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Sample records for puumala virus southwestern

  1. Puumala virus in bank voles, Lithuania

    Czech Academy of Sciences Publication Activity Database

    Straková, Petra; Jagdmann, S.; Balčiauskas, L.; Balčiauskienė, L.; Drewes, S.; Ulrich, R. G.

    2017-01-01

    Roč. 23, č. 1 (2017), s. 158-160 ISSN 1080-6040 Institutional support: RVO:68081766 Keywords : Puumala virus * animal experiment * Lithuania * Myodes glareolus * nonhuman Subject RIV: EE - Microbiology, Virology OBOR OECD: Infectious Diseases Impact factor: 8.222, year: 2016

  2. Dynamics of Puumala virus infection in bank voles in Ardennes department (France).

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    Augot, D; Muller, D; Demerson, J M; Boué, F; Caillot, C; Cliquet, F

    2006-12-01

    The hantaviruses (genus Hantavirus, family Bunyaviridae) include human pathogens and occur worldwide. In Western and Central Europe, the predominant serotype is Puumala (PUU) virus, which causes epidemic nephropathy. Voles are considered to be the main reservoir and the vector of PUU virus. A total of 719 rodents (mainly Clethrionomys glareolus, Apodemus sp.) trapped by capture-mark-recapture (CMR) in four sites in Ardennes department (France) between April 2004 and October 2005 were tested for the presence of PUU virus antibodies by enzyme-linked immunosorbent assay (ELISA). The predominant species, C. glareolus (86.5% [622 of 719]), also had the highest antibody prevalence (37.6% [291 of 773]). In C. glareolus, the antibody prevalence rate increased with age (weight) in site A, B and D, reaching more than 50% in the heaviest weight, and suggesting that horizontal infection may be important.

  3. [Nephropathy due to Puumala hantavirus].

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    Dandolo, A; Prajs, N; Lizop, M

    2014-12-01

    Hemorrhagic fever with renal syndrome (HFRS) is due to an infection by the virus of the Hantavirus genus. Rodent hosts of Hantavirus are present in restricted areas in France; consequently, there are ecological niches and microepidemics of human Hantavirus infections. A HFRS case was diagnosed in the Paris region. The 11-year-old child had an acute debut fever-persistent despite antipyretic medication-asthenia, headache, abdominal pain, myalgia, thrombocytopenia, as well as renal failure with proteinuria. The diagnosis was made with a relevant clinical history and the specific serology of Puumala hantavirus. Therefore, a kidney biopsy was not necessary. What was interesting was the diagnostic approach because of the difference between the place and time of contamination and where the child became ill and developed the symptoms. The child was infected by Puumala hantavirus in Les Ardennes, a high-risk area, but became ill in the Paris region, an area with no prevalence. We review Hantavirus infections in France and its differential diagnosis. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

  4. Identification of Dobrava, Hantaan, Seoul, and Puumala viruses by one-step real-time RT-PCR.

    Science.gov (United States)

    Aitichou, Mohamed; Saleh, Sharron S; McElroy, Anita K; Schmaljohn, C; Ibrahim, M Sofi

    2005-03-01

    We developed four assays for specifically identifying Dobrava (DOB), Hantaan (HTN), Puumala (PUU), and Seoul (SEO) viruses. The assays are based on the real-time one-step reverse transcriptase polymerase chain reaction (RT-PCR) with the small segment used as the target sequence. The detection limits of DOB, HTN, PUU, and SEO assays were 25, 25, 25, and 12.5 plaque-forming units, respectively. The assays were evaluated in blinded experiments, each with 100 samples that contained Andes, Black Creek Canal, Crimean-Congo hemorrhagic fever, Rift Valley fever and Sin Nombre viruses in addition to DOB, HTN, PUU and SEO viruses. The sensitivity levels of the DOB, HTN, PUU, and SEO assays were 98%, 96%, 92% and 94%, respectively. The specificity of DOB, HTN and SEO assays was 100% and the specificity of the PUU assay was 98%. Because of the high levels of sensitivity, specificity, and reproducibility, we believe that these assays can be useful for diagnosing and differentiating these four Old-World hantaviruses.

  5. Puumala hantavirus infections in bank vole populations: host and virus dynamics in Central Europe.

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    Reil, Daniela; Rosenfeld, Ulrike M; Imholt, Christian; Schmidt, Sabrina; Ulrich, Rainer G; Eccard, Jana A; Jacob, Jens

    2017-02-28

    In Europe, bank voles (Myodes glareolus) are widely distributed and can transmit Puumala virus (PUUV) to humans, which causes a mild to moderate form of haemorrhagic fever with renal syndrome, called nephropathia epidemica. Uncovering the link between host and virus dynamics can help to prevent human PUUV infections in the future. Bank voles were live trapped three times a year in 2010-2013 in three woodland plots in each of four regions in Germany. Bank vole population density was estimated and blood samples collected to detect PUUV specific antibodies. We demonstrated that fluctuation of PUUV seroprevalence is dependent not only on multi-annual but also on seasonal dynamics of rodent host abundance. Moreover, PUUV infection might affect host fitness, because seropositive individuals survived better from spring to summer than uninfected bank voles. Individual space use was independent of PUUV infections. Our study provides robust estimations of relevant patterns and processes of the dynamics of PUUV and its rodent host in Central Europe, which are highly important for the future development of predictive models for human hantavirus infection risk.

  6. Molecular evolution of Puumala hantavirus in Fennoscandia: phylogenetic analysis of strains from two recolonization routes

    DEFF Research Database (Denmark)

    Asikainen, Kari; Hänninen, Tarja; Henttonen, Heikki

    2000-01-01

    Like other members of the genus Hantavirus in the family Bunyaviridae, Puumala virus (PUUV) is thought to be co-evolving with its natural host, the bank vole Clethrionomys glareolus. To gain insight into the evolutionary history of PUUV in northern Europe during the last post-glacial period, we h...

  7. Climate Variability and the Occurrence of Human Puumala Hantavirus Infections in Europe: A Systematic Review.

    Science.gov (United States)

    Roda Gracia, J; Schumann, B; Seidler, A

    2015-09-01

    Hantaviruses are distributed worldwide and are transmitted by rodents. In Europe, the infection usually manifests as a mild form of haemorrhagic fever with renal syndrome (HFRS) known as nephropathia epidemica (NE), which is triggered by the virus species Puumala. Its host is the bank vole (Myodes glareolus). In the context of climate change, interest in the role of climatic factors for the disease has increased. A systematic review was conducted to investigate the association between climate variability and the occurrence of human Puumala hantavirus infections in Europe. We performed a literature search in the databases MEDLINE, EMBASE and Web of Science. Studies that investigated Puumala virus infection and climatic factors in any European country with a minimum collection period of 2 years were included. The selection of abstracts and the evaluation of included studies were performed by two independent reviewers. A total of 434 titles were identified in the databases, of which nine studies fulfilled the inclusion criteria. The majority of studies were conducted in central Europe (Belgium, France and Germany), while only two came from the north (Sweden) and one from the south (Bosnia). Strong evidence was found for a positive association between temperature and NE incidence in central Europe, while the evidence for northern Europe so far appears insufficient. Results regarding precipitation were contradictory. Overall, the complex relationships between climate and hantavirus infections need further exploration to identify specific health risks and initiate appropriate intervention measures in the context of climate change. © 2014 Blackwell Verlag GmbH.

  8. Spatial and temporal patterns of human Puumala virus (PUUV infections in Germany

    Directory of Open Access Journals (Sweden)

    Sarah Cunze

    2018-02-01

    Full Text Available Background Worldwide, the number of recorded human hantavirus infections as well as the number of affected countries is on the rise. In Europe, most human hantavirus infections are caused by the Puumala virus (PUUV, with bank voles (Myodes glareolus as reservoir hosts. Generally, infection outbreaks have been related to environmental conditions, particularly climatic conditions, food supply for the reservoir species and land use. However, although attempts have been made, the insufficient availability of environmental data is often hampering accurate temporal and spatially explicit models of human hantavirus infections. Methods In the present study, dynamics of human PUUV infections between 2001 and 2015 were explored using ArcGIS in order to identify spatio-temporal patterns. Results Percentage cover of forest area was identified as an important factor for the spatial pattern, whereas beech mast was found explaining temporal patterns of human PUUV infections in Germany. High numbers of infections were recorded in 2007, 2010 and 2012 and areas with highest records were located in Baden-Wuerttemberg (southwest Germany and North Rhine-Westphalia (western Germany. Conclusion More reliable data on reservoir host distribution, pathogen verification as well as an increased awareness of physicians are some of the factors that should improve future human infection risk assessments in Germany.

  9. Tula and Puumala hantavirus NSs ORFs are functional and the products inhibit activation of the interferon-beta promoter.

    Science.gov (United States)

    Jääskeläinen, Kirsi M; Kaukinen, Pasi; Minskaya, Ekaterina S; Plyusnina, Angelina; Vapalahti, Olli; Elliott, Richard M; Weber, Friedemann; Vaheri, Antti; Plyusnin, Alexander

    2007-10-01

    The S RNA genome segment of hantaviruses carried by Arvicolinae and Sigmodontinae rodents encodes the nucleocapsid (N) protein and has an overlapping (+1) open reading frame (ORF) for a putative nonstructural protein (NSs). The aim of this study was to determine whether the ORF is functional. A protein corresponding to the predicted size of Tula virus (TULV) NSs was detected using coupled in vitro transcription and translation from a cloned S segment cDNA, and a protein corresponding to the predicted size of Puumala virus (PUUV) NSs was detected in infected cells by Western blotting with an anti-peptide serum. The activities of the interferon beta (IFN-beta) promoter, and nuclear factor kappa B (NF-kappaB)- and interferon regulatory factor-3 (IRF-3) responsive promoters, were inhibited in COS-7 cells transiently expressing TULV or PUUV NSs. Also IFN-beta mRNA levels in IFN-competent MRC5 cells either infected with TULV or transiently expressing NSs were decreased. These data demonstrate that Tula and Puumala hantaviruses have a functional NSs ORF. The findings may explain why the NSs ORF has been preserved in the genome of most hantaviruses during their long evolution and why hantavirus-infected cells secrete relatively low levels of IFNs. (c) 2007 Wiley-Liss, Inc.

  10. Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution.

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    Szabó, Róbert; Radosa, Lukáš; Ličková, Martina; Sláviková, Monika; Heroldová, Marta; Stanko, Michal; Pejčoch, Milan; Osterberg, Anja; Laenen, Lies; Schex, Susanne; Ulrich, Rainer G; Essbauer, Sandra; Maes, Piet; Klempa, Boris

    2017-12-01

    Puumala virus (PUUV), carried by bank voles (Myodes glareolus), is the medically most important hantavirus in Central and Western Europe. In this study, a total of 523 bank voles (408 from Germany, 72 from Slovakia, and 43 from Czech Republic) collected between the years 2007-2012 were analyzed for the presence of hantavirus RNA. Partial PUUV genome segment sequences were obtained from 51 voles. Phylogenetic analyses of all three genome segments showed that the newfound strains cluster with other Central and Western European PUUV strains. The new sequences from Šumava (Bohemian Forest), Czech Republic, are most closely related to the strains from the neighboring Bavarian Forest, a known hantavirus disease outbreak region. Interestingly, the Slovak strains clustered with the sequences from Bohemian and Bavarian Forests only in the M but not S segment analyses. This well-supported topological incongruence suggests a segment reassortment event or, as we analyzed only partial sequences, homologous recombination. Our data highlight the necessity of sequencing all three hantavirus genome segments and of a broader bank vole screening not only in recognized endemic foci but also in regions with no reported human hantavirus disease cases.

  11. Concomitant influence of helminth infection and landscape on the distribution of Puumala hantavirus in its reservoir, Myodes glareolus.

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    Salvador, Alexis Ribas; Guivier, Emmanuel; Xuéreb, Anne; Chaval, Yannick; Cadet, Patrice; Poulle, Marie-Lazarine; Sironen, Tarja; Voutilainen, Liina; Henttonen, Heikki; Cosson, Jean-François; Charbonnel, Nathalie

    2011-02-08

    Puumala virus, the agent of nephropathia epidemica (NE), is the most prevalent hantavirus in Europe. The risk for human infection seems to be strongly correlated with the prevalence of Puumala virus (PUUV) in populations of its reservoir host species, the bank vole Myodes glareolus. In humans, the infection risks of major viral diseases are affected by the presence of helminth infections. We therefore proposed to analyse the influence of both helminth community and landscape on the prevalence of PUUV among bank vole populations in the Ardennes, a PUUV endemic area in France. Among the 313 voles analysed, 37 had anti-PUUV antibodies. Twelve gastro-intestinal helminth species were recorded among all voles sampled. We showed that PUUV seroprevalence strongly increased with age or sexual maturity, especially in the northern forests (massif des Ardennes). The helminth community structure significantly differed between this part and the woods or hedgerows of the southern cretes pre-ardennaises. Using PUUV RNA quantification, we identified significant coinfections between PUUV and gastro-intestinal helminths in the northern forests only. More specifically, PUUV infection was positively associated with the presence of Heligmosomum mixtum, and in a lesser extent, Aonchotheca muris-sylvatici. The viral load of PUUV infected individuals tended to be higher in voles coinfected with H. mixtum. It was significantly lower in voles coinfected with A. muris-sylvatici, reflecting the influence of age on these latter infections. This is the first study to emphasize hantavirus--helminth coinfections in natural populations. It also highlights the importance to consider landscape when searching for such associations. We have shown that landscape characteristics strongly influence helminth community structure as well as PUUV distribution. False associations might therefore be evidenced if geographic patterns of helminths or PUUV repartition are not previously identified. Moreover, our

  12. An amino-terminal segment of hantavirus nucleocapsid protein presented on hepatitis B virus core particles induces a strong and highly cross-reactive antibody response in mice

    International Nuclear Information System (INIS)

    Geldmacher, Astrid; Skrastina, Dace; Petrovskis, Ivars; Borisova, Galina; Berriman, John A.; Roseman, Alan M.; Crowther, R. Anthony; Fischer, Jan; Musema, Shamil; Gelderblom, Hans R.; Lundkvist, Aake; Renhofa, Regina; Ose, Velta; Krueger, Detlev H.; Pumpens, Paul; Ulrich, Rainer

    2004-01-01

    Previously, we have demonstrated that hepatitis B virus (HBV) core particles tolerate the insertion of the amino-terminal 120 amino acids (aa) of the Puumala hantavirus nucleocapsid (N) protein. Here, we demonstrate that the insertion of 120 amino-terminal aa of N proteins from highly virulent Dobrava and Hantaan hantaviruses allows the formation of chimeric core particles. These particles expose the inserted foreign protein segments, at least in part, on their surface. Analysis by electron cryomicroscopy of chimeric particles harbouring the Puumala virus (PUUV) N segment revealed 90% T = 3 and 10% T = 4 shells. A map computed from T = 3 shells shows additional density splaying out from the tips of the spikes producing the effect of an extra shell of density at an outer radius compared with wild-type shells. The inserted Puumala virus N protein segment is flexibly linked to the core spikes and only partially icosahedrally ordered. Immunisation of mice of two different haplotypes (BALB/c and C57BL/6) with chimeric core particles induces a high-titered and highly cross-reactive N-specific antibody response in both mice strains

  13. Beech Fructification and Bank Vole Population Dynamics--Combined Analyses of Promoters of Human Puumala Virus Infections in Germany.

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    Daniela Reil

    Full Text Available The transmission of wildlife zoonoses to humans depends, amongst others, on complex interactions of host population ecology and pathogen dynamics within host populations. In Europe, the Puumala virus (PUUV causes nephropathia epidemica in humans. In this study we investigated complex interrelations within the epidemic system of PUUV and its rodent host, the bank vole (Myodes glareolus. We suggest that beech fructification and bank vole abundance are both decisive factors affecting human PUUV infections. While rodent host dynamics are expected to be directly linked to human PUUV infections, beech fructification is a rather indirect predictor by serving as food source for PUUV rodent hosts. Furthermore, we examined the dependence of bank vole abundance on beech fructification. We analysed a 12-year (2001-2012 time series of the parameters: beech fructification (as food resource for the PUUV host, bank vole abundance and human incidences from 7 Federal States of Germany. For the first time, we could show the direct interrelation between these three parameters involved in human PUUV epidemics and we were able to demonstrate on a large scale that human PUUV infections are highly correlated with bank vole abundance in the present year, as well as beech fructification in the previous year. By using beech fructification and bank vole abundance as predictors in one model we significantly improved the degree of explanation of human PUUV incidence. Federal State was included as random factor because human PUUV incidence varies considerably among states. Surprisingly, the effect of rodent abundance on human PUUV infections is less strong compared to the indirect effect of beech fructification. Our findings are useful to facilitate the development of predictive models for host population dynamics and the related PUUV infection risk for humans and can be used for plant protection and human health protection purposes.

  14. Concomitant influence of helminth infection and landscape on the distribution of Puumala hantavirus in its reservoir, Myodes glareolus

    Directory of Open Access Journals (Sweden)

    Henttonen Heikki

    2011-02-01

    Full Text Available Abstract Background Puumala virus, the agent of nephropathia epidemica (NE, is the most prevalent hantavirus in Europe. The risk for human infection seems to be strongly correlated with the prevalence of Puumala virus (PUUV in populations of its reservoir host species, the bank vole Myodes glareolus. In humans, the infection risks of major viral diseases are affected by the presence of helminth infections. We therefore proposed to analyse the influence of both helminth community and landscape on the prevalence of PUUV among bank vole populations in the Ardennes, a PUUV endemic area in France. Results Among the 313 voles analysed, 37 had anti-PUUV antibodies. Twelve gastro-intestinal helminth species were recorded among all voles sampled. We showed that PUUV seroprevalence strongly increased with age or sexual maturity, especially in the northern forests (massif des Ardennes. The helminth community structure significantly differed between this part and the woods or hedgerows of the southern cretes pre-ardennaises. Using PUUV RNA quantification, we identified significant coinfections between PUUV and gastro-intestinal helminths in the northern forests only. More specifically, PUUV infection was positively associated with the presence of Heligmosomum mixtum, and in a lesser extent, Aonchotheca muris-sylvatici. The viral load of PUUV infected individuals tended to be higher in voles coinfected with H. mixtum. It was significantly lower in voles coinfected with A. muris-sylvatici, reflecting the influence of age on these latter infections. Conclusions This is the first study to emphasize hantavirus - helminth coinfections in natural populations. It also highlights the importance to consider landscape when searching for such associations. We have shown that landscape characteristics strongly influence helminth community structure as well as PUUV distribution. False associations might therefore be evidenced if geographic patterns of helminths or PUUV

  15. Environmental conditions and Puumala virus transmission in Belgium

    DEFF Research Database (Denmark)

    Linard, Catherine; Tersago, Katrien; Leirs, Herwig

    2007-01-01

    of this study is to better understand the causal link between environmental features and PUUV prevalence in bank vole population in Belgium, and hence with transmission risk to humans. Our hypothesis was that environmental conditions controlling the direct and indirect transmission paths differ....... Based on logistic regressions, we show that PUUV prevalence among bank voles is more linked to variables favouring the survival of the virus in the environment, and thus the indirect transmission: low winter temperatures are strongly linked to prevalence among bank voles, and high soil moisture...... is linked to the number of NE cases among humans. The transmission risk to humans therefore depends on the efficiency of the indirect transmission path. Human risk behaviours, such as the propensity for people to go in forest areas that best support the virus, also influence the number of human cases...

  16. Population, Environmental, and Community Effects on Local Bank Vole (Myodes glareolus) Puumala Virus Infection in an Area with Low Human Incidence

    DEFF Research Database (Denmark)

    Tersago, K; Schreurs, A; Linard, C

    2008-01-01

    In this study, the distribution of Puumala hantavirus (PUUV) infection in local bank vole Myodes glareolus populations in an area with low human PUUV infection (nephropathia epidemica [NE]) incidence in northern Belgium was monitored for 2 consecutive years. Bank voles were trapped in preferred h...... activity patterns, local environmental conditions and rodent community structure are also likely to play a role in determining PUUV infection risk for humans....... habitat and tested for anti-PUUV IgG. Infection data were related to individual bank vole features, population demography, and environmental variables. Rare occurrence of PUUV infection was found and PUUV prevalence was low compared with data from the high NE incidence area in southern Belgium. Small...

  17. Detection of Puumala hantavirus antigen in human intestine during acute hantavirus infection.

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    Joerg Latus

    Full Text Available BACKGROUND: Puumala virus (PUUV is the most important hantavirus species in Central Europe. Nephropathia epidemica (NE, caused by PUUV, is characterized by acute renal injury (AKI with thrombocytopenia and frequently gastrointestinal symptoms. METHODS: 456 patients with serologically and clinically confirmed NE were investigated at time of follow-up in a single clinic. The course of the NE was investigated using medical reports. We identified patients who had endoscopy with intestinal biopsy during acute phase of NE. Histopathological, immunohistochemical and molecular analyses of the biopsies were performed. RESULTS: Thirteen patients underwent colonoscopy or gastroscopy for abdominal pain, diarrhea, nausea and vomiting during acute phase of NE. Immunohistochemistry (IHC revealed PUUV nucleocapsid antigen in 11 biopsies from 8 patients; 14 biopsies from 5 patients were negative for PUUV nucleocapsid antigen. IHC localized PUUV nucleocapsid antigen in endothelial cells of capillaries or larger vessels in the lamina propria. Rate of AKI was not higher and severity of AKI was not different in the PUUV-positive compared to the PUUV-negative group. All IHC positive biopsies were positive for PUUV RNA using RT-PCR. Phylogenetic reconstruction revealed clustering of all PUUV strains from this study with viruses previously detected from the South-West of Germany. Long-term outcome was favorable in both groups. CONCLUSIONS: In patients with NE, PUUV nucleocapsid antigen and PUUV RNA was detected frequently in the intestine. This finding could explain frequent GI-symptoms in NE patients, thus demonstration of a more generalized PUUV infection. The RT-PCR was an effective and sensitive method to detect PUUV RNA in FFPE tissues. Therefore, it can be used as a diagnostic and phylogenetic approach also for archival materials. AKI was not more often present in patients with PUUV-positive IHC. This last finding should be investigated in larger numbers of

  18. Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France.

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    Castel, Guillaume; Couteaudier, Mathilde; Sauvage, Frank; Pons, Jean-Baptiste; Murri, Séverine; Plyusnina, Angelina; Pontier, Dominique; Cosson, Jean-François; Plyusnin, Alexander; Marianneau, Philippe; Tordo, Noël

    2015-10-22

    Puumala virus (PUUV) is the agent of nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS) in Europe. NE incidence presents a high spatial variation throughout France, while the geographical distribution of the wild reservoir of PUUV, the bank vole, is rather continuous. A missing piece of the puzzle is the current distribution and the genetic variation of PUUV in France, which has been overlooked until now and remains poorly understood. During a population survey, from 2008 to 2011, bank voles were trapped in eight different forests of France located in areas known to be endemic for NE or in area from where no NE case has been reported until now. Bank voles were tested for immunoglobulin (Ig)G ELISA serology and two seropositive animals for each of three different areas (Ardennes, Jura and Orleans) were then subjected to laboratory analyses in order to sequence the whole S, M and L segments of PUUV. Phylogenetic analyses revealed that French PUUV isolates globally belong to the central European (CE) lineage although isolates from Ardennes are clearly distinct from those in Jura and Orleans, suggesting a different evolutionary history and origin of PUUV introduction in France. Sequence analyses revealed specific amino acid signatures along the N protein, including in PUUV from the Orleans region from where NE in humans has never been reported. The relevance of these mutations in term of pathophysiology is discussed.

  19. Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France

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    Guillaume Castel

    2015-10-01

    Full Text Available Puumala virus (PUUV is the agent of nephropathia epidemica (NE, a mild form of hemorrhagic fever with renal syndrome (HFRS in Europe. NE incidence presents a high spatial variation throughout France, while the geographical distribution of the wild reservoir of PUUV, the bank vole, is rather continuous. A missing piece of the puzzle is the current distribution and the genetic variation of PUUV in France, which has been overlooked until now and remains poorly understood. During a population survey, from 2008 to 2011, bank voles were trapped in eight different forests of France located in areas known to be endemic for NE or in area from where no NE case has been reported until now. Bank voles were tested for immunoglobulin (IgG ELISA serology and two seropositive animals for each of three different areas (Ardennes, Jura and Orleans were then subjected to laboratory analyses in order to sequence the whole S, M and L segments of PUUV. Phylogenetic analyses revealed that French PUUV isolates globally belong to the central European (CE lineage although isolates from Ardennes are clearly distinct from those in Jura and Orleans, suggesting a different evolutionary history and origin of PUUV introduction in France. Sequence analyses revealed specific amino acid signatures along the N protein, including in PUUV from the Orleans region from where NE in humans has never been reported. The relevance of these mutations in term of pathophysiology is discussed.

  20. Temporal variation in individual factors associated with hantavirus infection in bank voles during an epizootic: implications for Puumala virus transmission dynamics.

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    Tersago, Katrien; Verhagen, Ron; Leirs, Herwig

    2011-06-01

    Puumala virus (PUUV), the causal agent of nephropathia epidemica in humans, is one of the many hantaviruses included in the list of emerging pathogens. Hantavirus infection is not distributed evenly among PUUV reservoir hosts (i.e., bank voles [Myodes glareolus]). Besides environmental factors and local population features, individual characteristics play an important role in vole PUUV infection risk. Identifying the relative importance of these individual characteristics can provide crucial information on PUUV transmission processes. In the present study, bank voles were monitored during the nephropathia epidemica outbreak of 2005 in Belgium. Vole sera were tested for presence of immunoglobulin G against PUUV, and a logistic mixed model was built to investigate the temporal variation in individual characteristics and their relative importance to PUUV infection risk in bank voles. Relative risk calculations for individual vole characteristics related to PUUV infection in the reservoir host show that reproductive activity dominates infection risk. The gender effect is only found in reproductively active voles, where reproductively active males have the highest infection risk. Results also revealed a clear seasonal variation in the importance of reproductive activity linked to PUUV infection. In contrast to the main effect found in other trapping sessions, no difference in infection risk ratio was found between reproductively active and nonactive voles in the spring period. Combined with increased infection risk for the reproductively nonactive group at that time, these results indicate a shift in the transmission process due to changes in bank vole behavior, physiology, or climate conditions. Hence, our results suggest that mathematical models should take into account seasonal shifts in transmission mechanisms. When these results are combined with the seasonal changes in population structure during the epizootic period, we identify vole reproductive activity and

  1. Hantavirus Gn and Gc glycoproteins self-assemble into virus-like particles.

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    Acuña, Rodrigo; Cifuentes-Muñoz, Nicolás; Márquez, Chantal L; Bulling, Manuela; Klingström, Jonas; Mancini, Roberta; Lozach, Pierre-Yves; Tischler, Nicole D

    2014-02-01

    How hantaviruses assemble and exit infected cells remains largely unknown. Here, we show that the expression of Andes (ANDV) and Puumala (PUUV) hantavirus Gn and Gc envelope glycoproteins lead to their self-assembly into virus-like particles (VLPs) which were released to cell supernatants. The viral nucleoprotein was not required for particle formation. Further, a Gc endodomain deletion mutant did not abrogate VLP formation. The VLPs were pleomorphic, exposed protrusions and reacted with patient sera.

  2. Autoimmune polyendocrinopathy and hypophysitis after Puumala hantavirus infection

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    Marlene Tarvainen

    2016-11-01

    Full Text Available Puumala hantavirus (PUUV infection causes nephropathia epidemica (NE, a relatively mild form of haemorrhagic fever with renal syndrome (HFRS. Hypophyseal haemorrhage and hypopituitarism have been described in case reports on patients with acute NE. Chronic hypopituitarism diagnosed months or years after the acute illness has also been reported, without any signs of a haemorrhagic aetiology. The mechanisms leading to the late-onset hormonal defects remain unknown. Here, we present a case of NE-associated autoimmune polyendocrinopathy and hypopituitarism presumably due to autoimmune hypophysitis. Thyroid peroxidase antibody seroconversion occurred between 6 and 12 months, and ovarian as well as glutamate decarboxylase antibodies were found 18 months after acute NE. Brain MRI revealed an atrophic adenohypophysis with a heterogeneous, low signal intensity compatible with a sequela of hypophysitis. The patient developed central (or mixed central and peripheral hypothyroidism, hypogonadism and diabetes insipidus, all requiring hormonal replacement therapy. This case report suggests that late-onset hormonal defects after PUUV infection may develop by an autoimmune mechanism. This hypothesis needs to be confirmed by prospective studies with sufficient numbers of patients.

  3. Detection panel for identification of twelve hemorrhagic viruses using real-time RT-PCR.

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    Fajfr, M; Neubauerová, V; Pajer, P; Kubíčková, P; Růžek, D

    2014-09-01

    Viral hemorrhagic fevers are caused by viruses from four viral families and develop diseases with high fatality rates. However, no commercial diagnostic assay for these pathogens is available. We developed real-time RT-PCR assays for viruses Ebola, Marburg, Lassa, Guanarito, Machupo, Junin, Sabiá, Seoul, Puumala, Hantaan, Crimean-Congo hemorrhagic fever virus and Rift Valley fever virus. The assays were optimized for identical reaction conditions and can be performed using several types of real-time PCR instruments, both capillary and plate, including a portable Ruggedized Advanced Pathogen Identification Device (R.A.P.I.D.) (Idaho Technology, Inc.). In combination with primers and probes from previously published studies, we present a simple system for rapid identification of hemorrhagic filoviruses, arenaviruses and bunyaviruses with sufficient sensitivity for first contact laboratory and diagnosis under field conditions.

  4. Clinical characterization of two severe cases of hemorrhagic fever with renal syndrome (HFRS caused by hantaviruses Puumala and Dobrava-Belgrade genotype Sochi

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    Ellen Krautkrämer

    2016-11-01

    Full Text Available Abstract Background Hantavirus disease belongs to the emerging infections. The clinical picture and severity of infections differ between hantavirus species and may even vary between hantavirus genotypes. The mechanisms that lead to the broad variance of severity in infected patients are not completely understood. Host- and virus-specific factors are considered. Case presentation We analyzed severe cases of hantavirus disease in two young women. The first case was caused by Puumala virus (PUUV infection in Germany; the second case describes the infection with Dobrava-Belgrade virus (DOBV in Russia. Symptoms, laboratory parameters and cytokine levels were analyzed and compared between the two patients. Serological and sequence analysis revealed that PUUV was the infecting agent for the German patient and the infection of the Russian patient was caused by Dobrava-Belgrade virus genotype Sochi (DOBV-Sochi. The symptoms in the initial phase of the diseases did not differ noticeably between both patients. However, deterioration of laboratory parameter values was prolonged and stronger in DOBV-Sochi than in PUUV infection. Circulating endothelial progenitor cells (cEPCs, known to be responsible for endothelial repair, were mobilized in both infections. Striking differences were observed in the temporal course and level of cytokine upregulation. Levels of angiopoietin-2 (Ang-2, vascular endothelial growth factor (VEGF, and stromal derived factor-1 (SDF-1α were increased in both infections; but, sustained and more pronounced elevation was observed in DOBV-Sochi infection. Conclusions Severe hantavirus disease caused by different hantavirus species did not differ in the general symptoms and clinical characteristics. However, we observed a prolonged clinical course and a late and enhanced mobilization of cytokines in DOBV-Sochi infection. The differences in cytokine deregulation may contribute to the observed variation in the clinical course.

  5. Effect of Puumala hantavirus infection on Human Umbilical Vein Endothelial Cell hemostatic function: platelet interactions, increased tissue factor expression and fibrinolysis regulator release

    Directory of Open Access Journals (Sweden)

    Marco Goeijenbier

    2015-03-01

    Full Text Available Puumala virus (PUUV infection causes over 5000 cases of hemorrhagic fever in Europe annually and can influence the hemostatic balance extensively. Infection might lead to hemorrhage, while a recent study showed an increased risk of myocardial infarction during or shortly after PUUV infection. The mechanism by which this hantavirus influences the coagulation system remains unknown. Therefore we aimed to elucidate mechanisms explaining alterations seen in primary and secondary hemostasis during PUUV infection. By using low passage PUUV isolates to infect primary human umbilical vein endothelial cells (HUVECs we were able to show alterations in the regulation of primary- and secondary hemostasis and in the release of fibrinolysis regulators. Our main finding was an activation of secondary hemostasis due to increased tissue factor expression leading to increased thrombin generation in a functional assay. Furthermore, we showed that during infection platelets adhered to HUVECs and subsequently specifically to PUUV virus particles. Infection of HUVECs with PUUV did not result in increased von Willebrand factor while they produced more plasminogen activator inhibitor type-1 (PAI-1 compared to controls. The PAI-1 produced in this model formed complexes with vitronectin. This is the first report that reveals a potential mechanism behind the pro-coagulant changes in PUUV patients, which could be the result of increased thrombin generation due to an increased tissue factor expression on endothelial cells during infection. Furthermore, we provide insight into the contribution of endothelial cell responses regarding hemostasis in PUUV pathogenesis.

  6. Analysis of Culex and Aedes mosquitoes in southwestern Nigeria ...

    African Journals Online (AJOL)

    Introduction: Amplification and transmission of West Nile virus (WNV) by mosquitoes are driven by presence and number of viraemic/susceptible avian hosts. Methods: in order to predict risk of WNV infection to humans, we collected mosquitoes from horse stables in Lagos and Ibadan, southwestern Nigeria. The mosquitoes ...

  7. Patterns of Human Respiratory Viruses and Lack of MERS-Coronavirus in Patients with Acute Upper Respiratory Tract Infections in Southwestern Province of Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Ahmed A. Abdulhaq

    2017-01-01

    Full Text Available We undertook enhanced surveillance of those presenting with respiratory symptoms at five healthcare centers by testing all symptomatic outpatients between November 2013 and January 2014 (winter time. Nasal swabs were collected from 182 patients and screened for MERS-CoV as well as other respiratory viruses using RT-PCR and multiplex microarray. A total of 75 (41.2% of these patients had positive viral infection. MERS-CoV was not detected in any of the samples. Human rhinovirus (hRV was the most detected pathogen (40.9% followed by non-MERS-CoV human coronaviruses (19.3%, influenza (Flu viruses (15.9%, and human respiratory syncytial virus (hRSV (13.6%. Viruses differed markedly depending on age in which hRV, Flu A, and hCoV-OC43 were more prevalent in adults and RSV, hCoV-HKU1, and hCoV-NL63 were mostly restricted to children under the age of 15. Moreover, coinfection was not uncommon in this study, in which 17.3% of the infected patients had dual infections due to several combinations of viruses. Dual infections decreased with age and completely disappeared in people older than 45 years. Our study confirms that MERS-CoV is not common in the southwestern region of Saudi Arabia and shows high diversity and prevalence of other common respiratory viruses. This study also highlights the importance and contribution of enhanced surveillance systems for better infection control.

  8. Genetic and antigenic evolution of H9N2 subtype avian influenza virus in domestic chickens in southwestern China, 2013-2016.

    Directory of Open Access Journals (Sweden)

    Jing Xia

    Full Text Available H9N2 avian influenza virus (AIV has caused significant losses in chicken flocks throughout china in recent years. There is a limited understanding of the genetic and antigenic characteristics of the H9N2 virus isolated in chickens in southwestern China. In this study a total of 12 field strains were isolated from tissue samples from diseased chickens between 2013 and 2016. Phylogenetic analysis of the Hemagglutinin (HA and Neuraminidase (NA nucleotide sequences from the 12 field isolates and other reference strains showed that most of the isolates in the past four years could be clustered into a major branch (HA-branch A and NA-branch I in the Clade h9.4.2 lineages. These sequences are accompanied by nine and seven new amino acids mutations in the HA and NA proteins, respectively, when compared with those previous to 2013. In addition, four new isolates were grouped into a minor branch (HA-branch B in the Clade h9.4.2 lineages and two potential N-glycosylation sites were observed due to amino acid mutations in the HA protein. Three antigenic groups (1-3, which had low antigenic relatedness with two commonly used vaccines in China, were identified among the 12 isolates by antigenMap analysis. Immunoprotection testing showed that those two vaccines could efficiently prevent the shedding of branch A viruses but not branch B viruses. In conclusion, these results indicate the genotype of branch B may become epidemic in the next few years and that a new vaccine should be developed for the prevention of H9N2 AIV.

  9. Bovine aortic endothelial cells are susceptible to Hantaan virus infection

    International Nuclear Information System (INIS)

    Bahr, U.; Muranyi, W.; Mueller, S.; Kehm, R.; Handermann, M.; Darai, G.; Zeier, M.

    2004-01-01

    Hantavirus serotype Hantaan (HTN) is one of the causative agents of hemorrhagic fever with renal syndrome (HFRS, lethality up to 10%). The natural host of HTN is Apodemus agrarius. Recent studies have shown that domestic animals like cattle are sporadically seropositive for hantaviruses. In the present study, the susceptibility of bovine aortic endothelial cells (BAEC) expressing α V β 3 -integrin to a HTN infection was investigated. Viral nucleocapsid protein and genomic RNA segments were detected in infected BAEC by indirect immunofluorescence assay, Western blot analysis, and reverse transcription-polymerase chain reaction (RT-PCR), respectively. The results of this study strongly support our previous observation on Puumala virus (PUU) that has been propagated efficiently in BAEC. These findings open a new window to contemplate the ecology of hantavirus infection and transmission route from animal to man

  10. Seroprevalence of Marek's Disease Virus antibody in some poultry ...

    African Journals Online (AJOL)

    This study reports a survey of Marek's disease virus (MDV) antibody done in 21 selected poultry flocks in Lagos, Ogun and Oyo states of southwestern Nigeria. A total of 315 serum samples were examined using the Enzyme Linked Immunosorbent Assay (ELISA) technique. Marek's disease virus antibody was present in ...

  11. Seroepidemiological investigation of foot-and-mouth disease virus serotypes in cattle around Lake Mburo National Park in South-Western Uganda

    DEFF Research Database (Denmark)

    Mwiine, Frank Norbert; Ayebazibwe, Chrisostom; Alexandersen, Søren

    2010-01-01

    Foot-and-mouth disease (FMD) outbreaks in cattle occur annually in Uganda. In this study the authors investigated antibodies against FMD virus (FMDV) in cattle in surrounding areas of Lake Mburo National Park in South-western Uganda. Two hundred and eleven serum samples from 23 cattle herds were...... examined for the presence of antibodies against FMDV non-structural proteins and structural proteins using Ceditest® FMDV-NS and Ceditest® FMDV type O (Cedi Diagnostics BV, Lelystad, The Netherlands). Furthermore, serotype-specific antibodies against the seven serotypes of FMDV were determined using in......-house serotype-specific Solid Phase Blocking ELISAs (SPBE). Of the sera tested, 42.7% (90/211) were positive in the ELISA for antibodies against non-structural proteins, while 75.4% (159/211) had antibodies against the structural proteins of FMDV serotype O. Titres of ≥ 1:160 of serotype-specific antibodies...

  12. Phylogeographic Diversity of Pathogenic and Non-Pathogenic Hantaviruses in Slovenia

    Science.gov (United States)

    Korva, Miša; Knap, Nataša; Resman Rus, Katarina; Fajs, Luka; Grubelnik, Gašper; Bremec, Matejka; Knapič, Tea; Trilar, Tomi; Avšič Županc, Tatjana

    2013-01-01

    Slovenia is a very diverse country from a natural geography point of view, with many different habitats within a relatively small area, in addition to major geological and climatic differences. It is therefore not surprising that several small mammal species have been confirmed to harbour hantaviruses: A. flavicollis (Dobrava virus), A. agrarius (Dobrava virus–Kurkino), M. glareolus (Puumala virus), S. areanus (Seewis virus), M. agrestis, M. arvalis and M. subterraneus (Tula virus). Three of the viruses, namely the Dobrava, Dobrava–Kurkino and Puumala viruses, cause disease in humans, with significant differences in the severity of symptoms. Due to changes in haemorrhagic fever with renal syndrome cases (HFRS) epidemiology, a detailed study on phylogenetic diversity and molecular epidemiology of pathogenic and non-pathogenic hantaviruses circulating in ecologically diverse endemic regions was performed. The study presents one of the largest collections of hantavirus L, M and S sequences obtained from hosts and patients within a single country. Several genetic lineages were determined for each hantavirus species, with higher diversity among non-pathogenic compared to pathogenic viruses. For pathogenic hantaviruses, a significant geographic clustering of human- and rodent-derived sequences was confirmed. Several geographic and ecological factors were recognized as influencing and limiting the formation of endemic areas. PMID:24335778

  13. Spatial prediction and validation of zoonotic hazard through micro-habitat properties: where does Puumala hantavirus hole - up?

    Science.gov (United States)

    Khalil, Hussein; Olsson, Gert; Magnusson, Magnus; Evander, Magnus; Hörnfeldt, Birger; Ecke, Frauke

    2017-07-26

    To predict the risk of infectious diseases originating in wildlife, it is important to identify habitats that allow the co-occurrence of pathogens and their hosts. Puumala hantavirus (PUUV) is a directly-transmitted RNA virus that causes hemorrhagic fever in humans, and is carried and transmitted by the bank vole (Myodes glareolus). In northern Sweden, bank voles undergo 3-4 year population cycles, during which their spatial distribution varies greatly. We used boosted regression trees; a technique inspired by machine learning, on a 10 - year time-series (fall 2003-2013) to develop a spatial predictive model assessing seasonal PUUV hazard using micro-habitat variables in a landscape heavily modified by forestry. We validated the models in an independent study area approx. 200 km away by predicting seasonal presence of infected bank voles in a five-year-period (2007-2010 and 2015). The distribution of PUUV-infected voles varied seasonally and inter-annually. In spring, micro-habitat variables related to cover and food availability in forests predicted both bank vole and infected bank vole presence. In fall, the presence of PUUV-infected voles was generally restricted to spruce forests where cover was abundant, despite the broad landscape distribution of bank voles in general. We hypothesize that the discrepancy in distribution between infected and uninfected hosts in fall, was related to higher survival of PUUV and/or PUUV-infected voles in the environment, especially where cover is plentiful. Moist and mesic old spruce forests, with abundant cover such as large holes and bilberry shrubs, also providing food, were most likely to harbor infected bank voles. The models developed using long-term and spatially extensive data can be extrapolated to other areas in northern Fennoscandia. To predict the hazard of directly transmitted zoonoses in areas with unknown risk status, models based on micro-habitat variables and developed through machine learning techniques in

  14. Molecular Diagnostics of Hemorrhagic Fever with Renal Syndrome during a Dobrava Virus Infection Outbreak in the European Part of Russia ▿

    Science.gov (United States)

    Dzagurova, Tamara K.; Klempa, Boris; Tkachenko, Evgeniy A.; Slyusareva, Galina P.; Morozov, Vyacheslav G.; Auste, Brita; Kruger, Detlev H.

    2009-01-01

    A large outbreak of hemorrhagic fever with renal syndrome (HFRS) occurred in the winter of 2006-2007 in a region southeast of Moscow in Central European Russia. Of the 422 patients with HFRS investigated in this study, 58 patients were found to be infected by Puumala virus, whereas as many as 364 were infected by Dobrava-Belgrade virus (DOBV). Early serum samples from 10 DOBV-infected patients were used for nucleic acid amplification, which was successful for 5 patients. Molecular analyses demonstrated that the causative hantavirus belongs to the DOBV-Aa genetic lineage, which is carried by the striped field mouse (Apodemus agrarius) as the natural reservoir host. Neutralization assays with convalescent-phase sera from these patients confirmed infection by DOBV-Aa; related viruses, such as the Dobrava-Slovenia virus (DOBV-Af) and the Dobrava-Sochi virus (DOBV-Ap), were neutralized at lower efficiencies. The clinical courses of the 205 patients enrolled in the study were found to be mostly mild to moderate; however, an unexpectedly high fraction (27%) of patients exhibited severe illness. One patient died from kidney failure and showed symptoms of generalized subcutaneous hemorrhage. The results provide molecular, serodiagnostic, and clinical evidence that DOBV-Aa is a common pathogen in East Europe that causes large outbreaks of HFRS. PMID:19828747

  15. Spatial and temporal patterning of bank vole demography and the epidemiology of the Puumala hantavirus in northeastern France.

    Science.gov (United States)

    Augot, D; Sauvage, F; Boue, F; Bouloy, M; Artois, M; Demerson, J M; Combes, B; Coudrier, D; Zeller, H; Cliquet, F; Pontier, D

    2008-12-01

    Epidemiological data from bank voles, Myodes glareolus, naturally infected by the hantavirus Puumala (PUUV) were collected by a capture-mark-recapture protocol from 2000 to 2002 in the French department of Ardennes. Four monitored trapping sites were established in two forests located in two cantons (Flize and Monthermé). We captured 912 bank voles corresponding to 557 different individuals during 8820 trapping nights for an overall trapping success of 10.34%. The average PUUV seroprevalence was 22.4%. Characteristics of the system reported in North European countries are confirmed in France. PUUV seroprevalence and abundance of rodents appeared weakly linked. Adult voles were more frequently antibody-positive, but no difference between sexes was established. Anti-PUUV seropositive voles were captured and high seroprevalence was observed from both forests, without human infection reported in Flize canton during the study. One site among the four exhibited peculiar infection dynamics, where vole weight and infection risk were negatively correlated.

  16. A dynamic data based model describing nephropathia epidemica in Belgium

    NARCIS (Netherlands)

    Amirpour Haredasht, S.; Barrios, J.M.; Maes, P.; Verstraeten, W.W.; Clement, J.; Ducoffre, G.; Lagrou, K.; Van Ranst, M.; Coppin, P.; Berckmans, D.; Aerts, J.M.F.G.

    2011-01-01

    ropathia epidemica (NE) is a human infection caused by Puumala virus (PUUV), which is naturally carried and shed by bank voles (Myodes glareolus). Population dynamics and infectious diseases in general, such as NE, have often been modelled with mechanistic SIR (Susceptible, Infective and Remove with

  17. Hantavirus disease (nephropathia epidemica) in Belgium: effects of tree seed production and climate.

    Science.gov (United States)

    Tersago, K; Verhagen, R; Servais, A; Heyman, P; Ducoffre, G; Leirs, H

    2009-02-01

    Recently, human cases of nephropathia epidemica (NE) due to Puumala virus infection in Europe have increased. Following the hypothesis that high reservoir host abundance induces higher transmission rates to humans, explanations for this altered epidemiology must be sought in factors that cause bank vole (Myodes glareolus) abundance peaks. In Western Europe, these abundance peaks are often related to high tree seed production, which is supposedly triggered by specific weather conditions. We evaluated the relationship between tree seed production, climate and NE incidence in Belgium and show that NE epidemics are indeed preceded by abundant tree seed production. Moreover, a direct link between climate and NE incidence is found. High summer and autumn temperatures, 2 years and 1 year respectively before NE occurrence, relate to high NE incidence. This enables early forecasting of NE outbreaks. Since future climate change scenarios predict higher temperatures in Europe, we should regard Puumala virus as an increasing health threat.

  18. Environmental Management Audit: Southwestern Power Administration (Southwestern)

    International Nuclear Information System (INIS)

    1993-03-01

    This report documents the results of the Environmental Management Audit completed for the Southwestern Power Administration. During this Audit, activities and records were reviewed and personnel interviewed. The onsite portion of the Southwestern Audit was conducted from November 30 through December 11, 1992, by the US Department of Energy's Office of Environmental Audit (EH-24). EH-24 carries out independent assessments of Department of Energy (DOE) facilities and activities as part of the Assistant Secretary's Environmental Audit Program. This program is designed to evaluate the status of DOE facilities/activities regarding compliance with laws, regulations, DOE Orders, formal written procedures, compliance agreements, and Best Management Practices (BMPs). This internal oversight function plays an important role in improving the compliance status of DOE operations. The Environmental Management Audit stresses DOE's policy that it is the responsibility of line management to conduct operations in an environmentally sound and safe manner. The Environmental Management Audit focuses on management systems and programs, whereas the Environmental Baseline Audit conducted in March 1991 focused on specific compliance issues. The scope of the Southwestern Environmental Management Audit included a review of all systems and functions necessary for effective environmental management. Specific areas of review included: Organizational Structure; Environmental Commitment; Environmental Protection Programs; Formality of Environmental Programs; Internal and External Communication; Staff Resources, Training, and Development; and Program Evaluation, Reporting, and Corrective Action

  19. Ecological niche modelling of bank voles in Western Europe

    NARCIS (Netherlands)

    Amirpour Haredasht, S.; Barrios, J.M.; Farifteh, J.; Maes, P.; Clement, J.; Verstraeten, W.W.; Tersago, K.; Van Ranst, M.; Coppin, P.; Berckmans, D.; Aerts, J.

    2013-01-01

    The bank vole (Myodes glareolus) is the natural host of Puumala virus (PUUV) in vast areas of Europe. PUUV is one of the hantaviruses which are transmitted to humans by infected rodents. PUUV causes a general mild form of hemorrhagic fever with renal syndrome (HFRS) called nephropathia epidemica

  20. Southwestern Power Administration Annual Report 2012

    Energy Technology Data Exchange (ETDEWEB)

    None

    2013-09-01

    Dear Secretary Moniz: I am pleased to present the financial statements and operating data for Southwestern Power Administration (Southwestern) for Fiscal Year (FY) 2012. In FY 2012, Southwestern delivered over 4.1 billion kilowatt-hours of energy to its wholesale customers in Arkansas, Kansas, Louisiana, Missouri, Oklahoma, and Texas, generating $195 million in revenue. In fulfilling its mission to market and reliably deliver renewable Federal hydroelectric power, Southwestern maintains 1,380 miles of high-voltage transmission lines, substations, and communications sites, contributing to the reliability of the regional and National electric grid. Southwestern also actively partners with the Department of Energy, the U.S. Army Corps of Engineers, Southwestern’s customers, and other Federal power stakeholders to most effectively balance their diverse interests with Southwestern’s mission while continuing to maximize Federal assets to repay the Federal investment in the 24 hydropower facilities within Southwestern’s marketing region. Southwestern is proud of its past successes, and we look forward to continuing to serve the Nation’s energy needs in the future. Sincerely, Christopher M. Turner Administrator

  1. Southwestern Power Administration Annual Report 2010

    Energy Technology Data Exchange (ETDEWEB)

    None

    2012-09-01

    Dear Secretary Chu: I am pleased to present the financial statements and operating data for Southwestern Power Administration (Southwestern) for Fiscal Year (FY) 2010. In FY 2010, Southwestern delivered nearly 7.6 billion kilowatt-hours of energy to its wholesale customers in Arkansas, Kansas, Louisiana, Missouri, Texas, and Oklahoma, generating $189 million in revenue. In fulfilling its mission to market and reliably deliver renewable Federal hydroelectric power, Southwestern maintains 1,380 miles of high-voltage transmission lines, substations, and communications sites, contributing to the reliability of the regional and National electric grid. Southwestern also actively partners with the Department of Energy, the U.S. Army Corps of Engineers, Southwestern’s customers, and other Federal power stakeholders to most effectively balance their diverse interests with Southwestern’s mission while continuing to maximize Federal assets to repay the Federal investment in the 24 hydropower facilities within Southwestern’s marketing region. Southwestern is proud of its past successes, and we look forward to continuing to serve the Nation’s energy needs in the future. Sincerely, Christopher M. Turner Administrator

  2. Southwestern Power Administration Annual Report 2011

    Energy Technology Data Exchange (ETDEWEB)

    None

    2013-04-01

    Dear Secretary Chu: I am pleased to present the financial statements and operating data for Southwestern Power Administration (Southwestern) for Fiscal Year (FY) 2011. In FY 2011, Southwestern delivered over 4.1 billion kilowatt-hours of energy to its wholesale customers in Arkansas, Kansas, Louisiana, Missouri, Oklahoma, and Texas, generating $167 million in revenue. In fulfilling its mission to market and reliably deliver renewable Federal hydroelectric power, Southwestern maintains 1,380 miles of high-voltage transmission lines, substations, and communications sites, contributing to the reliability of the regional and National electric grid. Southwestern also actively partners with the Department of Energy, the U.S. Army Corps of Engineers, Southwestern’s customers, and other Federal power stakeholders to most effectively balance their diverse interests with Southwestern’s mission while continuing to maximize Federal assets to repay the Federal investment in the 24 hydropower facilities within Southwestern’s marketing region. Southwestern is proud of its past successes, and we look forward to continuing to serve the Nation’s energy needs in the future. Sincerely, Christopher M. Turner Administrator

  3. 134 original article prevalence of rubella virus-specific ...

    African Journals Online (AJOL)

    boaz

    ABSTRACT. Background: Rubella is a self-limiting disease that causes congenital rubella syndrome (CRS) when rubella virus (RV) infects women in the first trimester of pregnancy. Objective: To assess a population of pregnant women attending antenatal clinics in two tertiary hospitals in southwestern. Nigeria for anti-RV ...

  4. Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016.

    Science.gov (United States)

    Chiu, Charles Y; Coffey, Lark L; Murkey, Jamie; Symmes, Kelly; Sample, Hannah A; Wilson, Michael R; Naccache, Samia N; Arevalo, Shaun; Somasekar, Sneha; Federman, Scot; Stryke, Doug; Vespa, Paul; Schiller, Gary; Messenger, Sharon; Humphries, Romney; Miller, Steve; Klausner, Jeffrey D

    2017-10-01

    We used unbiased metagenomic next-generation sequencing to diagnose a fatal case of meningoencephalitis caused by St. Louis encephalitis virus in a patient from California in September 2016. This case is associated with the recent 2015-2016 reemergence of this virus in the southwestern United States.

  5. Prevalence of Hepatitis C virus antibody among undergraduates in ...

    African Journals Online (AJOL)

    Background: This study was conducted to determine the prevalence of hepatitis C virus antibody (anti-HCV), among a healthy university undergraduate population in south-western Nigeria. Materials and Methods: Relevant medical information of students who underwent the post-admission screening exercise for the year ...

  6. Southwestern Power Administration Update, October- December 2004

    Energy Technology Data Exchange (ETDEWEB)

    None

    2004-12-01

    On October 29, 2004, Southwestern and Southwest Power Pool, Inc. (SPP) reached agreement on interim arrangements to be implemented after the October 31, 2004, expiration of the membership agreement between the two parties. According to Jim McDonald, Director of Southwestern’s Division of Customer Service, the interim agreement forged between Southwestern and SPP seeks to minimize impacts to SPP as well as to Southwestern and its customers while Southwestern and SPP work on a seams/coordination agreement to succeed the expired membership agreement.

  7. Isolation of Intestinal Parasites of Public Health Importance from Cockroaches (Blattella germanica) in Jimma Town, Southwestern Ethiopia

    OpenAIRE

    Hamu, Haji; Debalke, Serkadis; Zemene, Endalew; Birlie, Belay; Mekonnen, Zeleke; Yewhalaw, Delenasaw

    2014-01-01

    Cockroaches are claimed to be mechanical transmitters of disease causing microorganisms such as intestinal parasites, bacteria, fungi, and viruses. This study assessed the potential of the German cockroach Blattella germanica in the mechanical transmission of intestinal parasites of public health importance. A total of 2010 cockroaches were collected from 404 households in Jimma Town, southwestern Ethiopia. All the collected cockroaches were identified to species as B. germanica. The contents...

  8. Southwestern Power Administration annual site environmental report CY 1997

    International Nuclear Information System (INIS)

    1998-01-01

    This report provides a synopsis of Southwestern Power Administration's (Southwestern's) effectiveness in managing its operations in an environmentally responsible manner. In CY 1997, the Office of Environmental, Safety, and Health was reorganized and incorporated into the Division of Acquisition and Property. The Division of Acquisition, Property, and Environmental Management maintains responsibility for development, oversight, and implementation of environmental programs. Senior Management at Southwestern has taken actions to increase environmental awareness throughout the organization. During CY 1997, (Southwestern) was not involved in any known programs or activities that had adverse impacts on the environment. The 1997 Environmental Appraisal, a portion of Southwestern's Self-Assessment and Appraisal Program, indicated approximately 90% compliance with Southwestern's written environmental programs. Southwestern continued to function throughout CY 1997 in an operations and maintenance posture with minor substation projects

  9. Association between the DQA MHC class II gene and Puumala virus infection in Myodes glareolus, the bank vole

    Czech Academy of Sciences Publication Activity Database

    Deter, J.; Bryja, Josef; Chaval, Y.; Galan, M.; Henttonen, H.; Laakkonen, J.; Voutilainen, L.; Vapalahti, O.; Vaheri, A.; Salvador, A. R.; Morand, S.; Cosson, J.-F.; Charbonnel, N.

    2008-01-01

    Roč. 8, č. 4 (2008), s. 450-458 ISSN 1567-1348 EU Projects: European Commission(XE) 10284 - EDEN Institutional research plan: CEZ:AV0Z60930519 Source of funding: R - rámcový projekt EK Keywords : Myodes (Clethrionomys) glareolus * Hantavirus * SSCP * Coinertia * Helminths * Mites * Cowpox virus Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.792, year: 2008

  10. Seroprevalence of Feline Immunodeficiency Virus (FIV among Client-owned Cats in Ahvaz, Southwestern of Iran

    Directory of Open Access Journals (Sweden)

    Bahman Mosallanejad

    2010-12-01

    Full Text Available The present study was conducted to detect prevalence and risk factors for retrovirus infection of infected cats in a cat population in Iran, by evaluation of 238 client-owned cats of different ages that were tested for the presence of FIV antibodies. The cats were selected from those referring to Veterinary Hospital of Ahvaz University, southwestern Iran from December 2007 to June 2010. Classification was made by age, sex, breed, region and season. The studied cats were divided into two age groups (≤ 3 years and >3 years and based on clinical signs into two groups. Prevalence of FIV antibodies in these cats was 10.5 % by immunochromatography assay, indicating that this virus is present in the environment. The infection had more prevalence in cats above 3 years (13.9 % compared with cats less than 3 years (4.6 %. Statistical analysis showed significant difference between different age groups. Mean age of FIV-infected and FIV-negative cats were 4.93 ± 0.43 years (range 1.75 – 10 years and 4.15 ± 0.20 years (range 0.4 – 15 years, respectively. Prevalence of infection was 12.6% in males and 8.1 % in females; nevertheless the infection was not significant between different sexes (P > 0.05. Six out of 36 cases (16.7 % which had clinical signs and 19 out of 202 cases (9.4 % which did not have clinical signs were seropositive, without significant difference between two groups (95 % CI for OR = 1.92. Risk factors for FIV infection were older age (95 % CI for OR = 3.35, access to outdoor (95 % CI for OR = 140.9 and aggressive behavior (95 % CI for OR = 82.71.

  11. The relevance of the social networking media in Ebola virus disease prevention and control in Southwestern Nigeria.

    Science.gov (United States)

    Adebimpe, Wasiu Olalekan; Adeyemi, Damilare Hakeem; Faremi, Ayodeji; Ojo, John Olujide; Efuntoye, Adeola Ebun

    2015-01-01

    The Social Media (SM) is fast becoming a huge avenue to create and spread health awareness amongst youths. Meanwhile news surrounding the on-going Ebola Virus Disease (EVD) outbreak in West Africa are frightening. This study assessed the relevance of the social networking media in spreading awareness about EVD prevention and control in Southwestern Nigeria. Descriptive cross sectional study among 400 youths selected using multistage sampling method. Research instruments used were semi structured self administered questionnaires that were analyzed using the SPSS software version 17.0. Three hundred and eighty (95.0%) of respondents were members of a social network. Several misconceptions trailed the spread of information about EVD. Though only 21(7.3%) bothered to ascertain the reliability of such information before use, 332 (83.0%) believed that SM can also be used to dispel rumours on health information, 337(84.3%) said they would like the use of SM regulated, while 206 (51.6%) still believed that SM is effective in disseminating health information among youths. Only 79.4% had good knowledge of EVD, and 30.7% of respondents had misinformation about EVD. Determinants of good level of knowledge about EVD through SM contacts include being a male, having SM as the first source of information on EVD and believing that SM could assist to disseminate and improve health information. Misconceptions spread through the SM fuelled the ongoing EVD outbreak in West Africa. There is a need for the concerned authority to create awareness through SM contacts as well as regulate its use.

  12. Cancer mortality and radioactive fallout in southwestern Utah

    International Nuclear Information System (INIS)

    Machado, S.G.; Land, C.E.; McKay, F.W.

    1987-01-01

    Cancer mortality was compared between a three-county region in southwestern Utah and the remainder of Utah in an investigation of reported excess cancer risks associated with residence in southwestern Utah during the period of above-ground nuclear tests at the Nevada Test Site. Because most of the fallout in southwestern Utah was deposited during 1953-1957, comparisons were limited to persons born before 1958, and deaths from leukemia and bone cancer during 1955-1980 and from other cancers during 1964-1980. There was no excess risk of cancer mortality in southwestern Utah, for single or grouped sites, with the single exception of leukemia which showed statistically significant odds ratios of 1.45 based on 62 deaths at all ages, and 2.84 based on nine deaths at ages 0-14. The finding for childhood leukemia was based on different time periods and geographic comparisons from those of two earlier studies in which no such excess was found. Mortality from all cancer sites combined was significantly lower in southwestern Utah than in the remainder of the state, even after adjustment for the higher proportion of (lower risk) Mormons in southwestern Utah. The present results, including the positive association for leukemia, are inconsistent with the high excess risks reported by Johnson (JAMA 1984;251:230-6) based on an interview survey of cancer incidence among long-term Mormon residents of southwestern Utah

  13. Status, ecology, and conservation of the southwestern willow flycatcher

    Science.gov (United States)

    Deborah M. Finch; Scott H. Stoleson

    2000-01-01

    This publication was prepared in response to a need expressed by southwestern agencies and organizations for a comprehensive assessment of the population status, history, biology, ecology, habitats, threats, and conservation of the southwestern willow flycatcher (Empidonax traillii extimus). The southwestern willow flycatcher was federally listed as...

