IMPROVING THE CLUSTER PERFORMANCE BY COMBINING PSO AND K-MEANS ALGORITHM
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G. Komarasamy
2011-04-01
Full Text Available Clustering is a technique that can divide data objects into groups based on information found in the data that describes the objects and their relationships. In this paper describe to improving the clustering performance by combine Particle Swarm Optimization (PSO and K-means algorithm. The PSO algorithm successfully converges during the initial stages of a global search, but around global optimum, the search process will become very slow. On the contrary, K-means algorithm can achieve faster convergence to optimum solution. Unlike K-means method, new algorithm does not require a specific number of clusters given before performing the clustering process and it is able to find the local optimal number of clusters during the clustering process. In each iteration process, the inertia weight was changed based on the current iteration and best fitness. The experimental result shows that better performance of new algorithm by using different data sets.
An Improved Fuzzy c-Means Clustering Algorithm Based on Shadowed Sets and PSO
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Jian Zhang
2014-01-01
Full Text Available To organize the wide variety of data sets automatically and acquire accurate classification, this paper presents a modified fuzzy c-means algorithm (SP-FCM based on particle swarm optimization (PSO and shadowed sets to perform feature clustering. SP-FCM introduces the global search property of PSO to deal with the problem of premature convergence of conventional fuzzy clustering, utilizes vagueness balance property of shadowed sets to handle overlapping among clusters, and models uncertainty in class boundaries. This new method uses Xie-Beni index as cluster validity and automatically finds the optimal cluster number within a specific range with cluster partitions that provide compact and well-separated clusters. Experiments show that the proposed approach significantly improves the clustering effect.
An Enhanced PSO-Based Clustering Energy Optimization Algorithm for Wireless Sensor Network.
Vimalarani, C; Subramanian, R; Sivanandam, S N
2016-01-01
Wireless Sensor Network (WSN) is a network which formed with a maximum number of sensor nodes which are positioned in an application environment to monitor the physical entities in a target area, for example, temperature monitoring environment, water level, monitoring pressure, and health care, and various military applications. Mostly sensor nodes are equipped with self-supported battery power through which they can perform adequate operations and communication among neighboring nodes. Maximizing the lifetime of the Wireless Sensor networks, energy conservation measures are essential for improving the performance of WSNs. This paper proposes an Enhanced PSO-Based Clustering Energy Optimization (EPSO-CEO) algorithm for Wireless Sensor Network in which clustering and clustering head selection are done by using Particle Swarm Optimization (PSO) algorithm with respect to minimizing the power consumption in WSN. The performance metrics are evaluated and results are compared with competitive clustering algorithm to validate the reduction in energy consumption.
An Enhanced PSO-Based Clustering Energy Optimization Algorithm for Wireless Sensor Network
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C. Vimalarani
2016-01-01
Full Text Available Wireless Sensor Network (WSN is a network which formed with a maximum number of sensor nodes which are positioned in an application environment to monitor the physical entities in a target area, for example, temperature monitoring environment, water level, monitoring pressure, and health care, and various military applications. Mostly sensor nodes are equipped with self-supported battery power through which they can perform adequate operations and communication among neighboring nodes. Maximizing the lifetime of the Wireless Sensor networks, energy conservation measures are essential for improving the performance of WSNs. This paper proposes an Enhanced PSO-Based Clustering Energy Optimization (EPSO-CEO algorithm for Wireless Sensor Network in which clustering and clustering head selection are done by using Particle Swarm Optimization (PSO algorithm with respect to minimizing the power consumption in WSN. The performance metrics are evaluated and results are compared with competitive clustering algorithm to validate the reduction in energy consumption.
ENHANCED HYBRID PSO – ACO ALGORITHM FOR GRID SCHEDULING
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P. Mathiyalagan
2010-07-01
Full Text Available Grid computing is a high performance computing environment to solve larger scale computational demands. Grid computing contains resource management, task scheduling, security problems, information management and so on. Task scheduling is a fundamental issue in achieving high performance in grid computing systems. A computational GRID is typically heterogeneous in the sense that it combines clusters of varying sizes, and different clusters typically contains processing elements with different level of performance. In this, heuristic approaches based on particle swarm optimization and ant colony optimization algorithms are adopted for solving task scheduling problems in grid environment. Particle Swarm Optimization (PSO is one of the latest evolutionary optimization techniques by nature. It has the better ability of global searching and has been successfully applied to many areas such as, neural network training etc. Due to the linear decreasing of inertia weight in PSO the convergence rate becomes faster, which leads to the minimal makespan time when used for scheduling. To make the convergence rate faster, the PSO algorithm is improved by modifying the inertia parameter, such that it produces better performance and gives an optimized result. The ACO algorithm is improved by modifying the pheromone updating rule. ACO algorithm is hybridized with PSO algorithm for efficient result and better convergence in PSO algorithm.
PSO Algorithm for an Optimal Power Controller in a Microgrid
Al-Saedi, W.; Lachowicz, S.; Habibi, D.; Bass, O.
2017-07-01
This paper presents the Particle Swarm Optimization (PSO) algorithm to improve the quality of the power supply in a microgrid. This algorithm is proposed for a real-time selftuning method that used in a power controller for an inverter based Distributed Generation (DG) unit. In such system, the voltage and frequency are the main control objectives, particularly when the microgrid is islanded or during load change. In this work, the PSO algorithm is implemented to find the optimal controller parameters to satisfy the control objectives. The results show high performance of the applied PSO algorithm of regulating the microgrid voltage and frequency.
SUPER-SAPSO: A New SA-Based PSO Algorithm
Bahrepour, M.; Mahdipour, E.; Cheloi, R.; Yaghoobi, M.
2008-01-01
Swarm Optimisation (PSO) has been received increasing attention due to its simplicity and reasonable convergence speed surpassing genetic algorithm in some circumstances. In order to improve convergence speed or to augment the exploration area within the solution space to find a better optimum
The Parameters Selection of PSO Algorithm influencing On performance of Fault Diagnosis
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He Yan
2016-01-01
Full Text Available The particle swarm optimization (PSO is an optimization algorithm based on intelligent optimization. Parameters selection of PSO will play an important role in performance and efficiency of the algorithm. In this paper, the performance of PSO is analyzed when the control parameters vary, including particle number, accelerate constant, inertia weight and maximum limited velocity. And then PSO with dynamic parameters has been applied on the neural network training for gearbox fault diagnosis, the results with different parameters of PSO are compared and analyzed. At last some suggestions for parameters selection are proposed to improve the performance of PSO.
A Novel Assembly Line Balancing Method Based on PSO Algorithm
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Xiaomei Hu
2014-01-01
Full Text Available Assembly line is widely used in manufacturing system. Assembly line balancing problem is a crucial question during design and management of assembly lines since it directly affects the productivity of the whole manufacturing system. The model of assembly line balancing problem is put forward and a general optimization method is proposed. The key data on assembly line balancing problem is confirmed, and the precedence relations diagram is described. A double objective optimization model based on takt time and smoothness index is built, and balance optimization scheme based on PSO algorithm is proposed. Through the simulation experiments of examples, the feasibility and validity of the assembly line balancing method based on PSO algorithm is proved.
Pipeline Implementation of Polyphase PSO for Adaptive Beamforming Algorithm
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Shaobing Huang
2017-01-01
Full Text Available Adaptive beamforming is a powerful technique for anti-interference, where searching and tracking optimal solutions are a great challenge. In this paper, a partial Particle Swarm Optimization (PSO algorithm is proposed to track the optimal solution of an adaptive beamformer due to its great global searching character. Also, due to its naturally parallel searching capabilities, a novel Field Programmable Gate Arrays (FPGA pipeline architecture using polyphase filter bank structure is designed. In order to perform computations with large dynamic range and high precision, the proposed implementation algorithm uses an efficient user-defined floating-point arithmetic. In addition, a polyphase architecture is proposed to achieve full pipeline implementation. In the case of PSO with large population, the polyphase architecture can significantly save hardware resources while achieving high performance. Finally, the simulation results are presented by cosimulation with ModelSim and SIMULINK.
An Orthogonal Multi-Swarm Cooperative PSO Algorithm with a Particle Trajectory Knowledge Base
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Jun Yang
2017-01-01
Full Text Available A novel orthogonal multi-swarm cooperative particle swarm optimization (PSO algorithm with a particle trajectory knowledge base is presented in this paper. Different from the traditional PSO algorithms and other variants of PSO, the proposed orthogonal multi-swarm cooperative PSO algorithm not only introduces an orthogonal initialization mechanism and a particle trajectory knowledge base for multi-dimensional optimization problems, but also conceives a new adaptive cooperation mechanism to accomplish the information interaction among swarms and particles. Experiments are conducted on a set of benchmark functions, and the results show its better performance compared with traditional PSO algorithm in aspects of convergence, computational efficiency and avoiding premature convergence.
A Modified MinMax k-Means Algorithm Based on PSO
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Xiaoyan Wang
2016-01-01
Full Text Available The MinMax k-means algorithm is widely used to tackle the effect of bad initialization by minimizing the maximum intraclustering errors. Two parameters, including the exponent parameter and memory parameter, are involved in the executive process. Since different parameters have different clustering errors, it is crucial to choose appropriate parameters. In the original algorithm, a practical framework is given. Such framework extends the MinMax k-means to automatically adapt the exponent parameter to the data set. It has been believed that if the maximum exponent parameter has been set, then the programme can reach the lowest intraclustering errors. However, our experiments show that this is not always correct. In this paper, we modified the MinMax k-means algorithm by PSO to determine the proper values of parameters which can subject the algorithm to attain the lowest clustering errors. The proposed clustering method is tested on some favorite data sets in several different initial situations and is compared to the k-means algorithm and the original MinMax k-means algorithm. The experimental results indicate that our proposed algorithm can reach the lowest clustering errors automatically.
Implementation and comparison of PSO-based algorithms for multi-modal optimization problems
Sriyanyong, Pichet; Lu, Haiyan
2013-10-01
This paper aims to compare the global search capability and overall performance of a number of Particle Swarm Optimization (PSO) based algorithms in the context solving the Dynamic Economic Dispatch (DED) problem which takes into account the operation limitations of generation units such as valve-point loading effect as well as ramp rate limits. The comparative study uses six PSO-based algorithms including the basic PSO and hybrid PSO algorithms using a popular benchmark test IEEE power system which is 10-unit 24-hour system with non-smooth cost functions. The experimental results show that one of the hybrid algorithms that combines the PSO with both inertia weight and constriction factor, and the Gaussian mutation operator (CBPSO-GM) is promising in achieving the near global optimal of a non-linear multi-modal optimization problem, such as the DED problem under the consideration.
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Lhassane Idoumghar
2011-01-01
When a local optimal solution is reached with PSO, all particles gather around it, and escaping from this local optima becomes difficult. To avoid premature convergence of PSO, we present a new hybrid evolutionary algorithm, called HPSO-SA, based on the idea that PSO ensures fast convergence, while SA brings the search out of local optima because of its strong local-search ability. The proposed HPSO-SA algorithm is validated on ten standard benchmark multimodal functions for which we obtained significant improvements. The results are compared with these obtained by existing hybrid PSO-SA algorithms. In this paper, we provide also two versions of HPSO-SA (sequential and distributed for minimizing the energy consumption in embedded systems memories. The two versions, of HPSO-SA, reduce the energy consumption in memories from 76% up to 98% as compared to Tabu Search (TS. Moreover, the distributed version of HPSO-SA provides execution time saving of about 73% up to 84% on a cluster of 4 PCs.
