. All rights reserved.
Universal dynamic goniometer for rotary encoders
Smirnov, Nikolai V.; Latyev, Svjatoslav M.; Naumova, Anastasiia I.
2017-06-01
A novel dynamic goniometer for the accuracy of rotary encoders has been developed on the base of the method of comparison with the reference encoder. The set-up of the goniometer considers all constructive and informative characteristics of measured encoders. The novel goniometer construction uses the new compensating method of instrumental errors in automatic working process. The advantages of the dynamic goniometer in combination with an optical rotary encoder at the reduction of the measuring time and a simultaneous increase of the accuracy.
Khuri, Andre I
2009-01-01
Supported by a large number of examples, this book provides a foundation in the theory of linear models and explores the developments in data analysis. It encompasses a wide variety of topics in linear models that incorporate the classical approach and other trends and modeling techniques.
Axler, Sheldon
2015-01-01
This best-selling textbook for a second course in linear algebra is aimed at undergrad math majors and graduate students. The novel approach taken here banishes determinants to the end of the book. The text focuses on the central goal of linear algebra: understanding the structure of linear operators on finite-dimensional vector spaces. The author has taken unusual care to motivate concepts and to simplify proofs. A variety of interesting exercises in each chapter helps students understand and manipulate the objects of linear algebra. The third edition contains major improvements and revisions throughout the book. More than 300 new exercises have been added since the previous edition. Many new examples have been added to illustrate the key ideas of linear algebra. New topics covered in the book include product spaces, quotient spaces, and dual spaces. Beautiful new formatting creates pages with an unusually pleasant appearance in both print and electronic versions. No prerequisites are assumed other than the ...
What physics is encoded in Maxwell's equations?
Kosyakov, B. P.
2005-08-01
We reconstruct Maxwell's equations showing that a major part of the information encoded in them is taken from topological properties of spacetime, and the residual information, divorced from geometry, which represents the physical contents of electrodynamics, %these equations, translates into four assumptions:(i) locality; (ii) linearity; %of the dynamical law; (iii) identity of the charge-source and the charge-coupling; and (iv) lack of magnetic monopoles. However, a closer inspection of symmetries peculiar to electrodynamics shows that these assumptions may have much to do with geometry. Maxwell's equations tell us that we live in a three-dimensional space with trivial (Euclidean) topology; time is a one-dimensional unidirectional and noncompact continuum; and spacetime is endowed with a light cone structure readable in the conformal invariance of electrodynamics. Our geometric feelings relate to the fact that Maxwell's equations are built in our brain, hence our space and time orientation, our visualization and imagination capabilities are ensured by perpetual instinctive processes of solving Maxwell's equations. People are usually agree in their observations of angle relations, for example, a right angle is never confused with an angle slightly different from right. By contrast, we may disagree in metric issues, say, a colour-blind person finds the light wave lengths quite different from those found by a man with normal vision. This lends support to the view that conformal invariance of Maxwell's equations is responsible for producing our notion of space. Assuming that our geometric intuition is guided by our innate realization of electrodynamical laws, some abnormal mental phenomena, such as clairvoyance, may have a rational explanation.
Encoding and Decoding Models in Cognitive Electrophysiology
Directory of Open Access Journals (Sweden)
Christopher R. Holdgraf
2017-09-01
Full Text Available Cognitive neuroscience has seen rapid growth in the size and complexity of data recorded from the human brain as well as in the computational tools available to analyze this data. This data explosion has resulted in an increased use of multivariate, model-based methods for asking neuroscience questions, allowing scientists to investigate multiple hypotheses with a single dataset, to use complex, time-varying stimuli, and to study the human brain under more naturalistic conditions. These tools come in the form of “Encoding” models, in which stimulus features are used to model brain activity, and “Decoding” models, in which neural features are used to generated a stimulus output. Here we review the current state of encoding and decoding models in cognitive electrophysiology and provide a practical guide toward conducting experiments and analyses in this emerging field. Our examples focus on using linear models in the study of human language and audition. We show how to calculate auditory receptive fields from natural sounds as well as how to decode neural recordings to predict speech. The paper aims to be a useful tutorial to these approaches, and a practical introduction to using machine learning and applied statistics to build models of neural activity. The data analytic approaches we discuss may also be applied to other sensory modalities, motor systems, and cognitive systems, and we cover some examples in these areas. In addition, a collection of Jupyter notebooks is publicly available as a complement to the material covered in this paper, providing code examples and tutorials for predictive modeling in python. The aim is to provide a practical understanding of predictive modeling of human brain data and to propose best-practices in conducting these analyses.
Encoding and Decoding Models in Cognitive Electrophysiology
Holdgraf, Christopher R.; Rieger, Jochem W.; Micheli, Cristiano; Martin, Stephanie; Knight, Robert T.; Theunissen, Frederic E.
2017-01-01
Cognitive neuroscience has seen rapid growth in the size and complexity of data recorded from the human brain as well as in the computational tools available to analyze this data. This data explosion has resulted in an increased use of multivariate, model-based methods for asking neuroscience questions, allowing scientists to investigate multiple hypotheses with a single dataset, to use complex, time-varying stimuli, and to study the human brain under more naturalistic conditions. These tools come in the form of “Encoding” models, in which stimulus features are used to model brain activity, and “Decoding” models, in which neural features are used to generated a stimulus output. Here we review the current state of encoding and decoding models in cognitive electrophysiology and provide a practical guide toward conducting experiments and analyses in this emerging field. Our examples focus on using linear models in the study of human language and audition. We show how to calculate auditory receptive fields from natural sounds as well as how to decode neural recordings to predict speech. The paper aims to be a useful tutorial to these approaches, and a practical introduction to using machine learning and applied statistics to build models of neural activity. The data analytic approaches we discuss may also be applied to other sensory modalities, motor systems, and cognitive systems, and we cover some examples in these areas. In addition, a collection of Jupyter notebooks is publicly available as a complement to the material covered in this paper, providing code examples and tutorials for predictive modeling in python. The aim is to provide a practical understanding of predictive modeling of human brain data and to propose best-practices in conducting these analyses. PMID:29018336
A new approach of binary addition and subtraction by non-linear ...
Indian Academy of Sciences (India)
optical domain by exploitation of proper non-linear material-based switching technique. In this communication, the authors extend this technique for both adder and subtractor accommodating the spatial input encoding system.
2010-10-01
... must additionally provide the following minimum specifications: (1) Encoder programming. Access to encoder programming shall be protected by a lock or other security measures and be configured so that... fundamental frequencies of 853 and 960 Hz and not vary over ±0.5 Hz. (ii) Harmonic Distortion. The total...
Effects of diazepam on encoding processes
Gorissen, M.; Eling, P.; Luijtelaar, G. van; Coenen, A.
1995-01-01
Benzodiazepines are known to induce amnesic effects. To specify these effects more precisely, 40 healthy volunteers were given 15 mg diazepam or placebo. Effects on a chain of encoding operations were investigated: activation of memory representations, spreading of activation, semantic encoding and
Regularity-Preserving but not Reflecting Encodings
Endrullis, J.; Grabmayer, C.A.; Hendriks, R.D.A.; Palamidessi, C.
2015-01-01
Encodings, that is, injective functions from words to words, have been studied extensively in several settings. In computability theory the notion of encoding is crucial for defining computability on arbitrary domains, as well as for comparing the power of models of computation. In language theory
Cellular encoding for interactive evolutionary robotics
F.C. Gruau; K. Quatramaran
1996-01-01
textabstractThis work reports experiments in interactive evolutionary robotics. The goal is to evolve an Artificial Neural Network (ANN) to control the locomotion of an 8-legged robot. The ANNs are encoded using a cellular developmental process called cellular encoding. In a previous work similar
Encoding information using Laguerre Gaussian modes
Trichili, Abderrahmen; Dudley, Angela; Ben Salem, Amine; Ndagano, Bienvenu; Zghal, Mourad; Forbes, Andrew
2015-08-01
We experimentally demonstrate an information encoding protocol using the two degrees of freedom of Laguerre Gaussian modes having different radial and azimuthal components. A novel method, based on digital holography, for information encoding and decoding using different data transmission scenarios is presented. The effects of the atmospheric turbulence introduced in free space communication is discussed as well.
Linearization Technologies for Broadband Radio-Over-Fiber Transmission Systems
Directory of Open Access Journals (Sweden)
Xiupu Zhang
2014-11-01
Full Text Available Linearization technologies that can be used for linearizing RoF transmission are reviewed. Three main linearization methods, i.e. electrical analog linearization, optical linearization, and electrical digital linearization are presented and compared. Analog linearization can be achieved using analog predistortion circuits, and can be used for suppression of odd order nonlinear distortion components, such as third and fifth order. Optical linearization includes mixed-polarization, dual-wavelength, optical channelization and the others, implemented in optical domain, to suppress both even and odd order nonlinear distortion components, such as second and third order. Digital predistortion has been a widely used linearization method for RF power amplifiers. However, digital linearization that requires analog to digital converter is severely limited to hundreds of MHz bandwidth. Instead, analog and optical linearization provide broadband linearization with up to tens of GHz. Therefore, for broadband radio over fiber transmission that can be used for future broadband cloud radio access networks, analog and optical linearization are more appropriate than digital linearization. Generally speaking, both analog and optical linearization are able to improve spur-free dynamic range greater than 10 dB over tens of GHz. In order for current digital linearization to be used for broadband radio over fiber transmission, the reduced linearization complexity and increased linearization bandwidth are required. Moreover, some digital linearization methods in which the complexity can be reduced, such as Hammerstein type, may be more promising and require further investigation.
A sparse embedding and least variance encoding approach to hashing.
Zhu, Xiaofeng; Zhang, Lei; Huang, Zi
2014-09-01
Hashing is becoming increasingly important in large-scale image retrieval for fast approximate similarity search and efficient data storage. Many popular hashing methods aim to preserve the kNN graph of high dimensional data points in the low dimensional manifold space, which is, however, difficult to achieve when the number of samples is big. In this paper, we propose an effective and efficient hashing approach by sparsely embedding a sample in the training sample space and encoding the sparse embedding vector over a learned dictionary. To this end, we partition the sample space into clusters via a linear spectral clustering method, and then represent each sample as a sparse vector of normalized probabilities that it falls into its several closest clusters. This actually embeds each sample sparsely in the sample space. The sparse embedding vector is employed as the feature of each sample for hashing. We then propose a least variance encoding model, which learns a dictionary to encode the sparse embedding feature, and consequently binarize the coding coefficients as the hash codes. The dictionary and the binarization threshold are jointly optimized in our model. Experimental results on benchmark data sets demonstrated the effectiveness of the proposed approach in comparison with state-of-the-art methods.
Weisberg, Sanford
2013-01-01
Praise for the Third Edition ""...this is an excellent book which could easily be used as a course text...""-International Statistical Institute The Fourth Edition of Applied Linear Regression provides a thorough update of the basic theory and methodology of linear regression modeling. Demonstrating the practical applications of linear regression analysis techniques, the Fourth Edition uses interesting, real-world exercises and examples. Stressing central concepts such as model building, understanding parameters, assessing fit and reliability, and drawing conclusions, the new edition illus
Schneider, Hans
1989-01-01
Linear algebra is one of the central disciplines in mathematics. A student of pure mathematics must know linear algebra if he is to continue with modern algebra or functional analysis. Much of the mathematics now taught to engineers and physicists requires it.This well-known and highly regarded text makes the subject accessible to undergraduates with little mathematical experience. Written mainly for students in physics, engineering, economics, and other fields outside mathematics, the book gives the theory of matrices and applications to systems of linear equations, as well as many related t
Amir-Moez, A R; Sneddon, I N
1962-01-01
Elements of Linear Space is a detailed treatment of the elements of linear spaces, including real spaces with no more than three dimensions and complex n-dimensional spaces. The geometry of conic sections and quadric surfaces is considered, along with algebraic structures, especially vector spaces and transformations. Problems drawn from various branches of geometry are given.Comprised of 12 chapters, this volume begins with an introduction to real Euclidean space, followed by a discussion on linear transformations and matrices. The addition and multiplication of transformations and matrices a
Abian, Alexander
1973-01-01
Linear Associative Algebras focuses on finite dimensional linear associative algebras and the Wedderburn structure theorems.The publication first elaborates on semigroups and groups, rings and fields, direct sum and tensor product of rings, and polynomial and matrix rings. The text then ponders on vector spaces, including finite dimensional vector spaces and matrix representation of vectors. The book takes a look at linear associative algebras, as well as the idempotent and nilpotent elements of an algebra, ideals of an algebra, total matrix algebras and the canonical forms of matrices, matrix
Linearized 3D gravity with dust
Husain, Viqar; Ziprick, Jonathan
2016-01-01
Three-dimensional gravity coupled to pressureless dust is a field theory with one local degree of freedom. In the canonical framework, the dust-time gauge encodes this physical degree of freedom as a metric function. We find that the dynamics of this field, up to spatial diffeomorphism flow, is independent of spatial derivatives and is therefore ultralocal. We also derive the linearized equations about flat spacetime, and show that the physical degree of freedom may be viewed as either a traceless or a transverse mode.
Self-perpetuating development of encoding biases.
Lewicki, P; Hill, T; Sasaki, I
1989-12-01
The process of encoding new information involves the imposition of preexisting interpretive categories on newly encountered stimuli, even if the categories do not match perfectly those stimuli. We hypothesized that such encoding of stimuli as supportive of preexisting encoding dispositions may become a source of a perceiver's subjective experiences that support these dispositions. Through this nonconsciously operating mechanism, encoding rules may gradually develop in a self-perpetuating manner, even in the absence of any objectively supportive evidence. Results demonstrated this self-perpetuating process in three studies involving different stimulus materials and experimental tasks (matrix-scanning paradigm and two "intuitive judgment" tasks). The self-perpetuating development of encoding biases is discussed as one of the elementary mechanisms involved in the development of interpretive categories and other individually differentiated cognitive dispositions.
The Arabic Diatessaron Project: Digitalizing, Encoding, Lemmatization
Directory of Open Access Journals (Sweden)
Giuliano Lancioni
2016-04-01
Full Text Available The Arabic Diatessaron Project (henceforth ADP is an international research project in Digital Humanities that aims to collect, digitalise and encode all known manuscripts of the Arabic Diatessaron (henceforth AD, a text that has been relatively neglected in scholarly research. ADP’s final goal is to provide a number of tools that can enable scholars to effectively query, compare and investigate all known variants of the text that will be encoded as far as possible in compliance with the Text Encoding Initiative (TEI guidelines. The paper addresses a number of issues involved in the process of digitalising manuscripts included in the two existing editions (Ciasca 1888 and Marmardji 1935, adding variants in unedited manuscripts, encoding and lemmatising the text. Issues involved in the design of the ADP include presentation of variants, choice of the standard text, applicability of TEI guidelines, automatic translation between different encodings, cross-edition concordances and principles of lemmatisation.
Comparative genomics of Shiga toxin encoding bacteriophages
Directory of Open Access Journals (Sweden)
Smith Darren L
2012-07-01
Full Text Available Abstract Background Stx bacteriophages are responsible for driving the dissemination of Stx toxin genes (stx across their bacterial host range. Lysogens carrying Stx phages can cause severe, life-threatening disease and Stx toxin is an integral virulence factor. The Stx-bacteriophage vB_EcoP-24B, commonly referred to as Ф24B, is capable of multiply infecting a single bacterial host cell at a high frequency, with secondary infection increasing the rate at which subsequent bacteriophage infections can occur. This is biologically unusual, therefore determining the genomic content and context of Ф24B compared to other lambdoid Stx phages is important to understanding the factors controlling this phenomenon and determining whether they occur in other Stx phages. Results The genome of the Stx2 encoding phage, Ф24B was sequenced and annotated. The genomic organisation and general features are similar to other sequenced Stx bacteriophages induced from Enterohaemorrhagic Escherichia coli (EHEC, however Ф24B possesses significant regions of heterogeneity, with implications for phage biology and behaviour. The Ф24B genome was compared to other sequenced Stx phages and the archetypal lambdoid phage, lambda, using the Circos genome comparison tool and a PCR-based multi-loci comparison system. Conclusions The data support the hypothesis that Stx phages are mosaic, and recombination events between the host, phages and their remnants within the same infected bacterial cell will continue to drive the evolution of Stx phage variants and the subsequent dissemination of shigatoxigenic potential.
Extraordinarily Adaptive Properties of the Genetically Encoded Amino Acids
Ilardo, Melissa; Meringer, Markus; Freeland, Stephen; Rasulev, Bakhtiyor; Cleaves II, H. James
2015-01-01
Using novel advances in computational chemistry, we demonstrate that the set of 20 genetically encoded amino acids, used nearly universally to construct all coded terrestrial proteins, has been highly influenced by natural selection. We defined an adaptive set of amino acids as one whose members thoroughly cover relevant physico-chemical properties, or “chemistry space.” Using this metric, we compared the encoded amino acid alphabet to random sets of amino acids. These random sets were drawn from a computationally generated compound library containing 1913 alternative amino acids that lie within the molecular weight range of the encoded amino acids. Sets that cover chemistry space better than the genetically encoded alphabet are extremely rare and energetically costly. Further analysis of more adaptive sets reveals common features and anomalies, and we explore their implications for synthetic biology. We present these computations as evidence that the set of 20 amino acids found within the standard genetic code is the result of considerable natural selection. The amino acids used for constructing coded proteins may represent a largely global optimum, such that any aqueous biochemistry would use a very similar set. PMID:25802223
Compact hyperspectral image sensor based on a novel hyperspectral encoder
Hegyi, Alex N.; Martini, Joerg
2015-06-01
A novel hyperspectral imaging sensor is demonstrated that can enable breakthrough applications of hyperspectral imaging in domains not previously accessible. Our technology consists of a planar hyperspectral encoder combined with a traditional monochrome image sensor. The encoder adds negligibly to the sensor's overall size, weight, power requirement, and cost (SWaP-C); therefore, the new imager can be incorporated wherever image sensors are currently used, such as in cell phones and other consumer electronics. In analogy to Fourier spectroscopy, the technique maintains a high optical throughput because narrow-band spectral filters are unnecessary. Unlike conventional Fourier techniques that rely on Michelson interferometry, our hyperspectral encoder is robust to vibration and amenable to planar integration. The device can be viewed within a computational optics paradigm: the hardware is uncomplicated and serves to increase the information content of the acquired data, and the complexity of the system, that is, the decoding of the spectral information, is shifted to computation. Consequently, system tradeoffs, for example, between spectral resolution and imaging speed or spatial resolution, are selectable in software. Our prototype demonstration of the hyperspectral imager is based on a commercially-available silicon CCD. The prototype encoder was inserted within the camera's ~1 cu. in. housing. The prototype can image about 49 independent spectral bands distributed from 350 nm to 1250 nm, but the technology may be extendable over a wavelength range from ~300 nm to ~10 microns, with suitable choice of detector.
A model for visual memory encoding.
Directory of Open Access Journals (Sweden)
Rodolphe Nenert
Full Text Available Memory encoding engages multiple concurrent and sequential processes. While the individual processes involved in successful encoding have been examined in many studies, a sequence of events and the importance of modules associated with memory encoding has not been established. For this reason, we sought to perform a comprehensive examination of the network for memory encoding using data driven methods and to determine the directionality of the information flow in order to build a viable model of visual memory encoding. Forty healthy controls ages 19-59 performed a visual scene encoding task. FMRI data were preprocessed using SPM8 and then processed using independent component analysis (ICA with the reliability of the identified components confirmed using ICASSO as implemented in GIFT. The directionality of the information flow was examined using Granger causality analyses (GCA. All participants performed the fMRI task well above the chance level (>90% correct on both active and control conditions and the post-fMRI testing recall revealed correct memory encoding at 86.33 ± 5.83%. ICA identified involvement of components of five different networks in the process of memory encoding, and the GCA allowed for the directionality of the information flow to be assessed, from visual cortex via ventral stream to the attention network and then to the default mode network (DMN. Two additional networks involved in this process were the cerebellar and the auditory-insular network. This study provides evidence that successful visual memory encoding is dependent on multiple modules that are part of other networks that are only indirectly related to the main process. This model may help to identify the node(s of the network that are affected by a specific disease processes and explain the presence of memory encoding difficulties in patients in whom focal or global network dysfunction exists.
A model for visual memory encoding.
Nenert, Rodolphe; Allendorfer, Jane B; Szaflarski, Jerzy P
2014-01-01
Memory encoding engages multiple concurrent and sequential processes. While the individual processes involved in successful encoding have been examined in many studies, a sequence of events and the importance of modules associated with memory encoding has not been established. For this reason, we sought to perform a comprehensive examination of the network for memory encoding using data driven methods and to determine the directionality of the information flow in order to build a viable model of visual memory encoding. Forty healthy controls ages 19-59 performed a visual scene encoding task. FMRI data were preprocessed using SPM8 and then processed using independent component analysis (ICA) with the reliability of the identified components confirmed using ICASSO as implemented in GIFT. The directionality of the information flow was examined using Granger causality analyses (GCA). All participants performed the fMRI task well above the chance level (>90% correct on both active and control conditions) and the post-fMRI testing recall revealed correct memory encoding at 86.33 ± 5.83%. ICA identified involvement of components of five different networks in the process of memory encoding, and the GCA allowed for the directionality of the information flow to be assessed, from visual cortex via ventral stream to the attention network and then to the default mode network (DMN). Two additional networks involved in this process were the cerebellar and the auditory-insular network. This study provides evidence that successful visual memory encoding is dependent on multiple modules that are part of other networks that are only indirectly related to the main process. This model may help to identify the node(s) of the network that are affected by a specific disease processes and explain the presence of memory encoding difficulties in patients in whom focal or global network dysfunction exists.
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DEFF Research Database (Denmark)
Høskuldsson, Agnar
1996-01-01
Determination of the proper dimension of a given linear model is one of the most important tasks in the applied modeling work. We consider here eight criteria that can be used to determine the dimension of the model, or equivalently, the number of components to use in the model. Four...... the basic problems in determining the dimension of linear models. Then each of the eight measures are treated. The results are illustrated by examples....
Multi-DOF Incremental Optical Encoder with Laser Wavelength Compensation
Directory of Open Access Journals (Sweden)
Cha'o-Kuang Chen
2013-09-01
Full Text Available This study used a reflective diffraction grating as the medium to develop a multi-DOF incremental optical encoder for motion stage. The optical encoder can measure three angular displacements, roll, yaw and pitch of the motion stage simultaneously, as well as the horizontal straightness and linear displacement, summed to five DOF errors of motion stage by only using the positive and negative first-order diffracted light. The grating diffraction theory, Doppler effect, and optical interference technique were used. Two quadrant photodetectors were used to measure the changes in three-dimensional space of diffraction direction of diffracted light, in order to construct a multi-DOF incremental optical encoder. Considering the working stability of a laser diode and preventing the influence of the zeroth-order diffracted light returning to the laser diode, an additional optical isolation system was designed and a wavelength variation monitoring module was created. The compensation for the light source wavelength variation could be 0.001 nm. The multi-DOF verification results showed that the roll error is ±0.7/60 arcsec, the standard deviation is 0.025 arcsec; the yaw error is ±0.7/30 arcsec, the standard deviation is 0.05 arcsec; the pitch error is ±0.8/90 arcsec, the standard deviation is 0.18 arcsec, the horizontal straightness error is ±0.5/250 μm, the standard deviation is 0.05 μm and the linear displacement error is ±1/20000 μm, the standard deviation is 12 nm.
Polarization states encoded by phase modulation for high bit rate quantum key distribution
Liu, Xiaobao; Tang, Zhilie; Liao, Changjun; Lu, Yiqun; Zhao, Feng; Liu, Songhao
2006-10-01
We present implementation of quantum cryptography with polarization code by wave-guide type phase modulator. At four different low input voltages of the phase modulator, coder encodes pulses into four different polarization states, 45°, 135° linearly polarized or right, left circle polarized, while the decoder serves as the complementary polarizers.
Neo-Fuzzy Encoder and Its Adaptive Learning for Big Data Processing
Directory of Open Access Journals (Sweden)
Bodyanskiy Yevgeniy
2017-12-01
Full Text Available In the paper a two-layer encoder is proposed. The nodes of encoder under consideration are neo-fuzzy neurons, which are characterised by high speed of learning process and effective approximation properties. The proposed architecture of neo-fuzzy encoder has a two-layer bottle neck” structure and its learning algorithm is based on error backpropagation. The learning algorithm is characterised by a high rate of convergence because the output signals of encoder’s nodes (neo-fuzzy neurons are linearly dependent on the tuning parameters. The proposed learning algorithm can tune both the synaptic weights and centres of membership functions. Thus, in the paper the hybrid neo-fuzzy system-encoder is proposed that has essential advantages over conventional neurocompressors.
Magnetic resonance imaging with nonlinear gradient fields signal encoding and image reconstruction
Schultz, Gerrit
2013-01-01
Within the past few decades magnetic resonance imaging has become one of the most important imaging modalities in medicine. For a reliable diagnosis of pathologies further technological improvements are of primary importance. This text deals with a radically new approach of image encoding: The fundamental principle of gradient linearity is challenged by investigating the possibilities of acquiring anatomical images with the help of nonlinear gradient fields. Besides a thorough theoretical analysis with a focus on signal encoding and image reconstruction, initial hardware implementations are tested using phantom as well as in-vivo measurements. Several applications are presented that give an impression about the implications that this technological advancement may have for future medical diagnostics. Contents n Image Reconstruction in MRI n Nonlinear Gradient Encoding: PatLoc Imaging n Presentation of Initial Hardware Designs n Basics of Signal Encoding and Image Reconstruction in PatLoc Imaging n ...
Encoding of coordination complexes with XML.
Vinoth, P; Sankar, P
2017-09-01
An in-silico system to encode structure, bonding and properties of coordination complexes is developed. The encoding is achieved through a semantic XML markup frame. Composition of the coordination complexes is captured in terms of central atom and ligands. Structural information of central atom is detailed in terms of electron status of valence electron orbitals. The ligands are encoded with specific reference to the electron environment of ligand centre atoms. Behaviour of ligands to form low or high spin complexes is accomplished by assigning a Ligand Centre Value to every ligand based on the electronic environment of ligand centre atom. Chemical ontologies are used for categorization purpose and to control different hybridization schemes. Complexes formed by the central atoms of transition metal, non-transition elements belonging to s-block, p-block and f-block are encoded with a generic encoding platform. Complexes of homoleptic, heteroleptic and bridged types are also covered by this encoding system. Utility of the encoded system to predict redox electron transfer reaction in the coordination complexes is demonstrated with a simple application. Copyright © 2017 Elsevier Inc. All rights reserved.
Force encoding in muscle spindles during stretch of passive muscle.
Blum, Kyle P; Lamotte D'Incamps, Boris; Zytnicki, Daniel; Ting, Lena H
2017-09-01
Muscle spindle proprioceptive receptors play a primary role in encoding the effects of external mechanical perturbations to the body. During externally-imposed stretches of passive, i.e. electrically-quiescent, muscles, the instantaneous firing rates (IFRs) of muscle spindles are associated with characteristics of stretch such as length and velocity. However, even in passive muscle, there are history-dependent transients of muscle spindle firing that are not uniquely related to muscle length and velocity, nor reproduced by current muscle spindle models. These include acceleration-dependent initial bursts, increased dynamic response to stretch velocity if a muscle has been isometric, and rate relaxation, i.e., a decrease in tonic IFR when a muscle is held at a constant length after being stretched. We collected muscle spindle spike trains across a variety of muscle stretch kinematic conditions, including systematic changes in peak length, velocity, and acceleration. We demonstrate that muscle spindle primary afferents in passive muscle fire in direct relationship to muscle force-related variables, rather than length-related variables. Linear combinations of whole muscle-tendon force and the first time derivative of force (dF/dt) predict the entire time course of transient IFRs in muscle spindle Ia afferents during stretch (i.e., lengthening) of passive muscle, including the initial burst, the dynamic response to lengthening, and rate relaxation following lengthening. Similar to acceleration scaling found previously in postural responses to perturbations, initial burst amplitude scaled equally well to initial stretch acceleration or dF/dt, though later transients were only described by dF/dt. The transient increase in dF/dt at the onset of lengthening reflects muscle short-range stiffness due to cross-bridge dynamics. Our work demonstrates a critical role of muscle cross-bridge dynamics in history-dependent muscle spindle IFRs in passive muscle lengthening conditions
Physics at the linear collider
Moortgat-Pick, G.; Baer, H.; Battaglia, M.; Belanger, G.; Fujii, K.; Kalinowski, J.; Heinemeyer, S.; Kiyo, Y.; Olive, K.; Simon, F.; Uwer, P.; Wackeroth, D.; Zerwas, P. M.; Arbey, A.; Asano, M.; Bagger, J.; Bechtle, P.; Bharucha, A.; Brau, J.; Brümmer, F.; Choi, S. Y.; Denner, A.; Desch, K.; Dittmaier, S.; Ellwanger, U.; Englert, C.; Freitas, A.; Ginzburg, I.; Godfrey, S.; Greiner, N.; Grojean, C.; Grünewald, M.; Heisig, J.; Höcker, A.; Kanemura, S.; Kawagoe, K.; Kogler, R.; Krawczyk, M.; Kronfeld, A. S.; Kroseberg, J.; Liebler, S.; List, J.; Mahmoudi, F.; Mambrini, Y.; Matsumoto, S.; Mnich, J.; Mönig, K.; Mühlleitner, M. M.; Pöschl, R.; Porod, W.; Porto, S.; Rolbiecki, K.; Schmitt, M.; Serpico, P.; Stanitzki, M.; Stål, O.; Stefaniak, T.; Stöckinger, D.; Weiglein, G.; Wilson, G. W.; Zeune, L.; Moortgat, F.; Xella, S.; Bagger, J.; Brau, J.; Ellis, J.; Kawagoe, K.; Komamiya, S.; Kronfeld, A. S.; Mnich, J.; Peskin, M.; Schlatter, D.; Wagner, A.; Yamamoto, H.