  14. Southwestern Power Administration site environmental report for calendar year 1993

    International Nuclear Information System (INIS)

    1994-01-01

    During CY 93, Southwestern was not involved in any programs that had a direct effect on the environment, involving endangered species, protection of wetlands, or increased electromagnetic radiation. Southwestern continued to function throughout the year in an operations and maintenance posture with minor substation projects. Southwestern received an environmental management audit by the Department of Energy's Office of Environmental Audit (EH-24), during CY 1992. The purpose of the audit was to give Southwestern, DOE headquarters, and the Secretary an indication of the status of Southwestern management's effectiveness in discharging its duties in an environmentally responsible manner. The audit identified 17 findings. An action plan was developed and remediation of the findings has been accomplished. Several strengths were identified during the audit with regard to the environmental programs at Southwestern. Most importantly, senior management at Southwestern has taken actions to increase environmental awareness throughout the organization which is evidenced by the creation of the Environmental, Safety, Health, and Security Office

  15. Landscape genetics highlights the role of bank vole metapopulation dynamics in the epidemiology of Puumala hantavirus.

    Science.gov (United States)

    Guivier, E; Galan, M; Chaval, Y; Xuéreb, A; Ribas Salvador, A; Poulle, M-L; Voutilainen, L; Henttonen, H; Charbonnel, N; Cosson, J F

    2011-09-01

    Rodent host dynamics and dispersal are thought to be critical for hantavirus epidemiology as they determine pathogen persistence and transmission within and between host populations. We used landscape genetics to investigate how the population dynamics of the bank vole Myodes glareolus, the host of Puumala hantavirus (PUUV), vary with forest fragmentation and influence PUUV epidemiology. We sampled vole populations within the Ardennes, a French PUUV endemic area. We inferred demographic features such as population size, isolation and migration with regard to landscape configuration. We next analysed the influence of M. glareolus population dynamics on PUUV spatial distribution. Our results revealed that the global metapopulation dynamics of bank voles were strongly shaped by landscape features, including suitable patch size and connectivity. Large effective size in forest might therefore contribute to the higher observed levels of PUUV prevalence. By contrast, populations from hedge networks highly suffered from genetic drift and appeared strongly isolated from all other populations. This might result in high probabilities of local extinction for both M. glareolus and PUUV. Besides, we detected signatures of asymmetric bank vole migration from forests to hedges. These movements were likely to sustain PUUV in fragmented landscapes. In conclusion, our study provided arguments in favour of source-sink dynamics shaping PUUV persistence and spread in heterogeneous, Western European temperate landscapes. It illustrated the potential contribution of landscape genetics to the understanding of the epidemiological processes occurring at this local scale. © 2011 Blackwell Publishing Ltd.

  16. Seroprevalence of HIV, HBV, HCV, and HTLV among Pregnant Women in Southwestern Nigeria.

    Science.gov (United States)

    Opaleye, Oluyinka Oladele; Igboama, Magdalene C; Ojo, Johnson Adeyemi; Odewale, Gbolabo

    2016-01-01

    Sexually transmitted infections (STIs) are major public health challenge especially in developing countries. This study was designed to determine the prevalence of Hepatitis B virus (HBV), Hepatitis C Virus (HCV), Human immunodeficiency virus (HIV), and Human T-cell lymphotropic Virus type I (HTLV-I) among pregnant women attending antenatal clinic, in Ladoke Akintola University Teaching Hospital, Osogbo, and South-Western Nigeria. One hundred and eighty two randomly selected pregnant women were screened for HBsAg, anti-HCV, anti-HIV and HTLV-1 IgM antibodies using commercially available ELISA kit. Of the 182 blood samples of pregnant women screened whose age ranged from 15-49 years, 13 (7.1%), 5 (2.7%), 9 (4.9%), and 44 (24.2%) were positive for HBsAg, anti-HCV, anti-HIV, and HTLV-1 IgM antibodies, respectively. The co-infection rate of 0.5% was obtained for HBV/HCV, HBV/HIV, HIV/HTLV-1, and HCV/HTLV-1 while 1.1% and 0% was recorded for HBV/HTLV-1 and HCV/HIV co-infections, respectively. Expected risk factors such as history of surgery, circumcision, tattooing and incision showed no significant association with any of the viral STIs (P > 0.05). This study shows that there is the need for a comprehensive screening of all pregnant women for HBsAg, anti-HCV, anti-HIV and HTLV-1 to prevent mother to child transmission of these viral infections and its attending consequences.

  17. A case-control study after a hantavirus infection outbreak in the south of Belgium: who is at risk?

    Science.gov (United States)

    Van Loock, F; Thomas, I; Clement, J; Ghoos, S; Colson, P

    1999-04-01

    Puumala is the most common hantavirus serotype in Europe and is spread mainly by the red bank vole. Between 1 July 1992 and 31 January 1994, an outbreak of Puumala virus-induced nephropathia epidemica (NE) occurred in the Belgian Ardennes. Serologically confirmed cases (n = 41) were compared with two groups of asymptomatic seronegative controls. Risks identified included sighting of living rodents, exposure to rodent droppings, and trapping rodents during the 4 weeks preceding onset of symptoms. Activities during this 4-week period that presented the greatest risk were woodcutting, reopening of a nonaerated room, and strenuous physical effort. This is the first case-control study on risk factors for NE in Europe. In comparison with the American form of hantavirus pulmonary syndrome, which is spread by deer mice, professional activity appears to be a more important risk factor for acquisition of hantavirus in Europe.

  18. Microevolution of Puumala hantavirus during a complete population cycle of its host, the bank vole (Myodes glareolus.

    Directory of Open Access Journals (Sweden)

    Maria Razzauti

    Full Text Available Microevolution of Puumala hantavirus (PUUV was studied throughout a population cycle of its host, the bank vole (Myodes glareolus. We monitored PUUV variants circulating in the host population in Central Finland over a five-year period that included two peak-phases and two population declines. Of 1369 bank voles examined, 360 (26.3% were found infected with PUUV. Partial sequences of each of the three genome segments were recovered (approx. 12% of PUUV genome from 356 bank voles. Analyses of these sequences disclosed the following features of PUUV evolution: 1 nucleotide substitutions are mostly silent and deduced amino acid changes are mainly conservative, suggesting stabilizing selection at the protein level; 2 the three genome segments accumulate mutations at a different rate; 3 some of the circulating PUUV variants are frequently observed while others are transient; 4 frequently occurring PUUV variants are composed of the most abundant segment genotypes (copious and new transient variants are continually generated; 5 reassortment of PUUV genome segments occurs regularly and follows a specific pattern of segments association; 6 prevalence of reassortant variants oscillates with season and is higher in the autumn than in the spring; and 7 reassortants are transient, i.e., they are not competitively superior to their parental variants. Collectively, these observations support a quasi-neutral mode of PUUV microevolution with a steady generation of transient variants, including reassortants, and preservation of a few preferred genotypes.

  19. Prevalence of hepatitis C virus infection and its correlates in a rural area of southwestern China: a community-based cross-sectional study.

    Science.gov (United States)

    Cheng, Wanting; Yang, Ya; Zhou, Yibiao; Xiao, Penglei; Shi, Yan; Gao, Jianchuan; Chen, Yue; Liang, Song; Yihuo, Wuli; Song, Xiuxia; Jiang, Qingwu

    2017-08-11

    Hepatitis C virus (HCV) infection is a major public health problem in southwestern China. Our aim of the study was to assess the prevalence of HCV infection and its correlates in the Yi population of this region. A community-based survey was conducted to investigate sociodemographic characteristics and other associated factors for HCV infection in a rural area of southwestern China. Blood samples were collected and tested for antibodies to HCV. Anti-HCV positive samples were further assessed for HCV RNA. A total of 2558 participants aged ≥ 14 years were included in our analysis. Of them, 2.8% (95% CI 2.2% to 3.5%) were positive for HCV antibody. Multiple logistic regression analysis revealed that sex (male vs female: adjusted OR (aOR)=3.30, 95% CI 1.80 to 6.07), marital status (unmarried vs married: aOR=0.27, 95% CI 0.09 to 0.80), ever using injection drug (aOR=28.65, 95% CI 15.9 to 51.64) and ever having blood transfusion (aOR=7.64, 95% CI 1.94 to 30.16) were significantly associated with HCV infection (indicated by positive HCV antibody). Stratified analysis by HIV infection found that in HIV-negative individuals, sex (male vs female: aOR=3.84, 95% CI 1.88 to 7.85), ever using injection drug (aOR=22.15, 95% CI 8.45 to 58.04), having multiple sexual partners (aOR=2.57, 95% CI 1.26 to 5.23), and ever having blood transfusion (aOR=16.54, 95% CI 4.44 to 61.58) were significantly associated with HCV infection and in HIV-positive individuals, ever using injection drug (aOR=8.96, 95% CI 3.16 to 25.38) was associated with HCV infection. The data suggested a higher risk of HCV infection in this area when compared with the rest of China and some unique associated factors. Rapid scale-up of targeted interventions are needed to prevent further transmission and consequent morbidities. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

  20. [Epizootology of hemorrhagic fever with renal syndrome in the Central Chernozem Region].

    Science.gov (United States)

    Balakirev, A E; Bashkirtsev, V N; Sedova, N S; Okulova, N M; Trankvilevskiĭ, D V; Sikora, I V; Frolova, S M; Luz'ianov, E N; Shinkorenko, N N; Sapel'nikov, A F; Tkachenko, E A

    2006-01-01

    A total of 5149 small mammals belonging to 16 species were collected from the Lipetsk, Voronezh, and Belgorod regions (40 administrative districts) in 2003-2004 and examined by ELISA and IFA to detect hantavirus antigen and antibodies in the lung tissues. Hantavirus circulation was revealed in 13 species, the highest hantavirus activity being detected in field (Apodemus agrarius) and small wood (A. (S) uralensis) mice (Dobrava-Belgrad virus), bank (Clethrionomis glareolus) (Puumala virus) and common (Microtus arvalis) (Tula virus) voles. These species were frequently found to have their untypical hantaviruses, which was most commonly observed in small wood mice. It is suggested that the small wood mouse is likely to take a certain part in maintaining the circulation of Dobrava-Belgrad virus.

  1. Some lessons in artificial regeneration from southwestern Oregon.

    Science.gov (United States)

    William I. Stein

    1955-01-01

    Natural reproduction has often proved undependable for restocking cutovers and burns in the mixed-conifer forest types of southwestern Oregon. These types, covering 6,000 square miles of productive forest land in the five southwestern Oregon counties, are composed of many species--principally Douglas fir, Pseudotsuga menziesii (Mirb.) Franco;...

  2. Epidemiology of hepatitis B virus infection in first-time blood donors in the southwestern region of Goiás, central Brazil

    Directory of Open Access Journals (Sweden)

    Giulena Rosa Leite Cardoso dos Anjos

    2011-02-01

    Full Text Available INTRODUCTION: Little is known about the epidemiology of hepatitis B virus (HBV infection in populations from inner cities, especially in Central Brazil. Thus the objective of this study was to estimate the prevalence of HBV infection, and to analyze the factors associated with HBV infection, in a population of first-time blood donors in the southwestern region of Goiás, Central Brazil. METHODS: A total of 984 individuals were interviewed and gave blood samples to detect serological markers of HBV (HBsAg, anti-HBs, and anti-HBc by enzyme linked immunosorbent assays. RESULTS: An overall prevalence of 6.9% was found for HBV, with constituent prevalence rates of 3.6% and 11.6%, in subjects classified as fit and unfit to donate blood according the epidemiological screening, respectively. Only three individuals were positive for anti-HBs alone, suggesting previous vaccination against HBV. The variables of prior blood transfusion (OR = 2.3, tattoo/piercing (OR = 2.1, illicit drug use (OR = 2.3, sex with a partner with hepatitis (OR = 14.7, and history of sexually transmitted diseases (OR = 2.9 were independently associated with HBV-positivity. These data suggested a low endemicity of hepatitis B in the studied population. CONCLUSION: The findings of low hepatitis B immunization coverage and the association of hepatitis B with risky behavior highlight that there is a need to intensify hepatitis B prevention programs in the southwest region of Goiás.

  3. Seroprevalence survey of avian influenza A (H5) in wild migratory birds in Yunnan Province, Southwestern China.

    Science.gov (United States)

    Chang, Hua; Dai, Feiyan; Liu, Zili; Yuan, Feizhou; Zhao, Siyue; Xiang, Xun; Zou, Fengcai; Zeng, Bangquan; Fan, Yating; Duan, Gang

    2014-02-03

    Highly pathogenic avian influenza virus (HPAIV) is a highly contagious disease which is a zoonotic pathogen of significant economic and public health concern. The outbreaks caused by HPAIV H5N1 of Asian origin have caused animal and human disease and mortality in several countries of Southeast Asia, such as Bangladesh, Cambodia, China, India, Indonesia, Laos, Myanmar, Thailand and Viet Nam. For the first time since 1961, this HPAIV has also caused extensive mortality in wild birds and has sparked debate of the role wild birds have played in the spread of this virus. Other than confirmed mortality events, little is known of this virus in wild birds. There is no report on the seroprevalence of avian influenza H5 infection in wild migratory birds in Yunnan Province. In this study we examined live wild birds in Yunnan Province for H5 specific antibody to better understand the occurrence of this disease in free living birds. Sera from 440 wild birds were collected from in Kunming and Northern Ailaoshan of Yunnan Province, Southwestern China, and assayed for H5 antibodies using the hemagglutination inhibition (HI) assays. The investigation revealed that the seroprevalence of avian influenza H5 was as following: Ciconiiformes 2.6%, Strigiformes 13.04%, Passeriformes 20%, Cuculiformes 21.74%, Gruiformes 0%, Columbiformes 0%, Charadriiformes 0% and Coraciiformes 0%. Statistical analyses showed that there was a significant difference of prevalence between the orders (P avian influenza H5 antibodies were detected in 23 of 440 (5.23%) sera. Mean HI titer 23 positive sera against H5 were 5.4 log₂. The results of the present survey indicated that the proportion of wild birds had previously infected AIV H5 at other times of the year. To our knowledge, this is the first seroprevalence report of avian influenza H5 infection in wild migratory birds in China' s southwestern Yunnan Province. The results of the present survey have significant public health concerns.

  4. Casuses of deforestation in southwestern Madagascar

    DEFF Research Database (Denmark)

    Casse, Thorkil; Milhøj, Anders; Ranaivoson, Socrate

    2004-01-01

    Causes of deforestation are discussed in the case of southwestern Madagascar. Distinction is made between direct and indirect causes. The article ends up with an estimation of the value of agricultural land vs. an estimation of benefits from utilisation of non-timber forest products......Causes of deforestation are discussed in the case of southwestern Madagascar. Distinction is made between direct and indirect causes. The article ends up with an estimation of the value of agricultural land vs. an estimation of benefits from utilisation of non-timber forest products...

  5. 2014 annual site environmental report, Southwestern Power Administration

    Energy Technology Data Exchange (ETDEWEB)

    none,

    2014-12-31

    Southwestern Power Administration’s Annual Site Environmental Report (ASER) serves as the chief reporting mechanism for site environmental performance information within the Department of Energy and as a valuable resource for shared and collaborative environmental protection and performance information to Agency stakeholders and members of the public living near Southwestern Power Administration’s (Southwestern) facilities and transmission line rights-of-ways. This ASER meets the requirements of Department of Energy (DOE) Order 231.B. Southwestern’s key environmental involvement includes an emphasis on the protection of ecological resources which is effectively accomplished through environmental program elements such as protecting water resources, generation of clean hydropower energy, oil spill prevention practices, elimination of green-house gas emissions, and comprehensive project reviews to ensure the protection of living organisms, migratory birds, Federally threatened or endangered species, and historic or cultural resources. Southwestern continues to actively minimize effects to natural resources and strive for continual improvement in the area of environmental compliance and sustainability while achieving the agency mission to market and deliver Federal hydroelectric power.

  6. The energy behind the power. Southwestern Power Administration 1994 annual report

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-12-31

    This is the Southwestern Power Administration 1994 annual report. The topics of the report include a letter to the secretary; an overview including the mission statement, a description of the Southwestern Federal Power System, financial statement, performance measurements, national performance review; year in review, summary of results, financial and statistical data and the Southwestern Power Administration Organization.

  7. Whole Genome Analysis of Two Novel Type 2 Porcine Reproductive and Respiratory Syndrome Viruses with Complex Genome Recombination between Lineage 8, 3, and 1 Strains Identified in Southwestern China

    Directory of Open Access Journals (Sweden)

    Long Zhou

    2018-06-01

    Full Text Available Recombination among porcine reproductive and respiratory syndrome viruses (PRRSVs is thought to contribute to the emergence of new PRRSV variants. In this study, two newly emerged PRRSV strains, designated SCcd16 and SCya17, are isolated from lung tissues of piglets in Southwestern China. Genome comparative analysis reveals that SCcd16/SCya17 exhibit 93.1%/93.2%, 86.9%/87.0%, 85.3%/85.7%, and 83.6%/82.0% nucleotide similarity to PRRSVs JXA1, VR-2332, QYYZ and NADC30, respectively. They only exhibit 44.8%/45.1% sequence identity with LV (PRRSV-1, indicating that both emergent strains belong to the PRRSV-2 genotype. Genomic sequence alignment shows that SCcd16 and SCya17 have the same discontinuous 30-amino acid (aa deletion in Nsp2 of the highly pathogenic Chinese PRRSV strain JXA1, when compared to strain VR-2332. Notably, SCya17 shows a unique 5-nt deletion in its 3’-UTR. Phylogenetic analysis shows that both of the isolates are classified in the QYYZ-like lineage based on ORF5 genotyping, whereas they appear to constitute an inter-lineage between JXA1-like and QYYZ-like lineages based on their genomic sequences. Furthermore, recombination analyses reveal that the two newly emerged PRRSV isolates share the same novel recombination pattern. They have both likely originated from multiple recombination events between lineage 8 (JXA1-like, lineage 1 (NADC30-like, and lineage 3 (QYYZ-like strains that have circulated in China recently. The genomic data from SCcd16 and SCya17 indicate that there is on going evolution of PRRSV field strains through genetic recombination, leading to outbreaks in the pig populations in Southwestern China.

  8. Southwestern Avian Community Organization in Exotic Tamarix: Current Patterns and Future Needs

    Science.gov (United States)

    H. A. Walker

    2006-01-01

    Tamarisk (saltcedar: Tamarix), an invasive exotic tree native to the Eastern Hemisphere, is currently the dominant plant species in most southwestern riparian ecosystems at elevations below 1500 m. Tamarisk alters abiotic conditions and the floral composition of native southwestern riparian ecosystems and, in turn, affects native southwestern animal communities....

  9. Southwestern Power Administration Annual Report 2007

    Energy Technology Data Exchange (ETDEWEB)

    None

    2008-01-01

    “Renewable energy” isn’t just a catchphrase at Southwestern Power Administration (Southwestern). It describes the hydroelectric energy we market, and the energy that Southwestern’s employees bring to work every day, constantly challenging themselves to become more eff ective and effi cient in providing aff ordable, environmentally clean power to the American people. As Southwestern’s new Administrator, I have had the opportunity to view our operations from a fresh perspective, and I’m proud to share with you how a focus on continual improvement has been evident in accomplishments throughout the agency during fi scal year (FY) 2007. When the North American Electric Reliability Corporation (NERC) implemented new reliability standards, we met applicable implementation dates and exceeded NERC’s control performance standards throughout the year. When tasked with reducing the agency’s carbon footprint, we found ways to achieve an 8.7% reduction in energy intensity from last year without impacting our operational capabilities. And when faced with record-breaking infl ows into the reservoir projects from which we market power, we capitalized on the opportunity to provide customers with signifi cant quantities of supplemental energy. Our supplemental sales this year not only saved customers over $122 million, but increased Southwestern’s revenues -- a huge win-win for Southwestern’s ratepayers and the Nation’s taxpayers alike. Southwestern is proud of its role in protecting National and economic security by contributing to the diverse supply of domestically produced energy, operating and maintaining a safe and reliable transmission system, and ensuring good stewardship of our Nation’s water resources and environment. In FY 2007, Southwestern continued to repay all power costs to the American taxpayers by marketing and delivering approximately 5.6 billion kilowatthours of hydropower at cost-based rates to customers in our six-state region. This energy

  10. Musca domestica Salivary Gland Hypertrophy Virus, a Globally Distributed Insect Virus That Infects and Sterilizes Female Houseflies

    DEFF Research Database (Denmark)

    Prompiboon, Pannipa; Lietze, Verena-Ulrike; Denton, John S S

    2010-01-01

    The housefly, Musca domestica, is a cosmopolitan pest of livestock and poultry and is of economic, veterinary, and public health importance. Populations of M. domestica are naturally infected with M. domestica salivary gland hypertrophy virus (MdSGHV), a nonoccluded double-stranded DNA virus...... that inhibits egg production in infected females and is characterized by salivary gland hypertrophy (SGH) symptoms. MdSGHV has been detected in housefly samples from North America, Europe, Asia, the Caribbean, and the southwestern Pacific. In this study, houseflies were collected from various locations......, and the polymorphism detected was correlated with geographic source. The virulence of the geographic MdSGHV isolates was evaluated by per os treatment of newly emerged and 24-h-old houseflies with homogenates of infected salivary glands. In all cases, 24-h-old flies displayed a resistance to oral infection...

  11. Southwestern Power Administration Annual Report 2004-2006

    Energy Technology Data Exchange (ETDEWEB)

    None

    2006-01-01

    Confidence Commitment Cooperation These are words that spring to mind regarding Southwestern Power Administration’s performance during fiscal years (FY) 2004-2006 By offering innovative, customer-oriented service, working to improve system reliability and efficiency, and partnering with customers and other Federal power stakeholders, Southwestern has certainly exhibited all three of these qualities during these challenging yet productive years In fact, our cooperative working relationships were critical to our success during the severe and widespread drought conditions which prevailed throughout Southwestern’s marketing area for much of 2005-2006 When we proposed a temporary energy deferral program, our customers came on board by voluntarily taking less Federal hydropower than they were entitled to, enabling us to preserve system storage and fulfill our contract obligations during the crucial summer months of 2006 The U S Army Corps of Engineers (Corps) also helped improve our drought situation by allowing Southwestern more operational flexibility on a regional level Despite the challenges this critical drought period presented, Southwestern remained committed to fulfilling our mission and strategic goals From FY 2004 through FY 2006, we marketed and delivered all available Federal hydropower while meeting and even exceeding the reliability standards of the North American Electric Reliability Corporation (NERC) Our Power Operations Training Center in Springfield, Missouri, was cited as an “Example of Excellence” during a NERC readiness audit in October 2006; and as we have every year since NERC began measuring, Southwestern far exceeded the accepted NERC compliance ratings for power system operations reliability Our commitment to excellence and accountability has kept our repayment goals on target as well Revenues were sufficient to repay all annual expenses and the required principal investment in the Federal hydropower facilities Furthermore, the original

  12. Predicting Hotspots for Influenza Virus Reassortment

    Science.gov (United States)

    Gilbert, Marius; Martin, Vincent; Cappelle, Julien; Hosseini, Parviez; Njabo, Kevin Y.; Abdel Aziz, Soad; Xiao, Xiangming; Daszak, Peter; Smith, Thomas B.

    2013-01-01

    The 1957 and 1968 influenza pandemics, each of which killed ≈1 million persons, arose through reassortment events. Influenza virus in humans and domestic animals could reassort and cause another pandemic. To identify geographic areas where agricultural production systems are conducive to reassortment, we fitted multivariate regression models to surveillance data on influenza A virus subtype H5N1 among poultry in China and Egypt and subtype H3N2 among humans. We then applied the models across Asia and Egypt to predict where subtype H3N2 from humans and subtype H5N1 from birds overlap; this overlap serves as a proxy for co-infection and in vivo reassortment. For Asia, we refined the prioritization by identifying areas that also have high swine density. Potential geographic foci of reassortment include the northern plains of India, coastal and central provinces of China, the western Korean Peninsula and southwestern Japan in Asia, and the Nile Delta in Egypt. PMID:23628436

  13. Southwestern Power Administration Annual Report 2008

    Energy Technology Data Exchange (ETDEWEB)

    None

    2010-12-01

    Dear Secretary Chu, I am pleased to present the financial statements and operating data for Southwestern Power Administration (Southwestern) for Fiscal Year (FY) 2008. In FY 2008, Southwestern delivered over 7.3 billion kilowatt-hours of energy to its wholesale customers – nearly 31% more than average due to numerous record rainfall amounts in the southwest region. These record amounts produced revenues which exceeded the average annual revenue requirement by nearly $20 million and resulted in over $200 million in economic benefits to the region. Yet even as Southwestern exceeded its goals of marketing and delivering Federal hydroelectric power to our customers, we stayed focused on safety, security, and reliability. For example, we maintained our nearly 1,400 miles of high-voltage transmission lines, substations, and communications sites while achieving a Recordable Accident Frequency Rate of 0.0, a record that reflects Southwestern’s safety achievement of no recordable injuries for every 200,000 hours worked. We kept our rights-of-way secure from vegetation and other obstacles, work that not only supports our mission but also promotes reliability of the regional and National grid. We exceeded all North American Electric Reliability Corporation (NERC) Control Performance Standards (CPS- 1 and CPS-2), and maintained regulation and reserve obligations and reactive reserve margins to ensure the reliability of the bulk electric system, even during extended periods of restricted hydro operations due to unusually high project inflows. Finally, we continued our partnerships with the Department of Energy, the U.S. Army Corps of Engineers, our customers, and other Federal power stakeholders, partnerships that are vital to our continued success in marketing and delivering carbon-free, renewable, and domestically produced energy to our customers and to the Nation. Sincerely, Jon Worthington Administrator

  14. Population dynamics of caribou herds in southwestern Alaska

    Directory of Open Access Journals (Sweden)

    Patrick Valkenburg

    2003-04-01

    Full Text Available The five naturally occurring and one transplanted caribou (Rangifer tarandus granti herd in southwestern Alaska composed about 20% of Alaska's caribou population in 2001. All five of the naturally occurring herds fluctuated considerably in size between the late 1800s and 2001 and for some herds the data provide an indication of long-term periodic (40-50 year fluctuations. At the present time, the Unimak (UCH and Southern Alaska Peninsula (SAP are recovering from population declines, the Northern Alaska Peninsula Herd (NAP appears to be nearing the end of a protracted decline, and the Mulchatna Herd (MCH appears to now be declining after 20 years of rapid growth. The remaining naturally occurring herd (Kilbuck has virtually disappeared. Nutrition had a significant effect on the size of 4-month-old and 10-month-old calves in the NAP and the Nushagak Peninsula Herd (NPCH and probably also on population growth in at least 4 (SAP, NAP, NPCH, and MCH of the six caribou herds in southwestern Alaska. Predation does not appear to be sufficient to keep caribou herds in southwestern Alaska from expanding, probably because rabies is endemic in red foxes (Vulpes vulpes and is periodically transferred to wolves (Canis lupus and other canids. However, we found evidence that pneumonia and hoof rot may result in significant mortality of caribou in southwestern Alaska, whereas there is no evidence that disease is important in the dynamics of Interior herds. Cooperative conservation programs, such as the Kilbuck Caribou Management Plan, can be successful in restraining traditional harvest and promoting growth in caribou herds. In southwestern Alaska we also found evidence that small caribou herds can be swamped and assimilated by large herds, and fidelity to traditional calving areas can be lost.

  15. Transformational Leadership and Teacher Motivation in Southwestern Arizona High Schools

    Science.gov (United States)

    Reynolds, Catherine L.

    2009-01-01

    The purpose of this study was to explore the relationship between transformational leadership and teacher motivation in Southwestern Arizona high schools. Teachers in a school district in Southwestern Arizona comprised of high schools were surveyed using two instruments, Leithwood and Jantzi's (1998) The Leadership and Management of Schools in…

  16. Research on Structure Innovation of Agricultural Organization in China's Southwestern Mountainous Regions

    OpenAIRE

    Du, Qiang; Luo, Min; Wang, Ping

    2012-01-01

    Taking agricultural organization in China's southwestern mountainous regions as research object, on the basis of analysis of the status quo of agricultural organization development in China's southwestern mountainous regions, we use related theoretical knowledge on economics and organization science, we probe into the process of innovation and mechanism of action concerning the structure of agricultural organization in China's southwestern mountainous regions over the past 30 years. Finally w...

  17. Environmental Assessment for power marketing policy for Southwestern Power Administration

    Energy Technology Data Exchange (ETDEWEB)

    1993-12-01

    Southwestern Power Administration (Southwestern) needs to renew expiring power sales contracts with new term (10 year) sales contracts. The existing contracts have been in place for several years and many will expire over the next ten years. Southwestern completed an Environmental Assessment on the existing power allocation in June, 1979 (a copy of the EA is attached), and there are no proposed additions of any major new generation resources, service to discrete major new loads, or major changes in operating parameters, beyond those included in the existing power allocation. Impacts from a no action plan, proposed alternative, and market power for less than 10 years are described.

  18. Environmental Assessment for power marketing policy for Southwestern Power Administration

    International Nuclear Information System (INIS)

    1993-01-01

    Southwestern Power Administration (Southwestern) needs to renew expiring power sales contracts with new term (10 year) sales contracts. The existing contracts have been in place for several years and many will expire over the next ten years. Southwestern completed an Environmental Assessment on the existing power allocation in June, 1979 (a copy of the EA is attached), and there are no proposed additions of any major new generation resources, service to discrete major new loads, or major changes in operating parameters, beyond those included in the existing power allocation. Impacts from a no action plan, proposed alternative, and market power for less than 10 years are described

  19. AQUIFER IN AJAOKUTA, SOUTHWESTERN NIGERIA

    African Journals Online (AJOL)

    2005-03-08

    Mar 8, 2005 ... To establish the feasibility of water supply in a basement complex area ofAjaokuta, Southwestern Nigeria, pumping test results were used to investigate the storage properties and groundwater potential of the aquifer. The aquifer system consists of weathered and weathered/fractured zone of decomposed ...

  20. Southwestern Power Administration Combined Financial Statements, 2006-2009

    Energy Technology Data Exchange (ETDEWEB)

    None

    2009-09-01

    We have audited the accompanying combined balance sheets of the Southwestern Federal Power System (SWFPS), as of September 30, 2009, 2008, 2007, and 2006, and the related combined statements of revenues and expenses, changes in capitalization, and cash flows for the years then ended. As described in note 1(a), the combined financial statement presentation includes the hydroelectric generation functions of another Federal agency (hereinafter referred to as the generating agency), for which Southwestern Power Administration (Southwestern) markets and transmits power. These combined financial statements are the responsibility of the management of Southwestern and the generating agency. Our responsibility is to express an opinion on these combined financial statements based on our audits. We conducted our audits in accordance with auditing standards generally accepted in the United States of America. Those standards require that we plan and perform the audits to obtain reasonable assurance about whether the combined financial statements are free of material misstatement. An audit includes consideration of internal control over financial reporting as a basis for designing audit procedures that are appropriate in the circumstances, but not for the purpose of expressing an opinion on the effectiveness of Southwestern and the generating agency’s internal control over financial reporting. Accordingly, we express no such opinion. An audit also includes examining, on a test basis, evidence supporting the amounts and disclosures in the combined financial statements, assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall combined financial statement presentation. We believe that our audits provide a reasonable basis for our opinion. In our opinion, the combined financial statements referred to above present fairly, in all material respects, the respective financial position of the Southwestern Federal Power

  1. Southwestern Federal Power System 1995 Financial Statement audit under the Chief Financial Officers Act (WR-FC-96-02)

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-02-22

    The Southwestern Federal Power System encompasses the operation of 24 hydroelectric power plants by the U.S. Army Corps of Engineers and the marketing of power and energy from those plants by the Southwestern Power Administration of the U.S. Department of Energy. To integrate the operation of these hydroelectric generating plants and to transmit power from the dams to its customers, Southwestern Power Administration (Southwestern) maintains 2,220 kilometers (1,380 miles) of high-voltage transmission lines, 24 substations, and 46 microwave and VHF radio sites. Southwestern`s headquarters are in Tulsa, Oklahoma; its dispatch center is in Springfield, Missouri; and its maintenance crews are based in Jonesboro, Arkansas, in Gore and Tupelo, Oklahoma, and in Springfield, Missouri. Three offices - Power Marketing and Delivery, Maintenance, and Administration and Rates - are responsible for meeting Southwestern`s mission. Twelve of the 24 generating plants are scheduled directly by Southwestern, and a total of 19 contribute to the interconnected system operations. Generation at the five remaining projects (Denison, Narrows, Sam Rayburn, Whitney, and Willis) is used to serve specific customer loads. At the end of fiscal year 1995, Southwestern marketed power and energy to 10 generation and transmission cooperatives, one distribution cooperative, three military installations, 44 municipal utilities, and three municipal utility joint-action agencies. One of the joint-action agencies has its own allocation of power from Southwestern; the other two serve 33 municipal utilities to whom Southwestern has allocated power. The total number of power allocation customers is 92. Additionally, excess energy is occasionally sold to non-allocation utilities.

  2. Survey for hantaviruses, tick-borne encephalitis virus, and Rickettsia spp. in small rodents in Croatia.

    Science.gov (United States)

    Svoboda, Petra; Dobler, Gerhard; Markotić, Alemka; Kurolt, Ivan-Christian; Speck, Stephanie; Habuš, Josipa; Vucelja, Marko; Krajinović, Lidija Cvetko; Tadin, Ante; Margaletić, Josip; Essbauer, Sandra

    2014-07-01

    In Croatia, several rodent- and vector-borne agents are endemic and of medical importance. In this study, we investigated hantaviruses and, for the first time, tick-borne encephalitis virus (TBEV) and Rickettsia spp. in small wild rodents from two different sites (mountainous and lowland region) in Croatia. In total, 194 transudate and tissue samples from 170 rodents (A. flavicollis, n=115; A. agrarius, n=2; Myodes glareolus, n=53) were tested for antibodies by indirect immunofluorescence assays (IIFT) and for nucleic acids by conventional (hantaviruses) and real-time RT-/PCRs (TBEV and Rickettsia spp.). A total of 25.5% (24/94) of the rodents from the mountainous area revealed specific antibodies against hantaviruses. In all, 21.3% (20/94) of the samples from the mountainous area and 29.0% (9/31) from the lowland area yielded positive results for either Puumala virus (PUUV) or Dobrava-Belgrade virus (DOBV) using a conventional RT-PCR. All processed samples (n=194) were negative for TBEV by IIFT or real-time RT-PCR. Serological evidence of rickettsial infection was detected in 4.3% (4/94) rodents from the mountainous region. Another 3.2% (3/94) rodents were positive for Rickettsia spp. by real-time PCR. None of the rodents (n=76) from the lowland area were positive for Rickettsia spp. by real-time PCR. Dual infection of PUUV and Rickettsia spp. was found in one M. glareolus from the mountainous area by RT-PCR and real-time PCR, respectively. To our knowledge, this is the first detection of Rickettsia spp. in small rodents from Croatia. Phylogenetic analyses of S- and M-segment sequences obtained from the two study sites revealed well-supported subgroups in Croatian PUUV and DOBV. Although somewhat limited, our data showed occurrence and prevalence of PUUV, DOBV, and rickettsiae in Croatia. Further studies are warranted to confirm these data and to determine the Rickettsia species present in rodents in these areas.

  3. Feasibility study of wind-generated electricity for rural applications in southwestern Ohio

    Science.gov (United States)

    Kohring, G. W.

    The parameters associated with domestic production of wind generated electricity for direct use by small farms and rural homes in the southwestern Ohio region are discussed. The project involves direct utility interfaced electricity generation from a horizontal axis, down-wind, fixed pitch, wind powered induction generator system. Goals of the project are to determine: the ability to produce useful amounts of domestic wind generated electricity in the southwestern Ohio region; economic justification for domestic wind generated electrical production; and the potential of domestic wind generated electricity for reducing dependence on non-renewable energy resources in the southwestern Ohio region.

  4. Radiological Findings and their Clinical Correlations in Nephropathia Epidemica

    Energy Technology Data Exchange (ETDEWEB)

    Paakkala, A.; Mustonen, J. [Medical School, Univ. of Tampere, and Dept. of Radiology and Internal Medicine, Tampere Univ. Hospital, Tampere (Finland)

    2007-04-15

    Nephropathia epidemica (NE) is a mild form of hemorrhagic fever with renal syndrome (HFRS). Its course varies from asymptomatic to fatal. The etiologic agent, Puumala virus, belongs to the Hantavirus genus of the Bunyaviridae family. Respiratory symptoms, from common cold to respiratory distress, occur in NE. Acute renal failure (ARF) is evident in over 90% of hospital-treated NE patients. In this review article, special attention is paid to radiological lung and renal involvement to investigate the occurrence and type of manifestations during the acute phase of infection and recovery.

  5. Radiological Findings and their Clinical Correlations in Nephropathia Epidemica

    International Nuclear Information System (INIS)

    Paakkala, A.; Mustonen, J.

    2007-01-01

    Nephropathia epidemica (NE) is a mild form of hemorrhagic fever with renal syndrome (HFRS). Its course varies from asymptomatic to fatal. The etiologic agent, Puumala virus, belongs to the Hantavirus genus of the Bunyaviridae family. Respiratory symptoms, from common cold to respiratory distress, occur in NE. Acute renal failure (ARF) is evident in over 90% of hospital-treated NE patients. In this review article, special attention is paid to radiological lung and renal involvement to investigate the occurrence and type of manifestations during the acute phase of infection and recovery

  6. SHOCK-CLOUD INTERACTION AND PARTICLE ACCELERATION IN THE SOUTHWESTERN LIMB OF SN 1006

    Energy Technology Data Exchange (ETDEWEB)

    Miceli, M.; Orlando, S.; Bocchino, F. [INAF-Osservatorio Astronomico di Palermo, Piazza del Parlamento 1, I-90134 Palermo (Italy); Acero, F. [ORAU/NASA Goddard Space Flight Center, Astrophysics Science Division, Code 661, Greenbelt, MD 20771 (United States); Dubner, G. [Instituto de Astronomía y Física del Espacio (IAFE), UBA-CONICET, CC 67, Suc. 28, 1428 Buenos Aires (Argentina); Decourchelle, A., E-mail: miceli@astropa.unipa.it [Laboratoire AIM-Paris-Saclay, CEA/DSM/Irfu-CNRS-Université Paris Diderot, CE-Saclay, F-91191 Gif-sur-Yvette (France)

    2014-02-20

    The supernova remnant SN 1006 is a powerful source of high-energy particles and evolves in a relatively tenuous and uniform environment despite interacting with an atomic cloud in its northwestern limb. The X-ray image of SN 1006 reveals an indentation in the southwestern part of the shock front and the H I maps show an isolated (southwestern) cloud, having the same velocity as the northwestern cloud, whose morphology fits perfectly in the indentation. We performed spatially resolved spectral analysis of a set of small regions in the southwestern nonthermal limb and studied the deep X-ray spectra obtained within the XMM-Newton SN 1006 Large Program. We also analyzed archive H I data, obtained by combining single-dish and interferometric observations. We found that the best-fit value of N {sub H} derived from the X-ray spectra significantly increases in regions corresponding to the southwestern cloud, while the cutoff energy of the synchrotron emission decreases. The N {sub H} variation corresponds perfectly with the H I column density of the southwestern cloud, as measured from the radio data. The decrease in the cutoff energy at the indentation clearly reveals that the back side of the cloud is actually interacting with the remnant. The southwestern limb therefore presents a unique combination of efficient particle acceleration and high ambient density, thus being the most promising region for γ-ray hadronic emission in SN 1006. We estimate that such emission will be detectable with the Fermi telescope within a few years.

  7. SHOCK-CLOUD INTERACTION AND PARTICLE ACCELERATION IN THE SOUTHWESTERN LIMB OF SN 1006

    International Nuclear Information System (INIS)

    Miceli, M.; Orlando, S.; Bocchino, F.; Acero, F.; Dubner, G.; Decourchelle, A.

    2014-01-01

    The supernova remnant SN 1006 is a powerful source of high-energy particles and evolves in a relatively tenuous and uniform environment despite interacting with an atomic cloud in its northwestern limb. The X-ray image of SN 1006 reveals an indentation in the southwestern part of the shock front and the H I maps show an isolated (southwestern) cloud, having the same velocity as the northwestern cloud, whose morphology fits perfectly in the indentation. We performed spatially resolved spectral analysis of a set of small regions in the southwestern nonthermal limb and studied the deep X-ray spectra obtained within the XMM-Newton SN 1006 Large Program. We also analyzed archive H I data, obtained by combining single-dish and interferometric observations. We found that the best-fit value of N H derived from the X-ray spectra significantly increases in regions corresponding to the southwestern cloud, while the cutoff energy of the synchrotron emission decreases. The N H variation corresponds perfectly with the H I column density of the southwestern cloud, as measured from the radio data. The decrease in the cutoff energy at the indentation clearly reveals that the back side of the cloud is actually interacting with the remnant. The southwestern limb therefore presents a unique combination of efficient particle acceleration and high ambient density, thus being the most promising region for γ-ray hadronic emission in SN 1006. We estimate that such emission will be detectable with the Fermi telescope within a few years

  8. Genetic variation in the endangered Southwestern Willow Flycatcher

    Science.gov (United States)

    Busch, Joseph; Miller, Mark P.; Paxton, E.H.; Sogge, M.K.; Keim, Paul

    2000-01-01

    The Southwestern Willow Flycatcher (Empidonax traillii extimus) is an endangered Neotropical migrant that breeds in isolated remnants of dense riparian habitat in the southwestern United States. We estimated genetic variation at 20 breeding sites of the Southwestern Willow Flycatcher (290 individuals) using 38 amplified fragment length polymorphisms (AFLPs). Our results suggest that considerable genetic diversity exists within the subspecies and within local breeding sites. Statistical analyses of genetic variation revealed only slight, although significant, differentiation among breeding sites (Mantel's r = 0.0705, P UPGMA cluster analysis of the AFLP markers indicates that extensive gene flow has occurred among breeding sites. No one site stood out as being genetically unique or isolated. Therefore, the small level of genetic structure that we detected may not be biologically significant. Ongoing field studies are consistent with this conclusion. Of the banded birds that were resighted or recaptured in Arizona during the 1996 to 1998 breeding seasons, one-third moved between breeding sites and two-thirds were philopatric. Low differentiation may be the result of historically high rangewide diversity followed by recent geographic isolation of breeding sites, although observational data indicate that gene flow is a current phenomenon. Our data suggest that breeding groups of E. t. extimus act as a metapopulation.

  9. [Microbiological surveillance: viral hemorrhagic fever in Central African Republic: current serological data in man].

    Science.gov (United States)

    Nakounné, E; Selekon, B; Morvan, J

    2000-01-01

    An investigation was conducted between 1994 and 1997 in forested areas of the Central African Republic (CAR) to determine the seroprevalence of IgG antibodies against several haemorrhagic fever viruses present in the region. Sera were obtained from 1762 individuals in two groups (Pygmy and Bantu locuted populations) living in 4 forested areas in the south of the country. Sera were tested for IgG antibodies against Ebola, Marburg, Rift Valley fever (RVF), Yellow fever (YF) and Hantaviruses by enzyme immunoassay (EIA), and against Lassa virus by immunofluorescent assay. The prevalence of IgG antibodies was 5.9% for Ebola, 2% for Marburg, 6.9% pour RVF, 6.5% for YF, 2% for Hantaan. No antibodies were detected against Lassa, Seoul, Puumala and Thottapalayam viruses. No IgM antibodies were detected against RVF and YF viruses. The distribution of antibodies appears to be related to tropical rain forest areas. This study indicates that several haemorrhagic fever viruses are endemic in forested areas of the CAR and could emerge due to environmental modification.

  10. Water-level trends and potentiometric surfaces in the Nacatoch Aquifer in northeastern and southwestern Arkansas and in the Tokio Aquifer in southwestern Arkansas, 2014–15

    Science.gov (United States)

    Rodgers, Kirk D.

    2017-09-20

    The Nacatoch Sand in northeastern and southwestern Arkansas and the Tokio Formation in southwestern Arkansas are sources of groundwater for agricultural, domestic, industrial, and public use. Water-level altitudes measured in 51 wells completed in the Nacatoch Sand and 42 wells completed in the Tokio Formation during 2014 and 2015 were used to create potentiometric-surface maps of the two areas. Aquifers in the Nacatoch Sand and Tokio Formation are hereafter referred to as the Nacatoch aquifer and the Tokio aquifer, respectively.Potentiometric surfaces show that groundwater in the Nacatoch aquifer flows southeast toward the Mississippi River in northeastern Arkansas. Groundwater flow direction is towards the south and southeast in Hempstead, Little River, and Nevada Counties in southwestern Arkansas. An apparent cone of depression exists in southern Clark County and likely alters groundwater flow from a regional direction toward the depression.In southwestern Arkansas, potentiometric surfaces indicate that groundwater flow in the Tokio aquifer is towards the city of Hope. Northwest of Hope, an apparent cone of depression exists. In southwestern Pike, northwestern Nevada, and northeastern Hempstead Counties, an area of artesian flow (water levels are at or above land surface) exists.Water-level changes in wells were identified using two methods: (1) linear regression analysis of hydrographs from select wells with a minimum of 20 years of water-level data, and (2) a direct comparison between water-level measurements from 2008 and 2014–15 at each well. Of the six hydrographs analyzed in the Nacatoch aquifer, four indicated a decline in water levels. Compared to 2008 measurements, the largest rise in water levels was 35.14 feet (ft) in a well in Clark County, whereas the largest decline was 14.76 ft in a well in Nevada County, both located in southwestern Arkansas.Of the four hydrographs analyzed in the Tokio aquifer, one indicated a decline in water levels, while

  11. Contrasting evidence of Holocene ice margin retreat, south-western Greenland

    DEFF Research Database (Denmark)

    Levy, L. B.; Larsen, N. K.; Davidson, T. A.

    2017-01-01

    Constraining the Greenland Ice Sheet's (GrIS) response to Holocene climate change provides calibrations for ice sheet models that hindcast past ice margin fluctuations. Ice sheet models predict enhanced ice retreat in south-western Greenland during the middle Holocene; however, few geological...... observations corroborating the extensive retreat are available. We present new data from lake sediment cores from the Isua region, south-western Greenland, which provide constraints on Holocene fluctuations of the GrIS margins. Our data indicate that the main GrIS margin was 30 km west of its present...

  12. Seven Global Goals. 2013 annual report, Southwestern Power Administration

    Energy Technology Data Exchange (ETDEWEB)

    none,

    2014-09-01

    For over 70 years, Southwestern has marketed and delivered reliable, renewable, and affordable hydropower, partnering with Federal power stakeholders and others in the industry to make sure the lights stay on. This kind of effective, efficient, and cost conscious operation is made possible only by hard work and dedication. Southwestern employees work individually and as a team to meet seven comprehensive agency goals that touch on all aspects of the agency’s operations. Dubbed the “Seven Global Goals” by Administrator Chris Turner, these objectives identify specific, measurable targets that support Southwestern’s mission and reinforce its responsibilities toward its customers and the Nation.

  13. Factors influencing woodlands of southwestern North Dakota

    Science.gov (United States)

    Michele M. Girard; Harold Goetz; Ardell J. Bjugstad

    1987-01-01

    Literature pertaining to woodlands of southwestern North Dakota is reviewed. Woodland species composition and distribution, and factors influencing woodland ecosystems such as climate, logging, fire, and grazing are described. Potential management and improvement techniques using vegetation and livestock manipulation have been suggested.

  14. Forest responses to increasing aridity and warmth in the southwestern United States

    Science.gov (United States)

    Williams, A.P.; Allen, Craig D.; Millar, C.I.; Swetnam, T.W.; Michaelsen, J.; Still, C.J.; Leavitt, Steven W.

    2010-01-01

    In recent decades, intense droughts, insect outbreaks, and wildfires have led to decreasing tree growth and increasing mortality in many temperate forests. We compared annual tree-ring width data from 1,097 populations in the coterminous United States to climate data and evaluated site-specific tree responses to climate variations throughout the 20th century. For each population, we developed a climate-driven growth equation by using climate records to predict annual ring widths. Forests within the southwestern United States appear particularly sensitive to drought and warmth. We input 21st century climate projections to the equations to predict growth responses. Our results suggest that if temperature and aridity rise as they are projected to, southwestern trees will experience substantially reduced growth during this century. As tree growth declines, mortality rates may increase at many sites. Increases in wildfires and bark-beetle outbreaks in the most recent decade are likely related to extreme drought and high temperatures during this period. Using satellite imagery and aerial survey data, we conservatively calculate that ≈2.7% of southwestern forest and woodland area experienced substantial mortality due to wildfires from 1984 to 2006, and ≈7.6% experienced mortality associated with bark beetles from 1997 to 2008. We estimate that up to ≈18% of southwestern forest area (excluding woodlands) experienced mortality due to bark beetles or wildfire during this period. Expected climatic changes will alter future forest productivity, disturbance regimes, and species ranges throughout the Southwest. Emerging knowledge of these impending transitions informs efforts to adaptively manage southwestern forests.

  15. Characteristics of Intracrater Thermal Anomalies in Southwestern Margaritifer Terra

    Science.gov (United States)

    McDowell, M. L.; Hamilton, V. E.

    2005-03-01

    We use thermophysical properties, albedo, short wavelength emissivity, composition, and geomorphology to understand the formation of anomalously warm intracrater deposits in southwestern Margaritifer Terra.

  16. Research on Structure Innovation of Agricultural Organization in China’s Southwestern Mountainous Regions

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    Taking agricultural organization in China’s southwestern mountainous regions as research object,on the basis of analysis of the status quo of agricultural organization development in China’s southwestern mountainous regions,we use related theoretical knowledge on economics and organization science,we probe into the process of innovation and mechanism of action concerning the structure of agricultural organization in China’s southwestern mountainous regions over the past 30 years.Finally we draw several general conclusions regarding structure innovation of agricultural organization in China’s southwestern mountainous regions as follows:first,the structure innovation of agricultural organization,a gradual process,proceeds ceaselessly along with ongoing progress and development of agriculture,and in this process,farmers always play a fundamental role;second,the structure innovation of agricultural organization is affected by many factors,and government institutional arrangement and change in market conditions is undoubtedly the most critical factor;third,the probable evolving direction of structure innovation of agricultural organization includes internal differentiation of the same form of agricultural organization,association of different forms of agricultural organization,and emergence of other forms of agricultural organization.

  17. Winter Counter-Wind Transport in the Inner Southwestern Yellow Sea

    Science.gov (United States)

    Wu, Hui; Gu, Jinghua; Zhu, Ping

    2018-01-01

    Coastal currents generally flow downshelf with land on the right side (Northern Hemisphere) under the geostrophic balance, and are often strengthened by downwelling-favorable winds. However, the recent mooring observation in the inner southwestern Yellow Sea showed that coastal transport direction can be substantially changed by tidal forcing. In the survey, the tidal-averaged transports at two out of three sites remained northward (i.e., in the upshelf direction) and opposite the downwelling-favorable northerly wind, except during a brief neap tide period. Numerical experiments showed that the incoming Poincaré wave tide from the East China Sea plays a key role in forming this counter-wind transport system. This tidal wave produces a shoreward tidal stress south of 33.5°N in the inner southwestern Yellow Sea, driving an upshelf transport under the Earth's rotation. Counterpropagating tidal waves from the East China Sea and the northern Yellow Sea collide in coastal water in 32.5-34°N, which produce a standing tidal wave and therefore a mean sea-surface setup with alongshore and cross-shelf scales of both >100 km. This sea-surface setup causes an alongshore sea surface gradient, which veers the upshelf transport to the offshore direction under geostrophic balance. The strong tidal current increases the tidal-mean bottom resistance in the SCW, thus reduces the wind-driven current to a magnitude smaller than the tide-induced residual transport velocity. Therefore, upshelf transport persists in the inner southwestern Yellow Sea, and the Changjiang River Estuary becomes a major source area for the inner southwestern Yellow Sea.

  18. 78 FR 65703 - Notice of Availability of the Idaho and Southwestern Montana Greater Sage-Grouse Draft Land Use...

    Science.gov (United States)

    2013-11-01

    ...] Notice of Availability of the Idaho and Southwestern Montana Greater Sage-Grouse Draft Land Use Plan... Environmental Impact Statement (EIS) for managing Greater Sage- Grouse (GRSG) in the Idaho and Southwestern... Southwestern Montana Greater Sage-Grouse Draft LUP Amendments/Draft EIS by any of the following methods: Email...

  19. Upland hardwood habitat types in southwestern North Dakota

    Science.gov (United States)

    Michele M. Girard; Harold Goetz; Ardell J. Bjugstad

    1985-01-01

    The Daubenmire habitat type method was used to classify the upland hardwood draws of southwestern North Dakota. Preliminary data analysis indicates there are four upland habitat types: Fraxinus pennsylvanica/Prunus virginiana; F. pnnseanica-Ulmus americana/P. virginiana; Populus...

  20. Oral susceptibility of Singapore Aedes (Stegomyia aegypti (Linnaeus to Zika virus.

    Directory of Open Access Journals (Sweden)

    MeiZhi Irene Li

    Full Text Available Zika virus (ZIKV is a little known flavivirus that caused a major outbreak in 2007, in the South-western Pacific Island of Yap. It causes dengue-like syndromes but with milder symptoms. In Africa, where it was first isolated, ZIKV is mainly transmitted by sylvatic Aedes mosquitoes. The virus has also been isolated from Ae. aegypti and it is considered to be the vector involved in the urban transmission of the virus. Transmission of the virus by an African strain of Ae. aegypti has also been demonstrated under laboratory conditions. The aim of the present study is to describe the oral susceptibility of a Singapore strain of Ae. aegypti to ZIKV, under conditions that simulate local climate.To assess the receptivity of Singapore's Ae. aegypti to the virus, we orally exposed a local mosquito strain to a Ugandan strain of ZIKV. Upon exposure, fully engorged mosquitoes were maintained in an environmental chamber set at 29 °C and 70-75% RH. Eight mosquitoes were then sampled daily from day 1 to day 7, and subsequently on days 10 and 14 post exposure (pe. The virus titer of the midgut and salivary glands of each mosquito were determined using a tissue culture infectious dose(50 (TCID(50 assay. High midgut infection and salivary gland dissemination rates were observed. By day 5 after the infectious blood meal, ZIKV was found in the salivary glands of more than half of the mosquitoes tested (62%; and by day 10, all mosquitoes were potentially infective.This study showed that Singapore's urban Ae. aegypti are susceptible and are potentially capable of transmitting ZIKV. The virus could be established in Singapore should it be introduced. Nevertheless, Singapore's current dengue control strategy is applicable to control ZIKV.

  1. A habitat overlap analysis derived from Maxent for Tamarisk and the South-western Willow Flycatcher

    Science.gov (United States)

    Patricia York; Paul Evangelista; Sunil Kumar; James Graham; Curtis Flather; Thomas Stohlgren

    2011-01-01

    Biologic control of the introduced and invasive, woody plant tamarisk (Tamarix spp, saltcedar) in south-western states is controversial because it affects habitat of the federally endangered South-western Willow Flycatcher (Empidonax traillii extimus). These songbirds sometimes nest in tamarisk where floodplain-level invasion replaces native habitats. Biologic control...

  2. Greetings and Politeness in Doctor-Client Encounters in Southwestern

    Directory of Open Access Journals (Sweden)

    Akin Odebunmi

    2013-05-01

    Full Text Available Doctors and clients sometimes experience interactiveclashes during hospital meetings in South-western Nigerianhospitals because of their divergent culture-constrainedorientation to politeness cues. The goal of this paper is tounpack the discursive elements that characterize interactiveconfluence and divergence in selected consultativeencounters in the hospitals. The findings indicate thatinstitutional and cultural (disalignments occur in respect ofadjacency and non-adjacency pair greetings. In bothgreeting types, face support, threat and stasis are conjointlyco-constituted by doctors and Yoruba clients within theaffordances of the cultural, institutional and situationalcontext of the Southwestern Nigerian hospital setting.Adjacency pair greetings attract mutual interpretingsbetween the parties; interactive disalignments aredifferentially pragmatically accommodated by doctors andclients. In non-adjacency pair greeting, doctors’ threats areco-constituted as appropriate by both parties, theinstitutional power of doctor and shared Western culturalorientation playing significant roles.

  3. On long-term evolution of seasonal precipitation in southwestern Europe

    Directory of Open Access Journals (Sweden)

    F. Valero

    1996-09-01

    Full Text Available Annual cycles in long time series of precipitation from sixteen southwest European observatories have been analysed using complex demodulation. The stations have been clustered into two distinct regions and a hybrid one. They are referred to as the southwestern Europe precipitation Atlantic regime (SEPAR and the southwestern Europe precipitation Mediterranean regime (SEPMER, with the hybrid regime referred to in terms of the mean amplitude ratios between semiannual and annual rainfall components. Some evidence of linking between seasonal cycle harmonic amplitudes and the zonal circulation has been found for SEPAR stations and a more obscured relationship for the SEPMER region. Within the SEPAR region the strength of the relationship is diminished towards the north. A trend analysis of the amplitudes against time since 1920 has also been carried out and the results reveal a divergent pattern in trends between annual and semiannual component amplitudes for the SEPAR region. In fact, both an increasing annual-amplitude trend and a decreasing semiannual-amplitude trend are observed, in each case statistically significant. The fact that the seasonal cycle variability of rainfall in southwestern Europe becomes more sensitive southwards to changes in atmospheric zonal circulation over the North Atlantic might, in our opinion, be related to the swing of the circumpolar vortex.

  4. Morphological pattern of endometrial biopsies in southwestern Nigeria

    African Journals Online (AJOL)

    Background: Endometrium remains the most sensitive indicator of ovarian function and endometrial biopsy is one of the diagnostic procedures in endometrial pathology. The current study was carried out to examine the morphological pattern of endometrial biopsies in Ibadan, South-western Nigeria and compare the results ...

  5. Southwestern Institute of Physics annual report (2000)

    International Nuclear Information System (INIS)

    2001-01-01

    The research results and engineering progress of SWIP (Southwestern Institute of Physics) during the year of 2000 was summarized in this annual report. The contents divided into five parts: 1. tokamak experimental diagnoses and tokamak engineering; 2. fusion reactor and fusion reactor materials; 3. plasma theory and calculation; 4. technique development and application; 5. appendix 31 theses and presented in this report

  6. Fire and birds in the southwestern United States

    Science.gov (United States)

    Carl E. Bock; William M. Block

    2005-01-01

    Fire is an important ecological force in many southwestern ecosystems, but frequencies, sizes, and intensities of fire have been altered historically by grazing, logging, exotic vegetation, and suppression. Prescribed burning should be applied widely, but under experimental conditions that facilitate studying its impacts on birds and other components of biodiversity....

  7. Strategic nutrient management of field pea in southwestern Uganda ...

    African Journals Online (AJOL)

    Strategic nutrient management of field pea in southwestern Uganda. ... African Journal of Food, Agriculture, Nutrition and Development ... Strategic nutrient management requires that the most limiting nutrient is known in order to provide a foundation for designing effective and sustainable soil fertility management ...

  8. Implementing northern goshawk habitat management in Southwestern forests: a template for restoring fire-adapted forest ecosystems.

    Science.gov (United States)

    James A. Youtz; Russell T. Graham; Richard T. Reynolds; Jerry. Simon

    2008-01-01

    Developing and displaying forest structural targets are crucial for sustaining the habitats of the northern goshawk, a sensitive species in Southwestern forests. These structural targets were described in Management Recommendations for the Northern Goshawk in the Southwestern United States (MRNG) (Reynolds, et al., 1992). The MRNG were developed in a unique food-web...

  9. Clinical importance of pharmacogenetics in the treatment of hepatitis C virus infection.

    Science.gov (United States)

    Kamal, Adina Maria; MitruŢ, Paul; Kamal, Kamal Constantin; Tica, Oana Sorina; Niculescu, Mihaela; Alexandru, Dragoş Ovidiu; Tica, Andrei Adrian

    2016-01-01

    Globally, over 4% of the world population is affected by hepatitis C virus (HCV) infection. The current standard of care for hepatitis C infection is combination therapy with pegylated interferon and ribavirin for 48 weeks, which yield a sustained virological response in only a little over half of the patients with genotype 1 HCV. We investigated the clinical importance of pharmacogenetics in treatment efficacy and prediction of hematotoxicity. A total of 148 patients infected with HCV were enrolled. All patients were treated for a period of 48 weeks or less with pegylated interferon and ribavirin. Four genotypes were investigated: inosine triphosphatase (ITPA) rs1127354, C20orf194 rs6051702, interferon lambda (IFNL)3 rs8099917, IFNL3÷4 rs12979860 in the population from southwestern Romania. Genetic variants for rs129798660 and rs6051702 proved once more to represent an indisputable clinical tool for predicting sustained virological response (SVR) (69.23%, chi-square p=0.007846, ppharmacogenetics should play a constant role in treatment decisions for patients infected with hepatitis C virus.

  10. Southwestern Institute of Physics annual report 2001

    International Nuclear Information System (INIS)

    2002-01-01

    In the year 2001, significant progresses in the engineering construction of the HL-2A tokamak were made at the Southwestern Institute of Physics (SWIP). At the same time, the research projects from Nuclear Energy Development Foundation, the National Defense Basic Research Foundation and the National Science Foundation of China were completely fulfilled. In addition 283 papers and reports were contributed, among them, 67 are included in the Annual Report

  11. Cancer distribution pattern in south-western Nigeria | Awodele ...

    African Journals Online (AJOL)

    The burden of cancer in Nigeria is appreciable with about 100,000 new cancer cases been reported in the country each year. This study aimed to determine the level of occurrence and pattern of distribution of different cancer types in two major functional cancer registries in south-western Nigeria. A desk review of the level ...

  12. A review of maternal mortality at Jimma Hospital, Southwestern ...

    African Journals Online (AJOL)

    A retrospective review of hospital maternal deaths at Jimma Hospital, Southwestern Ethiopia, covering the period from September 1990 to May 1999 was conducted with the objectives of determining the overall maternal mortality rate, observing trend of maternal mortality during the period, and identifying major causes of ...