Using PSO-Based Hierarchical Feature Selection Algorithm
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Zhiwei Ji
2014-01-01
Full Text Available Hepatocellular carcinoma (HCC is one of the most common malignant tumors. Clinical symptoms attributable to HCC are usually absent, thus often miss the best therapeutic opportunities. Traditional Chinese Medicine (TCM plays an active role in diagnosis and treatment of HCC. In this paper, we proposed a particle swarm optimization-based hierarchical feature selection (PSOHFS model to infer potential syndromes for diagnosis of HCC. Firstly, the hierarchical feature representation is developed by a three-layer tree. The clinical symptoms and positive score of patient are leaf nodes and root in the tree, respectively, while each syndrome feature on the middle layer is extracted from a group of symptoms. Secondly, an improved PSO-based algorithm is applied in a new reduced feature space to search an optimal syndrome subset. Based on the result of feature selection, the causal relationships of symptoms and syndromes are inferred via Bayesian networks. In our experiment, 147 symptoms were aggregated into 27 groups and 27 syndrome features were extracted. The proposed approach discovered 24 syndromes which obviously improved the diagnosis accuracy. Finally, the Bayesian approach was applied to represent the causal relationships both at symptom and syndrome levels. The results show that our computational model can facilitate the clinical diagnosis of HCC.
A Hybrid Bacterial Foraging - PSO Algorithm Based Tuning of Optimal FOPI Speed Controller
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Rajasekhar Anguluri
2011-11-01
Full Text Available Bacterial Foraging Optimization Algorithm (BFOA has recently emerged as a very powerful technique for real parameteroptimization. In order to overcome the delay in optimization and to further enhance the performance of BFO, this paper proposeda new hybrid algorithm combining the features of BFOA and Particle Swarm Optimization (PSO for tuning a Fractional orderspeed controller in a Permanent Magnet Synchronous Motor (PMSM Drive. Computer simulations illustrate the effectiveness of theproposed approach compared to that of basic versions of PSO and BFO.
A Novel Modification of PSO Algorithm for SML Estimation of DOA.
Chen, Haihua; Li, Shibao; Liu, Jianhang; Liu, Fen; Suzuki, Masakiyo
2016-12-19
This paper addresses the issue of reducing the computational complexity of Stochastic Maximum Likelihood (SML) estimation of Direction-of-Arrival (DOA). The SML algorithm is well-known for its high accuracy of DOA estimation in sensor array signal processing. However, its computational complexity is very high because the estimation of SML criteria is a multi-dimensional non-linear optimization problem. As a result, it is hard to apply the SML algorithm to real systems. The Particle Swarm Optimization (PSO) algorithm is considered as a rather efficient method for multi-dimensional non-linear optimization problems in DOA estimation. However, the conventional PSO algorithm suffers two defects, namely, too many particles and too many iteration times. Therefore, the computational complexity of SML estimation using conventional PSO algorithm is still a little high. To overcome these two defects and to reduce computational complexity further, this paper proposes a novel modification of the conventional PSO algorithm for SML estimation and we call it Joint-PSO algorithm. The core idea of the modification lies in that it uses the solution of Estimation of Signal Parameters via Rotational Invariance Techniques (ESPRIT) and stochastic Cramer-Rao bound (CRB) to determine a novel initialization space. Since this initialization space is already close to the solution of SML, fewer particles and fewer iteration times are needed. As a result, the computational complexity can be greatly reduced. In simulation, we compare the proposed algorithm with the conventional PSO algorithm, the classic Altering Minimization (AM) algorithm and Genetic algorithm (GA). Simulation results show that our proposed algorithm is one of the most efficient solving algorithms and it shows great potential for the application of SML in real systems.
A Novel Modification of PSO Algorithm for SML Estimation of DOA
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Haihua Chen
2016-12-01
Full Text Available This paper addresses the issue of reducing the computational complexity of Stochastic Maximum Likelihood (SML estimation of Direction-of-Arrival (DOA. The SML algorithm is well-known for its high accuracy of DOA estimation in sensor array signal processing. However, its computational complexity is very high because the estimation of SML criteria is a multi-dimensional non-linear optimization problem. As a result, it is hard to apply the SML algorithm to real systems. The Particle Swarm Optimization (PSO algorithm is considered as a rather efficient method for multi-dimensional non-linear optimization problems in DOA estimation. However, the conventional PSO algorithm suffers two defects, namely, too many particles and too many iteration times. Therefore, the computational complexity of SML estimation using conventional PSO algorithm is still a little high. To overcome these two defects and to reduce computational complexity further, this paper proposes a novel modification of the conventional PSO algorithm for SML estimation and we call it Joint-PSO algorithm. The core idea of the modification lies in that it uses the solution of Estimation of Signal Parameters via Rotational Invariance Techniques (ESPRIT and stochastic Cramer-Rao bound (CRB to determine a novel initialization space. Since this initialization space is already close to the solution of SML, fewer particles and fewer iteration times are needed. As a result, the computational complexity can be greatly reduced. In simulation, we compare the proposed algorithm with the conventional PSO algorithm, the classic Altering Minimization (AM algorithm and Genetic algorithm (GA. Simulation results show that our proposed algorithm is one of the most efficient solving algorithms and it shows great potential for the application of SML in real systems.
Distribution Network Expansion Planning Based on Multi-objective PSO Algorithm
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Zhang, Chunyu; Ding, Yi; Wu, Qiuwei
2013-01-01
This paper presents a novel approach for electrical distribution network expansion planning using multi-objective particle swarm optimization (PSO). The optimization objectives are: investment and operation cost, energy losses cost, and power congestion cost. A two-phase multi-objective PSO...... algorithm was proposed to solve this optimization problem, which can accelerate the convergence and guarantee the diversity of Pareto-optimal front set as well. The feasibility and effectiveness of both the proposed multi-objective planning approach and the improved multi-objective PSO have been verified...
An improved PSO algorithm for parameter identification of nonlinear dynamic hysteretic models
Zhang, Junhao; Xia, Pinqi
2017-02-01
The nonlinear dynamic hysteretic models used in nonlinear dynamic analysis contain generally lots of model parameters which need to be identified accurately and effectively. The accuracy and effectiveness of identification depend generally on the complexity of model, number of model parameters and proximity of initial values of the parameters. The particle swarm optimization (PSO) algorithm has the random searching ability and has been widely applied to the parameter identification in the nonlinear dynamic hysteretic models. However, the PSO algorithm may get trapped in the local optimum and appear the premature convergence not to obtain the real optimum results. In this paper, an improved PSO algorithm for identifying parameters of nonlinear dynamic hysteretic models has been presented by defining a fitness function for hysteretic model. The improved PSO algorithm can enhance the global searching ability and avoid to appear the premature convergence of the conventional PSO algorithm, and has been applied to identify the parameters of two nonlinear dynamic hysteretic models which are the Leishman-Beddoes (LB) dynamic stall model of rotor blade and the anelastic displacement fields (ADF) model of elastomeric damper which can be used as the lead-lag damper in rotor. The accuracy and effectiveness of the improved PSO algorithm for identifying parameters of the LB model and the ADF model are validated by comparing the identified results with test results. The investigations have indicated that in order to reduce the influence of randomness caused by using the PSO algorithm on the accuracy of identified parameters, it is an effective method to increase the number of repeated identifications.
Measuring the performance of FCM versus PSO for fuzzy clustering problems
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Amir Reza Soltani
2013-06-01
Full Text Available Clustering cellular manufacturing plays an important role in many industrial engineering problems. This paper investigates the performance of two methods of heuristic and metaheuristics fuzzy clustering. The proposed method investigates heuristic well-known FCM and particle swarm optimization (PSO on some well-known benchmarks. We use two criteria of J(P as well as Xie-Beni to compare the results. Three parameters of PSO method is tuned using design of experiment and then the results of PSO are compared versus FCM method in terms of two mentioned criteria. The proposed models are run for each instance 10 different times and, using ANOVA test, the means of two methods are compared. While the results of ANOVA do not indicate any meaningful difference between PSO and FCM in terms of J(P, we have found some meaningful differences between PSO and FCM in terms of Xie-Beni criterion. In other words, PSO performs better than FCM in terms of Xie-Beni.
Fuzzified PSO Algorithm for OPF with FACTS Devices in Interconnected Power Systems
Jothi Swaroopan, N. M.; Somasundaram, P.
This paper presents a new computationally efficient improved stochastic algorithm for solving Optimal Power Flow (OPF) in interconnected power systems with FACTS devices. This proposed technique is based on the combined application of Fuzzy logic strategy incorporated in Particle Swarm Optimization (PSO) algorithm, hence named as Fuzzified PSO (FPSO). The FACTS devices considered here include Static Var Compensator (SVC), Static Synchronous Compensator (STATCOM), Thyristor Controlled Series Capacitor (TCSC) and Unified Power Flow Controller (UPFC). The proposed method is tested on single area IEEE 30-bus system and interconnected two area systems. The optimal solutions obtained using Evolutionary Programming (EP), PSO and FPSO are compared and analyzed. The analysis reveals that the proposed algorithm is relatively simple, efficient and reliable.
A Clustering Approach Using Cooperative Artificial Bee Colony Algorithm
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Wenping Zou
2010-01-01
Full Text Available Artificial Bee Colony (ABC is one of the most recently introduced algorithms based on the intelligent foraging behavior of a honey bee swarm. This paper presents an extended ABC algorithm, namely, the Cooperative Article Bee Colony (CABC, which significantly improves the original ABC in solving complex optimization problems. Clustering is a popular data analysis and data mining technique; therefore, the CABC could be used for solving clustering problems. In this work, first the CABC algorithm is used for optimizing six widely used benchmark functions and the comparative results produced by ABC, Particle Swarm Optimization (PSO, and its cooperative version (CPSO are studied. Second, the CABC algorithm is used for data clustering on several benchmark data sets. The performance of CABC algorithm is compared with PSO, CPSO, and ABC algorithms on clustering problems. The simulation results show that the proposed CABC outperforms the other three algorithms in terms of accuracy, robustness, and convergence speed.
Fuzzy PID control algorithm based on PSO and application in BLDC motor
Lin, Sen; Wang, Guanglong
2017-06-01
A fuzzy PID control algorithm is studied based on improved particle swarm optimization (PSO) to perform Brushless DC (BLDC) motor control which has high accuracy, good anti-jamming capability and steady state accuracy compared with traditional PID control. The mathematical and simulation model is established for BLDC motor by simulink software, and the speed loop of the fuzzy PID controller is designed. The simulation results show that the fuzzy PID control algorithm based on PSO has higher stability, high control precision and faster dynamic response speed.
Research of converter transformer fault diagnosis based on improved PSO-BP algorithm
Long, Qi; Guo, Shuyong; Li, Qing; Sun, Yong; Li, Yi; Fan, Youping
2017-09-01
To overcome those disadvantages that BP (Back Propagation) neural network and conventional Particle Swarm Optimization (PSO) converge at the global best particle repeatedly in early stage and is easy trapped in local optima and with low diagnosis accuracy when being applied in converter transformer fault diagnosis, we come up with the improved PSO-BP neural network to improve the accuracy rate. This algorithm improves the inertia weight Equation by using the attenuation strategy based on concave function to avoid the premature convergence of PSO algorithm and Time-Varying Acceleration Coefficient (TVAC) strategy was adopted to balance the local search and global search ability. At last the simulation results prove that the proposed approach has a better ability in optimizing BP neural network in terms of network output error, global searching performance and diagnosis accuracy.