2015-08-01
A comprehensive review of physics at an linear collider in the energy range of GeV-3 TeV is presented in view of recent and expected LHC results, experiments from low-energy as well as astroparticle physics. The report focusses in particular on Higgs-boson, top-quark and electroweak precision physics, but also discusses several models of beyond the standard model physics such as supersymmetry, little Higgs models and extra gauge bosons. The connection to cosmology has been analysed as well.
Blyth, T S
2002-01-01
Most of the introductory courses on linear algebra develop the basic theory of finite dimensional vector spaces, and in so doing relate the notion of a linear mapping to that of a matrix. Generally speaking, such courses culminate in the diagonalisation of certain matrices and the application of this process to various situations. Such is the case, for example, in our previous SUMS volume Basic Linear Algebra. The present text is a continuation of that volume, and has the objective of introducing the reader to more advanced properties of vector spaces and linear mappings, and consequently of matrices. For readers who are not familiar with the contents of Basic Linear Algebra we provide an introductory chapter that consists of a compact summary of the prerequisites for the present volume. In order to consolidate the student's understanding we have included a large num ber of illustrative and worked examples, as well as many exercises that are strategi cally placed throughout the text. Solutions to the ex...
Multivariate generalized linear mixed models using R
Berridge, Damon Mark
2011-01-01
Multivariate Generalized Linear Mixed Models Using R presents robust and methodologically sound models for analyzing large and complex data sets, enabling readers to answer increasingly complex research questions. The book applies the principles of modeling to longitudinal data from panel and related studies via the Sabre software package in R. A Unified Framework for a Broad Class of Models The authors first discuss members of the family of generalized linear models, gradually adding complexity to the modeling framework by incorporating random effects. After reviewing the generalized linear model notation, they illustrate a range of random effects models, including three-level, multivariate, endpoint, event history, and state dependence models. They estimate the multivariate generalized linear mixed models (MGLMMs) using either standard or adaptive Gaussian quadrature. The authors also compare two-level fixed and random effects linear models. The appendices contain additional information on quadrature, model...
Linear programming using Matlab
Ploskas, Nikolaos
2017-01-01
This book offers a theoretical and computational presentation of a variety of linear programming algorithms and methods with an emphasis on the revised simplex method and its components. A theoretical background and mathematical formulation is included for each algorithm as well as comprehensive numerical examples and corresponding MATLAB® code. The MATLAB® implementations presented in this book are sophisticated and allow users to find solutions to large-scale benchmark linear programs. Each algorithm is followed by a computational study on benchmark problems that analyze the computational behavior of the presented algorithms. As a solid companion to existing algorithmic-specific literature, this book will be useful to researchers, scientists, mathematical programmers, and students with a basic knowledge of linear algebra and calculus. The clear presentation enables the reader to understand and utilize all components of simplex-type methods, such as presolve techniques, scaling techniques, pivoting ru...
Banach, S
1987-01-01
This classic work by the late Stefan Banach has been translated into English so as to reach a yet wider audience. It contains the basics of the algebra of operators, concentrating on the study of linear operators, which corresponds to that of the linear forms a1x1 + a2x2 + ... + anxn of algebra.The book gathers results concerning linear operators defined in general spaces of a certain kind, principally in Banach spaces, examples of which are: the space of continuous functions, that of the pth-power-summable functions, Hilbert space, etc. The general theorems are interpreted in various mathematical areas, such as group theory, differential equations, integral equations, equations with infinitely many unknowns, functions of a real variable, summation methods and orthogonal series.A new fifty-page section (``Some Aspects of the Present Theory of Banach Spaces'''') complements this important monograph.
Encoding information using laguerre gaussian modes
CSIR Research Space (South Africa)
Trichili, A
2015-08-01
Full Text Available The authors experimentally demonstrate an information encoding protocol using the two degrees of freedom of Laguerre Gaussian modes having different radial and azimuthal components. A novel method, based on digital holography, for information...
Gamma oscillatory amplitude encodes stimulus intensity in primary somatosensory cortex
Directory of Open Access Journals (Sweden)
Holly Elizabeth Rossiter
2013-07-01
Full Text Available Gamma oscillations have previously been linked to pain perception and it has been hypothesised that they may have a potential role in encoding pain intensity. Stimulus response experiments have reported an increase in activity in the primary somatosensory cortex (SI with increasing stimulus intensity, but the specific role of oscillatory dynamics in this change in activation remains unclear. In this study, Magnetoencephalography (MEG was used to investigate the changes in cortical oscillations during 4 different intensities of a train of electrical stimuli to the right index finger, ranging from low sensation to strong pain. In those participants showing changes in evoked oscillatory gamma in SI during stimulation, the strength of the gamma power was found to increase with increasing stimulus intensity at both pain and sub-pain thresholds. These results suggest that evoked gamma oscillations in SI are not specific to pain but may have a role in encoding somatosensory stimulus intensity.
A Novel Audio Cryptosystem Using Chaotic Maps and DNA Encoding
Directory of Open Access Journals (Sweden)
S. J. Sheela
2017-01-01
Full Text Available Chaotic maps have good potential in security applications due to their inherent characteristics relevant to cryptography. This paper introduces a new audio cryptosystem based on chaotic maps, hybrid chaotic shift transform (HCST, and deoxyribonucleic acid (DNA encoding rules. The scheme uses chaotic maps such as two-dimensional modified Henon map (2D-MHM and standard map. The 2D-MHM which has sophisticated chaotic behavior for an extensive range of control parameters is used to perform HCST. DNA encoding technology is used as an auxiliary tool which enhances the security of the cryptosystem. The performance of the algorithm is evaluated for various speech signals using different encryption/decryption quality metrics. The simulation and comparison results show that the algorithm can achieve good encryption results and is able to resist several cryptographic attacks. The various types of analysis revealed that the algorithm is suitable for narrow band radio communication and real-time speech encryption applications.
Linear Logical Voting Protocols
DEFF Research Database (Denmark)
DeYoung, Henry; Schürmann, Carsten
2012-01-01
Current approaches to electronic implementations of voting protocols involve translating legal text to source code of an imperative programming language. Because the gap between legal text and source code is very large, it is difficult to trust that the program meets its legal specification....... In response, we promote linear logic as a high-level language for both specifying and implementing voting protocols. Our linear logical specifications of the single-winner first-past-the-post (SW- FPTP) and single transferable vote (STV) protocols demonstrate that this approach leads to concise...
Hogben, Leslie
2013-01-01
With a substantial amount of new material, the Handbook of Linear Algebra, Second Edition provides comprehensive coverage of linear algebra concepts, applications, and computational software packages in an easy-to-use format. It guides you from the very elementary aspects of the subject to the frontiers of current research. Along with revisions and updates throughout, the second edition of this bestseller includes 20 new chapters.New to the Second EditionSeparate chapters on Schur complements, additional types of canonical forms, tensors, matrix polynomials, matrix equations, special types of
Linear Algebra Thoroughly Explained
Vujičić, Milan
2008-01-01
Linear Algebra Thoroughly Explained provides a comprehensive introduction to the subject suitable for adoption as a self-contained text for courses at undergraduate and postgraduate level. The clear and comprehensive presentation of the basic theory is illustrated throughout with an abundance of worked examples. The book is written for teachers and students of linear algebra at all levels and across mathematics and the applied sciences, particularly physics and engineering. It will also be an invaluable addition to research libraries as a comprehensive resource book for the subject.
Linearly Adjustable International Portfolios
Fonseca, R. J.; Kuhn, D.; Rustem, B.
2010-09-01
We present an approach to multi-stage international portfolio optimization based on the imposition of a linear structure on the recourse decisions. Multiperiod decision problems are traditionally formulated as stochastic programs. Scenario tree based solutions however can become intractable as the number of stages increases. By restricting the space of decision policies to linear rules, we obtain a conservative tractable approximation to the original problem. Local asset prices and foreign exchange rates are modelled separately, which allows for a direct measure of their impact on the final portfolio value.
Reading Neural Encodings using Phase Space Methods
Abarbanel, Henry D. I.; Tumer, Evren C.
2003-01-01
Environmental signals sensed by nervous systems are often represented in spike trains carried from sensory neurons to higher neural functions where decisions and functional actions occur. Information about the environmental stimulus is contained (encoded) in the train of spikes. We show how to "read" the encoding using state space methods of nonlinear dynamics. We create a mapping from spike signals which are output from the neural processing system back to an estimate of the analog input sig...
Mirzaian, M; Wisse, P; Ferraz, M J; Marques, A R A; Gaspar, P; Oussoren, S V; Kytidou, K; Codée, J D C; van der Marel, G; Overkleeft, H S; Aerts, J M
2017-03-01
Free sphingoid bases (lysosphingolipids) of primary storage sphingolipids are increased in tissues and plasma of several sphingolipidoses. As shown earlier by us, sphingoid bases can be accurately quantified using UPLC-ESI-MS/MS, particularly in combination with identical 13C-encoded internal standards. The feasibility of simultaneous quantitation of sphingoid bases in plasma specimens spiked with a mixture of such standards is here described. The sensitivity and linearity of detection is excellent for all examined sphingoid bases (sphingosine, sphinganine, hexosyl-sphingosine (glucosylsphingosine), hexosyl2-sphingosine (lactosylsphingosine), hexosyl3-sphingosine (globotriaosylsphingosine), phosphorylcholine-sphingosine) in the relevant concentration range and the measurements show very acceptable intra- and inter-assay variation (glucosylsphingosine in GD and FD patients. The same approach can be also applied to measure sphingolipids in the same sample. Following extraction of sphingolipids from the same sample these can be converted to sphingoid bases by microwave exposure and subsequently quantified using 13C-encoded internal standards. Copyright © 2017 Elsevier B.V. All rights reserved.
Dobbs, David E.
2013-01-01
A direct method is given for solving first-order linear recurrences with constant coefficients. The limiting value of that solution is studied as "n to infinity." This classroom note could serve as enrichment material for the typical introductory course on discrete mathematics that follows a calculus course.
Linear Classification Functions.
Huberty, Carl J.; Smith, Jerry D.
Linear classification functions (LCFs) arise in a predictive discriminant analysis for the purpose of classifying experimental units into criterion groups. The relative contribution of the response variables to classification accuracy may be based on LCF-variable correlations for each group. It is proved that, if the raw response measures are…
Linear Projective Program Syntax
Bergstra, J.A.; Bethke, I.
2004-01-01
Based on an extremely simple program notation more advanced program features can be developed in linear projective program syntax such as conditional statements, while loops, recursion, use of an evaluation stack, object classes, method calls etc. Taking care of a cumulative and bottom up
Temporal Linear System Structure
Willigenburg, van L.G.; Koning, de W.L.
2008-01-01
Piecewise constant rank systems and the differential Kalman decomposition are introduced in this note. Together these enable the detection of temporal uncontrollability/unreconstructability of linear continuous-time systems. These temporal properties are not detected by any of the four conventional
Martin, Gale L
2004-07-01
This article proposes that visual encoding learning improves reading fluency by widening the span over which letters are recognized from a fixated text image so that fewer fixations are needed to cover a text line. Encoder is a connectionist model that learns to convert images like the fixated text images human readers encode into the corresponding letter sequences. The computational theory of classification learning predicts that fixated text-image size makes this learning difficult but that reducing image variability and biasing learning should help. Encoder confirms these predictions. It fails to learn as image size increases but achieves humanlike visual encoding accuracy when image variability is reduced by regularities in fixation positions and letter sequences and when learning is biased to discover mapping functions based on the sequential, componential structure of text. After training, Encoder exhibits many humanlike text familiarity effects. ((c) 2004 APA, all rights reserved)
Laser beam splitting by polarization encoding.
Wan, Chenhao
2015-03-20
A scheme is proposed to design a polarization grating that splits an incident linearly polarized beam to an array of linearly polarized beams of identical intensity distribution and various azimuth angles of linear polarization. The grating is equivalent to a wave plate with space-variant azimuth angle and space-variant phase retardation. The linear polarization states of all split beams make the grating suitable for coherent beam combining architectures based on Dammann gratings.
DNA-encoded chemistry: enabling the deeper sampling of chemical space.
Goodnow, Robert A; Dumelin, Christoph E; Keefe, Anthony D
2017-02-01
DNA-encoded chemical library technologies are increasingly being adopted in drug discovery for hit and lead generation. DNA-encoded chemistry enables the exploration of chemical spaces four to five orders of magnitude more deeply than is achievable by traditional high-throughput screening methods. Operation of this technology requires developing a range of capabilities including aqueous synthetic chemistry, building block acquisition, oligonucleotide conjugation, large-scale molecular biological transformations, selection methodologies, PCR, sequencing, sequence data analysis and the analysis of large chemistry spaces. This Review provides an overview of the development and applications of DNA-encoded chemistry, highlighting the challenges and future directions for the use of this technology.
Method of implementing frequency-encoded NOT, OR and NOR ...
Indian Academy of Sciences (India)
In this context, polarization encoding technique, intensity-based encoding technique, tristate and quaternary logic operation, multivalued logic operations, symbolic substitution techniques etc. may be mentioned. Very recently, frequency encoding/decoding technique has drawn interest from the scientific community.
Optical label encoding using electroabsorption modulators and investigation of chirp properties
DEFF Research Database (Denmark)
Xu, Lin; Chi, Nan; Oxenløwe, Leif Katsuo
2003-01-01
A novel scheme of optical label encoding by wavelength conversion based on electroabsorption modulators (EAMs) is reported. Based on the experimental observations, the chirp properties of the wavelength-converted signal are discussed and a wide dynamic range of the chirp α-parameter is found...... allowed. Compared with cross-gain modulation (XGM) in a semiconductor optical amplifier (SOA), the EAM has several advantages, which make it attractive for optical label encoding or other applications as a wavelength converter....
IDENTIFICATION OF LINEAR DYNAMIC SYSTEMS,
CONTROL SYSTEMS , LINEAR SYSTEMS ), (*LINEAR SYSTEMS , IDENTIFICATION ), REAL TIME, MONTE CARLO METHOD, LEAST SQUARES METHOD, SERIES(MATHEMATICS), STOCHASTIC PROCESSES, MATHEMATICAL PREDICTION, OPTIMIZATION, STABILITY
Keith P. Johnson; Lei Zhao; Daniel Kerschensteiner
2018-01-01
The spike trains of retinal ganglion cells (RGCs) are the only source of visual information to the brain. Here, we genetically identify an RGC type in mice that functions as a pixel encoder and increases firing to light increments (PixON-RGC). PixON-RGCs have medium-sized dendritic arbors and non-canonical center-surround receptive fields. From their receptive field center, PixON-RGCs receive only excitatory input, which encodes contrast and spatial information linearly. From their receptive ...
The International Linear Collider
Directory of Open Access Journals (Sweden)
List Benno
2014-04-01
Full Text Available The International Linear Collider (ILC is a proposed e+e− linear collider with a centre-of-mass energy of 200–500 GeV, based on superconducting RF cavities. The ILC would be an ideal machine for precision studies of a light Higgs boson and the top quark, and would have a discovery potential for new particles that is complementary to that of LHC. The clean experimental conditions would allow the operation of detectors with extremely good performance; two such detectors, ILD and SiD, are currently being designed. Both make use of novel concepts for tracking and calorimetry. The Japanese High Energy Physics community has recently recommended to build the ILC in Japan.
Linearity and Non-linearity of Photorefractive effect in Materials ...
African Journals Online (AJOL)
In this paper we have studied the Linearity and Non-linearity of Photorefractive effect in materials using the band transport model. For low light beam intensities the change in the refractive index is proportional to the electric field for linear optics while for non- linear optics the change in refractive index is directly proportional ...
Zimmermann, Frank
2001-01-01
Proceeding from the collision point towards the source, we discuss purpose and design concepts of the various linear-collider subsystems, as well as important mechanisms of emittance dilution, beam diagnostics, and advanced tuning methods. In particular, we address beamstrahlung, linac emittance degradation due to dispersion and wake fields, scaling of damping-ring parameters with collider energy, fast beam-ion and electron-cloud instabilities, coherent synchrotron radiation, and rf guns. Five case studies are examined in detail.
Graffi, Dario
2011-01-01
L. Cesari: Non-linear analysis.- J.K. Hale: Oscillations in neutral functional differential equations.- M. Jean: Elements de la theorie des equations differentielles avec commandes.- J. Mawhin: Un apercu des recherches belges en theorie des equations differentielles ordinaires dans le champ reel entre 1967 et 1972.- Yu A. Mitropol'skii: Certains aspects des progres de la methode de centrage.- Th. Vogel: Quelques problemes non lineaires en physique mathematique.
Relativistic Linear Restoring Force
Clark, D.; Franklin, J.; Mann, N.
2012-01-01
We consider two different forms for a relativistic version of a linear restoring force. The pair comes from taking Hooke's law to be the force appearing on the right-hand side of the relativistic expressions: d"p"/d"t" or d"p"/d["tau"]. Either formulation recovers Hooke's law in the non-relativistic limit. In addition to these two forces, we…
Sander, K F
1964-01-01
Linear Network Theory covers the significant algebraic aspect of network theory, with minimal reference to practical circuits. The book begins the presentation of network analysis with the exposition of networks containing resistances only, and follows it up with a discussion of networks involving inductance and capacity by way of the differential equations. Classification and description of certain networks, equivalent networks, filter circuits, and network functions are also covered. Electrical engineers, technicians, electronics engineers, electricians, and students learning the intricacies
Non linear viscoelastic models
DEFF Research Database (Denmark)
Agerkvist, Finn T.
2011-01-01
Viscoelastic eects are often present in loudspeaker suspensions, this can be seen in the displacement transfer function which often shows a frequency dependent value below the resonance frequency. In this paper nonlinear versions of the standard linear solid model (SLS) are investigated....... The simulations show that the nonlinear version of the Maxwell SLS model can result in a time dependent small signal stiness while the Kelvin Voight version does not....
Directory of Open Access Journals (Sweden)
João Ricardo Dittrich
2009-12-01
as EXP (1 pH-1, and the accumulated HCl in each interval. The transformation presented satisfactory fitting to linear regression for all materials evaluated, with r2 higher than 0.85 and standard error residual lower than 0.059. A positive correlation between TA and LB evaluated in the different ranges of pH was obtained. Unlike TA, the LB method makes it possible to obtain the BC as a single linear ratio, valuable for every pH interval from 8.0 to 2.0.
Calcium imaging with genetically encoded indicators in behaving primates.
Seidemann, Eyal; Chen, Yuzhi; Bai, Yoon; Chen, Spencer C; Mehta, Preeti; Kajs, Bridget L; Geisler, Wilson S; Zemelman, Boris V
2016-07-21
Understanding the neural basis of behaviour requires studying brain activity in behaving subjects using complementary techniques that measure neural responses at multiple spatial scales, and developing computational tools for understanding the mapping between these measurements. Here we report the first results of widefield imaging of genetically encoded calcium indicator (GCaMP6f) signals from V1 of behaving macaques. This technique provides a robust readout of visual population responses at the columnar scale over multiple mm(2) and over several months. To determine the quantitative relation between the widefield GCaMP signals and the locally pooled spiking activity, we developed a computational model that sums the responses of V1 neurons characterized by prior single unit measurements. The measured tuning properties of the GCaMP signals to stimulus contrast, orientation and spatial position closely match the predictions of the model, suggesting that widefield GCaMP signals are linearly related to the summed local spiking activity.
Designing waveforms for temporal encoding using a frequency sampling method
DEFF Research Database (Denmark)
Gran, Fredrik; Jensen, Jørgen Arendt
2007-01-01
In this paper a method for designing waveforms for temporal encoding in medical ultrasound imaging is described. The method is based on least squares optimization and is used to design nonlinear frequency modulated signals for synthetic transmit aperture imaging. By using the proposed design method......, the amplitude spectrum of the transmitted waveform can be optimized, such that most of the energy is transmitted where the transducer has large amplification. To test the design method, a waveform was designed for a BK8804 linear array transducer. The resulting nonlinear frequency modulated waveform...... waveform, on the other hand, was designed so that only frequencies where the transducer had a large amplification were excited. Hereby, unnecessary heating of the transducer could be avoided and the signal-tonoise ratio could be increased. The experimental ultrasound scanner RASMUS was used to evaluate...
Quantum repeaters based on trapped ions with decoherence-free subspace encoding
Zwerger, M.; Lanyon, B. P.; Northup, T. E.; Muschik, C. A.; Dür, W.; Sangouard, N.
2017-12-01
Quantum repeaters provide an efficient solution to distribute Bell pairs over arbitrarily long distances. While scalable architectures are demanding regarding the number of qubits that need to be controlled, here we present a quantum repeater scheme aiming to extend the range of present day quantum communications that could be implemented in the near future with trapped ions in cavities. We focus on an architecture where ion-photon entangled states are created locally and subsequently processed with linear optics to create elementary links of ion-ion entangled states. These links are then used to distribute entangled pairs over long distances using successive entanglement swapping operations performed using deterministic ion-ion gates. We show how this architecture can be implemented while encoding the qubits in a decoherence-free subspace to protect them against collective dephasing. This results in a protocol that can be used to violate a Bell inequality over distances of about 800 km assuming state-of-the-art parameters. We discuss how this could be improved to several thousand kilometres in future setups.
SHAPES - Spatial, high-accuracy, position-encoding sensor
Nerheim, Noble M.; Blue, Randel C.
1992-01-01
Future space systems will require control sensors capable of real-time measurements of position coordinates of many structural locations. Applications for such a sensor include figure and vibration control, rendezvous and docking, and structure assembly verification. The paper discusses an experimental study of SHAPES (spatial, high-accuracy, position-encoding sensor), a 3D position sensor that provides range and two angular positions of laser-illuminated retroreflector targets that mark the locations to be measured. Simultaneous range measurements to multiple targets by a time-of-flight corelation of short laser pulses are made with a CCD-equipped streak tube. Angular positions are measured with a CCD camera. Position measurements of 24 targets with sub-millimeter range accuracy at a 10 Hz update rate have been demonstrated.
An information theoretic characterisation of auditory encoding.
Directory of Open Access Journals (Sweden)
Tobias Overath
2007-10-01
Full Text Available The entropy metric derived from information theory provides a means to quantify the amount of information transmitted in acoustic streams like speech or music. By systematically varying the entropy of pitch sequences, we sought brain areas where neural activity and energetic demands increase as a function of entropy. Such a relationship is predicted to occur in an efficient encoding mechanism that uses less computational resource when less information is present in the signal: we specifically tested the hypothesis that such a relationship is present in the planum temporale (PT. In two convergent functional MRI studies, we demonstrated this relationship in PT for encoding, while furthermore showing that a distributed fronto-parietal network for retrieval of acoustic information is independent of entropy. The results establish PT as an efficient neural engine that demands less computational resource to encode redundant signals than those with high information content.
Encoding Microreactors with Droplet Chains in Microfluidics.
Song, Wenya; Lin, Gungun; Ge, Jin; Fassbender, Jürgen; Makarov, Denys
2017-12-13
Droplet-based high throughput biomolecular screening and combinatorial synthesis entail a viable indexing strategy to be developed for the identification of each microreactor. Here, we propose a novel indexing scheme based on the generation of droplet sequences on demand to form unique encoding droplet chains in fluidic networks. These codes are represented by multiunit and multilevel droplets packages, with each code unit possessing several distinct signal levels, potentially allowing large encoding capacity. For proof of concept, we use magnetic nanoparticles as the encoding material and a giant magnetoresistance (GMR) sensor-based active sorting system supplemented with an optical detector to generate and decode the sequence of one exemplar sample droplet reactor and a 4-unit quaternary magnetic code. The indexing capacity offered by 4-unit multilevel codes with this indexing strategy is estimated to exceed 104, which holds great promise for large-scale droplet-based screening and synthesis.
Recent Advances in Development of Genetically Encoded Fluorescent Sensors.
Sanford, Lynn; Palmer, Amy
2017-01-01
Genetically encoded fluorescent sensors are essential tools in modern biological research, and recent advances in fluorescent proteins (FPs) have expanded the scope of sensor design and implementation. In this review we compare different sensor platforms, including Förster resonance energy transfer (FRET) sensors, fluorescence-modulated single FP-based sensors, translocation sensors, complementation sensors, and dimerization-based sensors. We discuss elements of sensor design and engineering for each platform, including the incorporation of new types of FPs and sensor screening techniques. Finally, we summarize the wide range of sensors in the literature, exploring creative new sensor architectures suitable for different applications. © 2017 Elsevier Inc. All rights reserved.
The mathematics of networks of linear systems
Fuhrmann, Paul A
2015-01-01
This book provides the mathematical foundations of networks of linear control systems, developed from an algebraic systems theory perspective. This includes a thorough treatment of questions of controllability, observability, realization theory, as well as feedback control and observer theory. The potential of networks for linear systems in controlling large-scale networks of interconnected dynamical systems could provide insight into a diversity of scientific and technological disciplines. The scope of the book is quite extensive, ranging from introductory material to advanced topics of current research, making it a suitable reference for graduate students and researchers in the field of networks of linear systems. Part I can be used as the basis for a first course in algebraic system theory, while Part II serves for a second, advanced, course on linear systems. Finally, Part III, which is largely independent of the previous parts, is ideally suited for advanced research seminars aimed at preparing graduate ...
Datacube Interoperability, Encoding Independence, and Analytics
Baumann, Peter; Hirschorn, Eric; Maso, Joan
2017-04-01
representations. Further, CIS 1.1 offers a unified model for any kind of regular and irregular grids, also allowing sensor models as per SensorML. Encodings include ASCII formats like GML, JSON, RDF as well as binary formats like GeoTIFF, NetCDF, JPEG2000, and GRIB2; further, a container concept allows mixed representations within one coverage file utilizing zip or other convenient package formats. Through the tight integration with the Sensor Web Enablement (SWE), a lossless "transport" from sensor into coverage world is ensured. The corresponding service model of WCS supports datacube operations ranging from simple data extraction to complex ad-hoc analytics with WPCS. Notably, W3C is working has set out on a coverage model as well; it has been designed relatively independently from the abovementioned standards, but there is informal agreement to link it into the CIS universe (which allows for different, yet interchangeable representations). Particularly interesting in the W3C proposal is the detailed semantic modeling of metadata; as CIS 1.1 supports RDF, a tight coupling seems feasible.
Lopez, Cesar
2014-01-01
MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. MATLAB Linear Algebra introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. In addition to giving an introduction to
Wangler, Thomas P
2008-01-01
Thomas P. Wangler received his B.S. degree in physics from Michigan State University, and his Ph.D. degree in physics and astronomy from the University of Wisconsin. After postdoctoral appointments at the University of Wisconsin and Brookhaven National Laboratory, he joined the staff of Argonne National Laboratory in 1966, working in the fields of experimental high-energy physics and accelerator physics. He joined the Accelerator Technology Division at Los Alamos National Laboratory in 1979, where he specialized in high-current beam physics and linear accelerator design and technology. In 2007
Fermionic Linear Optics and Matchgates
Knill, E.
2001-01-01
Fermionic linear optics is efficiently classically simulatable. Here it is shown that the set of states achievable with fermionic linear optics and particle measurements is the closure of a low dimensional Lie group. The weakness of fermionic linear optics and measurements can therefore be explained and contrasted with the strength of bosonic linear optics with particle measurements. An analysis of fermionic linear optics is used to show that the two-qubit matchgates and the simulatable match...
Diameter preserving linear maps and isometries, II
Indian Academy of Sciences (India)
We study linear bijections of simplex spaces A ( S ) which preserve the diameter of the range, that is, the seminorm ϱ ( f ) = sup { | f ( x ) − f ( y ) | : x , y ∈ S } . Author Affiliations. Félix Cabello Sánchez1. Departamento de Matemáticas, Universidad de Extremadura, Avenida de Elvas 06071- Badajoz, Spain. Dates. Manuscript ...
Drift wave launching in a linear quadrupole
Energy Technology Data Exchange (ETDEWEB)
Tessema, G.Y.; Elliott, J.A.; Rusbridge, M.G. (Manchester Univ. (UK). Inst. of Science and Technology)
1989-12-01
Drift waves have been successfully launched from flag probes in a steady-state magnetized plasma, and the launching mechanism has been identified. Non-linear interactions are observed between launched and intrinsic waves. A wide range of further experimental studies is thus made possible, of fundamental relevance to plasma confinement. (author).
Pharmaceutical applications of non-linear imaging
Strachan, Clare J.; Windbergs, Maike; Offerhaus, Herman L.