  13. Phylogeny of Dengue and Chikungunya viruses in Al Hudayda governorate, Yemen.

    Science.gov (United States)

    Ciccozzi, Massimo; Lo Presti, Alessandra; Cella, Eleonora; Giovanetti, Marta; Lai, Alessia; El-Sawaf, Gamal; Faggioni, Giovanni; Vescio, Fenicia; Al Ameri, Ranya; De Santis, Riccardo; Helaly, Ghada; Pomponi, Alice; Metwally, Dalia; Fantini, Massimo; Qadi, Hussein; Zehender, Gianguglielmo; Lista, Florigio; Rezza, Giovanni

    2014-10-01

    Yemen, which is located in the southwestern end of the Arabian Peninsula, is one of countries most affected by recurrent epidemics caused by emerging vector-borne viruses. Dengue virus (DENV) outbreaks have been reported with increasing frequency in several governorates since the year 2000, and the Chikungunya virus (CHIKV) has been also responsible of large outbreaks and it is now a major public health problem in Yemen. We report the results of the phylogenetic analysis of DENV-2 and CHIKV isolates (NS1 and E1 genes, respectively) detected in an outbreak occurred in Al-Hudayda in 2012. Estimates of the introduction date of CHIKV and DENV-2, and the phylogeographic analysis of DENV-2 are also presented. Phylogenetic analysis showed that the Yemen isolates of DENV belonged to the lineage 2 Cosmopolitan subtype, whereas CHIKV isolates from Yemen belonged to the ECSA genotype. All the CHIKV isolates from Yemen were statistically supported and dated back to the year 2010 (95% HPD: 2009-2011); these sequences showed an alanine in the aminoacid position 226 of the E1 protein. Phylogeographic analysis of DENV-2 virus showed that cluster 1, which included Yemen isolates, dated back to 2003 Burkina Faso strains (95% HPD 1999-2007). The Yemen, cluster dated back to 2011 (95% HPD 2009-2012). Our study sheds light on the global spatiotemporal dynamics of DENV-2 and CHIKV in Yemen. This study reinforces both the need to monitor the spread of CHIKV and DENV, and to apply significant measures for vector control. Copyright © 2014 Elsevier B.V. All rights reserved.

  14. Simulating the productivity of desert woody shrubs in southwestern Texas

    Science.gov (United States)

    In the southwestern U.S., many rangelands have converted from native grasslands to woody shrublands dominated by creosotebush (Larrea tridentate) and honey mesquite (Prosopis glandulosa), threatening ecosystem health. Both creosotebush and mesquite have well-developed long root systems that allow t...

  15. Carbon and nitrogen cycling in southwestern ponderosa fine forests

    Science.gov (United States)

    Stephen C. Hart; Paul C. Selmants; Sarah I. Boyle; Steven T. Overby

    2007-01-01

    Ponderosa pine forests of the southwestern United States were historically characterized by relatively open, parklike stands with a bunchgrass-dominated understory. This forest structure was maintained by frequent, low-intensity surface fires. Heavy livestock grazing, fire suppression, and favorable weather conditions following Euro-American settlement in the late 19th...

  16. Simultaneous detection of IgG antibodies associated with viral hemorrhagic fever by a multiplexed Luminex-based immunoassay.

    Science.gov (United States)

    Wu, Wei; Zhang, Shuo; Qu, Jing; Zhang, Quanfu; Li, Chuan; Li, Jiandong; Jin, Cong; Liang, Mifang; Li, Dexin

    2014-07-17

    Viral hemorrhagic fevers (VHFs) are worldwide diseases caused by several kinds of viruses. With the emergence of new viruses, advanced diagnostic methods are urgently needed for identification of VHFs. Based on Luminex xMAP technology, a rapid, sensitive, multi-pathogen and high-throughput method which could simultaneously detect hemorrhagic fever viruses (HFVs) specific IgG antibodies was developed. Recombinant antigens of nine HFVs including Hantaan virus (HTNV), Seoul virus (SEOV), Puumala virus (PUUV), Andes virus (ANDV), Sin Nombre virus (SNV), Crimean-Congo hemorrhagic fever virus (CCHFV), Rift Valley fever virus (RVFV), Severe fever with thrombocytopenia syndrome bunyavirus (SFTSV) and dengue virus (DENV) were produced and purified from a prokaryotic expression system and the influence of the coupling amount was investigated. Cross-reactions among antigens and their rabbit immune sera were evaluated. Serum samples collected from 51 laboratory confirmed hemorrhagic fever with renal syndrome (HFRS) patients, 43 confirmed SFTS patients and 88 healthy donors were analyzed. Results showed that recombinant nucleocapsid protein of the five viruses belonging to the genus Hantavirus, had serological cross-reactivity with their corresponding rabbit immune sera, but not apparent with immune sera of other four viruses. Evaluation of this new method with clinical serum samples showed 98.04% diagnostic sensitivity for HFRS, 90.70% for SFTS detection and the specificity was ranging from 66.67% to 100.00%. The multiplexed Luminex-based immunoassay has firstly been established in our study, which provides a potentially reliable diagnostic tool for IgG antibody detection of VHFs. Copyright © 2014 Elsevier B.V. All rights reserved.

  17. Quantifying the Eocene to Pleistocene topographic evolution of the southwestern Alps, France and Italy

    Science.gov (United States)

    Fauquette, Séverine; Bernet, Matthias; Suc, Jean-Pierre; Grosjean, Anne-Sabine; Guillot, Stéphane; van der Beek, Peter; Jourdan, Sébastien; Popescu, Speranta-Maria; Jiménez-Moreno, Gonzalo; Bertini, Adele; Pittet, Bernard; Tricart, Pierre; Dumont, Thierry; Schwartz, Stéphane; Zheng, Zhuo; Roche, Emile; Pavia, Giulio; Gardien, Véronique

    2015-02-01

    We evaluate the topographic evolution of the southwestern Alps using Eocene to Pleistocene pollen data combined with existing sedimentological, petrographic and detrital geo- and thermochronological data. We report 32 new pollen analyses from 10 sites completed by an existing dataset of 83 samples from 14 localities situated across the southwestern Alps, including both the pro- and the retro-foreland basins. The presence of microthermic tree pollen (mainly Abies, Picea) indicates that this part of the mountain belt attained elevations over 1900 m as early as the Oligocene. Inferred rapid surface uplift during the mid-Oligocene coincided with a previously documented brief phase of rapid erosional exhumation, when maximum erosion rates may have reached values of up to 1.5-2 km/Myr. Slower long-term average exhumation rates of ∼0.3 km/Myr since the Late Oligocene helped maintaining the high Alpine topography of the southwestern Alps until today. The relative abundances of meso-microthermic tree pollen (Cathaya, Cedrus and Tsuga) and microthermic tree pollen (Abies, Picea) in the pro- and retro-foreland basin deposits, indicate that the present-day asymmetric topography, with a relatively gentle western flank and steeper eastern flank, was established early in the southwestern Alps, at least since the Early Miocene, and possibly since the Oligocene or Late Eocene. Therefore, the high topography and asymmetric morphology of this part of the Alps has been maintained throughout the past ∼30 Ma.

  18. Energy map of southwestern Wyoming, Part B: oil and gas, oil shale, uranium, and solar

    Science.gov (United States)

    Biewick, Laura R.H.; Wilson, Anna B.

    2014-01-01

    The U.S. Geological Survey (USGS) has compiled Part B of the Energy Map of Southwestern Wyoming for the Wyoming Landscape Conservation Initiative (WLCI). Part B consists of oil and gas, oil shale, uranium, and solar energy resource information in support of the WLCI. The WLCI represents the USGS partnership with other Department of the Interior Bureaus, State and local agencies, industry, academia, and private landowners, all of whom collaborate to maintain healthy landscapes, sustain wildlife, and preserve recreational and grazing uses while developing energy resources in southwestern Wyoming. This product is the second and final part of the Energy Map of Southwestern Wyoming series (also see USGS Data Series 683, http://pubs.usgs.gov/ds/683/), and encompasses all of Carbon, Lincoln, Sublette, Sweetwater, and Uinta Counties, as well as areas in Fremont County that are in the Great Divide and Green River Basins.

  19. Composition of soil microbiome along elevation gradients in southwestern highlands of Saudi Arabia.

    Science.gov (United States)

    Yasir, Muhammad; Azhar, Esam I; Khan, Imran; Bibi, Fehmida; Baabdullah, Rnda; Al-Zahrani, Ibrahim A; Al-Ghamdi, Ahmed K

    2015-03-14

    Saudi Arabia is mostly barren except the southwestern highlands that are susceptible to environmental changes, a hotspot for biodiversity, but poorly studied for microbial diversity and composition. In this study, 454-pyrosequencing of 16S rRNA gene hypervariable region V6 was used to analyze soil bacterial community along elevation gradients of the southwestern highlands. In general, lower percentage of total soil organic matter (SOM) and nitrogen were detected in the analyzed soil samples. Total 33 different phyla were identified across the samples, including dominant phyla Proteobacteria, Actinobacteria and Acidobacteria. Representative OTUs were grouped into 329 and 508 different taxa at family and genus level taxonomic classification, respectively. The identified OTUs unique to each sample were very low irrespective of the altitude. Jackknifed principal coordinates analysis (PCoA) revealed, overall differences in the bacterial community were more related to the quantity of specific OTUs than to their diversity among the studied samples. Bacterial diversity and soil physicochemical properties did not show consistent changes along the elevation gradients. The large number of OTUs shared between the studied samples suggest the presence of a core soil bacterial community in the southwestern highlands of Saudi Arabia.

  20. 36 CFR 261.73 - Regulations applicable to Region 3, Southwestern Region, as defined in § 200.2. [Reserved

    Science.gov (United States)

    2010-07-01

    ... 36 Parks, Forests, and Public Property 2 2010-07-01 2010-07-01 false Regulations applicable to Region 3, Southwestern Region, as defined in § 200.2. [Reserved] 261.73 Section 261.73 Parks, Forests... § 261.73 Regulations applicable to Region 3, Southwestern Region, as defined in § 200.2. [Reserved] ...

  1. Silvics and silviculture in the southwestern pinyon-juniper woodlands

    Science.gov (United States)

    Gerald J. Gottfried

    2004-01-01

    Southwestern pinyon-juniper and juniper woodlands cover large areas of the western United States. The woodlands have been viewed as places of beauty and sources of valuable resource products or as weed-dominated landscapes that hinder the production of forage for livestock. They are special places because of the emotions and controversies that encircle their management...

  2. Recent emissions research in southwestern shrub and grassland fuels

    Science.gov (United States)

    David R. Weise; Wayne Miller; David R. Cocker; Heejung Jung; Seyedehsan Hosseini; Marko Princevac; Robert J. Yokelson; Ian Burling; Sheryl Akagi; Shawn Urbanski; WeiMin Hao

    2015-01-01

    While it is currently challenging to use prescribed burning in chaparral and other southwestern shrub fuel types due to many constraints, any such activities require smoke management planning. Information on fuels and emissions from chaparral were limited and based on older sampling systems. The DoD SERDP program funded a project to measure fuels and smoke emissions in...

  3. Prevalence of Infertility in Women in a Southwestern Nigerian ...

    African Journals Online (AJOL)

    The prevalence and common causes of infertility in women aged between 15 and 55 years was assessed in four hospital centers in Osun State, located in the SouthWestern part of Nigeria. A survey of a consecutive sample of 200 cases of infertility were carried out in four hospital centers with a total of 50 cases of infertility ...

  4. Warm–dry collocation of recent drought in southwestern China tied to moisture transport and climate warming

    International Nuclear Information System (INIS)

    Dai Xin-Gang; Liu Ye; Wang Ping

    2015-01-01

    This study aims to investigate the recent drought in southwestern China and its association with environmental changes in moisture transport (MT) and atmospheric circulation. Climatic Research Unit grid data, in situ observations in China, and ERA-interim reanalysis are used to study the characteristics of the drought and the associated mechanism. Recent precipitation trends show a pattern of “Northern wetting and Southern drying”, similar to the anti-phase of the climate pattern prevailing during 1980–2000 in mainland China; southwestern China incurred a severe drought during 2009–2013. Wavelet analysis reveals that the drought coincides with a warm–dry phase of temperature and precipitation on a period of about 20 years and beyond 100 years, where contributions account for 43% and 57% of the deficiency of the precipitation, averaged for 2003–2012, respectively. A further investigation reveals that the drought results chiefly from the decline of the southwestern monsoon MT toward southwestern China, in addition to mid-latitude circulation changes, which leads to more blockings near the Ural Mountains and the Sea of Okhotsk in the rainy season and negative anomalies around Lake Baikal and northeast China in the dry season. These anomalies are likely to be correlated with global sea surface temperature changes and need to be studied further. (paper)

  5. Seasonal mixed layer heat balance of the southwestern tropical Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Foltz, G.R.; Vialard, J.; PraveenKumar, B.; McPhaden, M.J.

    from a long-term moored buoy are used in conjunction with satellite, in situ, and atmospheric reanalysis datasets to analyze the seasonal mixed layer heat balance in the thermocline ridge region of the southwestern tropical Indian Ocean. This region...

  6. Length-weight relationships for fishes off the southwestern coast of ...

    African Journals Online (AJOL)

    Length-weight relationships are presented for 24 fish species representing 12 families captured monthly from February 2009 to March 2010, off the southwestern coast of Taiwan. 12 of these species are documented in fishbase, but no length-weight relationships were available. One record of maximum length was recorded.

  7. Consumption of seeds of southwestern white pine (Pinus strobiformis) by Black Bear (Ursus americanus)

    Science.gov (United States)

    Mattson, David J.; Arundel, Terry A.

    2013-01-01

    We report a discovery of black bears (Ursus americanus) consuming seeds of southwestern white pine (Pinus strobiformis) on north slopes of the San Francisco Peaks near Flagstaff, Arizona, in high-elevation, mixed-species conifer forest. In one instance, a bear had obtained seeds from cones excavated from a larder horde made by a red squirrel (Tamiasciurus hudsonicus). Consumption of seeds of southwestern white pine by bears had not been previously documented. This discovery adds to the number of species of pine used by bears for food as well as the geographic range within which the behavior occurs.

  8. The Forest Service, Rocky Mountain Research Station's Southwestern Borderlands Ecosystem Management Project: building on ten years of success [Abstract

    Science.gov (United States)

    Gerald J. Gottfried; Carleton B. Edminster

    2005-01-01

    The USDA Forest Service initiated the Southwestern Borderlands Ecosystem Management Project in 1994. The Project concentrates on the unique, relatively unfragmented landscape of exceptional biological diversity in southeastern Arizona and southwestern New Mexico. Its mission is to: "Contribute to the scientific basis for developing and implementing a comprehensive...

  9. What drives low-severity fire in the southwestern USA?

    Science.gov (United States)

    Sean A. Parks; Solomon Z. Dobrowski; Matthew H. Panunto

    2018-01-01

    Many dry conifer forests in the southwestern USA and elsewhere historically (prior to the late 1800’s) experienced fairly frequent surface fire at intervals ranging from roughly five to 30 years. Due to more than 100 years of successful fire exclusion, however, many of these forests are now denser and more homogenous, and therefore they have a greater probability of...

  10. Fragmentation patterns of evergreen oak woodlands in Southwestern Iberia

    DEFF Research Database (Denmark)

    Costa, A.; Madeira, M.; Lima Santos, J.

    2014-01-01

    Mediterranean evergreen oak woodlands (composed of Quercus suber L. and Quercus rotundifolia Lam.) are becoming increasingly fragmented in the human-modified landscapes of Southwestern Portugal and Spain. Previous studies have largely neglected to assess the spatial changes of oak woodlands...... patterns of oak recruitment and therefore, its study may be helpful in highlighting future baselines for the sustainable management of oak woodlands....

  11. Estimation of the lion ( Panthera leo ) population in the southwestern ...

    African Journals Online (AJOL)

    A previous estimate of the lion (Panthera leo) population in the southwestern Kgalagadi Transfrontier Park (KTP) was made over 20 years ago. This together with increased fears regarding the viability of the population as a result of recent killings of roaming animals, an observed increase in non-violent mortalities during ...

  12. A Natural History Summary and Survey Protocol for the Southwestern Willow Flycatcher

    Science.gov (United States)

    Sogge, Mark K.; ,; Ahlers, Darrell; ,; Sferra, Susan J.; ,

    2010-01-01

    The Southwestern Willow Flycatcher (Empidonax traillii extimus) has been the subject of substantial research, monitoring, and management activity since it was listed as an endangered species in 1995. When proposed for listing in 1993, relatively little was known about the flycatcher's natural history, and there were only 30 known breeding sites supporting an estimated 111 territories rangewide (Sogge and others, 2003a). Since that time, thousands of presence/absences surveys have been conducted throughout the historical range of the flycatcher, and many studies of its natural history and ecology have been completed. As a result, the ecology of the flycatcher is much better understood than it was just over a decade ago. In addition, we have learned that the current status of the flycatcher is better than originally thought: as of 2007, the population was estimated at approximately 1,300 territories distributed among approximately 280 breeding sites (Durst and others, 2008a). Concern about the Southwestern Willow Flycatcher on a rangewide scale was brought to focus by Unitt (1987), who described declines in flycatcher abundance and distribution throughout the Southwest. E. t. extimus populations declined during the 20th century, primarily because of habitat loss and modification from activities, such as dam construction and operation, groundwater pumping, water diversions, and flood control. In 1991, the U.S. Fish and Wildlife Service (USFWS) designated the Southwestern Willow Flycatcher as a candidate category 1 species (U.S. Fish and Wildlife Service, 1991). In July 1993, the USFWS proposed to list E. t. extimus as an endangered species and to designate critical habitat under the Act (U.S. Fish and Wildlife Service, 1993). A final rule listing E. t. extimus as endangered was published in February 1995 (U.S. Fish and Wildlife Service, 1995); critical habitat was designated in 1997 (U.S. Fish and Wildlife Service, 1997). The USFWS Service released a Recovery Plan for

  13. Silviculture of southwestern ponderosa pine: The status of our knowledge

    Science.gov (United States)

    Gilbert H. Schubert

    1974-01-01

    Describes the status of our knowledge of ponderosa pine silviculture in the southwestern States of Arizona, Colorado, New Mexico, and Utah. Economic value, impact on other uses, and the timber resource are discussed first, followed by ecological background, site quality, growth and yield, and silviculture and management. Relevant literature is discussed along with...

  14. HIV/AIDS: Knowledge and attitudes of dentists in South-Western ...

    African Journals Online (AJOL)

    Objective: The purpose of this study was to assess the knowledge and attitudes of dentists in South-Western Nigeria in relation to HIV/AIDS. Materials and methods: A questionnaire survey of 164 dentists in Lagos, Ibadan and Benin The data was analyzed using Epi-info statistical software. Results: The modes of ...

  15. [The role of natural environment in spreading of hantavirus--model of the correlation between host, pathogen and human infections].

    Science.gov (United States)

    Baumann, Anna; Dudek, Dorota; Sadkowska-Todys, Małgorzata

    2007-01-01

    The environmental changes caused by humans influence ecosystem and thus have significant impact on occurrence of emerging and re-emerging diseases. The hantavirus infection belong to the one of them. The aim of this paper was to present current knowledge about relationship between hantavirus, their natural host and the spread of the infection to people. Rodents constitute both the natural host of the hantaviruses and the reservoir of hantavirus for environment. Circulation of the virus in the rodent population is crucial to maintain the virus in the environment. The individual characteristics of rodents influence on risk of infection with hantavirus. However, this relationship is still unexplained. Risk of pathogen exposure often increases with age and behavioral differences associated with the sex of the susceptible individual. Mating behaviors seem to play an important role in the spread of the virus among rodents. Human incidence of hantavirus infection has in general been found to correlate to the population size of rodent host especially in the model of nephropathia epidemica (NE; a mild form of HFRS), Puumala virus (PUU) and bank voles. The occurrence of hantavirus infections in humans is assumed to rise as a secondary effect from altered population sizes of rodents in a changing environment due to e.g. mast years, forest fragmentation, global warming.

  16. Mixing of M Segment DNA Vaccines to Hantaan Virus and Puumala Virus Reduces Their Immunogenicity in Hamsters

    National Research Council Canada - National Science Library

    Spik, Kristin W; Badger, Catherine; Mathiessen, Iacob; Tjelle, Torunn; Hooper, Jay W; Schmaljohn, Connie

    2008-01-01

    ... them to hamsters separately or as mixtures by gene gun or by electroporation. Both vaccines elicited neutralizing antibodies when given alone but when they were delivered as a mixture, antibodies to only one of the two hantaviruses could be detected...

  17. BEHAVIOR AND PREY OF NESTING RED-SHOULDERED HAWKS IN SOUTHWESTERN OHIO

    Science.gov (United States)

    We used direct observations to quantify prey types, prey delivery rate, and adult and nestling behavior at nests of Red-shouldered Hawks (Buteo lineatus) in suburban southwestern Ohio. Twenty-one nests were observed for a total of 256 hr in 1997-2001. Small mammals made up the ...

  18. Study on climate change in Southwestern China

    Energy Technology Data Exchange (ETDEWEB)

    Li, Zongxing

    2015-03-01

    Nominated by Chinese Academy of Sciences as an outstanding Ph.D. thesis. Offers a needed exploration of the temporal and spatial pattern of climate change in southwestern China. Explores the action mechanism among the large-scale atmospheric circulation system, the complicated topography, human activities and regional climate changes. Analyzes the response of glaciers to climate change from the aspects of morphology of the glacier, glacial mass balance and the process of hydrology. This thesis confirms many changes, including sharp temperature rise, interannual variability of precipitation, extreme climate events and significant decreases of sunshine duration and wind speed in southwestern China, and systemically explores the action mechanism between large-scale atmospheric circulation systems, the complicated topography, human activities and regional climate changes. This study also analyzes the response of glaciers to climate change so that on the one hand it clearly reflects the relationship between glacier morphologic changes and climate change; on the other, it reveals the mechanism of action of climate warming as a balance between energy and matter. The achievements of this study reflect a significant contribution to the body of research on the response of climate in cold regions, glaciers and human activities to a global change against the background of the typical monsoon climate, and have provided scientific basis for predictions, countermeasures against disasters from extreme weather, utilization of water and the establishment of counterplans to slow and adapt to climate change. Zongxing Li works at the Cold and Arid Region Environmental and Engineering Research Institute, Chinese Academy of Sciences, China.

  19. Study on climate change in Southwestern China

    International Nuclear Information System (INIS)

    Li, Zongxing

    2015-01-01

    Nominated by Chinese Academy of Sciences as an outstanding Ph.D. thesis. Offers a needed exploration of the temporal and spatial pattern of climate change in southwestern China. Explores the action mechanism among the large-scale atmospheric circulation system, the complicated topography, human activities and regional climate changes. Analyzes the response of glaciers to climate change from the aspects of morphology of the glacier, glacial mass balance and the process of hydrology. This thesis confirms many changes, including sharp temperature rise, interannual variability of precipitation, extreme climate events and significant decreases of sunshine duration and wind speed in southwestern China, and systemically explores the action mechanism between large-scale atmospheric circulation systems, the complicated topography, human activities and regional climate changes. This study also analyzes the response of glaciers to climate change so that on the one hand it clearly reflects the relationship between glacier morphologic changes and climate change; on the other, it reveals the mechanism of action of climate warming as a balance between energy and matter. The achievements of this study reflect a significant contribution to the body of research on the response of climate in cold regions, glaciers and human activities to a global change against the background of the typical monsoon climate, and have provided scientific basis for predictions, countermeasures against disasters from extreme weather, utilization of water and the establishment of counterplans to slow and adapt to climate change. Zongxing Li works at the Cold and Arid Region Environmental and Engineering Research Institute, Chinese Academy of Sciences, China.

  20. Entomologic Inoculation Rates of Anopheles arabiensis in Southwestern Ethiopia

    OpenAIRE

    Ulesido, Fekadu Massebo; Balkew, Meshesha; Gebre-Michael, Teshome; Lindtjørn, Bernt

    2013-01-01

    We collected anophelines every second week for one year from randomly selected houses in southwestern Ethiopia by using Centers for Disease Control (CDC) light traps, pyrethrum spray catches, and artificial pit shelter constructions to detect circumsporozoite proteins and estimate entomologic inoculation rates (EIRs). Of 3,678 Anopheles arabiensis tested for circumsporozoite proteins, 11 were positive for Plasmodium falciparum and three for P. vivax. The estimated annual P. falciparum EIR of ...

  1. Fire effects on Gambel oak in southwestern ponderosa pine-oak forests

    Science.gov (United States)

    Scott R. Abella; Peter Z. Fulé

    2008-01-01

    Gambel oak (Quercus gambelii) is ecologically and aesthetically valuable in southwestern ponderosa pine (Pinus ponderosa) forests. Fire effects on Gambel oak are important because fire may be used in pine-oak forests to manage oak directly or to accomplish other management objectives. We used published literature to: (1) ascertain...

  2. Ebola Virus and Marburg Virus

    Science.gov (United States)

    Ebola virus and Marburg virus Overview Ebola virus and Marburg virus are related viruses that cause hemorrhagic fevers — illnesses marked by severe bleeding (hemorrhage), organ failure and, in many ...

  3. Phytophthora Species in Rivers and Streams of the Southwestern United States.

    Science.gov (United States)

    Stamler, Rio A; Sanogo, Soumalia; Goldberg, Natalie P; Randall, Jennifer J

    2016-08-01

    Phytophthora species were isolated from rivers and streams in the southwestern United States by leaf baiting and identified by sequence analysis of internal transcribed spacer (ITS) ribosomal DNA (rDNA). The major waterways examined included the Rio Grande River, Gila River, Colorado River, and San Juan River. The most prevalent species identified in rivers and streams were Phytophthora lacustris and P. riparia, both members of Phytophthora ITS clade 6. P. gonapodyides, P. cinnamomi, and an uncharacterized Phytophthora species in clade 9 were also recovered. In addition, six isolates recovered from the Rio Grande River were shown to be hybrids of P. lacustris × P. riparia Pathogenicity assays using P. riparia and P. lacustris failed to produce any disease symptoms on commonly grown crops in the southwestern United States. Inoculation of Capsicum annuum with P. riparia was shown to inhibit disease symptom development when subsequently challenged with P. capsici, a pathogenic Phytophthora species. Many Phytophthora species are significant plant pathogens causing disease on a large variety of crops worldwide. Closer examinations of streams, rivers, and forest soils have also identified numerous Phytophthora species that do not appear to be phytopathogens and likely act as early saprophytes in aquatic and saturated environments. To date, the Phytophthora species composition in rivers and streams of the southwestern United States has not been evaluated. This article details a study to determine the identity and prevalence of Phytophthora species in rivers and streams located in New Mexico, Arizona, Colorado, Utah, and Texas. Isolated species were evaluated for pathogenicity on crop plants and for their potential to act as biological control agents. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

  4. Multilocus genotyping of Giardia duodenalis in captive non-human primates in Sichuan and Guizhou provinces, Southwestern China.

    Directory of Open Access Journals (Sweden)

    Zhijun Zhong

    Full Text Available Giardia duodenalis is a common human and animal pathogen. It has been increasingly reported in wild and captive non-human primates (NHPs in recent years. However, multilocus genotyping information for G. duodenalis infecting NHPs in southwestern China is limited. In the present study, the prevalence and multilocus genotypes (MLGs of G. duodenalis in captive NHPs in southwestern China were determined. We examined 207 fecal samples from NHPs in Sichuan and Guizhou provinces, and 16 specimens were positive for G. duodenalis. The overall infection rate was 7.7%, and only assemblage B was identified. G. duodenalis was detect positive in northern white-cheeked gibbon (14/36, 38.9%, crab-eating macaque (1/60, 1.7% and rhesus macaques (1/101, 0.9%. Multilocus sequence typing based on beta-giardin (bg, triose phosphate isomerase (tpi and glutamate dehydrogenase (gdh revealed nine different assemblage B MLGs (five known genotypes and four novel genotypes. Based on a phylogenetic analysis, one potentially zoonotic genotype of MLG SW7 was identified in a northern white-cheeked gibbon. A high degree of genetic diversity within assemblage B was observed in captive northern white-cheeked gibbons in Southwestern China, including a potentially zoonotic genotype, MLG SW7. To the best of our knowledge, this is the first report using a MLGs approach to identify G. duodenalis in captive NHPs in Southwestern China.

  5. Philorhizus occitanus sp. n. from the South-Western Alps (Piedmont, Italy (Coleoptera: Carabidae, Dromiini

    Directory of Open Access Journals (Sweden)

    Gianni Allegro

    2015-12-01

    Full Text Available Philorhizus occitanus sp. n. from the South-Western Alps (Ellero Valley and Maira Valley is described. This new species is similar to P. crucifer and P. notatus as far as the external morphology is concerned, but it is distinguished by the color pattern and the shape of elytra, as well as by the features of the median lobe of aedeagus. P. liguricus, which is easily distinguished from P. occitanus sp. n. by the external morphology, was already recorded from the South-Western Alps and from the Ligurian Apennines. P. occitanus sp. n. is a likely close relative of P. notatus, although the affinities of this relict flightless new species remain uncertain.

  6. Status of grey seals along mainland Europe from the Southwestern Baltic to France

    Directory of Open Access Journals (Sweden)

    Tero Härkönen

    2007-01-01

    Full Text Available The grey seal was a common species along mainland Europe during the Stone Age (8,000-5,500 BC. Along the North Sea coast populations started to decline substantially during the 11th century as a result of excessive hunting. The last breeding populations disappeared in the 16th century in the Wadden Sea, and before 1900 in the Kattegat-Skagerrak and the Southwestern Baltic as a result of an extermination campaign. No regular pupping occurred along mainland Europe until the end of the 1970s, when a breeding colony was established near Amrum in the German Wadden Sea. Somewhat later, additional breeding sites were discovered near Terschelling in the Dutch Wadden Sea (1980, at Helgoland, and off Brittany in France. Tracking of movements indicate these seal groups to be linked to the larger populations in the UK. Numbers of grey seals in the recolonised areas have increased over the years, but in the Kattegat-Skagerrak stable numbersof about 25 individuals have been observed since the 1970s, whereas more than 100 grey seals are found in the Southwestern Baltic. In the southeastern North Sea, 120 grey seals occur during moult at Helgoland, 120 in the German and over 1,130 in the Dutch parts of the Wadden Sea in 2004. Along the southern Dutch and Belgian coasts small groups are regularly observed, but no colonies have yet been established. In the colonies off Brittany in France about 105 grey seals have been counted. Successful pupping has only been recorded 3 times in the Kattegat-Skagerrak over the past 30 years, and 2-4 pups are born annually in France and the Southwestern Baltic. The relative strongholds for breeding along the European continent are the Dutch Wadden Sea, where in 2003/2004 at least 150 pups were recorded, Amrum in the German Wadden Sea (23 pups and Helgoland (8 pups. Consequently, total numbers of counted grey seals from the Southwestern Baltic to France amounted to at least 1,600 in 2004, while about 190 pups were born in the area.

  7. Deep groundwater quantity and quality in the southwestern US

    Science.gov (United States)

    Kang, M.; Ayars, J. E.; Jackson, R. B.

    2017-12-01

    Groundwater demands are growing in many arid regions and adaptation through the use of non-traditional resources during extreme droughts is increasingly common. One such resource is deep groundwater, which we define as deeper than 300 m and up to several kilometer-depths. Although deep groundwater has been studied in the context of oil and gas, geothermal, waste disposal, and other uses, it remains poorly characterized, especially for the purposes of human consumption and irrigation uses. Therefore, we evaluate deep groundwater quantity and quality within these contexts. We compile and analyze data from water management agencies and oil and gas-based sources for the southwestern US, with a detailed look at California's Central Valley. We also use crop tolerance thresholds to evaluate deep groundwater quality for irrigation purposes. We find fresh and usable groundwater volume estimates in California's Central Valley to increase by three- and four-fold respectively when depths of up to 3 km are considered. Of the ten basins in the southwestern US with the most data, we find that the Great Basin has the greatest proportions of fresh and usable deep groundwater. Given the potentially large deep groundwater volumes, it is important to characterize the resource, guard against subsidence where extracted, and protect it for use in decades and centuries to come.

  8. A plan for landscape fire restoration in the Southwestern Borderlands

    Science.gov (United States)

    Gerald J. Gottfried; Larry S. Allen

    2009-01-01

    Fires were prevalent in the Southwestern Borderlands of Arizona and New Mexico prior to the arrival of European-American settlers in the 1880s. The almost total exclusion of fires for more than 100 years has been linked to declines in biological diversity and a loss of productivity associated with the encroachment of woody vegetation into the grasslands and open...

  9. Hydrology of southwestern encinal oak ecosystems: A review and more

    Science.gov (United States)

    Gerald J. Gottfried; Peter F. Ffolliott; Daniel G. Neary

    2007-01-01

    Information about the hydrology of oak ecosystems of the southwestern United States and northern Mexico is lacking (Lopes and Ffolliott 1992, Baker et al. 1995) even though the woodlands and savannas cover more than 31,000 square miles. These ecosystems generally are found between 4,000 and 7,300 feet in elevation. Precipitation occurs in the winter and summer and...

  10. Haplosclerida (Porifera: Demospongiae) from the coast of Maranhao State, Brazil, Southwestern Atlantic.

    NARCIS (Netherlands)

    Campos, M.; Mothes, B.; Eckert, R.; van Soest, R.W.M.

    2005-01-01

    This work deals with haplosclerid sponges off the coast of Maranhão State, northeastern coast of Brazilian shelf (southwestern Atlantic). A new species is described, Haliclona (Halichoclona) lernerae. Four species are recorded for the first time for the Brazilian coast: Amphimedon caribica

  11. Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean

    NARCIS (Netherlands)

    Alves Junior, Nelson; Meirelles, Pedro Milet; de Oliveira Santos, Eidy; Dutilh, Bas; Silva, Genivaldo G Z; Paranhos, Rodolfo; Cabral, Anderson S; Rezende, Carlos; Iida, Tetsuya; de Moura, Rodrigo L; Kruger, Ricardo Henrique; Pereira, Renato C; Valle, Rogério; Sawabe, Tomoo; Thompson, Cristiane; Thompson, Fabiano

    2014-01-01

    Microbial oceanography studies have demonstrated the central role of microbes in functioning and nutrient cycling of the global ocean. Most of these former studies including at Southwestern Atlantic Ocean (SAO) focused on surface seawater and benthic organisms (e.g., coral reefs and sponges). This

  12. Two new species of Indonemoura (Plecoptera: Nemouridae) from Yunnan Province of southwestern China.

    Science.gov (United States)

    Li, Weihai; Wu, Limin; Yang, Ding

    2017-02-09

    Two new species of the nemourid genus Indonemoura are described, Indonemoura curvispina sp. nov. and I. spirocornua sp. nov., from the Gaoligong Mountains of Yunnan Province of southwestern China. The taxonomic relationships with related species are discussed.

  13. Impact of the Gulf of California SST on simulating precipitation and crop productivity in the Southwestern United States

    Science.gov (United States)

    Kim, S.; Kim, J.; Prasad, A. K.; Stack, D. H.; El-Askary, H. M.; Kafatos, M.

    2012-12-01

    Like other ecosystems, agricultural productivity is substantially affected by climate factors. Therefore, accurate climatic data (i.e. precipitation, temperature, and radiation) is crucial to simulating crop yields. In order to understand and anticipate climate change and its impacts on agricultural productivity in the Southwestern United States, the WRF regional climate model (RCM) and the Agricultural Production Systems sIMulator (APSIM) were employed for simulating crop production. 19 years of WRF RCM output show that there is a strong dry bias during the warm season, especially in Arizona. Consequently, the APSIM crop model indicates very low crop yields in this region. We suspect that the coarse resolution of reanalysis data could not resolve the relatively warm Sea Surface Temperature (SST) in the Gulf of California (GC), causing the SST to be up to 10 degrees lower than the climatology. In the Southwestern United States, a significant amount of precipitation is associated with North American Monsoon (NAM). During the monsoon season, the low-level moisture is advected to the Southwestern United States via the GC, which is known to be the dominant moisture source. Thus, high-resolution SST data in the GC is required for RCM simulations to accurately represent a reasonable amount of precipitation in the region, allowing reliable evaluation of the impacts on regional ecosystems.and evaluate impacts on regional ecosystems. To evaluate the influence of SST on agriculture in the Southwestern U.S., two sets of numerical simulations were constructed: a control, using unresolved SST of GC, and daily updated SST data from the MODIS satellite sensor. The meteorological drivers from each of the 6 year RCM runs were provided as input to the APSIM model to determine the crop yield. Analyses of the simulated crop production, and the interannual variation of the meteorological drivers, demonstrate the influence of SST on crop yields in the Southwestern United States.

  14. Genetic structure and evidence of putative Darwinian diversifying selection in the Potato yellow vein virus (PYVV

    Directory of Open Access Journals (Sweden)

    Giovanni Chaves-Bedoya

    2013-08-01

    Full Text Available The population structure and genetic variation of Potato yellow vein virus (PYVV were estimated by analysis of the nucleotide and deduced amino acid sequence of the coat protein of 69 isolates, reported in GenBank, from Solanum tuberosum (ST and Solanum phureja (SP hosts from different regions; predominantly Cundinamarca, Antioquia and Nariño, located in central and southwestern Colombia. Bioinformatics analysis revealed that despite the wide geographic distribution of different hosts and different collecting years, PYVV maintains a genetic similarity between 97.1 to 100.0%, indicating high spatial and temporal genetic stability of the major coat protein. No recombination events were found, but evidence was seen for the first time that this protein could be undergoing Darwinian diversifying selection

  15. Traditional ranching heritage and cultural continuity in the southwestern United States

    Science.gov (United States)

    Carol Raish; Alice M. McSweeney

    2008-01-01

    This study, conducted among ranchers on the Santa Fe and Carson National Forests in the Southwestern United States, examines the role of ranching in maintaining traditional heritage and cultural continuity. The mainly Hispanic ranching families of northern New Mexico first came into the region in 1598 with Spanish colonization. Many of the villages received community...

  16. Ecological restoration of southwestern ponderosa pine ecosystems: A broad perspective

    Science.gov (United States)

    Allen, Craig D.; Savage, Melissa; Falk, Donald A.; Suckling, Kieran F.; Swetnam, Thomas W.; Schulke, Todd; Stacey, Peter B.; Morgan, Penelope; Hoffman, Martos; Klingel, Jon T.

    2002-01-01

    The purpose of this paper is to promote a broad and flexible perspective on ecological restoration of Southwestern (U.S.) ponderosa pine forests. Ponderosa pine forests in the region have been radically altered by Euro-American land uses, including livestock grazing, fire suppression, and logging. Dense thickets of young trees now abound, old-growth and biodiversity have declined, and human and ecological communities are increasingly vulnerable to destructive crown fires. A consensus has emerged that it is urgent to restore more natural conditions to these forests. Efforts to restore Southwestern forests will require extensive projects employing varying combinations of young-tree thinning and reintroduction of low-intensity fires. Treatments must be flexible enough to recognize and accommodate: high levels of natural heterogeneity; dynamic ecosystems; wildlife and other biodiversity considerations; scientific uncertainty; and the challenges of on-the-ground implementation. Ecological restoration should reset ecosystem trends toward an envelope of “natural variability,” including the reestablishment of natural processes. Reconstructed historic reference conditions are best used as general guides rather than rigid restoration prescriptions. In the long term, the best way to align forest conditions to track ongoing climate changes is to restore fire, which naturally correlates with current climate. Some stands need substantial structural manipulation (thinning) before fire can safely be reintroduced. In other areas, such as large wilderness and roadless areas, fire alone may suffice as the main tool of ecological restoration, recreating the natural interaction of structure and process. Impatience, overreaction to crown fire risks, extractive economics, or hubris could lead to widespread application of highly intrusive treatments that may further damage forest ecosystems. Investments in research and monitoring of restoration treatments are essential to refine

  17. Rapid acidification of mode and intermediate waters in the southwestern Atlantic Ocean

    NARCIS (Netherlands)

    Salt, L.A.; van Heuven, S.M.A.C.; Claus, M.E.; Jones, E.M.; de Baar, H.J.W.

    2015-01-01

    Observations along the southwestern Atlantic WOCE A17 line made during the Dutch GEOTRACESNL programme (2010-2011) were compared with historical data from 1994 to quantify the changes in the anthropogenic component of the total pool of dissolved inorganic carbon (Delta C-ant). Application of the

  18. Clusia nubium (Clusiaceae): a new species from cloud-forests of southwestern Ecuador

    DEFF Research Database (Denmark)

    Gustafsson, Mats; Borchsenius, Finn

    2016-01-01

    Clusia nubium from southwestern Ecuador is described as a species new to science. It grows as a hemiepiphyte in lower montane cloud forest. The species belongs to Clusia sect. Retinostemon, a largely Andean group characterized by male flowers with a resin-secreting synandrium of completely fused...

  19. Searching urinary tumor-associated proteins for bladder transitional cell carcinoma in southwestern Taiwan using gel-based proteomics

    Directory of Open Access Journals (Sweden)

    Chia-Cheng Su

    2016-12-01

    Conclusion: In this paper, 11 de-regulated proteins were observed in the urinary specimens of BTTC patients from the southwestern coast of Taiwan where Blackfoot disease is endemic and the unusually high incidence of BTTC in this area might attribute to high arsenic content in the drinking water. It is possible that long-term arsenic-induced alteration of these de-regulated proteins, most of which were extracellularmatrix – (ECM related proteins which may play roles in regulating the immune response, signal transduction and tumor invasions, might be involved in BTTC development in southwestern Taiwan.

  20. Transit traverse in Missouri, 1900-1937. Part 5, Southwestern Missouri, 1900-37

    Science.gov (United States)

    Staack, John G.

    1940-01-01

    This bulletin, which for convenience is to be published in eight parts, contains the results of all transit traverse* done In Missouri through 1937 by the Geological Survey, United States Department of the Interior, including those heretofore published. (See page X.) Each of the parts deals with one of eight sections into which the State has been divided for this purpose and which have been designated northeastern, northwestern, southeastern, southwestern, central, east-central, south-central, and west-central Missouri. In each part descriptions of the points for which geodetic positions have been determined are listed according to the quadrangles in which the points occur. Results of transit traverse other than that done by the Geological Survey have not been included.Southwestern Missouri, as the term is used in this bulletin and as the subject of part 5 of the bulletin, is that section of the State lying south of latitude 38°00' and west of longitude 93°00'.

  1. Isolation of Intestinal Parasites of Public Health Importance from Cockroaches (Blattella germanica) in Jimma Town, Southwestern Ethiopia.

    Science.gov (United States)

    Hamu, Haji; Debalke, Serkadis; Zemene, Endalew; Birlie, Belay; Mekonnen, Zeleke; Yewhalaw, Delenasaw

    2014-01-01

    Cockroaches are claimed to be mechanical transmitters of disease causing microorganisms such as intestinal parasites, bacteria, fungi, and viruses. This study assessed the potential of the German cockroach Blattella germanica in the mechanical transmission of intestinal parasites of public health importance. A total of 2010 cockroaches were collected from 404 households in Jimma Town, southwestern Ethiopia. All the collected cockroaches were identified to species as B. germanica. The contents of their gut and external body parts were examined for the presence of intestinal parasites. Overall, 152 (75.6%) of the 210 batches were found to harbor at least one species of human intestinal parasite. Ascaris lumbricoides, Trichuris trichiura, Taenia spp, Strongyloides-like parasite, Entamoeba histolytica/dispar/moshkovski, Giardia duodenalis and Balantidium coli were detected from gut contents. Moreover, parasites were also isolated from the external surface in 22 (10.95%) of the batches. There was significant difference in parasite carriage rate of the cockroaches among the study sites (P = 0.013). In conclusion, B. germanica was found to harbor intestinal parasites of public health importance. Hence, awareness on the potential role of cockroaches in the mechanical transmission of human intestinal parasites needs to be created. Moreover, further identification of the Strongyloides-like worm is required using molecular diagnostics.

  2. Isolation of Intestinal Parasites of Public Health Importance from Cockroaches (Blattella germanica in Jimma Town, Southwestern Ethiopia

    Directory of Open Access Journals (Sweden)

    Haji Hamu

    2014-01-01

    Full Text Available Cockroaches are claimed to be mechanical transmitters of disease causing microorganisms such as intestinal parasites, bacteria, fungi, and viruses. This study assessed the potential of the German cockroach Blattella germanica in the mechanical transmission of intestinal parasites of public health importance. A total of 2010 cockroaches were collected from 404 households in Jimma Town, southwestern Ethiopia. All the collected cockroaches were identified to species as B. germanica. The contents of their gut and external body parts were examined for the presence of intestinal parasites. Overall, 152 (75.6% of the 210 batches were found to harbor at least one species of human intestinal parasite. Ascaris lumbricoides, Trichuris trichiura, Taenia spp, Strongyloides-like parasite, Entamoeba histolytica/dispar/moshkovski, Giardia duodenalis and Balantidium coli were detected from gut contents. Moreover, parasites were also isolated from the external surface in 22 (10.95% of the batches. There was significant difference in parasite carriage rate of the cockroaches among the study sites (P=0.013. In conclusion, B. germanica was found to harbor intestinal parasites of public health importance. Hence, awareness on the potential role of cockroaches in the mechanical transmission of human intestinal parasites needs to be created. Moreover, further identification of the Strongyloides-like worm is required using molecular diagnostics.

  3. Morphological and interlayer geochemical studies on manganese nodules from the southwestern Carlsberg ridge

    Digital Repository Service at National Institute of Oceanography (India)

    Valsangkar, A.B.; Rajamanickam, G.V.; Karisiddaiah, S.M.; Siddiquie, H.N.

    Mixed facies of manganese nodules from the southwestern Carlberg Ridge have been analysed for Mn, Fe, Ni, Cu, Co and Zn. Seventy one analyses including the averages presented for outer layer, inner layer and near-core material. Morphological studies...

  4. Monsoon-facilitated characteristics and transport of atmospheric mercury at a high-altitude background site in southwestern China

    Directory of Open Access Journals (Sweden)

    H. Zhang

    2016-10-01

    Full Text Available To better understand the influence of monsoonal climate and transport of atmospheric mercury (Hg in southwestern China, measurements of total gaseous mercury (TGM, defined as the sum of gaseous elemental mercury, GEM, and gaseous oxidized mercury, GOM, particulate bound mercury (PBM and GOM were carried out at Ailaoshan Station (ALS, 2450 m a.s.l. in southwestern China from May 2011 to May 2012. The mean concentrations (± SD for TGM, GOM and PBM were 2.09 ± 0.63, 2.2 ± 2.3 and 31.3 ± 28.4 pg m−3, respectively. TGM showed a monsoonal distribution pattern with relatively higher concentrations (2.22 ± 0.58 ng m−3, p  =  0.021 during the Indian summer monsoon (ISM, from May to September and the east Asia summer monsoon (EASM, from May to September periods than that (1.99 ± 0.66 ng m−3 in the non-ISM period. Similarly, GOM and PBM concentrations were higher during the ISM period than during the non-ISM period. This study suggests that the ISM and the EASM have a strong impact on long-range and transboundary transport of Hg between southwestern China and south and southeast Asia. Several high TGM events were accompanied by the occurrence of northern wind during the ISM period, indicating anthropogenic Hg emissions from inland China could rapidly increase TGM levels at ALS due to strengthening of the EASM. Most of the TGM and PBM events occurred at ALS during the non-ISM period. Meanwhile, high CO concentrations were also observed at ALS, indicating that a strong south tributary of westerlies could have transported Hg from south and southeast Asia to southwestern China during the non-ISM period. The biomass burning in southeast Asia and anthropogenic Hg emissions from south Asia are thought to be the source of atmospheric Hg in remote areas of southwestern China during the non-ISM period.

  5. Effect of cement production on vegetation in a part of southwestern ...

    African Journals Online (AJOL)

    The impact of cement dust emissions from the factory of West African Portland Cement at Ewekoro in Southwestern Nigeria on the surrounding vegetation was investigated. Sample plots of 20 m x 20 m were established at 1 km intervals from the factory site up to a distance of 10 km intervals from the factory site up to a ...

  6. High Prevalence of Tula Hantavirus in Common Voles in The Netherlands.

    Science.gov (United States)

    Maas, Miriam; de Vries, Ankje; van Roon, Annika; Takumi, Katsuhisa; van der Giessen, Joke; Rockx, Barry

    2017-03-01

    Tula virus (TULV) is a zoonotic hantavirus. Knowledge about TULV in the Netherlands is very scarce. Therefore in 2014, 49 common voles (Microtus arvalis) from a region in the south of the Netherlands, and in 2015, 241 common voles from regions in the north of the Netherlands were tested with the TULV quantitative RT-PCR. In the southern region, prevalence of TULV was 41% (20/49). In the northern regions, prevalence ranged from 12% (4/34) to 45% (17/38). Phylogenetic analysis of the obtained sequences showed that the regions fall within different clusters. Voles from the south were also tested on-site for the presence of hantavirus antibodies, but serology results were poorly associated with qRT-PCR results. These findings suggest that TULV may be more widespread than previously thought. No human TULV cases have been reported thus far in the Netherlands, but differentiation between infection by TULV or the closely related Puumala virus is not made in humans in the Netherlands, thus cases may be misdiagnosed.

  7. Spatial and Temporal Epidemiology of Nephropathia Epidemica Incidence and Hantavirus Seroprevalence in Rodent Hosts: Identification of the Main Environmental Factors in Europe.

    Science.gov (United States)

    Monchatre-Leroy, E; Crespin, L; Boué, F; Marianneau, P; Calavas, D; Hénaux, V

    2017-08-01

    In Europe, the increasing number of nephropathia epidemica (NE) infections in humans, caused by Puumala virus carried by bank voles (Myodes glareolus), has triggered studies of environmental factors driving these infections. NE infections have been shown to occur in specific geographical areas characterized by environmental factors that influence the distribution and dynamics of host populations and virus persistence in the soil. Here, we review the influence of environmental conditions (including climate factors, food availability and habitat conditions) with respect to incidence in humans and seroprevalence in rodents, considering both direct and indirect transmission pathways. For each type of environmental factor, results and discrepancies between studies are presented and examined in the light of biological hypotheses. Overall, food availability and temperature appear to be the main drivers of host seroprevalence and NE incidence, but data quality and statistical approaches varied greatly among studies. We highlight the issues that now need to be addressed and suggest improvements for study design in regard to the current knowledge on hantavirus epidemiology. © 2016 Blackwell Verlag GmbH.

  8. THE subfossil occurrence and paleoecological significance of small mammals at ankilitelo cave, southwestern Madagascar

    Science.gov (United States)

    Muldoon, K.M.; De Blieux, D. D.; Simons, E.L.; Chatrath, P.S.

    2009-01-01

    Small mammals are rarely reported from subfossil sites in Madagascar despite their importance for paleoenvironmental reconstruction, especially as it relates to recent ecological changes on the island. We describe the uniquely rich subfossil small mammal fauna from Ankilitelo Cave, southwestern Madagascar. The Ankilitelo fauna is dated to the late Holocene (???500 years ago), documenting the youngest appearances of the extinct giant lemur taxa Palaeopropithecus, Megaladapis, and Archaeolemur, in association with abundant remains of small vertebrates, including bats, tenrecs, carnivorans, rodents, and primates. The Ankilitelo fauna is composed of 34 mammalian species, making it one of the most diverse Holocene assemblages in Madagascar. The fauna comprises the 1 st report of the short-tailed shrew tenrec (Microgale brevicaudata) and the ring-tailed mongoose (Galidia elegans) in southwestern Madagascar. Further, Ankilitelo documents the presence of southwestern species that are rare or that have greatly restricted ranges today, such as Nasolo's shrew tenrec (M. nasoloi), Grandidier's mongoose (Galidictis grandidieri), the narrow-striped mongoose (Mungotictis decemlineata), and the giant jumping rat (Hypogeomys antimena). A simple cause for the unusual small mammal occurrences at Ankilitelo is not obvious. Synergistic interactions between climate change, recent fragmentation and human-initiated degradation of forested habitats, and community-level processes, such as predation, most likely explain the disjunct distributions of the small mammals documented at Ankilitelo. ?? 2009 American Society of Mammalogists.

  9. Geography of spring landbird migration through riparian habitats in southwestern North America

    Science.gov (United States)

    Susan K. Skagen; Jeffrey F. Kelly; Charles van Riper III; Richard L. Hutto; Deborah M. Finch; David J. Krueper; Cynthia P. Melcher

    2005-01-01

    Migration stopover resources, particularly riparian habitats, are critically important to landbirds migrating across the arid southwestern region of North America. To explore the effects of species biogeography and habitat affinity on spring migration patterns, we synthesized existing bird abundance and capture data collected in riparian habitats of the borderlands...

  10. Assessment of grassland ecosystem conditions in the Southwestern United States. Vol. 1

    Science.gov (United States)

    Deborah M. Finch

    2004-01-01

    This report is volume 1 of a two-volume ecological assessment of grassland ecosystems in the Southwestern United States. Broadscale assessments are syntheses of current scientific knowledge, including a description of uncertainties and assumptions, to provide a characterization and comprehensive description of ecological, social, and economic components within an...

  11. Land uplift in the Olkiluoto-Pyhaejaervi area, southwestern Finland, during the last 8000 years

    International Nuclear Information System (INIS)

    Eronen, M.; Glueckert, G.; Rantala, P.; Plassche, O. van de; Plicht, J. van der

    1995-12-01

    Land is rising in relation to sea level several millimetres per year on the coast of southwestern Finland. The aim of the study was to gather information about the land uplift process. Sediment samples were collected from 14 lakes lying at different altitudes in the area between Olkiluoto and Lake Pyhaejaervi in southwestern Finland to study the relative sea-level changes and land uplift. The present-day lakes had once been below the waters of the Baltic, but due to uplift they had been isolated from the sea one after another. The isolation points in the sediments were determined by preliminary diatom analyses. They show the change from brackish to fresh-water conditions, and these horizons were then dated by two radiocarbon assays. (37 refs., 18 figs., 1 tab.)

  12. Nematocarcinus Milne Edwards, 1881 (Crustacea, Decapoda) from Southwestern Atlantic, including the Southern Mid-Atlantic Ridge area.

    Science.gov (United States)

    Cardoso, Irene A; Burukovsky, Rudolf N

    2014-11-26

    The deep sea shrimp genus Nematocarcinus Milne Edwards, 1881 includes 47 species, ten of them have been recorded from the Atlantic Ocean. Herein, material sampled during three scientific projects (REVIZEE Central Fishery project; Campos Basin Deep Sea Environmental Project; Evaluation of Environmental Heterogeneity in the Campos Basin) made in the Southwestern Atlantic, off Brazil, is examined. In addition, material sampled from the South Mid Atlantic Ridge (MAR-ECO Project) was also examined. Four species are recorded for the first time to the southwestern Atlantic Ocean including Mid Atlantic Ridge area: Nematocarcinus faxoni Burukovsky, 2001; N. gracilipes Filhol, 1884; N. rotundus Crosnier & Forest, 1973 and N. tenuipes Spence-Bate, 1888.

  13. Evolution of the Gondwanaland Archaean Shield: ion microprobe zircon dating and southwestern Australia/Wilkes Land, Antartica

    International Nuclear Information System (INIS)

    Lovering, J.F.; Comaford, D.J.

    1979-01-01

    The ion microprobe has been used to study 207 Pb/ 206 Pb ages on 20μm-sized sites on single zircon grains from coastal rocks on either side of the rift in the Gondwanaland Archaean Shield between southwestern Australia and Wilkes Land, Antarctica. The ages on individual sites on zircon grains from a variety of rock types from southwestern Australia show a range from 1600 m.y. to about 3400 m.y., with an inverse dependence on the uranium abundance at each site. Ages of zircons from rocks from the Antartic region show a range from 1600 m.y. to 3100 m.y

  14. The birds of the alien Acacia thickets of the South-western Cape

    African Journals Online (AJOL)

    About 1876, the Cape Superintendent of Plantations began using the Australian Acacia cyanophylla and A. ... Strandveld; but 38 % of all nests recorded in the South-western Cape are in Acacia. S. senegalensis is .... of mixed exotic trees, often including some Acacia but also Eucalyptus, Pinus, Quercus,. Populus and other ...

  15. Description of a new moss frog from the south-western Cape (Anura ...

    African Journals Online (AJOL)

    A new species of moss frog, genus Arthroleptella, is described from the Kleinrivier mountains of the south-western Cape. It is morphologically indistinguishable from the other three species in the area. The four Cape species are allopatric, each has a unique male advertisement call, and preliminary molecular data shows ...

  16. Virus-Vectored Influenza Virus Vaccines

    Science.gov (United States)

    Tripp, Ralph A.; Tompkins, S. Mark

    2014-01-01

    Despite the availability of an inactivated vaccine that has been licensed for >50 years, the influenza virus continues to cause morbidity and mortality worldwide. Constant evolution of circulating influenza virus strains and the emergence of new strains diminishes the effectiveness of annual vaccines that rely on a match with circulating influenza strains. Thus, there is a continued need for new, efficacious vaccines conferring cross-clade protection to avoid the need for biannual reformulation of seasonal influenza vaccines. Recombinant virus-vectored vaccines are an appealing alternative to classical inactivated vaccines because virus vectors enable native expression of influenza antigens, even from virulent influenza viruses, while expressed in the context of the vector that can improve immunogenicity. In addition, a vectored vaccine often enables delivery of the vaccine to sites of inductive immunity such as the respiratory tract enabling protection from influenza virus infection. Moreover, the ability to readily manipulate virus vectors to produce novel influenza vaccines may provide the quickest path toward a universal vaccine protecting against all influenza viruses. This review will discuss experimental virus-vectored vaccines for use in humans, comparing them to licensed vaccines and the hurdles faced for licensure of these next-generation influenza virus vaccines. PMID:25105278

  17. Chromophoric Dissolved Organic Matter in Southwestern Greenland Lakes

    Science.gov (United States)

    Osburn, C. L.; Giles, M. E.; Underwood, G. J. C.

    2014-12-01

    Dissolved organic matter (DOM) is an important property of Arctic lake ecosystems, originating from allochthonous inputs from catchments and autochthonous production by plankton in the water column. Little is known about the quality of DOM in Arctic lakes that lack substantial inputs from catchments and such lakes are abundant in southwestern Greenland. Colored dissolved organic matter (CDOM), the fraction that absorbs ultraviolet (UV) and visible light, is the controlling factor for the optical properties of many surface waters and as well informs on the quality of DOM. We examined the quality of CDOM in 21 lakes in southwestern Greenland, from the ice sheet to the coast, as part of a larger study examining the role of DOM in regulating microbial communities in these lakes. DOM was size fractioned and absorbance and fluorescence was measured on each size fraction, as well as on bulk DOM. The specific ultraviolet absorbance (SUVA) at 254 nm (SUVA254), computed by normalizing absorption (a254) to dissolved organic carbon (DOC) concentration, provided an estimate of the aromatic carbon content of DOM. SUVA values were generally CDOM fluorescence was used to determine the relative abundance of allochthonous and autochthonous DOM in all size fractions. Younger lakes near the ice sheet and lakes near the coast had lower amounts of CDOM and appeared more microbial in quality. However, lakes centrally located between the ice sheet and the coast had the highest CDOM concentrations and exhibited strong humic fluorescence. Overall distinct differences in CDOM quality were observed between lake locations and among DOM size fractions.

  18. Aeolian deposition of Arabia and Somalia sediments on the southwestern continental margin of India

    Digital Repository Service at National Institute of Oceanography (India)

    Chauhan, O.S.

    Kaolinite, smectite, illite and chlorite as major clay minerals and palygorskite and gibbsite in minor quantities have been recorded from the slope of southwestern continental margin of India. Contribution of kaolinite, smectite and gibbsite is from...

  19. Factorial's composition of Lake Abha, Southwestern Saudi Arabia

    International Nuclear Information System (INIS)

    El-Beheiry, M.A.H

    2007-01-01

    The study analyzes the vegetation along Lake Abha in Southwestern Saudi Arabia. A total of 42 plant species were recorded. The annuals decrease and the biennials and perennials increase along the moisture gradient form the terraces to the free-water zone. Six vegetation clusters were identified. The most important are clusters which were identified by the presence of the following species: Phragmites australis, Juncus punctorius, Typha domingensis, Cyperus rotundus, Datura innoxia, Cynodon dactylon, Cornulaca monacantha and Potamogeton nododsus. Each of these communities has been analyzed by classification and ordination techniques and its habitat described and discussed. (author)

  20. Cicada emergence in southwestern riparian forest: Influences of wildfire and vegetation composition

    Science.gov (United States)

    D. Max Smith; Jeffrey Kelly; Deborah M. Finch

    2006-01-01

    Annually emerging cicadas are a numerically and ecologically dominant species in Southwestern riparian forests. Humans have altered disturbance regimes that structure these forests such that floods are less common and wildfires occur more frequently than was historically the case. Impacts of these changes on primary consumers such as riparian cicadas are unknown....

  1. Summary (Songbird ecology in southwestern ponderosa pine forests: A literature review)

    Science.gov (United States)

    William M. Block; Deborah M. Finch; Joseph L. Ganey; William H. Moir

    1997-01-01

    Most ornithological studies in Southwestern ponderosa pine forests have yielded results that are applicable only to the specific location and particular conditions of the study areas (for example, Green 1979 and Hurlbert 1984). In addition, varying interpretation of similar study results by investigators has limited our ability to extend or synthesize research results...

  2. Critical Thinking Dispositions of Undergraduate Nursing Students and Nursing Faculty in Southwestern Nigeria

    Science.gov (United States)

    Ojewole, Foluso O.

    2013-01-01

    The purpose of this quantitative research study was to identify the critical thinking dispositions of undergraduate nursing students and nursing faculty in Southwestern Nigeria. Critical thinking dispositions are required for critical thinking skills. People who have critical thinking disposition exhibit seven traits: truth-seeking,…

  3. Spatial probability models of fire in the desert grasslands of the southwestern USA

    Science.gov (United States)

    Fire is an important driver of ecological processes in semiarid environments; however, the role of fire in desert grasslands of the Southwestern US is controversial and the regional fire distribution is largely unknown. We characterized the spatial distribution of fire in the desert grassland region...