Utilization of PSO algorithm in estimation of water level change of Lake Beysehir
Buyukyildiz, Meral; Tezel, Gulay
2017-04-01
In this study, unlike backpropagation algorithm which gets local best solutions, the usefulness of particle swarm optimization (PSO) algorithm, a population-based optimization technique with a global search feature, inspired by the behavior of bird flocks, in determination of parameters of support vector machines (SVM) and adaptive network-based fuzzy inference system (ANFIS) methods was investigated. For this purpose, the performances of hybrid PSO-ɛ support vector regression (PSO-ɛSVR) and PSO-ANFIS models were studied to estimate water level change of Lake Beysehir in Turkey. The change in water level was also estimated using generalized regression neural network (GRNN) method, an iterative training procedure. Root mean square error (RMSE), mean absolute error (MAE), and coefficient of determination ( R 2) were used to compare the obtained results. Efforts were made to estimate water level change (L) using different input combinations of monthly inflow-lost flow (I), precipitation (P), evaporation (E), and outflow (O). According to the obtained results, the other methods except PSO-ANN generally showed significantly similar performances to each other. PSO-ɛSVR method with the values of minMAE = 0.0052 m, maxMAE = 0.04 m, and medianMAE = 0.0198 m; minRMSE = 0.0070 m, maxRMSE = 0.0518 m, and medianRMSE = 0.0241 m; min R 2 = 0.9169, max R 2 = 0.9995, median R 2 = 0.9909 for the I-P-E-O combination in testing period became superior in forecasting water level change of Lake Beysehir than the other methods. PSO-ANN models were the least successful models in all combinations.
Partitional clustering algorithms
2015-01-01
This book summarizes the state-of-the-art in partitional clustering. Clustering, the unsupervised classification of patterns into groups, is one of the most important tasks in exploratory data analysis. Primary goals of clustering include gaining insight into, classifying, and compressing data. Clustering has a long and rich history that spans a variety of scientific disciplines including anthropology, biology, medicine, psychology, statistics, mathematics, engineering, and computer science. As a result, numerous clustering algorithms have been proposed since the early 1950s. Among these algorithms, partitional (nonhierarchical) ones have found many applications, especially in engineering and computer science. This book provides coverage of consensus clustering, constrained clustering, large scale and/or high dimensional clustering, cluster validity, cluster visualization, and applications of clustering. Examines clustering as it applies to large and/or high-dimensional data sets commonly encountered in reali...
A Hybrid Algorithm Based on ACO and PSO for Capacitated Vehicle Routing Problems
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Yucheng Kao
2012-01-01
Full Text Available The vehicle routing problem (VRP is a well-known combinatorial optimization problem. It has been studied for several decades because finding effective vehicle routes is an important issue of logistic management. This paper proposes a new hybrid algorithm based on two main swarm intelligence (SI approaches, ant colony optimization (ACO and particle swarm optimization (PSO, for solving capacitated vehicle routing problems (CVRPs. In the proposed algorithm, each artificial ant, like a particle in PSO, is allowed to memorize the best solution ever found. After solution construction, only elite ants can update pheromone according to their own best-so-far solutions. Moreover, a pheromone disturbance method is embedded into the ACO framework to overcome the problem of pheromone stagnation. Two sets of benchmark problems were selected to test the performance of the proposed algorithm. The computational results show that the proposed algorithm performs well in comparison with existing swarm intelligence approaches.
DEMOCRATIC PSO ALGORITHM FOR THE ECONOMIC DISPATCH PROBLEM WITH VALVE-POINT EFFECTS
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SECUI D.C.
2015-09-01
Full Text Available This paper presents an optimization algorithm called Democratic Particle Swarm Optimization (DPSO, aiming to solve the economic dispatch problem. The DPSO algorithm is applied in the original version and also in a new version in which it is endowed with the chaotic Sine map (DPSO-Sine algorithm. The performance of DPSO and DPSOSine algorithms is tested on two systems having 13, and respectively 40 generating units. The results show that DPSO and DPSO-Sine have better performances than PSO algorithm and few other optimization techniques used to solve the economic dispatch problem.
A Multipopulation PSO Based Memetic Algorithm for Permutation Flow Shop Scheduling
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Ruochen Liu
2013-01-01
Full Text Available The permutation flow shop scheduling problem (PFSSP is part of production scheduling, which belongs to the hardest combinatorial optimization problem. In this paper, a multipopulation particle swarm optimization (PSO based memetic algorithm (MPSOMA is proposed in this paper. In the proposed algorithm, the whole particle swarm population is divided into three subpopulations in which each particle evolves itself by the standard PSO and then updates each subpopulation by using different local search schemes such as variable neighborhood search (VNS and individual improvement scheme (IIS. Then, the best particle of each subpopulation is selected to construct a probabilistic model by using estimation of distribution algorithm (EDA and three particles are sampled from the probabilistic model to update the worst individual in each subpopulation. The best particle in the entire particle swarm is used to update the global optimal solution. The proposed MPSOMA is compared with two recently proposed algorithms, namely, PSO based memetic algorithm (PSOMA and hybrid particle swarm optimization with estimation of distribution algorithm (PSOEDA, on 29 well-known PFFSPs taken from OR-library, and the experimental results show that it is an effective approach for the PFFSP.
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Mingjian Sun
2015-01-01
Full Text Available Photoacoustic imaging is an innovative imaging technique to image biomedical tissues. The time reversal reconstruction algorithm in which a numerical model of the acoustic forward problem is run backwards in time is widely used. In the paper, a time reversal reconstruction algorithm based on particle swarm optimization (PSO optimized support vector machine (SVM interpolation method is proposed for photoacoustics imaging. Numerical results show that the reconstructed images of the proposed algorithm are more accurate than those of the nearest neighbor interpolation, linear interpolation, and cubic convolution interpolation based time reversal algorithm, which can provide higher imaging quality by using significantly fewer measurement positions or scanning times.
An improved PSO algorithm for generating protective SNP barcodes in breast cancer.
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Li-Yeh Chuang
Full Text Available BACKGROUND: Possible single nucleotide polymorphism (SNP interactions in breast cancer are usually not investigated in genome-wide association studies. Previously, we proposed a particle swarm optimization (PSO method to compute these kinds of SNP interactions. However, this PSO does not guarantee to find the best result in every implement, especially when high-dimensional data is investigated for SNP-SNP interactions. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we propose IPSO algorithm to improve the reliability of PSO for the identification of the best protective SNP barcodes (SNP combinations and genotypes with maximum difference between cases and controls associated with breast cancer. SNP barcodes containing different numbers of SNPs were computed. The top five SNP barcode results are retained for computing the next SNP barcode with a one-SNP-increase for each processing step. Based on the simulated data for 23 SNPs of six steroid hormone metabolisms and signalling-related genes, the performance of our proposed IPSO algorithm is evaluated. Among 23 SNPs, 13 SNPs displayed significant odds ratio (OR values (1.268 to 0.848; p<0.05 for breast cancer. Based on IPSO algorithm, the jointed effect in terms of SNP barcodes with two to seven SNPs show significantly decreasing OR values (0.84 to 0.57; p<0.05 to 0.001. Using PSO algorithm, two to four SNPs show significantly decreasing OR values (0.84 to 0.77; p<0.05 to 0.001. Based on the results of 20 simulations, medians of the maximum differences for each SNP barcode generated by IPSO are higher than by PSO. The interquartile ranges of the boxplot, as well as the upper and lower hinges for each n-SNP barcode (n = 3∼10 are more narrow in IPSO than in PSO, suggesting that IPSO is highly reliable for SNP barcode identification. CONCLUSIONS/SIGNIFICANCE: Overall, the proposed IPSO algorithm is robust to provide exact identification of the best protective SNP barcodes for breast cancer.
Performance Enhancement of Distribution Network with DG Integration Using Modified PSO Algorithm
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Ramadoni Syahputra
2016-03-01
Full Text Available This paper addresses performance enhancement of distribution network with distributed generator (DG integration using modified particle swarm optimization (PSO algorithm. The effort of performance enhancement is done by using optimization of distribution network configuration. The objective of the optimization is minimizing active power loss and improving voltage profile while the distribution network is maintained in the radial structure. In this study, configuration optimization method is based on a modified PSO algorithm. The method has been tested in an IEEE model of 33-bus radial distribution network test system and a reallife radial distribution network of 60-bus Bantul distribution system, Indonesia. The simulation results show the importance of reconfiguring the network for enhancing the distribution network performance in the presence of DG.
ALE-PSO: An Adaptive Swarm Algorithm to Solve Design Problems of Laminates
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Paolo Vannucci
2009-04-01
Full Text Available This paper presents an adaptive PSO algorithm whose numerical parameters can be updated following a scheduled protocol respecting some known criteria of convergence in order to enhance the chances to reach the global optimum of a hard combinatorial optimization problem, such those encountered in global optimization problems of composite laminates. Some examples concerning hard design problems are provided, showing the effectiveness of the approach.
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Jie-Sheng Wang
2014-02-01
Full Text Available A mathematical model of electroslag remelting (ESR process is established based on its technical features and dynamic characteristics. A new multivariable self-tuning proportional-integral-derivative (PID controller tuned optimally by an improved particle swarm optimization (IPSO algorithm is proposed to control the two-input/two-output (TITO ESR process. An adaptive chaotic migration mutation operator is used to tackle the particles trapped in the clustering field in order to enhance the diversity of the particles in the population, prevent premature convergence and improve the search efficiency of PSO algorithm. The simulation results show the feasibility and effectiveness of the proposed control method. The new method can overcome dynamic working conditions and coupling features of the system in a wide range, and it has strong robustness and adaptability.
A hybrid ACO/PSO based algorithm for QoS multicast routing problem
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Manoj Kumar Patel
2014-03-01
Full Text Available Many Internet multicast applications such as videoconferencing, distance education, and online simulation require to send information from a source to some selected destinations. These applications have stringent Quality-of-Service (QoS requirements that include delay, loss rate, bandwidth, and delay jitter. This leads to the problem of routing multicast traffic satisfying QoS requirements. The above mentioned problem is known as the QoS constrained multicast routing problem and is NP Complete. In this paper, we present a swarming agent based intelligent algorithm using a hybrid Ant Colony Optimization (ACO/Particle Swarm Optimization (PSO technique to optimize the multicast tree. The algorithm starts with generating a large amount of mobile agents in the search space. The ACO algorithm guides the agents’ movement by pheromones in the shared environment locally, and the global maximum of the attribute values are obtained through the random interaction between the agents using PSO algorithm. The performance of the proposed algorithm is evaluated through simulation. The simulation results reveal that our algorithm performs better than the existing algorithms.