2011-01-01
Non-linear optics encompasses a range of optical phenomena, including two- and three-photon fluorescence, second harmonic generation (SHG), sum frequency generation (SFG), difference frequency generation (DFG), third harmonic generation (THG), coherent anti-Stokes Raman scattering (CARS), and
Stochastic development regression on non-linear manifolds
DEFF Research Database (Denmark)
Kühnel, Line; Sommer, Stefan Horst
2017-01-01
processes to the manifold. Defining the data distribution as the transition distribution of the mapped stochastic process, parameters of the model, the non-linear analogue of design matrix and intercept, are found via maximum likelihood. The model is intrinsically related to the geometry encoded......We introduce a regression model for data on non-linear manifolds. The model describes the relation between a set of manifold valued observations, such as shapes of anatomical objects, and Euclidean explanatory variables. The approach is based on stochastic development of Euclidean diffusion...
Repeat-until-success linear optics distributed quantum computing.
Lim, Yuan Liang; Beige, Almut; Kwek, Leong Chuan
2005-07-15
We demonstrate the possibility to perform distributed quantum computing using only single-photon sources (atom-cavity-like systems), linear optics, and photon detectors. The qubits are encoded in stable ground states of the sources. To implement a universal two-qubit gate, two photons should be generated simultaneously and pass through a linear optics network, where a measurement is performed on them. Gate operations can be repeated until a success is heralded without destroying the qubits at any stage of the operation. In contrast with other schemes, this does not require explicit qubit-qubit interactions, a priori entangled ancillas, nor the feeding of photons into photon sources.
Encoding and Decoding Procedures for Arrangements
Directory of Open Access Journals (Sweden)
Alexander A. Babaev
2012-05-01
Full Text Available This article discusses an algorithm based on the encoding procedure for representing a set of arrangement elements as a single number. Also the author provides the procedure for the inverse transformation of the code into arrangement elements. In addition the Article includes recommendations on the use of the above procedures in combinatorial algorithms of optimization.
Encoders for block-circulant LDPC codes
Divsalar, Dariush (Inventor); Abbasfar, Aliazam (Inventor); Jones, Christopher R. (Inventor); Dolinar, Samuel J. (Inventor); Thorpe, Jeremy C. (Inventor); Andrews, Kenneth S. (Inventor); Yao, Kung (Inventor)
2009-01-01
Methods and apparatus to encode message input symbols in accordance with an accumulate-repeat-accumulate code with repetition three or four are disclosed. Block circulant matrices are used. A first method and apparatus make use of the block-circulant structure of the parity check matrix. A second method and apparatus use block-circulant generator matrices.
Optimal Achievable Encoding for Brain Machine Interface
2017-12-22
Brain - Machine Interface Eduardo Chichilnisky Leland Stanford Junior...Oct 2016 – 30 Sep 2017 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER Optimal Achievable Encoding for Brain - Machine Interface 5b...Stanford Artificial Retina 15. SUBJECT TERMS Artificial retina, Retinal prosthesis, Brain - machine interface , Brain -computer interface ,
Evaluative and Taxonomic Encoding in Children's Memory.
Kail, Robert V., Jr.; Schroll, John T.
Two experiments were conducted to investigate the development of evaluative and taxonomic encoding in children's memory. The task used was a modification of the Wickens short-term memory task in which subjects' recall of words is tested following a distraction task. The first experiment found that 11-year-old children, but not 8-year-old children,…
Visual Memory : The Price of Encoding Details
Nieuwenstein, Mark; Kromm, Maria
2017-01-01
Studies on visual long-term memory have shown that we have a tremendous capacity for remembering pictures of objects, even at a highly detailed level. What remains unclear, however, is whether encoding objects at such a detailed level comes at any cost. In the current study, we examined how the
Letter-Position Encoding and Dyslexia
Whitney, Carol; Cornelissen, Piers
2005-01-01
This article focuses on applying the SERIOL model of orthographic processing to dyslexia. The model is extended to include a phonological route and reading acquisition. We propose that the temporal alignment of serial orthographic and phonological representations is a key aspect of learning to read, driving the formation of a phonemic encoding.…
Phenotypic and Molecular Characterization of Plasmid- Encoded ...
African Journals Online (AJOL)
Purpose: To investigate the distribution of plasmid-encoded extended spectrum beta-lacatamases (ESBLs) in Lahore, Pakistan using different phenotypic and molecular methods. Methods: Escherichia coli and Klebsiella spp were obtained over a period of nineteen months (June 2007 to December 2008). Both were tested ...
How Attention Modulates Encoding of Dynamic Stimuli
Directory of Open Access Journals (Sweden)
Noga Oren
2016-10-01
Full Text Available When encoding a real-life, continuous stimulus, the same neural circuits support processing and integration of prior as well as new incoming information. This ongoing interplay is modulated by attention, which is evident in the prefrontal cortex sections of the task positive network (TPN, and in the posterior cingulate cortex (PCC, a hub of the default mode network (DMN. Yet the exact nature of such modulation is still unclear. To investigate this issue, we utilized an fMRI task that employed movies as the encoded stimuli and manipulated attentional load via an easy or hard secondary task that was performed simultaneously with encoding. Results showed increased intersubject correlation (inter-SC levels when encoding movies in a condition of high, as compared to low attentional load. This was evident in bilateral ventrolateral and dorsomedial prefrontal cortices and the dorsal PCC (dPCC. These regions became more attuned to the combination of the movie and the secondary task as the attentional demand of the task increased. Activation analyses revealed that at higher load the frontal TPN regions were more activated, whereas the dPCC was more deactivated. Attentional load also influenced connectivity within and between the networks. At high load the dPCC was anti-correlated to the frontal regions, which were more functionally coherent amongst themselves. Finally and critically, greater inter-SC in the dPCC at high load during encoding predicted lower memory strength when that information was retrieved. This association between inter-SC levels and memory strength suggest that as attentional demands increased, the dPCC was more attuned to the secondary task at the expense of the encoded stimulus, thus weakening memory for the encoded stimulus. Together, our findings show that attentional load modulated the function of core TPN and DMN regions. Furthermore, the observed correlation between memory strength and the modulation of the dPCC points to this
Faraway, Julian J
2005-01-01
Linear models are central to the practice of statistics and form the foundation of a vast range of statistical methodologies. Julian J. Faraway''s critically acclaimed Linear Models with R examined regression and analysis of variance, demonstrated the different methods available, and showed in which situations each one applies. Following in those footsteps, Extending the Linear Model with R surveys the techniques that grow from the regression model, presenting three extensions to that framework: generalized linear models (GLMs), mixed effect models, and nonparametric regression models. The author''s treatment is thoroughly modern and covers topics that include GLM diagnostics, generalized linear mixed models, trees, and even the use of neural networks in statistics. To demonstrate the interplay of theory and practice, throughout the book the author weaves the use of the R software environment to analyze the data of real examples, providing all of the R commands necessary to reproduce the analyses. All of the ...
Shot-Noise Limited Time-Encoded Raman Spectroscopy
Directory of Open Access Journals (Sweden)
Sebastian Karpf
2017-01-01
Full Text Available Raman scattering, an inelastic scattering mechanism, provides information about molecular excitation energies and can be used to identify chemical compounds. Albeit being a powerful analysis tool, especially for label-free biomedical imaging with molecular contrast, it suffers from inherently low signal levels. This practical limitation can be overcome by nonlinear enhancement techniques like stimulated Raman scattering (SRS. In SRS, an additional light source stimulates the Raman scattering process. This can lead to orders of magnitude increase in signal levels and hence faster acquisition in biomedical imaging. However, achieving a broad spectral coverage in SRS is technically challenging and the signal is no longer background-free, as either stimulated Raman gain (SRG or loss (SRL is measured, turning a sensitivity limit into a dynamic range limit. Thus, the signal has to be isolated from the laser background light, requiring elaborate methods for minimizing detection noise. Here, we analyze the detection sensitivity of a shot-noise limited broadband stimulated time-encoded Raman (TICO-Raman system in detail. In time-encoded Raman, a wavelength-swept Fourier domain mode locking (FDML laser covers a broad range of Raman transition energies while allowing a dual-balanced detection for lowering the detection noise to the fundamental shot-noise limit.
On the linear programming bound for linear Lee codes.
Astola, Helena; Tabus, Ioan
2016-01-01
Based on an invariance-type property of the Lee-compositions of a linear Lee code, additional equality constraints can be introduced to the linear programming problem of linear Lee codes. In this paper, we formulate this property in terms of an action of the multiplicative group of the field [Formula: see text] on the set of Lee-compositions. We show some useful properties of certain sums of Lee-numbers, which are the eigenvalues of the Lee association scheme, appearing in the linear programming problem of linear Lee codes. Using the additional equality constraints, we formulate the linear programming problem of linear Lee codes in a very compact form, leading to a fast execution, which allows to efficiently compute the bounds for large parameter values of the linear codes.
A cloned gene of Cryptosporidium parvum encodes neutralization-sensitive epitopes.
Perryman, L E; Jasmer, D P; Riggs, M W; Bohnet, S G; McGuire, T C; Arrowood, M J
1996-10-01
Two mAb, C6B6 and 7D10, each significantly reduced infection of mice by Cryptosporidium parvum and reacted with a 23-kDa glycoprotein (p23) of geographically disperse C. parvum isolates. The antibodies were used to identify plaques in a cDNA library prepared from C. parvum sporozoite mRNA. cDNA insert sequences from positive plaques were determined and used to isolate additional clones encoding p23 coding sequences. A consensus open reading frame of 333 base pairs, encoding 111 amino acids, was identified in this collection of cDNAs. The predicted amino acid sequence contained one N-glycosylation site, but lacked hydrophobic membrane spanning regions. Epitope mapping revealed that mAb 7D10 defines the linear epitope QDKPAD which occurs twice in the C terminal region of the peptide encoded by the ORF. This same C terminal peptide region contains a non-linear epitope bound by mAb C6B6. Serum from mice immunized with synthetic C terminal peptide reacted with sporozoite p23. The occurrence of neutralization-sensitive epitopes encoded by defined regions of the C. parvum genome suggests that recombinant proteins or synthetic peptides containing these epitopes may prove useful for inducing immune responses that diminish infection.
Introduction to linear elasticity
Gould, Phillip L
2013-01-01
Introduction to Linear Elasticity, 3rd Edition, provides an applications-oriented grounding in the tensor-based theory of elasticity for students in mechanical, civil, aeronautical, and biomedical engineering, as well as materials and earth science. The book is distinct from the traditional text aimed at graduate students in solid mechanics by introducing the subject at a level appropriate for advanced undergraduate and beginning graduate students. The author's presentation allows students to apply the basic notions of stress analysis and move on to advanced work in continuum mechanics, plasticity, plate and shell theory, composite materials, viscoelasticity and finite method analysis. This book also: Emphasizes tensor-based approach while still distilling down to explicit notation Provides introduction to theory of plates, theory of shells, wave propagation, viscoelasticity and plasticity accessible to advanced undergraduate students Appropriate for courses following emerging trend of teaching solid mechan...
Extreme bosonic linear channels
Holevo, A. S.
2013-02-01
The set of all channels with a fixed input and output is convex. We first give a convenient formulation of the necessary and sufficient condition for a channel to be an extreme point of this set in terms of the complementary channel, a notion of great importance in quantum information theory. This formulation is based on the general approach to extremality of completely positive maps in an operator algebra in the spirit of Arveson. We then use this formulation to prove our main result: under certain nondegeneracy conditions, environmental purity is necessary and sufficient for the extremality of a bosonic linear (quasifree) channel. It hence follows that a Gaussian channel between finite-mode bosonic systems is extreme if and only if it has minimum noise.
Rakheja, S; Gurram, R; Gouw, G J
1993-10-01
Hand-arm vibration (HAV) models serve as an effective tool to assess the vibration characteristics of the hand-tool system and to evaluate the attenuation performance of vibration isolation mechanisms. This paper describes a methodology to identify the parameters of HAV models, whether linear or nonlinear, using mechanical impedance data and a nonlinear programming based optimization technique. Three- and four-degrees-of-freedom (DOF) linear, piecewise linear and nonlinear HAV models are formulated and analyzed to yield impedance characteristics in the 5-1000 Hz frequency range. A local equivalent linearization algorithm, based upon the principle of energy similarity, is implemented to simulate the nonlinear HAV models. Optimization methods are employed to identify the model parameters, such that the magnitude and phase errors between the computed and measured impedance characteristics are minimum in the entire frequency range. The effectiveness of the proposed method is demonstrated through derivations of models that correlate with the measured X-axis impedance characteristics of the hand-arm system, proposed by ISO. The results of the study show that a linear model cannot predict the impedance characteristics in the entire frequency range, while a piecewise linear model yields an accurate estimation.
G-frames with bounded linear operators
Xiao, Xiang-chun; Zhu, Yu-can; Shu, Zhi-biao; Ding, Ming-ling
2015-01-01
In this paper, we introduce the more general g-frame which is called a $K$-g-frame by combining a g-frame with a bounded linear operator $K$ in a Hilbert space. We give several equivalent characterizations for $K$-g-frames and discuss the stability of perturbation for $K$-g-frames. We also investigate the relationship between a $K$-g-frame and the range of the bounded linear operator $K$. In the end, we give two sufficient conditions for the remainder of a $K$-g-frame after an erasure to stil...
A dynamic linearization concept for piezoelectric actuators.
Biancuzzi, Giovanni; Haller, Daniel; Lemke, Thomas; Wischke, Martin; Goldschmidtboeing, Frank; Woias, Peter
2011-04-01
We present a linearization circuit based on a capacitive Wheatstone bridge that is able to set a desired polarization in a piezoactuator. The system is meant to be used for dynamic actuation in a broad frequency range. A general nonlinear model for piezoactuators is presented in which two nonlinear sub-systems are cascaded: the electric-field-to-polarization (E-P) and the polarization-to-strain (P-x) blocks. The inversion of the latter sub-system in combination with the linearization bridge results in a reduction of up to 19 dB of the harmonic distortion of the actuator's mechanical displacement. © 2011 IEEE
Computer Program For Linear Algebra
Krogh, F. T.; Hanson, R. J.
1987-01-01
Collection of routines provided for basic vector operations. Basic Linear Algebra Subprogram (BLAS) library is collection from FORTRAN-callable routines for employing standard techniques to perform basic operations of numerical linear algebra.
Monahan, John F
2008-01-01
Preface Examples of the General Linear Model Introduction One-Sample Problem Simple Linear Regression Multiple Regression One-Way ANOVA First Discussion The Two-Way Nested Model Two-Way Crossed Model Analysis of Covariance Autoregression Discussion The Linear Least Squares Problem The Normal Equations The Geometry of Least Squares Reparameterization Gram-Schmidt Orthonormalization Estimability and Least Squares Estimators Assumptions for the Linear Mean Model Confounding, Identifiability, and Estimability Estimability and Least Squares Estimators F
DNA-Encoded Dynamic Combinatorial Chemical Libraries.
Reddavide, Francesco V; Lin, Weilin; Lehnert, Sarah; Zhang, Yixin
2015-06-26
Dynamic combinatorial chemistry (DCC) explores the thermodynamic equilibrium of reversible reactions. Its application in the discovery of protein binders is largely limited by difficulties in the analysis of complex reaction mixtures. DNA-encoded chemical library (DECL) technology allows the selection of binders from a mixture of up to billions of different compounds; however, experimental results often show low a signal-to-noise ratio and poor correlation between enrichment factor and binding affinity. Herein we describe the design and application of DNA-encoded dynamic combinatorial chemical libraries (EDCCLs). Our experiments have shown that the EDCCL approach can be used not only to convert monovalent binders into high-affinity bivalent binders, but also to cause remarkably enhanced enrichment of potent bivalent binders by driving their in situ synthesis. We also demonstrate the application of EDCCLs in DNA-templated chemical reactions. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Nucleic acid compositions and the encoding proteins
Preston, III, James F.; Chow, Virginia; Nong, Guang; Rice, John D.; St. John, Franz J.
2014-09-02
The subject invention provides at least one nucleic acid sequence encoding an aldouronate-utilization regulon isolated from Paenibacillus sp. strain JDR-2, a bacterium which efficiently utilizes xylan and metabolizes aldouronates (methylglucuronoxylosaccharides). The subject invention also provides a means for providing a coordinately regulated process in which xylan depolymerization and product assimilation are coupled in Paenibacillus sp. strain JDR-2 to provide a favorable system for the conversion of lignocellulosic biomass to biobased products. Additionally, the nucleic acid sequences encoding the aldouronate-utilization regulon can be used to transform other bacteria to form organisms capable of producing a desired product (e.g., ethanol, 1-butanol, acetoin, 2,3-butanediol, 1,3-propanediol, succinate, lactate, acetate, malate or alanine) from lignocellulosic biomass.
Parameter Estimation of Turbo Code Encoder
Directory of Open Access Journals (Sweden)
Mehdi Teimouri
2014-01-01
Full Text Available The problem of reconstruction of a channel code consists of finding out its design parameters solely based on its output. This paper investigates the problem of reconstruction of parallel turbo codes. Reconstruction of a turbo code has been addressed in the literature assuming that some of the parameters of the turbo encoder, such as the number of input and output bits of the constituent encoders and puncturing pattern, are known. However in practical noncooperative situations, these parameters are unknown and should be estimated before applying reconstruction process. Considering such practical situations, this paper proposes a novel method to estimate the above-mentioned code parameters. The proposed algorithm increases the efficiency of the reconstruction process significantly by judiciously reducing the size of search space based on an analysis of the observed channel code output. Moreover, simulation results show that the proposed algorithm is highly robust against channel errors when it is fed with noisy observations.
Templates for Linear Algebra Problems
Bai, Z.; Day, D.; Demmel, J.; Dongarra, J.; Gu, M.; Ruhe, A.; Vorst, H.A. van der
1995-01-01
The increasing availability of advanced-architecture computers is having a very signicant eect on all spheres of scientic computation, including algorithm research and software development in numerical linear algebra. Linear algebra {in particular, the solution of linear systems of equations and
DEFF Research Database (Denmark)
Engberg, Uffe Henrik; Winskel, Glynn
This article shows how individual Petri nets form models of Girard's intuitionistic linear logic. It explores questions of expressiveness and completeness of linear logic with respect to this interpretation. An aim is to use Petri nets to give an understanding of linear logic and give some apprai...
An Encoding of XQuery in Prolog
Almendros-Jiménez, Jesús M.
In this paper we describe the implementation of (a subset of) the XQuery language using logic programming (in particular, by means of Prolog). Such implementation has been developed using the Prolog interpreter SWI-Prolog. XML files are handled by means of the XML Library of SWI-Prolog. XPath/XQuery are encoded by means of Prolog rules. Such Prolog rules are executed in order to obtain the answer of the query.
Toward Chemical Implementation of Encoded Combinatorial Libraries
DEFF Research Database (Denmark)
Nielsen, John; Janda, Kim D.
1994-01-01
The recent application of "combinatorial libraries" to supplement existing drug screening processes might simplify and accelerate the search for new lead compounds or drugs. Recently, a scheme for encoded combinatorial chemistry was put forward to surmount a number of the limitations possessed...... by existing methodologies. Here we detail the synthesis of several matrices and the necessary chemistry to implement the conceptual scheme. In addition, we disclose how this novel technology permits a controlled ′dendritic" display of the chemical libraries....
Range management visual impacts
Bruce R. Brown; David Kissel
1979-01-01
Historical overgrazing of western public rangelands has resulted in the passage of the Public Rangeland Improvement Act of 1978. The main purpose of this Act is to improve unsatisfactory range conditions. A contributing factor to unfavorable range conditions is adverse visual impacts. These visual impacts can be identified in three categories of range management: range...
Large linear plasmids of Borrelia species that cause relapsing fever.
Miller, Shelley Campeau; Porcella, Stephen F; Raffel, Sandra J; Schwan, Tom G; Barbour, Alan G
2013-08-01
Borrelia species of relapsing fever (RF) and Lyme disease (LD) lineages have linear chromosomes and both linear and circular plasmids. Unique to RF species, and little characterized to date, are large linear plasmids of ∼160 kb, or ∼10% of the genome. By a combination of Sanger and next-generation methods, we determined the sequences of large linear plasmids of two New World species: Borrelia hermsii, to completion of its 174-kb length, and B. turicatae, partially to 114 kb of its 150 kb. These sequences were then compared to corresponding sequences of the Old World species B. duttonii and B. recurrentis and to plasmid sequences of LD Borrelia species. The large plasmids were largely colinear, except for their left ends, about 27 kb of which was inverted in New World species. Approximately 60% of the B. hermsii lp174 plasmid sequence was repetitive for 6 types of sequence, and half of its open reading frames encoded hypothetical proteins not discernibly similar to proteins in the database. The central ∼25 kb of all 4 linear plasmids was syntenic for orthologous genes for plasmid maintenance or partitioning in Borrelia species. Of all the sequenced linear and circular plasmids in Borrelia species, the large plasmid's putative partition/replication genes were most similar to those of the 54-kb linear plasmids of LD species. Further evidence for shared ancestry was the observation that two of the hypothetical proteins were predicted to be structurally similar to the LD species' CspA proteins, which are encoded on the 54-kb plasmids.
Das, Rahul K; Pappu, Rohit V
2013-08-13
The functions of intrinsically disordered proteins (IDPs) are governed by relationships between information encoded in their amino acid sequences and the ensembles of conformations that they sample as autonomous units. Most IDPs are polyampholytes, with sequences that include both positively and negatively charged residues. Accordingly, we focus here on the sequence-ensemble relationships of polyampholytic IDPs. The fraction of charged residues discriminates between weak and strong polyampholytes. Using atomistic simulations, we show that weak polyampholytes form globules, whereas the conformational preferences of strong polyampholytes are determined by a combination of fraction of charged residues values and the linear sequence distributions of oppositely charged residues. We quantify the latter using a patterning parameter κ that lies between zero and one. The value of κ is low for well-mixed sequences, and in these sequences, intrachain electrostatic repulsions and attractions are counterbalanced, leading to the unmasking of preferences for conformations that resemble either self-avoiding random walks or generic Flory random coils. Segregation of oppositely charged residues within linear sequences leads to high κ-values and preferences for hairpin-like conformations caused by long-range electrostatic attractions induced by conformational fluctuations. We propose a scaling theory to explain the sequence-encoded conformational properties of strong polyampholytes. We show that naturally occurring strong polyampholytes have low κ-values, and this feature implies a selection for random coil ensembles. The design of sequences with different κ-values demonstrably alters the conformational preferences of polyampholytic IDPs, and this ability could become a useful tool for enabling direct inquiries into connections between sequence-ensemble relationships and functions of IDPs.
An Intensional Concurrent Faithful Encoding of Turing Machines
Directory of Open Access Journals (Sweden)
Thomas Given-Wilson
2014-10-01
Full Text Available The benchmark for computation is typically given as Turing computability; the ability for a computation to be performed by a Turing Machine. Many languages exploit (indirect encodings of Turing Machines to demonstrate their ability to support arbitrary computation. However, these encodings are usually by simulating the entire Turing Machine within the language, or by encoding a language that does an encoding or simulation itself. This second category is typical for process calculi that show an encoding of lambda-calculus (often with restrictions that in turn simulates a Turing Machine. Such approaches lead to indirect encodings of Turing Machines that are complex, unclear, and only weakly equivalent after computation. This paper presents an approach to encoding Turing Machines into intensional process calculi that is faithful, reduction preserving, and structurally equivalent. The encoding is demonstrated in a simple asymmetric concurrent pattern calculus before generalised to simplify infinite terms, and to show encodings into Concurrent Pattern Calculus and Psi Calculi.
Encoded libraries of chemically modified peptides.
Heinis, Christian; Winter, Greg
2015-06-01
The use of powerful technologies for generating and screening DNA-encoded protein libraries has helped drive the development of proteins as pharmaceutical ligands. However the development of peptides as pharmaceutical ligands has been more limited. Although encoded peptide libraries are typically several orders of magnitude larger than classical chemical libraries, can be more readily screened, and can give rise to higher affinity ligands, their use as pharmaceutical ligands is limited by their intrinsic properties. Two of the intrinsic limitations include the rotational flexibility of the peptide backbone and the limited number (20) of natural amino acids. However these limitations can be overcome by use of chemical modification. For example, the libraries can be modified to introduce topological constraints such as cyclization linkers, or to introduce new chemical entities such as small molecule ligands, fluorophores and photo-switchable compounds. This article reviews the chemistry involved, the properties of the peptide ligands, and the new opportunities offered by chemical modification of DNA-encoded peptide libraries. Copyright © 2015. Published by Elsevier Ltd.
Blind Identification of Convolutional Encoder Parameters
Directory of Open Access Journals (Sweden)
Shaojing Su
2014-01-01
Full Text Available This paper gives a solution to the blind parameter identification of a convolutional encoder. The problem can be addressed in the context of the noncooperative communications or adaptive coding and modulations (ACM for cognitive radio networks. We consider an intelligent communication receiver which can blindly recognize the coding parameters of the received data stream. The only knowledge is that the stream is encoded using binary convolutional codes, while the coding parameters are unknown. Some previous literatures have significant contributions for the recognition of convolutional encoder parameters in hard-decision situations. However, soft-decision systems are applied more and more as the improvement of signal processing techniques. In this paper we propose a method to utilize the soft information to improve the recognition performances in soft-decision communication systems. Besides, we propose a new recognition method based on correlation attack to meet low signal-to-noise ratio situations. Finally we give the simulation results to show the efficiency of the proposed methods.
Shift-encoded optically multiplexed imaging
Shah, Vinay; Rachlin, Yaron; Shepard, R. Hamilton; Shih, Tina
2017-04-01
In a multiplexed image, multiple fields-of-view (FoVs) are superimposed onto a common focal plane. The attendant gain in sensor FoV provides a new degree of freedom in the design of an imaging system, allowing for performance tradeoffs not available in traditional optical designs. We explore design choices relating to a shift-encoded optically multiplexed imaging system and discuss their performance implications. Unlike in a traditional imaging system, a single multiplexed image has a fundamental ambiguity regarding the location of objects in the image. We present a system that can shift each FoV independently to break this ambiguity and compare it to other potential disambiguation techniques. We then discuss the optical, mechanical, and encoding design choices of a shift-encoding midwave infrared imaging system that multiplexes six 15×15 deg FoVs onto a single one megapixel focal plane. Using this sensor, we demonstrate a computationally demultiplexed wide FoV video.
A Novel Design Of An NTC Thermistor Linearization Circuit
Directory of Open Access Journals (Sweden)
Lukić Jelena
2015-09-01
Full Text Available A novel design of a circuit used for NTC thermistor linearization is proposed. The novelty of the proposed design consists in a specific combination of two linearization circuits, a serial-parallel resistive voltage divider and a two-stage piecewise linear analog-to-digital converter. At the output of the first linearization circuit the quasi-linear voltage is obtained. To remove the residual voltage nonlinearity, the second linearization circuit, i.e., a two-stage piecewise linear analog-to-digital converter is employed. This circuit is composed of two flash analog-to-digital converters. The first analog-to-digital converter is piecewise linear and it is actually performing the linearization, while the second analog-to-digital converter is linear and it is performing the reduction of the quantization error introduced by the first converter. After the linearization is performed, the maximal absolute value of a difference between the measured and real temperatures is 0.014°C for the temperature range between −25 and 75°C, and 0.001°C for the temperature range between 10 and 40°C.
Myszkowski, Karol
2008-01-01
This book presents a complete pipeline forHDR image and video processing fromacquisition, through compression and quality evaluation, to display. At the HDR image and video acquisition stage specialized HDR sensors or multi-exposure techniques suitable for traditional cameras are discussed. Then, we present a practical solution for pixel values calibration in terms of photometric or radiometric quantities, which are required in some technically oriented applications. Also, we cover the problem of efficient image and video compression and encoding either for storage or transmission purposes, in
Linear response of entanglement entropy from holography
Lokhande, Sagar F.; Oling, Gerben W. J.; Pedraza, Juan F.
2017-10-01
For time-independent excited states in conformal field theories, the entanglement entropy of small subsystems satisfies a `first law'-like relation, in which the change in entanglement is proportional to the energy within the entangling region. Such a law holds for time-dependent scenarios as long as the state is perturbatively close to the vacuum, but is not expected otherwise. In this paper we use holography to investigate the spread of entanglement entropy for unitary evolutions of special physical interest, the so-called global quenches. We model these using AdS-Vaidya geometries. We find that the first law of entanglement is replaced by a linear response relation, in which the energy density takes the role of the source and is integrated against a time-dependent kernel with compact support. For adiabatic quenches the standard first law is recovered, while for rapid quenches the linear response includes an extra term that encodes the process of thermalization. This extra term has properties that resemble a time-dependent `relative entropy'. We propose that this quantity serves as a useful order parameter to characterize far-from-equilibrium excited states. We illustrate our findings with concrete examples, including generic power-law and periodically driven quenches.
Method and apparatus for coherent burst ranging
Wachter, Eric A.; Fisher, Walter G.
1998-01-01
A high resolution ranging method is described utilizing a novel modulated waveform, hereafter referred to as coherent burst modulation. In the coherent burst method, high frequency modulation of an acoustic or electromagnetic transmitter, such as a laser, is performed at a modulation frequency. This modulation frequency is transmitted quasi-continuously in the form of interrupted bursts of radiation. Energy from the transmitter is directed onto a target, interacts with the target, and the returning energy is collected. The encoded burst pattern contained in the collected return signal is detected coherently by a receiver that is tuned so as to be principally sensitive to the modulation frequency. The receiver signal is processed to determine target range using both time-of-flight of the burst envelope and phase shift of the high frequency modulation. This approach effectively decouples the maximum unambiguous range and range resolution relationship of earlier methods, thereby allowing high precision ranging to be conducted at arbitrarily long distances using at least one burst of encoded energy. The use of a receiver tuned to the high frequency modulation contained within the coherent burst vastly improves both sensitivity in the detection of the target return signal and rejection of background interferences, such as ambient acoustic or electromagnetic noise. Simultaneous transmission at several energies (or wavelengths) is possible by encoding each energy with a separate modulation frequency or pattern; electronic demodulation at the receiver allows the return pattern for each energy to be monitored independently. Radial velocity of a target can also be determined by monitoring change in phase shift of the return signal as a function of time.