  4. Multiple infections of rodents with zoonotic pathogens in Austria.

    Science.gov (United States)

    Schmidt, Sabrina; Essbauer, Sandra S; Mayer-Scholl, Anne; Poppert, Sven; Schmidt-Chanasit, Jonas; Klempa, Boris; Henning, Klaus; Schares, Gereon; Groschup, Martin H; Spitzenberger, Friederike; Richter, Dania; Heckel, Gerald; Ulrich, Rainer G

    2014-07-01

    Rodents are important reservoirs for a large number of zoonotic pathogens. We examined the occurrence of 11 viral, bacterial, and parasitic agents in rodent populations in Austria, including three different hantaviruses, lymphocytic choriomeningitis virus, orthopox virus, Leptospira spp., Borrelia spp., Rickettsia spp., Bartonella spp., Coxiella burnetii, and Toxoplasma gondii. In 2008, 110 rodents of four species (40 Clethrionomys glareolus, 29 Apodemus flavicollis, 26 Apodemus sylvaticus, and 15 Microtus arvalis) were trapped at two rural sites in Lower Austria. Chest cavity fluid and samples of lung, spleen, kidney, liver, brain, and ear pinna skin were collected. We screened selected tissue samples for hantaviruses, lymphocytic choriomeningitis virus, orthopox viruses, Leptospira, Borrelia, Rickettsia, Bartonella spp., C. burnetii, and T. gondii by RT-PCR/PCR and detected nucleic acids of Tula hantavirus, Leptospira spp., Borrelia afzelii, Rickettsia spp., and different Bartonella species. Serological investigations were performed for hantaviruses, lymphocytic choriomeningitis virus, orthopox viruses, and Rickettsia spp. Here, Dobrava-Belgrade hantavirus-, Tula hantavirus-, lymphocytic choriomeningitis virus-, orthopox virus-, and rickettsia-specific antibodies were demonstrated. Puumala hantavirus, C. burnetii, and T. gondii were neither detected by RT-PCR/PCR nor by serological methods. In addition, multiple infections with up to three pathogens were shown in nine animals of three rodent species from different trapping sites. In conclusion, these results show that rodents in Austria may host multiple zoonotic pathogens. Our observation raises important questions regarding the interactions of different pathogens in the host, the countermeasures of the host's immune system, the impact of the host-pathogen interaction on the fitness of the host, and the spread of infectious agents among wild rodents and from those to other animals or humans.

  5. Buruli Ulcer Disease and Its Association with Land Cover in Southwestern Ghana.

    Directory of Open Access Journals (Sweden)

    Jianyong Wu

    2015-06-01

    Full Text Available Buruli ulcer (BU, one of 17 neglected tropical diseases, is a debilitating skin and soft tissue infection caused by Mycobacterium ulcerans. In tropical Africa, changes in land use and proximity to water have been associated with the disease. This study presents the first analysis of BU at the village level in southwestern Ghana, where prevalence rates are among the highest globally, and explores fine and medium-scale associations with land cover by comparing patterns both within BU clusters and surrounding landscapes.We obtained 339 hospital-confirmed BU cases in southwestern Ghana between 2007 and 2010. The clusters of BU were identified using spatial scan statistics and the percentages of six land cover classes were calculated based on Landsat and Rapid Eye imagery for each of 154 villages/towns. The association between BU prevalence and each land cover class was calculated using negative binomial regression models. We found that older people had a significantly higher risk for BU after considering population age structure. BU cases were positively associated with the higher percentage of water and grassland surrounding each village, but negatively associated with the percent of urban. The results also showed that BU was clustered in areas with high percentage of mining activity, suggesting that water and mining play an important and potentially interactive role in BU occurrence.Our study highlights the importance of multiple land use changes along the Offin River, particularly mining and agriculture, which might be associated with BU disease in southwestern Ghana. Our study is the first to use both medium- and high-resolution imagery to assess these changes. We also show that older populations (≥ 60 y appear to be at higher risk of BU disease than children, once BU data were weighted by population age structures.

  6. Abundance of birds in the oak savannas of the southwestern United States

    Science.gov (United States)

    Wendy D. Jones; Carlton M. Jones; Peter F. Ffolliott; Gerald J. Gottfried

    2005-01-01

    Oak ecosystems of the Southwestern United States are important habitats for a variety of wildlife species. Information is available on the abundance and habitat preferences of some species inhabiting the more densely structured oak woodlands, but little information is available on these topics for the comparatively open oak savannas. Studies are underway to alleviate...

  7. Emerging highly pathogenic H5 avian influenza viruses in France during winter 2015/16: phylogenetic analyses and markers for zoonotic potential.

    Science.gov (United States)

    Briand, François-Xavier; Schmitz, Audrey; Ogor, Katell; Le Prioux, Aurélie; Guillou-Cloarec, Cécile; Guillemoto, Carole; Allée, Chantal; Le Bras, Marie-Odile; Hirchaud, Edouard; Quenault, Hélène; Touzain, Fabrice; Cherbonnel-Pansart, Martine; Lemaitre, Evelyne; Courtillon, Céline; Gares, Hélène; Daniel, Patrick; Fediaevsky, Alexandre; Massin, Pascale; Blanchard, Yannick; Eterradossi, Nicolas; van der Werf, Sylvie; Jestin, Véronique; Niqueux, Eric

    2017-03-02

    Several new highly pathogenic (HP) H5 avian influenza virus (AIV) have been detected in poultry farms from south-western France since November 2015, among which an HP H5N1. The zoonotic potential and origin of these AIVs immediately became matters of concern. One virus of each subtype H5N1 (150169a), H5N2 (150233) and H5N9 (150236) was characterised. All proved highly pathogenic for poultry as demonstrated molecularly by the presence of a polybasic cleavage site in their HA protein - with a sequence (HQRRKR/GLF) previously unknown among avian H5 HPAI viruses - or experimentally by the in vivo demonstration of an intravenous pathogenicity index of 2.9 for the H5N1 HP isolate. Phylogenetic analyses based on the full genomes obtained by NGS confirmed that the eight viral segments of the three isolates were all part of avian Eurasian phylogenetic lineage but differed from the Gs/Gd/1/96-like lineage. The study of the genetic characteristics at specific amino acid positions relevant for modulating the adaptation to and the virulence for mammals showed that presently, these viruses possess most molecular features characteristic of AIV and lack some major characteristics required for efficient respiratory transmission to or between humans. The three isolates are therefore predicted to have no significant pandemic potential. This article is copyright of The Authors, 2017.

  8. Southwestern willow flycatchers (Empidonax traillii extimus) in a grazed landscape: factors influencing brood parasitism

    Science.gov (United States)

    Katherine M. Brodhead; Scott H. Stoleson; Deborah M. Finch

    2007-01-01

    Brood parasitism by Brown-headed Cowbirds (Molothrus ater; hereafter "cowbirds") is an important factor contributing to the endangered status of the Southwestern Willow Flycatcher (Empidonax traillii extimus, hereafter "flycatcher"). We report on factors that influence brood parasitism on the flycatcher using...

  9. Antibody Detection to Feline Immunodeficiency virus (FIV in stray cats in Ahvaz, southwestern Iran

    Directory of Open Access Journals (Sweden)

    Mosallanejad, B.

    2010-01-01

    Full Text Available The present study was performed to determine the prevalence of FIV in stray cat's population of Ahvaz different area. Serum samples were collected from 90 cats from 2005 to 2007. The studied cats were divided into two age groups (3 years and based on clinical signs (such as lymphadenopathy, periodontal diseases, gingivitis, abscess and cashecsi into two groups also. The results were analyzed using Fischer's exact test and Chi-square analysis. Prevalence to FIV antibodies in these cats was 15.55% (14 of 90 by means of ELISA Test Kit, indicating that this virus is present in the ecosystem. The infection had more prevalence in cats above 3 years (78.6%; 11 of 14 compared with cats less than 3 years (21.4%; 3 of 14. Statistical analysis showed significant difference between different age groups (P0.05. Three out of 12 cases (25% which had clinical signs and 11 out of 78 cases (14.1% which hadn’t clinical signs were seropositive. There was no significant difference between the two groups also (P>0.05. This study showed that FIV exist among cat's population of Ahvaz area and separation of companion and stray cats is very important for prevention of disease transmission to companion cats.

  10. Reservoir-driven heterogeneous distribution of recorded human Puumala virus cases in South-West Germany

    Czech Academy of Sciences Publication Activity Database

    Drewes, S.; Turni, H.; Rosenfeld, U. M.; Obiegala, A.; Straková, Petra; Imholt, C.; Glatthaar, E.; Dressel, K.; Pfeffer, M.; Jacob, J.; Wagner-Wiening, C.; Ulrich, R. G.

    2017-01-01

    Roč. 64, č. 5 (2017), s. 381-390 ISSN 1863-1959 EU Projects: European Commission(XE) 261504 - EDENEXT Institutional support: RVO:68081766 Keywords : Hantavirus * endemic region * incidence * bank vole * prevalence * Germany Subject RIV: EE - Microbiology, Virology OBOR OECD: Infectious Diseases Impact factor: 2.323, year: 2016

  11. Characterization, Ecological Distribution, and Population Dynamics of Saccharomyces Sensu Stricto Killer Yeasts in the Spontaneous Grape Must Fermentations of Southwestern Spain

    Science.gov (United States)

    Maqueda, Matilde; Zamora, Emiliano; Álvarez, María L.

    2012-01-01

    Killer yeasts secrete protein toxins that are lethal to sensitive strains of the same or related yeast species. Among the four types of Saccharomyces killer yeasts already described (K1, K2, K28, and Klus), we found K2 and Klus killer yeasts in spontaneous wine fermentations from southwestern Spain. Both phenotypes were encoded by medium-size double-stranded RNA (dsRNA) viruses, Saccharomyces cerevisiae virus (ScV)-M2 and ScV-Mlus, whose genome sizes ranged from 1.3 to 1.75 kb and from 2.1 to 2.3 kb, respectively. The K2 yeasts were found in all the wine-producing subareas for all the vintages analyzed, while the Klus yeasts were found in the warmer subareas and mostly in the warmer ripening/harvest seasons. The middle-size isotypes of the M2 dsRNA were the most frequent among K2 yeasts, probably because they encoded the most intense K2 killer phenotype. However, the smallest isotype of the Mlus dsRNA was the most frequent for Klus yeasts, although it encoded the least intense Klus killer phenotype. The killer yeasts were present in most (59.5%) spontaneous fermentations. Most were K2, with Klus being the minority. The proportion of killer yeasts increased during fermentation, while the proportion of sensitive yeasts decreased. The fermentation speed, malic acid, and wine organoleptic quality decreased in those fermentations where the killer yeasts replaced at least 15% of a dominant population of sensitive yeasts, while volatile acidity and lactic acid increased, and the amount of bacteria in the tumultuous and the end fermentation stages also increased in an unusual way. PMID:22101056

  12. Southwestern Institute of Physics: Annual Report 1998

    International Nuclear Information System (INIS)

    1999-10-01

    The main achievements of controlled nuclear fusion research are presented for Southwestern Institute of Physics in 1998 year. With the establishment and operation of two auxiliary heating systems (NBI, ICRH), the HL-1M Tokamak is equipped with main auxiliary heating and current driving systems such as NBI, ECRH, ICRH and LHCD etc. . In addition, a variety of advanced fueling system, i.e. , multi-shot pellet and supersonic molecular beam injection, the first wall processing technologies of boronization, siliconization and lithiumization as well as more than 20 diagnostic facilities with partial space-time resolution capability have been established on the device. The construction of a larger Tokamak with divertors, the HL-2A, and its complementary systems are being carried out

  13. Long-term trends in restoration and associated land treatments in the southwestern United States

    Science.gov (United States)

    Copeland, Stella M.; Munson, Seth M.; Pilliod, David S.; Welty, Justin L.; Bradford, John B.; Butterfield, Bradley J.

    2018-01-01

    Restoration treatments, such as revegetation with seeding or invasive species removal, have been applied on U.S. public lands for decades. Temporal trends in these management actions have not been extensively summarized previously, particularly in the southwestern United States where invasive plant species, drought, and fire have altered dryland ecosystems. We assessed long-term (1940–2010) trends in restoration using approximately 4,000 vegetation treatments conducted on Bureau of Land Management lands across the southwestern United States. We found that since 1940, the proportions of seeding and vegetation/soil manipulation (e.g. vegetation removal or plowing) treatments have declined, while the proportions of prescribed burn and invasive species treatments have increased. Treatments in pinyon-juniper and big sagebrush communities declined in comparison to treatments in desert scrub, creosote bush, and riparian woodland communities. Restoration-focused treatment objectives increased relative to resource extraction objectives. Species richness and proportion of native species used in seeding treatments also increased. Inflation-adjusted costs per area rose 750% for vegetation/soil manipulation, 600% for seeding, and 400% for prescribed burn treatments in the decades from 1981 to 2010. Seeding treatments were implemented in warmer and drier years when compared to the climate conditions of the entire study period and warmer and wetter years relative to several years before and after the treatment. These results suggest that treatments over a 70-year period on public lands in the southwestern United States are shifting toward restoration practices that are increasingly large, expensive, and related to fire and invasive species control.

  14. Stelletta hajdui, a new species from the southwestern Atlantic (Porifera, Choristida, Ancorinidae)

    NARCIS (Netherlands)

    Lerner, Cléa; Mothes, Beatriz

    1999-01-01

    A new species of Stelletta from the southwestern Atlantic, Stelletta hajdui sp.n. is described from the slope off Rio Grande do Sul State coast, Brazil (32°24'S, 50°15'W) (Fig.1). The material studied was dredged up at the depth of 200m by the R/V Atlântico Sul, during “Projeto Talude” run by

  15. Variability and trends in dry day frequency and dry event length in the southwestern United States

    Science.gov (United States)

    McCabe, Gregory J.; Legates, David R.; Lins, Harry F.

    2010-01-01

    Daily precipitation from 22 National Weather Service first-order weather stations in the southwestern United States for water years 1951 through 2006 are used to examine variability and trends in the frequency of dry days and dry event length. Dry events with minimum thresholds of 10 and 20 consecutive days of precipitation with less than 2.54 mm are analyzed. For water years and cool seasons (October through March), most sites indicate negative trends in dry event length (i.e., dry event durations are becoming shorter). For the warm season (April through September), most sites also indicate negative trends; however, more sites indicate positive trends in dry event length for the warm season than for water years or cool seasons. The larger number of sites indicating positive trends in dry event length during the warm season is due to a series of dry warm seasons near the end of the 20th century and the beginning of the 21st century. Overall, a large portion of the variability in dry event length is attributable to variability of the El Niño–Southern Oscillation, especially for water years and cool seasons. Our results are consistent with analyses of trends in discharge for sites in the southwestern United States, an increased frequency in El Niño events, and positive trends in precipitation in the southwestern United States.

  16. Oil and Gas Development in Southwestern Wyoming - Energy Data and Services for the Wyoming Landscape Conservation Initiative (WLCI)

    Science.gov (United States)

    Biewick, Laura

    2009-01-01

    The purpose of this report is to explore current oil and gas energy development in the area encompassing the Wyoming Landscape Conservation Initiative. The Wyoming Landscape Conservation Initiative is a long-term science-based effort to ensure southwestern Wyoming's wildlife and habitat remain viable in areas facing development pressure. Wyoming encompasses some of the highest quality wildlife habitats in the Intermountain West. At the same time, this region is an important source of natural gas. Using Geographic Information System technology, energy data pertinent to the conservation decision-making process have been assembled to show historical oil and gas exploration and production in southwestern Wyoming. In addition to historical data, estimates of undiscovered oil and gas are included from the 2002 U.S. Geological Survey National Assessment of Oil and Gas in the Southwestern Wyoming Province. This report is meant to facilitate the integration of existing data with new knowledge and technologies to analyze energy resources development and to assist in habitat conservation planning. The well and assessment data can be accessed and shared among many different clients including, but not limited to, an online web-service for scientists and resource managers engaged in the Initiative.

  17. How do we know how much groundwater is stored in south-western Cape mountains?

    CSIR Research Space (South Africa)

    Midgley, JJ

    2001-07-01

    Full Text Available Isotopes of water (D, O-18) in rain and streams were used to obtain an estimate of the amount of ground water in the south-western Cape Mountains. It was assumed that the groundwater reservoir is well-mixed and that the water isotope signals...

  18. Stone heat treatment in the Early Mesolithic of southwestern Germany: Interpretation and identification.

    Directory of Open Access Journals (Sweden)

    Patrick Schmidt

    Full Text Available The Early Mesolithic of southwestern Germany, the so-called Beuronian (9600-7100 BC, is a period of important transformations in the way people lived, in their subsistence and in the stone tools they produced. One of the perhaps most spectacular re-inventions of that time is heat treatment of stones prior to their manufacture into tools. Although heat treatment has been understood as one of the defining characteristics of the Beuronian of southwestern Germany, and although its existence has been known for almost 30 years now, relatively few systematic studies on it are available. In this paper, we present such a study, aiming to shed light on two questions: (1 what technique and heating parameters were used in the Beuronian and (2 how reliable are the macroscopic proxies traditionally used to identify heat treatment in this context? We investigate these questions using a non-destructive archaeometric technique for measuring past heating temperatures of heat-treated stones and a quantitative surface roughness analysis aiming to understand the relations between surface aspect and heat treatment. These methods are applied to 46 Jurassic chert artefacts from the site Helga-Abri located in the Swabian Alb region of southwestern Germany. Our results document that an opportunistic low-investment procedure was used to heat stone, probably relying on the use of the above-ground part of regular camp-fires. We also found that the traditionally used macroscopic criteria, such as colour and surface gloss, cannot be unambiguously used to identify heat treatment in assemblages made from Jurassic chert. These findings have important implications for our understanding of the Beuronian lithic chaîne opératoire in terms of the investment in time and resources necessary, and for the refinement of archaeological techniques used to identify heat treatment in the Mesolithic of the Swabian Alb.

  19. Stone heat treatment in the Early Mesolithic of southwestern Germany: Interpretation and identification.

    Science.gov (United States)

    Schmidt, Patrick; Spinelli Sanchez, Océane; Kind, Claus-Joachim

    2017-01-01

    The Early Mesolithic of southwestern Germany, the so-called Beuronian (9600-7100 BC), is a period of important transformations in the way people lived, in their subsistence and in the stone tools they produced. One of the perhaps most spectacular re-inventions of that time is heat treatment of stones prior to their manufacture into tools. Although heat treatment has been understood as one of the defining characteristics of the Beuronian of southwestern Germany, and although its existence has been known for almost 30 years now, relatively few systematic studies on it are available. In this paper, we present such a study, aiming to shed light on two questions: (1) what technique and heating parameters were used in the Beuronian and (2) how reliable are the macroscopic proxies traditionally used to identify heat treatment in this context? We investigate these questions using a non-destructive archaeometric technique for measuring past heating temperatures of heat-treated stones and a quantitative surface roughness analysis aiming to understand the relations between surface aspect and heat treatment. These methods are applied to 46 Jurassic chert artefacts from the site Helga-Abri located in the Swabian Alb region of southwestern Germany. Our results document that an opportunistic low-investment procedure was used to heat stone, probably relying on the use of the above-ground part of regular camp-fires. We also found that the traditionally used macroscopic criteria, such as colour and surface gloss, cannot be unambiguously used to identify heat treatment in assemblages made from Jurassic chert. These findings have important implications for our understanding of the Beuronian lithic chaîne opératoire in terms of the investment in time and resources necessary, and for the refinement of archaeological techniques used to identify heat treatment in the Mesolithic of the Swabian Alb.

  20. The Cambrian-Ordovician rocks of Sonora, Mexico, and southern Arizona, southwestern margin of North America (Laurentia): chapter 35

    Science.gov (United States)

    Page, William R.; Harris, Alta C.; Repetski, John E.; Derby, James R.; Fritz, R.D.; Longacre, S.A.; Morgan, W.A.; Sternbach, C.A.

    2013-01-01

    Cambrian and Ordovician shelf, platform, and basin rocks are present in Sonora, Mexico, and southern Arizona and were deposited on the southwestern continental margin of North America (Laurentia). Cambrian and Ordovician rocks in Sonora, Mexico, are mostly exposed in scattered outcrops in the northern half of the state. Their discontinuous nature results from extensive Quaternary and Tertiary surficial cover, from Tertiary and Mesozoic granitic batholiths in western Sonora, and from widespread Tertiary volcanic deposits in the Sierra Madre Occidental in eastern Sonora. Cambrian and Ordovician shelf rocks were deposited as part of the the southern miogeocline on the southwestern continental margin of North America.

  1. Disrupted bone metabolism in contaminant-exposed white storks (Ciconia ciconia) in southwestern Spain

    International Nuclear Information System (INIS)

    Smits, Judit E.; Bortolotti, Gary R.; Baos, Raquel; Jovani, Roger; Tella, Jose L.; Hoffmann, Walter E.

    2007-01-01

    In 1998, the Aznalcollar mine tailings dyke in southwestern Spain broke, flooding the Agrio-Guadiamar river system with acid tailings up to the borders of one of the largest breeding colonies of white storks in the western Palearctic, Dehesa de Abajo. Over the following years, a high proportion of nestlings developed leg defects not seen before the spill, prompting this study. Nestlings with deformed legs had significantly lower plasma phosphorous (P) and higher Ca:P ratios than non-deformed cohorts in the first two years, but in the third year, when more, younger birds were studied, plasma P ranged from much higher to much lower in the affected colony compared with reference birds. Coefficients of variation for phosphorous were 19% and 60%, in reference and contaminated colonies, respectively. Storks from the contaminated colony were unable to control P levels and Ca:P ratios within the narrow limits necessary for normal bone development. - Since a large mine tailings spill near a stork colony in southwestern Spain, nestlings had leg deformities and could not control serum phosphorous levels and Ca:P ratios

  2. Disrupted bone metabolism in contaminant-exposed white storks (Ciconia ciconia) in southwestern Spain

    Energy Technology Data Exchange (ETDEWEB)

    Smits, Judit E. [Department of Veterinary Pathology, University of Saskatchewan, 52 Campus Drive, Saskatoon, SK S7N 5B4 (Canada)]. E-mail: judit.smits@usask.ca; Bortolotti, Gary R. [Department of Biology, University of Saskatchewan, Saskatoon, 52 Campus Drive, SK S7N 5B4 (Canada)]. E-mail: gary.bortolotti@usask.ca; Baos, Raquel [Estacion Biologica de Donana, C.S.I.C., 41013 Sevilla (Spain)]. E-mail: raquel@ebd.csic.es; Jovani, Roger [Estacion Biologica de Donana, C.S.I.C., 41013 Sevilla (Spain); Tella, Jose L. [Estacion Biologica de Donana, C.S.I.C., 41013 Sevilla (Spain); Hoffmann, Walter E. [University of Illinois, College of Veterinary Medicine, Champagne-Urbana, IL (United States)]. E-mail: wally@uiuc.edu

    2007-01-15

    In 1998, the Aznalcollar mine tailings dyke in southwestern Spain broke, flooding the Agrio-Guadiamar river system with acid tailings up to the borders of one of the largest breeding colonies of white storks in the western Palearctic, Dehesa de Abajo. Over the following years, a high proportion of nestlings developed leg defects not seen before the spill, prompting this study. Nestlings with deformed legs had significantly lower plasma phosphorous (P) and higher Ca:P ratios than non-deformed cohorts in the first two years, but in the third year, when more, younger birds were studied, plasma P ranged from much higher to much lower in the affected colony compared with reference birds. Coefficients of variation for phosphorous were 19% and 60%, in reference and contaminated colonies, respectively. Storks from the contaminated colony were unable to control P levels and Ca:P ratios within the narrow limits necessary for normal bone development. - Since a large mine tailings spill near a stork colony in southwestern Spain, nestlings had leg deformities and could not control serum phosphorous levels and Ca:P ratios.

  3. Microfossils in the Ordovician erratic boulders from South-western Finland

    Directory of Open Access Journals (Sweden)

    Nõlvak, J.

    1995-12-01

    Full Text Available Chitinozoans, ostracods and acritarchs found in four glacially transported limestone boulders from the south-western coast of Finland have been studied in order to test the usefulness of these microfossil groups in age determinations. Also rare specimens of conodonts, inarticulated brachiopods and foraminifers were found. Baltic limestone (or Östersjö limestone was the most problematic, because only fossils with calcitic or phosphatic shells are preserved. It is concluded that the boulders identified correlate with the Uhaku and Rakvere stages of the Middle Ordovician.

  4. Antibody detection of feline infectious peritonitis virus (FIPV in sera of companion cats in Ahvaz, south west of Iran

    Directory of Open Access Journals (Sweden)

    Seyfiabad Shapouri, M.R.

    2012-06-01

    Full Text Available Feline infectious peritonitis virus (FIPV is ubiquitous in domestic cats, especially in young cats and multi-cat environments. In the present study, a total of 248 companion cats of different ages were examined for serum antibody detection of FIPV by immunochromatography assay. The cats were selected from those referring to Veterinary Hospital of Ahvaz University, southwestern Iran from December 2006 to June 2009. Classification was made by age, sex, breed, region and season. The studied cats were divided based on age into three groups ( 3 years and based on area into five regions (north, east, west, south and central. The results were analyzed by using Chi-square analysis and Fischer's exact test. Seventeen of 248 serum samples (6.85% had antibody against feline infectious peritonitis virus. Prevalence was significantly higher in young kittens less than 6 months (9.72%; 7 out of 72 and mean-age cats 6 months – 3 years (9.28%; 9 out of 97 compared with above 3 years (1.27%; 1 out of 79 (P0.05. It is necessary to control cat population in these area particular young cats to reduce risk of infection transmission between them.

  5. Vulnerability of field crops to midcentury temperature changes and yield effects in the Southwestern USA

    Science.gov (United States)

    Increased temperatures in the Southwestern United States will impact future crop production via multiple pathways. We used four methods to provide an illustrative analysis of midcentury temperature impacts to eight field crops. By midcentury, cropland area thermally suitable for maize cultivation is...

  6. Nairobi sheep disease virus/Ganjam virus.

    Science.gov (United States)

    M D, Baron; B, Holzer

    2015-08-01

    Nairobi sheep disease virus (NSDV) is a tick-borne virus which causes a severe disease in sheep and goats, and has been responsible for several outbreaks of disease in East Africa. The virus is also found in the Indian subcontinent, where it is known as Ganjam virus. The virus only spreads through the feeding of competent infected ticks, and is therefore limited in its geographic distribution by the distribution of those ticks, Rhipicephalus appendiculata in Africa and Haemaphysalis intermedia in India. Animals bred in endemic areas do not normally develop disease, and the impact is therefore primarily on animals being moved for trade or breeding purposes. The disease caused by NSDV has similarities to several other ruminant diseases, and laboratory diagnosis is necessary for confirmation. There are published methods for diagnosis based on polymerase chain reaction, for virus growth in cell culture and for other simple diagnostic tests, though none has been commercialised. There is no established vaccine against NSDV, although cell-culture attenuated strains have been developed which show promise and could be put into field trials if it were deemed necessary. The virus is closely related to Crimean-Congo haemorrhagic fever virus, and studies on NSDV may therefore be useful in understanding this important human pathogen.

  7. Microbial inputs in coffee (Coffea arabica L.) production systems, southwestern Ethiopia

    OpenAIRE

    Muleta, Diriba

    2007-01-01

    Arabica coffee is the key cash crop and top mainstay of the Ethiopian economy and requires sustainable production methods. Southwestern natural forests, the site of this study, are believed to be the centre of origin and diversity for Coffea arabica and still harbour wild Arabica coffee that may serve as an important gene pool for future breeding. Cost reductions, sustainability and quality improvement are now the major priorities in coffee production systems and require organic growing of co...

  8. Changes in Gambel oak densities in southwestern ponderosa pine forests since Euro-American settlement

    Science.gov (United States)

    Scott R. Abella; Peter Z. Fulé

    2008-01-01

    Densities of small-diameter ponderosa pine (Pinus ponderosa) trees have increased in southwestern ponderosa pine forests during a period of fire exclusion since Euro-American settlement in the late 1800s. However, less well known are potential changes in Gambel oak (Quercus gambelii) densities during this period in these forests....

  9. Coral assemblages are structured along a turbidity gradient on the Southwestern Gulf of Mexico, Veracruz

    Science.gov (United States)

    Jordán-Garza, A. G.; González-Gándara, C.; Salas-Pérez, J. J.; Morales-Barragan, A. M.

    2017-04-01

    Corals on the reef corridor of the southwestern Gulf of Mexico have evolved on a terrigenous shallow continental shelf under the influence of several natural river systems. As a result, water turbidity on these reefs can be high, with visibility as low as turbidity and chlorophyll-a, the coral species composition and environmental variables were analyzed for the three main reef systems of the reef corridor of the southwestern Gulf of Mexico. Completeness of the data set was assessed using species accumulation curves and non-parametric estimators of species richness. Differences in coral assemblages' composition between the reef systems were investigated using univariate (ANOVA) and multivariate (nMDS, ANOSIM, SIMPER) analyses and the relationship between the assemblages and environmental data was assessed using a forward selection process in canonical correspondence analysis (CCA) to eliminate non-significant environmental variables. The northern and central Veracruz reef systems share a similar number of coral species (p=0.78 mult. comp.) and both showed higher species richness than the southern system (pturbidity and productivity were significant on the final CCA configuration, which showed a gradient of increasing turbidity from north to south. Reef geomorphology and the effect of turbidity help explain differences in coral assemblages' composition. More studies are necessary to establish if turbidity could function as a refuge for future environmental stress. Each Veracruz reef system is at the same time unique and shares a pool of coral species. To protect these ecosystems it is necessary to effectively manage water quality and consider coral diversity on the reef corridor of the southwestern Gulf of Mexico.

  10. Detección del virus de la leucosis bovina en ganado criollo colombiano mediante PCR-anidado Bovine leukemia virus detection in Creole Colombian breeds using nested-PCR

    Directory of Open Access Journals (Sweden)

    Darwin Yovanny Hernández-Herrera

    2011-12-01

    found in BON, SM and RS. For the introduced breeds the presence of virus was 83.3% for H and 6.7% for B. The average of presence for Creole bovine breeds was lower than introduced breeds. A high and significant dependence was found between the presence of BLV with breed, sex and sampling places. The presence was lower in males than in females and in the northern part than the southwestern and central areas of the country.

  11. Genetic diversity of Ascaris in southwestern Uganda

    DEFF Research Database (Denmark)

    Betson, Martha; Nejsum, Peter; Llewellyn-Hughes, Julia

    2012-01-01

    . Microsatellite analysis using eight loci provided evidence for high gene flow between worm populations from the two villages but comparing these worms with others obtained in a prior study on Unguja, Zanzibar, confirmed little genetic exchange and mixing of worm populations between the two areas. By adding......Despite the common occurrence of ascariasis in southwestern Uganda, helminth control in the region has been limited. To gain further insights into the genetic diversity of Ascaris in this area, a parasitological survey in mothers (n=41) and children (n=74) living in two villages, Habutobere...... and Musezero, was carried out. Adult Ascaris worms were collected from infected individuals by chemo-expulsion using pyrantel pamoate treatment. Genetic diversity within these worms was assessed by inspection of DNA sequence variation in a mitochondrial marker and length polymorphism at microsatellite loci...

  12. DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

    Directory of Open Access Journals (Sweden)

    Július Rozák

    2013-02-01

    Full Text Available The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen and molecular diagnostic by mRT-PCR were applied. Five samples with Plum pox virus were infected. The two samples positive for Prunus necrotic ringspot virus and one sample for Prunus dwarf virus were confirmed. The two samples were found to be infected with two viruses Prunus necrotic ringspot virus and Prunus dwarf virus. This work focuses on two techniques, their application to the diagnosis of stone fruit viruses and their routinely used for sanitary and certification programmes.

  13. Ecology and management of oak woodlands and savannas in the southwestern Borderlands Region

    Science.gov (United States)

    Gerald J. Gottfried; Peter F. Ffolliott

    2013-01-01

    Management of the Madrean oak woodlands and the less dense and ecologically different oak savannas must be based on sound ecological information. However, relatively little is known about the Madrean oak ecosystems in spite of the fact that they cover about 80,000 km2 in the southwestern United States and northern Mexico. Emory oak (Quercus emoryi), the dominant tree...

  14. Stream channel designs for riparian and wet meadow rangelands in the southwestern United States

    Science.gov (United States)

    Roy Jemison; Daniel G. Neary

    2000-01-01

    Inappropriate land uses have degraded wetland and riparian ecosystems throughout the Southwestern United States. In 1996, the Cibola National Forest in New Mexico implemented a channel relocation project, as part of a road improvement project, to determine the feasibility of restoring wet meadow and riparian ecosystems degraded by inappropriately located roads and...

  15. Avian nest box selection and nest success in burned and unburned southwestern riparian forests

    Science.gov (United States)

    D. Max Smith; Jeffrey F. Kelly; Deborah M. Finch

    2007-01-01

    Riparian forest communities in the southwestern United States were historically structured by a disturbance regime of annual flooding. In recent decades, however, frequency of flooding has decreased and frequency of wildfires has increased. Riparian forests provide important breeding habitat for a large variety of bird species, and the effects of this altered...

  16. Radiometric ages of some igneous rocks from the southern and southwestern coalfields of New South Wales

    International Nuclear Information System (INIS)

    Carr, P.F.; Facer, R.A.

    1980-01-01

    Samples from six igneous rock units of the Southern and Southwestern Coalfields (Sydney Basin) of New South Wales have been dated using the K-Ar radiometric technique. The following ages were determined: a dolerite from Towradgi, 243 +- 10 MY; a dolerite from a diamond-drill hole at Sutton Forest, 202 +- 8 MY; the Bong Bong Basalt, 190 +- 8 MY; the Good Dog Lamprophyre, 101 +- 4 MY; a teschenite from South Bulli coal mine 74.0 +- 3.6 MY; and a dolerite from Robertson, 63.8 +- 3.2 MY. Combination of these new ages wth previously-published ages indicates that igneous activity in the Southern and Southwestern Coalfields occurred during four discrete periods of time - Middle-to-Late Permian; Late Triassic to Early Jurassic; mid-Cretaceous (only the Good Dog Lamprophyre has yielded such an age); and latest Cretaceous to Late Oligocene

  17. Disposal and reclamation of southwestern coal and uranium wastes

    International Nuclear Information System (INIS)

    Wewerka, E.M.

    1979-01-01

    The types of solid wastes and effluents produced by the southwestern coal and uranium mining and milling industries are considered, and the current methods for the disposal and reclamation of these materials discussed. The major means of disposing of the solid wastes from both industries is by land fill or in some instances ponding. Sludges or aqueous wastes are normally discharged into settling and evaporative ponds. Basic reclamation measures for nearly all coal and uranium waste disposal sites include solids stabilization, compacting, grading, soil preparation, and revegetation. Impermeable liners and caps are beginning to be applied to disposal sites for some of the more harmful coal and uranium waste materials

  18. Mapping the Geothermal System Using AMT and MT in the Mapamyum (QP Field, Lake Manasarovar, Southwestern Tibet

    Directory of Open Access Journals (Sweden)

    Lanfang He

    2016-10-01

    Full Text Available Southwestern Tibet plays a crucial role in the protection of the ecological environment and biodiversity of Southern Asia but lacks energy in terms of both power and fuel. The widely distributed geothermal resources in this region could be considered as potential alternative sources of power and heat. However, most of the known geothermal fields in Southwestern Tibet are poorly prospected and currently almost no geothermal energy is exploited. Here we present a case study mapping the Mapamyum (QP geothermal field of Southwestern Tibet using audio magnetotellurics (AMT and magnetotellurics (MT methods. AMT in the frequency range 11.5–11,500 Hz was used to map the upper part of this geothermal reservoir to a depth of 1000 m, and MT in the frequency range 0.001–320 Hz was used to map the heat source, thermal fluid path, and lower part of the geothermal reservoir to a depth greater than 1000 m. Data from 1300 MT and 680 AMT stations were acquired around the geothermal field. Bostick conversion with electromagnetic array profiling (EMAP filtering and nonlinear conjugate gradient inversion (NLCGI was used for data inversion. The AMT and MT results presented here elucidate the geoelectric structure of the QP geothermal field, and provide a background for understanding the reservoir, the thermal fluid path, and the heat source of the geothermal system. We identified a low resistivity anomaly characterized by resistivity in the range of 1–8 Ω∙m at a depth greater than 7 km. This feature was interpreted as a potential reflection of the partially melted magma in the upper crust, which might correlate to mantle upwelling along the Karakorum fault. It is likely that the magma is the heat source of the QP geothermal system, and potentially provides new geophysical evidence to understand the occurrence of the partially melted magmas in the upper crust in Southwestern Tibet.

  19. Reproductive and population parameters of spiny dogfish Squalus acanthias in the south-western Atlantic Ocean.

    Science.gov (United States)

    Colonello, J H; Cortés, F; Belleggia, M; Massa, A M

    2016-05-01

    The objective of this study was to estimate reproductive and population parameters of the spiny dogfish Squalus acanthias for the south-western Atlantic Ocean. In total, 2714 specimens (1616 males and 1098 females) were collected from surveys carried out using research vessels. Males ranged from 225 to 861 mm total length (LT ) and females from 235 to 925 mm LT . The size at maturity of females (651 mm) was significantly greater than that of males (565 mm). The maximum proportion of mature individuals (Pmax ) of the gestation ogive was 156 mm). The temporal and spatial co-occurrence of non-gravid adult females at different stages of ovarian development, as well as gravid females at all embryonic development stages would indicate that the female reproductive cycle in the south-western Atlantic Ocean is asynchronous. The results indicate that S. acanthias is susceptible to fishing pressure on account of its length at maturity, extended reproductive cycles and low fecundity. © 2016 The Fisheries Society of the British Isles.

  20. Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV, Bovine Leukemia Virus (BLV, Human Papilloma Virus (HPV, and Epstein–Barr Virus (EBV

    Directory of Open Access Journals (Sweden)

    James S. Lawson

    2018-01-01

    Full Text Available BackgroundAlthough the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV, bovine leukemia virus (BLV, human papilloma viruses (HPVs, and Epstein–Barr virus (EBV-also known as human herpes virus type 4. Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence.The evidenceMMTV and human breast cancer—the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer—the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer—the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer—the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal.ConclusionThe influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

  1. Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV), Bovine Leukemia Virus (BLV), Human Papilloma Virus (HPV), and Epstein-Barr Virus (EBV).

    Science.gov (United States)

    Lawson, James S; Salmons, Brian; Glenn, Wendy K

    2018-01-01

    Although the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV), bovine leukemia virus (BLV), human papilloma viruses (HPVs), and Epstein-Barr virus (EBV-also known as human herpes virus type 4). Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence. MMTV and human breast cancer-the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer-the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer-the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer-the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal. The influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

  2. Seismic fabric and 3-D structure of the southwestern intracontinental Palmyride fold belt, Syria

    Energy Technology Data Exchange (ETDEWEB)

    Chaimov, T.A.; Barazangi, M. (Cornell Univ., Ithaca, NY (United States)); Al-Saad, D.; Sawaf, T.; Khaddour, M. (Ministry of Petroleum and Mineral Resources, Damascus (Syrian Arab Republic))

    1993-12-01

    The Palmyride fold belt, a 400 x 100 km transpressive belt in central Syria that is the northeastern arm of the Syrian arc, is the result of late Mesozoic and Cenozoic inversion of a late Paleozoic and Mesozoic, northeast-trending, linear intracontinental basin located within the northern Arabian platform. The southwestern Palmyrides, near the Dead Sea transform fault system and the Anti-Lebanon mountains, are characterized by short wavelength (5--10 km) en echelon folds separated by small intermontane basins that developed mainly in the Neogene to Holocene. A new three-dimensional data cube, 60 x 70 x 10 km, generated on a Landmark Graphics workstation and based on approximately 700 km of two-dimensional seismic reflection profiles, elucidates the structure of the upper 10 km of the crust in the southwestern Palmyrides. Visualization of the subsurface structure, which is represented by a prominent Upper Cretaceous reflection surface in the data cube, is augmented by topographical and Bouguer gravity data of the same region. Preexisting discontinuities, probable normal fault relicts of the Mesozoic Palmyride rift, likely controlled the development of individual Neogene thrusts. The new subsurface image shows important structural features not identified in outcrop. Short, west-northwest-trending transcurrent (or transfer) faults like the short, en echelon northeast-trending thrust faults and blind thrusts of the Palmyrides. A pervasive regional decollment is not observed, even though Triassic evaporites host local detachments. Unlike topographic relief, which only roughly resembles subsurface structures, the Bouguer gravity signature of the southwestern Palmyrides closely mimics underlying shallow geologic structures both on a large ([approximately]50 km wavelength) and a small ([approximately]5--10 km wavelength) scale. The structural analysis and many other recent studies of the region indicate minor right-lateral shear coupled with compression in the Palmyrides.

  3. Comparative phytosociological investigation of subalpine alder thickets in southwestern Alaska and the North Pacific

    Science.gov (United States)

    Talbot, Stephen S.; Talbot, Sandra L.; Daniëls, F. J. A.

    2005-01-01

    We present the first vegetation analysis of subalpine alder (Alnus viridis) thickets in southwestern Alaska. The data are primarily from mesic, hilly and mountainous sites ranging from the westernmost tip of the Alaska Peninsula to the northern Kenai Peninsula, spanning 1,000 km on an E–W gradient and 700 km on a N–S gradient. 127 relevés from 18 sites represent the range of structural and compositional variation in the matrix of vegetation and landform diversity. Data were analyzed by multivariate and traditional Braun-Blanquet methods. One association is distinguished, Sambuco racemosi-Alnetum viridis ass. nov. with three new subassociations, oplopanacetosum horridi, typicum, and rubetosum spectabilis with the latter subdivided into four variants. These phytocoena are well-differentiated, although they form a syntaxonomical continuum. The composition and structure of these communities are described and interpreted in relation to complex environmental factors; these are analyzed using Jancey's ranking on F-values. Community composition is primarily related to elevation, longitude, soil moisture, and latitude. Phytogeographic comparison of southwestern Alaska alder communities with those elsewhere in the North Pacific suggests a close floristic relationship to those of southcentral, southeastern Alaska and coastal British Columbia, Canada. All these communities belong to the same association, while those of the eastern and southern parts of the Kamchatka Peninsula, Russia belong to a different association. Syntaxonomy of the 4 major communities is discussed. Within the Northern Hemisphere, vascular plant species of southwestern Alaska alder thickets primarily occur in East Asia and North America, 36 %; while 26 % are circumpolar, and 22 % are restricted to North America. From a latitudinal perspective, the distribution of vascular plant species within these alder thickets peaks in the high-subarctic, low-subarctic, and temperate latitudinal zones, with low

  4. Levels and source apportionment of volatile organic compounds in southwestern area of Mexico City

    Energy Technology Data Exchange (ETDEWEB)

    Rodolfo Sosa, E. [Centro de Ciencias de la Atmosfera, Universidad Nacional Autonoma de Mexico, Circuito Exterior, Ciudad Universitaria, C.P. 04510, D.F. (Mexico); Humberto Bravo, A. [Centro de Ciencias de la Atmosfera, Universidad Nacional Autonoma de Mexico, Circuito Exterior, Ciudad Universitaria, C.P. 04510, D.F. (Mexico)], E-mail: hbravo@servidor.unam.mx; Violeta Mugica, A. [Universidad Autonoma Metropolitana, Azcapotzalco, D.F. (Mexico); Pablo Sanchez, A. [Centro de Ciencias de la Atmosfera, Universidad Nacional Autonoma de Mexico, Circuito Exterior, Ciudad Universitaria, C.P. 04510, D.F. (Mexico); Emma Bueno, L. [Centro Nacional de Investigacion y Capacitacion Ambiental, Instituto Nacional de Ecologia (Mexico); Krupa, Sagar [Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108 (United States)

    2009-03-15

    Thirteen volatile organic compounds (VOCs) were quantified at three sites in southwestern Mexico City from July 2000 to February 2001. High concentrations of different VOCs were found at a Gasoline refueling station (GS), a Condominium area (CA), and at University Center for Atmospheric Sciences (CAS). The most abundant VOCs at CA and CAS were propane, n-butane, toluene, acetylene and pentane. In comparison, at GS the most abundant were toluene, pentane, propane, n-butane, and acetylene. Benzene, a known carcinogenic compound had average levels of 28, 35 and 250 ppbC at CAS, CA, and GS respectively. The main contributing sources of the measured VOCs at CA and CAS were the handling and management of LP (Liquid Propane) gas, vehicle exhaust, asphalt works, and use of solvents. At GS almost all of the VOCs came from vehicle exhaust and fuel evaporation, although components of LP gas were also present. Based on the overall results possible abatement strategies are discussed. - Volatile organic compounds were quantified in order to perform their source apportionment in southwestern area of Mexico City.

  5. Levels and source apportionment of volatile organic compounds in southwestern area of Mexico City

    International Nuclear Information System (INIS)

    Rodolfo Sosa, E.; Humberto Bravo, A.; Violeta Mugica, A.; Pablo Sanchez, A.; Emma Bueno, L.; Krupa, Sagar

    2009-01-01

    Thirteen volatile organic compounds (VOCs) were quantified at three sites in southwestern Mexico City from July 2000 to February 2001. High concentrations of different VOCs were found at a Gasoline refueling station (GS), a Condominium area (CA), and at University Center for Atmospheric Sciences (CAS). The most abundant VOCs at CA and CAS were propane, n-butane, toluene, acetylene and pentane. In comparison, at GS the most abundant were toluene, pentane, propane, n-butane, and acetylene. Benzene, a known carcinogenic compound had average levels of 28, 35 and 250 ppbC at CAS, CA, and GS respectively. The main contributing sources of the measured VOCs at CA and CAS were the handling and management of LP (Liquid Propane) gas, vehicle exhaust, asphalt works, and use of solvents. At GS almost all of the VOCs came from vehicle exhaust and fuel evaporation, although components of LP gas were also present. Based on the overall results possible abatement strategies are discussed. - Volatile organic compounds were quantified in order to perform their source apportionment in southwestern area of Mexico City

  6. Cutaneous adornment in the Yoruba of south-western Nigeria - past and present.

    Science.gov (United States)

    George, Adekunle O; Ogunbiyi, Adebola O; Daramola, Olaniyi O M

    2006-01-01

    The traditional practice of cutaneous adornment is rich and vast amongst the Yoruba in the south-western part of Nigeria. There are varieties of traditionally made products, such as oils, soaps, fragrances, and beads, that have been employed over the years to enhance body beauty. This rich cultural heritage, however, has more or less given way to the values of Western culture, together with the disadvantages of the latter, manifesting as sequelae on the skin.

  7. Hibernacula selection by Townsend's big-eared bat in Southwestern Colorado

    Science.gov (United States)

    Hayes, Mark A.; Schorr, Robert A.; Navo, Kirk W.

    2011-01-01

    In western United States, both mine reclamations and renewed mining at previously abandoned mines have increased substantially in the last decade. This increased activity may adversely impact bats that use these mines for roosting. Townsend's big-eared bat (Corynorhinus townsendii) is a species of conservation concern that may be impacted by ongoing mine reclamation and renewed mineral extraction. To help inform wildlife management decisions related to bat use of abandoned mine sites, we used logistic regression, Akaike's information criterion, and multi-model inference to investigate hibernacula use by Townsend's big-eared bats using 9 years of data from surveys inside abandoned mines in southwestern Colorado. Townsend's big-eared bats were found in 38 of 133 mines surveyed (29%), and occupied mines averaged 2.6 individuals per mine. The model explaining the most variability in our data included number of openings and portal temperature at abandoned mines. In southwestern Colorado, we found that abandoned mine sites with more than one opening and portal temperatures near 0°C were more likely to contain hibernating Townsend's big-eared bats. However, mines with only one opening and portal temperatures of ≥10°C were occasionally occupied by Townsend's big-eared bat. Understanding mine use by Townsend's big-eared bat can help guide decisions regarding allocation of resources and placement of bat-compatible closures at mine sites scheduled for reclamation. When feasible we believe that surveys should be conducted inside all abandoned mines in a reclamation project at least once during winter prior to making closure and reclamation recommendations.

  8. Lessons from the Largest Epidemic of Avian Influenza Viruses in Taiwan, 2015.

    Science.gov (United States)

    Chang, Ching-Fen; King, Chwan-Chuen; Wan, Cho-Hua; Chang, Yun-Cheng; Chan, Ta-Chien; David Lee, Chang-Chun; Chou, Po-Hao Borris; Li, Zheng-Rong Tiger; Li, Yao-Tsun; Tseng, Tzu-Jung; Lee, Pei-Fen; Chang, Chuan-Hsiung

    2016-05-01

    The largest epidemic of avian influenza (AI) in history attacked poultry and wild birds throughout Taiwan starting January 6, 2015. This study analyzed surveillance results, epidemiologic characteristics, and viral sequences by using government-released information, with the intention to provide recommendations to minimize future pandemic influenza. The H5 clade 2.3.4.4 highly pathogenic AI viruses (HPAIVs) had not been detected in Taiwan before 2015. During this epidemic, four types of etiologic agents were identified: the three novel subtypes H5N2, H5N8, and H5N3 clade 2.3.4.4 HPAIVs and one endemic chicken H5N2 subtype (Mexican-like lineage) of low pathogenic AI viruses. Cocirculation of mixed subtypes also occurred, with H5N2 clade 2.3.4.4 HPAIVs accompanied by the H5N8 and H5N3 subtypes or old H5N2 viruses in the same farm. More than 90% of domestic geese died from this AI epidemic; geese were affected the most at the early outbreaks. The epidemic peaked in mid-January for all three novel H5 subtypes. Spatial epidemiology found that most affected areas were located in southwestern coastal areas. In terrestrial poultry (mostly chickens), different geographic distributions of AI virus subtypes were detected, with hot spots of H5N2 clade 2.3.4.4 vs. past-endemic old H5N2 viruses in Changhwa (P = 0.03) and Yunlin (P = 0.007) counties, respectively, of central Taiwan. Phylogenetic and sequence analyses of all the early 10 Taiwan H5 clade 2.3.4.4 isolates covering the three subtypes showed that they were very different from the HA of the past local H5 viruses from domestic ducks (75%-80%) and chickens (70%-75%). However, they had the highest sequence identity percentages (99.53%-100%), with the HA of A/crane/Kagoshima/KU13/2014(H5N8) isolated on December 7, 2014, in Japan being higher than those of recent American and Korean H5 HPAIVs [A/Northern pintail/Washington/40964/2014 (H5N2) and A/gyrfalcon/Washington/41088-6/2014 (H5N8): 99.02%-99.54% and A/Baikal teal

  9. A Molecular-Level Account of the Antigenic Hantaviral Surface

    Directory of Open Access Journals (Sweden)

    Sai Li

    2016-05-01

    Full Text Available Hantaviruses, a geographically diverse group of zoonotic pathogens, initiate cell infection through the concerted action of Gn and Gc viral surface glycoproteins. Here, we describe the high-resolution crystal structure of the antigenic ectodomain of Gn from Puumala hantavirus (PUUV, a causative agent of hemorrhagic fever with renal syndrome. Fitting of PUUV Gn into an electron cryomicroscopy reconstruction of intact Gn-Gc spike complexes from the closely related but non-pathogenic Tula hantavirus localized Gn tetramers to the membrane-distal surface of the virion. The accuracy of the fitting was corroborated by epitope mapping and genetic analysis of available PUUV sequences. Interestingly, Gn exhibits greater non-synonymous sequence diversity than the less accessible Gc, supporting a role of the host humoral immune response in exerting selective pressure on the virus surface. The fold of PUUV Gn is likely to be widely conserved across hantaviruses.

  10. Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus

    OpenAIRE

    Savithri, HS; Murthy, MRN

    1983-01-01

    The amino acid sequences of the non-structural protein (molecular weight 35,000; 3a protein) from three plant viruses - cucumber mosaic, brome mosaic and alfalfa mosaic have been systematically compared using the partial genomic sequences for these three viruses already available. The 3a protein of cucumber mosaic virus has an amino acid sequence homology of 33.7% with the corresponding protein of brome mosaic virus. A similar protein from alfalfa mosaic virus has a homology of 18.2% and 14.2...

  11. Alternative agricultures: Emphasis in contributions of the people of field of southwestern sector of Colombia

    International Nuclear Information System (INIS)

    Mejia Gutierrez, M.

    1995-01-01

    It offers a definition of alternative agricultures. Some antecedents are mentioned about the evolution of the Colombian movements from the chemical agriculture toward alternative forms. Some Colombian experiences are enumerated, making emphasis in people of field of the southwestern sector of the country contributions. Some conclusions settle down

  12. Influence of fire on dead woody material in forests of California and southwestern Oregon

    Science.gov (United States)

    Carl N. Skinner

    2002-01-01

    The frequent occurrence of fire in most forested areas of California and southwestern Oregon before this century has been well established. Likewise, the importance of dead woody material to various wildlife species as snags and downed logs has been well documented. It is unlikely that much large woody material survived fire long enough to decompose fully in fire...

  13. Migration stopover ecology of western avian populations: A southwestern migration workshop

    Science.gov (United States)

    Skagen, Susan K.; Melcher, Cynthia P.; Hazelwood, Rob

    2004-01-01

    The importance of migration stopover sites in ensuring that migratory birds successfully accomplish their journeys between breeding and non-breeding ranges has come to the forefront of avian research. Migratory birds that breed in western United States (US) and Canada and overwinter primarily in western Mexico migrate across the arid region of northern Mexico and southwestern US. Many of these migrants use lowland riparian stopover habitats, which comprise less than 0.1% of the western U.S. landscape. These habitats represent a significant conservation priority.

  14. Molecular characterization and multilocus genotypes of Enterocytozoon bieneusi among horses in southwestern China

    Directory of Open Access Journals (Sweden)

    Lei Deng

    2016-10-01

    Full Text Available Abstract Background Enterocytozoon bieneusi is one of the most prevalent causative species of diarrhea and enteric diseases in various hosts. E. bieneusi has been identified in humans, mammals, birds, rodents and reptiles in China, but few studies have reported E. bieneusi in horses. Therefore, the present study was conducted to assess the prevalence, molecular characteristics and zoonotic potential of E. bieneusi among horses in southwestern China. Findings Three hundred and thirty-three fecal specimens were collected from horses on five farms in the Sichuan and Yunnan provinces of southwestern China. The prevalence of E. bieneusi was 22.5 % (75/333, as determined by nested polymerase chain reaction and sequencing analysis of the internal transcribed spacer region of the ribosomal RNA gene of E. bieneusi. Altogether, 10 genotypes were identified among the 75 E. bieneusi-positive samples: four of these genotypes were known (horse1, horse2, SC02 and D and six were novel (SCH1-4 and YNH1-2. Multilocus sequence typing using three microsatellites (MS1, MS3 and MS7 and one minisatellite (MS4 revealed three, two, three and three genotypes at these four loci, respectively. In phylogenetic analysis, all the genotypes of E. bieneusi obtained in this study were clustered into three distinct groups: D, SC02 and SCH1-3 were clustered into group 1 (zoonotic potential; SCH4 was clustered into group 2 (cattle-hosted; whereas horse2, YNH1 and YNH2 were clustered into group 6 (unclear zoonotic potential. Conclusions This is the first report of E. bieneusi among horses in southwestern China. This is also the first multilocus genotyping analysis using microsatellite and minisatellite markers of E. bieneusi in horses. The presence of genotype D, which was previously identified in humans, and genotypes SC02 and SCH1-3, which belong to potential zoonotic group 1, these results indicate that horses are a potential source of human E. bieneusi infections in China.

  15. Epidemiological and molecular characteristics of emergent dengue virus in Yunnan Province near the China-Myanmar-Laos border, 2013-2015.

    Science.gov (United States)

    Hu, Ting-Song; Zhang, Hai-Lin; Feng, Yun; Fan, Jian-Hua; Tang, Tian; Liu, Yong-Hua; Zhang, Liu; Yin, Xiao-Xiong; Chen, Gang; Li, Hua-Chang; Zu, Jin; Li, Hong-Bin; Li, Yuan-Yuan; Yu, Jing; Zhang, Fu-Qiang; Fan, Quan-Shui

    2017-05-08

    Yunnan Province is located in southwestern China and neighbors the Southeast Asian countries, all of which are dengue-endemic areas. In 2000-2013, sporadic imported cases of dengue fever (DF) were reported almost annually in Yunnan Province. During 2013-2015, we confirmed that a large-scale indigenous DF outbreak emerged in cities of Yunnan Province near the China-Myanmar-Laos border. Epidemiological characteristics of DF in Yunnan Province during 2013-2015 were evaluated by retrospective analysis. A total of 232 dengue virus (DENV)-positive sera were randomly collected for sequence analysis of the capsid/premembrane region of DENV from patients with DF in Yunnan Province. The envelope gene of DENV isolates was also amplified and sequenced. Phylogenetic analyses were performed using the neighbor-joining method with the Tajima-Nei model. Phylogenetically, all DENV-positive samples could be classified into DENV-1 genotype I and DENV-2 Asian I genotype during 2013-2015 and DENV-4 genotype I in 2015 from Ruili City; and DENV-3 genotype II in 2013 and DENV-2 Cosmopolitan genotype in 2015 from Xishuangbanna Prefecture. Our results indicated that imported DF from patients from Laos and Myanmar was the primary cause of the DF epidemic in Yunnan Province. Additionally, DENV strains of all four serotypes were identified in indigenous cases in Yunnan Province during the same time period, while the dengue epidemic pattern observed in southwestern Yunnan showed characteristics of a hypoendemic nature: circulation of DENV-1 and DENV-2 over consecutive years.

  16. The Use of Coarse Resolution Satellite Imagery to Predict Human Puumala Virus Epidemics in Sweden.

    Science.gov (United States)

    1992-09-11

    Arenaviridae LASSA FEVER Lassa 36%(hosp) 10-30X hosp ARGENTINE HF Junin 5-30% 3C-6C/yr 12% 5% BOLIVIAN HF Machapo up to 24% low ARTHROPOD-BORNE HF TOGA...common and widely distributed mammalian species in Europe and Asia. As a result, a very large set of data has been collected on the ecology of this species

  17. Towards a delimitation of southwestern Nigeria into hydrological regions

    Science.gov (United States)

    Ogunkoya, O. O.

    1988-05-01

    Fifteen third-order drainage basins (1:50,000) on the Basement Complex rocks of southwestern Nigeria are classified into hydrological regions using hydrologic response parameters of average daily mean specific discharge ( QA); daily mean specific discharges equalled or exceeded 90% ( Q90), 50% ( Q50) and 10% ( Q10) of the study period; variability index of flow ( VI); recession constant ( K) of flow from peak discharge at the end of the rainy season to minimum discharge in the dry season; total annual runoff ( RO); total runoff within the dry season ( DSRO); dry season runoff as a percentage of total annual runoff (% DSRO); runoff coefficient ( ROC); and, number of days during the study period when there was no flow ( NFD). An ordination technique and a classification algorithm derived from cluster analysis technique and incorporating the analysis of variance (ANOVA) tests to determine the level of significance of the homogeneity of derived classes, were used to classify the fifteen basins into five hydrologically homogeneous regions. The constituent basins of each region were observed to share common basin geology. It was observed that those drainage basins having at least 50% of their basin area underlain by quartzitic rocks form two groups and have the most desirable or optimal hydrologic response patterns, desirability or optimality being in terms of ability to potentially meet water resource development requirements (i.e. high perennial discharge, low variability and large groundwater contribution to stream flow). The basins predominantly underlain by granite-gneisses and amphibolitic rocks have much poorer hydrologic response patterns. Hydrological regionalization in southwestern Nigeria appears to be influenced by drainage basin geology while percentage area of the basin underlain by massive quartzites could be used as an index of occurrence of desirable hydrologic response pattern.

  18. [Giant-cell arteritis: a descriptive study in southwestern Spain].

    Science.gov (United States)

    Calvo Romero, J M; Magro Ledesma, D; Ramos Salado, J L; Bureo Dacal, J C; de Dios Arrebola García, J; Bureo Dacal, P; Pérez Miranda, M

    2000-02-01

    To study the clinical and laboratory features of a series of patients with giant cell arteritis (GCA) or temporal arteritis in south-western Spain (Extremadura). Retrospective study of 25 patients with GCA diagnosed by temporal artery biopsy between 1990 and 1998. Nine patients were males and 16 (64%) females. Sixteen cases (64%) presented polymyalgia rheumatica (PMR). Other clinical findings were: fever/febricula (64%), constitutional syndrome (64%), new headache (96%), visual symptoms (48%), jaw claudication (17%) and abnormal temporal arteries (17%). All patients had an ESR of more than 50 mm/hour and a raised C-reactive protein. Thirteen patients (52%) had anemia (hemoglobin level < 12 g/dl). Eleven cases (44%) presented a platelet count higher than 400,000/mm3. Four patients (16%) had an elevated AST and/or ALT levels and 8 patients (32%) had an elevated GGT and/or alkaline phosphatase levels. In patients with PMR, there was a higher frequency of constitutional syndrome (81 vs 33%, p = 0.02). In females, there was a higher frequency of anemia (75 vs 11%, p < 0.01), platelet count higher than 400,000/mm3 (75 vs 0%, p < 0.01) and elevated AST and/or ALT (25 vs 0%, p < 0.01) and elevated GGT and/or alkaline phosphatase (50 vs 0%, p < 0.01) levels. The clinical and laboratory features of GCA in our series of patients in south-western Spain are similar to that described in other spanish populations, with the exception of a slightly higher frequency of PMR and a lower frequency of jaw claudication and abnormal temporal arteries. In our study, the clinical picture of GCA was more severe in patients with PMR and in females.

  19. Word-wide meta-analysis of Quercus forests ectomycorrhizal fungal diversity reveals southwestern Mexico as a hotspot.

    Science.gov (United States)

    García-Guzmán, Olimpia Mariana; Garibay-Orijel, Roberto; Hernández, Edith; Arellano-Torres, Elsa; Oyama, Ken

    2017-11-01

    Quercus is the most diverse genus of ectomycorrhizal (ECM) host plants; it is distributed in the Northern and Southern Hemispheres, from temperate to tropical regions. However, their ECM communities have been scarcely studied in comparison to those of conifers. The objectives of this study were to determine the richness of ECM fungi associated with oak forests in the Cuitzeo basin in southwestern Mexico; and to determine the level of richness, potential endemism and species similarity among ECM fungal communities associated with natural oak forests worldwide through a meta-analysis. The ITS DNA sequences of ECM root tips from 14 studies were included in the meta-analysis. In total, 1065 species of ECM fungi have been documented worldwide; however, 812 species have been only found at one site. Oak forests in Europe contain 416 species, Mexico 307, USA 285, and China 151. Species with wider distributions are Sebacinaceae sp. SH197130, Amanita subjunquillea, Cenococcum geophilum, Cortinarius decipiens, Russula hortensis, R. risigallina, R. subrubescens, Sebacinaceae sp. SH214607, Tomentella ferruginea, and T. lapida. The meta-analysis revealed (1) that Mexico is not only a hotspot for oak species but also for their ECM mycobionts. (2) There is a particularly high diversity of ECM Pezizales in oak seasonal forests from western USA to southwestern Mexico. (3) The oak forests in southwestern Mexico have the largest number of potential endemic species. (4) Globally, there is a high turnover of ECM fungal species associated with oaks, which indicates high levels of alpha and beta diversity in these communities.