Wang, Jie-sheng; Li, Shu-xia; Gao, Jie
2014-01-01
For meeting the real-time fault diagnosis and the optimization monitoring requirements of the polymerization kettle in the polyvinyl chloride resin (PVC) production process, a fault diagnosis strategy based on the self-organizing map (SOM) neural network is proposed. Firstly, a mapping between the polymerization process data and the fault pattern is established by analyzing the production technology of polymerization kettle equipment. The particle swarm optimization (PSO) algorithm with a new dynamical adjustment method of inertial weights is adopted to optimize the structural parameters of SOM neural network. The fault pattern classification of the polymerization kettle equipment is to realize the nonlinear mapping from symptom set to fault set according to the given symptom set. Finally, the simulation experiments of fault diagnosis are conducted by combining with the industrial on-site historical data of the polymerization kettle and the simulation results show that the proposed PSO-SOM fault diagnosis strategy is effective.
Directory of Open Access Journals (Sweden)
Jie-sheng Wang
2014-01-01
Full Text Available For meeting the real-time fault diagnosis and the optimization monitoring requirements of the polymerization kettle in the polyvinyl chloride resin (PVC production process, a fault diagnosis strategy based on the self-organizing map (SOM neural network is proposed. Firstly, a mapping between the polymerization process data and the fault pattern is established by analyzing the production technology of polymerization kettle equipment. The particle swarm optimization (PSO algorithm with a new dynamical adjustment method of inertial weights is adopted to optimize the structural parameters of SOM neural network. The fault pattern classification of the polymerization kettle equipment is to realize the nonlinear mapping from symptom set to fault set according to the given symptom set. Finally, the simulation experiments of fault diagnosis are conducted by combining with the industrial on-site historical data of the polymerization kettle and the simulation results show that the proposed PSO-SOM fault diagnosis strategy is effective.
Optimal design of the generator of microturbine using genetic algorithm and PSO
Energy Technology Data Exchange (ETDEWEB)
Sadeghierad, M.; Lesani, H.; Monsef, H. [ECE Dept., University of Tehran, Tehran (Iran); Darabi, A. [Faculty of Elec. and Robotic Engineering, Shahrood Univ. of Tech. (Iran)
2010-09-15
Microturbine is one of the distributed power generation that produced electric in the remote and disastrous zones where grid power is unavailable. The design of its high-speed generator is much difficult and quite different from a conventional generator with low speed, because of high rotor speed and high frequency of the stator winding current. In this paper, the optimal design of this high speed axial flux generator (HSAFG) is introduced. The genetic algorithm and particle swarm optimization (PSO) are used for optimizing the efficiency of machine. PSO can show the better efficiency. At last, the influence of ratio of inner diameter to outer diameter (lambda) is discussed. The optimal lambda is between 0.3 and 0.5. (author)
Dynamic Power System Security Analysis Using a Hybrid PSO-APO Algorithm
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K. Teeparthi
2017-12-01
Full Text Available In this paper, a novel hybrid particle swarm optimization and artificial physics optimization (HPSO-APO algorithm is proposed to solve the dynamic security constrained optimal power flow (DSCOPF problem for enhancing system security. The dynamic security assessment deals with contingency analysis which is carried out using a performance index. DSCOPF recommends preventive control actions like generator rescheduling to alleviate an existing credible contingency in the system while ensuring minimal operating cost. The OPF problem is a highly nonlinear differential one and becomes more complex when considering the rotor dynamics of the system. The APO algorithm has the capability to reach a near global optimum value. However, it suffers from convergence problem. On the other hand, PSO exhibits premature convergence characteristics, but it may get trapped at a local optima value. The proposed HPSO-APO algorithm combines both individual algorithm strengths, to get balance between global and local search capability. The proposed method has been evaluated on a standard IEEE six-generator, 30-bus system and a New England ten-generator, 39-bus test system. The proposed HPSO-APO algorithm gives an efficient and robust optimal solution of DSCOPF problem compared to standard PSO and APO methods.
N, Sadhasivam; R, Balamurugan; M, Pandi
2018-01-27
Objective: Epigenetic modifications involving DNA methylation and histone statud are responsible for the stable maintenance of cellular phenotypes. Abnormalities may be causally involved in cancer development and therefore could have diagnostic potential. The field of epigenomics refers to all epigenetic modifications implicated in control of gene expression, with a focus on better understanding of human biology in both normal and pathological states. Epigenomics scientific workflow is essentially a data processing pipeline to automate the execution of various genome sequencing operations or tasks. Cloud platform is a popular computing platform for deploying large scale epigenomics scientific workflow. Its dynamic environment provides various resources to scientific users on a pay-per-use billing model. Scheduling epigenomics scientific workflow tasks is a complicated problem in cloud platform. We here focused on application of an improved particle swam optimization (IPSO) algorithm for this purpose. Methods: The IPSO algorithm was applied to find suitable resources and allocate epigenomics tasks so that the total cost was minimized for detection of epigenetic abnormalities of potential application for cancer diagnosis. Result: The results showed that IPSO based task to resource mapping reduced total cost by 6.83 percent as compared to the traditional PSO algorithm. Conclusion: The results for various cancer diagnosis tasks showed that IPSO based task to resource mapping can achieve better costs when compared to PSO based mapping for epigenomics scientific application workflow. Creative Commons Attribution License
Prathabrao, M.; Nawawi, Azli; Sidek, Noor Azizah
2017-04-01
Radio Frequency Identification (RFID) system has multiple benefits which can improve the operational efficiency of the organization. The advantages are the ability to record data systematically and quickly, reducing human errors and system errors, update the database automatically and efficiently. It is often more readers (reader) is needed for the installation purposes in RFID system. Thus, it makes the system more complex. As a result, RFID network planning process is needed to ensure the RFID system works perfectly. The planning process is also considered as an optimization process and power adjustment because the coordinates of each RFID reader to be determined. Therefore, algorithms inspired by the environment (Algorithm Inspired by Nature) is often used. In the study, PSO algorithm is used because it has few number of parameters, the simulation time is fast, easy to use and also very practical. However, PSO parameters must be adjusted correctly, for robust and efficient usage of PSO. Failure to do so may result in disruption of performance and results of PSO optimization of the system will be less good. To ensure the efficiency of PSO, this study will examine the effects of two parameters on the performance of PSO Algorithm in RFID tag coverage optimization. The parameters to be studied are the swarm size and iteration number. In addition to that, the study will also recommend the most optimal adjustment for both parameters that is, 200 for the no. iterations and 800 for the no. of swarms. Finally, the results of this study will enable PSO to operate more efficiently in order to optimize RFID network planning system.
On the optimization of electromagnetic geophysical data: Application of the PSO algorithm
Godio, A.; Santilano, A.
2018-01-01
Particle Swarm optimization (PSO) algorithm resolves constrained multi-parameter problems and is suitable for simultaneous optimization of linear and nonlinear problems, with the assumption that forward modeling is based on good understanding of ill-posed problem for geophysical inversion. We apply PSO for solving the geophysical inverse problem to infer an Earth model, i.e. the electrical resistivity at depth, consistent with the observed geophysical data. The method doesn't require an initial model and can be easily constrained, according to external information for each single sounding. The optimization process to estimate the model parameters from the electromagnetic soundings focuses on the discussion of the objective function to be minimized. We discuss the possibility to introduce in the objective function vertical and lateral constraints, with an Occam-like regularization. A sensitivity analysis allowed us to check the performance of the algorithm. The reliability of the approach is tested on synthetic, real Audio-Magnetotelluric (AMT) and Long Period MT data. The method appears able to solve complex problems and allows us to estimate the a posteriori distribution of the model parameters.
Energy Technology Data Exchange (ETDEWEB)
Assareh, E.; Behrang, M.A. [Department of Mechanical Engineering, Young Researchers Club, Islamic Azad University, Dezful Branch (Iran, Islamic Republic of); Assari, M.R. [Department of Mechanical Engineering, Engineering Faculty, Jundi Shapour University, Dezful (Iran, Islamic Republic of); Ghanbarzadeh, A. [Department of Mechanical Engineering, Engineering Faculty, Shahid Chamran University, Ahvaz (Iran, Islamic Republic of)
2010-12-15
This paper presents application of PSO (Particle Swarm Optimization) and GA (Genetic Algorithm) techniques to estimate oil demand in Iran, based on socio-economic indicators. The models are developed in two forms (exponential and linear) and applied to forecast oil demand in Iran. PSO-DEM and GA-DEM (PSO and GA demand estimation models) are developed to estimate the future oil demand values based on population, GDP (gross domestic product), import and export data. Oil consumption in Iran from 1981 to 2005 is considered as the case of this study. The available data is partly used for finding the optimal, or near optimal values of the weighting parameters (1981-1999) and partly for testing the models (2000-2005). For the best results of GA, the average relative errors on testing data were 2.83% and 1.72% for GA-DEM{sub exponential} and GA-DEM{sub linear}, respectively. The corresponding values for PSO were 1.40% and 1.36% for PSO-DEM{sub exponential} and PSO-DEM{sub linear}, respectively. Oil demand in Iran is forecasted up to year 2030. (author)
Research on bulbous bow optimization based on the improved PSO algorithm
Zhang, Sheng-long; Zhang, Bao-ji; Tezdogan, Tahsin; Xu, Le-ping; Lai, Yu-yang
2017-08-01
In order to reduce the total resistance of a hull, an optimization framework for the bulbous bow optimization was presented. The total resistance in calm water was selected as the objective function, and the overset mesh technique was used for mesh generation. RANS method was used to calculate the total resistance of the hull. In order to improve the efficiency and smoothness of the geometric reconstruction, the arbitrary shape deformation (ASD) technique was introduced to change the shape of the bulbous bow. To improve the global search ability of the particle swarm optimization (PSO) algorithm, an improved particle swarm optimization (IPSO) algorithm was proposed to set up the optimization model. After a series of optimization analyses, the optimal hull form was found. It can be concluded that the simulation based design framework built in this paper is a promising method for bulbous bow optimization.
Directory of Open Access Journals (Sweden)
Xiangdong Qian
2012-01-01
Full Text Available Delamination is a type of representative damage in composite structures, severely degrading structural integrity and reliability. The identification of delamination is commonly treated as an issue of nondestructive testing. Differing from existing studies, a hybrid optimization algorithm (HOA, combining particle swarm optimization (PSO with simplex method (SM, is proposed to identify delamination in laminated beams. The objective function of the optimization problem is created using delamination variables (optimization parameters together with actually measured modal frequencies. The HOA adopts a hierarchical and cooperative regime of global search and local search to optimize the objective function. The PSO performs global search for objective function space to achieve a preliminary solution specifying a local potential space. Initialized by this preliminary solution, the SM executes local search for the local potential space to explore the optimal solution. The HOA is validated by a series of simulated delamination scenarios, and the results show that it can identify delamination in laminated beams with decent accuracy, reliability and efficiency. The method proposed holds promise for establishing online damage detection system beneficial for health monitoring of laminated composite structures.
DEFF Research Database (Denmark)
Farhang, Peyman; Drimus, Alin; Mátéfi-Tempfli, Stefan
2015-01-01
In this paper, a new technique is proposed to design a Modified PID (MPID) controller for a Boost converter. An interface between LTspice and MATLAB is carried out to implement the Particle Swarm Optimization (PSO) algorithm. The PSO algorithm which has the appropriate capability to find out...... the optimal solutions is run in MATLAB while it is interfaced with LTspice for simulation of the circuit using actual component models obtained from manufacturers. The PSO is utilized to solve the optimization problem in order to find the optimal parameters of MPID and PID controllers. The performances...... of the controllers are evaluated for a wide range of operating conditions and different disturbances. The comprehensive simulation results demonstrate the effectiveness and robustness of the proposed method which are also explained through some performance indices....