Linear algebra and its applications
Lax, Peter D
2013-01-01
Praise for the First Edition"". . .recommended for the teacher and researcher as well as for graduate students. In fact, [it] has a place on every mathematician's bookshelf."" -American Mathematical MonthlyLinear Algebra and Its Applications, Second Edition presents linear algebra as the theory and practice of linear spaces and linear maps with a unique focus on the analytical aspects as well as the numerous applications of the subject. In addition to thorough coverage of linear equations, matrices, vector spaces, game theory, and numerical analysis, the Second Edition features
LINEAR - DERIVATION AND DEFINITION OF A LINEAR AIRCRAFT MODEL
Duke, E. L.
1994-01-01
The Derivation and Definition of a Linear Model program, LINEAR, provides the user with a powerful and flexible tool for the linearization of aircraft aerodynamic models. LINEAR was developed to provide a standard, documented, and verified tool to derive linear models for aircraft stability analysis and control law design. Linear system models define the aircraft system in the neighborhood of an analysis point and are determined by the linearization of the nonlinear equations defining vehicle dynamics and sensors. LINEAR numerically determines a linear system model using nonlinear equations of motion and a user supplied linear or nonlinear aerodynamic model. The nonlinear equations of motion used are six-degree-of-freedom equations with stationary atmosphere and flat, nonrotating earth assumptions. LINEAR is capable of extracting both linearized engine effects, such as net thrust, torque, and gyroscopic effects and including these effects in the linear system model. The point at which this linear model is defined is determined either by completely specifying the state and control variables, or by specifying an analysis point on a trajectory and directing the program to determine the control variables and the remaining state variables. The system model determined by LINEAR consists of matrices for both the state and observation equations. The program has been designed to provide easy selection of state, control, and observation variables to be used in a particular model. Thus, the order of the system model is completely under user control. Further, the program provides the flexibility of allowing alternate formulations of both the state and observation equations. Data describing the aircraft and the test case is input to the program through a terminal or formatted data files. All data can be modified interactively from case to case. The aerodynamic model can be defined in two ways: a set of nondimensional stability and control derivatives for the flight point of
Digital broadband linearization of optical links.
Lam, Daniel; Fard, Ali M; Buckley, Brandon; Jalali, Bahram
2013-02-15
We present a digital postprocessing linearization technique to efficiently suppress dynamic distortions added to a wideband signal in an analog optical link. Our technique achieves up to 35 dB suppression of intermodulation distortions over multiple octaves of signal bandwidth. In contrast to conventional linearization methods, it does not require excessive analog bandwidth for performing digital correction. This is made possible by regenerating undesired distortions from the captured output, and subtracting it from the distorted digitized signal. Moreover, we experimentally demonstrate a record spurious-free dynamic range of 120 dB·Hz(2/3) over a 6 GHz electrical signal bandwidth. While our digital broadband linearization technique advances state-of-the-art optical links, it can also be applied to other nonlinear dynamic systems.
Hypocoercivity for linear kinetic equations conserving mass
Dolbeault, Jean
2015-02-03
We develop a new method for proving hypocoercivity for a large class of linear kinetic equations with only one conservation law. Local mass conservation is assumed at the level of the collision kernel, while transport involves a confining potential, so that the solution relaxes towards a unique equilibrium state. Our goal is to evaluate in an appropriately weighted $ L^2$ norm the exponential rate of convergence to the equilibrium. The method covers various models, ranging from diffusive kinetic equations like Vlasov-Fokker-Planck equations, to scattering models or models with time relaxation collision kernels corresponding to polytropic Gibbs equilibria, including the case of the linear Boltzmann model. In this last case and in the case of Vlasov-Fokker-Planck equations, any linear or superlinear growth of the potential is allowed. - See more at: http://www.ams.org/journals/tran/2015-367-06/S0002-9947-2015-06012-7/#sthash.ChjyK6rc.dpuf
Music improves verbal memory encoding while decreasing prefrontal cortex activity: an fNIRS study
Ferreri, Laura; Aucouturier, Jean-Julien; Muthalib, Makii; Bigand, Emmanuel; Bugaiska, Aurelia
2013-01-01
Listening to music engages the whole brain, thus stimulating cognitive performance in a range of non-purely musical activities such as language and memory tasks. This article addresses an ongoing debate on the link between music and memory for words. While evidence on healthy and clinical populations suggests that music listening can improve verbal memory in a variety of situations, it is still unclear what specific memory process is affected and how. This study was designed to explore the hypothesis that music specifically benefits the encoding part of verbal memory tasks, by providing a richer context for encoding and therefore less demand on the dorsolateral prefrontal cortex (DLPFC). Twenty-two healthy young adults were subjected to functional near-infrared spectroscopy (fNIRS) imaging of their bilateral DLPFC while encoding words in the presence of either a music or a silent background. Behavioral data confirmed the facilitating effect of music background during encoding on subsequent item recognition. fNIRS results revealed significantly greater activation of the left hemisphere during encoding (in line with the HERA model of memory lateralization) and a sustained, bilateral decrease of activity in the DLPFC in the music condition compared to silence. These findings suggest that music modulates the role played by the DLPFC during verbal encoding, and open perspectives for applications to clinical populations with prefrontal impairments, such as elderly adults or Alzheimer’s patients. PMID:24339807
Music improves verbal memory encoding while decreasing prefrontal cortex activity: an fNIRS study.
Ferreri, Laura; Aucouturier, Jean-Julien; Muthalib, Makii; Bigand, Emmanuel; Bugaiska, Aurelia
2013-01-01
Listening to music engages the whole brain, thus stimulating cognitive performance in a range of non-purely musical activities such as language and memory tasks. This article addresses an ongoing debate on the link between music and memory for words. While evidence on healthy and clinical populations suggests that music listening can improve verbal memory in a variety of situations, it is still unclear what specific memory process is affected and how. This study was designed to explore the hypothesis that music specifically benefits the encoding part of verbal memory tasks, by providing a richer context for encoding and therefore less demand on the dorsolateral prefrontal cortex (DLPFC). Twenty-two healthy young adults were subjected to functional near-infrared spectroscopy (fNIRS) imaging of their bilateral DLPFC while encoding words in the presence of either a music or a silent background. Behavioral data confirmed the facilitating effect of music background during encoding on subsequent item recognition. fNIRS results revealed significantly greater activation of the left hemisphere during encoding (in line with the HERA model of memory lateralization) and a sustained, bilateral decrease of activity in the DLPFC in the music condition compared to silence. These findings suggest that music modulates the role played by the DLPFC during verbal encoding, and open perspectives for applications to clinical populations with prefrontal impairments, such as elderly adults or Alzheimer's patients.
Music improves verbal memory encoding while decreasing prefrontal cortex activity: an fNIRS study
Directory of Open Access Journals (Sweden)
Laura eFerreri
2013-11-01
Full Text Available Listening to music engages the whole brain, thus stimulating cognitive performance in a range of non purely musical activities such as language and memory tasks. This article addresses an ongoing debate on the link between music and memory for words. While evidence on healthy and clinical populations suggests that music listening can improve verbal memory in a variety of situations, it is still unclear what specific memory process is affected and how. This study was designed to explore the hypothesis that music specifically benefits the encoding part of verbal memory tasks, by providing a richer context for encoding and therefore less demand on the dorsolateral prefrontal cortex (DLPFC. 22 healthy young adults were subjected to functional near-infrared spectroscopy (fNIRS imaging of their bilateral DLPFC while encoding words in the presence of either a music or a silent background. Behavioral data confirmed the facilitating effect of music background during encoding on subsequent item recognition. fNIRS results revealed significantly greater activation of the left hemisphere during encoding (in line with the HERA model of memory lateralization and a sustained, bilateral decrease of activity in the DLPFC in the music condition compared to silence. These findings suggest that music modulates the role played by the DLPFC during verbal encoding, and open perspectives for applications to clinical populations with prefrontal impairments, such as elderly adults or Alzheimer's patients.
Hemanth, M; Deoli, Shilpi; Raghuveer, H P; Rani, M S; Hegde, Chatura; Vedavathi, B
2015-09-01
Simulation of periodontal ligament (PDL) using non-linear finite element method (FEM) analysis gives better insight into understanding of the biology of tooth movement. The stresses in the PDL were evaluated for intrusion and lingual root torque using non-linear properties. A three-dimensional (3D) FEM model of the maxillary incisors was generated using Solidworks modeling software. Stresses in the PDL were evaluated for intrusive and lingual root torque movements by 3D FEM using ANSYS software. These stresses were compared with linear and non-linear analyses. For intrusive and lingual root torque movements, distribution of stress over the PDL was within the range of optimal stress value as proposed by Lee, but was exceeding the force system given by Proffit as optimum forces for orthodontic tooth movement with linear properties. When same force load was applied in non-linear analysis, stresses were more compared to linear analysis and were beyond the optimal stress range as proposed by Lee for both intrusive and lingual root torque. To get the same stress as linear analysis, iterations were done using non-linear properties and the force level was reduced. This shows that the force level required for non-linear analysis is lesser than that of linear analysis.
Approximation with positive linear operators and linear combinations
Gupta, Vijay
2017-01-01
This book presents a systematic overview of approximation by linear combinations of positive linear operators, a useful tool used to increase the order of approximation. Fundamental and recent results from the past decade are described with their corresponding proofs. The volume consists of eight chapters that provide detailed insight into the representation of monomials of the operators Ln , direct and inverse estimates for a broad class of positive linear operators, and case studies involving finite and unbounded intervals of real and complex functions. Strong converse inequalities of Type A in terminology of Ditzian–Ivanov for linear combinations of Bernstein and Bernstein–Kantorovich operators and various Voronovskaja-type estimates for some linear combinations are analyzed and explained. Graduate students and researchers in approximation theory will find the list of open problems in approximation of linear combinations useful. The book serves as a reference for graduate and postgraduate courses as we...
Frequency encoded auditory display of the critical tracking task
Stevenson, J.
1984-01-01
The use of auditory displays for selected cockpit instruments was examined. In auditory, visual, and combined auditory-visual compensatory displays of a vertical axis, critical tracking task were studied. The visual display encoded vertical error as the position of a dot on a 17.78 cm, center marked CRT. The auditory display encoded vertical error as log frequency with a six octave range; the center point at 1 kHz was marked by a 20-dB amplitude notch, one-third octave wide. Asymptotic performance on the critical tracking task was significantly better when using combined displays rather than the visual only mode. At asymptote, the combined display was slightly, but significantly, better than the visual only mode. The maximum controllable bandwidth using the auditory mode was only 60% of the maximum controllable bandwidth using the visual mode. Redundant cueing increased the rate of improvement of tracking performance, and the asymptotic performance level. This enhancement increases with the amount of redundant cueing used. This effect appears most prominent when the bandwidth of the forcing function is substantially less than the upper limit of controllability frequency.
Semantics of the Visual Environment Encoded in Parahippocampal Cortex.
Bonner, Michael F; Price, Amy Rose; Peelle, Jonathan E; Grossman, Murray
2016-03-01
Semantic representations capture the statistics of experience and store this information in memory. A fundamental component of this memory system is knowledge of the visual environment, including knowledge of objects and their associations. Visual semantic information underlies a range of behaviors, from perceptual categorization to cognitive processes such as language and reasoning. Here we examine the neuroanatomic system that encodes visual semantics. Across three experiments, we found converging evidence indicating that knowledge of verbally mediated visual concepts relies on information encoded in a region of the ventral-medial temporal lobe centered on parahippocampal cortex. In an fMRI study, this region was strongly engaged by the processing of concepts relying on visual knowledge but not by concepts relying on other sensory modalities. In a study of patients with the semantic variant of primary progressive aphasia (semantic dementia), atrophy that encompassed this region was associated with a specific impairment in verbally mediated visual semantic knowledge. Finally, in a structural study of healthy adults from the fMRI experiment, gray matter density in this region related to individual variability in the processing of visual concepts. The anatomic location of these findings aligns with recent work linking the ventral-medial temporal lobe with high-level visual representation, contextual associations, and reasoning through imagination. Together, this work suggests a critical role for parahippocampal cortex in linking the visual environment with knowledge systems in the human brain.
BLAS (Basic Linear Algebra Subroutines), Linear Algebra Modules and Supercomputers.
1984-12-31
Linear Algebra Subroutines (BLAS) and linear algebra software modules in general. The need for these extensions and new sets of modules is largely due...potential computin .p"er. The participants represented most active groups in ilecar algebral , ware an were about equally divided among industry...discussions. Section 2 describes seven proposals for linear algebra software modules and Sec- tion 3 describes four presentations on the use of such
Progress on $e^{+}e^{-}$ linear colliders
CERN. Geneva. Audiovisual Unit; Siemann, Peter
2002-01-01
Physics issues. The physics program will be reviewed for e+e- linear colliders in the TeV energy range. At these prospective facilities central issues of particle physics can be addressed, the problem of mass, unification and structure of space-time. In this context the two lectures will focus on analyses of the Higgs mechanism, supersymmetry and extra space dimensions. Moreover, high-precision studies of the top-quark and the gauge boson sector will be discussed. Combined with LHC results, a comprehensive picture can be developed of physics at the electroweak scale and beyond. Designs and technologies (R. Siemann - 29, 30, 31 May) The physics and technologies of high energy linear colliders will be reviewed. Fundamental concepts of linear colliders will be introduced. They will be discussed in: the context of the Stanford Linear Collider where many ideas changed and new ones were developed in response to operational experience. the requirements for future linear colliders. The different approaches for reac...
Minnesota Department of Natural Resources — This dataset delineates the spatial range of wild pheasant populations in Minnesota as of 2002 by dividing the MN state boundary into 2 units: pheasant range and...
DEFF Research Database (Denmark)
Bille, Philip; Gørtz, Inge Li
2014-01-01
We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results. We give efficient reductions for each of the above problems...... to a new problem, which we call substring range reporting. Hence, we unify the previous work by showing that we may restrict our attention to a single problem rather than studying each of the above problems individually. We show how to solve substring range reporting with optimal query time and little...... for substring range reporting generalize to substring range counting and substring range emptiness variants. We also obtain non-trivial time-space trade-offs for these problems. Our bounds for substring range reporting are based on a novel combination of suffix trees and range reporting data structures...
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Landt, Stephen G.; Marinov, Georgi K.; Kundaje, Anshul; Kheradpour, Pouya; Pauli, Florencia; Batzoglou, Serafim; Bernstein, Bradley E.; Bickel, Peter; Brown, James B.; Cayting, Philip; Chen, Yiwen; DeSalvo, Gilberto; Epstein, Charles; Fisher-Aylor, Katherine I.; Euskirchen, Ghia; Gerstein, Mark; Gertz, Jason; Hartemink, Alexander J.; Hoffman, Michael M.; Iyer, Vishwanath R.; Jung, Youngsook L.; Karmakar, Subhradip; Kellis, Manolis; Kharchenko, Peter V.; Li, Qunhua; Liu, Tao; Liu, X. Shirley; Ma, Lijia; Milosavljevic, Aleksandar; Myers, Richard M.; Park, Peter J.; Pazin, Michael J.; Perry, Marc D.; Raha, Debasish; Reddy, Timothy E.; Rozowsky, Joel; Shoresh, Noam; Sidow, Arend; Slattery, Matthew; Stamatoyannopoulos, John A.; Tolstorukov, Michael Y.; White, Kevin P.; Xi, Simon; Farnham, Peggy J.; Lieb, Jason D.; Wold, Barbara J.; Snyder, Michael
2012-01-01
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq) has become a valuable and widely used approach for mapping the genomic location of transcription-factor binding and histone modifications in living cells. Despite its widespread use, there are considerable differences in how these experiments are conducted, how the results are scored and evaluated for quality, and how the data and metadata are archived for public use. These practices affect the quality and utility of any global ChIP experiment. Through our experience in performing ChIP-seq experiments, the ENCODE and modENCODE consortia have developed a set of working standards and guidelines for ChIP experiments that are updated routinely. The current guidelines address antibody validation, experimental replication, sequencing depth, data and metadata reporting, and data quality assessment. We discuss how ChIP quality, assessed in these ways, affects different uses of ChIP-seq data. All data sets used in the analysis have been deposited for public viewing and downloading at the ENCODE (http://encodeproject.org/ENCODE/) and modENCODE (http://www.modencode.org/) portals. PMID:22955991
Linear programming algorithms and applications
Vajda, S
1981-01-01
This text is based on a course of about 16 hours lectures to students of mathematics, statistics, and/or operational research. It is intended to introduce readers to the very wide range of applicability of linear programming, covering problems of manage ment, administration, transportation and a number of other uses which are mentioned in their context. The emphasis is on numerical algorithms, which are illustrated by examples of such modest size that the solutions can be obtained using pen and paper. It is clear that these methods, if applied to larger problems, can also be carried out on automatic (electronic) computers. Commercially available computer packages are, in fact, mainly based on algorithms explained in this book. The author is convinced that the user of these algorithms ought to be knowledgeable about the underlying theory. Therefore this volume is not merely addressed to the practitioner, but also to the mathematician who is interested in relatively new developments in algebraic theory and in...
Convolutional over Recurrent Encoder for Neural Machine Translation
National Research Council Canada - National Science Library
Praveen Dakwale; Christof Monz
2017-01-01
...) called encoder and the target words are predicted using another RNN known as decoder. Recently, various models have been proposed which replace the RNN encoder with a convolutional neural network (CNN...
Evaluating standard terminologies for encoding allergy information.
Goss, Foster R; Zhou, Li; Plasek, Joseph M; Broverman, Carol; Robinson, George; Middleton, Blackford; Rocha, Roberto A
2013-01-01
Allergy documentation and exchange are vital to ensuring patient safety. This study aims to analyze and compare various existing standard terminologies for representing allergy information. Five terminologies were identified, including the Systemized Nomenclature of Medical Clinical Terms (SNOMED CT), National Drug File-Reference Terminology (NDF-RT), Medication Dictionary for Regulatory Activities (MedDRA), Unique Ingredient Identifier (UNII), and RxNorm. A qualitative analysis was conducted to compare desirable characteristics of each terminology, including content coverage, concept orientation, formal definitions, multiple granularities, vocabulary structure, subset capability, and maintainability. A quantitative analysis was also performed to compare the content coverage of each terminology for (1) common food, drug, and environmental allergens and (2) descriptive concepts for common drug allergies, adverse reactions (AR), and no known allergies. Our qualitative results show that SNOMED CT fulfilled the greatest number of desirable characteristics, followed by NDF-RT, RxNorm, UNII, and MedDRA. Our quantitative results demonstrate that RxNorm had the highest concept coverage for representing drug allergens, followed by UNII, SNOMED CT, NDF-RT, and MedDRA. For food and environmental allergens, UNII demonstrated the highest concept coverage, followed by SNOMED CT. For representing descriptive allergy concepts and adverse reactions, SNOMED CT and NDF-RT showed the highest coverage. Only SNOMED CT was capable of representing unique concepts for encoding no known allergies. The proper terminology for encoding a patient's allergy is complex, as multiple elements need to be captured to form a fully structured clinical finding. Our results suggest that while gaps still exist, a combination of SNOMED CT and RxNorm can satisfy most criteria for encoding common allergies and provide sufficient content coverage.
Greedy controllability of finite dimensional linear systems
Lazar, Martin; Zuazua, Enrique
2016-01-01
We analyse the problem of controllability for parameter-dependent linear finite-dimensional systems. The goal is to identify the most distinguished realisations of those parameters so to better describe or approximate the whole range of controls. We adapt recent results on greedy and weak greedy algorithms for parameter depending PDEs or, more generally, abstract equations in Banach spaces. Our results lead to optimal approximation procedures that, in particular, perform better than simply sa...
Variable Control Charts - Linear Failure Rate Distribution
Directory of Open Access Journals (Sweden)
Metlapalli Chaitanya Priya
2017-12-01
Full Text Available The well known Linear Failure Rate Distribution (LFRD is considered. A process variate following LFRD is thought of in order to develop control charts for subgroup mean and subgroup range. In view of the limitations on LFRD the theoretical control limits are obtained through some approximations and the resulting control chart limits are worked out. Comparisons with the control limits of similar variable control charts is also presented.
Survey of linear magnetic fusion reactors
Energy Technology Data Exchange (ETDEWEB)
Krakowski, R.A.
1978-01-01
The promise and problems of Linear Magnetic Fusion (LMF) for the generation of electrical power are surveyed. A number of axial confinement schemes are described and compared on an n tau basis. Likewise, the range of heating methods is described. The results of seven conceptual LMF reactor design studies are summarized with an emphasis on the interfaces between reactor operation, confinement scheme, and heating methods.
Purcaru, Elena
2012-01-01
The paper presents a solution for endcoding/decoding DNA information in 2D barcodes. First part focuses on the existing techniques and symbologies in 2D barcodes field. The 2D barcode PDF417 is presented as starting point. The adaptations and optimizations on PDF417 and on DataMatrix lead to the solution - DNA2DBC - DeoxyriboNucleic Acid Two Dimensional Barcode. The second part shows the DNA2DBC encoding/decoding process step by step. In conclusions are enumerated the most important features of 2D barcode implementation for DNA.
Rapidly-Indexing Incremental-Angle Encoder
Christon, Philip R.; Meyer, Wallace W.
1989-01-01
Optoelectronic system measures relative angular position of shaft or other device to be turned, also measures absolute angular position after device turned through small angle. Relative angular position measured with fine resolution by optoelectronically counting finely- and uniformly-spaced light and dark areas on encoder disk as disk turns past position-sensing device. Also includes track containing coarsely- and nonuniformly-spaced light and dark areas, angular widths varying in proportion to absolute angular position. This second track provides gating and indexing signal.
Equivalent linearization of nonlinear forces
Meng, Guang; Xue, Zhongqing
1987-07-01
A method used for equivalent linearization of the two orthogonal squeeze-film forces is extended here to the general case of n degrees of freedom and n components of nonlinear forces, and the expressions for equivalent linear coefficients are derived. Nonlinear forces can be linearized by the methods of Fourier expansion, active and reactive powers, or mean-square error. The n components of nonlinear forces can all be expressed formally as the sum of an average force, a linear spring force, and a linear damping force. This paper also gives a flow chart for calculating the steady-state responses of a nonlinear system with many degrees of freedom, using the method of equivalent linearization. The resulting saving in computation time is demonstrated by a numerical example of a flexible rotor-bearing system with a noncentralized squeeze-film damper.
Efficient Searching with Linear Constraints
DEFF Research Database (Denmark)
Agarwal, Pankaj K.; Arge, Lars Allan; Erickson, Jeff
2000-01-01
We show how to preprocess a set S of points in d into an external memory data structure that efficiently supports linear-constraint queries. Each query is in the form of a linear constraint xd a0+∑d−1i=1 aixi; the data structure must report all the points of S that satisfy the constraint...... space and answers linear-constraint queries using an optimal number of I/Os in the worst case. For d=3, we present a near-linear-size data structure that answers queries using an optimal number of I/Os on the average. We present linear-size data structures that can answer d-dimensional linear-constraint...
Polymeric peptide pigments with sequence-encoded properties
Energy Technology Data Exchange (ETDEWEB)
Lampel, Ayala; McPhee, Scott A.; Park, Hang-Ah; Scott, Gary G.; Humagain, Sunita; Hekstra, Doeke R.; Yoo, Barney; Frederix, Pim W. J. M.; Li, Tai-De; Abzalimov, Rinat R.; Greenbaum, Steven G.; Tuttle, Tell; Hu, Chunhua; Bettinger, Christopher J.; Ulijn, Rein V.
2017-06-08
Melanins are a family of heterogeneous polymeric pigments that provide ultraviolet (UV) light protection, structural support, coloration, and free radical scavenging. Formed by oxidative oligomerization of catecholic small molecules, the physical properties of melanins are influenced by covalent and noncovalent disorder. We report the use of tyrosine-containing tripeptides as tunable precursors for polymeric pigments. In these structures, phenols are presented in a (supra-)molecular context dictated by the positions of the amino acids in the peptide sequence. Oxidative polymerization can be tuned in a sequence-dependent manner, resulting in peptide sequence–encoded properties such as UV absorbance, morphology, coloration, and electrochemical properties over a considerable range. Short peptides have low barriers to application and can be easily scaled, suggesting near-term applications in cosmetics and biomedicine.
Linear Programming and Network Flows
Bazaraa, Mokhtar S; Sherali, Hanif D
2011-01-01
The authoritative guide to modeling and solving complex problems with linear programming-extensively revised, expanded, and updated The only book to treat both linear programming techniques and network flows under one cover, Linear Programming and Network Flows, Fourth Edition has been completely updated with the latest developments on the topic. This new edition continues to successfully emphasize modeling concepts, the design and analysis of algorithms, and implementation strategies for problems in a variety of fields, including industrial engineering, management science, operations research
Dual beam encoded extended fractional Fourier transform security ...
Indian Academy of Sciences (India)
2015-11-27
Nov 27, 2015 ... This paper describes a simple method for making dual beam encoded extended fractional Fourier transform (EFRT) security holograms. The hologram possesses different stages of encoding so that security features are concealed and remain invisible to the counterfeiter. These concealed and encoded ...
Linear operators for quantum mechanics
Jordan, Thomas F
1969-01-01
This compact treatment highlights the logic and simplicity of the mathematical structure of quantum mechanics. Suitable for advanced undergraduates and graduate students, it treats the language of quantum mechanics as expressed in the mathematics of linear operators.Originally oriented toward atomic physics, quantum mechanics became a basic language for solid-state, nuclear, and particle physics. Its grammar consists of the mathematics of linear operators, and with this text, students will find it easier to understand and use the language of physics. Topics include linear spaces and linear fun
Elementary linear programming with applications
Kolman, Bernard
1995-01-01
Linear programming finds the least expensive way to meet given needs with available resources. Its results are used in every area of engineering and commerce: agriculture, oil refining, banking, and air transport. Authors Kolman and Beck present the basic notions of linear programming and illustrate how they are used to solve important common problems. The software on the included disk leads students step-by-step through the calculations. The Second Edition is completely revised and provides additional review material on linear algebra as well as complete coverage of elementary linear program
DEFF Research Database (Denmark)
Bille, Philip; Gørtz, Inge Li
2011-01-01
We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results. – We give efficient reductions for each of the above problems...... to a new problem, which we call substring range reporting. Hence, we unify the previous work by showing that we may restrict our attention to a single problem rather than studying each of the above problems individually. – We show how to solve substring range reporting with optimal query time and little...... range reporting are based on a novel combination of suffix trees and range reporting data structures. The reductions are simple and general and may apply to other combinations of string indexing with range reporting....
Non-linear finite element analysis in structural mechanics
Rust, Wilhelm
2015-01-01
This monograph describes the numerical analysis of non-linearities in structural mechanics, i.e. large rotations, large strain (geometric non-linearities), non-linear material behaviour, in particular elasto-plasticity as well as time-dependent behaviour, and contact. Based on that, the book treats stability problems and limit-load analyses, as well as non-linear equations of a large number of variables. Moreover, the author presents a wide range of problem sets and their solutions. The target audience primarily comprises advanced undergraduate and graduate students of mechanical and civil engineering, but the book may also be beneficial for practising engineers in industry.
Ultrafast Long-Distance Quantum Communication with Static Linear Optics.
Ewert, Fabian; Bergmann, Marcel; van Loock, Peter
2016-11-18
We propose a projection measurement onto encoded Bell states with a static network of linear optical elements. By increasing the size of the quantum error correction code, both Bell measurement efficiency and photon-loss tolerance can be made arbitrarily high at the same time. As a main application, we show that all-optical quantum communication over large distances with communication rates similar to those of classical communication is possible solely based on local state teleportations using optical sources of encoded Bell states, fixed arrays of beam splitters, and photon detectors. As another application, generalizing state teleportation to gate teleportation for quantum computation, we find that in order to achieve universality the intrinsic loss tolerance must be sacrificed and a minimal amount of feedforward has to be added.
Linear optical quantum computing in a single spatial mode.
Humphreys, Peter C; Metcalf, Benjamin J; Spring, Justin B; Moore, Merritt; Jin, Xian-Min; Barbieri, Marco; Kolthammer, W Steven; Walmsley, Ian A
2013-10-11
We present a scheme for linear optical quantum computing using time-bin-encoded qubits in a single spatial mode. We show methods for single-qubit operations and heralded controlled-phase (cphase) gates, providing a sufficient set of operations for universal quantum computing with the Knill-Laflamme-Milburn [Nature (London) 409, 46 (2001)] scheme. Our protocol is suited to currently available photonic devices and ideally allows arbitrary numbers of qubits to be encoded in the same spatial mode, demonstrating the potential for time-frequency modes to dramatically increase the quantum information capacity of fixed spatial resources. As a test of our scheme, we demonstrate the first entirely single spatial mode implementation of a two-qubit quantum gate and show its operation with an average fidelity of 0.84±0.07.
Sorini, D.