  20. Assessment of grassland ecosystem conditions in the Southwestern United States: Wildlife and fish. Vol. 2

    Science.gov (United States)

    Deborah M. Finch

    2005-01-01

    This report is volume 2 of a two-volume ecological assessment of grassland ecosystems in the Southwestern United States. Broad-scale assessments are syntheses of current scientific knowledge, including a description of uncertainties and assumptions, to provide a characterization and comprehensive description of ecological, social, and economic components within an...

  1. Paleozoic stratigraphy of two areas in southwestern Indiana

    International Nuclear Information System (INIS)

    Droste, J.B.

    1976-09-01

    Two areas recommended for evaluation as solid waste disposal sites lie along the strike of Paleozoic rocks in southwestern Indiana. Thin Pennsylvanian rocks and rocks of the upper Mississippian are at the bedrock surface in maturely dissected uplands in both areas. The gross subsurface stratigraphy beneath both areas is the same, but facies and thickness variation in some of the subsurface Paleozoic units provide for some minor differences between the areas. Thick middle Mississippi carbonates grade downward into clastics of lower Mississippian (Borden Group) and upper Devonian (New Albany Shale) rocks. Middle Devonian and Silurian rocks are dominated by carbonate lithologies. Upper Ordovician (Maquoketa Group) overly carbonates of middle Ordovician age. Thick siltstone and shale of the Borden Group-New Albany Shale zone and Maquoketa Group rocks should be suitable for repository development

  2. Land subsidence in the southwestern Mojave Desert, California, 1992–2009

    Science.gov (United States)

    Brandt, Justin; Sneed, Michelle

    2017-07-19

    Groundwater has been the primary source of domestic, agricultural, and municipal water supplies in the southwestern Mojave Desert, California, since the early 1900s. Increased demands on water supplies have caused groundwater-level declines of more than 100 feet (ft) in some areas of this desert between the 1950s and the 1990s (Stamos and others, 2001; Sneed and others, 2003). These water-level declines have caused the aquifer system to compact, resulting in land subsidence. Differential land subsidence (subsidence occurring at different rates across the landscape) can alter surface drainage routes and damage surface and subsurface infrastructure. For example, fissuring across State Route 247 at Lucerne Lake has required repairs as has pipeline infrastructure near Troy Lake.Land subsidence within the Mojave River and Morongo Groundwater Basins of the southwestern Mojave Desert has been evaluated using InSAR, ground-based measurements, geology, and analyses of water levels between 1992 and 2009 (years in which InSAR data were collected). The results of the analyses were published in three USGS reports— Sneed and others (2003), Stamos and others (2007), and Solt and Sneed (2014). Results from the latter two reports were integrated with results from other USGS/ MWA cooperative groundwater studies into the broader scoped USGS Mojave Groundwater Resources Web site (http://ca.water.usgs.gov/ mojave/). This fact sheet combines the detailed analyses from the three subsidence reports, distills them into a longer-term context, and provides an assessment of options for future monitoring.

  3. Comparative analysis of chrysanthemum transcriptome in response to three RNA viruses: Cucumber mosaic virus, Tomato spotted wilt virus and Potato virus X.

    Science.gov (United States)

    Choi, Hoseong; Jo, Yeonhwa; Lian, Sen; Jo, Kyoung-Min; Chu, Hyosub; Yoon, Ju-Yeon; Choi, Seung-Kook; Kim, Kook-Hyung; Cho, Won Kyong

    2015-06-01

    The chrysanthemum is one of popular flowers in the world and a host for several viruses. So far, molecular interaction studies between the chrysanthemum and viruses are limited. In this study, we carried out a transcriptome analysis of chrysanthemum in response to three different viruses including Cucumber mosaic virus (CMV), Tomato spotted wilt virus (TSWV) and Potato virus X (PVX). A chrysanthemum 135K microarray derived from expressed sequence tags was successfully applied for the expression profiles of the chrysanthemum at early stage of virus infection. Finally, we identified a total of 125, 70 and 124 differentially expressed genes (DEGs) for CMV, TSWV and PVX, respectively. Many DEGs were virus specific; however, 33 DEGs were commonly regulated by three viruses. Gene ontology (GO) enrichment analysis identified a total of 132 GO terms, and of them, six GO terms related stress response and MCM complex were commonly identified for three viruses. Several genes functioning in stress response such as chitin response and ethylene mediated signaling pathway were up-regulated indicating their involvement in establishment of host immune system. In particular, TSWV infection significantly down-regulated genes related to DNA metabolic process including DNA replication, chromatin organization, histone modification and cytokinesis, and they are mostly targeted to nucleosome and MCM complex. Taken together, our comparative transcriptome analysis revealed several genes related to hormone mediated viral stress response and DNA modification. The identified chrysanthemums genes could be good candidates for further functional study associated with resistant to various plant viruses.

  4. Complete Genome Sequence of a Recombinant NADC30-Like Strain, SCnj16, of Porcine Reproductive and Respiratory Syndrome Virus in Southwestern China

    Science.gov (United States)

    Kang, Runmin; Xie, Bo; Tian, Yiming; Yang, Xin; Yu, Jifeng

    2018-01-01

    ABSTRACT The NADC30-like strains of porcine reproductive and respiratory syndrome virus (PRRSV) are characterized by a 131-amino-acid deletion in nonstructural protein 2 (NSP2). Here, we report the complete genome sequence of a recombinant NADC30-like PRRSV strain, SCnj16, that exhibits the molecular marker of the Chinese highly pathogenic PRRSV (HP-PRRSV) in NSP2. PMID:29439029

  5. Office of Inspector General report on audit of Southwestern Federal Power System combined financial statements and supplemental schedules (with independent auditors` reports thereon) for the years ended September 30, 1997 and 1996

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-10-06

    Southwestern Federal Power System (SWFPS) encompasses the operation of 24 hydroelectric power plants by the US Army Corps of Engineers and the marketing of power and energy from those plants by the Southwestern Power Administration (Southwestern) of the US Department of Energy. This report presents the results of the independent certified public accountants` audit of the SWFPS`s combined power system statements of assets, Federal investments and liabilities, and the related combined statements of revenues, expenses and accumulated net revenues, and cash flows.

  6. Prevalence of measles neutralizing antibody in children under 15 ...

    African Journals Online (AJOL)

    The immune status of children under 15 years in the Southwestern region of Nigeria against measles virus was determined using the neutralization test with a view to assessing the herd immunity to the virus in these communities. A total of 256 serum samples collected from children were tested by the beta method of ...

  7. Climate and glacier change in southwestern China during the past several decades

    International Nuclear Information System (INIS)

    Li Zongxing; He Yuanqing; An Wenling; Zhang Wei; Wang Yan; Wang Shijin; Liu Huancai; Cao Weihong; Wang Shuxin; Du Jiankuo; Song Linlin; Catto, Norm; Theakstone, Wilfred H

    2011-01-01

    Glaciers are distributed in the Nyainqntanglha Mountains, Himalayas, Tanggula Mountains, Gangdise Mountains and Hengduan Mountains in Southwestern China. Daily temperature and precipitation data from 111 stations, together with the records of glacier changes, indicate that temperature patterns during 1961–2008 were consistent with warming at a statistically significant level. Seasonal warming was greatest in autumn and winter. Temperature rise showed a significant relationship with sea surface temperature in the Western Pacific, net longwave radiation flux, altitude, sunshine hours, strengthening anticyclonic circulations in summer and anomalous cyclonic circulation in winter. The increase was more apparent in higher altitude areas than in lower ones. Precipitation variations were less marked than those of temperature, generally showing weak decreasing trends during 1961–2008. Increasing trends were apparent only in spring and winter, when regional trends of precipitation increases with altitude also were evident. The strengthening Western Pacific Subtropical Highs were related to precipitation variation. Against the background of increasing temperature, especially the increasing warming with altitude, the fronts of 32 glaciers and areas of 13 glacial basins have retreated, mass losses of 10 glaciers have been considerable, glacial lakes in six regions have expanded and melt water discharge of four basins has also increased, but these glaciers and basins in our study are only a fraction of the retreating glaciers over southwestern China.

  8. What influences climate and glacier change in southwestern China?

    Science.gov (United States)

    Yasunari, Teppei J.

    2011-12-01

    The subject of climate change in the Tibetan Plateau (TP) and Himalayas has taken on increasing importance because of the availability of water resources from their mountain glaciers (Immerzeel et al 2010). Many of the glaciers over these regions have been retreating, while some are advancing and stable (Yao et al 2004, Scherler et al 2011). Other studies report that some glaciers in the Himalayas show acceleration of their shrinkage (e.g., Fujita and Nuimura 2011). However, the causes of glacier melting are still difficult to grasp because of the complexity of climatic change and its influence on glacier issues. Despite this, it is vital that we pursue further study to enable future predictions of glacier changes. The paper entitled 'Climate and glacier change in southwestern China during the past several decades' by Li et al (2011) provided carefully analyzed, quality controlled, long-term data on atmospheric temperature and precipitation during the period 1961-2008. The data were obtained from 111 Chinese stations. The researchers performed systematic analyses of temperature and precipitation over the whole southwestern Chinese domain. They discussed those changes in terms of other meteorological components such as atmospheric circulation patterns, radiation and altitude difference, and then showed how these factors could contribute to climate and glacier changes in the region. Air temperature and precipitation are strongly associated with glacier mass balance because of heat balance and the addition of mass when it snows. Temperature warming trends over many places in southwestern China were unequivocally dominant in all seasons and at higher altitudes. This indicates that the heat contribution to the glaciers has been increasing. On the other hand, precipitation has a wider variability in time and space. It is more difficult to clearly understand the effect of precipitation on the climate and glacier melting characteristics in the whole of southwestern China

  9. On-site energy consumption and selected emissions at softwood sawmills in the southwestern United States

    Science.gov (United States)

    Dan Loeffler; Nathaniel Anderson; Todd A. Morgan; Colin B. Sorenson

    2016-01-01

    Presently there is a lack of information describing US southwestern energy consumption and emissions generated from the sawmilling industry. This article uses a mail survey of softwood sawmills in the states of Arizona, Colorado, and New Mexico to develop a profile of on-site energy consumption and selected emissions for the industry. Energy consumption is...

  10. Morphological and cytological diversity of goldenrods (Solidago L. and Euthamia Nutt. from south-western Poland

    Directory of Open Access Journals (Sweden)

    Szymura Magdalena

    2015-06-01

    Full Text Available Correlations between the morphology and cytology of invasive species and the effectiveness of invasion are among the most interesting questions in invasion ecology. Amongst exceptionally successful worldwide plant invaders, species of goldenrod (Solidago and Euthamia are considered. The main aim of the study was to compare the morphology (concerning life traits and cytology of the selected goldenrods occurring in south-western Poland with the effectiveness of their invasion. The results of the study, conducted in south-western Poland, showed that life traits of invasive Solidago and Euthamia taxa were clearly not connected with the effectiveness of invasion. The most widespread species, S. gigantea and S. altissima, had the highest ramets and uncommon species such as Euthamia graminifolia and S. virgaurea had short ramets. However, S. canadensis, which is tall, is also uncommon. The most frequent species (S. gigantea produced smaller inflorescence than less frequent species (S. altissima, S. canadensis and Euthamia graminifolia. The spread of particular taxa was also not connected with the ploidy level and DNA content.

  11. The chronological age estimation of third molar mineralization of Han population in southwestern China.

    Science.gov (United States)

    Qing, Maofeng; Qiu, Lihua; Gao, Zhi; Bhandari, Kishor

    2014-05-01

    The purpose of the study was to estimate the chronology of third molar mineralization in Han population of southwestern China and find its unique characteristics so that it would provide a reference in several legal cases like forensic age estimation. The study used Demirjian's staging method to study 2192 orthopantomograms of 984 male and 1208 female subjects aged between 8 and 25 years. The statistical data was analyzed by Student's t test and ANOVA. The conclusions of the study are: (1) The chronological mineralization age of third molars of Han population in Southwestern China is similar to the Turkish and the Japanese, was earlier than the Austrian and Han of South China, but later than the Spanish. (2) The mineralization timing of the third molars between two sides in maxilla or mandible has no significant differences in the same gender group. (3) There is no significant difference in mineralization of third molars between male and female, except for tooth 48 in Demirjian's stage E. (4) The mineralization of third molar in maxilla is earlier than mandible. Copyright © 2014 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

  12. Evaluation of insecticides for protecting southwestern ponderosa pines from attack by engraver beetles (Coleoptera: Curculionidae: Scolytinae)

    Science.gov (United States)

    Tom E. DeGomez; Christopher J. Hayes; John A. Anhold; Joel D. McMillin; Karen M. Clancy; Paul P. Bosu

    2006-01-01

    Insecticides that might protect pine trees from attack by engraver beetles (Ips spp.) have not been rigorously tested in the southwestern United States. We conducted two field experiments to evaluate the efficacy of several currently and potentially labeled preventative insecticides for protecting high-value ponderosa pine, Pinus ponderosa...

  13. A remote sensing tool to monitor and predict epidemiologic outbreaks of Hanta virus infections and Lyme disease

    Science.gov (United States)

    Barrios, M.; Verstraeten, W. W.; Amipour, S.; Wambacq, J.; Aerts, J.-M.; Maes, P.; Berckmans, D.; Lagrou, K.; van Ranst, M.; Coppin, P.

    2009-04-01

    Lyme disease and Hanta virus infection are the result of the conjunction of several climatic and ecological conditions. Although both affections have different causal agents, they share an important characteristic which is the fact that rodents play an important role in the contagion. One of the most important agents in the dispersion of these diseases is the bank vole (Clethrionomys glareoulus). The bank vole is a common host for both, the Borrelia bacteria which via the ticks (Ixodes ricinus) reaches the human body and causes the Lyme disease, and the Nephropatia epidemica which is caused by Puumala Hantavirus and affects kidneys in humans. The prefered habitat of bank voles is broad-leaf forests with an important presence of beeches (Fagus sylvatica) and oaks (Quercus sp.) and a relatively dense low vegetation layer. These vegetation systems are common in West-Europe and their dynamics have a great influence in the bank voles population and, therefore, in the spreading of the infections this study is concerned about. The fact that the annual seed production is not stable in time has an important effect in bank voles population and, as it has been described in other studies, in the number of reported cases of Hanta virus infections and Lyme disease. The years in which an abundant production of seeds is observed are referred to as mast years which are believed to obey to cyclic patterns and to certain climatologically characteristics of the preceding years. Statistical analysis have confirmed the correlation in the behaviour of the number of infected cases and the presence of mast years. This project aims at the design of a remote sensing based system (INFOPRESS - INFectious disease Outbreak Prediction REmote Sensing based System) that should enable local and national health care instances to predict and locate the occurrence of infection outbreaks and design policies to counteract undesired effects. The predictive capabilities of the system are based on the

  14. Competitive virus assay method for titration of noncytopathogenic bovine viral diarrhea viruses (END⁺ and END⁻ viruses).

    Science.gov (United States)

    Muhsen, Mahmod; Ohi, Kota; Aoki, Hiroshi; Ikeda, Hidetoshi; Fukusho, Akio

    2013-03-01

    A new, reliable and secure virus assay method, named the competitive virus assay (CVA) method, has been established for the titration of bovine viral diarrhea viruses (BVDVs) that either show the exaltation of Newcastle disease virus (END) phenomenon or heterologous interference phenomenon (but not the END phenomenon). This method is based on the principle of (1) homologous interference between BVDVs, by using BVDV RK13/E(-) or BVDV RK13/E(+) strains as competitor virus, and (2) END phenomenon and heterologous interference, by using attenuated Newcastle disease virus (NDV) TCND strain as challenge virus. In titration of BVDV END(+) and BVDV END(-) viruses, no significant difference in estimated virus titer was observed between CVA and conventional methods. CVA method demonstrated comparable levels of sensitivity and accuracy as conventional END and interference methods, which require the use of a velogenic Miyadera strain of NDV and vesicular stomatitis virus (VSV), both of which are agents of high-risk diseases. As such, the CVA method is a safer alternative, with increased bio-safety and bio-containment, through avoidance of virulent strains that are commonly employed with conventional methods. Copyright © 2012 Elsevier B.V. All rights reserved.

  15. Structural interpretation of the Konkan basin, southwestern continental margin of India, based on magnetic and bathymetric data

    Digital Repository Service at National Institute of Oceanography (India)

    Subrahmanyam, V.; Krishna, K.S.; Murty, G.P.S.; Rao, D.G.; Ramana, M.V.; Rao, M.G.

    Magnetic and bathymetric studies on the Konkan basin of the southwestern continental margin of India reveal prominent NNW-SSE, NW-SE, ENE-WSW, and WNE-ESE structural trends. The crystalline basement occurs at about 5-6 km below the mean sea level. A...

  16. Influences of prior wildfires on vegetation response to subsequent fire in a reburned Southwestern landscape

    Science.gov (United States)

    Jonathan D. Coop; Sean A. Parks; Sarah R. McClernan; Lisa M. Holsinger

    2016-01-01

    Large and severe wildfires have raised concerns about the future of forested landscapes in the southwestern United States, especially under repeated burning. In 2011, under extreme weather and drought conditions, the Las Conchas fire burned over several previous burns as well as forests not recently exposed to fire. Our purpose was to examine the influences of...

  17. An Investigation of Southwestern Area Principals and the Enactment of Crisis Plans in High Schools

    Science.gov (United States)

    Parker, Kerry L.

    2012-01-01

    The purpose of this study was to identify what southwestern area high school principals reported as the enactment of school crisis plans as described in the Center for Mental Health in Schools at UCLA (CMHS, 2008), "Resource Aid: Responding to a Crisis at School." The conceptual framework guiding the study was an adaptation of the Crisis…

  18. Environmental tolerance of an invasive riparian tree and its potential for continued spread in the southwestern US

    Science.gov (United States)

    Reynolds, L.V.; Cooper, D.J.

    2010-01-01

    Questions: Exotic plant invasion may be aided by facilitation and broad tolerance of environmental conditions, yet these processes are poorly understood in species-rich ecosystems such as riparian zones. In the southwestern United States (US) two plant species have invaded riparian zones: tamarisk (Tamarix ramosissima, T. chinensis, and their hybrids) and Russian olive (Elaeagnus angustifolia). We addressed the following questions: (1) is Russian olive able to tolerate drier and shadier conditions than cottonwood and tamarisk? (2) Can tamarisk and cottonwood facilitate Russian olive invasion? Location: Arid riparian zones, southwestern US. Methods: We analyzed riparian tree seedling requirements in a controlled experiment, performed empirical field studies, and analyzed stable oxygen isotopes to determine the water sources used by Russian olive. Results: Russian olive survival was significantly higher in dense shade and low moisture conditions than tamarisk and cottonwood. Field observations indicated Russian olive established where flooding cannot occur, and under dense canopies of tamarisk, cottonwood, and Russian olive. Tamarisk and native riparian plant species seedlings cannot establish in these dry, shaded habitats. Russian olive can rely on upper soil water until 15 years of age, before utilizing groundwater. Conclusions: We demonstrate that even though there is little evidence of facilitation by cottonwood and tamarisk, Russian olive is able to tolerate dense shade and low moisture conditions better than tamarisk and cottonwood. There is great potential for continued spread of Russian olive throughout the southwestern US because large areas of suitable habitat exist that are not yet inhabited by this species. ?? 2010 International Association for Vegetation Science.

  19. Childhood injuries in Ilesa, South-Western Nigeria: causes, pattern, and outcome.

    Science.gov (United States)

    Adegoke, S A; Ademola, A S; Dedeke, I O F; Oyelami, O A

    2010-01-01

    In Sub-Saharan Africa, infections and undernutrition are the leading causes of childhood death; however injuries are now contributing significantly to childhood morbidity and mortality. To determine the aetiology, morbidity and mortality associated with injuries in children in South-Western Nigeria. This was an observational cross-sectional study of consecutive childhood injury attendances and admissions into the hospital's Children Emergency Room (CHER) over a one-year period. Socio-demographic data as well as the data on the cause, site, and possible risks of injury; parts of the body affected and eventual outcome of the patients were documented. Injury accounted for 382 (10.6%) of the 3,604 attendances, 142 (11.9%) of 1193 admissions and 11 (20.4%) of 54 deaths in CHER. Their ages ranged from six weeks to 15 years, with a mean (SD) of 6.7 (3.9) years, and a male:female ratio of 1.6:1. Road traffic accidents, 130 (34.0%), were the most common cause, followed by falls 119 (31.2%), cuts 44 (11.5%), bits 26 (6.8%), and burns 24 (6.3%). Injuries occurred mostly at home 154 (40.1%), on the road 142 (37.4%), and at school 59 (15.2%). Lack of supervision and/or poor anticipation of potential dangers were the leading risks associated with childhood injuries. Injuries contribute significantly to childhood deaths in South-Western Nigeria. A well-orchestrated public enlightenment programme to improve home, school, and road supervision of children as well as concerted efforts to make these places safer could help ameliorate the situation.

  20. Virus wars: using one virus to block the spread of another

    Directory of Open Access Journals (Sweden)

    Matthew L. Paff

    2016-06-01

    Full Text Available The failure of traditional interventions to block and cure HIV infections has led to novel proposals that involve treating infections with therapeutic viruses–infectious viruses that specifically inhibit HIV propagation in the host. Early efforts in evaluating these proposals have been limited chiefly to mathematical models of dynamics, for lack of suitable empirical systems. Here we propose, develop and analyze an empirical system of a therapeutic virus that protects a host cell population against a lethal virus. The empirical system uses E. coli bacteria as the host cell population, an RNA phage as the lethal virus and a filamentous phage as the therapeutic virus. Basic dynamic properties are established for each virus alone and then together. Observed dynamics broadly agree with those predicted by a computer simulation model, although some differences are noted. Two cases of dynamics are contrasted, differing in whether the therapeutic virus is introduced before the lethal virus or after the lethal virus. The therapeutic virus increases in both cases but by different mechanisms. With the therapeutic virus introduced first, it spreads infectiously without any appreciable change in host dynamics. With the therapeutic virus introduced second, host abundance is depressed at the time therapy is applied; following an initial period of therapeutic virus spread by infection, the subsequent rise of protection is through reproduction by hosts already protected. This latter outcome is due to inheritance of the therapeutic virus state when the protected cell divides. Overall, the work establishes the feasibility and robustness to details of a viral interference using a therapeutic virus.

  1. Biodiversity and management of the Madrean Archipelago: The Sky Islands of southwestern United States and northwestern Mexico

    Science.gov (United States)

    Leonard H. DeBano; Peter H. Ffolliott; Alfredo Ortega-Rubio; Gerald J. Gottfried; Robert H. Hamre; Carleton B. Edminster

    1995-01-01

    This conference brought together scientists and managers from government, universities, and private organizations to examine the biological diversity and management challenges of the unique "sky island" ecosystems of the mountains of the southwestern United States and northwestern Mexico. Session topics included: floristic resources, plant ecology,...

  2. The significance of enset culture and biodiversity for rural household food and livelihood security in southwestern Ethiopia

    NARCIS (Netherlands)

    Negash, A.; Niehof, A.

    2004-01-01

    The significance of enset (Ensete ventricosum Welw. Cheesman) for the food and livelihood security of rural households in Southwestern Ethiopia, where this crop is the main staple, raises two major questions. The first concerns the related issues of household food security and livelihood security

  3. Zika virus disease

    Directory of Open Access Journals (Sweden)

    Adel I Al-Afaleq

    2017-01-01

    Full Text Available The Zika virus is an arbovirus belonging to the virus family Flaviviridae. The virus was isolated in 1947 from a rhesus monkey in the Zika Forest of Uganda. The virus causes sporadic mild human infections in Africa and later in Asia. However, by 2007 a major shift in its infection pattern was noticed and thousands of human infections were reported in the State of Yap and Federated States of Micronesia. In the last 3 years, major outbreaks have continued to occur and the virus has spread to several Pacific and American countries. These outbreaks were mostly asymptomatic; however, there were more severe clinical signs associated with the infections. Those signs included microcephaly and Guillain–Barre syndrome. It is believed that various species of mosquitoes can biologically transmit the virus. However, Aedes aegypti is most widely associated with the Zika virus. Recently, new modes of virus transmission have been reported, including mother-to-fetus, sexual, blood transfusion, animal bites, laboratory exposure and breast milk. Differential diagnosis is very important as some other arboviruses such as yellow fever virus, West Nile virus, dengue virus, and chikungunya virus have similar clinical manifestations to the Zika virus infection as well as relating serologically to some of these viruses. Established laboratory diagnostic tests to detect the Zika virus are limited, with reverse transcription polymerase chain reaction being the most widely used test. Taking into consideration the quickness of the spread of infection, size of the infected population and change of the infection severity pattern, the Zika virus infection merits collective efforts on all levels to prevent and control the disease. Limited research work and data, concurrent infection with other arboviruses, involvement of biological vectors, mass crowd events, human and trade movements and lack of vaccines are some of the challenges that we face in our efforts to prevent and

  4. Dengue virus receptor

    OpenAIRE

    Hidari, Kazuya I.P.J.; Suzuki, Takashi

    2011-01-01

    Dengue virus is an arthropod-borne virus transmitted by Aedes mosquitoes. Dengue virus causes fever and hemorrhagic disorders in humans and non-human primates. Direct interaction of the virus introduced by a mosquito bite with host receptor molecule(s) is crucial for virus propagation and the pathological progression of dengue diseases. Therefore, elucidation of the molecular mechanisms underlying the interaction between dengue virus and its receptor(s) in both humans and mosquitoes is essent...

  5. ECHO virus

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/001340.htm ECHO virus To use the sharing features on this page, please enable JavaScript. Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that can lead ...

  6. Risk factors and potential preventive measures for nephropatia epidemica in Sweden 2011–2012: a case–control study

    Directory of Open Access Journals (Sweden)

    Alin Gherasim

    2015-06-01

    Full Text Available Introduction: Nephropatia epidemica (NE, a relatively mild form of hemorrhagic fever with renal syndrome caused by the Puumala virus (PUUV, is endemic in northern Sweden. We aim to study the risk factors associated with NE in this region. Methods: We conducted a matched case–control study between June 2011 and July 2012. We compared confirmed NE cases with randomly selected controls, matched by age, sex, and place of infection or residence. We analyzed the association between NE and several occupational, environmental, and behavioral exposures using conditional logistic regression. Results: We included in the final analysis 114 cases and 300 controls, forming 246 case–control pairs. Living in a house with an open space beneath, making house repairs, living less than 50 m from the forest, seeing rodents, and smoking were significantly associated with NE. Conclusion: Our results could orient public health policies targeting these risk factors and subsequently reduce the NE burden in the region.

  7. Middle and Late Pleistocene glaciations in the southwestern Pamir and their effects on topography [Topography of the SW Pamir shaped by middle-late Pleistocene glaciation

    International Nuclear Information System (INIS)

    Stübner, Konstanze; Grin, Elena; Hidy, Alan J.; Schaller, Mirjam; Gold, Ryan D.

    2017-01-01

    Glacial chronologies provide insight into the evolution of paleo-landscapes, paleoclimate, topography, and the erosion processes that shape mountain ranges. In the Pamir of Central Asia, glacial morphologies and deposits indicate extensive past glaciations, whose timing and extent remain poorly constrained. Geomorphic data and 15 new "1"0Be exposure ages from moraine boulders and roches moutonnées in the southwestern Pamir document multiple Pleistocene glacial stages. The oldest exposure ages, View the MathML source113 ± 10ka, underestimate the age of the earliest preserved glacial advance and imply that the modern relief of the southwestern Pamir (peaks at ~5000–6000 m a.s.l.; valleys at ~2000–3000 m a.s.l.) already existed in the late Middle Pleistocene. Younger exposure ages (~40–80 ka, ~30 ka) complement the existing Central Asian glacial chronology and reflect successively less extensive Late Pleistocene glaciations. The topography of the Pamir and the glacial chronologies suggest that, in the Middle Pleistocene, an ice cap or ice field occupied the eastern Pamir high-altitude plateau, whereas westward flowing valley glaciers incised the southwestern Pamir. Since the Late Pleistocene deglaciation, the rivers of the southwestern Pamir adjusted to the glacially shaped landscape. As a result, localized rapid fluvial incision and drainage network reorganization reflect the transient nature of the deglaciated landscape.

  8. Hepatitis E virus coinfection with hepatotropic viruses in Egyptian children.

    Science.gov (United States)

    Zaki, Maysaa El Sayed; Salama, Osama Saad; Mansour, Fathy Awaad; Hossein, Shaimaa

    2008-06-01

    Major hepatotropic viruses continue to be important causes of acute viral hepatitis in developing countries. This work was carried out to detect the seroprevalence of hepatitis E virus (HEV) markers in children with acute viral hepatitis due to hepatotropic viruses (A, B and C) and non-A, non-B, non-C acute hepatitis, and to ascertain the influence of HEV superinfection in individuals infected with hepatitis viruses (A, B and C). We studied prospectively 162 children with sporadic acute hepatitis who reported to our hospital. Thirteen healthy controls were also included in the study. Laboratory investigations were performed, including complete liver function tests. Complete serological profiles for hepatitis viruses A, B, C and E were evaluated. HEV immunoglobulin G was detected with highest percentage among patients with hepatitis B (56.7%), followed by patients with hepatitis C virus (52.0%), hepatitis A virus (34.1%) and combined hepatitis B and C viruses (30.0%). The detection rate among patients with non-A, non-B, non-C hepatitis was 7.1%. HEV immunoglobulin M was found in 4.5% of hepatitis A virus patients and in 3.3% of hepatitis B patients. The prevalence of HEV immunoglobulin G and immunoglobulin M correlated with the levels of hepatic aspartate aminotransferase and alanine aminotransferase in patients with dual markers of infection with hepatitis E and other viruses compared to patients with acute hepatitis due to A and C viruses. HEV serological markers are common among children with acute viral hepatitis, especially from hepatitis C and B viruses. There may be increased sensitivity to HEV coinfection in association with hepatitis B and C infections. Dual infection with HEV and other hepatotropic viruses was associated with greater elevation of aspartate and alanine aminotransferases.

  9. Report on the survey of abandoned uraniferous lignite mines in southwestern North Dakota

    International Nuclear Information System (INIS)

    Lyon, R.J.; Prochaska, D.; Burgess, J.L.; Patrick, D.

    1986-03-01

    A radiation survey was conducted in October 1983 as part of the proposed reclamation plan of abandoned uraniferous lignite mines in southwestern North Dakota. The survey was made to determine the extent of contamination caused by mining operations in the 1960's. Radiation measurements were made and soil samples were taken at approximately 300 locations around six mine sites comprising eleven lignite mine pits. Toxic element analysis was also done on 50 of the soil samples

  10. Contribution to the lichen biota of the Stawy Milickie nature reserve and its adjacent area (Lower Silesia, southwestern Poland

    Directory of Open Access Journals (Sweden)

    Edyta Kaźmierska

    2016-07-01

    Full Text Available The paper presents the results of lichenological investigations conducted in the eastern part of the Stawy Milickie nature reserve and its buffer zone (Barycz Valley, southwestern Poland. The study area is a famous waterfowl refuge, consisting of several fishpond complexes, together with adjacent forests, meadows, and villages. In total 72 lichen taxa were recorded, growing on bark and branches of trees and shrubs, stumps, wood, soil, and anthropogenic rock substrates (mortar, concrete, bricks, etc.. Six species, namely Evernia prunastri, Flavoparmelia caperata, Hypogymnia tubulosa, Parmelina tiliacea, Physconia distorta, and Pleurosticta acetabulum, are threatened in Poland. As represented by single young thalli, they indicate the recent improvement of environmental conditions. The lichen biota of the study area is typical for the lowland regions of western and southwestern Poland.

  11. Fungal genomes that influence basic physiological processes of black grama and fourwing saltbush in arid southwestern rangelands

    Science.gov (United States)

    J.R. Barrow; M. Lucero; P. Osuna-Avila; I. Reyes-Vera; R.E. Aaltonen

    2007-01-01

    Symbiotic fungi confer multiple benefits such as enhanced photosynthetic rates and drought tolerance in host plants. Shrubs and grasses of southwestern deserts are colonized by symbiotic fungi that cannot be removed by conventional sterilization methods. These fungi were extensively studied in Bouteloua eriopoda (Torr.) Torr. and Atriplex...

  12. Geochemical evidence for diversity of dust sources in the southwestern United States

    Science.gov (United States)

    Reheis, M.C.; Budahn, J.R.; Lamothe, P.J.

    2002-01-01

    Several potential dust sources, including generic sources of sparsely vegetated alluvium, playa deposits, and anthropogenic emissions, as well as the area around Owens Lake, California, affect the composition of modern dust in the southwestern United States. A comparison of geochemical analyses of modern and old (a few thousand years) dust with samples of potential local sources suggests that dusts reflect four primary sources: (1) alluvial sediments (represented by Hf, K, Rb, Zr, and rare-earth elements, (2) playas, most of which produce calcareous dust (Sr, associated with Ca), (3) the area of Owens (dry) Lake, a human-induced playa (As, Ba, Li, Pb, Sb, and Sr), and (4) anthropogenic and/or volcanic emissions (As, Cr, Ni, and Sb). A comparison of dust and source samples with previous analyses shows that Owens (dry) Lake and mining wastes from the adjacent Cerro Gordo mining district are the primary sources of As, Ba, Li, and Pb in dusts from Owens Valley. Decreases in dust contents of As, Ba, and Sb with distance from Owens Valley suggest that dust from southern Owens Valley is being transported at least 400 km to the east. Samples of old dust that accumulated before European settlement are distinctly lower in As, Ba, and Sb abundances relative to modern dust, likely due to modern transport of dust from Owens Valley. Thus, southern Owens Valley appears to be an important, geochemically distinct, point source for regional dust in the southwestern United States. Copyright ?? 2002 Elsevier Science Ltd.

  13. Phytophthora viruses.

    Science.gov (United States)

    Cai, Guohong; Hillman, Bradley I

    2013-01-01

    Phytophthora sp. is a genus in the oomycetes, which are similar to filamentous fungi in morphology and habitat, but phylogenetically more closely related to brown algae and diatoms and fall in the kingdom Stramenopila. In the past few years, several viruses have been characterized in Phytophthora species, including four viruses from Phytophthora infestans, the late blight pathogen, and an endornavirus from an unnamed Phytophthora species from Douglas fir. Studies on Phytophthora viruses have revealed several interesting systems. Phytophthora infestans RNA virus 1 (PiRV-1) and PiRV-2 are likely the first members of two new virus families; studies on PiRV-3 support the establishment of a new virus genus that is not affiliated with established virus families; PiRV-4 is a member of Narnaviridae, most likely in the genus Narnavirus; and Phytophthora endornavirus 1 (PEV1) was the first nonplant endornavirus at the time of reporting. Viral capsids have not been found in any of the above-mentioned viruses. PiRV-1 demonstrated a unique genome organization that requires further examination, and PiRV-2 may have played a role in late blight resurgence in 1980s-1990s. Copyright © 2013 Elsevier Inc. All rights reserved.

  14. Viruses infecting reptiles.

    Science.gov (United States)

    Marschang, Rachel E

    2011-11-01

    A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch's postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

  15. Viruses Infecting Reptiles

    Directory of Open Access Journals (Sweden)

    Rachel E. Marschang

    2011-11-01

    Full Text Available A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch’s postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

  16. Helminth Infections of Rodents and Their Zoonotic Importance in Boyer-Ahmad District, Southwestern Iran

    OpenAIRE

    RANJBAR, Mohammad Javad; SARKARI, Bahador; MOWLAVI, Gholam Reza; SEIFOLLAHI, Zeinab; MOSHFE, Abdolali; ABDOLAHI KHABISI, Samaneh; MOBEDI, Iraj

    2017-01-01

    AbstractBackground: Rodents are considered as reservoirs of various zoonotic diseases including helminthic infections. The current study aimed to evaluate the prevalence of helminth infections in rodents, in Boyer-Ahmad district, Southwestern Iran.Methods: Overall, 52 rodents were captured from various areas of the district by Sherman live traps. The animals were then euthanized and dissected. During necropsy, each organ was examined macroscopically for presence of any cyst or visible parasit...

  17. Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

    Directory of Open Access Journals (Sweden)

    Bin Zhou

    2014-10-01

    Full Text Available Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV. Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1. This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2 showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

  18. Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

    Science.gov (United States)

    Zhou, Bin; Ma, Jingjiao; Liu, Qinfang; Bawa, Bhupinder; Wang, Wei; Shabman, Reed S; Duff, Michael; Lee, Jinhwa; Lang, Yuekun; Cao, Nan; Nagy, Abdou; Lin, Xudong; Stockwell, Timothy B; Richt, Juergen A; Wentworth, David E; Ma, Wenjun

    2014-10-01

    Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV). Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1). This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2) showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

  19. HIV, syphilis and behavioral risk factors among men who have sex with men in a drug-using area of southwestern China

    Science.gov (United States)

    Guanghua, Lan; Yi, Chen; Shuai, Tang; Zhiyong, Shen; Zhenzhu, Tang; Yuhua, Ruan; Yousuf, Mohammed Adnan; Wensheng, Fan

    2018-01-01

    Abstract To assess human immunodeficiency virus (HIV), syphilis, and behavioral risk factors among men who have sex with men (MSM) in southwestern China, where HIV started as a drug-driven epidemic, and shifted to mainly heterosexual transmission. These cross-sectional studies were conducted yearly in 2013, 2014, and 2015 in Guangxi, China. A total of 1,996, 1,965, and 1,697 participants were recruited in 2013, 2014, and 2015, respectively. The data included demographic and sexual behavioral variables. Other variables included individuals who used illegal drugs, and who received HIV counseling, testing, and free condoms, and peer education. Participants were tested for HIV, syphilis, and hepatitis C virus (HCV) with whole blood specimens. Questionnaires and laboratory testing data were double entered, and validated with EpiData software. The data were then transferred into SPSS software (SPSS Inc, Chicago, IL) and Chi-square test performed. The prevalence of HIV was 6.6% in 2013, 8.4% in 2014, and 11.2% in 2015. The prevalence of syphilis was 9.3% in 2013, 9.8% in 2014, and 6.1% in 2015. And HCV prevalence was 0.5% in 2013 and remained stable at 0.4% in 2014, and 2015. HIV infection, and associated factors among MSM in these 3 annual cross-sectional survey showed that HIV-infected MSM were significantly, more likely, to perform unprotected anal intercourse with any commercial male partners in the past 6 months (adjusted odds ratio [AOR] = 1.81, 95% CI: 1.50–2.20), had sex with any female partners in the past 6 months (AOR = 1.31, 95% CI: 1.01–1.71), used drugs in the past (AOR = 2.73, 95% CI: 1.30–5.71), and are syphilis infected (AOR = 3.53, 95% CI: 2.77–4.49). There is an urgent need for intervention strategies like condom distribution, HIV counseling, free testing, and education regarding safe sex, HIV, and other sex-related diseases in Guangxi to curb, and prevent HIV among MSM. PMID:29668597

  20. Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China.

    Science.gov (United States)

    Zhang, Yuzhen; Vrancken, Bram; Feng, Yun; Dellicour, Simon; Yang, Qiqi; Yang, Weihong; Zhang, Yunzhi; Dong, Lu; Pybus, Oliver G; Zhang, Hailin; Tian, Huaiyu

    2017-06-03

    Rabies is an important but underestimated threat to public health, with most cases reported in Asia. Since 2000, a new epidemic wave of rabies has emerged in Yunnan Province, southwestern China, which borders three countries in Southeast Asia. We estimated gene-specific evolutionary rates for rabies virus using available data in GenBank, then used this information to calibrate the timescale of rabies virus (RABV) spread in Asia. We used 452 publicly available geo-referenced complete nucleoprotein (N) gene sequences, including 52 RABV sequences that were recently generated from samples collected in Yunnan between 2008 and 2012. The RABV N gene evolutionary rate was estimated to be 1.88 × 10 -4 (1.37-2.41 × 10 -4 , 95% Bayesian credible interval, BCI) substitutions per site per year. Phylogenetic reconstructions show that the currently circulating RABV lineages in Yunnan result from at least seven independent introductions (95% BCI: 6-9 introductions) and represent each of the three main Asian RABV lineages, SEA-1, -2 and -3. We find that Yunnan is a sink location for the domestic spread of RABV and connects RABV epidemics in North China, South China, and Southeast Asia. Cross-border spread from southeast Asia (SEA) into South China, and intermixing of the North and South China epidemics is also well supported. The influx of RABV into Yunnan from SEA was not well-supported, likely due to the poor sampling of SEA RABV diversity. We found evidence for a lineage displacement of the Yunnan SEA-2 and -3 lineages by Yunnan SEA-1 strains, and considered whether this could be attributed to fitness differences. Overall, our study contributes to a better understanding of the spread of RABV that could facilitate future rabies virus control and prevention efforts.

  1. Holocene RSL variation on southwestern Disko Island (Greenland)

    DEFF Research Database (Denmark)

    Emerich Souza, Priscila; Nielsen, Lars; Kroon, Aart

    We investigate RSL variations during the Holocene in Lakse Bugt by assessing topography, internal structure, and luminescence ages of fossil beach ridges and the modern beach. Lakse Bugt (Bay) lies on the southwestern coast of Disko Island in a mesotidal regime and a mild wave climate. Beach ridges...... are widespread over the marine terrace, extending from ~40 above sea level (m asl). The most recent ridges terminate either at the beach or at the coastal sandy cliffs ~8 m asl immediately behind the modern beach. These ridges are covered mainly by rounded boulders; the terrain surfaces of the swales have...... clearly been deformed by freezing and thawing processes, in contrast to those of the ridge crests, which are relatively smooth. High-resolution reflection GPR data and high resolution topographical data were collected along cross-shore transects using a shielded 250 MHz antennae system and a DGPS system...

  2. Variations in Tectonic Activities of the Central and Southwestern Foothills, Taiwan, Inferred from River Hack Profiles

    Directory of Open Access Journals (Sweden)

    Yen-Chieh Chen

    2006-01-01

    Full Text Available A longitudinal profile of a river under static equilibrium shows no degradation or aggradation and can be ideally described as a straight line on a semi-logarithmic graph. This type of profile is called a “Hack profile”. If a river runs across uprising active structure systems, its Hack profile becomes convex. Accumulated tectonic strain varies positively with the intensity of the upwarping in Hack-profile convexity. In this paper, we compare curvature changes in Hack profiles of a series of rivers running through faults in the central and southwestern Foothills of Taiwan. Longitudinal profiles of these rivers were derived from two versions of topographic maps (1904 and 1985 and recent DTM data (2000. Prior to comparisons, we calibrated the 1904 topographic map, named “Taiwan Bautu”, by “offsetting” horizontal coordinates north and westward approximately 440 m and then “linear transforming” the elevation values. The Tungtzchiau fault of the central Foothills has remained inactive since 1935. Here relatively high uplift activity near the Wu River is indicated by significantly convex Hack profiles. This strain accumulation can be attributed to a lack of small magnitude earthquakes along the fault over the past 70 years. In the southwestern Foothills, relatively high uplift activity of similar intensity to the central Foothills is indicted near the Neocho River. Significant profiles with concave segments below the ideal graded profiles, at the lower reaches of rivers where continuous small magnitude strain release events have occurred, can only be found along the Sandieh, Neocho and Bazhang rivers in the southwestern Foothills. All these findings indicate that fault systems in the central Foothills tend to be locked and these faults could yield large earthquakes similar to the Chi-Chi event.

  3. On the edge of Bantu expansions: mtDNA, Y chromosome and lactase persistence genetic variation in southwestern Angola

    Directory of Open Access Journals (Sweden)

    Beleza Sandra

    2009-04-01

    Full Text Available Abstract Background Current information about the expansion of Bantu-speaking peoples is hampered by the scarcity of genetic data from well identified populations from southern Africa. Here, we fill an important gap in the analysis of the western edge of the Bantu migrations by studying for the first time the patterns of Y-chromosome, mtDNA and lactase persistence genetic variation in four representative groups living around the Namib Desert in southwestern Angola (Ovimbundu, Ganguela, Nyaneka-Nkumbi and Kuvale. We assessed the differentiation between these populations and their levels of admixture with Khoe-San groups, and examined their relationship with other sub-Saharan populations. We further combined our dataset with previously published data on Y-chromosome and mtDNA variation to explore a general isolation with migration model and infer the demographic parameters underlying current genetic diversity in Bantu populations. Results Correspondence analysis, lineage sharing patterns and admixture estimates indicate that the gene pool from southwestern Angola is predominantly derived from West-Central Africa. The pastoralist Herero-speaking Kuvale people were additionally characterized by relatively high frequencies of Y-chromosome (12% and mtDNA (22% Khoe-San lineages, as well as by the presence of the -14010C lactase persistence mutation (6%, which likely originated in non-Bantu pastoralists from East Africa. Inferred demographic parameters show that both male and female populations underwent significant size growth after the split between the western and eastern branches of Bantu expansions occurring 4000 years ago. However, males had lower population sizes and migration rates than females throughout the Bantu dispersals. Conclusion Genetic variation in southwestern Angola essentially results from the encounter of an offshoot of West-Central Africa with autochthonous Khoisan-speaking peoples from the south. Interactions between the Bantus

  4. Analysis of bacterial metagenomes from the Southwestern Gulf of Mexico for pathogens detection.

    Science.gov (United States)

    Escobedo-Hinojosa, Wendy; Pardo-López, Liliana

    2017-07-31

    Little is known about the diversity of bacteria in the Southwestern Gulf of Mexico. The aim of the study illustrated in this perspective was to search for the presence of bacterial pathogens in this ecosystem, using metagenomic data recently generated by the Mexican research group known as the Gulf of Mexico Research Consortium. Several genera of bacteria annotated as pathogens were detected in water and sediment marine samples. As expected, native and ubiquitous pathogenic bacteria genera such as Burkolderia, Halomonas, Pseudomonas, Shewanella and Vibrio were highly represented. Surprisingly, non-native genera of public health concern were also detected, including Borrelia, Ehrlichia, Leptospira, Mycobacterium, Mycoplasma, Salmonella, Staphylococcus, Streptococcus and Treponema. While there are no previous metagenomics studies of this environment, the potential influences of natural, anthropogenic and ecological factors on the diversity of putative pathogenic bacteria found in it are reviewed. The taxonomic annotation herein reported provides a starting point for an improved understanding of bacterial biodiversity in the Southwestern Gulf of Mexico. It also represents a useful tool in public health as it may help identify infectious diseases associated with exposure to marine water and ingestion of fish or shellfish, and thus may be useful in predicting and preventing waterborne disease outbreaks. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  5. Crop Yield Simulations Using Multiple Regional Climate Models in the Southwestern United States

    Science.gov (United States)

    Stack, D.; Kafatos, M.; Kim, S.; Kim, J.; Walko, R. L.

    2013-12-01

    Agricultural productivity (described by crop yield) is strongly dependent on climate conditions determined by meteorological parameters (e.g., temperature, rainfall, and solar radiation). California is the largest producer of agricultural products in the United States, but crops in associated arid and semi-arid regions live near their physiological limits (e.g., in hot summer conditions with little precipitation). Thus, accurate climate data are essential in assessing the impact of climate variability on agricultural productivity in the Southwestern United States and other arid regions. To address this issue, we produced simulated climate datasets and used them as input for the crop production model. For climate data, we employed two different regional climate models (WRF and OLAM) using a fine-resolution (8km) grid. Performances of the two different models are evaluated in a fine-resolution regional climate hindcast experiment for 10 years from 2001 to 2010 by comparing them to the North American Regional Reanalysis (NARR) dataset. Based on this comparison, multi-model ensembles with variable weighting are used to alleviate model bias and improve the accuracy of crop model productivity over large geographic regions (county and state). Finally, by using a specific crop-yield simulation model (APSIM) in conjunction with meteorological forcings from the multi-regional climate model ensemble, we demonstrate the degree to which maize yields are sensitive to the regional climate in the Southwestern United States.

  6. Environmental Determinants of Bronchial Asthma among Saudi School Children in Southwestern Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Jobran M. Alqahtani

    2016-12-01

    Full Text Available The aim here was to study the possible environmental and dietary determinants of asthma among school-aged children in Southwestern Saudi Arabia. In a cross-sectional study on a representative sample in Najran in Southwestern Saudi Arabia using an Arabic version of the modified ISAAC Phase III, parent-administered questionnaire data were collected. Skin prick tests (SPTs were performed. The study included 1700 school children, out of them 468 (27.5% were diagnosed with, cases of bronchial asthma and 20.8% (353 reported a 12-month nocturnal cough (as a proxy of severe asthma. In multivariable analysis, the study identified the following risk factors for having asthma or severe asthma: having dogs in the house, being male, being exposed to dense truck traffic on the street, using wood as a cooking fuel, conducting vigorous exercise, consuming eggs, consuming vegetables, having an allergic sensitization to dog hair, and being exposed to Cladosporium, pigweed, and Bermuda grass. On the other hand, the following food stuffs were found to be protective: seafood, fruit, and dairy products. Comprehensive school educational programs for both children and their parents should be adopted to prevent the use of wood in cooking and heating, to ensure that house pets are properly cared for, and to encourage proper dietary habits. Physicians should be informed of the patterns of allergens in order to improve asthma diagnosis and management.

  7. Meteorological and oceanographic aspects of a winter storm over the south-western Cape Province, South Africa

    International Nuclear Information System (INIS)

    Jury, M.R.; Shillington, F.A.; Prestidge, G.; Maxwell, C.D.

    1986-01-01

    In May the southern hemisphere circumpolar jet stream accelerates in response to a growing temperature gradient between the pole and equator. Initially, the jet stream may 'spin up' in pulses, causing the upper air current to become unstable and to meander equatorwards out of the higher latitudes (40-50 degrees S). Winter storms induced by the jet stream and which move, from west to east, to the south of the African continent are then guided by the upper air currents further north. Between 15 and 17 May 1984, such a sequence of synoptic weather events developed and the south-western Cape came under the influence of the 'roaring 40's'. In this article a chronology of the storm and its meteorological effects are described using data collected at the Koeberg nuclear power station, the Cape Town Airport Weather Office and across the south-western Cape. The destructive effects of the storm, particularly felt along the coast as a result of large swells and a significant storm surge, are discussed

  8. Prevalence of human immunodeficiency virus, hepatitis C virus ...

    African Journals Online (AJOL)

    Background. Human immunodeficiency virus (HIV), hepatitis B virus (HBV), hepatitis C virus (HCV) and syphilis remain major infections around the world. In Angola, about 166 000 individuals are living with HIV, representing a prevalence of 1.98% in adults between 15 and 49 years of age. In a 2003 study in Luanda, 4.5% ...

  9. Great Excavations: Tales of Early Southwestern Archaeology, 1888-1939, School of American Research Press, 1995

    Directory of Open Access Journals (Sweden)

    Stephen E. Nash

    1997-05-01

    Full Text Available Great Excavations: Tales of Early Southwestern Archaeology, 1 888-1939, is an "intentionally selective" account of eight major archaeological expeditions to the Southwest in the late 19th and early 20th centuries. It succeeds in achieving the goals set forth in the prologue. The reader is taken on an "armchair tour"  of early Southwestern excavations in the hope that the resulting "basic understanding of what the early archae­ologists did" will stimulate a desire to "learn more about the intriguing prehistory of the Southwest" (pp. xiii. As a student of the history of North American archaeology, I would be amiss to speak for Elion's "layperson" audience, but my suspicion is that her presentation will indeed stimulate those readers. As an archaeologist, I thoroughly enjoyed this book, and it may well be that Elliott's journalistic approach makes this book more enjoyable because she is able to remain above the level of detail that often burden archaeolo­gists' accounts of these expeditions. I must temper this statement by noting that Elliott's journalistic hyper­ bole and tendency to oversimplify complex research and analysis are at times discomforting.

  10. Epstein - Barr Virus

    OpenAIRE

    Štorkánová, Lenka

    2011-01-01

    Epstein-Barr virus Bachelor thesis summarizes the findings of Epstein-Barr virus (EBV), its general characteristics, transmission and spread of the virus, symptoms of disease and subsequent therapy and recovery. More specifically, it focuses on infectious mononucleosis, as well as more generally to other diseases, which the Epstein-Barr virus causes. It includes details of the vaccine against EB virus. There are the statistics on the incidence of infectious mononucleosis.

  11. Characterization of Mesa Verde Black-on-white ceramics from southwestern Colorado using NAA

    Energy Technology Data Exchange (ETDEWEB)

    Glowacki, D M; Neff, H; Glascock, M D [Missouri Univ., Columbia, MO (United States). Research Reactor Facility

    1995-10-01

    Sixty Mesa Verde variety Black-on-white bowls from Castle Rock Pueblo (5MT 1825) and Sand Canyon Pueblo (5MT765) in southwestern Colorado were chemically characterized using neutron activation analysis. Eleven clay sources local to the sites in the McElmo Drainage area were also analyzed. The results revealed two distinct compositional groups containing relative frequencies that imply local production. The occurrence of trade between the two sites was also identified. (author). 20 refs., 5 figs., 2 tabs.

  12. Emerging influenza viruses and the prospect of a universal influenza virus vaccine.

    Science.gov (United States)

    Krammer, Florian

    2015-05-01

    Influenza viruses cause annual seasonal epidemics and pandemics at irregular intervals. Several cases of human infections with avian and swine influenza viruses have been detected recently, warranting enhanced surveillance and the development of more effective countermeasures to address the pandemic potential of these viruses. The most effective countermeasure against influenza virus infection is the use of prophylactic vaccines. However, vaccines that are currently in use for seasonal influenza viruses have to be re-formulated and re-administered in a cumbersome process every year due to the antigenic drift of the virus. Furthermore, current seasonal vaccines are ineffective against novel pandemic strains. This paper reviews zoonotic influenza viruses with pandemic potential and technological advances towards better vaccines that induce broad and long lasting protection from influenza virus infection. Recent efforts have focused on the development of broadly protective/universal influenza virus vaccines that can provide immunity against drifted seasonal influenza virus strains but also against potential pandemic viruses. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Virus-host interaction in feline immunodeficiency virus (FIV) infection.

    Science.gov (United States)

    Taniwaki, Sueli Akemi; Figueiredo, Andreza Soriano; Araujo, João Pessoa

    2013-12-01

    Feline immunodeficiency virus (FIV) infection has been the focus of several studies because this virus exhibits genetic and pathogenic characteristics that are similar to those of the human immunodeficiency virus (HIV). FIV causes acquired immunodeficiency syndrome (AIDS) in cats, nevertheless, a large fraction of infected cats remain asymptomatic throughout life despite of persistent chronic infection. This slow disease progression may be due to the presence of factors that are involved in the natural resistance to infection and the immune response that is mounted by the animals, as well as due to the adaptation of the virus to the host. Therefore, the study of virus-host interaction is essential to the understanding of the different patterns of disease course and the virus persistence in the host, and to help with the development of effective vaccines and perhaps the cure of FIV and HIV infections. Copyright © 2013 Elsevier Ltd. All rights reserved.

  14. Post-wildfire recovery of riparian vegetation during a period of water scarcity in the southwestern USA

    Science.gov (United States)

    D. Max Smith; Deborah M. Finch; Christian Gunning; Roy Jemison; Jeffrey F. Kelly

    2009-01-01

    Wildland fires occur with increasing frequency in southwestern riparian forests, yet little is known about the effects of fire on populations of native and exotic vegetation. From 2003 to 2006, we monitored recovering woody vegetation in wildfire sites in the bosque (riparian forest) along the Middle Rio Grande of central New Mexico, USA. To examine recovery potential...

  15. Influences of previous wildfires on change, resistance, and resilience to reburning in a montane southwestern landscape

    Science.gov (United States)

    Jonathan D. Coop; Lisa Holsinger; Sarah McClernan; Sean A. Parks

    2015-01-01

    Land use legacies and climate have altered fire regimes across montane forests of much of the southwestern US (Allen and others 2002), and several recent wildfires have been extremely large and severe (Dennison and others 2014). Large openings resulting from high-severity fire in former ponderosa pine (Pinus ponderosa) and mixed conifer forests may be persistent given...

  16. Analysis of seismic reflectivity and AVO pattern of BSR using OBS data in the southwestern offshore region of Taiwan

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, W.B.; Yang, H.R. [Jinwen Univ. of Science and Technology, Hsintien City, Taipei County, Taiwan (China). Dept. of Environment and Property Management; Schnurle, P.; Liu, C.S. [National Taiwan Univ., Taipei, Taiwan (China). Inst. of Oceanography; Lee, C.S. [National Taiwan Ocean Univ., Keelung, Taiwan (China). Inst. of Applied Earth Science; Wang, Y.; Chung, S.H.; Chen, S.C. [Ministry of Economic Affairs, Taiwan (China). Central Geological Survey

    2008-07-01

    Regional multi-channel seismic reflection profiles that were conducted in Taiwan from 2003 to 2006 resulted in the identification of a gas hydrate-related bottom simulating reflector (BSR) in the broad southwestern offshore region of Taiwan. In order to understand the regional distribution of methane hydrate bearing layers and explore concentrated hydrate bearing layers, this paper presented a comprehensive analysis of reflection coefficient and amplitude-versus-offset (AVO) pattern of BSR using ocean bottom seismographs (OBSs) seismic data acquired in the southwestern offshore region of Taiwan. The study focused on the analysis and interpretation of airgun array signals recorded by OBSs during 2004 and 2006. Ten profiles of seismic reflection/refraction with a total length of about 140 km and recorded by 50 recovered OBSs were acquired on the active and passive margins in offshore southwestern Taiwan. Amplitudes of the direct water arrival, the multiple, and the BSR were picked interactively for all the OBS lines. A quantitative representation of reflector strength was provided by calculation of reflection coefficients. In general, the seafloor reflection coefficients for the active and passive margins were estimated as 0.1-0.25. The paper presented the data and analysis as well as the results of the study. It was concluded that the results of calculated reflection coefficient of the BSR in offshore southwest Taiwan suggested that inferred hydrate concentration for the passive margin profiles was relatively higher than that for the active margin profiles. 4 refs.

  17. Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses.

    Science.gov (United States)

    Chang, Hsiao-Han; Huber, Roland G; Bond, Peter J; Grad, Yonatan H; Camerini, David; Maurer-Stroh, Sebastian; Lipsitch, Marc

    2017-07-01

    To analyse the proportions of protein identity between Zika virus and dengue, Japanese encephalitis, yellow fever, West Nile and chikungunya viruses as well as polymorphism between different Zika virus strains. We used published protein sequences for the Zika virus and obtained protein sequences for the other viruses from the National Center for Biotechnology Information (NCBI) protein database or the NCBI virus variation resource. We used BLASTP to find regions of identity between viruses. We quantified the identity between the Zika virus and each of the other viruses, as well as within-Zika virus polymorphism for all amino acid k -mers across the proteome, with k ranging from 6 to 100. We assessed accessibility of protein fragments by calculating the solvent accessible surface area for the envelope and nonstructural-1 (NS1) proteins. In total, we identified 294 Zika virus protein fragments with both low proportion of identity with other viruses and low levels of polymorphisms among Zika virus strains. The list includes protein fragments from all Zika virus proteins, except NS3. NS4A has the highest number (190 k -mers) of protein fragments on the list. We provide a candidate list of protein fragments that could be used when developing a sensitive and specific serological test to detect previous Zika virus infections.

  18. Blueberry (Vaccinium corymbosum)-Virus Diseases

    Science.gov (United States)

    At least six viruses have been found in highbush blueberry plantings in the Pacific Northwest: Blueberry mosaic virus, Blueberry red ringspot virus, Blueberry scorch virus, Blueberry shock virus, Tobacco ringspot virus, and Tomato ringspot virus. Six other virus and virus-like diseases of highbush b...

  19. First find of serpentinite in the cliffs of the Heracleian Peninsula of Southwestern Crimea

    Science.gov (United States)

    Demina, L. I.; Promyslova, M. Yu.; Koronovskii, N. V.; Tzarev, V. V.

    2017-07-01

    This paper reports on the geological position and composition of serpentinite and serpentinitized peridotite, which we were the first to find in the cliffs of the southern part of the Heracleian Peninsula of Southwestern Crimea. In combination with pillow lava, gabbro, fragments of parallel dikes, and jasper, these rocks form an ophiolite association, which formerly belonged to the ancient crust of a back-arc basin that had reached the spreading stage of development.

  20. Changes in the forest ecosystems in areas impacted by aridization in south-western Romania

    OpenAIRE

    Pravalie, Remus; Sîrodoev, Igor; Peptenatu, Daniel

    2014-01-01

    Background In the past few decades, global climate change has accentuated the intensification of aridization in South-Western Romania, with direct and indirect consequences on the quality of forest ecosystems. In addition to qualitative deterioration, the quantitative changes brought about by intensive anthropic deforestation have created the conditions for a decline in the size of forest areas on vast tracts of land. The paper aims to analyze the qualitative and quantitative changes in the f...

  1. Comparison of traditional and ET-based irrigation scheduling of surface-irrigated cotton in the arid southwestern USA

    Science.gov (United States)

    The use of irrigation scheduling tools to produce cotton under-surface irrigation in the arid southwesternUSA is minimal. In the State of Arizona, where traditional irrigation scheduling is the norm, producersuse an average of 1460 mm annually to grow a cotton crop. The purpose of this paper was to ...

  2. 75 FR 15454 - Endangered and Threatened Wildlife and Plants; 5-Year Status Reviews of 14 Southwestern Species

    Science.gov (United States)

    2010-03-29

    ...] Endangered and Threatened Wildlife and Plants; 5-Year Status Reviews of 14 Southwestern Species AGENCY: Fish... species or subspecies of fish, wildlife, or plant, and any distinct population segment of any species of... extinction throughout all or a significant portion of its range. C. Threatened species (T) means any species...

  3. Single virus genomics: a new tool for virus discovery.

    Directory of Open Access Journals (Sweden)

    Lisa Zeigler Allen

    Full Text Available Whole genome amplification and sequencing of single microbial cells has significantly influenced genomics and microbial ecology by facilitating direct recovery of reference genome data. However, viral genomics continues to suffer due to difficulties related to the isolation and characterization of uncultivated viruses. We report here on a new approach called 'Single Virus Genomics', which enabled the isolation and complete genome sequencing of the first single virus particle. A mixed assemblage comprised of two known viruses; E. coli bacteriophages lambda and T4, were sorted using flow cytometric methods and subsequently immobilized in an agarose matrix. Genome amplification was then achieved in situ via multiple displacement amplification (MDA. The complete lambda phage genome was recovered with an average depth of coverage of approximately 437X. The isolation and genome sequencing of uncultivated viruses using Single Virus Genomics approaches will enable researchers to address questions about viral diversity, evolution, adaptation and ecology that were previously unattainable.