Optimization of direct power control of three-phase shunt active power filter by using PSO algorithm
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Mohamed Rida BENGOURINA
2017-12-01
Full Text Available This paper presents the modelling and simulation of a three-phase shunt active power filter (SAPF using the direct power control (DPC based on the Particle Swarm Optimization (PSO algorithm for power quality improvement. In the DPC technique, the switches states of the inverter are selected from a table of switching based on the immediate errors between the active and reactive powers and their reference values. PSO algorithm is used in order to optimize the PI controller gains of the DC link voltage. This PI-PSO gives better results for robustness, harmonic minimization and reduces the overshoot and undershoot of PI controller. A MATLAB/SIMILINK simulation is provided to demonstrate the performance of the proposed approach.
Improved multi-objective clustering algorithm using particle swarm optimization.
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Congcong Gong
Full Text Available Multi-objective clustering has received widespread attention recently, as it can obtain more accurate and reasonable solution. In this paper, an improved multi-objective clustering framework using particle swarm optimization (IMCPSO is proposed. Firstly, a novel particle representation for clustering problem is designed to help PSO search clustering solutions in continuous space. Secondly, the distribution of Pareto set is analyzed. The analysis results are applied to the leader selection strategy, and make algorithm avoid trapping in local optimum. Moreover, a clustering solution-improved method is proposed, which can increase the efficiency in searching clustering solution greatly. In the experiments, 28 datasets are used and nine state-of-the-art clustering algorithms are compared, the proposed method is superior to other approaches in the evaluation index ARI.
Directory of Open Access Journals (Sweden)
Jie-Sheng Wang
2015-06-01
Full Text Available In order to improve the accuracy and real-time of all kinds of information in the cash business, and solve the problem which accuracy and stability is not high of the data linkage between cash inventory forecasting and cash management information in the commercial bank, a hybrid learning algorithm is proposed based on adaptive population activity particle swarm optimization (APAPSO algorithm combined with the least squares method (LMS to optimize the adaptive network-based fuzzy inference system (ANFIS model parameters. Through the introduction of metric function of population diversity to ensure the diversity of population and adaptive changes in inertia weight and learning factors, the optimization ability of the particle swarm optimization (PSO algorithm is improved, which avoids the premature convergence problem of the PSO algorithm. The simulation comparison experiments are carried out with BP-LMS algorithm and standard PSO-LMS by adopting real commercial banks’ cash flow data to verify the effectiveness of the proposed time series prediction of bank cash flow based on improved PSO-ANFIS optimization method. Simulation results show that the optimization speed is faster and the prediction accuracy is higher.
Swarm intelligence based on modified PSO algorithm for the optimization of axial-flow pump impeller
Energy Technology Data Exchange (ETDEWEB)
Miao, Fuqing; Kim, Chol Min; Ahn, Seok Young [Pusan National University, Busan (Korea, Republic of); Park, Hong Seok [Ulsan University, Ulsan (Korea, Republic of)
2015-11-15
This paper presents a multi-objective optimization of the impeller shape of an axial-flow pump based on the Modified particle swarm optimization (MPSO) algorithm. At first, an impeller shape was designed and used as a reference in the optimization process then NPSHr and η of the axial flow pump were numerically investigated by using the commercial software ANSYS with the design variables concerning hub angle β{sub h}, chord angle β{sub c}, cascade solidity of chord σ{sub c} and maximum thickness of blade H. By using the Group method of data handling (GMDH) type neural networks in commercial software DTREG, the corresponding polynomial representation for NPSHr and η with respect to the design variables were obtained. A benchmark test was employed to evaluate the performance of the MPSO algorithm in comparison with other particle swarm algorithms. Later the MPSO approach was used for Pareto based optimization. Finally, the MPSO optimization result and CFD simulation result were compared in a re-evaluation process. By using swarm intelligence based on the modified PSO algorithm, better performance pump with higher efficiency and lower NPSHr could be obtained. This novel algorithm was successfully applied for the optimization of axial-flow pump impeller shape design.
Recovery Rate of Clustering Algorithms
Li, Fajie; Klette, Reinhard; Wada, T; Huang, F; Lin, S
2009-01-01
This article provides a simple and general way for defining the recovery rate of clustering algorithms using a given family of old clusters for evaluating the performance of the algorithm when calculating a family of new clusters. Under the assumption of dealing with simulated data (i.e., known old
Algorithm and Implementation of Distributed ESN Using Spark Framework and Parallel PSO
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Kehe Wu
2017-04-01
Full Text Available The echo state network (ESN employs a huge reservoir with sparsely and randomly connected internal nodes and only trains the output weights, which avoids the suboptimal problem, exploding and vanishing gradients, high complexity and other disadvantages faced by traditional recurrent neural network (RNN training. In light of the outstanding adaption to nonlinear dynamical systems, ESN has been applied into a wide range of applications. However, in the era of Big Data, with an enormous amount of data being generated continuously every day, the data are often distributed and stored in real applications, and thus the centralized ESN training process is prone to being technologically unsuitable. In order to achieve the requirement of Big Data applications in the real world, in this study we propose an algorithm and its implementation for distributed ESN training. The mentioned algorithm is based on the parallel particle swarm optimization (P-PSO technique and the implementation uses Spark, a famous large-scale data processing framework. Four extremely large-scale datasets, including artificial benchmarks, real-world data and image data, are adopted to verify our framework on a stretchable platform. Experimental results indicate that the proposed work is accurate in the era of Big Data, regarding speed, accuracy and generalization capabilities.
Modeling of Energy Demand in the Greenhouse Using PSO-GA Hybrid Algorithms
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Jiaoliao Chen
2015-01-01
Full Text Available Modeling of energy demand in agricultural greenhouse is very important to maintain optimum inside environment for plant growth and energy consumption decreasing. This paper deals with the identification parameters for physical model of energy demand in the greenhouse using hybrid particle swarm optimization and genetic algorithms technique (HPSO-GA. HPSO-GA is developed to estimate the indistinct internal parameters of greenhouse energy model, which is built based on thermal balance. Experiments were conducted to measure environment and energy parameters in a cooling greenhouse with surface water source heat pump system, which is located in mid-east China. System identification experiments identify model parameters using HPSO-GA such as inertias and heat transfer constants. The performance of HPSO-GA on the parameter estimation is better than GA and PSO. This algorithm can improve the classification accuracy while speeding up the convergence process and can avoid premature convergence. System identification results prove that HPSO-GA is reliable in solving parameter estimation problems for modeling the energy demand in the greenhouse.
Multi-Scale Parameter Identification of Lithium-Ion Battery Electric Models Using a PSO-LM Algorithm
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Wen-Jing Shen
2017-03-01
Full Text Available This paper proposes a multi-scale parameter identification algorithm for the lithium-ion battery (LIB electric model by using a combination of particle swarm optimization (PSO and Levenberg-Marquardt (LM algorithms. Two-dimensional Poisson equations with unknown parameters are used to describe the potential and current density distribution (PDD of the positive and negative electrodes in the LIB electric model. The model parameters are difficult to determine in the simulation due to the nonlinear complexity of the model. In the proposed identification algorithm, PSO is used for the coarse-scale parameter identification and the LM algorithm is applied for the fine-scale parameter identification. The experiment results show that the multi-scale identification not only improves the convergence rate and effectively escapes from the stagnation of PSO, but also overcomes the local minimum entrapment drawback of the LM algorithm. The terminal voltage curves from the PDD model with the identified parameter values are in good agreement with those from the experiments at different discharge/charge rates.
Directory of Open Access Journals (Sweden)
Jun Sang
2015-08-01
Full Text Available Gyrator transform has been widely used for image encryption recently. For gyrator transform-based image encryption, the rotation angle used in the gyrator transform is one of the secret keys. In this paper, by analyzing the properties of the gyrator transform, an improved particle swarm optimization (PSO algorithm was proposed to search the rotation angle in a single gyrator transform. Since the gyrator transform is continuous, it is time-consuming to exhaustedly search the rotation angle, even considering the data precision in a computer. Therefore, a computational intelligence-based search may be an alternative choice. Considering the properties of severe local convergence and obvious global fluctuations of the gyrator transform, an improved PSO algorithm was proposed to be suitable for such situations. The experimental results demonstrated that the proposed improved PSO algorithm can significantly improve the efficiency of searching the rotation angle in a single gyrator transform. Since gyrator transform is the foundation of image encryption in gyrator transform domains, the research on the method of searching the rotation angle in a single gyrator transform is useful for further study on the security of such image encryption algorithms.
Directory of Open Access Journals (Sweden)
Kiran Teeparthi
2017-04-01
Full Text Available In this paper, a new low level with teamwork heterogeneous hybrid particle swarm optimization and artificial physics optimization (HPSO-APO algorithm is proposed to solve the multi-objective security constrained optimal power flow (MO-SCOPF problem. Being engaged with the environmental and total production cost concerns, wind energy is highly penetrating to the main grid. The total production cost, active power losses and security index are considered as the objective functions. These are simultaneously optimized using the proposed algorithm for base case and contingency cases. Though PSO algorithm exhibits good convergence characteristic, fails to give near optimal solution. On the other hand, the APO algorithm shows the capability of improving diversity in search space and also to reach a near global optimum point, whereas, APO is prone to premature convergence. The proposed hybrid HPSO-APO algorithm combines both individual algorithm strengths, to get balance between global and local search capability. The APO algorithm is improving diversity in the search space of the PSO algorithm. The hybrid optimization algorithm is employed to alleviate the line overloads by generator rescheduling during contingencies. The standard IEEE 30-bus and Indian 75-bus practical test systems are considered to evaluate the robustness of the proposed method. The simulation results reveal that the proposed HPSO-APO method is more efficient and robust than the standard PSO and APO methods in terms of getting diverse Pareto optimal solutions. Hence, the proposed hybrid method can be used for the large interconnected power system to solve MO-SCOPF problem with integration of wind and thermal generators.
Energy Technology Data Exchange (ETDEWEB)
Castellano, T.; De Palma, L.; Laneve, D.; Strippoli, V.; Cuccovilllo, A.; Prudenzano, F. [Electrical and Information Engineering Department (DEI), Polytechnic Institute of Bari, 4 Orabona Street, CAP 70125, Bari, (Italy); Dimiccoli, V.; Losito, O.; Prisco, R. [ITEL Telecomunicazioni, 39 Labriola Street, CAP 70037, Ruvo di Puglia, Bari, (Italy)
2015-07-01
A homemade computer code for designing a Side- Coupled Linear Accelerator (SCL) is written. It integrates a simplified model of SCL tanks with the Particle Swarm Optimization (PSO) algorithm. The computer code main aim is to obtain useful guidelines for the design of Linear Accelerator (LINAC) resonant cavities. The design procedure, assisted via the aforesaid approach seems very promising, allowing future improvements towards the optimization of actual accelerating geometries. (authors)
Yan, Bailu; Zhao, Zheng; Zhou, Yingcheng; Yuan, Wenyan; Li, Jian; Wu, Jun; Cheng, Daojian
2017-10-01
Swarm intelligence optimization algorithms are mainstream algorithms for solving complex optimization problems. Among these algorithms, the particle swarm optimization (PSO) algorithm has the advantages of fast computation speed and few parameters. However, PSO is prone to premature convergence. To solve this problem, we develop a new PSO algorithm (RPSOLF) by combining the characteristics of random learning mechanism and Levy flight. The RPSOLF algorithm increases the diversity of the population by learning from random particles and random walks in Levy flight. On the one hand, we carry out a large number of numerical experiments on benchmark test functions, and compare these results with the PSO algorithm with Levy flight (PSOLF) algorithm and other PSO variants in previous reports. The results show that the optimal solution can be found faster and more efficiently by the RPSOLF algorithm. On the other hand, the RPSOLF algorithm can also be applied to optimize the Lennard-Jones clusters, and the results indicate that the algorithm obtains the optimal structure (2-60 atoms) with an extraordinary high efficiency. In summary, RPSOLF algorithm proposed in our paper is proved to be an extremely effective tool for global optimization.