2017-04-01
Measuring the clustering of galaxies from surveys allows us to estimate the power spectrum of matter density fluctuations, thus constraining cosmological models. This requires careful modelling of observational effects to avoid misinterpretation of data. In particular, signals coming from different distances encode information from different epochs. This is known as ``light-cone effect'' and is going to have a higher impact as upcoming galaxy surveys probe larger redshift ranges. Generalising the method by Feldman, Kaiser and Peacock (1994) [1], I define a minimum-variance estimator of the linear power spectrum at a fixed time, properly taking into account the light-cone effect. An analytic expression for the estimator is provided, and that is consistent with the findings of previous works in the literature. I test the method within the context of the Halofit model, assuming Planck 2014 cosmological parameters [2]. I show that the estimator presented recovers the fiducial linear power spectrum at present time within 5% accuracy up to k ~ 0.80 h Mpc-1 and within 10% up to k ~ 0.94 h Mpc-1, well into the non-linear regime of the growth of density perturbations. As such, the method could be useful in the analysis of the data from future large-scale surveys, like Euclid.
Federal Laboratory Consortium — Facility consists of a folded compact antenna range including a computer controlled three axis position table, parabolic reflector and RF sources for the measurement...
Dryden Aeronautical Test Range
Federal Laboratory Consortium — Recently redesignated to honor Dr. Hugh L. Dryden, NASA's Dryden Aeronautical Test Range (DATR) supports aerospace flight research and technology integration, space...
Artificial neural networks using complex numbers and phase encoded weights.
Michel, Howard E; Awwal, Abdul Ahad S
2010-04-01
The model of a simple perceptron using phase-encoded inputs and complex-valued weights is proposed. The aggregation function, activation function, and learning rule for the proposed neuron are derived and applied to Boolean logic functions and simple computer vision tasks. The complex-valued neuron (CVN) is shown to be superior to traditional perceptrons. An improvement of 135% over the theoretical maximum of 104 linearly separable problems (of three variables) solvable by conventional perceptrons is achieved without additional logic, neuron stages, or higher order terms such as those required in polynomial logic gates. The application of CVN in distortion invariant character recognition and image segmentation is demonstrated. Implementation details are discussed, and the CVN is shown to be very attractive for optical implementation since optical computations are naturally complex. The cost of the CVN is less in all cases than the traditional neuron when implemented optically. Therefore, all the benefits of the CVN can be obtained without additional cost. However, on those implementations dependent on standard serial computers, CVN will be more cost effective only in those applications where its increased power can offset the requirement for additional neurons.
Encoding of motor skill in the corticomuscular system of musicians.
Gentner, Reinhard; Gorges, Susanne; Weise, David; aufm Kampe, Kristin; Buttmann, Mathias; Classen, Joseph
2010-10-26
How motor skills are stored in the nervous system represents a fundamental question in neuroscience. Although musical motor skills are associated with a variety of adaptations [1-3], it remains unclear how these changes are linked to the known superior motor performance of expert musicians. Here we establish a direct and specific relationship between the functional organization of the corticomuscular system and skilled musical performance. Principal component analysis was used to identify joint correlation patterns in finger movements evoked by transcranial magnetic stimulation over the primary motor cortex while subjects were at rest. Linear combinations of a selected subset of these patterns were used to reconstruct active instrumental playing or grasping movements. Reconstruction quality of instrumental playing was superior in skilled musicians compared to musically untrained subjects, displayed taxonomic specificity for the trained movement repertoire, and correlated with the cumulated long-term training exposure, but not with the recent past training history. In violinists, the reconstruction quality of grasping movements correlated negatively with the long-term training history of violin playing. Our results indicate that experience-dependent motor skills are specifically encoded in the functional organization of the primary motor cortex and its efferent system and are consistent with a model of skill coding by a modular neuronal architecture [4]. Copyright © 2010 Elsevier Ltd. All rights reserved.
175 Years of Linear Programming
Indian Academy of Sciences (India)
The announcement, by L G Khachiyan, of the poly- nomial solvability of linear programming by the el- lipsoid method, followed by the probabilistic anal- yses of the simplex method in the early 1980's left researchers in linear programming with a dilemma. We had one method that was good in a theoreti- cal sense but poor in ...
175 Years of Linear Programming
Indian Academy of Sciences (India)
The theory of flows in networks began to evolve in the early 1950's. The various linear optimisation questions that could be asked of flows in conserv- ing networks turned out to be neat combinatorial specialisations of linear programming. The simplex method (and its variants) turned out to have very pretty combinatorial ...
Linear contextual modal type theory
DEFF Research Database (Denmark)
Schack-Nielsen, Anders; Schürmann, Carsten
Abstract. When one implements a logical framework based on linear type theory, for example the Celf system [?], one is immediately con- fronted with questions about their equational theory and how to deal with logic variables. In this paper, we propose linear contextual modal type theory that gives...
Linearization of hyperbolic resonant germs
Bonckaert, P; Naudot, [No Value; Yang, JH
In this paper we develop an explicit normal form conjugacy procedure, called an 'LMT normal form', to study linearization of a smooth vector field in the neighbourhood of a hyperbolic equilibrium point with resonant eigenvalues. We give an asymptotic expression for such a linearization in terms of
Linear Quadratic Games : An Overview
Engwerda, J.C.
2006-01-01
In this paper we review some basic results on linear quadratic differential games.We consider both the cooperative and non-cooperative case.For the non-cooperative game we consider the open-loop and (linear) feedback information structure.Furthermore the effect of adding uncertainty is
Linear Programming across the Curriculum
Yoder, S. Elizabeth; Kurz, M. Elizabeth
2015-01-01
Linear programming (LP) is taught in different departments across college campuses with engineering and management curricula. Modeling an LP problem is taught in every linear programming class. As faculty teaching in Engineering and Management departments, the depth to which teachers should expect students to master this particular type of…
Introduction to coordinated linear systems
Kempker, P.L.
2014-01-01
This chapter serves as an introduction to the concepts of coordinated linear systems, in formal as well as intuitive terms. The concept of a coordinated linear system is introduced and formulated, and some basic properties are derived, providing both a motivaton and a formal basis for the following
Linear Algebra and Image Processing
Allali, Mohamed
2010-01-01
We use the computing technology digital image processing (DIP) to enhance the teaching of linear algebra so as to make the course more visual and interesting. Certainly, this visual approach by using technology to link linear algebra to DIP is interesting and unexpected to both students as well as many faculty. (Contains 2 tables and 11 figures.)
DEFF Research Database (Denmark)
Andersen, Steffen; Harrison, Glenn W.; Hole, Arne Risa
2012-01-01
We develop an extension of the familiar linear mixed logit model to allow for the direct estimation of parametric non-linear functions defined over structural parameters. Classic applications include the estimation of coefficients of utility functions to characterize risk attitudes and discountin...
Campagnoli, Patrizia; Petris, Giovanni
2009-01-01
State space models have gained tremendous popularity in as disparate fields as engineering, economics, genetics and ecology. Introducing general state space models, this book focuses on dynamic linear models, emphasizing their Bayesian analysis. It illustrates the fundamental steps needed to use dynamic linear models in practice, using R package.
Introduction to generalized linear models
Dobson, Annette J
2008-01-01
Introduction Background Scope Notation Distributions Related to the Normal Distribution Quadratic Forms Estimation Model Fitting Introduction Examples Some Principles of Statistical Modeling Notation and Coding for Explanatory Variables Exponential Family and Generalized Linear Models Introduction Exponential Family of Distributions Properties of Distributions in the Exponential Family Generalized Linear Models Examples Estimation Introduction Example: Failure Times for Pressure Vessels Maximum Likelihood Estimation Poisson Regression Example Inference Introduction Sampling Distribution for Score Statistics Taylor Series Approximations Sampling Distribution for MLEs Log-Likelihood Ratio Statistic Sampling Distribution for the Deviance Hypothesis Testing Normal Linear Models Introduction Basic Results Multiple Linear Regression Analysis of Variance Analysis of Covariance General Linear Models Binary Variables and Logistic Regression Probability Distributions ...
Controllability analysis of decentralised linear controllers for polymeric fuel cells
Energy Technology Data Exchange (ETDEWEB)
Serra, Maria; Aguado, Joaquin; Ansede, Xavier; Riera, Jordi [Institut de Robotica i Informatica Industrial, Universitat Politecnica de Catalunya - Consejo Superior de Investigaciones Cientificas, C. Llorens i Artigas 4, 08028 Barcelona (Spain)
2005-10-10
This work deals with the control of polymeric fuel cells. It includes a linear analysis of the system at different operating points, the comparison and selection of different control structures, and the validation of the controlled system by simulation. The work is based on a complex non linear model which has been linearised at several operating points. The linear analysis tools used are the Morari resiliency index, the condition number, and the relative gain array. These techniques are employed to compare the controllability of the system with different control structures and at different operating conditions. According to the results, the most promising control structures are selected and their performance with PI based diagonal controllers is evaluated through simulations with the complete non linear model. The range of operability of the examined control structures is compared. Conclusions indicate good performance of several diagonal linear controllers. However, very few have a wide operability range. (author)
Genetic parameters for racing records in trotters using linear and generalized linear models.
Suontama, M; van der Werf, J H J; Juga, J; Ojala, M
2012-09-01
Heritability and repeatability and genetic and phenotypic correlations were estimated for trotting race records with linear and generalized linear models using 510,519 records on 17,792 Finnhorses and 513,161 records on 25,536 Standardbred trotters. Heritability and repeatability were estimated for single racing time and earnings traits with linear models, and logarithmic scale was used for racing time and fourth-root scale for earnings to correct for nonnormality. Generalized linear models with a gamma distribution were applied for single racing time and with a multinomial distribution for single earnings traits. In addition, genetic parameters for annual earnings were estimated with linear models on the observed and fourth-root scales. Racing success traits of single placings, winnings, breaking stride, and disqualifications were analyzed using generalized linear models with a binomial distribution. Estimates of heritability were greatest for racing time, which ranged from 0.32 to 0.34. Estimates of heritability were low for single earnings with all distributions, ranging from 0.01 to 0.09. Annual earnings were closer to normal distribution than single earnings. Heritability estimates were moderate for annual earnings on the fourth-root scale, 0.19 for Finnhorses and 0.27 for Standardbred trotters. Heritability estimates for binomial racing success variables ranged from 0.04 to 0.12, being greatest for winnings and least for breaking stride. Genetic correlations among racing traits were high, whereas phenotypic correlations were mainly low to moderate, except correlations between racing time and earnings were high. On the basis of a moderate heritability and moderate to high repeatability for racing time and annual earnings, selection of horses for these traits is effective when based on a few repeated records. Because of high genetic correlations, direct selection for racing time and annual earnings would also result in good genetic response in racing success.
DEFF Research Database (Denmark)
Hansen, Thomas Dueholm; Miltersen, Peter Bro; Sørensen, Troels Bjerre
2008-01-01
size (and doubly exponential in its depth). We also provide techniques that yield concrete bounds for unbalanced game trees and apply these to estimate the Range of Skill of Tic-Tac-Toe and Heads-Up Limit Texas Hold'em Poker. In particular, we show that the Range of Skill of Tic-Tac-Toe is more than...
Logan, J. R.; Pulvermacher, M. K.
1991-01-01
Range Scheduling Aid (RSA) is presented in the form of the viewgraphs. The following subject areas are covered: satellite control network; current and new approaches to range scheduling; MITRE tasking; RSA features; RSA display; constraint based analytic capability; RSA architecture; and RSA benefits.
Stickel, L.F.; King, John A.
1968-01-01
The concept of home range was expressed by Seton (1909) in the term 'home region,' which Burr (1940, 1943) clarified with a definition of home range and exemplified in a definitive study of Peromyscus in the field. Burt pointed out the ever-changing characteristics of home-range area and the consequent absence of boundaries in the usual sense--a finding verified by investigators thereafter. In the studies summarized in this paper, sizes of home ranges of Peromyscus varied within two magnitudes, approximately from 0.1 acre to ten acres, in 34 studies conducted in a variety of habitats from the seaside dunes of Florida to the Alaskan forests. Variation in sizes of home ranges was correlated with both environmental and physiological factors; with habitat it was conspicuous, both in the same and different regions. Food supply also was related to size of home range, both seasonally and in relation to habitat. Home ranges generally were smallest in winter and largest in spring, at the onset of the breeding season. Activity and size also were affected by changes in weather. Activity was least when temperatures were low and nights were bright. Effects of rainfall were variable. Sizes varied according to sex and age; young mice remained in the parents' range until they approached maturity, when they began to travel more widely. Adult males commonly had larger home ranges than females, although there were a number of exceptions. An inverse relationship between population density and size of home range was shown in several studies and probably is the usual relationship. A basic need for activity and exploration also appeared to influence size of home range. Behavior within the home range was discussed in terms of travel patterns, travels in relation to home sites and refuges, territory, and stability of size of home range. Travels within the home range consisted of repeated use of well-worn trails to sites of food, shelter, and refuge, plus more random exploratory travels
DNA-Encoded Solid-Phase Synthesis: Encoding Language Design and Complex Oligomer Library Synthesis.
MacConnell, Andrew B; McEnaney, Patrick J; Cavett, Valerie J; Paegel, Brian M
2015-09-14
The promise of exploiting combinatorial synthesis for small molecule discovery remains unfulfilled due primarily to the "structure elucidation problem": the back-end mass spectrometric analysis that significantly restricts one-bead-one-compound (OBOC) library complexity. The very molecular features that confer binding potency and specificity, such as stereochemistry, regiochemistry, and scaffold rigidity, are conspicuously absent from most libraries because isomerism introduces mass redundancy and diverse scaffolds yield uninterpretable MS fragmentation. Here we present DNA-encoded solid-phase synthesis (DESPS), comprising parallel compound synthesis in organic solvent and aqueous enzymatic ligation of unprotected encoding dsDNA oligonucleotides. Computational encoding language design yielded 148 thermodynamically optimized sequences with Hamming string distance ≥ 3 and total read length bases for facile sequencing. Ligation is efficient (70% yield), specific, and directional over 6 encoding positions. A series of isomers served as a testbed for DESPS's utility in split-and-pool diversification. Single-bead quantitative PCR detected 9 × 10(4) molecules/bead and sequencing allowed for elucidation of each compound's synthetic history. We applied DESPS to the combinatorial synthesis of a 75,645-member OBOC library containing scaffold, stereochemical and regiochemical diversity using mixed-scale resin (160-μm quality control beads and 10-μm screening beads). Tandem DNA sequencing/MALDI-TOF MS analysis of 19 quality control beads showed excellent agreement (ppt) between DNA sequence-predicted mass and the observed mass. DESPS synergistically unites the advantages of solid-phase synthesis and DNA encoding, enabling single-bead structural elucidation of complex compounds and synthesis using reactions normally considered incompatible with unprotected DNA. The widespread availability of inexpensive oligonucleotide synthesis, enzymes, DNA sequencing, and PCR make
Premotor and Motor Cortices Encode Reward.
Directory of Open Access Journals (Sweden)
Pavan Ramkumar
Full Text Available Rewards associated with actions are critical for motivation and learning about the consequences of one's actions on the world. The motor cortices are involved in planning and executing movements, but it is unclear whether they encode reward over and above limb kinematics and dynamics. Here, we report a categorical reward signal in dorsal premotor (PMd and primary motor (M1 neurons that corresponds to an increase in firing rates when a trial was not rewarded regardless of whether or not a reward was expected. We show that this signal is unrelated to error magnitude, reward prediction error, or other task confounds such as reward consumption, return reach plan, or kinematic differences across rewarded and unrewarded trials. The availability of reward information in motor cortex is crucial for theories of reward-based learning and motivational influences on actions.
Radiofrequency encoded angular-resolved light scattering
DEFF Research Database (Denmark)
Buckley, Brandon W.; Akbari, Najva; Diebold, Eric D.
2015-01-01
The sensitive, specific, and label-free classification of microscopic cells and organisms is one of the outstanding problems in biology. Today, instruments such as the flow cytometer use a combination of light scatter measurements at two distinct angles to infer the size and internal complexity...... of cells at rates of more than 10,000 per second. However, by examining the entire angular light scattering spectrum it is possible to classify cells with higher resolution and specificity. Current approaches to performing these angular spectrum measurements all have significant throughput limitations...... Encoded Angular-resolved Light Scattering (REALS), this technique multiplexes angular light scattering in the radiofrequency domain, such that a single photodetector captures the entire scattering spectrum from a particle over approximately 100 discrete incident angles on a single shot basis. As a proof...
Reciprocity in Linear Deterministic Networks under Linear Coding
Raja, Adnan; Viswanath, Pramod
2009-01-01
The linear deterministic model has been used recently to get a first order understanding of many wireless communication network problems. In many of these cases, it has been pointed out that the capacity regions of the network and its reciprocal (where the communication links are reversed and the roles of the sources and the destinations are swapped) are the same. In this paper, we consider a linear deterministic communication network with multiple unicast information flows. For this model and under the restriction to the class of linear coding, we show that the rate regions for a network and its reciprocal are the same. This can be viewed as a generalization of the linear reversibility of wireline networks, already known in the network coding literature.
Fast color flow mode imaging using plane wave excitation and temporal encoding
DEFF Research Database (Denmark)
Udesen, Jesper; Gran, Fredrik; Jensen, Jørgen Arendt
2005-01-01
In conventional ultrasound color flow mode imaging, a large number (~500) of pulses have to be emitted in order to form a complete velocity map. This lowers the frame-rate and temporal resolution. A method for color flow imaging in which a few (~10) pulses have to be emitted to form a complete...... velocity image is presented. The method is based on using a plane wave excitation with temporal encoding to compensate for the decreased SNR, resulting from the lack of focusing. The temporal encoding is done with a linear frequency modulated signal. To decrease lateral sidelobes, a Tukey window is used...... as apodization on the transmitting aperture. The data are beamformed along the direction of the flow, and the velocity is found by 1-D cross correlation of these data. First the method is evaluated in simulations using the Field II program. Secondly, the method is evaluated using the experimental scanner RASMUS...
Efficient quantum computation in a network with probabilistic gates and logical encoding
DEFF Research Database (Denmark)
Borregaard, J.; Sørensen, A. S.; Cirac, J. I.
2017-01-01
An approach to efficient quantum computation with probabilistic gates is proposed and analyzed in both a local and nonlocal setting. It combines heralded gates previously studied for atom or atomlike qubits with logical encoding from linear optical quantum computation in order to perform high......-fidelity quantum gates across a quantum network. The error-detecting properties of the heralded operations ensure high fidelity while the encoding makes it possible to correct for failed attempts such that deterministic and high-quality gates can be achieved. Importantly, this is robust to photon loss, which...... is typically the main obstacle to photonic-based quantum information processing. Overall this approach opens a path toward quantum networks with atomic nodes and photonic links....
Decoding the `Nature Encoded' Messages for Distributed Energy Generation Control in Microgrid
Gong, Shuping; Lai, Lifeng; Qiu, Robert C
2010-01-01
The communication for the control of distributed energy generation (DEG) in microgrid is discussed. Due to the requirement of realtime transmission, weak or no explicit channel coding is used for the message of system state. To protect the reliability of the uncoded or weakly encoded messages, the system dynamics are considered as a `nature encoding' similar to convolution code, due to its redundancy in time. For systems with or without explicit channel coding, two decoding procedures based on Kalman filtering and Pearl's Belief Propagation, in a similar manner to Turbo processing in traditional data communication systems, are proposed. Numerical simulations have demonstrated the validity of the schemes, using a linear model of electric generator dynamic system.
Directory of Open Access Journals (Sweden)
Filip Čertík
2016-01-01
Full Text Available This paper presents a possible simulation of negative effects in the optical transmission medium and an analysis for the utilization of different signal processing techniques at the optical signal transmission. An attention is focused on the high data rate signal transmission in the optical fiber influenced by linear and nonlinear environmental effects presented by the prepared simulation model. The analysis includes possible utilization of OOK, BPSK, DBPSK, BFSK, QPSK, DQPSK, 8PSK, and 16QAM modulation techniques together with RS, BCH, and LDPC encoding techniques for the signal transmission in the optical fiber. Moreover, the prepared simulation model is compared with real optical transmission systems. In the final part, a comparison of the selected modulation techniques with different encoding techniques and their implementation in real transmission systems is shown.
A new approach of binary addition and subtraction by non-linear ...
Indian Academy of Sciences (India)
accommodating the spatial input encoding system. Keywords. Non-linear material; optical computing; binary arithmetic; optical logic op- erations. PACS Nos 42.65.-k; 42.70.-a; 42.79.Ta; 42.82.Gw. 1. Introduction. All-optical parallel computation uses the parallelism of optics with all its possibili- ties to overcome the limitations ...
Ferencz, Donald C.; Viterna, Larry A.
1991-01-01
ALPS is a computer program which can be used to solve general linear program (optimization) problems. ALPS was designed for those who have minimal linear programming (LP) knowledge and features a menu-driven scheme to guide the user through the process of creating and solving LP formulations. Once created, the problems can be edited and stored in standard DOS ASCII files to provide portability to various word processors or even other linear programming packages. Unlike many math-oriented LP solvers, ALPS contains an LP parser that reads through the LP formulation and reports several types of errors to the user. ALPS provides a large amount of solution data which is often useful in problem solving. In addition to pure linear programs, ALPS can solve for integer, mixed integer, and binary type problems. Pure linear programs are solved with the revised simplex method. Integer or mixed integer programs are solved initially with the revised simplex, and the completed using the branch-and-bound technique. Binary programs are solved with the method of implicit enumeration. This manual describes how to use ALPS to create, edit, and solve linear programming problems. Instructions for installing ALPS on a PC compatible computer are included in the appendices along with a general introduction to linear programming. A programmers guide is also included for assistance in modifying and maintaining the program.
Complex-linear invariants of biochemical networks.
Karp, Robert L; Pérez Millán, Mercedes; Dasgupta, Tathagata; Dickenstein, Alicia; Gunawardena, Jeremy
2012-10-21
The nonlinearities found in molecular networks usually prevent mathematical analysis of network behaviour, which has largely been studied by numerical simulation. This can lead to difficult problems of parameter determination. However, molecular networks give rise, through mass-action kinetics, to polynomial dynamical systems, whose steady states are zeros of a set of polynomial equations. These equations may be analysed by algebraic methods, in which parameters are treated as symbolic expressions whose numerical values do not have to be known in advance. For instance, an "invariant" of a network is a polynomial expression on selected state variables that vanishes in any steady state. Invariants have been found that encode key network properties and that discriminate between different network structures. Although invariants may be calculated by computational algebraic methods, such as Gröbner bases, these become computationally infeasible for biologically realistic networks. Here, we exploit Chemical Reaction Network Theory (CRNT) to develop an efficient procedure for calculating invariants that are linear combinations of "complexes", or the monomials coming from mass action. We show how this procedure can be used in proving earlier results of Horn and Jackson and of Shinar and Feinberg for networks of deficiency at most one. We then apply our method to enzyme bifunctionality, including the bacterial EnvZ/OmpR osmolarity regulator and the mammalian 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase glycolytic regulator, whose networks have deficiencies up to four. We show that bifunctionality leads to different forms of concentration control that are robust to changes in initial conditions or total amounts. Finally, we outline a systematic procedure for using complex-linear invariants to analyse molecular networks of any deficiency. Copyright © 2012 Elsevier Ltd. All rights reserved.
Compensating for Language Deficits in Amnesia II: H.M.’s Spared versus Impaired Encoding Categories
Directory of Open Access Journals (Sweden)
Chris Hadley
2013-03-01
Full Text Available Although amnesic H.M. typically could not recall where or when he met someone, he could recall their topics of conversation after long interference-filled delays, suggesting impaired encoding for some categories of novel events but not others. Similarly, H.M. successfully encoded into internal representations (sentence plans some novel linguistic structures but not others in the present language production studies. For example, on the Test of Language Competence (TLC, H.M. produced uncorrected errors when encoding a wide range of novel linguistic structures, e.g., violating reliably more gender constraints than memory-normal controls when encoding referent-noun, pronoun-antecedent, and referent-pronoun anaphora, as when he erroneously and without correction used the gender-inappropriate pronoun “her” to refer to a man. In contrast, H.M. never violated corresponding referent-gender constraints for proper names, suggesting that his mechanisms for encoding proper name gender-agreement were intact. However, H.M. produced no more dysfluencies, off-topic comments, false starts, neologisms, or word and phonological sequencing errors than controls on the TLC. Present results suggest that: (a frontal mechanisms for retrieving and sequencing word, phrase, and phonological categories are intact in H.M., unlike in category-specific aphasia; (b encoding mechanisms in the hippocampal region are category-specific rather than item-specific, applying to, e.g., proper names rather than words; (c H.M.’s category-specific mechanisms for encoding referents into words, phrases, and propositions are impaired, with the exception of referent gender, person, and number for encoding proper names; and (d H.M. overuses his intact proper name encoding mechanisms to compensate for his impaired mechanisms for encoding other functionally equivalent linguistic information.
Primordial black holes in linear and non-linear regimes
Allahyari, Alireza; Abolhasani, Ali Akbar
2016-01-01
Using the concept of apparent horizon for dynamical black holes, we revisit the formation of primordial black holes (PBH) in the early universe for both linear and non-linear regimes. First, we develop the perturbation theory for spherically symmetric spacetimes to study the formation of spherical PBHs in linear regime and we fix two gauges. We also introduce a well defined gauge invariant quantity for the expansion. Using this quantity, we argue that PBHs do not form in the linear regime. Finally, we study the non-linear regime. We adopt the spherical collapse picture by taking a closed FRW model in the radiation dominated era to investigate PBH formation. Taking the initial condition of the spherical collapse from the linear theory of perturbations, we allow for both density and velocity perturbations. Our model gives a constraint on the velocity perturbation. This model also predicts that the apparent horizon of PBHs forms when $\\delta > 3$. Applying the sound horizon constraint, we have shown the threshol...
Expert systems and ballistic range data analysis
Hathaway, Wayne; Steinhoff, Mark; Whyte, Robert; Brown, David; Choate, Jeff; Adelgren, Russ
1992-07-01
A program aimed at the development of an expert system for the reduction of ballistic range data is described. The program applies expert system and artificial intelligence techniques to develop a mathematically complex state-of-the-art spark range data reduction procedure that includes linear theory and six-degree-of-freedom analysis. The scope of the knowledge base includes both spin and statically stable vehicles. The expert system is expected to improve the quality of the data reduction process while reducing the work load on the senior range engineer.
Wu, Wenjie; Zheng, Panpan; Liu, Jinquan; Li, Zhu; Fan, Ji; Liu, Huafeng; Tu, Liangcheng
2017-09-20
Encoder-like micro area-changed capacitive transducers are advantageous in terms of their better linearity and larger dynamic range compared to gap-changed capacitive transducers. Such transducers have been widely applied in rectilinear and rotational position sensors, lab-on-a-chip applications and bio-sensors. However, a complete model accounting for both the parasitic capacitance and fringe effect in area-changed capacitive transducers has not yet been developed. This paper presents a complete model for this type of transducer applied to a high-resolution micro accelerometer that was verified by both simulations and experiments. A novel optimization method involving the insertion of photosensitive polyimide was used to reduce the parasitic capacitance, and the capacitor spacing was decreased to overcome the fringe effect. The sensitivity of the optimized transducer was approximately 46 pF/mm, which was nearly 40 times higher than that of our previous transducer. The displacement detection resolution was measured as 50 pm/√Hz at 0.1 Hz using a precise capacitance detection circuit. Then, the transducer was applied to a sandwich in-plane micro accelerometer, and the measured level of the accelerometer was approximately 30 ng/√Hz at 1Hz. The earthquake that occurred in Taiwan was also detected during a continuous gravity measurement.
Directory of Open Access Journals (Sweden)
Wenjie Wu
2017-09-01
Full Text Available Encoder-like micro area-changed capacitive transducers are advantageous in terms of their better linearity and larger dynamic range compared to gap-changed capacitive transducers. Such transducers have been widely applied in rectilinear and rotational position sensors, lab-on-a-chip applications and bio-sensors. However, a complete model accounting for both the parasitic capacitance and fringe effect in area-changed capacitive transducers has not yet been developed. This paper presents a complete model for this type of transducer applied to a high-resolution micro accelerometer that was verified by both simulations and experiments. A novel optimization method involving the insertion of photosensitive polyimide was used to reduce the parasitic capacitance, and the capacitor spacing was decreased to overcome the fringe effect. The sensitivity of the optimized transducer was approximately 46 pF/mm, which was nearly 40 times higher than that of our previous transducer. The displacement detection resolution was measured as 50 pm/√Hz at 0.1 Hz using a precise capacitance detection circuit. Then, the transducer was applied to a sandwich in-plane micro accelerometer, and the measured level of the accelerometer was approximately 30 ng/√Hz at 1Hz. The earthquake that occurred in Taiwan was also detected during a continuous gravity measurement.