  4. Resistance to Two Heterologous Neurotropic Oncolytic Viruses, Semliki Forest Virus and Vaccinia Virus, in Experimental Glioma

    Science.gov (United States)

    Le Boeuf, Fabrice; Lemay, Chantal; De Silva, Naomi; Diallo, Jean-Simon; Cox, Julie; Becker, Michelle; Choi, Youngmin; Ananth, Abhirami; Sellers, Clara; Breton, Sophie; Roy, Dominic; Falls, Theresa; Brun, Jan; Hemminki, Akseli; Hinkkanen, Ari; Bell, John C.

    2013-01-01

    Attenuated Semliki Forest virus (SFV) may be suitable for targeting malignant glioma due to its natural neurotropism, but its replication in brain tumor cells may be restricted by innate antiviral defenses. We attempted to facilitate SFV replication in glioma cells by combining it with vaccinia virus, which is capable of antagonizing such defenses. Surprisingly, we found parenchymal mouse brain tumors to be refractory to both viruses. Also, vaccinia virus appears to be sensitive to SFV-induced antiviral interference. PMID:23221568

  5. Detection of sweet potato virus C, sweet potato virus 2 and sweet potato feathery mottle virus in Portugal.

    Science.gov (United States)

    Varanda, Carla M R; Santos, Susana J; Oliveira, Mônica D M; Clara, Maria Ivone E; Félix, Maria Rosário F

    2015-06-01

    Field sweet potato plants showing virus-like symptoms, as stunting, leaf distortion, mosaic and chlorosis, were collected in southwest Portugal and tested for the presence of four potyviruses, sweet potato virus C (SPVC), sweet potato virus 2 (SPV2), sweet potato feathery mottle virus (SPFMV), sweet potato virus G (SPVG), and the crinivirus sweet potato chlorotic stunt virus (SPCSV). DsRNA fractions were extracted from symptomatic leaves and used as templates in single and multiplex RT-PCR assays using previously described specific primers for each analyzed virus. The amplified reaction products for SPVC, SPV2 and SPFMV were of expected size, and direct sequencing of PCR products revealed that they correspond to the coat protein gene (CP) and showed 98%, 99% and 99% identity, respectively, to those viruses. Comparison of the CP genomic and amino acid sequences of the Portuguese viral isolates recovered here with those of ten other sequences of isolates obtained in different countries retrieved from the GenBank showed very few differences. The application of the RT-PCR assays revealed for the first time the presence of SPVC and SPFMV in the sweet potato crop in Portugal, the absence of SPVG and SPCSV in tested plants, as well as the occurrence of triple virus infections under field conditions.

  6. Hepatitis E virus and fulminant hepatitis--a virus or host-specific pathology?

    Science.gov (United States)

    Smith, Donald B; Simmonds, Peter

    2015-04-01

    Fulminant hepatitis is a rare outcome of infection with hepatitis E virus. Several recent reports suggest that virus variation is an important determinant of disease progression. To critically examine the evidence that virus-specific factors underlie the development of fulminant hepatitis following hepatitis E virus infection. Published sequence information of hepatitis E virus isolates from patients with and without fulminant hepatitis was collected and analysed using statistical tests to identify associations between virus polymorphisms and disease outcome. Fulminant hepatitis has been reported following infection with all four hepatitis E virus genotypes that infect humans comprising multiple phylogenetic lineages within genotypes 1, 3 and 4. Analysis of virus sequences from individuals infected by a common source did not detect any common substitutions associated with progression to fulminant hepatitis. Re-analysis of previously reported associations between virus substitutions and fulminant hepatitis suggests that these were probably the result of sampling biases. Host-specific factors rather than virus genotype, variants or specific substitutions appear to be responsible for the development of fulminant hepatitis. © 2014 The Authors. Liver International Published by John Wiley & Sons Ltd.

  7. Global Economic Integration and Local Community Resilience: Road Paving and Rural Demographic Change in the Southwestern Amazon

    Science.gov (United States)

    Perz, Stephen G.; Cabrera, Liliana; Carvalho, Lucas Araujo; Castillo, Jorge; Barnes, Grenville

    2010-01-01

    Recent years have witnessed an expansion in international investment in large-scale infrastructure projects with the goal of achieving global economic integration. We focus on one such project, the Inter-Oceanic Highway in the "MAP" region, a trinational frontier where Bolivia, Brazil, and Peru meet in the southwestern Amazon. We adopt a…

  8. Developing and implementing climate change adaptation options in forest ecosystems: a case study in southwestern Oregon, USA

    Science.gov (United States)

    Jessica E. Halofsky; David L. Peterson; Kerry L. Metlen; Gwyneth M. Myer; Alaric V. Sample

    2016-01-01

    Climate change will likely have significant effects on forest ecosystems worldwide. In Mediterranean regions, such as that in southwestern Oregon, USA, changes will likely be driven mainly by wildfire and drought. To minimize the negative effects of climate change, resource managers require tools and information to assess climate change vulnerabilities and to develop...

  9. Circulating avian influenza viruses closely related to the 1918 virus have pandemic potential

    Science.gov (United States)

    Watanabe, Tokiko; Zhong, Gongxun; Russell, Colin A.; Nakajima, Noriko; Hatta, Masato; Hanson, Anthony; McBride, Ryan; Burke, David F.; Takahashi, Kenta; Fukuyama, Satoshi; Tomita, Yuriko; Maher, Eileen A.; Watanabe, Shinji; Imai, Masaki; Neumann, Gabriele; Hasegawa, Hideki; Paulson, James C.; Smith, Derek J.; Kawaoka, Yoshihiro

    2014-01-01

    Summary Wild birds harbor a large gene pool of influenza A viruses that have the potential to cause influenza pandemics. Foreseeing and understanding this potential is important for effective surveillance. Our phylogenetic and geographic analyses revealed the global prevalence of avian influenza virus genes whose proteins differ only a few amino acids from the 1918 pandemic influenza virus, suggesting that 1918-like pandemic viruses may emerge in the future. To assess this risk, we generated and characterized a virus composed of avian influenza viral segments with high homology to the 1918 virus. This virus exhibited higher pathogenicity in mice and ferrets than an authentic avian influenza virus. Further, acquisition of seven amino acid substitutions in the viral polymerases and the hemagglutinin surface glycoprotein conferred respiratory droplet transmission to the 1918-like avian virus in ferrets, demonstrating that contemporary avian influenza viruses with 1918 virus-like proteins may have pandemic potential. PMID:24922572

  10. Lack of Durable Cross-Neutralizing Antibodies Against Zika Virus from Dengue Virus Infection.

    Science.gov (United States)

    Collins, Matthew H; McGowan, Eileen; Jadi, Ramesh; Young, Ellen; Lopez, Cesar A; Baric, Ralph S; Lazear, Helen M; de Silva, Aravinda M

    2017-05-01

    Cross-reactive antibodies elicited by dengue virus (DENV) infection might affect Zika virus infection and confound serologic tests. Recent data demonstrate neutralization of Zika virus by monoclonal antibodies or human serum collected early after DENV infection. Whether this finding is true in late DENV convalescence (>6 months after infection) is unknown. We studied late convalescent serum samples from persons with prior DENV or Zika virus exposure. Despite extensive cross-reactivity in IgG binding, Zika virus neutralization was not observed among primary DENV infections. We observed low-frequency (23%) Zika virus cross-neutralization in repeat DENV infections. DENV-immune persons who had Zika virus as a secondary infection had distinct populations of antibodies that neutralized DENVs and Zika virus, as shown by DENV-reactive antibody depletion experiments. These data suggest that most DENV infections do not induce durable, high-level Zika virus cross-neutralizing antibodies. Zika virus-specific antibody populations develop after Zika virus infection irrespective of prior DENV immunity.

  11. Economically important species dominate aboveground carbon storage in forests of southwestern Amazonia

    Directory of Open Access Journals (Sweden)

    N. Galia Selaya

    2017-06-01

    Full Text Available Tree species in tropical forests provide economically important goods and ecosystem services. In submontane forests of southwestern Amazonia, we investigated the degree to which tree species important for subsistence and trade contribute to aboveground carbon storage (AGC. We used 41 1-hectare plots to determine the species abundance, basal area, and AGC of stems > 10 cm diameter at breast height (dbh. Economically important taxa were classified using ethnobotanical studies and according to their stem density. These taxa (n = 263 accounted for 45% of total stems, 53% of total basal area, and 56% of total AGC, significantly more than taxa with minor or unknown uses (Welch test at p 40 cm and few stems in regeneration classes of dbh < 10 to 20 cm (e.g., Bertholletia excelsa, Cariniana spp., Cedrelinga spp., Ceiba spp., Dipteryx spp., whereas dominant Tetragastris spp., and Pseudolmedia spp. had most stems in low diameter classes and a median diameter of < 30 cm. Bertholletia excelsa, with 1.5 stems per hectare, showed the highest basal area of any species and accounted for 9% of AGC (11 Mg/ha, twice that of the second-ranking species. Our study shows that economic importance and carbon stocks in trees are closely linked in southwestern Amazonia. Unplanned harvests can disrupt synergistic dual roles altering carbon stocks temporally or permanently. Precautionary measures based on species ecology, demography, and regeneration traits should be at the forefront of REDD+ to reconcile maximum harvesting limits, biodiversity conservation, and sustainable forest management.

  12. Acid ran and below-cloud scavenging in south-western China

    International Nuclear Information System (INIS)

    Tanner, P.A.; Lei, H.C.; Huang, M.Y.; Shen, Z.L.

    1997-01-01

    Major urban areas in south-western China exhibit unique air pollution problems due to increasing use of high sulphur-content fuels in an environment of unfavourable topography and climate. Ambient levels of sulphur dioxide exceed the air quality objectives, and this gas is the major precursor of acid rain. Cloudwater chemistry studies are reported for urban, suburban and countryside locations, during the period 1985-89. Although cloudwater acidity was found to increase towards the cloud base, the acidity was much greater for rainwater samples collected simultaneously, and was more pronounced in urban rather than neighbouring suburban or countryside regions. The main contribution to the acidity arises from below-cloud scavenging of gas and aerosol and model calculations are able to simulate this behaviour

  13. Algae from the arid southwestern United States: an annotated bibliography

    Energy Technology Data Exchange (ETDEWEB)

    Thomas, W.H.; Gaines, S.R.

    1983-06-01

    Desert algae are attractive biomass producers for capturing solar energy through photosynthesis of organic matter. They are probably capable of higher yields and efficiencies of light utilization than higher plants, and are already adapted to extremes of sunlight intensity, salinity and temperature such as are found in the desert. This report consists of an annotated bibliography of the literature on algae from the arid southwestern United States. It was prepared in anticipation of efforts to isolate desert algae and study their yields in the laboratory. These steps are necessary prior to setting up outdoor algal culture ponds. Desert areas are attractive for such applications because land, sunlight, and, to some extent, water resources are abundant there. References are sorted by state.

  14. Ganjam virus.

    Science.gov (United States)

    Sudeep, A B; Jadi, R S; Mishra, A C

    2009-11-01

    Ganjam virus (GANV), a member of genus Nairovirus of family Bunyavirdae is of considerable veterinary importance in India. Though, predominantly tick borne, GANV was also isolated from mosquitoes, man and sheep. Neutralizing and complement fixing antibodies to GANV have been detected in animal and human sera collected from different parts of the country. Thirty three strains of GANV have been isolated from India, mainly from Haemaphysalis ticks. The virus replicated in certain vertebrate and mosquito cell lines and found pathogenic to laboratory animals. One natural infection and five laboratory-acquired infections in men were also reported. GANV is antigenically related to Nairobi sheep disease virus (NSDV) of Africa, which is highly pathogenic for sheep and goats causing 70-90 per cent mortality among the susceptible population. Recent molecular studies have demonstrated that GANV is an Asian variant of NSDV and both these viruses are related to the dreaded Crimean Congo haemorrhagic fever (CCHF) group viruses. The versatility of the virus to replicate in different arthropod species, its ability to infect sheep, goat and man makes it an important zoonotic agent.

  15. Surficial geologic map of the Dillingham quadrangle, southwestern Alaska

    Science.gov (United States)

    Wilson, Frederic H.

    2018-05-14

    The geologic map of the Dillingham quadrangle in southwestern Alaska shows surficial unconsolidated deposits, many of which are alluvial or glacial in nature. The map area, part of Alaska that was largely not glaciated during the late Wisconsin glaciation, has a long history reflecting local and more distant glaciations. Late Wisconsin glacial deposits have limited extent in the eastern part of the quadrangle, but are quite extensive in the western part of the quadrangle. This map and accompanying digital files are the result of the interpretation of black and white aerial photographs from the 1950s as well as more modern imagery. Limited new field mapping in the area was conducted as part of a bedrock mapping project in the northeastern part of the quadrangle; however, extensive aerial photographic interpretation represents the bulk of the mapping effort.

  16. [Yellow fever virus, dengue 2 and other arboviruses isolated from mosquitos, in Burkina Faso, from 1983 to 1986. Entomological and epidemiological considerations].

    Science.gov (United States)

    Robert, V; Lhuillier, M; Meunier, D; Sarthou, J L; Monteny, N; Digoutte, J P; Cornet, M; Germain, M; Cordellier, R

    1993-01-01

    An arbovirus surveillance was carried out in Burkina Faso from 1983 to 1986. It was based on crepuscular catches of mosquitoes on human bait in some wooded areas and in one town. The total collection was 228 catches with an average of 8 men per catch. The total number of mosquitoes caught was 44,956 among which 32,010 potential vector of yellow fever; all these mosquitoes were analysed for arbovirology. In the south-western part of the country (region of Bobo-Dioulasso), surveillance was conducted each year from August to November, whilst the circulation of Aedes-borne arboviruses is well known to be favoured. In 1983, 1984 and 1986, seven strains of yellow fever virus were isolated in circumstances remarkably similar. They came from selvatic areas and never from the town. They concerned only Aedes (Stegomyia) luteocephalus which is the very predominant potential vector of yellow fever in the region. They were obtained in low figure, between 1 and 4 per year. They occurred from 27th of October to 21th of November. These observations confirm that the southern portion of the Sudan savanna zone of West Africa is the setting of a customary circulation of yellow fever virus and therefore belongs to the endemic emergence zone. In 1986, two strains of dengue 2 virus were isolated. One concerned Ae. luteocephalus from the selvatic area, the other Ae. (St.) aegypti from the heart of town. These data suggest two distinct cycles for dengue 2 virus, one urban and one selvatic, which could coexist simultaneously in the same region. In the south-eastern part of the country (region of Fada-N'Gourma) a yellow fever epidemic occurred between September and December 1983; its study has enable to precise their entomological aspects. The entomological inoculation rate of yellow fever virus has been evaluated to 22 infected bites per man during the month of october, for a man living close to forest gallery. 25 strains of yellow fever virus strains was isolated from Ae. (Diceromyia

  17. Water source protection funds as a tool to address climate adaptation and resiliency in southwestern forests

    Science.gov (United States)

    Laura Falk McCarthy

    2014-01-01

    Wildfire intensity in the Southwestern United States has increased over the last decade corresponding with dense fuels and higher temperatures. For example, in New Mexico on the 2011 Las Conchas fire, intense fire and wind-driven fire behavior resulted in large areas of moderate and high severity burn (42 percent of burned area) with roughly 65,000 acres (26,300 ha)...

  18. The Drosophila Nora virus is an enteric virus, transmitted via feces.

    Science.gov (United States)

    Habayeb, Mazen S; Cantera, Rafael; Casanova, Gabriela; Ekström, Jens-Ola; Albright, Shannon; Hultmark, Dan

    2009-04-01

    The biology of the Drosophila viruses has not been intensely investigated. Here we have investigated the biology of the Nora virus, a persistent Drosophila virus. We find that injected Nora virus is able to replicate in the files, reaching a high titer that is maintained in the next generation. There is a remarkable variation in the viral loads of individual flies in persistently infected stocks; the titers can differ by three orders of magnitude. The Nora virus is mainly found in the intestine of infected flies, and the histology of these infected intestines show increased vacuolization. The virus is excreted in the feces and is horizontally transmitted. The Nora virus infection has a very mild effect on the longevity of the flies, and no significant effect on the number of eggs laid and the percent of eggs that develop to adults.

  19. Herpes viruses and human papilloma virus in nasal polyposis and controls

    Directory of Open Access Journals (Sweden)

    Dimitrios Ioannidis

    2015-12-01

    Full Text Available ABSTRACT INTRODUCTION: Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. OBJECTIVE: To compare the prevalence of human herpes viruses (1-6 and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. METHODS: Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. RESULTS: Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4% versus controls (4/38; 10.5%, but the difference did not reach significance (p = 0.06. Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29% versus controls (10/38; 26.32%,p = 0.13. In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%, and another was cytomegalovirus-positive (1/91; 1.1%, versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59 and low-risk-human papilloma viruses (6, 11. CONCLUSION: Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis.

  20. Evaluation of recombinant influenza virus-simian immunodeficiency virus vaccines in macaques.

    Science.gov (United States)

    Sexton, Amy; De Rose, Robert; Reece, Jeanette C; Alcantara, Sheilajen; Loh, Liyen; Moffat, Jessica M; Laurie, Karen; Hurt, Aeron; Doherty, Peter C; Turner, Stephen J; Kent, Stephen J; Stambas, John

    2009-08-01

    There is an urgent need for human immunodeficiency virus (HIV) vaccines that induce robust mucosal immunity. Influenza A viruses (both H1N1 and H3N2) were engineered to express simian immunodeficiency virus (SIV) CD8 T-cell epitopes and evaluated following administration to the respiratory tracts of 11 pigtail macaques. Influenza virus was readily detected from respiratory tract secretions, although the infections were asymptomatic. Animals seroconverted to influenza virus and generated CD8 and CD4 T-cell responses to influenza virus proteins. SIV-specific CD8 T-cell responses bearing the mucosal homing marker beta7 integrin were induced by vaccination of naïve animals. Further, SIV-specific CD8 T-cell responses could be boosted by recombinant influenza virus-SIV vaccination of animals with already-established SIV infection. Sequential vaccination with influenza virus-SIV recombinants of different subtypes (H1N1 followed by H3N2 or vice versa) produced only a limited boost in immunity, probably reflecting T-cell immunity to conserved internal proteins of influenza A virus. SIV challenge of macaques vaccinated with an influenza virus expressing a single SIV CD8 T cell resulted in a large anamnestic recall CD8 T-cell response, but immune escape rapidly ensued and there was no impact on chronic SIV viremia. Although our results suggest that influenza virus-HIV vaccines hold promise for the induction of mucosal immunity to HIV, broader antigen cover will be needed to limit cytotoxic T-lymphocyte escape.

  1. Schmallenberg virus – et nyt virus hos drøvtyggere

    DEFF Research Database (Denmark)

    Lohse, Louise

    undersøgelser på laboratoriet, blev alle prøver i en længere periode testet negative for kendte patogener, der evt. kunne tænkes at knytte sig til disse sygdomsudbrud. Efterfølgende fandt man ved sekvensanalyse på DNA/RNA oprenset fra prøvematerialet lighed med virus fra orthobunyavirusgruppen. Disse virus er...... normalt vektorbårne og er kendt som årsag til sygdom i drøvtyggere i Australien, Asien, Afrika og Mellemøsten. Det nye virus blev kaldt Schmallenberg virus (SBV) efter stedet hvor det første tilfælde blev påvist. Siden har Schmallenberg virus spredt sig og er nu påvist i får, kvæg og geder i Tyskland......, Holland, Belgien, Luxembourg, Frankrig, Spanien, Italien og Storbritannien (status april 2012). Det antages, at virus overføres med mitter og myg og inkubationstiden har fra eksperimentelle forsøg vist sig at være kort (1-4 dage). Virus cirkulerer få dage i blodet og manifesterer sig ved milde uspecifikke...

  2. Monochroa bronzella sp. n. from the southwestern Alps (Lepidoptera: Gelechiidae)

    DEFF Research Database (Denmark)

    Karsholt, Ole; Nel, Jacques; Fournier, François

    2013-01-01

    Abstract. Monochroa bronzella sp. n. is described from the southwestern Alps (France, Italy). It is closely related to M. nomadella (Zeller, 1868), with which it was hitherto confused. Literature records of M. nomadella from France and northwestern Italy refer to M. bronzella sp. n. The two species...... are most clearly distinguishable in the signa of the female genitalia. Females of both species have reduced wings, most pronounced in M. nomadella. The new species is found in mountain areas at altitudes from around 800 to 2000 m. Adults and male and female genitalia of these two species are figured....

  3. Sensitive radioimmunosorbent assay for the detection of plant viruses. [Cauliflower mosaic virus, lettuce mosaic virus

    Energy Technology Data Exchange (ETDEWEB)

    Ghabrial, S A; Shepherd, R J [Kentucky Univ., Lexington (USA); California Univ., Davis (USA))

    1980-06-01

    A simple and highly sensitive radioimmunosorbent assay (RISA) for the detection of plant viruses is described. The RISA procedure is a microplate method based on the principle of 'double-antibody sandwich' and follows essentially the protocol of the enzyme-linked immunosorbent assay (ELISA) (Clark and Adams, 1977), with the exception that /sup 125/I-labelled ..gamma..-globulin is substituted for the ..gamma..-globulin enzyme conjugate; the bound /sup 125/I-..gamma..-globulin is dissociated by acidification from the double-antibody sandwich. The radioactivity is proportional to virus concentration, and cauliflower mosaic virus (CaMV) and lettuce mosaic virus (LMV) could be detected at concentrations as low as 5 and 2 ng/ml, respectively. Direct evidence of the adverse effects of conjugation with enzyme on the binding abilities of antibodies is presented. The RISA procedure should prove valuable with viruses for which the ELISA values are too low to be dependable.

  4. A two millennium-long hot drought in the southwestern United States driven by Arctic sea-ice retreat

    Science.gov (United States)

    Lachniet, M. S.; Asmerom, Y.; Polyak, V. J.; Denniston, R. F.

    2017-12-01

    The Great Basin and lower Colorado River Basin are susceptible to sustained droughts that impact water resources and economic activity for millions of residents of the southwestern United States. The causes of past droughts in the basin remain debated. Herein, we document a strong Arctic to mid-latitude teleconnection during the Holocene that resulted in an extreme `hot drought' persisting for more than two millennia in the southwestern United States, based on a continuous growth rate and new high-resolution carbon and oxygen isotopic time series from a precisely-dated stalagmite from Leviathan Cave, Nevada. Between 9850-7670 yr B2k, highest Holocene oxygen isotope values indicate warm temperatures and moisture-sensitive proxies of high carbon isotope values and low stalagmite growth rate and minimal soil productivity and aquifer recharge. We refer to this period as the Altithermal Hot Drought. A second interval (6770 to 5310 yr B2k) indicates a warm drought. The two Altithermal droughts exceed in severity and duration any droughts observed in the modern and tree-ring records. Further, we show that Altithermal hot droughts were widespread in the southwestern United States, at a time when human populations in the Great Basin were low. The droughts show strong similarities to proxies for Arctic paleoclimate and we suggest that insolation-driven changes in sea ice and snow cover extent in the high latitudes drove atmospheric circulation anomalies in the Great Basin. Because rising greenhouse gas concentrations are projected to increase global and Arctic temperatures with a possible loss of summer sea by the end of the 21st century, our record suggests that a return to prolonged hotter and drier conditions in the southern Great Basin and lower Colorado River Basin is possible within coming centuries.

  5. Mapping of quantitative trait loci for resistance to fall armyworm and southwestern corn borer leaf-feeding damage in maize.

    Science.gov (United States)

    Fall armyworm (FAW), Spodoptera frugiperda (J. E. Smith), and southwestern corn borer (SWCB), Diatraea grandiosella Dyar are damaging insect pests of maize resulting in significant yield and economic losses. A previous study identified quantitative trait loci (QTL) that contribute to reduced leaf-fe...

  6. Dynamics and sequential analysis of a mesotidal shoal and intershoal channel complex in the Eastern Scheldt (southwestern Netherlands)

    NARCIS (Netherlands)

    Nio, S-D.; Berg, J.H. van den; Goesten, M.; Smulders, F.

    A detailed survey was carried out on a mesotidal shoal and intershoal channel complex near the mouth of the Eastern Scheldt in the southwestern part of The Netherlands during the summers of 1976 and 1977. The objectives were to establish a relationship between the morphological changes through time

  7. Onemocnění člověka způsobená hantaviry – stále opomíjené zoonózy?

    Czech Academy of Sciences Publication Activity Database

    Vrbovská, V.; Chalupa, P.; Straková, Petra; Hubálek, Zdeněk; Rudolf, Ivo

    2015-01-01

    Roč. 64, č. 4 (2015), s. 188-196 ISSN 1210-7913 Institutional support: RVO:68081766 Keywords : hantaviruses * Dobrava-Belgrade * Puumala * rodents * insectivores * emerging diseases * surveillance Subject RIV: FN - Epidemiology, Contagious Diseases ; Clinical Immunology Impact factor: 0.268, year: 2015

  8. Release of Virus from Lymphoid Tissue Affects Human Immunodeficiency Virus Type 1 and Hepatitis C Virus Kinetics in the Blood

    NARCIS (Netherlands)

    Müller, Viktor; Marée, Athanasius F.M.; Boer, R.J. de

    2000-01-01

    Kinetic parameters of human immunodeficiency virus type 1 (HIV-1) and hepatitis C virus (HCV) infections have been estimated from plasma virus levels following perturbation of the chronically infected (quasi-) steady state. We extend previous models by also considering the large pool of virus

  9. Geospatial data to support analysis of water-quality conditions in basin-fill aquifers in the southwestern United States

    Science.gov (United States)

    McKinney, Tim S.; Anning, David W.

    2009-01-01

    The Southwest Principal Aquifers study area consists of most of California and Nevada and parts of Utah, Arizona, New Mexico, and Colorado; it is about 409,000 square miles. The Basin-fill aquifers extend through about 201,000 square miles of the study area and are the primary source of water for cities and agricultural communities in basins in the arid and semiarid southwestern United States (Southwest). The demand on limited ground-water resources in areas in the southwestern United States has increased significantly. This increased demand underscores the importance of understanding factors that affect the water quality in basin-fill aquifers in the region, which are being studied through the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) program. As a part of this study, spatial datasets of natural and anthropogenic factors that may affect ground-water quality of the basin-fill aquifers in the southwestern United States were developed. These data include physical characteristics of the region, such as geology, elevation, and precipitation, as well as anthropogenic factors, including population, land use, and water use. Spatial statistics for the alluvial basins in the Southwest have been calculated using the datasets. This information provides a foundation for the development of conceptual and statistical models that relate natural and anthropogenic factors to ground-water quality across the Southwest. A geographic information system (GIS) was used to determine and illustrate the spatial distribution of these basin-fill variables across the region. One hundred-meter resolution raster data layers that represent the spatial characteristics of the basins' boundaries, drainage areas, population densities, land use, and water use were developed for the entire Southwest.

  10. Hepatitis E Virus and Related Viruses in Animals.

    Science.gov (United States)

    Thiry, D; Mauroy, A; Pavio, N; Purdy, M A; Rose, N; Thiry, E; de Oliveira-Filho, E F

    2017-02-01

    Hepatitis E is an acute human liver disease in healthy individuals which may eventually become chronic. It is caused by the hepatitis E virus (HEV) and can have a zoonotic origin. Nearly 57,000 people die yearly from hepatitis E-related conditions. The disease is endemic in both developing and developed countries with distinct epidemiologic profiles. In developing countries, the disease is associated with inadequate water treatment, while in developed countries, transmission is associated with animal contact and the ingestion of raw or uncooked meat, especially liver. All human HEV are grouped into at least four genotypes, while HEV or HEV-related viruses have been identified in an increasing number of domestic and wild animal species. Despite a high genetic diversity, only one single HEV serotype has been described to date for HEV genotypes 1-4. The discovery of new HEV or HEV-related viruses leads to a continuing increase in the number of genotypes. In addition, the genome organization of all these viruses is variable with overlapping open reading frames (ORF) and differences in the location of ORF3. In spite of the role of some domestic and wild animals as reservoir, the origin of HEV and HEV-related viruses in humans and animals is still unclear. This review discusses aspects of the detection, molecular virology, zoonotic transmission and origin of HEV and HEV-related viruses in the context of 'One Health' and establishes a link between the previous and the new taxonomy of this growing virus family. © 2015 Blackwell Verlag GmbH.

  11. "The evil virus cell": Students' knowledge and beliefs about viruses.

    Science.gov (United States)

    Simon, Uwe K; Enzinger, Sonja M; Fink, Andreas

    2017-01-01

    Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

  12. New DDT inputs after 30 years of prohibition in Spain. A case study in agricultural soils from south-western Spain

    International Nuclear Information System (INIS)

    Munoz-Arnanz, Juan; Jimenez, Begona

    2011-01-01

    This study provides information on the current status of contamination by DDT in agricultural soils in south-western Spain. A recent use of technical DDT in at least 17% of the soils was found based on the values ( p,p ' /p,p ' =[p,p ' -DDE+p,p ' -DDD]/[p,p ' -DDT]. According to the ratio R o,p ' /p,p ' =[o,p ' -DDT]/[p,p ' -DDT], a dicofol type contamination was detected in about 27% of the soils. A wide range of concentrations was observed (0.08-11.1 ng/g d.w.) regardless of the type of crop soil. Enantiomeric fractions (EFs), based on the chiral analysis of o,p'-DDT residues differed from the racemic value (0.500) in most soils but they were not correlated with the study variables [DDTs], SOM, R p,p ' /p,p ' and R o,p ' /p,p ' . Given the health risks posed by DDT, our findings support how the environmental control of legacy pollutants such as DDT cannot be neglected. - Highlights: → Fresh technical DDT inputs detected in agricultural soils. → A Dicofol type contamination was found in agricultural soils from south-western Spain. → EFs of o,p'-DDT do not provide a good measure for overall DDT degradation. - Based on the isomeric ratio R p,p ' /p,p ' , a plausible recent input of technical DDT was found in agricultural soils from south-western Spain after more than 30 years of DDT ban.

  13. Herpes viruses and human papilloma virus in nasal polyposis and controls.

    Science.gov (United States)

    Ioannidis, Dimitrios; Lachanas, Vasileios A; Florou, Zoe; Bizakis, John G; Petinaki, Efthymia; Skoulakis, Charalampos E

    2015-01-01

    Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. To compare the prevalence of human herpes viruses (1-6) and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4%) versus controls (4/38; 10.5%), but the difference did not reach significance (p=0.06). Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29%) versus controls (10/38; 26.32%, p=0.13). In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%), and another was cytomegalovirus-positive (1/91; 1.1%), versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59) and low-risk-human papilloma viruses (6, 11). Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis. Copyright © 2015 Associação Brasileira de Otorrinolaringologia e Cirurgia Cérvico-Facial. Published by Elsevier Editora Ltda. All rights reserved.

  14. In Hospital Stroke Mortality: Rates and Determinants in Southwestern Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Adel A. Alhazzani

    2018-05-01

    Full Text Available Objectives: The present study analyzed in-hospital first-time stroke mortality in southwestern Saudi Arabia over one-year to assess the in-hospital stroke case fatality rate, mortality rate and explore the factors associated with in-hospital stroke mortality. Study Design: Hospital based follow-up study. Methods: First-time stroke patients admitted to all hospitals in Asser region over one-year period (January through December 2016 were included in the study. Data about personal characteristics, pre-stroke history and clinical criteria, on admission clinical criteria, in-hospital complications and survival status were collected. The last reported Aseer region population was used to calculate age and sex stroke mortality rate per 100,000 population/year. Hazard ratios (HR and concomitant 95% confidence intervals (95% CI were computed using multivariate Cox regression survival analysis. Kaplan-Meier curve survival analysis for stroke patients were plotted. Results: A total of 121 in-hospital deaths out of 1249 first-time stroke patients giving an overall case fatality rate (CFR of 9.7%. Non-significant difference with gender and age were observed in CFR. Overall, in-hospital stroke mortality rate was 5.58 per 100,000/year. Males and elders showed a significantly higher mortality rates. Multivariable Cox regression analyses revealed pre-stroke smoking (HR = 2.36, pre-stroke hypertension (HR = 1.77, post-stroke disturbed consciousness (HR = 6.86, poor mobility (HR = 2.60 and developing pulmonary embolism (HR = 2.63 as significant predictors of in-hospital stroke mortality. Conclusions: In Southwestern Saudi Arabia, the in-hospital stroke mortality rate is higher in men and increases with aging. The prognosis of acute stroke could be improved by smoking cessation, better control of hypertension and prevention of in hospital complication particularly pulmonary embolism.

  15. Characterisation of organic matter associated with groundwater arsenic in reducing aquifers of southwestern Taiwan.

    Science.gov (United States)

    Al Lawati, Wafa M; Jean, Jiin-Shuh; Kulp, Thomas R; Lee, Ming-Kuo; Polya, David A; Liu, Chia-Chuan; van Dongen, Bart E

    2013-11-15

    Arsenic (As) in groundwaters extensively used by people across the world constitutes a serious public health threat. The importance of organic matter (OM) as an electron donor in microbially-mediated reduction of As(V) or Fe(III)-bearing As-host minerals leading to mobilisation of solid-phase arsenic is widely recognised. Notwithstanding this, there are few studies characterising OM in such aquifers and, in particular, there is a dearth of data from the classic arsenic bearing aquifers in southwestern Taiwan. Organic geochemical analyses of sediments from a known groundwater arsenic hot-spot in southwestern Taiwan revealed contributions of thermally mature and plant derived origin, consistent with OM sources in all other Asian groundwater aquifer sediments analysed to date, indicating comparable sources and routes of OM transfer. The combined results of amended As(V) reduction assays with the organic geochemical analysis revealed that the microbiological process of dissimilatory As(V) reduction is active in this aquifer, but it is not controlled by a specific source of analysed OM. These indicate that (i) part of the OM that was considered to be less bio-available could still be used as an electron donor or (ii) other electron donors, not analysed in present study, could be controlling the rate of As release. Copyright © 2012 Elsevier B.V. All rights reserved.

  16. Computer Virus and Trends

    OpenAIRE

    Tutut Handayani; Soenarto Usna,Drs.MMSI

    2004-01-01

    Since its appearance the first time in the mid-1980s, computer virus has invited various controversies that still lasts to this day. Along with the development of computer systems technology, viruses komputerpun find new ways to spread itself through a variety of existing communications media. This paper discusses about some things related to computer viruses, namely: the definition and history of computer viruses; the basics of computer viruses; state of computer viruses at this time; and ...

  17. Three new species of Begonia (Begoniaceae from Limestone Hills in southwestern Sarawak, Borneo

    Directory of Open Access Journals (Sweden)

    Che-Wei Lin

    2017-04-01

    Full Text Available Most species of Begonia in Borneo, like those of other areas, are narrowly distributed and site-specific. In this study we report three new species of Begonia, namely B. felis C. W. Lin & C.-I Peng, B. kuchingensis C. W. Lin & C.-I Peng (sect. Petermannia and B. serianensis C. W. Lin & C.-I Peng (sect. Reichenheimia from the Padawan-Serian limestone hills in southwestern Sarawak. In addition to the taxonomic account, color plates, line drawings, a distribution map, and comparisons with phenetically similar species are provided to aid in identification.

  18. Viruses in reptiles

    Directory of Open Access Journals (Sweden)

    Ariel Ellen

    2011-09-01

    Full Text Available Abstract The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself. 1. Introduction 2. Methods for working with reptilian viruses 3. Reptilian viruses described by virus families 3.1. Herpesviridae 3.2. Iridoviridae 3.2.1 Ranavirus 3.2.2 Erythrocytic virus 3.2.3 Iridovirus 3.3. Poxviridae 3.4. Adenoviridae 3.5. Papillomaviridae 3.6. Parvoviridae 3.7. Reoviridae 3.8. Retroviridae and inclusion body disease of Boid snakes 3.9. Arboviruses 3.9.1. Flaviviridae 3

  19. Genomic characterisation of Almpiwar virus, Harrison Dam virus and Walkabout Creek virus; three novel rhabdoviruses from northern Australia

    Directory of Open Access Journals (Sweden)

    Jane McAllister

    2014-09-01

    Full Text Available Rhabdoviridae represent a diverse group of viruses with the potential to cause disease in humans, animals and plants. Currently there are nine genera in the family; however a large number of rhabdoviruses remain unassigned. Here we characterise three novel rhabdoviruses genomes. Almpiwar virus (ALMV, isolated from skinks in northern Queensland, is the first completely sequenced rhabdovirus from squamates, with serological studies indicating multiple animal host species. Harrison Dam virus (HARDV and Walkabout Creek virus (WACV were isolated from mosquitoes in the Northern Territory and biting midges in southern Queensland respectively and their vertebrate hosts remain unknown. Serological cross-neutralisation tests with other Australian rhabdoviruses indicate that ALMV, WACV and HARDV are distinct viruses with little antigenic cross-reactivity. Next-generation sequencing revealed that all viruses encode the core proteins common to rhabdoviruses (N, P, M, G and L, plus additional ORFs between the M and G genes. HARDV also contains a small ORF between the G and L genes. Phylogenetic analysis of N and L proteins suggests that HARDV and WACV share a common lineage with the tupaviruses and Sandjimba group, whereas ALMV is a distinct and divergent virus showing no clear relationship to any rhabdovirus except the recently characterised Niahka virus (NIAV.

  20. Powassan (POW) Virus Basics

    Science.gov (United States)

    ... Health Professionals Related Topics For International Travelers Powassan Virus Disease Basics Download this fact sheet formatted for ... Virus Disease Fact Sheet (PDF) What is Powassan virus? Powassan virus is a tickborne flavivirus that is ...

  1. Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

    Energy Technology Data Exchange (ETDEWEB)

    Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Schriewer, Jill [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Evans, David H. [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Buller, R. Mark [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Barry, Michele, E-mail: michele.barry@ualberta.ca [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada)

    2014-05-15

    Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus.

  2. Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

    International Nuclear Information System (INIS)

    Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee; Schriewer, Jill; Evans, David H.; Buller, R. Mark; Barry, Michele

    2014-01-01

    Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus

  3. How Hepatitis D Virus Can Hinder the Control of Hepatitis B Virus

    NARCIS (Netherlands)

    Xiridiou, M.; Borkent-Raven, B.; Hulshof, J.; Wallinga, J.

    2009-01-01

    Background: Hepatitis D (or hepatitis delta) virus is a defective virus that relies on hepatitis B virus (HBV) for transmission; infection with hepatitis D can occur only as coinfection with HBV or superinfection of an existing HBV infection. Because of the bond between the two viruses, control

  4. 9 CFR 113.215 - Bovine Virus Diarrhea Vaccine, Killed Virus.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Bovine Virus Diarrhea Vaccine, Killed Virus. 113.215 Section 113.215 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND ANALOGOUS PRODUCTS; ORGANISMS AND VECTORS STANDARD...

  5. Influenza (Flu) Viruses

    Science.gov (United States)

    ... Types Seasonal Avian Swine Variant Pandemic Other Influenza (Flu) Viruses Language: English (US) Español Recommend on Facebook ... influenza circulate and cause illness. More Information about Flu Viruses Types of Influenza Viruses Influenza A and ...

  6. [The growth of attenuated strains of canine parvovirus, mink enteritis virus, feline panleukopenia virus, and rabies virus on various types of cell cultures].

    Science.gov (United States)

    Zuffa, T

    1987-10-01

    The growth characteristics were studied in the attenuated strains of canine parvovirus CPVA-BN 80/82, mink enteritis virus MEVA-BN 63/82 and feline panleucopenia virus FPVA-BN 110/83 on the stable feline kidney cell line FE, and in the attenuated canine distemper virus CDV-F-BN 10/83 on chicken embryo cell cultures (KEB) and cultures of the stable cell line VERO. When the FE cultures were infected with different parvoviruses in cell suspension at MOI 2-4 TKID50 per cell, the first multiplication of the intracellular virus was recorded 20 hours p. i. In the canine parvovirus, the content of intracellular and extracellular virus continued increasing parallelly until the fourth day; then, from the fourth to the sixth day, the content of extracellular virus still increased whereas that of intracellular virus fell rapidly. In the case of the mink enteritis virus the release of the virus into the culture medium continued parallelly with the production of the cellular virus until the sixth day. In the case of the feline panleucopenia virus the values concerning free virus and virus bound to cells were lower, starting from the second day p. i. When KEB or VERO cultures were infected in cell suspension with the canine distemper virus at MOI about 0.004 per 1 cell, the replicated intracellular virus was first recorded in the KEB cultures five hours after infection but in the VERO cultures only 20 hours after infection, with a timely release of the virus into the culture medium in both kinds of tissue. In the KEB and VERO cultures the highest values of infection titres were recorded on the fourth day p. i., the course of virus multiplication on the cells being parallel with its release into the culture medium.

  7. FACTORS CONSTRAINING THE PRODUCTION AND MARKETING OF PAWPAW (Carica papaya) IN EKITI STATE, SOUTHWESTERN NIGERIA

    OpenAIRE

    Agbowuro G.O

    2012-01-01

    The objective of this work is to identify and examine major factors constraining pawpaw production and marketing in Ekiti State, Southwestern Nigeria. Questionnaire schedule and personal interviews were used to collect data from ten Local Government Areas in the state. A total of 76 pawpaw farmers were randomly interviewed for this study. The study identified poor patronage in the market, poor marketing system, inadequate capital, poor price, inadequate extension services, poor transportation...

  8. Macrofungi in the lateritic scrub jungles of southwestern India

    Directory of Open Access Journals (Sweden)

    A. A. Greeshma

    2015-09-01

    Full Text Available A pilot study on macrofungi in scrub jungles (with and without fire-impact in lateritic region of southwestern coast of India was carried out.  Out of 11 species in 10 genera recovered, six and five species were confined to scrub jungle and fire-impacted scrub jungle, respectively.  An ectomycorrhizal Amanita sp. was the most frequent in scrub jungle associated with exotic (Acacia auriculiformis and A. mangium and plantation (Anacardium occidentale trees.  Based on traditional knowledge, it is a highly edible and nutritional delicacy in the coastal regions.  Astraeus odoratus was another common ectomycorrhizal fungus in native trees Hopea ponga, which was recovered from the fire-impacted scrub jungle and is possibly edible.  Edible termite mound mushroom Termitomyces striatus was also common in the fire-impacted scrub jungle.  Chlorophyllum molybdites was the most frequent mushroom in the fire-impacted scrub jungle.  

  9. Guanophilic fungi in three caves of southwestern Puerto Rico

    Directory of Open Access Journals (Sweden)

    Nieves-Rivera Angel M.

    2009-01-01

    Full Text Available Fifty species of guanophilic (bat guano-loving fungi were isolated from field-collected samples within three caves in southwesternPuerto Rico; most were mitosporic fungi (23 species. The caves studied were Cueva La Tuna (Cabo Rojo, Cueva de Malano(Sistema de Los Chorros, San Germán, and Cueva Viento (El Convento Cave-Spring System, Guayanilla-Peñuelas. The mostconspicuous fungus by far was the zygomycete Circinella umbellata (Mucorales. Circinella umbellata dominated the bat guanoincubation chambers (Petri dishes lined with sterile filter paper moistened with sterile water at ambient laboratory conditions.Nineteen species of basidiomycetes (e.g., Ganoderma cf. resinaceum, Geastrum cf. minimum, Lepiota sp., Polyporus sp., Ramariasp. and three species of ascomycetes (Hypoxylon sp., Xylaria anisopleura, and X. kegeliana were also recorded. They were foundon soil, rotting leaves, bark and rotting wood, buried in bat guano located below natural skylights or sinkholes.

  10. Norm Levels in Mine Pit Lakes in South-Western Spain

    International Nuclear Information System (INIS)

    Manjón, G.; Galván, J.; Mantero, J.; Díaz, I.; García-Tenorio, R.

    2015-01-01

    Former mining activities in a pyritic area in south-western Spain have generated mine pits in which underground water and rainwater has accumulated. The accumulated waters have produced oxidation of the pyrite and, consequently, the pit water has become acidic, causing the dissolution of metals and radionuclides of natural origin. The paper discusses the activity concentration levels of uranium isotopes and other radionuclides in water samples and sediments collected from these mine pit lakes. Tributaries of the nearby Odiel River, when crossing the mining area, show low pH values and high concentrations of uranium isotopes due to acid mine drainage. Through the analysis of several isotope activity ratios, the presence of radionuclides in the pit lakes and the influence of these radionuclides on the surrounding area and the Odiel River are evaluated. (author)

  11. Viruses of asparagus.

    Science.gov (United States)

    Tomassoli, Laura; Tiberini, Antonio; Vetten, Heinrich-Josef

    2012-01-01

    The current knowledge on viruses infecting asparagus (Asparagus officinalis) is reviewed. Over half a century, nine virus species belonging to the genera Ilarvirus, Cucumovirus, Nepovirus, Tobamovirus, Potexvirus, and Potyvirus have been found in this crop. The potyvirus Asparagus virus 1 (AV1) and the ilarvirus Asparagus virus 2 (AV2) are widespread and negatively affect the economic life of asparagus crops reducing yield and increasing the susceptibility to biotic and abiotic stress. The main properties and epidemiology of AV1 and AV2 as well as diagnostic techniques for their detection and identification are described. Minor viruses and control are briefly outlined. Copyright © 2012 Elsevier Inc. All rights reserved.

  12. Viruses and Breast Cancer

    Science.gov (United States)

    Lawson, James S.; Heng, Benjamin

    2010-01-01

    Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix. PMID:24281093

  13. Viruses and Breast Cancer

    International Nuclear Information System (INIS)

    Lawson, James S.; Heng, Benjamin

    2010-01-01

    Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix

  14. Viruses and Breast Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Lawson, James S., E-mail: james.lawson@unsw.edu.au; Heng, Benjamin [School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney (Australia)

    2010-04-30

    Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix.

  15. From disaster to sustainability: floods, changing property relations and water management in the south-western Netherlands, c. 1500-1800

    NARCIS (Netherlands)

    Cruijningen, van P.J.

    2014-01-01

    When large parts of the south-western Netherlands flooded in the fifteenth and sixteenth centuries the main cause was insufficient maintenance of the sea defences. The subsequent re-embankment of the polders resulted in changes to both soil conditions and property relations in the region. The Church

  16. "The evil virus cell": Students‘ knowledge and beliefs about viruses

    Science.gov (United States)

    Enzinger, Sonja M.; Fink, Andreas

    2017-01-01

    Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

  17. Empirical Validation of Indices for Consideration in the Revision of Recommended Senior School Financial Accounting Textbooks in Southwestern Nigeria

    Directory of Open Access Journals (Sweden)

    Oyebode Stephen Oyetoro

    2017-12-01

    Full Text Available The study determined a significant difference in teachers’ overall evaluations of six recommended Financial Accounting Textbooks in Southwestern Nigeria. It also assessed the specific evaluation parameters that account for the difference. It adopted the survey research design. The multistage sampling technique was used to select a total of 80 teachers from 64 schools from the six states in Southwestern Nigeria. Results of data collected which were analysed using the Kruskal-Wallis (H test depicted a significant difference in teachers’ overall evaluations of the textbooks. Also, results revealed that the textbooks differ significantly on the parameters of mechanics, assessment, lesson design and instructional strategy and incorporation of technology into students’ learning. The implications of these findings were discussed and the study concluded that financial accounting textbook writers and ministry of education officials at both national and state levels should give adequate consideration for these parameters in the revision of recommended financial accounting textbooks for improved effectiveness in the realization of curricular objectives in the subject.

  18. Influenza virus inactivated by artificial ribonucleases as a prospective killed virus vaccine.

    Science.gov (United States)

    Fedorova, Antonina A; Goncharova, Elena P; Kovpak, Mikhail P; Vlassov, Valentin V; Zenkova, Marina A

    2012-04-19

    The inactivation of viral particles with agents causing minimal damage to the structure of surface epitopes is a well-established approach for the production of killed virus vaccines. Here, we describe new agents for the inactivation of influenza virus, artificial ribonucleases (aRNases), which are chemical compounds capable of cleaving RNA molecules. Several aRNases were identified, exhibiting significant virucidal activity against the influenza A virus and causing a minimal effect on the affinity of monoclonal antibodies for the inactivated virus. Using a murine model of the influenza virus infection, a high protective activity of the aRNase-inactivated virus as a vaccine was demonstrated. The results of the experiments demonstrate the efficacy of novel chemical agents in the preparation of vaccines against influenza and, perhaps, against other infections caused by RNA viruses. Copyright © 2012 Elsevier Ltd. All rights reserved.

  19. [The great virus comeback].

    Science.gov (United States)

    Forterre, Patrick

    2013-01-01

    Viruses have been considered for a long time as by-products of biological evolution. This view is changing now as a result of several recent discoveries. Viral ecologists have shown that viral particles are the most abundant biological entities on our planet, whereas metagenomic analyses have revealed an unexpected abundance and diversity of viral genes in the biosphere. Comparative genomics have highlighted the uniqueness of viral sequences, in contradiction with the traditional view of viruses as pickpockets of cellular genes. On the contrary, cellular genomes, especially eukaryotic ones, turned out to be full of genes derived from viruses or related elements (plasmids, transposons, retroelements and so on). The discovery of unusual viruses infecting archaea has shown that the viral world is much more diverse than previously thought, ruining the traditional dichotomy between bacteriophages and viruses. Finally, the discovery of giant viruses has blurred the traditional image of viruses as small entities. Furthermore, essential clues on virus history have been obtained in the last ten years. In particular, structural analyses of capsid proteins have uncovered deeply rooted homologies between viruses infecting different cellular domains, suggesting that viruses originated before the last universal common ancestor (LUCA). These studies have shown that several lineages of viruses originated independently, i.e., viruses are polyphyletic. From the time of LUCA, viruses have coevolved with their hosts, and viral lineages can be viewed as lianas wrapping around the trunk, branches and leaves of the tree of life. Although viruses are very diverse, with genomes encoding from one to more than one thousand proteins, they can all be simply defined as organisms producing virions. Virions themselves can be defined as infectious particles made of at least one protein associated with the viral nucleic acid, endowed with the capability to protect the viral genome and ensure its

  20. Protoplasts and plant viruses

    International Nuclear Information System (INIS)

    Murakishi, H.; Lesney, M.S.; Carlson, P.

    1984-01-01

    The use of protoplasts in the study of plant viruses has attracted considerable attention since its inception in the late 1960s. This article is an attempt to assess the current status of protoplasts (primarily) and all cell cultures (in some instances) in studies of virus infection, virus replication, cytopathology, cross-protection, virus resistance, and the use of in vitro methods and genetic engineering to recover virus-resistant plants. These areas of study proved difficult to do entirely with whole plants or plant parts. However, because protoplasts could be synchronously infected with virus, they provided a valuable alternative means of following biochemical and cytological events in relation to the virus growth cycle in a more precise manner than previously possible

  1. Hepatitis A Virus and Hepatitis E Virus: Emerging and Re-Emerging Enterically Transmitted Hepatitis Viruses.

    Science.gov (United States)

    Lemon, Stanley M; Walker, Christopher M

    2018-05-07

    Over the past two decades, progress in understanding human infections with hepatitis A virus (HAV) and hepatitis E virus (HEV) has been eclipsed by the priority of combating persistent hepatitis B virus (HBV) and hepatitis C virus (HCV) infections. During that time, the global burden of liver disease caused by enteric hepatitis viruses has not abated. Because of vaccines, hepatitis A has become increasingly a disease of adults instead of early childhood in many regions of the world, resulting in an age-related shift toward more severe disease. HEV has remained endemic in many developing countries, and in well-developed, economically advanced countries it is now recognized as a cause of chronic, progressive liver disease in individuals with compromised immunity. The goal of this collection of articles is to review recent progress and to shine a bright light on gaps in our understanding of how these viruses replicate, cause disease, interact with the liver and host immune system, and are transmitted, along with prospects for improved control in human populations. Renewed efforts to study and compare HAV and HEV biology in humans and animal models have high potential to enhance our understanding of host-pathogen balance in the liver, and may contribute ultimately to the control of other infectious diseases of the liver. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

  2. Evolutionary ecology of virus emergence.

    Science.gov (United States)

    Dennehy, John J

    2017-02-01

    The cross-species transmission of viruses into new host populations, termed virus emergence, is a significant issue in public health, agriculture, wildlife management, and related fields. Virus emergence requires overlap between host populations, alterations in virus genetics to permit infection of new hosts, and adaptation to novel hosts such that between-host transmission is sustainable, all of which are the purview of the fields of ecology and evolution. A firm understanding of the ecology of viruses and how they evolve is required for understanding how and why viruses emerge. In this paper, I address the evolutionary mechanisms of virus emergence and how they relate to virus ecology. I argue that, while virus acquisition of the ability to infect new hosts is not difficult, limited evolutionary trajectories to sustained virus between-host transmission and the combined effects of mutational meltdown, bottlenecking, demographic stochasticity, density dependence, and genetic erosion in ecological sinks limit most emergence events to dead-end spillover infections. Despite the relative rarity of pandemic emerging viruses, the potential of viruses to search evolutionary space and find means to spread epidemically and the consequences of pandemic viruses that do emerge necessitate sustained attention to virus research, surveillance, prophylaxis, and treatment. © 2016 New York Academy of Sciences.

  3. A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.

    Science.gov (United States)

    Rensen, Elena Ilka; Mochizuki, Tomohiro; Quemin, Emmanuelle; Schouten, Stefan; Krupovic, Mart; Prangishvili, David

    2016-03-01

    Viruses package their genetic material in diverse ways. Most known strategies include encapsulation of nucleic acids into spherical or filamentous virions with icosahedral or helical symmetry, respectively. Filamentous viruses with dsDNA genomes are currently associated exclusively with Archaea. Here, we describe a filamentous hyperthermophilic archaeal virus, Pyrobaculum filamentous virus 1 (PFV1), with a type of virion organization not previously observed in DNA viruses. The PFV1 virion, 400 ± 20 × 32 ± 3 nm, contains an envelope and an inner core consisting of two structural units: a rod-shaped helical nucleocapsid formed of two 14-kDa major virion proteins and a nucleocapsid-encompassing protein sheath composed of a single major virion protein of 18 kDa. The virion organization of PFV1 is superficially similar to that of negative-sense RNA viruses of the family Filoviridae, including Ebola virus and Marburg virus. The linear dsDNA of PFV1 carries 17,714 bp, including 60-bp-long terminal inverted repeats, and contains 39 predicted ORFs, most of which do not show similarities to sequences in public databases. PFV1 is a lytic virus that completely disrupts the host cell membrane at the end of the infection cycle.

  4. DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

    OpenAIRE

    Július Rozák; Zdenka Gálová

    2013-01-01

    The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen a...

  5. The influence of current and future climate on the spatial distribution of coccidioidomycosis in the southwestern United States

    Science.gov (United States)

    Gorris, M. E.; Hoffman, F. M.; Zender, C. S.; Treseder, K. K.; Randerson, J. T.

    2017-12-01

    Coccidioidomycosis, otherwise known as valley fever, is an infectious fungal disease currently endemic to the southwestern U.S. The magnitude, spatial distribution, and seasonality of valley fever incidence is shaped by variations in regional climate. As such, climate change may cause new communities to become at risk for contracting this disease. Humans contract valley fever by inhaling fungal spores of the genus Coccidioides. Coccidioides grow in the soil as a mycelium, and when stressed, autolyze into spores 2-5 µm in length. Spores can become airborne from any natural or anthropogenic soil disturbance, which can be exacerbated by dry soil conditions. Understanding the relationship between climate and valley fever incidence is critical for future disease risk management. We explored several multivariate techniques to create a predictive model of county-level valley fever incidence throughout the southwestern U.S., including Arizona, California, New Mexico, Nevada, and Utah. We incorporated surface air temperature, precipitation, soil moisture, surface dust concentrations, leaf area index, and the amount of agricultural land, all of which influence valley fever incidence. A log-linear regression model that incorporated surface air temperature, soil moisture, surface dust concentration, and the amount of agricultural land explained 34% of the county-level variance in annual average valley fever incidence. We used this model to predict valley fever incidence for the Representative Concentration Pathway 8.5 using simulation output from the Community Earth System Model. In our analysis, we describe how regional hotspots of valley fever incidence may shift with sustained warming and drying in the southwestern U.S. Our predictive model of valley fever incidence may help mitigate future health impacts of valley fever by informing health officials and policy makers of the climate conditions suitable for disease outbreak.

  6. Drought-induced vegetation stress in southwestern North America

    International Nuclear Information System (INIS)

    Zhang Xiaoyang; Goldberg, Mitchell; Tarpley, Dan; Kogan, Felix; Yu Yunyue; Friedl, Mark A; Morisette, Jeffrey

    2010-01-01

    Trends towards earlier greenup and increased average greenness have been widely reported in both humid and dry ecosystems. By analyzing NOAA (National Oceanic and Atmospheric Administration) AVHRR (Advanced Very High Resolution Radiometer) data from 1982 to 2007, we report complex trends in both the growing season amplitude and seasonally integrated vegetation greenness in southwestern North America and further highlight regions consistently experiencing drought stress. In particular, greenness measurements from 1982 to 2007 show an increasing trend in grasslands but a decreasing trend in shrublands. However, vegetation greenness in this period has experienced a strong cycle, increasing from 1982 to 1993 but decreasing from 1993 to 2007. The significant decrease during the last decade has reduced vegetation greenness by 6% in shrublands and 13% in grasslands (16% and 21%, respectively, in the severe drought years). The greenness cycle correlates to both annual precipitation and dry season length derived from NOAA North America Regional Reanalysis data. If drought events continue as predicted by climate models, they will exacerbate ecosystem degradation and reduce carbon uptake.

  7. Functional properties of Virus-Encoded and Virus-Regulated 7TM Receptors

    DEFF Research Database (Denmark)

    Spiess, Katja; Rosenkilde, Mette Marie

    2014-01-01

    During co-evolution with their hosts, viruses have developed several survival strategies that involve exploitation of 7TM receptors. These include virus-encoded 7TM receptors and ligands and viral regulation of endogenous receptors. Many functional properties have been ascribed to virus-exploited...

  8. Airborne Detection of H5N8 Highly Pathogenic Avian Influenza Virus Genome in Poultry Farms, France.

    Science.gov (United States)

    Scoizec, Axelle; Niqueux, Eric; Thomas, Rodolphe; Daniel, Patrick; Schmitz, Audrey; Le Bouquin, Sophie

    2018-01-01

    In southwestern France, during the winter of 2016-2017, the rapid spread of highly pathogenic avian influenza H5N8 outbreaks despite the implementation of routine control measures, raised the question about the potential role of airborne transmission in viral spread. As a first step to investigate the plausibility of that transmission, air samples were collected inside, outside and downwind from infected duck and chicken facilities. H5 avian influenza virus RNA was detected in all samples collected inside poultry houses, at external exhaust fans and at 5 m distance from poultry houses. For three of the five flocks studied, in the sample collected at 50-110 m distance, viral genomic RNA was detected. The measured viral air concentrations ranged between 4.3 and 6.4 log 10 RNA copies per m 3 , and their geometric mean decreased from external exhaust fans to the downwind measurement point. These findings are in accordance with the possibility of airborne transmission and question the procedures for outbreak depopulation.

  9. Airborne Detection of H5N8 Highly Pathogenic Avian Influenza Virus Genome in Poultry Farms, France

    Directory of Open Access Journals (Sweden)

    Axelle Scoizec

    2018-02-01

    Full Text Available In southwestern France, during the winter of 2016–2017, the rapid spread of highly pathogenic avian influenza H5N8 outbreaks despite the implementation of routine control measures, raised the question about the potential role of airborne transmission in viral spread. As a first step to investigate the plausibility of that transmission, air samples were collected inside, outside and downwind from infected duck and chicken facilities. H5 avian influenza virus RNA was detected in all samples collected inside poultry houses, at external exhaust fans and at 5 m distance from poultry houses. For three of the five flocks studied, in the sample collected at 50–110 m distance, viral genomic RNA was detected. The measured viral air concentrations ranged between 4.3 and 6.4 log10 RNA copies per m3, and their geometric mean decreased from external exhaust fans to the downwind measurement point. These findings are in accordance with the possibility of airborne transmission and question the procedures for outbreak depopulation.

  10. Modeled Sources, Transport, and Accumulation of Dissolved Solids in Water Resources of the Southwestern United States.

    Science.gov (United States)

    Anning, David W

    2011-10-01

    Information on important source areas for dissolved solids in streams of the southwestern United States, the relative share of deliveries of dissolved solids to streams from natural and human sources, and the potential for salt accumulation in soil or groundwater was developed using a SPAtially Referenced Regressions On Watershed attributes model. Predicted area-normalized reach-catchment delivery rates of dissolved solids to streams ranged from Salton Sea accounting unit.

  11. The extreme 2014 flood in south-western Amazon basin: the role of tropical-subtropical South Atlantic SST gradient

    International Nuclear Information System (INIS)

    Espinoza, Jhan Carlo; Marengo, José Antonio; Ronchail, Josyane; Carpio, Jorge Molina; Flores, Luís Noriega; Guyot, Jean Loup

    2014-01-01

    Unprecedented wet conditions are reported in the 2014 summer (December–March) in South-western Amazon, with rainfall about 100% above normal. Discharge in the Madeira River (the main southern Amazon tributary) has been 74% higher than normal (58 000 m 3 s −1 ) at Porto Velho and 380% (25 000 m 3 s −1 ) at Rurrenabaque, at the exit of the Andes in summer, while levels of the Rio Negro at Manaus were 29.47 m in June 2014, corresponding to the fifth highest record during the 113 years record of the Rio Negro. While previous floods in Amazonia have been related to La Niña and/or warmer than normal tropical South Atlantic, the 2014 rainfall and flood anomalies are associated with warm condition in the western Pacific-Indian Ocean and with an exceptionally warm Subtropical South Atlantic. Our results suggest that the tropical and subtropical South Atlantic SST gradient is a main driver for moisture transport from the Atlantic toward south-western Amazon, and this became exceptionally intense during summer of 2014. (letter)

  12. A new species of Leptadenia (Apocynaceae) and two other new records from southwestern Saudi Arabia

    Science.gov (United States)

    Masrahi, Yahya S.