Data clustering algorithms and applications
Aggarwal, Charu C
2013-01-01
Research on the problem of clustering tends to be fragmented across the pattern recognition, database, data mining, and machine learning communities. Addressing this problem in a unified way, Data Clustering: Algorithms and Applications provides complete coverage of the entire area of clustering, from basic methods to more refined and complex data clustering approaches. It pays special attention to recent issues in graphs, social networks, and other domains.The book focuses on three primary aspects of data clustering: Methods, describing key techniques commonly used for clustering, such as fea
Yan, Liang; Zhang, Lu; Zhu, Bo; Zhang, Jingying; Jiao, Zongxia
2017-10-01
Permanent magnet spherical actuator (PMSA) is a multi-variable featured and inter-axis coupled nonlinear system, which unavoidably compromises its motion control implementation. Uncertainties such as external load and friction torque of ball bearing and manufacturing errors also influence motion performance significantly. Therefore, the objective of this paper is to propose a controller based on a single neural adaptive (SNA) algorithm and a neural network (NN) identifier optimized with a particle swarm optimization (PSO) algorithm to improve the motion stability of PMSA with three-dimensional magnet arrays. The dynamic model and computed torque model are formulated for the spherical actuator, and a dynamic decoupling control algorithm is developed. By utilizing the global-optimization property of the PSO algorithm, the NN identifier is trained to avoid locally optimal solution and achieve high-precision compensations to uncertainties. The employment of the SNA controller helps to reduce the effect of compensation errors and convert the system to a stable one, even if there is difference between the compensations and uncertainties due to external disturbances. A simulation model is established, and experiments are conducted on the research prototype to validate the proposed control algorithm. The amplitude of the parameter perturbation is set to 5%, 10%, and 15%, respectively. The strong robustness of the proposed hybrid algorithm is validated by the abundant simulation data. It shows that the proposed algorithm can effectively compensate the influence of uncertainties and eliminate the effect of inter-axis couplings of the spherical actuator.
Cluster Synchronization Algorithms
Xia, Weiguo; Cao, Ming
2010-01-01
This paper presents two approaches to achieving cluster synchronization in dynamical multi-agent systems. In contrast to the widely studied synchronization behavior, where all the coupled agents converge to the same value asymptotically, in the cluster synchronization problem studied in this paper,
A PSO-Optimized Reciprocal Velocity Obstacles Algorithm for Navigation of Multiple Mobile Robots
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Ziyad Allawi
2015-03-01
Full Text Available In this paper, a new optimization method for the Reciprocal Velocity Obstacles (RVO is proposed. It uses the well-known Particle Swarm Optimization (PSO for navigation control of multiple mobile robots with kinematic constraints. The RVO is used for collision avoidance between the robots, while PSO is used to choose the best path for the robot maneuver to avoid colliding with other robots and to get to its goal faster. This method was applied on 24 mobile robots facing each other. Simulation results have shown that this method outperforms the ordinary RVO when the path is heuristically chosen.
Du, Gang; Jiang, Zhibin; Diao, Xiaodi; Yao, Yang
2012-04-01
Although the clinical pathway (CP) predefines predictable standardized care process for a particular diagnosis or procedure, many variances may still unavoidably occur. Some key index parameters have strong relationship with variances handling measures of CP. In real world, these problems are highly nonlinear in nature so that it's hard to develop a comprehensive mathematic model. In this paper, a rule extraction approach based on combing hybrid genetic double multi-group cooperative particle swarm optimization algorithm (PSO) and discrete PSO algorithm (named HGDMCPSO/DPSO) is developed to discovery the previously unknown and potentially complicated nonlinear relationship between key parameters and variances handling measures of CP. Then these extracted rules can provide abnormal variances handling warning for medical professionals. Three numerical experiments on Iris of UCI data sets, Wisconsin breast cancer data sets and CP variances data sets of osteosarcoma preoperative chemotherapy are used to validate the proposed method. When compared with the previous researches, the proposed rule extraction algorithm can obtain the high prediction accuracy, less computing time, more stability and easily comprehended by users, thus it is an effective knowledge extraction tool for CP variances handling.
Cluster algorithms and computational complexity
Li, Xuenan
Cluster algorithms for the 2D Ising model with a staggered field have been studied and a new cluster algorithm for path sampling has been worked out. The complexity properties of Bak-Seppen model and the Growing network model have been studied by using the Computational Complexity Theory. The dynamic critical behavior of the two-replica cluster algorithm is studied. Several versions of the algorithm are applied to the two-dimensional, square lattice Ising model with a staggered field. The dynamic exponent for the full algorithm is found to be less than 0.5. It is found that odd translations of one replica with respect to the other together with global flips are essential for obtaining a small value of the dynamic exponent. The path sampling problem for the 1D Ising model is studied using both a local algorithm and a novel cluster algorithm. The local algorithm is extremely inefficient at low temperature, where the integrated autocorrelation time is found to be proportional to the fourth power of correlation length. The dynamic exponent of the cluster algorithm is found to be zero and therefore proved to be much more efficient than the local algorithm. The parallel computational complexity of the Bak-Sneppen evolution model is studied. It is shown that Bak-Sneppen histories can be generated by a massively parallel computer in a time that is polylog in the length of the history, which means that the logical depth of producing a Bak-Sneppen history is exponentially less than the length of the history. The parallel dynamics for generating Bak-Sneppen histories is contrasted to standard Bak-Sneppen dynamics. The parallel computational complexity of the Growing Network model is studied. The growth of the network with linear kernels is shown to be not complex and an algorithm with polylog parallel running time is found. The growth of the network with gamma ≥ 2 super-linear kernels can be realized by a randomized parallel algorithm with polylog expected running time.
Hannan, M A; Akhtar, Mahmuda; Begum, R A; Basri, H; Hussain, A; Scavino, Edgar
2018-01-01
Waste collection widely depends on the route optimization problem that involves a large amount of expenditure in terms of capital, labor, and variable operational costs. Thus, the more waste collection route is optimized, the more reduction in different costs and environmental effect will be. This study proposes a modified particle swarm optimization (PSO) algorithm in a capacitated vehicle-routing problem (CVRP) model to determine the best waste collection and route optimization solutions. In this study, threshold waste level (TWL) and scheduling concepts are applied in the PSO-based CVRP model under different datasets. The obtained results from different datasets show that the proposed algorithmic CVRP model provides the best waste collection and route optimization in terms of travel distance, total waste, waste collection efficiency, and tightness at 70-75% of TWL. The obtained results for 1 week scheduling show that 70% of TWL performs better than all node consideration in terms of collected waste, distance, tightness, efficiency, fuel consumption, and cost. The proposed optimized model can serve as a valuable tool for waste collection and route optimization toward reducing socioeconomic and environmental impacts. Copyright © 2017 Elsevier Ltd. All rights reserved.
Cognitive and social information based PSO
African Journals Online (AJOL)
In 1995 swarm intelligence based PSO (Particle Swarm Optimization) has been ... PSO has certain key merits compared to other evolutionary algorithms ...... S. K. 2007, Multi-objective particle swarm optimization with time variant inertia and.
Parallel algorithms and cluster computing
Hoffmann, Karl Heinz
2007-01-01
This book presents major advances in high performance computing as well as major advances due to high performance computing. It contains a collection of papers in which results achieved in the collaboration of scientists from computer science, mathematics, physics, and mechanical engineering are presented. From the science problems to the mathematical algorithms and on to the effective implementation of these algorithms on massively parallel and cluster computers we present state-of-the-art methods and technology as well as exemplary results in these fields. This book shows that problems which seem superficially distinct become intimately connected on a computational level.
Determination of atomic cluster structure with cluster fusion algorithm
DEFF Research Database (Denmark)
Obolensky, Oleg I.; Solov'yov, Ilia; Solov'yov, Andrey V.
2005-01-01
We report an efficient scheme of global optimization, called cluster fusion algorithm, which has proved its reliability and high efficiency in determination of the structure of various atomic clusters.......We report an efficient scheme of global optimization, called cluster fusion algorithm, which has proved its reliability and high efficiency in determination of the structure of various atomic clusters....
Contingency-Constrained Optimal Power Flow Using Simplex-Based Chaotic-PSO Algorithm
Directory of Open Access Journals (Sweden)
Zwe-Lee Gaing
2011-01-01
Full Text Available This paper proposes solving contingency-constrained optimal power flow (CC-OPF by a simplex-based chaotic particle swarm optimization (SCPSO. The associated objective of CC-OPF with the considered valve-point loading effects of generators is to minimize the total generation cost, to reduce transmission loss, and to improve the bus-voltage profile under normal or postcontingent states. The proposed SCPSO method, which involves the chaotic map and the downhill simplex search, can avoid the premature convergence of PSO and escape local minima. The effectiveness of the proposed method is demonstrated in two power systems with contingency constraints and compared with other stochastic techniques in terms of solution quality and convergence rate. The experimental results show that the SCPSO-based CC-OPF method has suitable mutation schemes, thus showing robustness and effectiveness in solving contingency-constrained OPF problems.
Gravitation field algorithm and its application in gene cluster.
Zheng, Ming; Liu, Gui-Xia; Zhou, Chun-Guang; Liang, Yan-Chun; Wang, Yan
2010-09-20
Searching optima is one of the most challenging tasks in clustering genes from available experimental data or given functions. SA, GA, PSO and other similar efficient global optimization methods are used by biotechnologists. All these algorithms are based on the imitation of natural phenomena. This paper proposes a novel searching optimization algorithm called Gravitation Field Algorithm (GFA) which is derived from the famous astronomy theory Solar Nebular Disk Model (SNDM) of planetary formation. GFA simulates the Gravitation field and outperforms GA and SA in some multimodal functions optimization problem. And GFA also can be used in the forms of unimodal functions. GFA clusters the dataset well from the Gene Expression Omnibus. The mathematical proof demonstrates that GFA could be convergent in the global optimum by probability 1 in three conditions for one independent variable mass functions. In addition to these results, the fundamental optimization concept in this paper is used to analyze how SA and GA affect the global search and the inherent defects in SA and GA. Some results and source code (in Matlab) are publicly available at http://ccst.jlu.edu.cn/CSBG/GFA.