Properties of virion transactivator proteins encoded by primate cytomegaloviruses
Directory of Open Access Journals (Sweden)
Barry Peter A
2009-05-01
Full Text Available Abstract Background Human cytomegalovirus (HCMV is a betaherpesvirus that causes severe disease in situations where the immune system is immature or compromised. HCMV immediate early (IE gene expression is stimulated by the virion phosphoprotein pp71, encoded by open reading frame (ORF UL82, and this transactivation activity is important for the efficient initiation of viral replication. It is currently recognized that pp71 acts to overcome cellular intrinsic defences that otherwise block viral IE gene expression, and that interactions of pp71 with the cell proteins Daxx and ATRX are important for this function. A further property of pp71 is the ability to enable prolonged gene expression from quiescent herpes simplex virus type 1 (HSV-1 genomes. Non-human primate cytomegaloviruses encode homologs of pp71, but there is currently no published information that addresses their effects on gene expression and modes of action. Results The UL82 homolog encoded by simian cytomegalovirus (SCMV, strain Colburn, was identified and cloned. This ORF, named S82, was cloned into an HSV-1 vector, as were those from baboon, rhesus monkey and chimpanzee cytomegaloviruses. The use of an HSV-1 vector enabled expression of the UL82 homologs in a range of cell types, and permitted investigation of their abilities to direct prolonged gene expression from quiescent genomes. The results show that all UL82 homologs activate gene expression, and that neither host cell type nor promoter target sequence has major effects on these activities. Surprisingly, the UL82 proteins specified by non-human primate cytomegaloviruses, unlike pp71, did not direct long term expression from quiescent HSV-1 genomes. In addition, significant differences were observed in the intranuclear localization of the UL82 homologs, and in their effects on Daxx. Strikingly, S82 mediated the release of Daxx from nuclear domain 10 substructures much more rapidly than pp71 or the other proteins tested. All
Optimal control linear quadratic methods
Anderson, Brian D O
2007-01-01
This augmented edition of a respected text teaches the reader how to use linear quadratic Gaussian methods effectively for the design of control systems. It explores linear optimal control theory from an engineering viewpoint, with step-by-step explanations that show clearly how to make practical use of the material.The three-part treatment begins with the basic theory of the linear regulator/tracker for time-invariant and time-varying systems. The Hamilton-Jacobi equation is introduced using the Principle of Optimality, and the infinite-time problem is considered. The second part outlines the
Practical Session: Simple Linear Regression
Clausel, M.; Grégoire, G.
2014-12-01
Two exercises are proposed to illustrate the simple linear regression. The first one is based on the famous Galton's data set on heredity. We use the lm R command and get coefficients estimates, standard error of the error, R2, residuals …In the second example, devoted to data related to the vapor tension of mercury, we fit a simple linear regression, predict values, and anticipate on multiple linear regression. This pratical session is an excerpt from practical exercises proposed by A. Dalalyan at EPNC (see Exercises 1 and 2 of http://certis.enpc.fr/~dalalyan/Download/TP_ENPC_4.pdf).
CSIR Research Space (South Africa)
Duvenhage, B
2015-11-01
Full Text Available and Vision Computing, Auckland, New Zealand, 23-24 November 2015 Long Range Image Enhancement Bernardt Duvenhage Council for Scientific and Industrial Research South Africa Email: bduvenhage@csir.co.za Abstract Turbulent pockets of air...
SNOWY RANGE WILDERNESS, WYOMING.
Houston, Robert S.; Bigsby, Philip R.
1984-01-01
A mineral survey of the Snowy Range Wilderness in Wyoming was undertaken and was followed up with more detailed geologic and geochemical surveys, culminating in diamond drilling of one hole in the Snowy Range Wilderness. No mineral deposits were identified in the Snowy Range Wilderness, but inasmuch as low-grade uranium and associated gold resources were identified in rocks similar to those of the northern Snowy Range Wilderness in an area about 5 mi northeast of the wilderness boundary, the authors conclude that the northern half of the wilderness has a probable-resource potential for uranium and gold. Closely spaced drilling would be required to completely evaluate this mineral potential. The geologic terrane precludes the occurrence of fossil fuels.
Federal Laboratory Consortium — ATR controls fully-instrumented and integrated test ranges that provide full-service support for cradle-to-grave testing. Airspace and surface target areas are used...
U.S. Geological Survey, Department of the Interior — LiDAR (Light Detection and Ranging) discrete-return point cloud data are available in the American Society for Photogrammetry and Remote Sensing (ASPRS) LAS format....
Linear ubiquitin chain induces apoptosis and inhibits tumor growth.
Qin, Zhoushuai; Jiang, Wandong; Wang, Guifen; Sun, Ying; Xiao, Wei
2018-01-01
Ubiquitination of proliferating cell nuclear antigen (PCNA) plays an important role in DNA damage response. Ectopic expression of PCNA fused at either terminus with ubiquitin (Ub) lacking two C-terminal glycine residues induces translesion DNA synthesis which resembles synthesis mediated by PCNA monoubiquitination. PCNA fused with Ub containing the C-terminal Gly residues at the C-terminus can be further polyubiquitinated in a Gly-dependent manner, which inhibits cell proliferation and induces ATR-dependent replication checkpoint. In this study, we surprisingly found that PCNA fused to a head-to-tail linear Ub chain induces apoptosis in a Ub chain length-dependent manner. Further investigation revealed that the apoptotic effect is actually induced by the linear Ub chain independently from PCNA, as the Ub chain fused to GFP or an epitope tag still efficiently induces apoptosis. It is revealed that the artificial linear Ub chain differs from endogenously encoded linear Ub chains in that its Ubs contain a Ub-G76S substitution, making the Ub chain resistant to cleavage by deubiquitination enzymes. We demonstrated in this study that ectopic expression of the artificial Ub chain alone in cultured human cancer cells is sufficient to inhibit tumor growth in a xenograft mouse model, making the linear Ub chain a putative anti-cancer agent.
NIRS feature extraction based on deep auto-encoder neural network
Liu, Ting; Li, Zhongren; Yu, Chunxia; Qin, Yuhua
2017-12-01
As a secondary analysis method, Near Infrared Spectroscopy (NIRS) needs an effective feature extraction method to improve the model performance. Deep auto-encoder (DAE) can build up an adaptive multilayer encoder network to transform the high-dimensional data into a low-dimensional code with both linear and nonlinear feature combinations. To evaluate its capability, we experimented on the spectra data obtained from different categories of cigarette with the method of DAE, and compared with the principal component analysis (PCA). The results showed that the DAE can extract more nonlinear features to characterize cigarette quality. In addition, the DAE also got the linear distribution of cigarette quality by its nonlinear transformation of features. Finally, we employed k-Nearest Neighbor (kNN) to classify different categories of cigarette with the features extracted by the linear transformation methods as PCA and wavelet transform-principal component analysis (WT-PCA), and the nonlinear transformation methods as DAE and isometric mapping (ISOMAP). The results showed that the pattern recognition mode built on features extracted by DAE was provided with more validity.
Effortful retrieval reduces hippocampal activity and impairs incidental encoding.
Reas, Emilie T; Brewer, James B
2013-05-01
Functional imaging studies frequently report that the hippocampus is engaged by successful episodic memory retrieval. However, considering that concurrent encoding of the background environment occurs during retrieval and influences medial temporal lobe activity, it is plausible that hippocampal encoding functions are reduced with increased attentional engagement during effortful retrieval. Expanding upon evidence that retrieval efforts suppress activity in hippocampal regions implicated in encoding, this study examines the influence of retrieval effort on encoding performance and the interactive effects of encoding and retrieval on hippocampal and neocortical activity. Functional magnetic resonance imaging was conducted while subjects performed a word recognition task with incidental picture encoding. Both lower memory strength and increased search duration were associated with encoding failure and reduced hippocampal and default network activity. Activity in the anterior hippocampus tracked encoding, which was more strongly deactivated when incidental encoding was unsuccessful. These findings highlight potential contributions from background encoding processes to hippocampal activations during neuroimaging studies of episodic memory retrieval. Copyright © 2013 Wiley Periodicals, Inc.
Identification of β-haemolysin-encoding genes in Streptococcus anginosus.
Asam, D; Mauerer, S; Walheim, E; Spellerberg, B
2013-08-01
Streptococcus anginosus is an emerging pathogen, but little is known about its virulence factors. To detect the genes responsible for β-haemolysis we performed genomic mutagenesis of the β-haemolytic S. anginosus type strain ATCC 12395 using the vector pGhost9:ISS1. Integration site analysis of 15 non-haemolytic mutants identified a gene cluster with high homology to the genes of the streptolysin S (SLS) encoding sag gene cluster of S. pyogenes. The gene cluster harbours 10 open reading frames displaying significant similarities to the S. pyogenes genes sagA-sagI, with the identities on protein level ranging from 38 to 87%. Complementation assays of S. anginosus sagB and sagD integration mutants with the respective genes confirmed their importance for β-haemolysin production and suggest the presence of post-translational modifications in S. anginosus SLS similar to SLS of S. pyogenes. Characterization of the S. anginosus haemolysin in comparison to the S. pyogenes SLS showed that the haemolysin is surface bound, but in contrast to S. pyogenes neither fetal calf serum nor RNA was able to stabilize the haemolysin of S. anginosus in culture supernatants. Inhibition of β-haemolysis by polyethylene glycol of different sizes was carried out, giving no evidence of a pore-forming haemolytic mechanism. Analysis of a whole genome shotgun sequence of Streptococcus constellatus, a closely related streptococcal species that belongs to the S. anginosus group, revealed a similar sag gene cluster. Employing a genomic mutagenesis strategy we were able to determine an SLS encoding gene cluster in S. anginosus and demonstrate its importance for β-haemolysin production in S. anginosus. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
DEFF Research Database (Denmark)
Hansen, Thomas Dueholm; Miltersen, Peter Bro; Sørensen, Troels Bjerre
2008-01-01
is a small number, but only gave heuristic arguments for this. In this paper, we provide the first methods for rigorously estimating the Range of Skill of a given game. We provide some general, asymptotic bounds that imply that the Range of Skill of a perfectly balanced game tree is almost exponential in its......At AAAI'07, Zinkevich, Bowling and Burch introduced the Range of Skill measure of a two-player game and used it as a parameter in the analysis of the running time of an algorithm for finding approximate solutions to such games. They suggested that the Range of Skill of a typical natural game...... size (and doubly exponential in its depth). We also provide techniques that yield concrete bounds for unbalanced game trees and apply these to estimate the Range of Skill of Tic-Tac-Toe and Heads-Up Limit Texas Hold'em Poker. In particular, we show that the Range of Skill of Tic-Tac-Toe is more than...
Linear algebra and group theory for physicists
Rao, K N Srinivasa
2006-01-01
Professor Srinivasa Rao's text on Linear Algebra and Group Theory is directed to undergraduate and graduate students who wish to acquire a solid theoretical foundation in these mathematical topics which find extensive use in physics. Based on courses delivered during Professor Srinivasa Rao's long career at the University of Mysore, this text is remarkable for its clear exposition of the subject. Advanced students will find a range of topics such as the Representation theory of Linear Associative Algebras, a complete analysis of Dirac and Kemmer algebras, Representations of the Symmetric group via Young Tableaux, a systematic derivation of the Crystallographic point groups, a comprehensive and unified discussion of the Rotation and Lorentz groups and their representations, and an introduction to Dynkin diagrams in the classification of Lie groups. In addition, the first few chapters on Elementary Group Theory and Vector Spaces also provide useful instructional material even at an introductory level. An author...
Linear magnetic fusion: summary of Seattle workshop
Energy Technology Data Exchange (ETDEWEB)
None
1977-12-01
The linear-geometry magnetic confinement concept is among the oldest used in the study of high-temperature plasmas. However, it has generally been discounted as a suitable approach for demonstrating controlled thermonuclear fusion because rapid losses from the plasma column ends necessitate very long devices. Further, the losses and how to overcome them have not yet received parametric experimental study, nor do facilities exist with which such definitive experiments could be performed. Nonetheless, the important positive attribute, simplicity, together with the appearance of several ideas for reducing end losses have provided motivation for continued research on linear magnetic fusion (LMF). These motivations led to the LMF workshop, held in Seattle, March 9--11, 1977, which explored the potential of LMF as an alternate approach to fusion. A broad range of LMF aspects were addressed, including radial and axial losses, stability and equilibrium, heating, technology, and reactor considerations. The conclusions drawn at the workshop are summarized.
Linear distance coding for image classification.
Wang, Zilei; Feng, Jiashi; Yan, Shuicheng; Xi, Hongsheng
2013-02-01
The feature coding-pooling framework is shown to perform well in image classification tasks, because it can generate discriminative and robust image representations. The unavoidable information loss incurred by feature quantization in the coding process and the undesired dependence of pooling on the image spatial layout, however, may severely limit the classification. In this paper, we propose a linear distance coding (LDC) method to capture the discriminative information lost in traditional coding methods while simultaneously alleviating the dependence of pooling on the image spatial layout. The core of the LDC lies in transforming local features of an image into more discriminative distance vectors, where the robust image-to-class distance is employed. These distance vectors are further encoded into sparse codes to capture the salient features of the image. The LDC is theoretically and experimentally shown to be complementary to the traditional coding methods, and thus their combination can achieve higher classification accuracy. We demonstrate the effectiveness of LDC on six data sets, two of each of three types (specific object, scene, and general object), i.e., Flower 102 and PFID 61, Scene 15 and Indoor 67, Caltech 101 and Caltech 256. The results show that our method generally outperforms the traditional coding methods, and achieves or is comparable to the state-of-the-art performance on these data sets.
Sponberg, Simon; Daniel, Thomas L.; Fairhall, Adrienne L.
2015-01-01
What are the features of movement encoded by changing motor commands? Do motor commands encode movement independently or can they be represented in a reduced set of signals (i.e. synergies)? Motor encoding poses a computational and practical challenge because many muscles typically drive movement, and simultaneous electrophysiology recordings of all motor commands are typically not available. Moreover, during a single locomotor period (a stride or wingstroke) the variation in movement may have high dimensionality, even if only a few discrete signals activate the muscles. Here, we apply the method of partial least squares (PLS) to extract the encoded features of movement based on the cross-covariance of motor signals and movement. PLS simultaneously decomposes both datasets and identifies only the variation in movement that relates to the specific muscles of interest. We use this approach to explore how the main downstroke flight muscles of an insect, the hawkmoth Manduca sexta, encode torque during yaw turns. We simultaneously record muscle activity and turning torque in tethered flying moths experiencing wide-field visual stimuli. We ask whether this pair of muscles acts as a muscle synergy (a single linear combination of activity) consistent with their hypothesized function of producing a left-right power differential. Alternatively, each muscle might individually encode variation in movement. We show that PLS feature analysis produces an efficient reduction of dimensionality in torque variation within a wingstroke. At first, the two muscles appear to behave as a synergy when we consider only their wingstroke-averaged torque. However, when we consider the PLS features, the muscles reveal independent encoding of torque. Using these features we can predictably reconstruct the variation in torque corresponding to changes in muscle activation. PLS-based feature analysis provides a general two-sided dimensionality reduction that reveals encoding in high dimensional
[New technology for linear colliders
Energy Technology Data Exchange (ETDEWEB)
McIntyre, P.M.
1992-08-12
This report discusses the following topics on research of microwave amplifiers for linear colliders: Context in current microwave technology development; gated field emission for microwave cathodes; cathode fabrication and tests; microwave cathode design using field emitters; and microwave localization.
Linearity of holographic entanglement entropy
National Research Council Canada - National Science Library
Almheiri, Ahmed; Dong, Xi; Swingle, Brian
2017-01-01
We consider the question of whether the leading contribution to the entanglement entropy in holographic CFTs is truly given by the expectation value of a linear operator as is suggested by the Ryu-Takayanagi formula...
An introduction to linear algebra
Mirsky, L
2003-01-01
Rigorous, self-contained coverage of determinants, vectors, matrices and linear equations, quadratic forms, more. Elementary, easily readable account with numerous examples and problems at the end of each chapter.
CERN balances linear collider studies
ILC Newsline
2011-01-01
The forces behind the two most mature proposals for a next-generation collider, the International Linear Collider (ILC) and the Compact Linear Collider (CLIC) study, have been steadily coming together, with scientists from both communities sharing ideas and information across the technology divide. In a support of cooperation between the two, CERN in Switzerland, where most CLIC research takes place, recently converted the project-specific position of CLIC Study Leader to the concept-based Linear Collider Study Leader. The scientist who now holds this position, Steinar Stapnes, is charged with making the linear collider a viable option for CERN’s future, one that could include either CLIC or the ILC. The transition to more involve the ILC must be gradual, he said, and the redefinition of his post is a good start. Though not very much involved with superconducting radiofrequency (SRF) technology, where ILC researchers have made significant advances, CERN participates in many aspect...
Klumpp, A. R.; Lawson, C. L.
1988-01-01
Routines provided for common scalar, vector, matrix, and quaternion operations. Computer program extends Ada programming language to include linear-algebra capabilities similar to HAS/S programming language. Designed for such avionics applications as software for Space Station.
CLIC: developing a linear collider
Laurent Guiraud
1999-01-01
Compact Linear Collider (CLIC) is a CERN project to provide high-energy electron-positron collisions. Instead of conventional radio-frequency klystrons, CLIC will use a low-energy, high-intensity primary beam to produce acceleration.
DEFF Research Database (Denmark)
Du, Yigang
without iteration steps. The ASA is implemented in combination with Field II and extended to simulate the pulsed ultrasound fields. The simulated results from a linear array transducer are made by the ASA based on Field II, and by a released non-linear simulation program- Abersim, respectively....... The calculation speed of the ASA is increased approximately by a factor of 140. For the second harmonic point spread function the error of the full width is 1.5% at -6 dB and 6.4% at -12 dB compared to Abersim. To further investigate the linear and non-linear ultrasound fields, hydrophone measurements.......3% relative to the measurement from a 1 inch diameter transducer. A preliminary study for harmonic imaging using synthetic aperture sequential beamforming (SASB) has been demonstrated. A wire phantom underwater measurement is made by an experimental synthetic aperture real-time ultrasound scanner (SARUS...
LINEAR AND NONLINEAR SEMIDEFINITE PROGRAMMING
Directory of Open Access Journals (Sweden)
Walter Gómez Bofill
2014-12-01
Full Text Available This paper provides a short introduction to optimization problems with semidefinite constraints. Basic duality and optimality conditions are presented. For linear semidefinite programming some advances by dealing with degeneracy and the semidefinite facial reduction are discussed. Two relatively recent areas of application are presented. Finally a short overview of relevant literature on algorithmic approaches for efficiently solving linear and nonlinear semidefinite programming is provided.
Directory of Open Access Journals (Sweden)
Rumen Daskalov
2017-07-01
Full Text Available Let an $[n,k,d]_q$ code be a linear code of length $n$, dimension $k$ and minimum Hamming distance $d$ over $GF(q$. One of the most important problems in coding theory is to construct codes with optimal minimum distances. In this paper 22 new ternary linear codes are presented. Two of them are optimal. All new codes improve the respective lower bounds in [11].
Range detection for AGV using a rotating sonar sensor
Chiang, Wen-chuan; Ramamurthy, Dhyana Chandra; Mundhenk, Terrell N.; Hall, Ernest L.
1998-10-01
A single rotating sonar element is used with a restricted angle of sweep to obtain readings to develop a range map for the unobstructed path of an autonomous guided vehicle (AGV). A Polaroid ultrasound transducer element is mounted on a micromotor with an encoder feedback. The motion of this motor is controlled using a Galil DMC 1000 motion control board. The encoder is interfaced with the DMC 1000 board using an intermediate IMC 1100 break-out board. By adjusting the parameters of the Polaroid element, it is possible to obtain range readings at known angles with respect to the center of the robot. The readings are mapped to obtain a range map of the unobstructed path in front of the robot. The idea can be extended to a 360 degree mapping by changing the assembly level programming on the Galil Motion control board. Such a system would be compact and reliable over a range of environments and AGV applications.
Crestel, Benjamin; Alexanderian, Alen; Stadler, Georg; Ghattas, Omar
2017-07-01
The computational cost of solving an inverse problem governed by PDEs, using multiple experiments, increases linearly with the number of experiments. A recently proposed method to decrease this cost uses only a small number of random linear combinations of all experiments for solving the inverse problem. This approach applies to inverse problems where the PDE solution depends linearly on the right-hand side function that models the experiment. As this method is stochastic in essence, the quality of the obtained reconstructions can vary, in particular when only a small number of combinations are used. We develop a Bayesian formulation for the definition and computation of encoding weights that lead to a parameter reconstruction with the least uncertainty. We call these weights A-optimal encoding weights. Our framework applies to inverse problems where the governing PDE is nonlinear with respect to the inversion parameter field. We formulate the problem in infinite dimensions and follow the optimize-then-discretize approach, devoting special attention to the discretization and the choice of numerical methods in order to achieve a computational cost that is independent of the parameter discretization. We elaborate our method for a Helmholtz inverse problem, and derive the adjoint-based expressions for the gradient of the objective function of the optimization problem for finding the A-optimal encoding weights. The proposed method is potentially attractive for real-time monitoring applications, where one can invest the effort to compute optimal weights offline, to later solve an inverse problem repeatedly, over time, at a fraction of the initial cost.
A New Linearization Technique Using Multi-sinh Doublet
Directory of Open Access Journals (Sweden)
CEHAN, V.
2009-06-01
Full Text Available In this paper a new linearization technique using multi-sinh doublet, implemented with a second generation current conveyor is presented. This new linearization technique is compared with the one based on multi-tanh doublets with linearization series connected diodes on the branches. The comparative study of the two linearization techniques is carried out using both dynamic range analysis, expressed by linearity error and the THD value calculation of output current, and the noise behavior of the two analyzed doublets. For the multi-sinh linearization technique proposed in the paper a method which assures the increase of the dynamic range, keeping the transconductance value constant is presented. This is done by using two design parameters: the number of series connected diodes N, which specifies the desired linear operating range and the k emitters areas ratio of the input stage transistors, which establishes the transconductance value. In the paper is also shown that if the transconductances of the two analyzed doublets are identical, and for the same values of N and k parameters, respectively, the current consumption of the multi-sinh doublet is always smaller than for the multi-tanh doublet.
Transition from linear to nonlinear sputtering of solid xenon
DEFF Research Database (Denmark)
Dutkiewicz, L.; Pedrys, R.; Schou, Jørgen
1995-01-01
Self-sputtering of solid xenon has been studied with molecular dynamics simulations as a model system for the transition from dominantly linear to strongly nonlinear effects. The simulation covered the projectile energy range from 20 to 750 eV. Within a relatively narrow range from 30 to 250 e...
The small-sized ultraprecision sensor for measuring linear displacements
Lushnikov, D. S.; Zherdev, A. Y.; Odinokov, S. B.; Markin, V. V.; Gurylev, O. A.; Shishova, M. V.
2017-06-01
The article describes a new optical scheme of noncontact sensor for measuring linear displacement - linear encoder. This sensor is an optical device in which the measurement of displacement is performed by analyzing the optical signal, which pass through two diffraction gratings, one of which is moved relative to the other. The optical signal is obtained by the diffraction of light in these diffraction gratings and subsequent interference of diffracted beams. Often this type of sensors are multi-channel devices with symmetrically positioned of detectors. This scheme is proposed to use a multisection phase mask that allows to make a small-sized sensor. Sections of this multi-section phase mask are the optical windows and they made the final interference signals to be shifted relative to each other in phase. The number of sections in the multi-section phase mask can be varied. Estimated sufficient number of sections is four or more.
Neural correlates of the episodic encoding of pictures and words
Grady, Cheryl L.; Anthony R. Mcintosh; Rajah, M. Natasha; Craik, Fergus I.M.
1998-01-01
A striking characteristic of human memory is that pictures are remembered better than words. We examined the neural correlates of memory for pictures and words in the context of episodic memory encoding to determine material-specific differences in brain activity patterns. To do this, we used positron emission tomography to map the brain regions active during encoding of words and pictures of objects. Encoding was carried out by using three different strategies to explore possible interaction...
A New Methodology for Vibration Error Compensation of Optical Encoders
Mariano Artes; Jesus Lopez
2012-01-01
Optical encoders are sensors based on grating interference patterns. Tolerances inherent to the manufacturing process can induce errors in the position accuracy as the measurement signals stand apart from the ideal conditions. In case the encoder is working under vibrations, the oscillating movement of the scanning head is registered by the encoder system as a displacement, introducing an error into the counter to be added up to graduation, system and installation errors. Behavior improvement...
Berry, Dominic W.; Childs, Andrew M.; Ostrander, Aaron; Wang, Guoming
2017-10-01
We present a quantum algorithm for systems of (possibly inhomogeneous) linear ordinary differential equations with constant coefficients. The algorithm produces a quantum state that is proportional to the solution at a desired final time. The complexity of the algorithm is polynomial in the logarithm of the inverse error, an exponential improvement over previous quantum algorithms for this problem. Our result builds upon recent advances in quantum linear systems algorithms by encoding the simulation into a sparse, well-conditioned linear system that approximates evolution according to the propagator using a Taylor series. Unlike with finite difference methods, our approach does not require additional hypotheses to ensure numerical stability.
Berry, Dominic W.; Childs, Andrew M.; Ostrander, Aaron; Wang, Guoming
2017-12-01
We present a quantum algorithm for systems of (possibly inhomogeneous) linear ordinary differential equations with constant coefficients. The algorithm produces a quantum state that is proportional to the solution at a desired final time. The complexity of the algorithm is polynomial in the logarithm of the inverse error, an exponential improvement over previous quantum algorithms for this problem. Our result builds upon recent advances in quantum linear systems algorithms by encoding the simulation into a sparse, well-conditioned linear system that approximates evolution according to the propagator using a Taylor series. Unlike with finite difference methods, our approach does not require additional hypotheses to ensure numerical stability.
Directory of Open Access Journals (Sweden)
Hazem Issa
2003-02-01
Full Text Available Stereo correspondence is one of the most active research areas in computer vision. It consists in identifying features in two or more stereo images that are generated by the same physical feature in the three-dimensional space. In our approach, the matching problem is first turned into an optimization task where a fitness function, representing the constraints on the solution, is to be minimized. The optimization process is then performed by means of a genetic algorithm with a new encoding scheme. Experimental results are presented to demonstrate the robustness and the reliability of the proposed approach for obstacle detection in front of a vehicle using linear stereo vision.
Dynamical encoding of looming, receding, and focussing
Longtin, Andre; Clarke, Stephen Elisha; Maler, Leonard; CenterNeural Dynamics Collaboration
This talk will discuss a non-conventional neural coding task that may apply more broadly to many senses in higher vertebrates. We ask whether and how a non-visual sensory system can focus on an object. We present recent experimental and modeling work that shows how the early sensory circuitry of electric sense can perform such neuronal focusing that is manifested behaviorally. This sense is the main one used by weakly electric fish to navigate, locate prey and communicate in the murky waters of their natural habitat. We show that there is a distance at which the Fisher information of a neuron's response to a looming and receding object is maximized, and that this distance corresponds to a behaviorally relevant one chosen by these animals. Strikingly, this maximum occurs at a bifurcation between tonic firing and bursting. We further discuss how the invariance of this distance to signal attributes can arise, a process that first involves power-law spike frequency adaptation. The talk will also highlight the importance of expanding the classic dual neural encoding of contrast using ON and OFF cells in the context of looming and receding stimuli. The authors acknowledge support from CIHR and NSERC.
Coherence potentials encode simple human sensorimotor behavior.
Directory of Open Access Journals (Sweden)
Dhanya Parameshwaran
Full Text Available Recent work has shown that large amplitude negative periods in the local field potential (nLFPs are able to spread in saltatory manner across large distances in the cortex without distortion in their temporal structure forming 'coherence potentials'. Here we analysed subdural electrocorticographic (ECoG signals recorded at 59 sites in the sensorimotor cortex in the left hemisphere of a human subject performing a simple visuomotor task (fist clenching and foot dorsiflexion to understand how coherence potentials arising in the recordings relate to sensorimotor behavior. In all behaviors we found a particular coherence potential (i.e. a cascade of a particular nLFP wave pattern arose consistently across all trials with temporal specificity. During contrateral fist clenching, but not the foot dorsiflexion or ipsilateral fist clenching, the coherence potential most frequently originated in the hand representation area in the somatosensory cortex during the anticipation and planning periods of the trial, moving to other regions during the actual motor behavior. While these 'expert' sites participated more consistently, other sites participated only a small fraction of the time. Furthermore, the timing of the coherence potential at the hand representation area after onset of the cue predicted the timing of motor behavior. We present the hypothesis that coherence potentials encode information relevant for behavior and are generated by the 'expert' sites that subsequently broadcast to other sites as a means of 'sharing knowledge'.
Aging affects neural precision of speech encoding.
Anderson, Samira; Parbery-Clark, Alexandra; White-Schwoch, Travis; Kraus, Nina
2012-10-10
Older adults frequently report they can hear what is said but cannot understand the meaning, especially in noise. This difficulty may arise from the inability to process rapidly changing elements of speech. Aging is accompanied by a general slowing of neural processing and decreased neural inhibition, both of which likely interfere with temporal processing in auditory and other sensory domains. Age-related reductions in inhibitory neurotransmitter levels and delayed neural recovery can contribute to decreases in the temporal precision of the auditory system. Decreased precision may lead to neural timing delays, reductions in neural response magnitude, and a disadvantage in processing the rapid acoustic changes in speech. The auditory brainstem response (ABR), a scalp-recorded electrical potential, is known for its ability to capture precise neural synchrony within subcortical auditory nuclei; therefore, we hypothesized that a loss of temporal precision results in subcortical timing delays and decreases in response consistency and magnitude. To assess this hypothesis, we recorded ABRs to the speech syllable /da/ in normal hearing younger (18-30 years old) and older (60-67 years old) adult humans. Older adults had delayed ABRs, especially in response to the rapidly changing formant transition, and greater response variability. We also found that older adults had decreased phase locking and smaller response magnitudes than younger adults. Together, our results support the theory that older adults have a loss of temporal precision in the subcortical encoding of sound, which may account, at least in part, for their difficulties with speech perception.