    2015-01-01

    Leptadenia jazanica Y. Masrahi from the province of Jazan, southwestern Saudi Arabia is described as a new species and illustrated. The species differs from the other known nearest species of the genus, Leptadenia pyrotechnica, by decumbent to scrambling habit of stems and persistent leaves. In the same province also two new records belonging to the genera Canavalia (Fabaceae) and Craterostigma (Scrophulariaceae) were collected; they were identified as Canavalia virosa (Roxb.) Wight & Arn. and Craterostigma plantagineum Hochst. PMID:26288569

  13. Electron microscopic identification of Zinga virus as a strain of Rift Valley fever virus.

    Science.gov (United States)

    Olaleye, O D; Baigent, C L; Mueller, G; Tomori, O; Schmitz, H

    1992-01-01

    Electron microscopic examination of a negatively stained suspension of Zinga virus showed particles 90-100 nm in diameter, enveloped with spikes 12-20 nm in length and 5 nm in diameter. Further identification of the virus by immune electron microscopy showed the reactivity of human Rift Valley fever virus-positive serum with Zinga virus. Results of this study are in agreement with earlier reports that Zinga virus is a strain of Rift Valley fever virus.

  14. Nonhuman Primate Models of Hepatitis A Virus and Hepatitis E Virus Infections.

    Science.gov (United States)

    Lanford, Robert E; Walker, Christopher M; Lemon, Stanley M

    2018-04-23

    Although phylogenetically unrelated, human hepatitis viruses share an exclusive or near exclusive tropism for replication in differentiated hepatocytes. This narrow tissue tropism may contribute to the restriction of the host ranges of these viruses to relatively few host species, mostly nonhuman primates. Nonhuman primate models thus figure prominently in our current understanding of the replication and pathogenesis of these viruses, including the enterically transmitted hepatitis A virus (HAV) and hepatitis E virus (HEV), and have also played major roles in vaccine development. This review draws comparisons of HAV and HEV infection from studies conducted in nonhuman primates, and describes how such studies have contributed to our current understanding of the biology of these viruses. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

  15. Zika Virus

    Science.gov (United States)

    ... Funding CDC Activities For Healthcare Providers Clinical Evaluation & Disease Sexual Transmission HIV Infection & Zika Virus Testing for Zika Test Specimens – At Time of Birth Diagnostic Tests Understanding Zika Virus Test Results ...

  16. Hepatitis C virus infection in the human immunodeficiency virus infected patient

    DEFF Research Database (Denmark)

    Clausen, Louise Nygaard; Lundbo, Lene Fogt; Benfield, Thomas

    2014-01-01

    Human immunodeficiency virus (HIV) and hepatitis C virus (HCV) share the same transmission routes; therefore, coinfection is frequent. An estimated 5-10 million individuals alone in the western world are infected with both viruses. The majority of people acquire HCV by injection drug use and...

  17. Immunological responses against human papilloma virus and human papilloma virus induced laryngeal cancer.

    Science.gov (United States)

    Chitose, Shun-ichi; Sakazaki, T; Ono, T; Kurita, T; Mihashi, H; Nakashima, T

    2010-06-01

    This study aimed to clarify the local immune status in the larynx in the presence of infection or carcinogenesis associated with human papilloma virus. Cytological samples (for human papilloma virus detection) and laryngeal secretions (for immunoglobulin assessment) were obtained from 31 patients with laryngeal disease, during microscopic laryngeal surgery. On histological examination, 12 patients had squamous cell carcinoma, four had laryngeal papilloma and 15 had other benign laryngeal disease. Cytological samples were tested for human papilloma virus DNA using the Hybrid Capture 2 assay. High risk human papilloma virus DNA was detected in 25 per cent of patients (three of 12) with laryngeal cancer. Low risk human papilloma virus DNA was detected only in three laryngeal papilloma patients. The mean laryngeal secretion concentrations of immunoglobulins M, G and A and secretory immunoglobulin A in human papilloma virus DNA positive patients were more than twice those in human papilloma virus DNA negative patients. A statistically significant difference was observed between the secretory immunoglobulin A concentrations in the two groups. Patients with laryngeal cancer had higher laryngeal secretion concentrations of each immunoglobulin type, compared with patients with benign laryngeal disease. The study assessed the mean laryngeal secretion concentrations of each immunoglobulin type in the 12 laryngeal cancer patients, comparing human papilloma virus DNA positive patients (n = 3) and human papilloma virus DNA negative patients (n = 9); the mean concentrations of immunoglobulins M, G and A and secretory immunoglobulin A tended to be greater in human papilloma virus DNA positive cancer patients, compared with human papilloma virus DNA negative cancer patients. These results suggest that the local laryngeal immune response is activated by infection or carcinogenesis due to human papilloma virus. The findings strongly suggest that secretory IgA has inhibitory activity

  18. Invasive vascular plant species of oxbow lakes in south-western Poland

    Directory of Open Access Journals (Sweden)

    Spałek Krzysztof

    2015-06-01

    Full Text Available Natural water reservoirs are very valuable floristic sites in south-western Poland. Among them, the most important for the preservation of biodiversity of flora are oxbow lakes. The long-term process of human pressure on habitats of this type caused disturbances of their biological balance. Changes in the water regime, industrial development and chemisation of agriculture, especially in the period of the last two hundred years, led to systematic disappearances of localities of many plant species connected with rare habitats and also to the appearance of numerous invasive plant species. They are: Azolla filiculoides, Echinocystis lobata, Erechtites hieraciifolia, Impatiens glandulifera, I. parviflora, Reynoutria japonica, Solidago canadensis, S. gigantea and S. graminifolia. Field works were conducted in years 2005-2012.

  19. Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.

    Science.gov (United States)

    He, Tianliang; Li, Hongyun; Zhang, Xiaobo

    2017-07-11

    Viruses are believed to be responsible for the mortality of host organisms. However, some recent investigations reveal that viruses may be essential for host survival. To date, it remains unclear whether viruses are beneficial or harmful to their hosts. To reveal the roles of viruses in the virus-host interactions, viromes and microbiomes of sediment samples from three deep-sea hydrothermal vents were explored in this study. To exclude the influence of exogenous DNAs on viromes, the virus particles were purified with nuclease (DNase I and RNase A) treatments and cesium chloride density gradient centrifugation. The metagenomic analysis of viromes without exogenous DNA contamination and microbiomes of vent samples indicated that viruses had compensation effects on the metabolisms of their host microorganisms. Viral genes not only participated in most of the microbial metabolic pathways but also formed branched pathways in microbial metabolisms, including pyrimidine metabolism; alanine, aspartate, and glutamate metabolism; nitrogen metabolism and assimilation pathways of the two-component system; selenocompound metabolism; aminoacyl-tRNA biosynthesis; and amino sugar and nucleotide sugar metabolism. As is well known, deep-sea hydrothermal vent ecosystems exist in relatively isolated environments which are barely influenced by other ecosystems. The metabolic compensation of hosts mediated by viruses might represent a very important aspect of virus-host interactions. IMPORTANCE Viruses are the most abundant biological entities in the oceans and have very important roles in regulating microbial community structure and biogeochemical cycles. The relationship between virus and host microbes is broadly thought to be that of predator and prey. Viruses can lyse host cells to control microbial population sizes and affect community structures of hosts by killing specific microbes. However, viruses also influence their hosts through manipulation of bacterial metabolism. We found

  20. Available data support protection of the Southwestern Willow Flycatcher under the Endangered Species Act

    Science.gov (United States)

    Theimer, Tad C.; Smith, Aaron D.; Mahoney, Sean M.; Ironside, Kirsten E.

    2016-01-01

    Zink (2015) argued there was no evidence for genetic, morphological, or ecological differentiation between the federally endangered Southwestern Willow Flycatcher (Empidonax traillii extimus) and other Willow Flycatcher subspecies. Using the same data, we show there is a step-cline in both the frequency of a mtDNA haplotype and in plumage variation roughly concordant with the currently recognized boundary between E. t. extimus and E. t adastus, the subspecies with which it shares the longest common boundary. The geographical pattern of plumage variation is also concordant with previous song analyses differentiating those 2 subspecies and identified birds in one low-latitude, high-elevation site in Arizona as the northern subspecies. We also demonstrate that the ecological niche modeling approach used by Zink yields the same result whether applied to the 2 flycatcher subspecies or to 2 unrelated species, E. t. extimus and Yellow Warbler (Setophaga petechia). As a result, any interpretation of those results as evidence for lack of ecological niche differentiation among Willow Flycatcher subspecies would also indicate no differentiation among recognized species and would therefore be an inappropriate standard for delineating subspecies. We agree that many analytical techniques now available to examine genetic, morphological, and ecological differentiation would improve our understanding of the distinctness (or lack thereof) of Willow Flycatcher subspecies, but we argue that currently available evidence supports protection of the Southwestern Willow Flycatcher under the Endangered Species Act.

  1. Presence of Antibiotics in Shallow Groundwater in the Northern and Southwestern Regions of China.

    Science.gov (United States)

    Chen, Liang; Lang, Hang; Liu, Fei; Jin, Song; Yan, Tao

    2018-05-01

    Antibiotics are widely used, and there is a serious concern about its adverse impacts on the environment and human health. To our knowledge, prior to this work, there was no evidence of the potential presence of antibiotics in groundwater in China, despite populous speculations. This study reported the detection of 35 target antibiotics of 6 groups (chloramphenicois, lincosamides, marcrolides, quinolones, sulfonamides, and tetracyclines), in shallow groundwater samples collected in northern and southwestern China. Thirty-four of thirty-five target antibiotics were detected in the groundwater samples; 73 of 74 monitoring wells contained at least one antibiotic; and at least two antibiotics were detected in 72 of the 74 wells. Ofloxacin (1199.7 ng/L), lincomycin (860.7 ng/L), and norfloxacin (441.9 ng/L) as well as antibiotics with the highest detection frequency such as sulfapyridine (70%), norfloxacin (69%), and lincomycin (64%) were detected at elevated concentrations. The highest detection frequency and concentration of lincosamides were observed in those groundwater samples, but no clear distribution patterns were observed for the six antibiotic groups. Moreover, shallow groundwater in southwestern China seemed to contain most antibiotics, likely due to the high antibiotics discharge and frequent exchange of groundwater with surface matrices. The findings from this work suggest that groundwater in China has been widely contaminated by antibiotics, and presumably other pharmaceutical compounds that have not been investigated to date. © 2017, National Ground Water Association.

  2. Empirical Validation of Indices for Consideration in the Revision of Recommended Senior School Financial Accounting Textbooks in Southwestern Nigeria

    Science.gov (United States)

    Oyetoro, Oyebode Stephen; Ojo, Oloyede Ezekiel

    2017-01-01

    The study determined a significant difference in teachers' overall evaluations of six recommended Financial Accounting Textbooks in Southwestern Nigeria. It also assessed the specific evaluation parameters that account for the difference. It adopted the survey research design. The multistage sampling technique was used to select a total of 80…

  3. Lithospheric Strength Beneath the Zagros Mountains of Southwestern Iran

    Science.gov (United States)

    Adams, A. N.; Nyblade, A.; Brazier, R.; Rodgers, A.; Al-Amri, A.

    2006-05-01

    The Zagros Mountain Belt of southwestern Iran is among the most seismically active mountain belts in the world. Early seismic studies of this area found that the lithosphere underlying the Zagros Mountains follows the "jelly sandwich" model, having a strong upper crust and a strong lithospheric mantle, separated by a weak lower crust. More recent studies, which analyzed earthquakes originating within the Zagros Mountains that were recorded at teleseismic distances, however, found that these earthquakes occurred only within the upper crust, thus indicating that the strength of the Zagros Mountains' lithosphere lies only within the upper crust, in accordance with the "creme brulee" lithospheric model. Preliminary analysis of regionally recorded earthquakes that originated within the Zagros Mountains is presented here. Using earthquakes recorded at regional distances will allow the analysis of a larger dataset than has been used in previous studies. Preliminary results show earthquakes occurring throughout the crust and possibly extending into the upper mantle.

  4. Uranium favorability of southwestern Oklahoma and north-central Texas

    International Nuclear Information System (INIS)

    Stanton, G.D.; Brogdon, L.D.; Quick, J.V.; Thomas, N.G.; Martin, T.S.

    1977-10-01

    Results are presented of a project to identify and delineate units and (or) facies that are favorable for uranium in the Upper Pennsylvanian and Lower Permian strata of north-central Texas and southwestern Oklahoma. To aid in this evaluation, an assessment of the probable uranium rocks (Wichita and Arbuckle Mountains) was necessary. Surface samples were collected from igneous and sedimentary rocks. Stream-sediment samples were also collected. However, the main emphasis of the investigation of the sedimentary units was on the identification of sedimentary facies trends in the subsurface and an evaluation of the uranium favorability within units studied. The area investigated centers along the Red River, the boundary between Texas and Oklahoma. The project area encompasses approximately 17,000 sq. mi. It includes all or parts of Cooke, Montague, Clay, Wichita, Wilbarger, Hardeman, Baylor, Knox, and Archer Counties in Texas and Love, Jefferson, Cotton, Tillman, Jackson, Stephens, Carter, Comanche, Harmon, and Greer Counties in Oklahoma

  5. Viruses in reptiles.

    Science.gov (United States)

    Ariel, Ellen

    2011-09-21

    The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself.

  6. A REVIEW ON ZIKA VIRUS (ZIKV) -A DREADFUL MEMBER OF THE VIRUS FAMILY FLAVIVIRIDAE

    OpenAIRE

    1Rafiya Begum, 2 Raafia Aseena, 3Nuha Rasheed and 4 Abdul Saleem Mohammad

    2017-01-01

    Research on zika virus examine the virus that is spread to humans through a mosquito bite, with symptoms that include fever, rash, joint pain, and conjuctivities. For most people zika virus is not necessarily anything to worry, as it is not fatal and symptoms are generally mild for period up to a week. Hospitalization because of zika virus is almost always not necessary. However, the zika virus can be extremely dangerous to pregnant womes. Key Words: Zika, virus, transmission, fatal, flavivir...

  7. Water use and supply concerns for utility-scale solar projects in the Southwestern United States.

    Energy Technology Data Exchange (ETDEWEB)

    Klise, Geoffrey Taylor; Tidwell, Vincent Carroll; Reno, Marissa Devan; Moreland, Barbara Denise.; Zemlick, Katie M.; Macknick, Jordan

    2013-07-01

    As large utility-scale solar photovoltaic (PV) and concentrating solar power (CSP) facilities are currently being built and planned for locations in the U.S. with the greatest solar resource potential, an understanding of water use for construction and operations is needed as siting tends to target locations with low natural rainfall and where most existing freshwater is already appropriated. Using methods outlined by the Bureau of Land Management (BLM) to determine water used in designated solar energy zones (SEZs) for construction and operations & maintenance, an estimate of water used over the lifetime at the solar power plant is determined and applied to each watershed in six Southwestern states. Results indicate that that PV systems overall use little water, though construction usage is high compared to O&M water use over the lifetime of the facility. Also noted is a transition being made from wet cooled to dry cooled CSP facilities that will significantly reduce operational water use at these facilities. Using these water use factors, estimates of future water demand for current and planned solar development was made. In efforts to determine where water could be a limiting factor in solar energy development, water availability, cost, and projected future competing demands were mapped for the six Southwestern states. Ten watersheds, 9 in California, and one in New Mexico were identified as being of particular concern because of limited water availability.

  8. Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean

    Science.gov (United States)

    Medina-Silva, Renata; de Oliveira, Rafael R.; Pivel, Maria A. G.; Borges, Luiz G. A.; Simão, Taiz L. L.; Pereira, Leandro M.; Trindade, Fernanda J.; Augustin, Adolpho H.; Valdez, Fernanda P.; Eizirik, Eduardo; Utz, Laura R. P.; Groposo, Claudia; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M. M.; Giongo, Adriana

    2018-02-01

    Conspicuous physicochemical vertical stratification in the deep sea is one of the main forces driving microbial diversity in the oceans. Oxygen and sunlight availability are key factors promoting microbial diversity throughout the water column. Ocean currents also play a major role in the physicochemical stratification, carrying oxygen down to deeper zones as well as moving deeper water masses up towards shallower depths. Water samples within a 50-km radius in a pockmark location of the southwestern Atlantic Ocean were collected and the prokaryotic communities from different water depths - chlorophyll maximum, oxygen minimum and deep-sea bottom (down to 1355 m) - were described. At phylum level, Proteobacteria were the most frequent in all water depths, Cyanobacteria were statistically more frequent in chlorophyll maximum zone, while Thaumarchaeota were significantly more abundant in both oxygen minimum and bottom waters. The most frequent microorganism in the chlorophyll maximum and oxygen minimum zones was a Pelagibacteraceae operational taxonomic unit (OTU). At the bottom, the most abundant genus was the archaeon Nitrosopumilus. Beta diversity analysis of the 16S rRNA gene sequencing data uncovered in this study shows high spatial heterogeneity among water zones communities. Our data brings important contribution for the characterisation of oceanic microbial diversity, as it consists of the first description of prokaryotic communities occurring in different oceanic water zones in the southwestern Atlantic Ocean.

  9. Stable carbon isotopic assessment of prehistoric diets in the south-western Cape, Cape Town, South Africa

    Energy Technology Data Exchange (ETDEWEB)

    Sealy, J C

    1984-01-01

    This thesis consists of a stable carbon isotopic assessment of the diets of the Holocene human inhabitants of the south-western Cape, South-Africa. Samples of the foods these people ate were collected from each of the four major physiographic zones in the area, and their /sup 13/C//sup 12/C ratios measured. A total of more than 200 such analyses enabled the estimation of the average delta /sup 13/C values of prehistoric human diets in each zone. This information is used to interpret delta /sup 13/C measurements on a series of archaeological human skeletons. The results are consistent with a model of prehistoric subsistence behaviour in which people living at the coast made intensive use of marine food resources throughout the Holocene, consuming such a large proportion of these foods that they must have spent much, if not all of their time at the coast. Inland skeletons reflect an almost entirely terrestrial diet. These results contradict hypotheses about seasonal population movements between the coast and the interior generated from excavated archaeological material. Considerable changes in many of our current views of the Late Stone Age of the south-western Cape will have to be made in order to accommodate these data.

  10. Type C virus activation in nontransformed mouse cells by uv-irradiated herpes simplex virus

    Energy Technology Data Exchange (ETDEWEB)

    Hampar, B. (National Institutes of Health, Bethesda, MD); Hatanaka, M.; Aulakh, G.; Derge, J.G.; Lee, L.; Showalter, S.

    1977-02-01

    Infection of nontransformed mouse cells with uv-irradiated herpes simplex virus (uv-HSV) resulted in the activation of an endogenous xenotropic (x-tropic) type C virus. Synthesis of type C virus persisted for only a few days, with most of the virus remaining cell associated. The levels of type C virus activated by uv-HSV varied depending on the multiplicity of infection (m.o.i.) and the uv dose. At low uv doses, where cell killing occurred, little or no type C virus synthesis was observed. Maximum levels of type C virus synthesis were observed with the minimum uv dose which eliminated cell killing by HSV. Synthesis of type C virus, albeit at lower levels, was still observed at uv doses beyond those required to prevent cell killing.

  11. Type C virus activation in nontransformed mouse cells by uv-irradiated herpes simplex virus

    International Nuclear Information System (INIS)

    Hampar, B.; Hatanaka, M.; Aulakh, G.; Derge, J.G.; Lee, L.; Showalter, S.

    1977-01-01

    Infection of nontransformed mouse cells with uv-irradiated herpes simplex virus (uv-HSV) resulted in the activation of an endogenous xenotropic (x-tropic) type C virus. Synthesis of type C virus persisted for only a few days, with most of the virus remaining cell associated. The levels of type C virus activated by uv-HSV varied depending on the multiplicity of infection (m.o.i.) and the uv dose. At low uv doses, where cell killing occurred, little or no type C virus synthesis was observed. Maximum levels of type C virus synthesis were observed with the minimum uv dose which eliminated cell killing by HSV. Synthesis of type C virus, albeit at lower levels, was still observed at uv doses beyond those required to prevent cell killing

  12. Chikungunya virus

    Science.gov (United States)

    Chikungunya virus infection; Chikungunya ... Where Chikungunya is Found Before 2013, the virus was found in Africa, Asia, Europe, and the Indian and Pacific oceans. In late 2013, outbreaks occurred for the first time in the ...

  13. Perinatal hepatitis B virus detection by hepatitis B virus-DNA analysis.

    OpenAIRE

    De Virgiliis, S; Frau, F; Sanna, G; Turco, M P; Figus, A L; Cornacchia, G; Cao, A

    1985-01-01

    Maternal transmission of hepatitis B virus infection in relation to the hepatitis B e antigen/antibody system and serum hepatitis B virus-DNA were evaluated. Results indicate that hepatitis B virus-DNA analysis can identify hepatitis B serum antigen positive mothers who may transmit infection to their offspring.

  14. Virus like particle-based vaccines against emerging infectious disease viruses.

    Science.gov (United States)

    Liu, Jinliang; Dai, Shiyu; Wang, Manli; Hu, Zhihong; Wang, Hualin; Deng, Fei

    2016-08-01

    Emerging infectious diseases are major threats to human health. Most severe viral disease outbreaks occur in developing regions where health conditions are poor. With increased international travel and business, the possibility of eventually transmitting infectious viruses between different countries is increasing. The most effective approach in preventing viral diseases is vaccination. However, vaccines are not currently available for numerous viral diseases. Virus-like particles (VLPs) are engineered vaccine candidates that have been studied for decades. VLPs are constructed by viral protein expression in various expression systems that promote the selfassembly of proteins into structures resembling virus particles. VLPs have antigenicity similar to that of the native virus, but are non-infectious as they lack key viral genetic material. VLP vaccines have attracted considerable research interest because they offer several advantages over traditional vaccines. Studies have shown that VLP vaccines can stimulate both humoral and cellular immune responses, which may offer effective antiviral protection. Here we review recent developments with VLP-based vaccines for several highly virulent emerging or re-emerging infectious diseases. The infectious agents discussed include RNA viruses from different virus families, such as the Arenaviridae, Bunyaviridae, Caliciviridae, Coronaviridae, Filoviridae, Flaviviridae, Orthomyxoviridae, Paramyxoviridae, and Togaviridae families.

  15. Immunogenicity of a modified-live virus vaccine against bovine viral diarrhea virus types 1 and 2, infectious bovine rhinotracheitis virus, bovine parainfluenza-3 virus, and bovine respiratory syncytial virus when administered intranasally in young calves.

    Science.gov (United States)

    Xue, Wenzhi; Ellis, John; Mattick, Debra; Smith, Linda; Brady, Ryan; Trigo, Emilio

    2010-05-14

    The immunogenicity of an intranasally-administered modified-live virus (MLV) vaccine in 3-8 day old calves was evaluated against bovine viral diarrhea virus (BVDV) types 1 and 2, infectious bovine rhinotracheitis (IBR) virus, parainfluenza-3 (PI-3) virus and bovine respiratory syncytial virus (BRSV). Calves were intranasally vaccinated with a single dose of a multivalent MLV vaccine and were challenged with one of the respective viruses three to four weeks post-vaccination in five separate studies. There was significant sparing of diseases in calves intranasally vaccinated with the MLV vaccine, as indicated by significantly fewer clinical signs, lower rectal temperatures, reduced viral shedding, greater white blood cell and platelet counts, and less severe pulmonary lesions than control animals. This was the first MLV combination vaccine to demonstrate efficacy against BVDV types 1 and 2, IBR, PI-3 and BRSV in calves 3-8 days of age. Copyright 2010 Elsevier Ltd. All rights reserved.

  16. Ocular Tropism of Respiratory Viruses

    Science.gov (United States)

    Rota, Paul A.; Tumpey, Terrence M.

    2013-01-01

    SUMMARY Respiratory viruses (including adenovirus, influenza virus, respiratory syncytial virus, coronavirus, and rhinovirus) cause a broad spectrum of disease in humans, ranging from mild influenza-like symptoms to acute respiratory failure. While species D adenoviruses and subtype H7 influenza viruses are known to possess an ocular tropism, documented human ocular disease has been reported following infection with all principal respiratory viruses. In this review, we describe the anatomical proximity and cellular receptor distribution between ocular and respiratory tissues. All major respiratory viruses and their association with human ocular disease are discussed. Research utilizing in vitro and in vivo models to study the ability of respiratory viruses to use the eye as a portal of entry as well as a primary site of virus replication is highlighted. Identification of shared receptor-binding preferences, host responses, and laboratory modeling protocols among these viruses provides a needed bridge between clinical and laboratory studies of virus tropism. PMID:23471620

  17. Investigation into the value of the seismic methods in delineating structure in southwestern Ontario

    Energy Technology Data Exchange (ETDEWEB)

    Hodgson, J H

    1948-12-31

    This paper constitutes the final report on a project that investigated the possibilities of seismic methods to delineate Palaeozoic structures in areas of hydrocarbon exploration in south-western Ontario. It begins with an introduction on the theory and practice of seismic reflection prospecting and the general Palaeozoic geology of the study area. It then describes the equipment used, preliminary investigations (alignment of instruments, velocity determinations), and field tests conducted over various hydrocarbon prospects. Finally, the feasibility of using seismic methods in the area is discussed along with reasons for difficulties experienced in the investigation.

  18. Understanding Ebola Virus Transmission

    Directory of Open Access Journals (Sweden)

    Seth Judson

    2015-02-01

    Full Text Available An unprecedented number of Ebola virus infections among healthcare workers and patients have raised questions about our understanding of Ebola virus transmission. Here, we explore different routes of Ebola virus transmission between people, summarizing the known epidemiological and experimental data. From this data, we expose important gaps in Ebola virus research pertinent to outbreak situations. We further propose experiments and methods of data collection that will enable scientists to fill these voids in our knowledge about the transmission of Ebola virus.

  19. Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep

    OpenAIRE

    bin Tarif, Abid; Lasecka, Lidia; Holzer, Barbara; Baron, Michael D

    2012-01-01

    Abstract Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV) and Ganjam virus (GV) are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated ...

  20. Evaluation of immune response and protective effect of four vaccines against the tick-borne encephalitis virus.

    Science.gov (United States)

    Morozova, O V; Bakhvalova, V N; Potapova, O F; Grishechkin, A E; Isaeva, E I; Aldarov, K V; Klinov, D V; Vorovich, M F

    2014-05-23

    Among three main subtypes of the tick-borne encephalitis virus (TBEV), the Siberian subtype is currently dominant in a majority of the endemic regions of Russia. However, inactivated vaccines are based on TBEV strains of the heterologous Far Eastern or the European subtypes isolated 40-77 years ago. To analyze the efficacy of the available vaccines against currently prevailing TBEV isolates of the Siberian subtype, mice were immunized subcutaneously three times (one group per each vaccine). The expression of seven cytokine genes was determined using RT-PCR. Sera were studied using homologous and heterologous ELISA, hemagglutination inhibition (HI) and neutralization tests with TBEV strains of the Far Eastern, Siberian and European subtypes. Cross-protective efficacy of the vaccines was evaluated with the TBEV strain 2689 of Siberian subtype isolated from an ixodid tick from the Novosibirsk, South-Western Siberia, Russia in 2010. The cytokine gene expression profile indicates a predominantly Th2 response due to exogenous antigen presentation. Titers for homologous combinations of vaccine strain and strain in ELISA, HI and neutralization tests exceeded those for heterologous antigen-antibody pairs. Despite antibody detection by means of ELISA, HI and neutralization tests, the mouse protection afforded by the vaccines differed significantly. Complete protection of mice challenged with 100 LD50 virus of the Siberian subtype was induced by the vaccine "Encevir" ("Microgen", Tomsk, Russia). The minimal immunization doze (MID50) of "Encevir" protecting 50% of the mice was less than 0.0016 ml. Partial protective effect of vaccines produced in Moscow, Russia and Austria revealed MID50 within recommended intervals (0.001-0.017 ml). However, the MID50 for the vaccine "Encepur" (Novartis, Germany) 0.04 ml exceeded acceptable limits with total loss of mice immunized with vaccine diluted 32, 100 and 320 fold. These results suggest regular evaluation of TBEV vaccines in regions

  1. Zika Virus

    Science.gov (United States)

    ... through blood transfusions. There have been outbreaks of Zika virus in the United States, Africa, Southeast Asia, the ... not travel to areas where there is a Zika virus outbreak. If you do decide to travel, first ...

  2. Persistent shift of Calanus spp. in the south-western Norwegian Sea since 2003, linked to ocean climate

    DEFF Research Database (Denmark)

    Kristiansen, Inga; Gaard, Eilif; Hátún, Hjalmar

    2016-01-01

    The southwestern Norwegian Sea is characterized by an inflow of warm and saline Atlantic water from the southwest and cold and less saline East IcelandicWater (EIW), of Arctic origin, from the northwest. These two water masses meet and form the Iceland-Faroe Front (IFF). In this region, the copep...... on the ecosystem and pelagic fish in this subpolar Atlantic region under expected climate change...

  3. Stratigraphy and structural setting of Upper Cretaceous Frontier Formation, western Centennial Mountains, southwestern Montana and southeastern Idaho

    Science.gov (United States)

    Dyman, T.S.; Tysdal, R.G.; Perry, W.J.; Nichols, D.J.; Obradovich, J.D.

    2008-01-01

    Stratigraphic, sedimentologic, and palynologic data were used to correlate the Frontier Formation of the western Centennial Mountains with time-equivalent rocks in the Lima Peaks area and other nearby areas in southwestern Montana. The stratigraphic interval studied is in the middle and upper parts (but not uppermost) of the formation based on a comparison of sandstone petrography, palynologic age data, and our interpretation of the structure using a seismic line along the frontal zone of the Centennial Mountains and the adjacent Centennial Valley. The Frontier Formation is comprised of sandstone, siltstone, mudstone, limestone, and silty shale in fluvial and coastal depositional settings. A distinctive characteristic of these strata in the western Centennial Mountains is the absence of conglomerate and conglomeratic sandstone beds. Absence of conglomerate beds may be due to lateral facies changes associated with fluvial systems, a distal fining of grain size, and the absence of both uppermost and lower Frontier rocks in the study area. Palynostratigraphic data indicate a Coniacian age for the Frontier Formation in the western Centennial Mountains. These data are supported by a geochronologic age from the middle part of the Frontier at Lima Peaks indicating a possible late Coniacian-early Santonian age (86.25 ?? 0.38 Ma) for the middle Frontier there. The Frontier Formation in the western Centennial Mountains is comparable in age and thickness to part of the Frontier at Lima Peaks. These rocks represent one of the thickest known sequences of Frontier strata in the Rocky Mountain region. Deposition was from about 95 to 86 Ma (middle Cenomanian to at least early Santonian), during which time, shoreface sandstone of the Telegraph Creek Formation and marine shale of the Cody Shale were deposited to the east in the area now occupied by the Madison Range in southwestern Montana. Frontier strata in the western Centennial Mountains are structurally isolated from other

  4. Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep

    Directory of Open Access Journals (Sweden)

    bin Tarif Abid

    2012-10-01

    Full Text Available Abstract Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV and Ganjam virus (GV are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated it in a pilot study of the pathogenicity induced by two different isolates of NSDV/GV. One isolate was highly adapted to tissue culture, grew in most cell lines tested, and was essentially apathogenic in sheep. The second isolate appeared to be poorly adapted to cell culture and retained pathogenicity in sheep. The real-time PCR assay for virus easily detected 4 copies or less of the viral genome, and allowed a quantitative measure of the virus in whole blood. Measurement of the changes in cytokine mRNAs showed similar changes to those observed in humans infected by the closely related virus Crimean Congo hemorrhagic fever virus.

  5. Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep.

    Science.gov (United States)

    Bin Tarif, Abid; Lasecka, Lidia; Holzer, Barbara; Baron, Michael D

    2012-10-19

    Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV) and Ganjam virus (GV) are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated it in a pilot study of the pathogenicity induced by two different isolates of NSDV/GV. One isolate was highly adapted to tissue culture, grew in most cell lines tested, and was essentially apathogenic in sheep. The second isolate appeared to be poorly adapted to cell culture and retained pathogenicity in sheep. The real-time PCR assay for virus easily detected 4 copies or less of the viral genome, and allowed a quantitative measure of the virus in whole blood. Measurement of the changes in cytokine mRNAs showed similar changes to those observed in humans infected by the closely related virus Crimean Congo hemorrhagic fever virus.

  6. Transmission of Influenza A Viruses

    Science.gov (United States)

    Neumann, Gabriele; Kawaoka, Yoshihiro

    2015-01-01

    Influenza A viruses cause respiratory infections that range from asymptomatic to deadly in humans. Widespread outbreaks (pandemics) are attributable to ‘novel’ viruses that possess a viral hemagglutinin (HA) gene to which humans lack immunity. After a pandemic, these novel viruses form stable virus lineages in humans and circulate until they are replaced by other novel viruses. The factors and mechanisms that facilitate virus transmission among hosts and the establishment of novel lineages are not completely understood, but the HA and basic polymerase 2 (PB2) proteins are thought to play essential roles in these processes by enabling avian influenza viruses to infect mammals and replicate efficiently in their new host. Here, we summarize our current knowledge of the contributions of HA, PB2, and other viral components to virus transmission and the formation of new virus lineages. PMID:25812763

  7. Description of two new Capnia species (Plecoptera: Capniidae) from the Hengduan Mountains of southwestern China.

    Science.gov (United States)

    Chen, Zhi-Teng; DU, Yu-Zhou

    2017-06-07

    Two new species of the genus Capnia from the Hengduan Mountains of southwestern China, C. oblata sp. nov. and C. xiei sp. nov. are described and illustrated as new members of the C. cordata Kimmins species group. Capnia oblata sp. nov. is characterized by posteromedial process of tergum 9 connecting antecosta with the medial sclerite bar. Capnia xiei sp. nov. is characterized by main epiproct sclerite bifurcate apically and basally with a bilamellar structure. The new species are compared with similar taxa.

  8. New frontiers in oncolytic viruses: optimizing and selecting for virus strains with improved efficacy

    Directory of Open Access Journals (Sweden)

    Lundstrom K

    2018-02-01

    Full Text Available Kenneth Lundstrom PanTherapeutics, Lutry, Switzerland Abstract: Oncolytic viruses have demonstrated selective replication and killing of tumor cells. Different types of oncolytic viruses – adenoviruses, alphaviruses, herpes simplex viruses, Newcastle disease viruses, rhabdoviruses, Coxsackie viruses, and vaccinia viruses – have been applied as either naturally occurring or engineered vectors. Numerous studies in animal-tumor models have demonstrated substantial tumor regression and prolonged survival rates. Moreover, clinical trials have confirmed good safety profiles and therapeutic efficacy for oncolytic viruses. Most encouragingly, the first cancer gene-therapy drug – Gendicine, based on oncolytic adenovirus type 5 – was approved in China. Likewise, a second-generation oncolytic herpes simplex virus-based drug for the treatment of melanoma has been registered in the US and Europe as talimogene laherparepvec. Keywords: immunotherapy, viral vectors, clinical trials, drug approval

  9. Postmortem stability of Ebola virus.

    Science.gov (United States)

    Prescott, Joseph; Bushmaker, Trenton; Fischer, Robert; Miazgowicz, Kerri; Judson, Seth; Munster, Vincent J

    2015-05-01

    The ongoing Ebola virus outbreak in West Africa has highlighted questions regarding stability of the virus and detection of RNA from corpses. We used Ebola virus-infected macaques to model humans who died of Ebola virus disease. Viable virus was isolated <7 days posteuthanasia; viral RNA was detectable for 10 weeks.

  10. A Foxtail mosaic virus Vector for Virus-Induced Gene Silencing in Maize.

    Science.gov (United States)

    Mei, Yu; Zhang, Chunquan; Kernodle, Bliss M; Hill, John H; Whitham, Steven A

    2016-06-01

    Plant viruses have been widely used as vectors for foreign gene expression and virus-induced gene silencing (VIGS). A limited number of viruses have been developed into viral vectors for the purposes of gene expression or VIGS in monocotyledonous plants, and among these, the tripartite viruses Brome mosaic virus and Cucumber mosaic virus have been shown to induce VIGS in maize (Zea mays). We describe here a new DNA-based VIGS system derived from Foxtail mosaic virus (FoMV), a monopartite virus that is able to establish systemic infection and silencing of endogenous maize genes homologous to gene fragments inserted into the FoMV genome. To demonstrate VIGS applications of this FoMV vector system, four genes, phytoene desaturase (functions in carotenoid biosynthesis), lesion mimic22 (encodes a key enzyme of the porphyrin pathway), iojap (functions in plastid development), and brown midrib3 (caffeic acid O-methyltransferase), were silenced and characterized in the sweet corn line Golden × Bantam. Furthermore, we demonstrate that the FoMV infectious clone establishes systemic infection in maize inbred lines, sorghum (Sorghum bicolor), and green foxtail (Setaria viridis), indicating the potential wide applications of this viral vector system for functional genomics studies in maize and other monocots. © 2016 American Society of Plant Biologists. All Rights Reserved.

  11. Cambrian trilobites with Siberian affinities, southwestern Alaska

    Energy Technology Data Exchange (ETDEWEB)

    Palmer, A.R.; Egbert, R.M.; Sullivan, R.; Knoth, J.S.

    1985-02-01

    Cambrian trilobites occur in two levels (about 7 m apart) in the core of a large, complex anticlinal structure in the area between the Taylor Mountains and the Hoholitna River in southwestern Alaska. The lower collection contains Erbia, Macannaia (a species close to Soviet forms described as Pagetia ferox Lermontova), two species of Kootenia (including one perhaps cospecific with forms from the central Brooks range), and several species of ptychoparioid trilobites. It is clear that biogeographic affinities are with the transitional facies of the eastern Siberian platform and the south Siberian foldbelt. In Soviet terms, the age of the collection falls in a disputed interval called latest Early Cambrian (Tojonian) by some authors, and earliest Middle Cambrian (Amgan) by others. In North American terms, Macannaia is known only from early Middle Cambrian beds. The younger collection contains abundant agnostids, a variety of conocoryphids, Paradoxides, and several species of ptychoparioid trilobites. This is an assemblage of undoubted late Middle Cambrian age, comparable to faunas described from the Maya State of the Siberian platform and the Paradoxides paradoxissimus Stage of the Baltic region. Both faunas are from ocean-facing or outer shelf environments. None of the key non-agnostid or non-pagetiid elements have been seen previously in deposits of Cambrian North America.

  12. Efficient production of infectious viruses requires enzymatic activity of Epstein-Barr virus protein kinase.

    Science.gov (United States)

    Murata, Takayuki; Isomura, Hiroki; Yamashita, Yoriko; Toyama, Shigenori; Sato, Yoshitaka; Nakayama, Sanae; Kudoh, Ayumi; Iwahori, Satoko; Kanda, Teru; Tsurumi, Tatsuya

    2009-06-20

    The Epstein-Barr virus (EBV) BGLF4 gene product is the only protein kinase encoded by the virus genome. In order to elucidate its physiological roles in viral productive replication, we here established a BGLF4-knockout mutant and a revertant virus. While the levels of viral DNA replication of the deficient mutant were equivalent to those of the wild-type and the revertant, virus production was significantly impaired. Expression of the BGLF4 protein in trans fully complemented the low yield of the mutant virus, while expression of a kinase-dead (K102I) form of the protein failed to restore the virus titer. These results demonstrate that BGLF4 plays a significant role in production of infectious viruses and that the kinase activity is crucial.

  13. Propagation Effect of a Virus Outbreak on a Network with Limited Anti-Virus Ability.

    Directory of Open Access Journals (Sweden)

    Yonghong Xu

    Full Text Available This paper describes a new computer virus spreading model which takes into account the possibility of a virus outbreak on a network with limited anti-virus ability. Then, the model is investigated for the existence of equilibria and their stabilities are proved and illustrated. Moreover, it is found that these two factors are not only relative to the threshold value determining whether the virus becomes extinct or not, but that they are also relative to the virus epidemic levels. Theoretical and experimental results indicate that, in some ways, it would be practically possible to eradicate the virus or suppress its prevalence below a suitable level. Consequently, some suggestions are proposed that may help eradicate or suppress virus propagation over a real computer network.

  14. An introduction to computer viruses

    Energy Technology Data Exchange (ETDEWEB)

    Brown, D.R.

    1992-03-01

    This report on computer viruses is based upon a thesis written for the Master of Science degree in Computer Science from the University of Tennessee in December 1989 by David R. Brown. This thesis is entitled An Analysis of Computer Virus Construction, Proliferation, and Control and is available through the University of Tennessee Library. This paper contains an overview of the computer virus arena that can help the reader to evaluate the threat that computer viruses pose. The extent of this threat can only be determined by evaluating many different factors. These factors include the relative ease with which a computer virus can be written, the motivation involved in writing a computer virus, the damage and overhead incurred by infected systems, and the legal implications of computer viruses, among others. Based upon the research, the development of a computer virus seems to require more persistence than technical expertise. This is a frightening proclamation to the computing community. The education of computer professionals to the dangers that viruses pose to the welfare of the computing industry as a whole is stressed as a means of inhibiting the current proliferation of computer virus programs. Recommendations are made to assist computer users in preventing infection by computer viruses. These recommendations support solid general computer security practices as a means of combating computer viruses.

  15. Viruses infecting marine molluscs.

    Science.gov (United States)

    Arzul, Isabelle; Corbeil, Serge; Morga, Benjamin; Renault, Tristan

    2017-07-01

    Although a wide range of viruses have been reported in marine molluscs, most of these reports rely on ultrastructural examination and few of these viruses have been fully characterized. The lack of marine mollusc cell lines restricts virus isolation capacities and subsequent characterization works. Our current knowledge is mostly restricted to viruses affecting farmed species such as oysters Crassostrea gigas, abalone Haliotis diversicolor supertexta or the scallop Chlamys farreri. Molecular approaches which are needed to identify virus affiliation have been carried out for a small number of viruses, most of them belonging to the Herpesviridae and birnaviridae families. These last years, the use of New Generation Sequencing approach has allowed increasing the number of sequenced viral genomes and has improved our capacity to investigate the diversity of viruses infecting marine molluscs. This new information has in turn allowed designing more efficient diagnostic tools. Moreover, the development of experimental infection protocols has answered some questions regarding the pathogenesis of these viruses and their interactions with their hosts. Control and management of viral diseases in molluscs mostly involve active surveillance, implementation of effective bio security measures and development of breeding programs. However factors triggering pathogen development and the life cycle and status of the viruses outside their mollusc hosts still need further investigations. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. Bird species and numbers of birds in oak savannas of the Southwestern Borderlands region including effects of burning

    Science.gov (United States)

    Peter F. Ffolliott; Hui Chen; Gerald J. Gottfried

    2011-01-01

    Oak savannas of the Southwestern Borderlands region provide food, cover, and sites for nesting, roosting, and perching for a diversity of bird species. The results of a five-year (2003-2007) study of bird species, numbers of birds, and their diversities in the naturally occurring (unburned) oak savannas of the region are reported in this paper. Effects of cool-season...

  17. Statistical Analysis of Terrestrial Water Storage Change Over Southwestern United States

    Science.gov (United States)

    Eibedingil, I. G.; Mubako, S. T.; Hargrove, W. L.; Espino, A. C.

    2017-12-01

    A warming trend over recent decades has aggravated water resource challenges in the arid southwestern region of the United States (U.S.). An increase in temperature, coupled with decreasing snowpack and rainfall have impacted the region's cities, ecosystems, and agriculture. The region is the largest contributor of agricultural products to the U.S. market resulting from irrigation. Water use through irrigation is stressing already limited terrestrial water resources. Population growth in recent decades has also led to increased water demand. This study utilizes products of the Gravity Recovery and Climate Experiment (GRACE) twin satellites experiment in MATLAB and ArcGIS to examine terrestrial water storage changes in the southwestern region of the U.S., comprised of the eight states of Texas, California, Nevada, Utah, Arizona, Colorado, New Mexico, and Oklahoma. Linear trend analysis was applied to the equivalent water-height data of terrestrial water storage changes (TWSC), precipitation, and air temperature. Correlation analysis was performed on couplings of TWSC - precipitation and TWSC - air temperature to examine the impact of temperature and precipitation on the region's water resources. Our preliminary results show a decreasing trend of TWSC from April 2002 to July 2016 in almost all parts of the region. Precipitation shows a decreasing trend from March 2000 to March 2017 for most of the region, except for sparse areas of increased precipitation near the northwestern coast of California, and a belt running from Oklahoma through the middle of Texas to the El Paso/New Mexico border. From April 2002 to December 2014, air temperature exhibited a negative trend for most of the region, except a larger part of California and a small location in central Texas. Correlation between TWSC and precipitation was mostly positive, but a negative trend was observed when TWSC and air temperature were correlated. The study contributes to the understanding of terrestrial water

  18. Coinfection with Epstein–Barr Virus (EBV), Human Papilloma Virus (HPV) and Polyoma BK Virus (BKPyV) in Laryngeal, Oropharyngeal and Oral Cavity Cancer

    OpenAIRE

    Drop, Bartłomiej; Strycharz-Dudziak, Małgorzata; Kliszczewska, Ewa; Polz-Dacewicz, Małgorzata

    2017-01-01

    Most research providing evidence for the role of oncogenic viruses in head and neck squamous cell carcinoma (SCC) development is focused on one type of virus without analyzing possible interactions between two or more types of viruses. The aim of this study was to analyse the prevalence of co-infection with human papillomavirus (HPV), Epstein–Barr virus (EBV) and polyoma BK virus (BKPyV) in oral, oropharyngeal and laryngeal squamous cell carcinomas in Polish patients. The correlations between...

  19. Determination of Sorption Coefficient of Phosphorus Applied for Sugarcane Production in Southwestern Florida.

    Science.gov (United States)

    Muwamba, A; Nkedi-Kizza, P; Morgan, K T

    2016-09-01

    Phosphorus is among the essential nutrients applied to sugarcane ( L.) fields in the form of a fertilizer mixture (N, P, and K) in southwestern Florida. Sorption coefficient is used for modeling P movement, and in this study, we hypothesized that the sorption coefficient determined using fertilizer mixture (N, P, and K) will be significantly different from values determined using KCl and CaCl, the electrolytes most commonly used for conducting sorption experiments. Supporting electrolytes, 0.01 mol L KCl, 0.005 mol L CaCl, deionized (DI) water, simulated Florida rain, and fertilizer mixture prepared in Florida rain were used to characterize P sorption. Immokalee (Sandy, siliceous, hyperthermic Arenic Alaquods) and Margate (Sandy, siliceous hyperthermic Mollic Psammaquents) are the dominant mineral soils used for sugarcane production in southwestern Florida; we used the A and B horizons of Margate soil and the A and B horizons of the Immokalee soil for sorption experiments in this study. Freundlich sorption isotherms described P sorption data. The Freundlich sorption isotherm coefficients followed the trend 0.005 mol L CaCl > 0.01 mol L KCl ≈ fertilizer mixture > simulated Florida rain ≈ DI water. Sorption coefficients were used for modeling P movement with HYDRUS 1D; similar P results were obtained with the 0.01 mol L KCl and fertilizer mixture electrolyte treatments. The sorption coefficient for DI water and simulated Florida rain overpredicted P movement. The P sorption data showed the importance of choosing the appropriate electrolyte for conducting experiments based on the composition of fertilizer. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  20. RNA viruses in the sea.

    Science.gov (United States)

    Lang, Andrew S; Rise, Matthew L; Culley, Alexander I; Steward, Grieg F

    2009-03-01

    Viruses are ubiquitous in the sea and appear to outnumber all other forms of marine life by at least an order of magnitude. Through selective infection, viruses influence nutrient cycling, community structure, and evolution in the ocean. Over the past 20 years we have learned a great deal about the diversity and ecology of the viruses that constitute the marine virioplankton, but until recently the emphasis has been on DNA viruses. Along with expanding knowledge about RNA viruses that infect important marine animals, recent isolations of RNA viruses that infect single-celled eukaryotes and molecular analyses of the RNA virioplankton have revealed that marine RNA viruses are novel, widespread, and genetically diverse. Discoveries in marine RNA virology are broadening our understanding of the biology, ecology, and evolution of viruses, and the epidemiology of viral diseases, but there is still much that we need to learn about the ecology and diversity of RNA viruses before we can fully appreciate their contributions to the dynamics of marine ecosystems. As a step toward making sense of how RNA viruses contribute to the extraordinary viral diversity in the sea, we summarize in this review what is currently known about RNA viruses that infect marine organisms.

  1. Reverse genetics of measles virus and resulting multivalent recombinant vaccines: applications of recombinant measles viruses.

    Science.gov (United States)

    Billeter, M A; Naim, H Y; Udem, S A

    2009-01-01

    An overview is given on the development of technologies to allow reverse genetics of RNA viruses, i.e., the rescue of viruses from cDNA, with emphasis on nonsegmented negative-strand RNA viruses (Mononegavirales), as exemplified for measles virus (MV). Primarily, these technologies allowed site-directed mutagenesis, enabling important insights into a variety of aspects of the biology of these viruses. Concomitantly, foreign coding sequences were inserted to (a) allow localization of virus replication in vivo through marker gene expression, (b) develop candidate multivalent vaccines against measles and other pathogens, and (c) create candidate oncolytic viruses. The vector use of these viruses was experimentally encouraged by the pronounced genetic stability of the recombinants unexpected for RNA viruses, and by the high load of insertable genetic material, in excess of 6 kb. The known assets, such as the small genome size of the vector in comparison to DNA viruses proposed as vectors, the extensive clinical experience of attenuated MV as vaccine with a proven record of high safety and efficacy, and the low production cost per vaccination dose are thus favorably complemented.

  2. Schmallenberg Virus

    Indian Academy of Sciences (India)

    IAS Admin

    explore the potential of this infection crossing the species barrier and thereby .... The virus targets mainly the brain of the unborn animal resulting in neurological ... The virus is located in the blood of the adult infected animal or in the central ...

  3. A combination in-ovo vaccine for avian influenza virus and Newcastle disease virus.

    Science.gov (United States)

    Steel, John; Burmakina, Svetlana V; Thomas, Colleen; Spackman, Erica; García-Sastre, Adolfo; Swayne, David E; Palese, Peter

    2008-01-24

    The protection of poultry from H5N1 highly pathogenic avian influenza A (HPAI) and Newcastle disease virus (NDV) can be achieved through vaccination, as part of a broader disease control strategy. We have previously generated a recombinant influenza virus expressing, (i) an H5 hemagglutinin protein, modified by the removal of the polybasic cleavage peptide and (ii) the ectodomain of the NDV hemagglutinin-neuraminidase (HN) protein in the place of the ectodomain of influenza neuraminidase (Park MS, et al. Proc Natl Acad Sci USA 2006;103(21):8203-8). Here we show this virus is attenuated in primary normal human bronchial epithelial (NHBE) cell culture, and demonstrate protection of C57BL/6 mice from lethal challenge with an H5 HA-containing influenza virus through immunisation with the recombinant virus. In addition, in-ovo vaccination of 18-day-old embryonated chicken eggs provided 90% and 80% protection against highly stringent lethal challenge by NDV and H5N1 virus, respectively. We propose that this virus has potential as a safe in-ovo live, attenuated, bivalent avian influenza and Newcastle disease virus vaccine.

  4. Evaluation of the suitability of a plant virus, pepper mild mottle virus, as a surrogate of human enteric viruses for assessment of the efficacy of coagulation-rapid sand filtration to remove those viruses.

    Science.gov (United States)

    Shirasaki, N; Matsushita, T; Matsui, Y; Yamashita, R

    2018-02-01

    Here, we evaluated the removal of three representative human enteric viruses - adenovirus (AdV) type 40, coxsackievirus (CV) B5, and hepatitis A virus (HAV) IB - and one surrogate of human caliciviruses - murine norovirus (MNV) type 1 - by coagulation-rapid sand filtration, using water samples from eight water sources for drinking water treatment plants in Japan. The removal ratios of a plant virus (pepper mild mottle virus; PMMoV) and two bacteriophages (MS2 and φX174) were compared with the removal ratios of human enteric viruses to assess the suitability of PMMoV, MS2, and φX174 as surrogates for human enteric viruses. The removal ratios of AdV, CV, HAV, and MNV, evaluated via the real-time polymerase chain reaction (PCR) method, were 0.8-2.5-log 10 when commercially available polyaluminum chloride (PACl, basicity 1.5) and virgin silica sand were used as the coagulant and filter medium, respectively. The type of coagulant affected the virus removal efficiency, but the age of silica sand used in the rapid sand filtration did not. Coagulation-rapid sand filtration with non-sulfated, high-basicity PACls (basicity 2.1 or 2.5) removed viruses more efficiently than the other aluminum-based coagulants. The removal ratios of MS2 were sometimes higher than those of the three human enteric viruses and MNV, whereas the removal ratios of φX174 tended to be smaller than those of the three human enteric viruses and MNV. In contrast, the removal ratios of PMMoV were similar to and strongly correlated with those of the three human enteric viruses and MNV. Thus, PMMoV appears to be a suitable surrogate for human enteric viruses for the assessment of the efficacy of coagulation-rapid sand filtration to remove viruses. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. An inactivated whole-virus porcine parvovirus vaccine protects pigs against disease but does not prevent virus shedding even after homologous virus challenge.

    Science.gov (United States)

    Foerster, Tessa; Streck, André Felipe; Speck, Stephanie; Selbitz, Hans-Joachim; Lindner, Thomas; Truyen, Uwe

    2016-06-01

    Inactivated whole-virus vaccines against porcine parvovirus (PPV) can prevent disease but not infection and virus shedding after heterologous virus challenge. Here, we showed that the same is true for a homologous challenge. Pregnant sows were vaccinated with an experimental inactivated vaccine based on PPV strain 27a. They were challenged on day 40 of gestation with the virulent porcine parvovirus PPV-27a from which the vaccine was prepared (homologous challenge). On day 90 of gestation, the fetuses from vaccinated sows were protected against disease, while the fetuses of the non-vaccinated sows (control group) exhibited signs of parvovirus disease. All gilts, whether vaccinated or not vaccinated, showed a boost of PPV-specific antibodies indicative of virus infection and replication. Low DNA copy numbers, but not infectious virus, could be demonstrated in nasal or rectal swabs of immunized sows, but high copy numbers of challenge virus DNA as well as infectious virus could both be demonstrated in non-vaccinated sows.

  6. Uranium in the Wyoming Landscape Conservation Initiative study area, southwestern Wyoming

    Science.gov (United States)

    Wilson, Anna B.

    2015-10-20

    Wyoming has led the nation as the producer of uranium ore since 1995 and contains the largest reserves of any state. Approximately one third of Wyoming’s total production came from deposits in, or immediately adjacent to, the Wyoming Landscape Conservation Initiative (WLCI) study area in the southwestern corner of the state including all of Carbon, Lincoln, Sublette, Sweetwater, Uinta, and parts of southern Fremont Counties. Conventional open-pit and underground mining methods were employed in the study area until the early 1990s. Since the early 1990s, all uranium mining has been by in-situ recovery (also called in-situ leach). It is estimated that statewide remaining resources of 141,000 tonnes of uranium are about twice the 84,000 tonnes of uranium that the state has already produced.

  7. Can one invasion lead to another? Niche space and the future of Southwestern U.S. riparian zones

    OpenAIRE

    Lindsay Reynolds; David Cooper

    2009-01-01

    Background/Question/Methods: Invasive species are increasingly problematic world-wide. Scientists working to understand why invasive species are successful must first understand the processes of invasion. Invasion facilitation and empty niche exploitation are key processes that have not been well-studied in species rich ecosystems such as riparian areas. In the southwestern United States (U.S.) two prominent invaders of riparian habitats are the exotic woody plant species tamarisk (Tamarix ra...

  8. Larval fish composition and spatio-temporal variation in the estuary of Pendas River, southwestern Johor, Peninsular Malaysia

    OpenAIRE

    Arshad, Aziz Bin; Ara, Roushon; Amin, S. M. Nurul; Daud, Siti Khalijah; Ghaffar, Mazlan Abdul

    2012-01-01

    The temporal and spatial patterns of family composition and abundance of fish larvae in the Pendas River mangrove estuary (Southwestern Johor) of Peninsular Malaysia was studied monthly using bongo net in daylight sampling. Environmental factors viz., water temperature, salinity, dissolved oxygen, pH and conductivity were also monitored during sampling. In total 2687 individuals representing 19 families were collected during 12 months study period (October 2007 to September 2008). The larval ...

  9. Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species.

    Science.gov (United States)

    Di Giallonardo, Francesca; Schlub, Timothy E; Shi, Mang; Holmes, Edward C

    2017-04-15

    Viruses use the cellular machinery of their hosts for replication. It has therefore been proposed that the nucleotide and dinucleotide compositions of viruses should match those of their host species. If this is upheld, it may then be possible to use dinucleotide composition to predict the true host species of viruses sampled in metagenomic surveys. However, it is also clear that different taxonomic groups of viruses tend to have distinctive patterns of dinucleotide composition that may be independent of host species. To determine the relative strength of the effect of host versus virus family in shaping dinucleotide composition, we performed a comparative analysis of 20 RNA virus families from 15 host groupings, spanning two animal phyla and more than 900 virus species. In particular, we determined the odds ratios for the 16 possible dinucleotides and performed a discriminant analysis to evaluate the capability of virus dinucleotide composition to predict the correct virus family or host taxon from which it was isolated. Notably, while 81% of the data analyzed here were predicted to the correct virus family, only 62% of these data were predicted to their correct subphylum/class host and a mere 32% to their correct mammalian order. Similarly, dinucleotide composition has a weak predictive power for different hosts within individual virus families. We therefore conclude that dinucleotide composition is generally uniform within a virus family but less well reflects that of its host species. This has obvious implications for attempts to accurately predict host species from virus genome sequences alone. IMPORTANCE Determining the processes that shape virus genomes is central to understanding virus evolution and emergence. One question of particular importance is why nucleotide and dinucleotide frequencies differ so markedly between viruses. In particular, it is currently unclear whether host species or virus family has the biggest impact on dinucleotide frequencies and

  10. Correlations between silicic volcanic rocks of the St Mary's Islands (southwestern India) and eastern Madagascar

    DEFF Research Database (Denmark)

    Melluso, Leone; Sheth, Hetu C.; Mahoney, John J.

    2009-01-01

    The St Mary's, Islands (southwestern India) expose silicic volcanic and sub-volcanic rocks (rhyolites and granophyric dacites) emplaced contemporaneously with the Cretaceous igneous province of Madagascar, roughly 88-90 Ma ago. I he St Mary's Islands rocks have phenocrysts of plagioclase...... and isotopic Compositions very close to those of rhyolites exposed between Vatomandry Ilaka and Mananjary in eastern Madagascar, and are distinctly different from rhyolites front other sectors of the Madagascan province. We therefore postulate that the St Mary's and the Vatomandry-Ilaka Mananjary silicic rock...

  11. Monoclonal antibodies against plant viruses

    International Nuclear Information System (INIS)

    Sandler, E.; Dietzgen, R.G.

    1984-01-01

    Ever since antigenic properties of plant viruses were discovered antisera have been raised and used for plant virus diagnosis and for the analysis of virus structure as well. From the early qualitative diagnosis method of precipitating the virus in clarified sap of an infected plant and the first quantitative application of the precipitin test vast progress has been made with regard to the development of highly sensitive and highly quantitative methods for virus detection. Of equal importance was the improvement of methods for separating virus from host cell components since the specificity of antisera raised against a virus could be increased by using an antigen for immunization highly concentrated and largely freed from contaminating host substances. The introduction of the enzyme-linked immunosorbent assay (ELISA) into plant virology allows detection of virus in nanogram quantities. Still, the conventionally raised antisera, no matter how pure an antigen was used for immunization, are polyclonal. They contain products of thousands of different antibody-secreting plasma cell clones which can be directed against all antigenic determinants (epitopes) of the virus, but also against antigens of the host plant that may not have been entirely separated from the immunizing virus during the purification procedure. Even after cross adsorption of polyclonal antisera some residual heterogeneity can be expected to remain. Within these boundaries the information gained with polyclonal antisera on virus structure and on virus diagnosis has to be interpreted

  12. Perceptions of Nigerian Women about Human Papilloma Virus, Cervical Cancer, and HPV Vaccine

    Directory of Open Access Journals (Sweden)

    Olusola Anuoluwapo Akanbi

    2015-01-01

    Full Text Available Background. Cervical cancer caused by human papilloma virus (HPV though preventable has claimed the lives of many women worldwide. This study was embarked upon to evaluate the general knowledge and perceptions of Nigerian women on HPV, cervical cancer, and HPV vaccine. Methods. Structured questionnaires were administered to a cross section of 737 women randomly selected from the general population in two southwestern States of Nigeria. Statistical analysis was done using SPSS computer software version 16. A P value >0.05 was considered statistically significant. Results. One hundred and seventy-six (23.9% of the respondents had knowledge of HPV; 474 (64.3% are aware of cervical cancer but only 136 (18.5% know that HPV causes cervical cancer. 200 (27.1% are aware that there is an HPV vaccine while 300 (40.7% had knowledge of Pap smear test. Two hundred and sixty (35.3% of the respondents know that early detection of HPV can prevent cervical cancer and in spite of this, only 110 (14.9% have taken the Pap smear test before while 151 (20.5% are not willing to go for the test at all. Conclusions. There is therefore the need to create proper awareness on the HPV and its possible consequence of cervical carcinoma.

  13. Zika Virus and Pregnancy

    Science.gov (United States)

    ... Management Education & Events Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus and ... Patient Education Pamphlets - Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your fetus ...

  14. A basal dinosaur from the dawn of the dinosaur era in southwestern Pangaea.

    Science.gov (United States)

    Martinez, Ricardo N; Sereno, Paul C; Alcober, Oscar A; Colombi, Carina E; Renne, Paul R; Montañez, Isabel P; Currie, Brian S

    2011-01-14

    Upper Triassic rocks in northwestern Argentina preserve the most complete record of dinosaurs before their rise to dominance in the Early Jurassic. Here, we describe a previously unidentified basal theropod, reassess its contemporary Eoraptor as a basal sauropodomorph, divide the faunal record of the Ischigualasto Formation with biozones, and bracket the formation with (40)Ar/(39)Ar ages. Some 230 million years ago in the Late Triassic (mid Carnian), the earliest dinosaurs were the dominant terrestrial carnivores and small herbivores in southwestern Pangaea. The extinction of nondinosaurian herbivores is sequential and is not linked to an increase in dinosaurian diversity, which weakens the predominant scenario for dinosaurian ascendancy as opportunistic replacement.