Gravitation field algorithm and its application in gene cluster
Directory of Open Access Journals (Sweden)
Zheng Ming
2010-09-01
Full Text Available Abstract Background Searching optima is one of the most challenging tasks in clustering genes from available experimental data or given functions. SA, GA, PSO and other similar efficient global optimization methods are used by biotechnologists. All these algorithms are based on the imitation of natural phenomena. Results This paper proposes a novel searching optimization algorithm called Gravitation Field Algorithm (GFA which is derived from the famous astronomy theory Solar Nebular Disk Model (SNDM of planetary formation. GFA simulates the Gravitation field and outperforms GA and SA in some multimodal functions optimization problem. And GFA also can be used in the forms of unimodal functions. GFA clusters the dataset well from the Gene Expression Omnibus. Conclusions The mathematical proof demonstrates that GFA could be convergent in the global optimum by probability 1 in three conditions for one independent variable mass functions. In addition to these results, the fundamental optimization concept in this paper is used to analyze how SA and GA affect the global search and the inherent defects in SA and GA. Some results and source code (in Matlab are publicly available at http://ccst.jlu.edu.cn/CSBG/GFA.
Frequent Pattern Mining Algorithms for Data Clustering
DEFF Research Database (Denmark)
Zimek, Arthur; Assent, Ira; Vreeken, Jilles
2014-01-01
that frequent pattern mining was at the cradle of subspace clustering—yet, it quickly developed into an independent research field. In this chapter, we discuss how frequent pattern mining algorithms have been extended and generalized towards the discovery of local clusters in high-dimensional data......Discovering clusters in subspaces, or subspace clustering and related clustering paradigms, is a research field where we find many frequent pattern mining related influences. In fact, as the first algorithms for subspace clustering were based on frequent pattern mining algorithms, it is fair to say....... In particular, we discuss several example algorithms for subspace clustering or projected clustering as well as point out recent research questions and open topics in this area relevant to researchers in either clustering or pattern mining...
Directory of Open Access Journals (Sweden)
Simon Fong
2015-01-01
Full Text Available Human motion sensing technology gains tremendous popularity nowadays with practical applications such as video surveillance for security, hand signing, and smart-home and gaming. These applications capture human motions in real-time from video sensors, the data patterns are nonstationary and ever changing. While the hardware technology of such motion sensing devices as well as their data collection process become relatively mature, the computational challenge lies in the real-time analysis of these live feeds. In this paper we argue that traditional data mining methods run short of accurately analyzing the human activity patterns from the sensor data stream. The shortcoming is due to the algorithmic design which is not adaptive to the dynamic changes in the dynamic gesture motions. The successor of these algorithms which is known as data stream mining is evaluated versus traditional data mining, through a case of gesture recognition over motion data by using Microsoft Kinect sensors. Three different subjects were asked to read three comic strips and to tell the stories in front of the sensor. The data stream contains coordinates of articulation points and various positions of the parts of the human body corresponding to the actions that the user performs. In particular, a novel technique of feature selection using swarm search and accelerated PSO is proposed for enabling fast preprocessing for inducing an improved classification model in real-time. Superior result is shown in the experiment that runs on this empirical data stream. The contribution of this paper is on a comparative study between using traditional and data stream mining algorithms and incorporation of the novel improved feature selection technique with a scenario where different gesture patterns are to be recognized from streaming sensor data.
Directory of Open Access Journals (Sweden)
Yingjie Xu
2016-03-01
Full Text Available Carbon fiber-reinforced multi-layered pyrocarbon–silicon carbide matrix (C/C–SiC composites are widely used in aerospace structures. The complicated spatial architecture and material heterogeneity of C/C–SiC composites constitute the challenge for tailoring their properties. Thus, discovering the intrinsic relations between the properties and the microstructures and sequentially optimizing the microstructures to obtain composites with the best performances becomes the key for practical applications. The objective of this work is to optimize the thermal-elastic properties of unidirectional C/C–SiC composites by controlling the multi-layered matrix thicknesses. A hybrid approach based on micromechanical modeling and back propagation (BP neural network is proposed to predict the thermal-elastic properties of composites. Then, a particle swarm optimization (PSO algorithm is interfaced with this hybrid model to achieve the optimal design for minimizing the coefficient of thermal expansion (CTE of composites with the constraint of elastic modulus. Numerical examples demonstrate the effectiveness of the proposed hybrid model and optimization method.
Load forecast method of electric vehicle charging station using SVR based on GA-PSO
Lu, Kuan; Sun, Wenxue; Ma, Changhui; Yang, Shenquan; Zhu, Zijian; Zhao, Pengfei; Zhao, Xin; Xu, Nan
2017-06-01
This paper presents a Support Vector Regression (SVR) method for electric vehicle (EV) charging station load forecast based on genetic algorithm (GA) and particle swarm optimization (PSO). Fuzzy C-Means (FCM) clustering is used to establish similar day samples. GA is used for global parameter searching and PSO is used for a more accurately local searching. Load forecast is then regressed using SVR. The practical load data of an EV charging station were taken to illustrate the proposed method. The result indicates an obvious improvement in the forecasting accuracy compared with SVRs based on PSO and GA exclusively.
Energy Technology Data Exchange (ETDEWEB)
Yousefi, M.; Omid, M.; Rafiee, Sh. [Department of Agricultural Machinery Engineering, University of Tehran, Karaj (Iran, Islamic Republic of); Ghaderi, S.F. [Department of Industrial Engineering, University of Tehran, Tehran (Iran, Islamic Republic of)
2013-07-01
Iran's primary energy consumption (PEC) was modeled as a linear function of five socioeconomic and meteorological explanatory variables using particle swarm optimization (PSO) and artificial neural networks (ANNs) techniques. Results revealed that ANN outperforms PSO model to predict test data. However, PSO technique is simple and provided us with a closed form expression to forecast PEC. Energy demand was forecasted by PSO and ANN using represented scenario. Finally, adapting about 10% renewable energy revealed that based on the developed linear programming (LP) model under minimum CO2 emissions, Iran will emit about 2520 million metric tons CO2 in 2025. The LP model indicated that maximum possible development of hydropower, geothermal and wind energy resources will satisfy the aim of minimization of CO2 emissions. Therefore, the main strategic policy in order to reduce CO2 emissions would be exploitation of these resources.
Optimal Economic Operation of Islanded Microgrid by Using a Modified PSO Algorithm
Directory of Open Access Journals (Sweden)
Yiwei Ma
2015-01-01
Full Text Available An optimal economic operation method is presented to attain a joint-optimization of cost reduction and operation strategy for islanded microgrid, which includes renewable energy source, the diesel generator, and battery storage system. The optimization objective is to minimize the overall generating cost involving depreciation cost, operation cost, emission cost, and economic subsidy available for renewable energy source, while satisfying various equality and inequality constraints. A novel dynamic optimization process is proposed based on two different operation control modes where diesel generator or battery storage acts as the master unit to maintain the system frequency and voltage stability, and a modified particle swarm optimization algorithm is applied to get faster solution to the practical economic operation problem of islanded microgrid. With the example system of an actual islanded microgrid in Dongao Island, China, the proposed models, dynamic optimization strategy, and solution algorithm are verified and the influences of different operation strategies and optimization algorithms on the economic operation are discussed. The results achieved demonstrate the effectiveness and feasibility of the proposed method.
Astuty; Haryono, T.
2016-04-01
Transmission expansion planning (TEP) is one of the issue that have to be faced caused by addition of large scale power generation into the existing power system. Optimization need to be conducted to get optimal solution technically and economically. Several mathematic methods have been applied to provide optimal allocation of new transmission line such us genetic algorithm, particle swarm optimization and tabu search. This paper proposed novel binary particle swarm optimization (NBPSO) to determine which transmission line should be added to the existing power system. There are two scenerios in this simulation. First, considering transmission power losses and the second is regardless transmission power losses. NBPSO method successfully obtain optimal solution in short computation time. Compare to the first scenario, the number of new line in second scenario which regardless power losses is less but produces high power losses that cause the cost becoming extremely expensive.
Data clustering theory, algorithms, and applications
Gan, Guojun; Wu, Jianhong
2007-01-01
Cluster analysis is an unsupervised process that divides a set of objects into homogeneous groups. This book starts with basic information on cluster analysis, including the classification of data and the corresponding similarity measures, followed by the presentation of over 50 clustering algorithms in groups according to some specific baseline methodologies such as hierarchical, center-based, and search-based methods. As a result, readers and users can easily identify an appropriate algorithm for their applications and compare novel ideas with existing results. The book also provides examples of clustering applications to illustrate the advantages and shortcomings of different clustering architectures and algorithms. Application areas include pattern recognition, artificial intelligence, information technology, image processing, biology, psychology, and marketing. Readers also learn how to perform cluster analysis with the C/C++ and MATLAB® programming languages.
An Adaptive Density-Based Time Series Clustering Algorithm: A Case Study on Rainfall Patterns
Directory of Open Access Journals (Sweden)
Xiaomi Wang
2016-11-01
Full Text Available Current time series clustering algorithms fail to effectively mine clustering distribution characteristics of time series data without sufficient prior knowledge. Furthermore, these algorithms fail to simultaneously consider the spatial attributes, non-spatial time series attribute values, and non-spatial time series attribute trends. This paper proposes an adaptive density-based time series clustering (DTSC algorithm that simultaneously considers the three above-mentioned attributes to relieve these limitations. In this algorithm, the Delaunay triangulation is first utilized in combination with particle swarm optimization (PSO to adaptively obtain objects with similar spatial attributes. An improved density-based clustering strategy is then adopted to detect clusters with similar non-spatial time series attribute values and time series attribute trends. The effectiveness and efficiency of the DTSC algorithm are validated by experiments on simulated datasets and real applications. The results indicate that the proposed DTSC algorithm effectively detects time series clusters with arbitrary shapes and similar attributes and densities while considering noises.
Semantic Based Cluster Content Discovery in Description First Clustering Algorithm
Directory of Open Access Journals (Sweden)
MUHAMMAD WASEEM KHAN
2017-01-01
Full Text Available In the field of data analytics grouping of like documents in textual data is a serious problem. A lot of work has been done in this field and many algorithms have purposed. One of them is a category of algorithms which firstly group the documents on the basis of similarity and then assign the meaningful labels to those groups. Description first clustering algorithm belong to the category in which the meaningful description is deduced first and then relevant documents are assigned to that description. LINGO (Label Induction Grouping Algorithm is the algorithm of description first clustering category which is used for the automatic grouping of documents obtained from search results. It uses LSI (Latent Semantic Indexing; an IR (Information Retrieval technique for induction of meaningful labels for clusters and VSM (Vector Space Model for cluster content discovery. In this paper we present the LINGO while it is using LSI during cluster label induction and cluster content discovery phase. Finally, we compare results obtained from the said algorithm while it uses VSM and Latent semantic analysis during cluster content discovery phase.
A Generalized Affinity Propagation Clustering Algorithm for Nonspherical Cluster Discovery
Qiu, Teng; Li, Yongjie
2015-01-01
Clustering analysis aims to discover the underlying clusters in the data points according to their similarities. It has wide applications ranging from bioinformatics to astronomy. Here, we proposed a Generalized Affinity Propagation (G-AP) clustering algorithm. Data points are first organized in a sparsely connected in-tree (IT) structure by a physically inspired strategy. Then, additional edges are added to the IT structure for those reachable nodes. This expanded structure is subsequently t...