Auditory-motor coupling affects phonetic encoding.
Schmidt-Kassow, Maren; Thöne, Katharina; Kaiser, Jochen
2017-11-27
Recent studies have shown that moving in synchrony with auditory stimuli boosts attention allocation and verbal learning. Furthermore rhythmic tones are processed more efficiently than temporally random tones ('timing effect'), and this effect is increased when participants actively synchronize their motor performance with the rhythm of the tones, resulting in auditory-motor synchronization. Here, we investigated whether this applies also to sequences of linguistic stimuli (syllables). We compared temporally irregular syllable sequences with two temporally regular conditions where either the interval between syllable onsets (stimulus onset asynchrony, SOA) or the interval between the syllables' vowel onsets was kept constant. Entrainment to the stimulus presentation frequency (1 Hz) and event-related potentials were assessed in 24 adults who were instructed to detect pre-defined deviant syllables while they either pedaled or sat still on a stationary exercise bike. We found larger 1 Hz entrainment and P300 amplitudes for the SOA presentation during motor activity. Furthermore, the magnitude of the P300 component correlated with the motor variability in the SOA condition and 1 Hz entrainment, while in turn 1 Hz entrainment correlated with auditory-motor synchronization performance. These findings demonstrate that acute auditory-motor coupling facilitates phonetic encoding. Copyright © 2017 Elsevier B.V. All rights reserved.
Three-dimensional MRI with independent slab excitation and encoding.
Eissa, Amir; Wilman, Alan H
2012-02-01
Three-dimensional MRI is typically performed with the same orientation for radiofrequency slab excitation and slab select phase encoding. We introduce independent slab excitation and encoding to create a new degree of freedom in three-dimensional MRI, which is the angular relationship between the prescribed excitation volume and the voxel encoding grid. By separating the directions of slab excitation and slab phase encoding, the independent slab excitation and encoding method allows choice of optimal voxel orientation, while maintaining volume excitation based on anatomic landmarks. The method requires simple pulse sequence modifications and uses standard image reconstruction followed by removal of aliasing and image reformatting. The independent slab excitation and encoding method enables arbitrary oblique angle imaging using fixed voxel encoding gradients to maintain similar eddy current, concomitant field, or magnetic dipole effects independent of the oblique angle of excitation. We apply independent slab excitation and encoding to phase and susceptibility-weighted imaging using fixed voxel encoding aligned with the main magnetic field to demonstrate its value in both standardizing and improving image contrast, when using arbitrary oblique imaging volumes. Copyright © 2011 Wiley Periodicals, Inc.
Method for high-speed Manchester encoded optical signal generation
DEFF Research Database (Denmark)
Zhang, Jianfeng; Chi, Nan; Holm-Nielsen, Pablo Villanueva
2004-01-01
A method for high-speed Manchester encoded optical signal generation is proposed and demonstrated with a specially configured electro-optical modulator. A 10 Gb/s Manchester encoded optical signal was generated, and its bit-error-ratio (BER) performance was evaluated.......A method for high-speed Manchester encoded optical signal generation is proposed and demonstrated with a specially configured electro-optical modulator. A 10 Gb/s Manchester encoded optical signal was generated, and its bit-error-ratio (BER) performance was evaluated....
Exploring the influence of encoding format on subsequent memory.
Turney, Indira C; Dennis, Nancy A; Maillet, David; Rajah, M Natasha
2017-05-01
Distinctive encoding is greatly influenced by gist-based processes and has been shown to suffer when highly similar items are presented in close succession. Thus, elucidating the mechanisms underlying how presentation format affects gist processing is essential in determining the factors that influence these encoding processes. The current study utilised multivariate partial least squares (PLS) analysis to identify encoding networks directly associated with retrieval performance in a blocked and intermixed presentation condition. Subsequent memory analysis for successfully encoded items indicated no significant differences between reaction time and retrieval performance and presentation format. Despite no significant behavioural differences, behaviour PLS revealed differences in brain-behaviour correlations and mean condition activity in brain regions associated with gist-based vs. distinctive encoding. Specifically, the intermixed format encouraged more distinctive encoding, showing increased activation of regions associated with strategy use and visual processing (e.g., frontal and visual cortices, respectively). Alternatively, the blocked format exhibited increased gist-based processes, accompanied by increased activity in the right inferior frontal gyrus. Together, results suggest that the sequence that information is presented during encoding affects the degree to which distinctive encoding is engaged. These findings extend our understanding of the Fuzzy Trace Theory and the role of presentation format on encoding processes.
Source-constrained retrieval influences the encoding of new information.
Danckert, Stacey L; MacLeod, Colin M; Fernandes, Myra A
2011-11-01
Jacoby, Shimizu, Daniels, and Rhodes (Psychonomic Bulletin & Review, 12, 852-857, 2005) showed that new words presented as foils among a list of old words that had been deeply encoded were themselves subsequently better recognized than new words presented as foils among a list of old words that had been shallowly encoded. In Experiment 1, by substituting a deep-versus-shallow imagery manipulation for the levels-of-processing manipulation, we demonstrated that the effect is robust and that it generalizes, also occurring with a different type of encoding. In Experiment 2, we provided more direct evidence for context-related encoding during tests of deeply encoded words, showing enhanced priming for foils presented among deeply encoded targets when participants made the same deep-encoding judgments on those items as had been made on the targets during study. In Experiment 3, we established that the findings from Experiment 2 are restricted to this specific deep judgment task and are not a general consequence of these foils being associated with deeply encoded items. These findings provide support for the source-constrained retrieval hypothesis of Jacoby, Shimizu, Daniels, and Rhodes: New information can be influenced by how surrounding items are encoded and retrieved, as long as the surrounding items recruit a coherent mode of processing.
What is a "good" encoding of guarded choice?
DEFF Research Database (Denmark)
Nestmann, Uwe
2000-01-01
into the latter that preserves divergence-freedom and symmetries. This paper argues that there are nevertheless "good" encodings between these calculi. In detail, we present a series of encodings for languages with (1) input-guarded choice, (2) both input and output-guarded choice, and (3) mixed-guarded choice......, and investigate them with respect to compositionality and divergence-freedom. The first and second encoding satisfy all of the above criteria, but various "good" candidates for the third encoding-inspired by an existing distributed implementation-invalidate one or the other criterion, While essentially confirming...
Broadband slant linearly polarized biconical antenna
Lakshminarayana, D.; Prasad, R. V. H.; Murthy, T. G. K.
1993-06-01
A broadband biconical antenna with a slant linear polarizer, operating over 2-26 GHz range was designed and fabricated. The results of tests are presented, including the return loss plot of the antenna, radiation patterns at 2, 10, and 26 GHz for vertical and horizontal polarizations in azimuth and elevation planes, and curves indicating the elevation beam-width and gain of the antenna vs. frequency. The antenna gives an omni deviation of +/- 3 dB over 2-26 GHz. It is highly compact, and thus is suitable for systems where space requirements are very stringent.
Electric vehicles: Driving range
Kempton, Willett
2016-09-01
For uptake of electric vehicles to increase, consumers' driving-range needs must be fulfilled. Analysis of the driving patterns of personal vehicles in the US now shows that today's electric vehicles can meet all travel needs on almost 90% of days from a single overnight charge.
Formulating Linear and Integer Linear Programs: A Rogues' Gallery
Brown, Gerald; Robert F.
2007-01-01
INFORMS Transactions on Education, 7, 2007, pp. 153-159. The article of record as published may be located at http://dx.doi.org/10.1287/ited.7.2.153 The art of formulating linear and integer linear programs is, well, an art: It is hard to teach, and even harder to learn. To help demystify this art, we present a set of modeling building blocks that we call “formulettes.” Each formulette consists of a short verbal description that must be expressed in terms of variables and const...
On Solving Linear Complementarity Problems as Linear Programs.
1976-03-01
I,1 c, -, I - - -= 1. I NIRODU CIT I ON Et is a fair’ly well-known fa(t that if a lineas complemenl•arity problem has L solution) then it has a...W. Cottle, "Manifestations of the Schur complement," Linear Algebra and Its Applications, 8 (1974), 189-211. [6] R. W. Cottle and G. B. Dantzig...34Complementarity pivot theory of mathematical programming," Linear Algebra and Its Applications . (1968), 103-125. [7] R. W. Cottle, G. H. Golub and R. S
Linear Deterministic Accumulator Models of Simple Choice
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Andrew eHeathcote
2012-08-01
Full Text Available We examine theories of simple choice as a race among evidence accumulation processes. We focus on the class of deterministic race models, which assume that the effects of fluctuations in the parameters of the accumulation processes between choice trials (between-choice noise dominate the effects of fluctuations occurring while making a choice (within-choice noise in behavioural data (i.e., response times and choices. The latter deterministic approximation, when combined with the assumption that accumulation is linear, leads to a class of models that can be readily applied to simple-choice behaviour because they are computationally tractable. We develop a new and mathematically simple exemplar within the class of linear deterministic models, the Lognormal Race (LNR. We then examine how the LNR, and another widely applied linear deterministic model, Brown and Heathcote’s (2008 LBA, account for a range of benchmark simple-choice effects in lexical-decision task data reported by Wagenmakers, Ratcliff, Gomez and McKoon (2008.
Ritchey, Maureen; McCullough, Andrew M; Ranganath, Charan; Yonelinas, Andrew P
2017-01-01
Acute stress has been shown to modulate memory for recently learned information, an effect attributed to the influence of stress hormones on medial temporal lobe (MTL) consolidation processes. However, little is known about which memories will be affected when stress follows encoding. One possibility is that stress interacts with encoding processes to selectively protect memories that had elicited responses in the hippocampus and amygdala, two MTL structures important for memory formation. There is limited evidence for interactions between encoding processes and consolidation effects in humans, but recent studies of consolidation in rodents have emphasized the importance of encoding "tags" for determining the impact of consolidation manipulations on memory. Here, we used functional magnetic resonance imaging in humans to test the hypothesis that the effects of post-encoding stress depend on MTL processes observed during encoding. We found that changes in stress hormone levels were associated with an increase in the contingency of memory outcomes on hippocampal and amygdala encoding responses. That is, for participants showing high cortisol reactivity, memories became more dependent on MTL activity observed during encoding, thereby shifting the distribution of recollected events toward those that had elicited relatively high activation. Surprisingly, this effect was generally larger for neutral, compared to emotionally negative, memories. The results suggest that stress does not uniformly enhance memory, but instead selectively preserves memories tagged during encoding, effectively acting as mnemonic filter. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.
A canonical decomposition for linear operators and linear relations
Hassi, S.; Sebestyén, Z.; Snoo, H.S.V. de; Szafraniec, F.H.
An arbitrary linear relation (multivalued operator) acting from one Hilbert space to another Hilbert space is shown to be the sum of a closable operator and a singular relation whose closure is the Cartesian product of closed subspaces. This decomposition can be seen as an analog of the Lebesgue
Advanced statistics: linear regression, part II: multiple linear regression.
Marill, Keith A
2004-01-01
The applications of simple linear regression in medical research are limited, because in most situations, there are multiple relevant predictor variables. Univariate statistical techniques such as simple linear regression use a single predictor variable, and they often may be mathematically correct but clinically misleading. Multiple linear regression is a mathematical technique used to model the relationship between multiple independent predictor variables and a single dependent outcome variable. It is used in medical research to model observational data, as well as in diagnostic and therapeutic studies in which the outcome is dependent on more than one factor. Although the technique generally is limited to data that can be expressed with a linear function, it benefits from a well-developed mathematical framework that yields unique solutions and exact confidence intervals for regression coefficients. Building on Part I of this series, this article acquaints the reader with some of the important concepts in multiple regression analysis. These include multicollinearity, interaction effects, and an expansion of the discussion of inference testing, leverage, and variable transformations to multivariate models. Examples from the first article in this series are expanded on using a primarily graphic, rather than mathematical, approach. The importance of the relationships among the predictor variables and the dependence of the multivariate model coefficients on the choice of these variables are stressed. Finally, concepts in regression model building are discussed.
The linear-non-linear frontier for the Goldstone Higgs
Energy Technology Data Exchange (ETDEWEB)
Gavela, M.B.; Saa, S. [IFT-UAM/CSIC, Universidad Autonoma de Madrid, Departamento de Fisica Teorica y Instituto de Fisica Teorica, Madrid (Spain); Kanshin, K. [Universita di Padova, Dipartimento di Fisica e Astronomia ' G. Galilei' , Padua (Italy); INFN, Padova (Italy); Machado, P.A.N. [IFT-UAM/CSIC, Universidad Autonoma de Madrid, Departamento de Fisica Teorica y Instituto de Fisica Teorica, Madrid (Spain); Fermi National Accelerator Laboratory, Theoretical Physics Department, Batavia, IL (United States)
2016-12-15
The minimal SO(5)/SO(4) σ-model is used as a template for the ultraviolet completion of scenarios in which the Higgs particle is a low-energy remnant of some high-energy dynamics, enjoying a (pseudo) Nambu-Goldstone-boson ancestry. Varying the σ mass allows one to sweep from the perturbative regime to the customary non-linear implementations. The low-energy benchmark effective non-linear Lagrangian for bosons and fermions is obtained, determining as well the operator coefficients including linear corrections. At first order in the latter, three effective bosonic operators emerge which are independent of the explicit soft breaking assumed. The Higgs couplings to vector bosons and fermions turn out to be quite universal: the linear corrections are proportional to the explicit symmetry-breaking parameters. Furthermore, we define an effective Yukawa operator which allows a simple parametrization and comparison of different heavy-fermion ultraviolet completions. In addition, one particular fermionic completion is explored in detail, obtaining the corresponding leading low-energy fermionic operators. (orig.)
Olfactory bulb encoding during learning under anaesthesia
Directory of Open Access Journals (Sweden)
Alister U Nicol
2014-06-01
Full Text Available Neural plasticity changes within the olfactory bulb are important for olfactory learning, although how neural encoding changes support new associations with specific odours and whether they can be investigated under anaesthesia, remain unclear. Using the social transmission of food preference olfactory learning paradigm in mice in conjunction with in vivo microdialysis sampling we have shown firstly that a learned preference for a scented food odour smelled on the breath of a demonstrator animal occurs under isofluorane anaesthesia. Furthermore, subsequent exposure to this cued odour under anaesthesia promotes the same pattern of increased release of glutamate and GABA in the olfactory bulb as previously found in conscious animals following olfactory learning, and evoked GABA release was positively correlated with the amount of scented food eaten. In a second experiment, multiarray (24 electrodes electrophysiological recordings were made from olfactory bulb mitral cells under isofluorane anaesthesia before, during and after a novel scented food odour was paired with carbon disulfide. Results showed significant increases in overall firing frequency to the cued-odour during and after learning and decreases in response to an uncued odour. Analysis of patterns of changes in individual neurons revealed that a substantial proportion (>50% of them significantly changed their response profiles during and after learning with most of those previously inhibited becoming excited. A large number of cells exhibiting no response to the odours prior to learning were either excited or inhibited afterwards. With the uncued odour many previously responsive cells became unresponsive or inhibited. Learning associated changes only occurred in the posterior part of the olfactory bulb. Thus olfactory learning under anaesthesia promotes extensive, but spatially distinct, changes in mitral cell networks to both cued and uncued odours as well as in evoked glutamate and
Encoding Cortical Dynamics in Sparse Features
Directory of Open Access Journals (Sweden)
Sheraz eKhan
2014-05-01
Full Text Available Distributed cortical solutions of magnetoencephalography (MEG and electroencephalography (EEG exhibit complex spatial and temporal dynamics. The extraction of patterns of interest and dynamic features from these cortical signals has so far relied on the expertise of investigators. There is a definite need in both clinical and neuroscience research for a method that will extract critical features from high-dimensional neuroimaging data in an automatic fashion. We have previously demonstrated the use of optical flow techniques for evaluating the kinematic properties of motion field projected on non-flat manifolds like in a cortical surface. We have further extended this framework to automatically detect features in the optical flow vector field by using the modified and extended 2-Riemannian Helmholtz Hodge Decomposition (HHD. Here, we applied these mathematical models on simulation and MEG data recorded from a healthy individual during a somatosensory experiment and an epilepsy pediatric patient during sleep. We tested whether our technique can automatically extract salient dynamical features of cortical activity. Simulation results indicated that we can precisely reproduce the simulated cortical dynamics with HHD; encode them in sparse features and represent the propagation of brain activity between distinct cortical areas. Using HHD, we decoded the somatosensory N20 component into two HHD features and represented the dynamics of brain activity as a traveling source between two primary somatosensory regions. In the epilepsy patient, we displayed the propagation of the epileptiform activity around the margins of a brain lesion. Our findings indicate that HHD measures computed from cortical dynamics can: (i quantitatively access the cortical dynamics in both healthy and disease brain in terms of sparse features and dynamic brain activity propagation between distinct cortical areas, and (ii facilitate a reproducible, automated analysis of MEG
Inferential Models for Linear Regression
Directory of Open Access Journals (Sweden)
Zuoyi Zhang
2011-09-01
Full Text Available Linear regression is arguably one of the most widely used statistical methods in applications. However, important problems, especially variable selection, remain a challenge for classical modes of inference. This paper develops a recently proposed framework of inferential models (IMs in the linear regression context. In general, an IM is able to produce meaningful probabilistic summaries of the statistical evidence for and against assertions about the unknown parameter of interest and, moreover, these summaries are shown to be properly calibrated in a frequentist sense. Here we demonstrate, using simple examples, that the IM framework is promising for linear regression analysis --- including model checking, variable selection, and prediction --- and for uncertain inference in general.
Bayes linear statistics, theory & methods
Goldstein, Michael
2007-01-01
Bayesian methods combine information available from data with any prior information available from expert knowledge. The Bayes linear approach follows this path, offering a quantitative structure for expressing beliefs, and systematic methods for adjusting these beliefs, given observational data. The methodology differs from the full Bayesian methodology in that it establishes simpler approaches to belief specification and analysis based around expectation judgements. Bayes Linear Statistics presents an authoritative account of this approach, explaining the foundations, theory, methodology, and practicalities of this important field. The text provides a thorough coverage of Bayes linear analysis, from the development of the basic language to the collection of algebraic results needed for efficient implementation, with detailed practical examples. The book covers:The importance of partial prior specifications for complex problems where it is difficult to supply a meaningful full prior probability specification...
Linearization: Geometric, Complex, and Conditional
Directory of Open Access Journals (Sweden)
Asghar Qadir
2012-01-01
Full Text Available Lie symmetry analysis provides a systematic method of obtaining exact solutions of nonlinear (systems of differential equations, whether partial or ordinary. Of special interest is the procedure that Lie developed to transform scalar nonlinear second-order ordinary differential equations to linear form. Not much work was done in this direction to start with, but recently there have been various developments. Here, first the original work of Lie (and the early developments on it, and then more recent developments based on geometry and complex analysis, apart from Lie’s own method of algebra (namely, Lie group theory, are reviewed. It is relevant to mention that much of the work is not linearization but uses the base of linearization.
Linear programming foundations and extensions
Vanderbei, Robert J
2001-01-01
Linear Programming: Foundations and Extensions is an introduction to the field of optimization. The book emphasizes constrained optimization, beginning with a substantial treatment of linear programming, and proceeding to convex analysis, network flows, integer programming, quadratic programming, and convex optimization. The book is carefully written. Specific examples and concrete algorithms precede more abstract topics. Topics are clearly developed with a large number of numerical examples worked out in detail. Moreover, Linear Programming: Foundations and Extensions underscores the purpose of optimization: to solve practical problems on a computer. Accordingly, the book is coordinated with free efficient C programs that implement the major algorithms studied: -The two-phase simplex method; -The primal-dual simplex method; -The path-following interior-point method; -The homogeneous self-dual methods. In addition, there are online JAVA applets that illustrate various pivot rules and variants of the simplex m...
Window observers for linear systems
Directory of Open Access Journals (Sweden)
Utkin Vadim
2000-01-01
Full Text Available Given a linear system x ˙ = A x + B u with output y = C x and a window function ω ( t , i.e., ∀ t , ω ( t ∈ {0,1 }, and assuming that the window function is Lebesgue measurable, we refer to the following observer, x ˆ = A x + B u + ω ( t L C ( x − x ˆ as a window observer. The stability issue is treated in this paper. It is proven that for linear time-invariant systems, the window observer can be stabilized by an appropriate design under a very mild condition on the window functions, albeit for linear time-varying system, some regularity of the window functions is required to achieve observer designs with the asymptotic stability. The corresponding design methods are developed. An example is included to illustrate the possible applications
Uniqueness theorems in linear elasticity
Knops, Robin John
1971-01-01
The classical result for uniqueness in elasticity theory is due to Kirchhoff. It states that the standard mixed boundary value problem for a homogeneous isotropic linear elastic material in equilibrium and occupying a bounded three-dimensional region of space possesses at most one solution in the classical sense, provided the Lame and shear moduli, A and J1 respectively, obey the inequalities (3 A + 2 J1) > 0 and J1>O. In linear elastodynamics the analogous result, due to Neumann, is that the initial-mixed boundary value problem possesses at most one solution provided the elastic moduli satisfy the same set of inequalities as in Kirchhoffs theorem. Most standard textbooks on the linear theory of elasticity mention only these two classical criteria for uniqueness and neglect altogether the abundant literature which has appeared since the original publications of Kirchhoff. To remedy this deficiency it seems appropriate to attempt a coherent description ofthe various contributions made to the study of uniquenes...
Permafrost Hazards and Linear Infrastructure
Stanilovskaya, Julia; Sergeev, Dmitry
2014-05-01
The international experience of linear infrastructure planning, construction and exploitation in permafrost zone is being directly tied to the permafrost hazard assessment. That procedure should also consider the factors of climate impact and infrastructure protection. The current global climate change hotspots are currently polar and mountain areas. Temperature rise, precipitation and land ice conditions change, early springs occur more often. The big linear infrastructure objects cross the territories with different permafrost conditions which are sensitive to the changes in air temperature, hydrology, and snow accumulation which are connected to climatic dynamics. One of the most extensive linear structures built on permafrost worldwide are Trans Alaskan Pipeline (USA), Alaska Highway (Canada), Qinghai-Xizang Railway (China) and Eastern Siberia - Pacific Ocean Oil Pipeline (Russia). Those are currently being influenced by the regional climate change and permafrost impact which may act differently from place to place. Thermokarst is deemed to be the most dangerous process for linear engineering structures. Its formation and development depend on the linear structure type: road or pipeline, elevated or buried one. Zonal climate and geocryological conditions are also of the determining importance here. All the projects are of the different age and some of them were implemented under different climatic conditions. The effects of permafrost thawing have been recorded every year since then. The exploration and transportation companies from different countries maintain the linear infrastructure from permafrost degradation in different ways. The highways in Alaska are in a good condition due to governmental expenses on annual reconstructions. The Chara-China Railroad in Russia is under non-standard condition due to intensive permafrost response. Standards for engineering and construction should be reviewed and updated to account for permafrost hazards caused by the
Electrophysiological Anomalies in Face–Name Memory Encoding in Young Binge Drinkers
Directory of Open Access Journals (Sweden)
Rocío Folgueira-Ares
2017-11-01
Full Text Available A growing body of evidence indicates that the intake of large amounts of alcohol during one session may have structural and functional effects on the still-maturing brains of young people. These effects are particularly pronounced in prefrontal and hippocampal regions, which appear to be especially sensitive to the neurotoxic effects of alcohol. However, to date, few studies have used the event-related potentials (ERPs technique to analyze the relationship between binge drinking (BD and associative memory. The objective of this study was to examine brain activity during memory encoding using the Subsequent memory paradigm in subjects who have followed a BD pattern of alcohol consumption for at least 2 years. A total of 50 undergraduate students (mean age = 20.6 years, i.e., 25 controls (12 females and 25 binge drinkers (BDs; 11 females, with no personal or family history of alcoholism or psychopathological disorders, performed a visual face–name association memory task. The task used enables assessment of the Difference due to memory effect (Dm, a measure of memory encoding based on comparison of the neural activity associated with subsequent successful and unsuccessful retrieval. In ERP studies, study items that are subsequently remembered elicit larger positive amplitudes at midline parieto-frontal sites than those items that are subsequently forgotten. The Dm effect generally appears in the latency range of about 300–800 ms. The results showed a Dm effect in posterior regions in the 350–650 ms latency range in the Control group. However, in the BD group, no significant differences were observed in the electrophysiological brain activity between remembered and forgotten items during the encoding process. No differences between groups were found in behavioral performance. These findings show that young BDs display abnormal pattern of ERP brain activity during the encoding phase of a visual face–name association task
Dose-to-duration encoding and signaling beyond saturation in intracellular signaling networks.
Directory of Open Access Journals (Sweden)
Marcelo Behar
2008-10-01
Full Text Available The cellular response elicited by an environmental cue typically varies with the strength of the stimulus. For example, in the yeast Saccharomyces cerevisiae, the concentration of mating pheromone determines whether cells undergo vegetative growth, chemotropic growth, or mating. This implies that the signaling pathways responsible for detecting the stimulus and initiating a response must transmit quantitative information about the intensity of the signal. Our previous experimental results suggest that yeast encode pheromone concentration as the duration of the transmitted signal. Here we use mathematical modeling to analyze possible biochemical mechanisms for performing this "dose-to-duration" conversion. We demonstrate that modulation of signal duration increases the range of stimulus concentrations for which dose-dependent responses are possible; this increased dynamic range produces the counterintuitive result of "signaling beyond saturation" in which dose-dependent responses are still possible after apparent saturation of the receptors. We propose a mechanism for dose-to-duration encoding in the yeast pheromone pathway that is consistent with current experimental observations. Most previous investigations of information processing by signaling pathways have focused on amplitude encoding without considering temporal aspects of signal transduction. Here we demonstrate that dose-to-duration encoding provides cells with an alternative mechanism for processing and transmitting quantitative information about their surrounding environment. The ability of signaling pathways to convert stimulus strength into signal duration results directly from the nonlinear nature of these systems and emphasizes the importance of considering the dynamic properties of signaling pathways when characterizing their behavior. Understanding how signaling pathways encode and transmit quantitative information about the external environment will not only deepen our
Fiber-Optic Strain Sensors With Linear Characteristics
Egalon, Claudio O.; Rogowski, Robert S.
1993-01-01
Fiber-optic modal domain strain sensors having linear characteristics over wide range of strains proposed. Conceived in effort to improve older fiber-optic strain sensors. Linearity obtained by appropriate choice of design parameters. Pattern of light and dark areas at output end of optical fiber produced by interference between electromagnetic modes in which laser beam propagates in fiber. Photodetector monitors intensity at one point in pattern.
Efficient estimation of the partly linear additive Cox model
Huang, Jian
1999-01-01
The partly linear additive Cox model is an extension of the (linear) Cox model and allows flexible modeling of covariate effects semiparametrically. We study asymptotic properties of the maximum partial likelihood estimator of this model with right-censored data using polynomial splines. We show that, with a range of choices of the smoothing parameter (the number of spline basis functions) required for estimation of the nonparametric components, the estimator of the finite-d...
Invariance principles for linear processes with application to isotonic regression
Dedecker, Jérôme; Merlevède, Florence; Peligrad, Magda
2009-01-01
In this paper, we prove maximal inequalities and study the functional central limit theorem for the partial sums of linear processes generated by dependent innovations. Due to the general weights, these processes can exhibit long-range dependence and the limiting distribution is a fractional Brownian motion. The proofs are based on new approximations by a linear process with martingale difference innovations. The results are then applied to study an estimator of the isotonic regression when t...
Linear latent variable models: the lava-package
DEFF Research Database (Denmark)
Holst, Klaus Kähler; Budtz-Jørgensen, Esben
2013-01-01
An R package for specifying and estimating linear latent variable models is presented. The philosophy of the implementation is to separate the model specification from the actual data, which leads to a dynamic and easy way of modeling complex hierarchical structures. Several advanced features...... interface covering a broad range of non-linear generalized structural equation models is described. The model and software are demonstrated in data of measurements of the serotonin transporter in the human brain....
Basic linear partial differential equations
Treves, Francois
1975-01-01
Focusing on the archetypes of linear partial differential equations, this text for upper-level undergraduates and graduate students features most of the basic classical results. The methods, however, are decidedly nontraditional: in practically every instance, they tend toward a high level of abstraction. This approach recalls classical material to contemporary analysts in a language they can understand, as well as exploiting the field's wealth of examples as an introduction to modern theories.The four-part treatment covers the basic examples of linear partial differential equations and their
Passive longitudinal phase space linearizer
Directory of Open Access Journals (Sweden)
P. Craievich
2010-03-01
Full Text Available We report on the possibility to passively linearize the bunch compression process in electron linacs for the next generation x-ray free electron lasers. This can be done by using the monopole wakefields in a dielectric-lined waveguide. The optimum longitudinal voltage loss over the length of the bunch is calculated in order to compensate both the second-order rf time curvature and the second-order momentum compaction terms. Thus, the longitudinal phase space after the compression process is linearized up to a fourth-order term introduced by the convolution between the bunch and the monopole wake function.