  15. Zika Virus

    Science.gov (United States)

    ... with facebook share with twitter share with linkedin Zika Virus Credit: NIAID A female Aedes mosquito. This type of mosquito can transmit Zika, ... transmitted to humans through the bite of infected Aedes aegypti mosquitoes. Zika virus can be transmitted from an infected pregnant woman ...

  16. CHANDIPURA VIRUS

    Indian Academy of Sciences (India)

    First page Back Continue Last page Overview Graphics. CHANDIPURA VIRUS. First isolated from a village called Chandipura near Nagpur in 1965 in India. Belongs to rhabdoviridae family. Used as a Model System to study RNA virus multiplication in the infected cell at molecular level. Notes:

  17. Clinical and biological differences between recurrent herpes simplex virus and varicella-zoster virus infections

    International Nuclear Information System (INIS)

    Straus, S.E.

    1989-01-01

    The major features that distinguish recurrent herpes simplex virus infections from zoster are illustrated in this article by two case histories. The clinical and epidemiologic features that characterize recurrent herpes simplex virus and varicella-zoster virus infections are reviewed. It is noted that herpesvirus infections are more common and severe in patients with cellular immune deficiency. Each virus evokes both humoral and cellular immune response in the course of primary infection. DNA hybridization studies with RNA probes labelled with sulfur-35 indicate that herpes simplex viruses persist within neurons, and that varicella-zoster virus is found in the satellite cells that encircle the neurons

  18. Zika Virus and Pregnancy

    Medline Plus

    Full Text Available ... Management Education & Events Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus ... Patient Education Pamphlets - Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your ...

  19. Zika Virus and Pregnancy

    Medline Plus

    Full Text Available ... Education & Events Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus and ... Education Pamphlets - Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your fetus ...

  20. What's West Nile Virus?

    Science.gov (United States)

    ... for Educators Search English Español What's West Nile Virus? KidsHealth / For Kids / What's West Nile Virus? Print en español ¿Qué es el Virus del Nilo Occidental? What exactly is the West ...

  1. Zika Virus and Pregnancy

    Medline Plus

    Full Text Available ... Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus and Pregnancy Page ... Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your fetus if you ...

  2. Tree communities of lowland warm-temperate old-growth and neighboring shelterbelt forests in the Shikoku region of southwestern Japan

    Science.gov (United States)

    Shigeo Kuramoto; Shigenori Oshioka; Takahisa Hirayama; Kaori Sato; Yasumasa Hirata

    2007-01-01

    We characterized the tree species composition of a 30 ha old-growth and neighboring shelterbelt (reserved buffer strips among conifer plantations) in warm-temperate forests in the Shikoku region of southwestern Japan. Using a two-way indicator species analysis of data from 28 plots, we identified four structural groups in terms of relative basal area. These structural...

  3. Human Immunodeficiency Virus and Hepatitis C Virus Co-infection ...

    African Journals Online (AJOL)

    Human Immunodeficiency Virus and Hepatitis C Virus Co-infection in Cameroon: Investigation of the Genetic Diversity and Virulent ... AFRICAN JOURNALS ONLINE (AJOL) · Journals · Advanced Search · USING AJOL · RESOURCES ... DNA sequencing, and bioinformatics tools for sequence management and analysis.

  4. Tamarix as habitat for birds: Implications for riparian restoration in the Southwestern United States

    Science.gov (United States)

    Sogge, M.K.; Sferra, S.J.; Paxton, E.H.

    2008-01-01

    Exotic vegetation has become a major habitat component in many ecosystems around the world, sometimes dramatically changing the vegetation community structure and composition. In the southwestern United States, riparian ecosystems are undergoing major changes in part due to the establishment and spread of the exotic Tamarix (saltcedar, tamarisk). There are concerns about the suitability of Tamarix as habitat for birds. Although Tamarix habitats tend to support fewer species and individuals than native habitats, Arizona Breeding Bird Atlas data and Birds of North America accounts show that 49 species use Tamarix as breeding habitat. Importantly, the relative use of Tamarix and its quality as habitat vary substantially by geographic location and bird species. Few studies have examined how breeding in Tamarix actually affects bird survivorship and productivity; recent research on Southwestern Willow Flycatchers has found no negative effects from breeding in Tamarix habitats. Therefore, the ecological benefits and costs of Tamarix control are difficult to predict and are likely to be species specific and site specific. Given the likelihood that high-quality native riparian vegetation will not develop at all Tamarix control sites, restoration projects that remove Tamarix but do not assure replacement by high-quality native habitat have the potential to reduce the net riparian habitat value for some local or regional bird populations. Therefore, an assessment of potential negative impacts is important in deciding if exotic control should be conducted. In addition, measurable project objectives, appropriate control and restoration techniques, and robust monitoring are all critical to effective restoration planning and execution. ?? 2008 Society for Ecological Restoration International.

  5. Jemilohun et al., Afr. J. Infect. Dis. (2014)

    African Journals Online (AJOL)

    cadewumi

    Background: This study was conducted to determine the prevalence of hepatitis C virus antibody (anti-HCV), among a healthy university undergraduate population in south-western Nigeria. Materials and Methods: Relevant medical information of students who underwent the post-admission screening exercise for the year ...

  6. Virus world as an evolutionary network of viruses and capsidless selfish elements.

    Science.gov (United States)

    Koonin, Eugene V; Dolja, Valerian V

    2014-06-01

    Viruses were defined as one of the two principal types of organisms in the biosphere, namely, as capsid-encoding organisms in contrast to ribosome-encoding organisms, i.e., all cellular life forms. Structurally similar, apparently homologous capsids are present in a huge variety of icosahedral viruses that infect bacteria, archaea, and eukaryotes. These findings prompted the concept of the capsid as the virus "self" that defines the identity of deep, ancient viral lineages. However, several other widespread viral "hallmark genes" encode key components of the viral replication apparatus (such as polymerases and helicases) and combine with different capsid proteins, given the inherently modular character of viral evolution. Furthermore, diverse, widespread, capsidless selfish genetic elements, such as plasmids and various types of transposons, share hallmark genes with viruses. Viruses appear to have evolved from capsidless selfish elements, and vice versa, on multiple occasions during evolution. At the earliest, precellular stage of life's evolution, capsidless genetic parasites most likely emerged first and subsequently gave rise to different classes of viruses. In this review, we develop the concept of a greater virus world which forms an evolutionary network that is held together by shared conserved genes and includes both bona fide capsid-encoding viruses and different classes of capsidless replicons. Theoretical studies indicate that selfish replicons (genetic parasites) inevitably emerge in any sufficiently complex evolving ensemble of replicators. Therefore, the key signature of the greater virus world is not the presence of a capsid but rather genetic, informational parasitism itself, i.e., various degrees of reliance on the information processing systems of the host. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  7. Replacement of Murine Leukemia Virus Readthrough Mechanism by Human Immunodeficiency Virus Frameshift Allows Synthesis of Viral Proteins and Virus Replication

    Science.gov (United States)

    Brunelle, Marie-Noëlle; Brakier-Gingras, Léa; Lemay, Guy

    2003-01-01

    Retroviruses use unusual recoding strategies to synthesize the Gag-Pol polyprotein precursor of viral enzymes. In human immunodeficiency virus, ribosomes translating full-length viral RNA can shift back by 1 nucleotide at a specific site defined by the presence of both a slippery sequence and a downstream stimulatory element made of an extensive secondary structure. This so-called frameshift mechanism could become a target for the development of novel antiviral strategies. A different recoding strategy is used by other retroviruses, such as murine leukemia viruses, to synthesize the Gag-Pol precursor; in this case, a stop codon is suppressed in a readthrough process, again due to the presence of a specific structure adopted by the mRNA. Development of antiframeshift agents will greatly benefit from the availability of a simple animal and virus model. For this purpose, the murine leukemia virus readthrough region was rendered inactive by mutagenesis and the frameshift region of human immunodeficiency virus was inserted to generate a chimeric provirus. This substitution of readthrough by frameshift allows the synthesis of viral proteins, and the chimeric provirus sequence was found to generate infectious viruses. This system could be a most interesting alternative to study ribosomal frameshift in the context of a virus amenable to the use of a simple animal model. PMID:12584361

  8. [Mumps vaccine virus transmission].

    Science.gov (United States)

    Otrashevskaia, E V; Kulak, M V; Otrashevskaia, A V; Karpov, I A; Fisenko, E G; Ignat'ev, G M

    2013-01-01

    In this work we report the mumps vaccine virus shedding based on the laboratory confirmed cases of the mumps virus (MuV) infection. The likely epidemiological sources of the transmitted mumps virus were children who were recently vaccinated with the mumps vaccine containing Leningrad-Zagreb or Leningrad-3 MuV. The etiology of the described cases of the horizontal transmission of both mumps vaccine viruses was confirmed by PCR with the sequential restriction analysis.

  9. Zika Virus and Pregnancy

    Medline Plus

    Full Text Available ... Management Education & Events Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus and ... Patient Education Pamphlets - Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your fetus ...

  10. Zika Virus Fact Sheet

    Science.gov (United States)

    ... is caused by a virus transmitted primarily by Aedes mosquitoes. People with Zika virus disease can have symptoms including mild fever, skin ... framework. Q&A: Zika virus and complication ... mosquito from the Aedes genus, mainly Aedes aegypti in tropical regions. Aedes ...

  11. Computer Viruses: An Overview.

    Science.gov (United States)

    Marmion, Dan

    1990-01-01

    Discusses the early history and current proliferation of computer viruses that occur on Macintosh and DOS personal computers, mentions virus detection programs, and offers suggestions for how libraries can protect themselves and their users from damage by computer viruses. (LRW)

  12. An infectious bat-derived chimeric influenza virus harbouring the entry machinery of an influenza A virus.

    Science.gov (United States)

    Juozapaitis, Mindaugas; Aguiar Moreira, Étori; Mena, Ignacio; Giese, Sebastian; Riegger, David; Pohlmann, Anne; Höper, Dirk; Zimmer, Gert; Beer, Martin; García-Sastre, Adolfo; Schwemmle, Martin

    2014-07-23

    In 2012, the complete genomic sequence of a new and potentially harmful influenza A-like virus from bats (H17N10) was identified. However, infectious influenza virus was neither isolated from infected bats nor reconstituted, impeding further characterization of this virus. Here we show the generation of an infectious chimeric virus containing six out of the eight bat virus genes, with the remaining two genes encoding the haemagglutinin and neuraminidase proteins of a prototypic influenza A virus. This engineered virus replicates well in a broad range of mammalian cell cultures, human primary airway epithelial cells and mice, but poorly in avian cells and chicken embryos without further adaptation. Importantly, the bat chimeric virus is unable to reassort with other influenza A viruses. Although our data do not exclude the possibility of zoonotic transmission of bat influenza viruses into the human population, they indicate that multiple barriers exist that makes this an unlikely event.

  13. Roles of Personality, Vocational Interests, Academic Achievement and Socio-Cultural Factors in Educational Aspirations of Secondary School Adolescents in Southwestern Nigeria

    Science.gov (United States)

    Salami, Samuel O.

    2008-01-01

    Purpose: This paper seeks to examine the roles of personality, vocational interests, academic achievement and some socio-cultural factors in educational aspirations of secondary school adolescents in southwestern Nigeria. Design/methodology/approach: A survey research design was adopted. The sample comprised 430 (males = 220, females = 210)…

  14. Southwestern Federal Power System combined financial statements and supplemental schedules (with independent auditors` reports thereon) for the years ended September 30, 1996 and 1995

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-12-04

    This report presents the results of the independent certified public accountants` audit of the Southwestern Federal Power System`s (SWFPS) combined power system statement of assets, Federal investment and liabilities, and the related combined statements of revenues, expenses and accumulated net revenues, and cash flows. The 1996 financial statement audit was made under the provisions of the Inspector General Act (5 U.S.C. App.), as amended, the Government Management Reform Act (31 U.S.C. 3515), and Office of Management and Budget implementing guidance. The auditors` work was conducted in accordance with generally accepted government auditing standards. To fulfill audit responsibilities, the Office of Inspector General contracted with the independent public accounting firm of KPMG Peak Marwick LLP (KPMG) to conduct the audit for them, subject to their review. The auditors` report on SWFP`s internal control structure disclosed a reportable condition directed to the Southwestern Power Administration concerning a delay in properly classifying the value of plant assets. The report also included two reportable conditions directed to the Army Corps of Engineers regarding the inconsistent calculation of depreciation expense and the misallocation of multipurpose costs. None of these reportable conditions were considered to be material weaknesses. The auditors` report on SWFP`s compliance with laws and regulations disclosed no new instances of noncompliance by Southwestern.

  15. Zika virus infection.

    Science.gov (United States)

    Pougnet, Laurence; Thill, Chloé; Pougnet, Richard; Auvinet, Henri; Giacardi, Christophe; Drouillard, Isabelle

    2016-12-01

    A 21-year old woman from New-Caledonia had 40 ̊C fever with vomiting, arthralgia, myalgia, and measles-like rash. Etiological analyses showed primary infection with Zika virus. Because of severe clinical presentation, she was hospitalized in the intensive care unit of the Brest military Hospital. Zika virus is mainly transmitted by Aedes mosquitoes. If they settle in Metropolitan France, Zika virus might also spread there.

  16. Comparative analysis of rabbit hemorrhagic disease virus (RHDV) and new RHDV2 virus antigenicity, using specific virus-like particles.

    Science.gov (United States)

    Bárcena, Juan; Guerra, Beatriz; Angulo, Iván; González, Julia; Valcárcel, Félix; Mata, Carlos P; Castón, José R; Blanco, Esther; Alejo, Alí

    2015-09-24

    In 2010 a new Lagovirus related to rabbit haemorrhagic disease virus (RHDV) emerged in France and has since rapidly spread throughout domestic and wild rabbit populations of several European countries. The new virus, termed RHDV2, exhibits distinctive genetic, antigenic and pathogenic features. Notably, RHDV2 kills rabbits previously vaccinated with RHDV vaccines. Here we report for the first time the generation and characterization of RHDV2-specific virus-like particles (VLPs). Our results further confirmed the differential antigenic properties exhibited by RHDV and RHDV2, highlighting the need of using RHDV2-specific diagnostic assays to monitor the spread of this new virus.

  17. Structural and Functional Studies on the Fusion and Attachment Envelope Glycoproteins of Nipah Virus and Hendra Virus

    Science.gov (United States)

    2003-01-01

    including measles virus (MeV), mumps virus, Sendai virus (SeV), Newcastle disease virus (NDV), rinderpest virus, canine distemper virus (CDV), human...Institute of Health, Bethesda, MD. Hut 102, MT2, MT4, and CEM human T cell lines were provided by Chou-Zen Giam, USUHS, Bethesda, MD. The human osteosarcoma

  18. Unstable relationships between tree ring δ18O and climate variables over southwestern China: possible impacts from increasing central Pacific SSTs

    Science.gov (United States)

    An, Wenling; Liu, Xiaohong; Hou, Shugui; Zeng, Xiaomin; Sun, Weizhen; Wang, Wenzhi; Wang, Yu; Xu, Guobao; Ren, Jiawen

    2018-05-01

    In this study, we investigated the potential influence of central and eastern Pacific sea surface temperatures (SSTs) on the unstable relationship between earlywood δ18O and climatic factors in the southwestern China from 1902 to 2005. The results show that the strength of the climate signals recorded in the earlywood δ18O series has declined since the late 1970s. This reduction in signal strength may have been caused by the changes in the local hydroclimate, which is associated with the increasing SSTs in the central Pacific Ocean over recent decades. Alongside these increasing SSTs in the central Pacific, southwestern China has experienced more droughts, as well as more severe droughts through the late spring and early summer during the central Pacific (CP) El Niño years than during the eastern Pacific (EP) El Niño years in recent decades. This increased drought frequency may have weakened the response of earlywood δ18O to climate variables.

  19. Machinery penile injuries associated with traditional trousers of the Yoruba of South-western Nigeria: A consideration for proper work clothes

    Directory of Open Access Journals (Sweden)

    A.A. Popoola

    2012-03-01

    Full Text Available Appropriateness of garments for different vocations to avoid unintended injury to the worker has always been recognized. This report of two cases of machinery penile injuries in patients wearing the traditional trousers of the Yoruba tribe of south-western Nigeria emphasizes the need for wearing appropriate clothes when operating machines.

  20. Potential for saltwater intrusion into the lower Tamiami aquifer near Bonita Springs, southwestern Florida

    Science.gov (United States)

    Shoemaker, W. Barclay; Edwards, K. Michelle

    2003-01-01

    A study was conducted to examine the potential for saltwater intrusion into the lower Tamiami aquifer beneath Bonita Springs in southwestern Florida. Field data were collected, and constant- and variable-density ground-water flow simulations were performed that: (1) spatially quantified modern and seasonal stresses, (2) identified potential mechanisms of saltwater intrusion, and (3) estimated the potential extent of saltwater intrusion for the area of concern. MODFLOW and the inverse modeling routine UCODE were used to spatially quantify modern and seasonal stresses by calibrating a constant-density ground-water flow model to field data collected in 1996. The model was calibrated by assuming hydraulic conductivity parameters were accurate and by estimating unmonitored ground-water pumpage and potential evapotranspiration with UCODE. Uncertainty in these estimated parameters was quantified with 95-percent confidence intervals. These confidence intervals indicate more uncertainty (or less reliability) in the estimates of unmonitored ground-water pumpage than estimates of pan-evaporation multipliers, because of the nature and distribution of observations used during calibration. Comparison of simulated water levels, streamflows, and net recharge with field data suggests the model is a good representation of field conditions. Potential mechanisms of saltwater intrusion into the lower Tamiami aquifer include: (1) lateral inland movement of the freshwater-saltwater interface from the southwestern coast of Florida; (2) upward leakage from deeper saline water-bearing zones through natural upwelling and upconing, both of which could occur as diffuse upward flow through semiconfining layers, conduit flow through karst features, or pipe flow through leaky artesian wells; (3) downward leakage of saltwater from surface-water channels; and (4) movement of unflushed pockets of relict seawater. Of the many potential mechanisms of saltwater intrusion, field data and variable

  1. Single Assay Detection of Acute Bee Paralysis Virus, Kashmir Bee Virus and Israeli Acute Paralysis Virus

    DEFF Research Database (Denmark)

    Francis, Roy Mathew; Kryger, Per

    2012-01-01

    A new RT-PCR primer pair designed to identify Acute Bee Paralysis Virus (ABPV), Kashmir Bee Virus (KBV) or Israeli Acute Bee Paralysis Virus (IAPV) of honey bees (Apis mellifera L.) in a single assay is described. These primers are used to screen samples for ABPV, KBV, or IAPV in a single RT-PCR ......-PCR reaction saving time and money. The primers are located in the predicted overlapping gene (pog/ORFX) which is highly conserved across ABPV, KBV, IAPV and other dicistroviruses of social insects. This study has also identified the first case of IAPV in Denmark....

  2. Structure of viruses: a short history.

    Science.gov (United States)

    Rossmann, Michael G

    2013-05-01

    This review is a partially personal account of the discovery of virus structure and its implication for virus function. Although I have endeavored to cover all aspects of structural virology and to acknowledge relevant individuals, I know that I have favored taking examples from my own experience in telling this story. I am anxious to apologize to all those who I might have unintentionally offended by omitting their work. The first knowledge of virus structure was a result of Stanley's studies of tobacco mosaic virus (TMV) and the subsequent X-ray fiber diffraction analysis by Bernal and Fankuchen in the 1930s. At about the same time it became apparent that crystals of small RNA plant and animal viruses could diffract X-rays, demonstrating that viruses must have distinct and unique structures. More advances were made in the 1950s with the realization by Watson and Crick that viruses might have icosahedral symmetry. With the improvement of experimental and computational techniques in the 1970s, it became possible to determine the three-dimensional, near-atomic resolution structures of some small icosahedral plant and animal RNA viruses. It was a great surprise that the protecting capsids of the first virus structures to be determined had the same architecture. The capsid proteins of these viruses all had a 'jelly-roll' fold and, furthermore, the organization of the capsid protein in the virus were similar, suggesting a common ancestral virus from which many of today's viruses have evolved. By this time a more detailed structure of TMV had also been established, but both the architecture and capsid protein fold were quite different to that of the icosahedral viruses. The small icosahedral RNA virus structures were also informative of how and where cellular receptors, anti-viral compounds, and neutralizing antibodies bound to these viruses. However, larger lipid membrane enveloped viruses did not form sufficiently ordered crystals to obtain good X-ray diffraction

  3. Computer Viruses: Pathology and Detection.

    Science.gov (United States)

    Maxwell, John R.; Lamon, William E.

    1992-01-01

    Explains how computer viruses were originally created, how a computer can become infected by a virus, how viruses operate, symptoms that indicate a computer is infected, how to detect and remove viruses, and how to prevent a reinfection. A sidebar lists eight antivirus resources. (four references) (LRW)

  4. Yeast for virus research

    Science.gov (United States)

    Zhao, Richard Yuqi

    2017-01-01

    Budding yeast (Saccharomyces cerevisiae) and fission yeast (Schizosaccharomyces pombe) are two popular model organisms for virus research. They are natural hosts for viruses as they carry their own indigenous viruses. Both yeasts have been used for studies of plant, animal and human viruses. Many positive sense (+) RNA viruses and some DNA viruses replicate with various levels in yeasts, thus allowing study of those viral activities during viral life cycle. Yeasts are single cell eukaryotic organisms. Hence, many of the fundamental cellular functions such as cell cycle regulation or programed cell death are highly conserved from yeasts to higher eukaryotes. Therefore, they are particularly suited to study the impact of those viral activities on related cellular activities during virus-host interactions. Yeasts present many unique advantages in virus research over high eukaryotes. Yeast cells are easy to maintain in the laboratory with relative short doubling time. They are non-biohazardous, genetically amendable with small genomes that permit genome-wide analysis of virologic and cellular functions. In this review, similarities and differences of these two yeasts are described. Studies of virologic activities such as viral translation, viral replication and genome-wide study of virus-cell interactions in yeasts are highlighted. Impacts of viral proteins on basic cellular functions such as cell cycle regulation and programed cell death are discussed. Potential applications of using yeasts as hosts to carry out functional analysis of small viral genome and to develop high throughput drug screening platform for the discovery of antiviral drugs are presented. PMID:29082230

  5. Initiation and evolution of the Oligo-Miocene rift basins of southwestern Europe: Contribution of deep seismic reflection profiling

    Science.gov (United States)

    Bois, C.

    1993-11-01

    Southwestern European Oligo-Miocene rift basins have recently been investigated by deep seismic reflection profiling. The study of these data, together with other geophysical and geological data, shows that the rifts, which run from the Rhinegraben to the western Mediterranean, do not form a single clearcut system. The N-trending rifts (Rhinegraben, Bresse and Limagne) were developed on a cold and rigid lithosphere affected by the Alpine collision. The NE-trending rifts (southeastern France, Gulf of Lions and Valencia Trough) were formed slightly later in a backarc basin associated with an active segment of the European-Iberian plate that was heated, affected by widespread calcalkaline volcanism and probably weakened. All the southwestern European rifts and basins together may, however, be related to a common heritage represented by the boundary between the European-Iberian and African-Apulian plates that was created in the Jurassic with the initiation of the Tethys Ocean. The present features of the southwestern European Oligo-Miocène rift basins may be explained by a combination of three geodynamic mechanisms: mechanical stretching of the lithosphere, active mantle uplifting, and subordinate lithospheric flexuring. All the rifts were probably initiated by passive stretching. A systematic discrepancy between stretching derived from fault analysis and attenuation of the crust has been observed in all the rifts. This suggests that these rifts were subsequently reworked by one or several active mantle upwelling events associated with late shoulder uplift, asthenosphere upwelling and anomalous P-wave velocities in the lowermost crust and the uppermost mantle. Crustal attenuation may have been achieved by mantle intrusion, metamorphism of the deep crust and/or its delamination. Some of the rifts were affected by lithospheric flexuring. Combinations, in various proportions, of a small number of geodynamic mechanisms probably controlled many basins in the world. This

  6. Special Issue: Honey Bee Viruses

    Directory of Open Access Journals (Sweden)

    Sebastian Gisder

    2015-10-01

    Full Text Available Pollination of flowering plants is an important ecosystem service provided by wild insect pollinators and managed honey bees. Hence, losses and declines of pollinating insect species threaten human food security and are of major concern not only for apiculture or agriculture but for human society in general. Honey bee colony losses and bumblebee declines have attracted intensive research interest over the last decade and although the problem is far from being solved we now know that viruses are among the key players of many of these bee losses and bumblebee declines. With this special issue on bee viruses we, therefore, aimed to collect high quality original papers reflecting the current state of bee virus research. To this end, we focused on newly discovered viruses (Lake Sinai viruses, bee macula-like virus, or a so far neglected virus species (Apis mellifera filamentous virus, and cutting edge technologies (mass spectrometry, RNAi approach applied in the field.

  7. Special Issue: Honey Bee Viruses

    Science.gov (United States)

    Gisder, Sebastian; Genersch, Elke

    2015-01-01

    Pollination of flowering plants is an important ecosystem service provided by wild insect pollinators and managed honey bees. Hence, losses and declines of pollinating insect species threaten human food security and are of major concern not only for apiculture or agriculture but for human society in general. Honey bee colony losses and bumblebee declines have attracted intensive research interest over the last decade and although the problem is far from being solved we now know that viruses are among the key players of many of these bee losses and bumblebee declines. With this special issue on bee viruses we, therefore, aimed to collect high quality original papers reflecting the current state of bee virus research. To this end, we focused on newly discovered viruses (Lake Sinai viruses, bee macula-like virus), or a so far neglected virus species (Apis mellifera filamentous virus), and cutting edge technologies (mass spectrometry, RNAi approach) applied in the field. PMID:26702462

  8. Diversity of viruses in Ixodes ricinus, and characterization of a neurotropic strain of Eyach virus.

    Science.gov (United States)

    Moutailler, S; Popovici, I; Devillers, E; Vayssier-Taussat, M; Eloit, M

    2016-05-01

    Ticks transmit more pathogens-including bacteria, parasites and viruses-than any other arthropod vector. Although the epidemiological status of many tick-borne bacteria is very well characterized, tick-borne viruses are still relatively under-studied. Recently, several novel tick-borne viruses have been isolated from human febrile illnesses following tick bites, indicating the existence of other potential new and unknown tick-borne viruses. We used high-throughput sequencing to analyse the virome of Ixodes ricinus, the main vector of tick-borne pathogens in Europe. The majority of collected viral sequences were assigned to two potentially novel Nairovirus and Phlebovirus viruses, with prevalence rates ranging from 3.95% to 23.88% in adults and estimated to be between 0.14% and 72.16% in nymphs. These viruses could not be isolated from the brains of inoculated immunocompromised mice, perhaps indicating that they are unable to infect vertebrates. Within the I. ricinus virome, we also identified contigs with >90% identity to the known Eyach virus. Initially isolated in the 1980s, this virus was indirectly associated with human disease, but had never been extensively studied. Eyach virus prevalence varied between 0.07% and 5.26% in ticks from the French Ardennes and Alsace regions. Eyach virus was successfully isolated following intracerebral inoculation of immunocompromised mice with Eyach virus-positive tick extracts. This virus was also able to multiply and persist in the blood of immunocompetent mice inoculated by intraperitoneal injection, and caused brain infections in three of nine juveniles, without any obvious deleterious effects.

  9. Zika Virus: An Emerging Worldwide Threat

    OpenAIRE

    Irfan A. Rather; Jameel B. Lone; Vivek K. Bajpai; Woon K. Paek; Jeongheui Lim

    2017-01-01

    ZIKA virus (ZIKV) poses a severe threat to the world. Recent outbreaks of ZIKV after 2007 along with its quick transmission have made this virus a matter of international concern. The virus shows symptoms that are similar to those caused in the wake of dengue virus (DENV) and other flaviviruses, which makes it difficult to discern the viral infection. Diagnosis is further complicated as the virus cross-reacts with antibodies of other viruses. Currently, molecular diagnosis of the virus is bei...

  10. How hepatitis D virus can hinder the control of hepatitis B virus.

    Directory of Open Access Journals (Sweden)

    Maria Xiridou

    Full Text Available BACKGROUND: Hepatitis D (or hepatitis delta virus is a defective virus that relies on hepatitis B virus (HBV for transmission; infection with hepatitis D can occur only as coinfection with HBV or superinfection of an existing HBV infection. Because of the bond between the two viruses, control measures for HBV may have also affected the spread of hepatitis D, as evidenced by the decline of hepatitis D in recent years. Since the presence of hepatitis D is associated with suppressed HBV replication and possibly infectivity, it is reasonable to speculate that hepatitis D may facilitate the control of HBV. METHODOLOGY AND PRINCIPAL FINDINGS: We introduced a mathematical model for the transmission of HBV and hepatitis D, where individuals with dual HBV and hepatitis D infection transmit both viruses. We calculated the reproduction numbers of single HBV infections and dual HBV and hepatitis D infections and examined the endemic prevalences of the two viruses. The results show that hepatitis D virus modulates not only the severity of the HBV epidemic, but also the impact of interventions for HBV. Surprisingly we find that the presence of hepatitis D virus may hamper the eradication of HBV. Interventions that aim to reduce the basic reproduction number of HBV below one may not be sufficient to eradicate the virus, as control of HBV depends also on the reproduction numbers of dual infections. CONCLUSIONS AND SIGNIFICANCE: For populations where hepatitis D is endemic, plans for control programs ignoring the presence of hepatitis D may underestimate the HBV epidemic and produce overoptimistic results. The current HBV surveillance should be augmented with monitoring of hepatitis D, in order to improve accuracy of the monitoring and the efficacy of control measures.

  11. Archaeal viruses of the sulfolobales

    DEFF Research Database (Denmark)

    Erdmann, Susanne; Garrett, Roger Antony

    2015-01-01

    in CRISPR loci of Sulfolobus species from a second coinfecting conjugative plasmid or virus (Erdmann and Garrett, Mol Microbiol 85:1044-1056, 2012; Erdmann et al. Mol Microbiol 91:900-917, 2014). Here we describe, firstly, the isolation of archaeal virus mixtures from terrestrial hot springs...... with an environmental virus mixture isolated from Yellowstone National Park (Erdmann and Garrett, Mol Microbiol 85:1044-1056, 2012). Experimental studies of isolated genetic elements from this mixture revealed that SMV1 (S ulfolobus Monocauda Virus 1), a tailed spindle-shaped virus, can induce spacer acquisition...... and the techniques used both to infect laboratory strains with these virus mixtures and to obtain purified virus particles. Secondly, we present the experimental conditions required for activating SMV1-induced spacer acquisition in two different Sulfolobus species....

  12. Factors Influencing Institutional-Based Pediatric Rehabilitation Services among Caregivers of Children with Developmental Delay in Southwestern Rajasthan

    OpenAIRE

    Mishra, Kriti; Siddharth, V.

    2018-01-01

    Context: A limited number of caregivers of children with developmental delay access rehabilitation facilities in India. The study explored utilization of rehabilitation services at a tertiary care setup in southwestern Rajasthan and various factors influencing it. Aims: The aim of this study is to explore rehabilitation service utilization among children with developmental delay at a tertiary care setup and to ascertain factors that influence this pattern. Settings: This study was conducted a...

  13. Seasonal and pandemic human influenza viruses attach better to human upper respiratory tract epithelium than avian influenza viruses.

    Science.gov (United States)

    van Riel, Debby; den Bakker, Michael A; Leijten, Lonneke M E; Chutinimitkul, Salin; Munster, Vincent J; de Wit, Emmie; Rimmelzwaan, Guus F; Fouchier, Ron A M; Osterhaus, Albert D M E; Kuiken, Thijs

    2010-04-01

    Influenza viruses vary markedly in their efficiency of human-to-human transmission. This variation has been speculated to be determined in part by the tropism of influenza virus for the human upper respiratory tract. To study this tropism, we determined the pattern of virus attachment by virus histochemistry of three human and three avian influenza viruses in human nasal septum, conchae, nasopharynx, paranasal sinuses, and larynx. We found that the human influenza viruses-two seasonal influenza viruses and pandemic H1N1 virus-attached abundantly to ciliated epithelial cells and goblet cells throughout the upper respiratory tract. In contrast, the avian influenza viruses, including the highly pathogenic H5N1 virus, attached only rarely to epithelial cells or goblet cells. Both human and avian viruses attached occasionally to cells of the submucosal glands. The pattern of virus attachment was similar among the different sites of the human upper respiratory tract for each virus tested. We conclude that influenza viruses that are transmitted efficiently among humans attach abundantly to human upper respiratory tract, whereas inefficiently transmitted influenza viruses attach rarely. These results suggest that the ability of an influenza virus to attach to human upper respiratory tract is a critical factor for efficient transmission in the human population.

  14. Entomologic inoculation rates of Anopheles arabiensis in southwestern Ethiopia.

    Science.gov (United States)

    Massebo, Fekadu; Balkew, Meshesha; Gebre-Michael, Teshome; Lindtjørn, Bernt

    2013-09-01

    We collected anophelines every second week for one year from randomly selected houses in southwestern Ethiopia by using Centers for Disease Control (CDC) light traps, pyrethrum spray catches, and artificial pit shelter constructions to detect circumsporozoite proteins and estimate entomologic inoculation rates (EIRs). Of 3,678 Anopheles arabiensis tested for circumsporozoite proteins, 11 were positive for Plasmodium falciparum and three for P. vivax. The estimated annual P. falciparum EIR of An. arabiensis was 17.1 infectious bites per person per year (95% confidence interval = 7.03-34.6) based on CDC light traps and 0.1 infectious bites per person per year based on pyrethrum spray catches. The P. falciparum EIRs from CDC light traps varied from 0 infectious bites per person per year (in 60% of houses) to 73.2 infectious bites per person per year in the house nearest the breeding sites. Risk of exposure to infectious bites was higher in wet months than dry months, with a peak in April (9.6 infectious bites per person per month), the period of highest mosquito density.

  15. MIDDLE TRIASSIC AUTOCLASTIC DEPOSITS FROM SOUTHWESTERN BOSNIA AND HERZEGOVINA

    Directory of Open Access Journals (Sweden)

    Duje Smirčić

    2016-06-01

    Full Text Available Middle Triassic volcanic and volcaniclastic rocks have been recognized at several localities near Bosansko Grahovo, in southwestern part of Bosnia and Herzegovina in the External Dinarides. Peculiar types of autoclastic rocks were investigated. These are peperites and hyaloclastites. Regarding specific structures, mineral composition and micropetrographic characteristics it was possible to further differentiate hyaloclastites into in situ hyaloclastites and slightly resedimented hyaloclastites that represent genetic succession. All rock types occurred in a deep sea troughs that formed as a consequence of Middle Triassic extensional tectonic and rift related wrench faulting. In situ hyaloclastites and slightly resedimented hyaloclastites were formed due to quenching at the contact of lava effusions with sea water. Genesis of peperites is related to lava emplacement in unconsolidated water saturated lime mudstones that were deposited in deep sea basin. All investigated rock types represent first findings of autoclastic deposits in the External Dinarides. Biostratigraphic constraints achieved by means of conodont species Neogondolella excentrica, Paragondolella excelsa, Paragondolella trammeri and Gladigondolella tethydis indicate Late Anisian to Early Ladinian interval of the autoclastic deposits from Bosansko Grahovo.

  16. Mutagenesis-mediated virus extinction: virus-dependent effect of viral load on sensitivity to lethal defection.

    Directory of Open Access Journals (Sweden)

    Héctor Moreno

    Full Text Available BACKGROUND: Lethal mutagenesis is a transition towards virus extinction mediated by enhanced mutation rates during viral genome replication, and it is currently under investigation as a potential new antiviral strategy. Viral load and virus fitness are known to influence virus extinction. Here we examine the effect or the multiplicity of infection (MOI on progeny production of several RNA viruses under enhanced mutagenesis. RESULTS: The effect of the mutagenic base analogue 5-fluorouracil (FU on the replication of the arenavirus lymphocytic choriomeningitis virus (LCMV can result either in inhibition of progeny production and virus extinction in infections carried out at low multiplicity of infection (MOI, or in a moderate titer decrease without extinction at high MOI. The effect of the MOI is similar for LCMV and vesicular stomatitis virus (VSV, but minimal or absent for the picornaviruses foot-and-mouth disease virus (FMDV and encephalomyocarditis virus (EMCV. The increase in mutation frequency and Shannon entropy (mutant spectrum complexity as a result of virus passage in the presence of FU was more accentuated at low MOI for LCMV and VSV, and at high MOI for FMDV and EMCV. We present an extension of the lethal defection model that agrees with the experimental results. CONCLUSIONS: (i Low infecting load favoured the extinction of negative strand viruses, LCMV or VSV, with an increase of mutant spectrum complexity. (ii This behaviour is not observed in RNA positive strand viruses, FMDV or EMCV. (iii The accumulation of defector genomes may underlie the MOI-dependent behaviour. (iv LCMV coinfections are allowed but superinfection is strongly restricted in BHK-21 cells. (v The dissimilar effects of the MOI on the efficiency of mutagenic-based extinction of different RNA viruses can have implications for the design of antiviral protocols based on lethal mutagenesis, presently under development.

  17. Coinfection of hepatitis E virus and other hepatitis virus in Colombia and its genotypic characterization.

    Science.gov (United States)

    Peláez, Dioselina; Martínez-Vargas, Daniel; Escalante-Mora, Martha; Palacios-Vivero, Mariel; Contreras-Gómez, Lady

    2015-12-04

    Hepatitis E virus has emerged as a public health problem, particularly in developing countries. The four genotypes identified in mammals include the G3 found in indigenous hepatitis in countries and regions with high porcine population, and the G1, associated with maternal deaths.  To determine coinfection by hepatitis E virus and the circulating genotypes in Colombia in 1,097 samples using serological markers for hepatitis A, B and C.  Serum samples of 1,097 patients from different regions of Colombia stored at the Laboratorio de Virología of the Instituto Nacional de Salud were selected to detect IgG and IgM anti-hepatitis E virus antibodies. The viral genomes of positive samples were amplified by RT-PCR, and the products were sequenced and phylogenetically analyzed by comparing ORF2 sequences deposited in the GenBank.  IgG anti-hepatitis E virus antibodies were found in 278 samples, IgM in 62, and both markers in 64. Hepatitis E virus and hepatitis A virus coinfection determined by IgG anti-hepatitis E virus was 33.6% and 16.1% by IgM; hepatitis E virus and hepatitis B virus coinfection was 23.4% and 8.1%, and hepatitis E virus and hepatitis C virus coinfection was 35.4% and 5.83%, respectively. Among the 52 positive samples by PCR nine were sequenced and grouped within genotype 3A of the American porcine strain.  The highest seropositivity was observed for hepatitis A and E. The incidence of hepatitis E virus coinfection with other hepatotropic viruses indicated that this pathogen is more frequent than expected. The circulation of genotype 3A implies that this disease may occur in outbreaks and as zoonosis in Colombia.

  18. Comparative Pathology of Hepatitis A Virus and Hepatitis E Virus Infection.

    Science.gov (United States)

    Cullen, John M; Lemon, Stanley M

    2018-04-30

    Hepatitis A virus (HAV) and hepatitis E virus (HEV) cause acute, self-limiting hepatic infections that are usually spread by the fecal-oral route in humans. Naturally occurring and experimental infections are possible in a variety of nonhuman primates and, in the case of HEV, a number of other species. Many advances in understanding the pathogenesis of these viruses have come from studies in experimental animals. In general, animals infected with these viruses recapitulate the histologic lesions seen in infected humans, but typically with less severe clinical and histopathological manifestations. This review describes the histopathologic changes associated with HAV and HEV infection in humans and experimental animals. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

  19. [Zika virus infection during pregnancy].

    Science.gov (United States)

    Picone, O; Vauloup-Fellous, C; D'Ortenzio, E; Huissoud, C; Carles, G; Benachi, A; Faye, A; Luton, D; Paty, M-C; Ayoubi, J-M; Yazdanpanah, Y; Mandelbrot, L; Matheron, S

    2016-05-01

    A Zika virus epidemic is currently ongoing in the Americas. This virus is linked to congenital infections with potential severe neurodevelopmental dysfunction. However, incidence of fetal infection and whether this virus is responsible of other fetal complications are still unknown. National and international public health authorities recommend caution and several prevention measures. Declaration of Zika virus infection is now mandatory in France. Given the available knowledge on Zika virus, we suggest here a review of the current recommendations for management of pregnancy in case of suspicious or infection by Zika virus in a pregnant woman. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  20. Computer virus information update CIAC-2301

    Energy Technology Data Exchange (ETDEWEB)

    Orvis, W.J.

    1994-01-15

    While CIAC periodically issues bulletins about specific computer viruses, these bulletins do not cover all the computer viruses that affect desktop computers. The purpose of this document is to identify most of the known viruses for the MS-DOS and Macintosh platforms and give an overview of the effects of each virus. The authors also include information on some windows, Atari, and Amiga viruses. This document is revised periodically as new virus information becomes available. This document replaces all earlier versions of the CIAC Computer virus Information Update. The date on the front cover indicates date on which the information in this document was extracted from CIAC`s Virus database.

  1. Human immunodeficiency virus and hepatitus B virus co-infection ...

    African Journals Online (AJOL)

    Human immunodeficiency virus and hepatitus B virus co-infection amog patients in Kano Nigeria. EE Nwokedi, MA Emokpae, AI Dutse. Abstract. No Abstract. Nigerian Journal of Medicine Vol. 15(3) July-September 2006: 227-229. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD ...

  2. Vaccination with Recombinant Parainfluenza Virus 5 Expressing Neuraminidase Protects against Homologous and Heterologous Influenza Virus Challenge.

    Science.gov (United States)

    Mooney, Alaina J; Gabbard, Jon D; Li, Zhuo; Dlugolenski, Daniel A; Johnson, Scott K; Tripp, Ralph A; He, Biao; Tompkins, S Mark

    2017-12-01

    Seasonal human influenza virus continues to cause morbidity and mortality annually, and highly pathogenic avian influenza (HPAI) viruses along with other emerging influenza viruses continue to pose pandemic threats. Vaccination is considered the most effective measure for controlling influenza; however, current strategies rely on a precise vaccine match with currently circulating virus strains for efficacy, requiring constant surveillance and regular development of matched vaccines. Current vaccines focus on eliciting specific antibody responses against the hemagglutinin (HA) surface glycoprotein; however, the diversity of HAs across species and antigenic drift of circulating strains enable the evasion of virus-inhibiting antibody responses, resulting in vaccine failure. The neuraminidase (NA) surface glycoprotein, while diverse, has a conserved enzymatic site and presents an appealing target for priming broadly effective antibody responses. Here we show that vaccination with parainfluenza virus 5 (PIV5), a promising live viral vector expressing NA from avian (H5N1) or pandemic (H1N1) influenza virus, elicited NA-specific antibody and T cell responses, which conferred protection against homologous and heterologous influenza virus challenges. Vaccination with PIV5-N1 NA provided cross-protection against challenge with a heterosubtypic (H3N2) virus. Experiments using antibody transfer indicate that antibodies to NA have an important role in protection. These findings indicate that PIV5 expressing NA may be effective as a broadly protective vaccine against seasonal influenza and emerging pandemic threats. IMPORTANCE Seasonal influenza viruses cause considerable morbidity and mortality annually, while emerging viruses pose potential pandemic threats. Currently licensed influenza virus vaccines rely on the antigenic match of hemagglutinin (HA) for vaccine strain selection, and most vaccines rely on HA inhibition titers to determine efficacy, despite the growing

  3. Influenza A virus targets a cGAS-independent STING pathway that controls enveloped RNA viruses.

    Science.gov (United States)

    Holm, Christian K; Rahbek, Stine H; Gad, Hans Henrik; Bak, Rasmus O; Jakobsen, Martin R; Jiang, Zhaozaho; Hansen, Anne Louise; Jensen, Simon K; Sun, Chenglong; Thomsen, Martin K; Laustsen, Anders; Nielsen, Camilla G; Severinsen, Kasper; Xiong, Yingluo; Burdette, Dara L; Hornung, Veit; Lebbink, Robert Jan; Duch, Mogens; Fitzgerald, Katherine A; Bahrami, Shervin; Mikkelsen, Jakob Giehm; Hartmann, Rune; Paludan, Søren R

    2016-02-19

    Stimulator of interferon genes (STING) is known be involved in control of DNA viruses but has an unexplored role in control of RNA viruses. During infection with DNA viruses STING is activated downstream of cGAMP synthase (cGAS) to induce type I interferon. Here we identify a STING-dependent, cGAS-independent pathway important for full interferon production and antiviral control of enveloped RNA viruses, including influenza A virus (IAV). Further, IAV interacts with STING through its conserved hemagglutinin fusion peptide (FP). Interestingly, FP antagonizes interferon production induced by membrane fusion or IAV but not by cGAMP or DNA. Similar to the enveloped RNA viruses, membrane fusion stimulates interferon production in a STING-dependent but cGAS-independent manner. Abolishment of this pathway led to reduced interferon production and impaired control of enveloped RNA viruses. Thus, enveloped RNA viruses stimulate a cGAS-independent STING pathway, which is targeted by IAV.

  4. Enhanced light microscopy visualization of virus particles from Zika virus to filamentous ebolaviruses.

    Directory of Open Access Journals (Sweden)

    George G Daaboul

    Full Text Available Light microscopy is a powerful tool in the detection and analysis of parasites, fungi, and prokaryotes, but has been challenging to use for the detection of individual virus particles. Unlabeled virus particles are too small to be visualized using standard visible light microscopy. Characterization of virus particles is typically performed using higher resolution approaches such as electron microscopy or atomic force microscopy. These approaches require purification of virions away from their normal millieu, requiring significant levels of expertise, and can only enumerate small numbers of particles per field of view. Here, we utilize a visible light imaging approach called Single Particle Interferometric Reflectance Imaging Sensor (SP-IRIS that allows automated counting and sizing of thousands of individual virions. Virions are captured directly from complex solutions onto a silicon chip and then detected using a reflectance interference imaging modality. We show that the use of different imaging wavelengths allows the visualization of a multitude of virus particles. Using Violet/UV illumination, the SP-IRIS technique is able to detect individual flavivirus particles (~40 nm, while green light illumination is capable of identifying and discriminating between vesicular stomatitis virus and vaccinia virus (~360 nm. Strikingly, the technology allows the clear identification of filamentous infectious ebolavirus particles and virus-like particles. The ability to differentiate and quantify unlabeled virus particles extends the usefulness of traditional light microscopy and can be embodied in a straightforward benchtop approach allowing widespread applications ranging from rapid detection in biological fluids to analysis of virus-like particles for vaccine development and production.

  5. Cowpea viruses: Effect of single and mixed infections on symptomatology and virus concentration

    Directory of Open Access Journals (Sweden)

    Nsa Imade Y

    2007-09-01

    Full Text Available Abstract Natural multiple viral infections of cultivated cowpeas have been reported in Nigeria. In this study, three Nigerian commercial cowpea cultivars ("Olo 11", "Oloyin" and "White" and two lines from the IITA (IT86D- 719 and TVU 76 were mechanically inoculated with Cowpea aphid-borne mosaic virus (CABMV, Bean southern mosaic virus (SBMV and Cowpea mottle virus (CMeV singly, as well as in all possible combinations at 10, 20 and 30 days after planting (DAP. Samples of leaves or stems were collected at 10, 20 and 30 days after inoculation (DAI and analyzed for relative virus concentration by Enzyme-Linked Immunosrbent Assay. All the cultivars and lines {CVS/L} were susceptible to the viruses but the commercial CVS showed more severe symptoms and had relatively higher viral concentration. In single virus infections, CABMV which induced the most severe symptoms had absorbance values (at 405 nm of 0.11 to 0.46 while SBMV and CMeV which induced moderate symptoms had virus titre of 0.74 to 1.99 and 0.11 to 0.90 respectively. Plants inoculated 10 DAP had significantly higher virus concentration than those inoculated 30 DAP. In mixed infections involving CABMV (10 DAP apical necrosis and death were observed in commercial cultivars "Olo 11" and "White". Enhancement of CMeV titers were observed in plants infected with CMeV + CABMV. Multiple viral infections of cowpeas may result in complete yield loss, hence, the availability of seeds of cultivars with a high level of multiple virus resistance is recommended as a means of control.

  6. Genome Sequence of Bivens Arm Virus, a Tibrovirus Belonging to the Species Tibrogargan virus (Mononegavirales: Rhabdoviridae).

    Science.gov (United States)

    Lauck, Michael; Yú, Shu Qìng; Caì, Yíngyún; Hensley, Lisa E; Chiu, Charles Y; O'Connor, David H; Kuhn, Jens H

    2015-03-19

    The new rhabdoviral genus Tibrovirus currently has two members, Coastal Plains virus and Tibrogargan virus. Here, we report the coding-complete genome sequence of a putative member of this genus, Bivens Arm virus. A genomic comparison reveals Bivens Arm virus to be closely related to, but distinct from, Tibrogargan virus. Copyright © 2015 Lauck et al.

  7. Replication and clearance of respiratory syncytial virus - Apoptosis is an important pathway of virus clearance after experimental infection with bovine respiratory syncytial virus

    DEFF Research Database (Denmark)

    Viuff, B.; Tjørnehøj, Kirsten; Larsen, Lars Erik

    2002-01-01

    and clearance in a natural target animal. Replication of BRSV was demonstrated in the luminal part of the respiratory epithelial cells and replication in the upper respiratory tract preceded the replication in the lower respiratory tract. Virus excreted to the lumen of the respiratory tract was cleared...... and the infections with human respiratory syncytial. virus and BRSV have similar clinical, pathological, and epidemiological characteristics. In this study we used experimental BRSV infection in calves as a model of respiratory syncytial virus infection to demonstrate important aspects of viral replication......Human respiratory syncytial virus is an important cause of severe respiratory disease in young children, the elderly, and in immunocompromised adults. Similarly, bovine respiratory syncytial virus (BRSV) is causing severe, sometimes fatal, respiratory disease in calves. Both viruses are pneumovirus...

  8. Temporal Analysis of Andes Virus and Sin Nombre Virus Infections of Syrian Hamsters

    Science.gov (United States)

    2007-05-01

    Microbiology . All Rights Reserved. Temporal Analysis of Andes Virus and Sin Nombre Virus Infections of Syrian Hamsters Victoria Wahl-Jensen,1 Jennifer...Ye, C., J. Prescott , R. Nofchissey, D. Goade, and B. Hjelle. 2004. Neutralizing antibodies and Sin Nombre virus RNA after recovery from hantavirus

  9. Monitoring virus entry into living cells using DiD-labeled dengue virus particles

    NARCIS (Netherlands)

    Ayala Nunez, Vanesa; Wilschut, Jan; Smit, Jolanda M.

    2011-01-01

    A variety of approaches can be applied to investigate the multiple steps and interactions that occur during virus entry into the host cell. Single-virus tracking is a powerful real-time imaging technique that offers the possibility to monitor virus-cell binding, internalization, intracellular

  10. Neutralizing antibodies against flaviviruses, Babanki virus, and Rift Valley fever virus in Ugandan bats.

    Science.gov (United States)

    Kading, Rebekah C; Kityo, Robert M; Mossel, Eric C; Borland, Erin M; Nakayiki, Teddie; Nalikka, Betty; Nyakarahuka, Luke; Ledermann, Jeremy P; Panella, Nicholas A; Gilbert, Amy T; Crabtree, Mary B; Peterhans, Julian Kerbis; Towner, Jonathan S; Amman, Brian R; Sealy, Tara K; Nichol, Stuart T; Powers, Ann M; Lutwama, Julius J; Miller, Barry R

    2018-01-01

    Introduction: A number of arboviruses have previously been isolated from naturally-infected East African bats, however the role of bats in arbovirus maintenance is poorly understood. The aim of this study was to investigate the exposure history of Ugandan bats to a panel of arboviruses. Materials and methods: Insectivorous and fruit bats were captured from multiple locations throughout Uganda during 2009 and 2011-2013. All serum samples were tested for neutralizing antibodies against West Nile virus (WNV), yellow fever virus (YFV), dengue 2 virus (DENV-2), Zika virus (ZIKV), Babanki virus (BBKV), and Rift Valley fever virus (RVFV) by plaque reduction neutralization test (PRNT). Sera from up to 626 bats were screened for antibodies against each virus. Results and Discussion:  Key findings include the presence of neutralizing antibodies against RVFV in 5/52 (9.6%) of little epauletted fruit bats ( Epomophorus labiatus ) captured from Kawuku and 3/54 (5.6%) Egyptian rousette bats from Kasokero cave. Antibodies reactive to flaviviruses were widespread across bat taxa and sampling locations. Conclusion: The data presented demonstrate the widespread exposure of bats in Uganda to arboviruses, and highlight particular virus-bat associations that warrant further investigation.

  11. Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship.

    Science.gov (United States)

    Johannessen, Torill Vik; Larsen, Aud; Bratbak, Gunnar; Pagarete, António; Edvardsen, Bente; Egge, Elianne D; Sandaa, Ruth-Anne

    2017-04-20

    Viruses influence the ecology and diversity of phytoplankton in the ocean. Most studies of phytoplankton host-virus interactions have focused on bloom-forming species like Emiliania huxleyi or Phaeocystis spp. The role of viruses infecting phytoplankton that do not form conspicuous blooms have received less attention. Here we explore the dynamics of phytoplankton and algal viruses over several sequential seasons, with a focus on the ubiquitous and diverse phytoplankton division Haptophyta, and their double-stranded DNA viruses, potentially with the capacity to infect the haptophytes. Viral and phytoplankton abundance and diversity showed recurrent seasonal changes, mainly explained by hydrographic conditions. By 454 tag-sequencing we revealed 93 unique haptophyte operational taxonomic units (OTUs), with seasonal changes in abundance. Sixty-one unique viral OTUs, representing Megaviridae and Phycodnaviridae , showed only distant relationship with currently isolated algal viruses. Haptophyte and virus community composition and diversity varied substantially throughout the year, but in an uncoordinated manner. A minority of the viral OTUs were highly abundant at specific time-points, indicating a boom-bust relationship with their host. Most of the viral OTUs were very persistent, which may represent viruses that coexist with their hosts, or able to exploit several host species.

  12. Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections

    Directory of Open Access Journals (Sweden)

    Müller Marcel A

    2005-02-01

    Full Text Available Abstract Ten potential reference genes were compared for their use in experiments investigating cellular mRNA expression of virus infected cells. Human cell lines were infected with Cytomegalovirus, Human Herpesvirus-6, Camelpox virus, SARS coronavirus or Yellow fever virus. The expression levels of these genes and the viral replication were determined by real-time PCR. Genes were ranked by the BestKeeper tool, the GeNorm tool and by criteria we reported previously. Ranking lists of the genes tested were tool dependent. However, over all, β-actin is an unsuitable as reference gene, whereas TATA-Box binding protein and peptidyl-prolyl-isomerase A are stable reference genes for expression studies in virus infected cells.

  13. C- Reactive Protein in Tuberculosis and Human Immunodeficiency ...

    African Journals Online (AJOL)

    This study was conducted to evaluate C-reactive protein (CRP) levels in Mycobacterium tuberculosis and human immunodeficiency virus (HIV) infections and the follow-up therapeutic response to tuberculosis (TB) among patients aged 19-68 years attending out-patient clinics of two hospitals in Abeokuta, Southwestern ...

  14. Filovirus pathogenesis and immune evasion: insights from Ebola virus and Marburg virus

    Energy Technology Data Exchange (ETDEWEB)

    Messaoudi, Ilhem; Amarasinghe, Gaya K.; Basler, Christopher F.

    2015-10-06

    Ebola viruses and Marburg viruses, members of the filovirus family, are zoonotic pathogens that cause severe disease in people, as highlighted by the latest Ebola virus epidemic in West Africa. Filovirus disease is characterized by uncontrolled virus replication and the activation of host responses that contribute to pathogenesis. Underlying these phenomena is the potent suppression of host innate antiviral responses, particularly the type I interferon response, by viral proteins, which allows high levels of viral replication. In this Review, we describe the mechanisms used by filoviruses to block host innate immunity and discuss the links between immune evasion and filovirus pathogenesis.

  15. PREFACE The physics of virus assembly The physics of virus assembly

    Science.gov (United States)

    Stockley, Peter G.; Twarock, Reidun

    2010-12-01

    Viruses are pathogens in every kingdom of life and are major causes of human disease and suffering. They are known to encompass a size range that overlaps with that of the smallest bacterial cells, and the largest viruses now seem to be hosts of their own viral pathogens. Recent genomic sequencing efforts show that many organisms have genes that are likely to be descended in evolution from viral progenitors. Even more astonishingly, analysis of the world's oceans has shown that some of the simplest viruses, the tailed dsDNA phages, are the most common biological entities on the planet, with estimates of their numbers ranging up to 1031, with ~ 1021 infection events every second, leading to a turnover of around 20% of the biomass in the sea every few days. These cycles of infection and lysis of oceanic bacteria and algae provide the nutrients for the smallest organisms lying at the bottom of the food chain. Without viruses, therefore, life on Earth would probably not be sustainable. These are remarkable facts for systems that are non-living in the strict sense, and are composed of simple materials—nucleic acids, proteins and lipids. Many viruses consist of little more than a protective protein coat surrounding their genomic nucleic acids, which can be either DNA or RNA. Their simplicity leads to highly symmetrical structures with protein containers based on helical or icosahedral lattices. Many simple viruses self-assemble rapidly and with great fidelity, and many groups are busy trying to exploit these properties to make virus-like particles for a wide range of applications, including targeted drug-delivery, medical imaging and even novel materials. This issue of Physical Biology contains a series of papers describing some of the latest experimental and theoretical research on viruses, their structures and assembly, as well as their regulated disassembly during infection. These range from a dissection of the in vivo assembly mechanism of a filamentous virus

  16. Secondary forest succession and tree planting at the Laguna Cartagena and Cabo Rojo wildlife refuges in southwestern Puerto Rico

    Science.gov (United States)

    P.L. Weaver; J.J. Schwagerl

    2008-01-01

    Secondary forest succession and tree planting are contributing to the recovery of the Cabo Rojo refuge (Headquarters and Salinas tracts) and Laguna Cartagena refuge (Lagoon and Tinaja tracts) of the Fish and Wildlife Service in southwestern Puerto Rico. About 80 species, mainly natives, have been planted on 44 ha during the past 25 y in an effort to reduce the threat...

  17. Coping with Computer Viruses: General Discussion and Review of Symantec Anti-Virus for the Macintosh.

    Science.gov (United States)

    Primich, Tracy

    1992-01-01

    Discusses computer viruses that attack the Macintosh and describes Symantec AntiVirus for Macintosh (SAM), a commercial program designed to detect and eliminate viruses; sample screen displays are included. SAM is recommended for use in library settings as well as two public domain virus protection programs. (four references) (MES)

  18. Precipitation Intensity Effects on Groundwater Recharge in the Southwestern United States

    Directory of Open Access Journals (Sweden)

    Brian F. Thomas

    2016-03-01

    Full Text Available Episodic recharge as a result of infrequent, high intensity precipitation events comprises the bulk of groundwater recharge in arid environments. Climate change and shifts in precipitation intensity will affect groundwater continuity, thus altering groundwater recharge. This study aims to identify changes in the ratio of groundwater recharge and precipitation, the R:P ratio, in the arid southwestern United States to characterize observed changes in groundwater recharge attributed to variations in precipitation intensity. Our precipitation metric, precipitation intensity magnification, was used to investigate the relationship between the R:P ratio and precipitation intensity. Our analysis identified significant changes in the R:P ratio concurrent with decreases in precipitation intensity. The results illustrate the importance of precipitation intensity in relation to groundwater recharge in arid regions and provide further insights for groundwater management in nonrenewable groundwater systems and in a changing climate.

  19. Presence and Distribution of Oilseed Pumpkin Viruses and Molecular Detection of Zucchini Yellow Mosaic Virus

    Directory of Open Access Journals (Sweden)

    Ana Vučurović

    2009-01-01

    Full Text Available Over the past decade, intensive spread of virus infections of oilseed pumpkin has resulted in significant economic losses in pumpkin crop production, which is currently expanding in our country. In 2007 and 2008, a survey for the presence and distribution of oilseed pumpkin viruses was carried out in order to identify viruses responsible for epidemics and incidences of very destructive symptoms on cucurbit leaves and fruits. Monitoring andcollecting samples of oil pumpkin, as well as other species such as winter and butternut squash and buffalo and bottle gourd with viral infection symptoms, was conducted in several localities of Vojvodina Province. The collected plant samples were tested by DAS-ELISA using polyclonal antisera specific for the detection of six most economically harmful pumpkin viruses: Cucumber mosaic virus (CMV, Zucchini yellow mosaic virus (ZYMV, Watermelon mosaic virus (WMW, Squash mosaic virus (SqMV, Papaya ringspot virus (PRSV and Tobaccoringspot virus (TRSV that are included in A1 quarantine list of harmful organisms in Serbia.Identification of viruses in the collected samples indicated the presence of three viruses, ZYMV, WMV and CMV, in individual and mixed infections. Frequency of the identified viruses varied depending on locality and year of investigations. In 2007, WMV was the most frequent virus (94.2%, while ZYMV was prevalent (98.04% in 2008. High frequency of ZYMV determined in both years of investigation indicated the need for its rapid and reliable molecular detection. During this investigation, a protocol for ZYMVdetection was developed and optimized using specific primers CPfwd/Cprev and commercial kits for total RNA extraction, as well as for RT-PCR. In RT-PCR reaction using these primers, a DNA fragment of approximately 1100 bp, which included coat protein gene, was amplified in the samples of infected pumkin leaves. Although serological methods are still useful for large-scale testing of a great number of

  20. Archaeal virus-host interactions

    NARCIS (Netherlands)

    Quax, T.E.F.

    2013-01-01

    The work presented in this thesis provides novel insights in several aspects of the molecular

    biology of archaea, bacteria and their viruses.

    Three fundamentally different groups of viruses are associated with the three domains of life.

    Archaeal viruses are