Generalized, Linear, and Mixed Models
McCulloch, Charles E; Neuhaus, John M
2011-01-01
An accessible and self-contained introduction to statistical models-now in a modernized new editionGeneralized, Linear, and Mixed Models, Second Edition provides an up-to-date treatment of the essential techniques for developing and applying a wide variety of statistical models. The book presents thorough and unified coverage of the theory behind generalized, linear, and mixed models and highlights their similarities and differences in various construction, application, and computational aspects.A clear introduction to the basic ideas of fixed effects models, random effects models, and mixed m
Permanents, bosons and linear optics
Vlasov, Alexander Yu
2017-10-01
The particular complexity of linear quantum optical networks has received certain deserved attention recently due to the possible implications for the theory of quantum computation. Two relevant boson models are discussed in the presented work. The symmetric product of the Hilbert spaces produces a rather abstract model; the second one is obtained by quantization of the harmonic oscillator. In contrast to the considered bosonic processes, the so-called ‘fermionic linear optics’ is effectively simulated on a classical computer. The comparison of the bosonic and fermionic case clarifies the controversy, and the more elaborate oscillator model provides a deeper analogy.
Correct Linearization of Einstein's Equations
Directory of Open Access Journals (Sweden)
Rabounski D.
2006-06-01
Full Text Available Regularly Einstein's equations can be reduced to a wave form (linearly dependent from the second derivatives of the space metric in the absence of gravitation, the space rotation and Christoffel's symbols. As shown here, the origin of the problem is that one uses the general covariant theory of measurement. Here the wave form of Einstein's equations is obtained in the terms of Zelmanov's chronometric invariants (physically observable projections on the observer's time line and spatial section. The obtained equations depend on solely the second derivatives even if gravitation, the space rotation and Christoffel's symbols. The correct linearization proves: the Einstein equations are completely compatible with weak waves of the metric.
Preconditioning Large Indefinite Linear Systems
Directory of Open Access Journals (Sweden)
Giovanni Fasano
2011-04-01
Full Text Available After briefly recalling some relevant approaches for preconditioning large symmetric linear systems, we describe a novel class of preconditioners. Our proposal is tailored for large indefinite linear systems, which arise very frequently in many different contexts of numerical analysis and nonlinear optimization. Our preconditioners are built as a byproduct of the Krylov subspace method used to solve the system. We describe theoretical properties of the proposed class of preconditioners, namely their capability of both shifting some eigenvalues of the system’s matrix to controlled values, and reducing the modulus of the other ones. The results of a numerical experimentation give evidence of the good performance of our proposal.
Basic linear partial differential equations
Treves, Francois
2006-01-01
Focusing on the archetypes of linear partial differential equations, this text for upper-level undergraduates and graduate students features most of the basic classical results. The methods, however, are decidedly nontraditional: in practically every instance, they tend toward a high level of abstraction. This approach recalls classical material to contemporary analysts in a language they can understand, as well as exploiting the field's wealth of examples as an introduction to modern theories.The four-part treatment covers the basic examples of linear partial differential equations and their
Topics in computational linear optimization
DEFF Research Database (Denmark)
Hultberg, Tim Helge
2000-01-01
of high quality solvers and the use of algebraic modelling systems to handle the communication between the modeller and the solver. This dissertation features four topics in computational linear optimization: A) automatic reformulation of mixed 0/1 linear programs, B) direct solution of sparse unsymmetric...... of an augmented system is computed. This involves the solution of a sparse triangular system with 's' right-hand sides. Solution sparsity is exploited in the sparse triangular solves of the block LU factorization. 3) a factorization of the Schur complement matrix, of order 's', is computed. The idea...
KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light
Karen S Sarkisyan; Zlobovskaya, Olga A.; Gorbachev, Dmitry A.; Bozhanova, Nina G.; Sharonov, George V.; Staroverov, Dmitriy B; Egorov, Evgeny S.; Ryabova, Anastasia V.; Solntsev, Kyril M.; Alexander S. Mishin; Lukyanov, Konstantin A.
2015-01-01
Genetically encoded photosensitizers, proteins that produce reactive oxygen species when illuminated with visible light, are increasingly used as optogenetic tools. Their applications range from ablation of specific cell populations to precise optical inactivation of cellular proteins. Here, we report an orange mutant of red fluorescent protein KillerRed that becomes toxic when illuminated with blue or green light. This new protein, KillerOrange, carries a tryptophan-based chromophore that is...
Linear covariance analysis for gimbaled pointing systems
Christensen, Randall S.
Linear covariance analysis has been utilized in a wide variety of applications. Historically, the theory has made significant contributions to navigation system design and analysis. More recently, the theory has been extended to capture the combined effect of navigation errors and closed-loop control on the performance of the system. These advancements have made possible rapid analysis and comprehensive trade studies of complicated systems ranging from autonomous rendezvous to vehicle ascent trajectory analysis. Comprehensive trade studies are also needed in the area of gimbaled pointing systems where the information needs are different from previous applications. It is therefore the objective of this research to extend the capabilities of linear covariance theory to analyze the closed-loop navigation and control of a gimbaled pointing system. The extensions developed in this research include modifying the linear covariance equations to accommodate a wider variety of controllers. This enables the analysis of controllers common to gimbaled pointing systems, with internal states and associated dynamics as well as actuator command filtering and auxiliary controller measurements. The second extension is the extraction of power spectral density estimates from information available in linear covariance analysis. This information is especially important to gimbaled pointing systems where not just the variance but also the spectrum of the pointing error impacts the performance. The extended theory is applied to a model of a gimbaled pointing system which includes both flexible and rigid body elements as well as input disturbances, sensor errors, and actuator errors. The results of the analysis are validated by direct comparison to a Monte Carlo-based analysis approach. Once the developed linear covariance theory is validated, analysis techniques that are often prohibitory with Monte Carlo analysis are used to gain further insight into the system. These include the creation
Parametric excitation of a linear oscillator
Butikov, Eugene I.
2004-07-01
The phenomenon of parametric resonance is explained and investigated both analytically and with the help of a computer simulation. Parametric excitation is studied for the example of the rotary oscillations of a simple linear system—mechanical torsion spring pendulum excited by periodic variations of its moment of inertia. Conditions and characteristics of parametric resonance and regeneration are found and discussed in detail. Ranges of frequencies within which parametric excitation is possible are determined. Stationary oscillations at the boundaries of these ranges are investigated. The simulation experiments aid greatly an understanding of basic principles and peculiarities of parametric excitation and complement the analytical study of the subject in a manner that is mutually reinforcing.
Parametric excitation of a linear oscillator
Energy Technology Data Exchange (ETDEWEB)
Butikov, Eugene I [St Petersburg State University, St Petersburg (Russian Federation)
2004-07-16
The phenomenon of parametric resonance is explained and investigated both analytically and with the help of a computer simulation. Parametric excitation is studied for the example of the rotary oscillations of a simple linear system-mechanical torsion spring pendulum excited by periodic variations of its moment of inertia. Conditions and characteristics of parametric resonance and regeneration are found and discussed in detail. Ranges of frequencies within which parametric excitation is possible are determined. Stationary oscillations at the boundaries of these ranges are investigated. The simulation experiments aid greatly an understanding of basic principles and peculiarities of parametric excitation and complement the analytical study of the subject in a manner that is mutually reinforcing.
Linear canonical transforms theory and applications
Kutay, M; Ozaktas, Haldun; Sheridan, John
2016-01-01
This book provides a clear and accessible introduction to the essential mathematical foundations of linear canonical transforms from a signals and systems perspective. Substantial attention is devoted to how these transforms relate to optical systems and wave propagation. There is extensive coverage of sampling theory and fast algorithms for numerically approximating the family of transforms. Chapters on topics ranging from digital holography to speckle metrology provide a window on the wide range of applications. This volume will serve as a reference for researchers in the fields of image and signal processing, wave propagation, optical information processing and holography, optical system design and modeling, and quantum optics. It will be of use to graduate students in physics and engineering, as well as for scientists in other areas seeking to learn more about this important yet relatively unfamiliar class of integral transformations.
Spike train encoding by regular-spiking cells of the visual cortex.
Carandini, M; Mechler, F; Leonard, C S; Movshon, J A
1996-11-01
1. To study the encoding of input currents into output spike trains by regular-spiking cells, we recorded intracellularly from slices of the guinea pig visual cortex while injecting step, sinusoidal, and broadband noise currents. 2. When measured with sinusoidal currents, the frequency tuning of the spike responses was markedly band-pass. The preferred frequency was between 8 and 30 Hz, and grew with stimulus amplitude and mean intensity. 3. Stimulation with broadband noise currents dramatically enhanced the gain of the spike responses at low and high frequencies, yielding an essentially flat frequency tuning between 0.1 and 130 Hz. 4. The averaged spike responses to sinusoidal currents exhibited two nonlinearities: rectification and spike synchronization. By contrast, no nonlinearity was evident in the averaged responses to broadband noise stimuli. 5. These properties of the spike responses were not present in the membrane potential responses. The latter were roughly linear, and their frequency tuning was low-pass and well fit by a single-compartment passive model of the cell membrane composed of a resistance and a capacitance in parallel (RC circuit). 6. To account for the spike responses, we used a "sandwich model" consisting of a low-pass linear filter (the RC circuit), a rectification nonlinearity, and a high-pass linear filter. The model is described by six parameters and predicts analog firing rates rather than discrete spikes. It provided satisfactory fits to the firing rate responses to steps, sinusoids, and broadband noise currents. 7. The properties of spike encoding are consistent with temporal nonlinearities of the visual responses in V1, such as the dependence of response frequency tuning and latency on stimulus contrast and bandwidth. We speculate that one of the roles of the high-frequency membrane potential fluctuations observed in vivo could be to amplify and linearize the responses to lower, stimulus-related frequencies.
Effortful Retrieval Reduces Hippocampal Activity and Impairs Incidental Encoding
Reas, Emilie T.; Brewer, James B.
2013-01-01
Functional imaging studies frequently report that the hippocampus is engaged by successful episodic memory retrieval. However, considering that concurrent encoding of the background environment occurs during retrieval and influences medial temporal lobe activity, it is plausible that hippocampal encoding functions are reduced with increased attentional engagement during effortful retrieval. Expanding upon evidence that retrieval efforts suppress activity in hippocampal regions implicated in e...
Variation in the strength of lexical encoding across dialects
Clapper, Cynthia G.; Tamati, Terrin N.; Pierrehumbert, Janet B.
Lexical processing is slower and less accurate for unfamiliar dialects than familiar dialects. The goal of the current study was to test the hypothesis that dialect differences in lexical processing reflect differences in lexical encoding strength across dialects. Lexical encoding (i.e., updating
On The Designed And Constructed Feedback Shift-Register Encoder
African Journals Online (AJOL)
Information transmission in noisy channels can be achieved with vanishingly small probability of error by proper coding of the information as long as the encoding rate is less than the channel capacity. An encoder capable of cyclical shifting of data, and which can therefore be used for Bose-Chaudhuri and Hocquenghem ...
Hierarchical Encoding of Behavior: Translating Perception into Action
Hard, Bridgette Martin; Lozano, Sandra C.; Tversky, Barbara
2006-01-01
People encode goal-directed behaviors, such as assembling an object, by segmenting them into discrete actions, organized as goal-subgoal hierarchies. Does hierarchical encoding contribute to observational learning? Participants in 3 experiments segmented an object assembly task into coarse and fine units of action and later performed it…
Practical encoders for controlling nonlinear systems under communication constraints
Persis, Claudio De; Nešić, Dragan
2008-01-01
We introduce a new class of dynamic encoders for continuous-time nonlinear control systems which update their parameters only at discrete times. We prove that the information reconstructed from the encoded feedback can be used to deliver a piece-wise constant control law which yields semi-global
Multiple channel secure communication using chaotic system encoding
Energy Technology Data Exchange (ETDEWEB)
Miller, S.L.
1996-12-31
fA new method to encrypt signals using chaotic systems has been developed that offers benefits over conventional chaotic encryption methods. The method simultaneously encodes multiple plaintext streams using a chaotic system; a key is required to extract the plaintext from the chaotic cipertext. A working prototype demonstrates feasibility of the method by simultaneously encoding and decoding multiple audio signals using electrical circuits.
Polypeptides having laccase activity and polynucleotides encoding same
Energy Technology Data Exchange (ETDEWEB)
Liu, Ye; Tang, Lan; Duan, Junxin; Zhang, Yu
2017-08-22
The present invention relates to isolated polypeptides having laccase activity and polynucleotides encoding the polypeptides and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.
Directory of Open Access Journals (Sweden)
Wikberg Jarl ES
2010-06-01
Full Text Available Abstract Background Protein kinases play crucial roles in cell growth, differentiation, and apoptosis. Abnormal function of protein kinases can lead to many serious diseases, such as cancer. Kinase inhibitors have potential for treatment of these diseases. However, current inhibitors interact with a broad variety of kinases and interfere with multiple vital cellular processes, which causes toxic effects. Bioinformatics approaches that can predict inhibitor-kinase interactions from the chemical properties of the inhibitors and the kinase macromolecules might aid in design of more selective therapeutic agents, that show better efficacy and lower toxicity. Results We applied proteochemometric modelling to correlate the properties of 317 wild-type and mutated kinases and 38 inhibitors (12,046 inhibitor-kinase combinations to the respective combination's interaction dissociation constant (Kd. We compared six approaches for description of protein kinases and several linear and non-linear correlation methods. The best performing models encoded kinase sequences with amino acid physico-chemical z-scale descriptors and used support vector machines or partial least- squares projections to latent structures for the correlations. Modelling performance was estimated by double cross-validation. The best models showed high predictive ability; the squared correlation coefficient for new kinase-inhibitor pairs ranging P2 = 0.67-0.73; for new kinases it ranged P2kin = 0.65-0.70. Models could also separate interacting from non-interacting inhibitor-kinase pairs with high sensitivity and specificity; the areas under the ROC curves ranging AUC = 0.92-0.93. We also investigated the relationship between the number of protein kinases in the dataset and the modelling results. Using only 10% of all data still a valid model was obtained with P2 = 0.47, P2kin = 0.42 and AUC = 0.83. Conclusions Our results strongly support the applicability of proteochemometrics for kinome
Linear concentration system; Sistema de concentracion lineal
Energy Technology Data Exchange (ETDEWEB)
Gonzalez Lugo, J.I; Leon Rovira, N; Aguayo Tellez, H [Instituto Tecnologico y de Estudios Superiores de Monterrey, Monterrey, Nuevo Leon (Mexico)]. E-mails: a00812662@itesm.mx; noel.leon@itesm.mx; haguayo@itesm.mx
2013-03-15
Solar linear concentration technologies to generate high temperatures are limited to the ranges of 200 to 500 degrees Celsius. While its performance has been tested through prototypes and pilot plants around the world, there are still areas of opportunity that can be exploited to obtain a linear concentration that achieves temperatures above this range in order to have a better use of the available solar energy. Because of this: It is possible to develop a linear concentration system that can track the sun with minimal movement of the absorber-receiver while maintaining temperatures above 850 degrees Celsius sufficient for industrial processes that require that temperature. The methodology consists of a series of stages (conceptual design, simulation, evaluation, development concept, results and validation) through which concepts are generated that allow design and evaluation of solar concentrator configurations with the help of simulation software. We have designed a linear parabolic concentrating system which comprises a set of mirrors segments with different focal lengths that works within the range of 600 degrees Celsius; however, it is advancing in the development of a double concentration to reach 850 degrees Celsius. [Spanish] Las tecnologias de concentracion lineal solar para generar altas temperaturas se ven limitadas a los rangos de 200 a 500 grados centigrados. Si bien su funcionamiento ha sido probado a traves de prototipos y plantas piloto alrededor del mundo, aun existen areas de oportunidad que pueden ser aprovechadas para obtener un sistema de concentracion lineal que permita alcanzar temperaturas mayores a este rango para asi tener un mejor aprovechamiento de la energia solar disponible. Debido a esto: Es posible desarrollar un sistema de concentracion lineal capaz de seguir la trayectoria del Sol con minimo movimiento del absorbedor-recibidor al mismo tiempo que mantiene temperaturas superiores a los 850 grados centigrados suficientes para
Shigemune, Yayoi; Tsukiura, Takashi; Kambara, Toshimune; Kawashima, Ryuta
2014-05-01
The motivation of getting rewards or avoiding punishments reinforces learning behaviors. Although the neural mechanisms underlying the effect of rewards on episodic memory have been demonstrated, there is little evidence of the effect of punishments on this memory. Our functional magnetic resonance imaging (fMRI) study investigated the effects of monetary rewards and punishments on activation during the encoding of source memories. During encoding, participants memorized words (item) and locations of presented words (source) under 3 conditions (Reward, Punishment, and Control). During retrieval, participants retrieved item and source memories of the words and were rewarded or penalized according to their performance. Source memories encoded with rewards or punishments were remembered better than those without such encoding. fMRI data demonstrated that the ventral tegmental area and substantia nigra and nucleus accumbens activations reflected both the processes of reward and punishment, whereas insular activation increased as a linear function of punishment. Activation in the hippocampus and parahippocampal cortex predicted subsequent retrieval success of source memories. Additionally, correlations between these reward/punishment-related regions and the hippocampus were significant. The successful encoding of source memories could be enhanced by punishments and rewards, and interactions between reward/punishment-related regions and memory-related regions could contribute to memory enhancement by reward and/or punishment.
Tsukiura, Takashi; Cabeza, Roberto
2010-01-01
Behavioral data have shown that attractive faces are better remembered but the neural mechanisms of this effect are largely unknown. To investigate this issue, female participants were scanned with event-related functional MRI (fMRI) while rating the attractiveness of male faces. Memory for the faces was tested after fMRI scanning and was used to identify successful encoding activity (subsequent memory paradigm). As expected, attractive faces were remembered better than other faces. The study yielded three main fMRI findings. First, activity in the right orbitofrontal cortex increased linearly as a function of attractiveness ratings. Second, activity in the left hippocampus increased as a function of subsequent memory (subsequent misses
The Influence of Mexican Hat Recurrent Connectivity on Noise Correlations and Stimulus Encoding
Directory of Open Access Journals (Sweden)
Robert Meyer
2017-05-01
Full Text Available Noise correlations are a common feature of neural responses and have been observed in many cortical areas across different species. These correlations can influence information processing by enhancing or diminishing the quality of the neural code, but the origin of these correlations is still a matter of controversy. In this computational study we explore the hypothesis that noise correlations are the result of local recurrent excitatory and inhibitory connections. We simulated two-dimensional networks of adaptive spiking neurons with local connection patterns following Gaussian kernels. Noise correlations decay with distance between neurons but are only observed if the range of excitatory connections is smaller than the range of inhibitory connections (“Mexican hat” connectivity and if the connection strengths are sufficiently strong. These correlations arise from a moving blob-like structure of evoked activity, which is absent if inhibitory interactions have a smaller range (“inverse Mexican hat” connectivity. Spatially structured external inputs fixate these blobs to certain locations and thus effectively reduce noise correlations. We further investigated the influence of these network configurations on stimulus encoding. On the one hand, the observed correlations diminish information about a stimulus encoded by a network. On the other hand, correlated activity allows for more precise encoding of stimulus information if the decoder has only access to a limited amount of neurons.
Convolutional over Recurrent Encoder for Neural Machine Translation
Directory of Open Access Journals (Sweden)
Dakwale Praveen
2017-06-01
Full Text Available Neural machine translation is a recently proposed approach which has shown competitive results to traditional MT approaches. Standard neural MT is an end-to-end neural network where the source sentence is encoded by a recurrent neural network (RNN called encoder and the target words are predicted using another RNN known as decoder. Recently, various models have been proposed which replace the RNN encoder with a convolutional neural network (CNN. In this paper, we propose to augment the standard RNN encoder in NMT with additional convolutional layers in order to capture wider context in the encoder output. Experiments on English to German translation demonstrate that our approach can achieve significant improvements over a standard RNN-based baseline.
Review of Random Phase Encoding in Volume Holographic Storage
Directory of Open Access Journals (Sweden)
Wei-Chia Su
2012-09-01
Full Text Available Random phase encoding is a unique technique for volume hologram which can be applied to various applications such as holographic multiplexing storage, image encryption, and optical sensing. In this review article, we first review and discuss diffraction selectivity of random phase encoding in volume holograms, which is the most important parameter related to multiplexing capacity of volume holographic storage. We then review an image encryption system based on random phase encoding. The alignment of phase key for decryption of the encoded image stored in holographic memory is analyzed and discussed. In the latter part of the review, an all-optical sensing system implemented by random phase encoding and holographic interconnection is presented.
Principles of metadata organization at the ENCODE data coordination center.
Hong, Eurie L; Sloan, Cricket A; Chan, Esther T; Davidson, Jean M; Malladi, Venkat S; Strattan, J Seth; Hitz, Benjamin C; Gabdank, Idan; Narayanan, Aditi K; Ho, Marcus; Lee, Brian T; Rowe, Laurence D; Dreszer, Timothy R; Roe, Greg R; Podduturi, Nikhil R; Tanaka, Forrest; Hilton, Jason A; Cherry, J Michael
2016-01-01
The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/). Database URL: www.encodeproject.org. © The Author(s) 2016. Published by Oxford University Press.
Pharmaceutical applications of non-linear imaging.
Strachan, Clare J; Windbergs, Maike; Offerhaus, Herman L
2011-09-30
Non-linear optics encompasses a range of optical phenomena, including two- and three-photon fluorescence, second harmonic generation (SHG), sum frequency generation (SFG), difference frequency generation (DFG), third harmonic generation (THG), coherent anti-Stokes Raman scattering (CARS), and stimulated Raman scattering (SRS). The combined advantages of using these phenomena for imaging complex pharmaceutical systems include chemical and structural specificities, high optical spatial and temporal resolutions, no requirement for labels, and the ability to image in an aqueous environment. These features make such imaging well suited for a wide range of pharmaceutical and biopharmaceutical investigations, including material and dosage form characterisation, dosage form digestion and drug release, and drug and nanoparticle distribution in tissues and within live cells. In this review, non-linear optical phenomena used in imaging will be introduced, together with their advantages and disadvantages in the pharmaceutical context. Research on pharmaceutical and biopharmaceutical applications is discussed, and potential future applications of the technology are considered. Copyright © 2010 Elsevier B.V. All rights reserved.
Energy Technology Data Exchange (ETDEWEB)
Macrae, K.I.; Riegert, R.J. (Maryland Univ., College Park (USA). Center for Theoretical Physics)
1984-10-01
We consider a theory in which fermionic matter interacts via long-range scalar, vector and tensor fields. In order not to be in conflict with experiment, the scalar and vector couplings for a given fermion must be equal, as is natural in a dimensionally reduced model. Assuming that the Sun is not approximately neutral with respect to these new scalar-vector charges, and if the couplings saturate the experimental bounds, then their strength can be comparable to that of gravity. Scalar-vector fields of this strength can compensate for a solar quadrupole moment contribution to Mercury's anomalous perihelion precession.
Linear modeling of glacier fluctuations
Oerlemans, J.|info:eu-repo/dai/nl/06833656X
2012-01-01
In this contribution a linear first-order differential equation is used to model glacier length fluctuations. This equation has two parameters describing the physical characteristics of a glacier: the climate sensitivity, expressing how the equilibrium glacier length depends on the climatic state,
175 Years of Linear Programming
Indian Academy of Sciences (India)
Home; Journals; Resonance – Journal of Science Education; Volume 4; Issue 5. 175 Years of Linear Programming - Pune's Gift. Vijay Chandru M R Rao. Series Article Volume 4 Issue 5 May 1999 pp 31-39. Fulltext. Click here to view fulltext PDF. Permanent link: http://www.ias.ac.in/article/fulltext/reso/004/05/0031-0039 ...
175 Years of Linear Programming
Indian Academy of Sciences (India)
Home; Journals; Resonance – Journal of Science Education; Volume 4; Issue 10. 175 Years of Linear Programming - Max Flow = Min Cut. Vijay Chandru M R Rao. Series Article Volume 4 Issue 10 October 1999 pp 22-39. Fulltext. Click here to view fulltext PDF. Permanent link:
175 Years of Linear Programming
Indian Academy of Sciences (India)
The simplex method has been the veritable work- horse of linear programming for five decades now. An elegant geometric interpretation of the simplex method can be visualised by viewing the animation of the algorithm in a column space representation. In fact, it is this interpretation that explains why it is called the simplex ...
Linearization of Conservative Nonlinear Oscillators
Belendez, A.; Alvarez, M. L.; Fernandez, E.; Pascual, I.
2009-01-01
A linearization method of the nonlinear differential equation for conservative nonlinear oscillators is analysed and discussed. This scheme is based on the Chebyshev series expansion of the restoring force which allows us to obtain a frequency-amplitude relation which is valid not only for small but also for large amplitudes and, sometimes, for…
DEFF Research Database (Denmark)
Andersen, O. Krogh
1975-01-01
-independent augmented plane waves (APW) and muffin-tin orbitals (MTO), respectively. The secular equations are therefore eigenvalue equations, linear in energy. The trial functions are defined with respect to a muffin-tin (MT) potential and the energy bands depend on the potential in the spheres through potential...
(+)-marmesin—a linear dihydrofuranocoumarin
Indian Academy of Sciences (India)
Unknown
Abstract. The title compound, C14H14O4, a linear dihydrofuranocoumarin, was isolated from the bark of. Aegle marmelos, a plant widely used in Ayurvedic system of medicine for the treatment of various ailments. The crystal structure was determined from X-ray diffraction data using direct methods. The compound crys-.
Squares of Random Linear Codes
DEFF Research Database (Denmark)
Cascudo Pueyo, Ignacio; Cramer, Ronald; Mirandola, Diego
2015-01-01
Given a linear code $C$, one can define the $d$-th power of $C$ as the span of all componentwise products of $d$ elements of $C$. A power of $C$ may quickly fill the whole space. Our purpose is to answer the following question: does the square of a code ``typically'' fill the whole space? We give...
175 Years of Linear Programming
Indian Academy of Sciences (India)
in mathematical modeling. Solving such a system is the es- sential task of linear programming. We now describe an elegant syntactic method for this problem known as Fourier elimination. The essential idea in the variable elimination technique is to derive implied equations/inequalities in which one or more variables are ...
Introduction to RF linear accelerators
Pichoff, N
2006-01-01
After a short introduction to applications of RF linacs and their advantages and drawbacks as opposed to circular accelerators, the model of RF resonant cavities and their excitation by RF sources or beam is introduced. Then beam dynamics notions, essential to linacs, such as transit-time factor, synchronism, r.m.s. properties, matching and mismatching in linear or nonlinear forces, are presented.
Inequality constrained normal linear models
Klugkist, I.G.|info:eu-repo/dai/nl/27330089X
2005-01-01
This dissertation deals with normal linear models with inequality constraints among model parameters. It consists of an introduction and four chapters that are papers submitted for publication. The first chapter introduces the use of inequality constraints. Scientists often have one or more theories
McSharry, Brian P.; Avdic, Selmir; Slobedman, Barry
2012-01-01
Human cytomegalovirus (HCMV), the largest human herpesvirus, infects a majority of the world’s population. Like all herpesviruses, following primary productive infection, HCMV establishes a life-long latent infection, from which it can reactivate years later to produce new, infectious virus. Despite the presence of a massive and sustained anti-HCMV immune response, productively infected individuals can shed virus for extended periods of time, and once latent infection is established, it is never cleared from the host. It has been proposed that HCMV must therefore encode functions which help to evade immune mediated clearance during productive virus replication and latency. Molecular mimicry is a strategy used by many viruses to subvert and regulate anti-viral immunity and HCMV has hijacked/developed a range of functions that imitate host encoded immunomodulatory proteins. This review will focus on the HCMV encoded homologs of cellular cytokines/chemokines and their receptors, with an emphasis on how these virus encoded homologs may facilitate viral evasion of immune clearance. PMID:23202490
Characteristic and intermingled neocortical circuits encode different visual object discriminations.
Zhang, Guo-Rong; Zhao, Hua; Cook, Nathan; Svestka, Michael; Choi, Eui M; Jan, Mary; Cook, Robert G; Geller, Alfred I
2017-07-28
Synaptic plasticity and neural network theories hypothesize that the essential information for advanced cognitive tasks is encoded in specific circuits and neurons within distributed neocortical networks. However, these circuits are incompletely characterized, and we do not know if a specific discrimination is encoded in characteristic circuits among multiple animals. Here, we determined the spatial distribution of active neurons for a circuit that encodes some of the essential information for a cognitive task. We genetically activated protein kinase C pathways in several hundred spatially-grouped glutamatergic and GABAergic neurons in rat postrhinal cortex, a multimodal associative area that is part of a distributed circuit that encodes visual object discriminations. We previously established that this intervention enhances accuracy for specific discriminations. Moreover, the genetically-modified, local circuit in POR cortex encodes some of the essential information, and this local circuit is preferentially activated during performance, as shown by activity-dependent gene imaging. Here, we mapped the positions of the active neurons, which revealed that two image sets are encoded in characteristic and different circuits. While characteristic circuits are known to process sensory information, in sensory areas, this is the first demonstration that characteristic circuits encode specific discriminations, in a multimodal associative area. Further, the circuits encoding the two image sets are intermingled, and likely overlapping, enabling efficient encoding. Consistent with reconsolidation theories, intermingled and overlapping encoding could facilitate formation of associations between related discriminations, including visually similar discriminations or discriminations learned at the same time or place. Copyright © 2017 Elsevier B.V. All rights reserved.