Non-convex polygons clustering algorithm
Directory of Open Access Journals (Sweden)
Kruglikov Alexey
2016-01-01
Full Text Available A clustering algorithm is proposed, to be used as a preliminary step in motion planning. It is tightly coupled to the applied problem statement, i.e. uses parameters meaningful only with respect to it. Use of geometrical properties for polygons clustering allows for a better calculation time as opposed to general-purpose algorithms. A special form of map optimized for quick motion planning is constructed as a result.
Energy Technology Data Exchange (ETDEWEB)
Niknam, Taher [Electronic and Electrical Engineering Department, Shiraz University of Technology, Shiraz (Iran)
2009-08-15
This paper introduces a robust searching hybrid evolutionary algorithm to solve the multi-objective Distribution Feeder Reconfiguration (DFR). The main objective of the DFR is to minimize the real power loss, deviation of the nodes' voltage, the number of switching operations, and balance the loads on the feeders. Because of the fact that the objectives are different and no commensurable, it is difficult to solve the problem by conventional approaches that may optimize a single objective. This paper presents a new approach based on norm3 for the DFR problem. In the proposed method, the objective functions are considered as a vector and the aim is to maximize the distance (norm2) between the objective function vector and the worst objective function vector while the constraints are met. Since the proposed DFR is a multi objective and non-differentiable optimization problem, a new hybrid evolutionary algorithm (EA) based on the combination of the Honey Bee Mating Optimization (HBMO) and the Discrete Particle Swarm Optimization (DPSO), called DPSO-HBMO, is implied to solve it. The results of the proposed reconfiguration method are compared with the solutions obtained by other approaches, the original DPSO and HBMO over different distribution test systems. (author)
PSO Method for Fitting Analytic Potential Energy Functions. Application to I-(H2O).
Bhandari, H N; Ma, X; Paul, A K; Smith, P; Hase, W L
2018-02-08
In this work a particle swarm optimization (PSO) algorithm was used to fit an analytic potential energy function to I - (H 2 O) intermolecular potential energy curves calculated with DFT/B97-1 theory. The analytic function is a sum of two-body terms, each written as a generalized sum of Buckingham and Lennard-Jones terms with only six parameters. Two models were used to describe the two-body terms between I - and H 2 O: a three-site model H 2 O and a four-site model including a ghost atom. The fits are compared with those obtained with a genetic/nonlinear least-squares algorithm. The ghost atom model significantly improves the fitting accuracy for both algorithms. The PSO fits are significantly more accurate and much less time-consuming than those obtained with the genetic/nonlinear least-squares algorithm. Eight I - ---H 2 O potential energy curves, fit with the PSO algorithm for the three- and four-site models, have RMSE of 1.37 and 0.22 kcal/mol and compute times of ∼20 and ∼68 min, respectively. The PSO fit for the four-site model is quite adequate for determining densities of states and partition functions for I - (H 2 O) n clusters at high energies and temperatures, respectively. The PSO algorithm was also applied to the eight potential energy curves, with the four-site model, for a short time ∼8 min fitting. The RMSE was small, only 0.37 kcal/mol, showing the high efficiency of the PSO algorithm with retention of a good fitting accuracy. The PSO algorithm is a good choice for fitting analytic potential energy functions, and for the work presented here was able to find an adequate fit to an I - (H 2 O) analytic intermolecular potential with a small number of parameters.
Parallel Clustering Algorithms for Structured AMR
Energy Technology Data Exchange (ETDEWEB)
Gunney, B T; Wissink, A M; Hysom, D A
2005-10-26
We compare several different parallel implementation approaches for the clustering operations performed during adaptive gridding operations in patch-based structured adaptive mesh refinement (SAMR) applications. Specifically, we target the clustering algorithm of Berger and Rigoutsos (BR91), which is commonly used in many SAMR applications. The baseline for comparison is a simplistic parallel extension of the original algorithm that works well for up to O(10{sup 2}) processors. Our goal is a clustering algorithm for machines of up to O(10{sup 5}) processors, such as the 64K-processor IBM BlueGene/Light system. We first present an algorithm that avoids the unneeded communications of the simplistic approach to improve the clustering speed by up to an order of magnitude. We then present a new task-parallel implementation to further reduce communication wait time, adding another order of magnitude of improvement. The new algorithms also exhibit more favorable scaling behavior for our test problems. Performance is evaluated on a number of large scale parallel computer systems, including a 16K-processor BlueGene/Light system.
Topic Evolutionary Tweet Stream Clustering Algorithm and TCV Rank Summarization
National Research Council Canada - National Science Library
K.Selvaraj; S.Balaji
2015-01-01
... and more. our proposed work consists three components tweet stream clustering to cluster tweet using k-means cluster algorithm and second tweet cluster vector technique to generate rank summarization using...
Fuzzy Rules for Ant Based Clustering Algorithm
Directory of Open Access Journals (Sweden)
Amira Hamdi
2016-01-01
Full Text Available This paper provides a new intelligent technique for semisupervised data clustering problem that combines the Ant System (AS algorithm with the fuzzy c-means (FCM clustering algorithm. Our proposed approach, called F-ASClass algorithm, is a distributed algorithm inspired by foraging behavior observed in ant colonyT. The ability of ants to find the shortest path forms the basis of our proposed approach. In the first step, several colonies of cooperating entities, called artificial ants, are used to find shortest paths in a complete graph that we called graph-data. The number of colonies used in F-ASClass is equal to the number of clusters in dataset. Hence, the partition matrix of dataset founded by artificial ants is given in the second step, to the fuzzy c-means technique in order to assign unclassified objects generated in the first step. The proposed approach is tested on artificial and real datasets, and its performance is compared with those of K-means, K-medoid, and FCM algorithms. Experimental section shows that F-ASClass performs better according to the error rate classification, accuracy, and separation index.
Spectral clustering algorithms for ultrasound image segmentation.
Archip, Neculai; Rohling, Robert; Cooperberg, Peter; Tahmasebpour, Hamid; Warfield, Simon K
2005-01-01
Image segmentation algorithms derived from spectral clustering analysis rely on the eigenvectors of the Laplacian of a weighted graph obtained from the image. The NCut criterion was previously used for image segmentation in supervised manner. We derive a new strategy for unsupervised image segmentation. This article describes an initial investigation to determine the suitability of such segmentation techniques for ultrasound images. The extension of the NCut technique to the unsupervised clustering is first described. The novel segmentation algorithm is then performed on simulated ultrasound images. Tests are also performed on abdominal and fetal images with the segmentation results compared to manual segmentation. Comparisons with the classical NCut algorithm are also presented. Finally, segmentation results on other types of medical images are shown.
Borni, A.; Abdelkrim, T.; Zaghba, L.; Bouchakour, A.; Lakhdari, A.; Zarour, L.
2017-02-01
In this paper the model of a grid connected hybrid system is presented. The hybrid system includes a variable speed wind turbine controlled by aFuzzy MPPT control, and a photovoltaic generator controlled with PSO Fuzzy MPPT control to compensate the power fluctuations caused by the wind in a short and long term, the inverter currents injected to the grid is controlled by a decoupled PI current control. In the first phase, we start by modeling of the conversion system components; the wind system is consisted of a turbine coupled to a gearless permanent magnet generator (PMG), the AC/DC and DC-DC (Boost) converter are responsible to feed the electric energy produced by the PMG to the DC-link. The solar system consists of a photovoltaic generator (GPV) connected to a DC/DC boost converter controlled by a PSO fuzzy MPPT control to extract at any moment the maximum available power at the GPV terminals, the system is based on maximum utilization of both of sources because of their complementary. At the end. The active power reached to the DC-link is injected to the grid through a DC/AC inverter, this function is achieved by controlling the DC bus voltage to keep it constant and close to its reference value, The simulation studies have been performed using Matlab/Simulink. It can be concluded that a good control system performance can be achieved.
Noise-enhanced clustering and competitive learning algorithms.
Osoba, Osonde; Kosko, Bart
2013-01-01
Noise can provably speed up convergence in many centroid-based clustering algorithms. This includes the popular k-means clustering algorithm. The clustering noise benefit follows from the general noise benefit for the expectation-maximization algorithm because many clustering algorithms are special cases of the expectation-maximization algorithm. Simulations show that noise also speeds up convergence in stochastic unsupervised competitive learning, supervised competitive learning, and differential competitive learning. Copyright © 2012 Elsevier Ltd. All rights reserved.
Application for Suggesting Restaurants Using Clustering Algorithms
Directory of Open Access Journals (Sweden)
Iulia Alexandra IANCU
2014-10-01
Full Text Available The aim of this article is to present an application whose purpose is to make suggestions of restaurants to users. The application uses as input the descriptions of restaurants, reviews, user reviews available on the specialized Internet sites and blogs. In the application there are used processing techniques of natural language implemented using parsers, clustering algorithms and techniques for data collection from the Internet through web crawlers.
ITS Cluster Finding Algorithm on GPU
Changaival, Boonyarit
2014-01-01
ITS cluster finding algorithm is one of the data reduction algorithms at ALICE. It needs to be processed fast due to a high amount of data readout from the detector. A variety of platforms were studied for the system design. My work is to design, implement and benchmark this algorithm on a GPU platform. GPU is one of many platform that promote parallel computing. A high-end GPU can contain over 2000 processing cores comparing to the commodity CPUs which have only four cores. The program is written in C and CUDA library. The throughput (Number of events per second) is used as a metric to measure the performance. With the latest implementation, the throughput was increased by a factor of 5.
A new hybrid imperialist competitive algorithm on data clustering
Indian Academy of Sciences (India)
Modiﬁed imperialist competitive algorithm; simulated annealing; -means; data clustering. ... In this paper, we purpose a novel algorithm that is based on combining two algorithms of clustering; -means and Modify Imperialist Competitive Algorithm. ... Marvdasht Branch, Islamic Azad University, Marvdasht, Iran, P.O. Box.
A High-Order CFS Algorithm for Clustering Big Data
Fanyu Bu; Zhikui Chen; Peng Li; Tong Tang; Ying Zhang
2016-01-01
With the development of Internet of Everything such as Internet of Things, Internet of People, and Industrial Internet, big data is being generated. Clustering is a widely used technique for big data analytics and mining. However, most of current algorithms are not effective to cluster heterogeneous data which is prevalent in big data. In this paper, we propose a high-order CFS algorithm (HOCFS) to cluster heterogeneous data by combining the CFS clustering algorithm and the dropout deep learn...
Improved Ant Colony Clustering Algorithm and Its Performance Study
Directory of Open Access Journals (Sweden)
Wei Gao
2016-01-01
Full Text Available Clustering analysis is used in many disciplines and applications; it is an important tool that descriptively identifies homogeneous groups of objects based on attribute values. The ant colony clustering algorithm is a swarm-intelligent method used for clustering problems that is inspired by the behavior of ant colonies that cluster their corpses and sort their larvae. A new abstraction ant colony clustering algorithm using a data combination mechanism is proposed to improve the computational efficiency and accuracy of the ant colony clustering algorithm. The abstraction ant colony clustering algorithm is used to cluster benchmark problems, and its performance is compared with the ant colony clustering algorithm and other methods used in existing literature. Based on similar computational difficulties and complexities, the results show that the abstraction ant colony clustering algorithm produces results that are not only more accurate but also more efficiently determined than the ant colony clustering algorithm and the other methods. Thus, the abstraction ant colony clustering algorithm can be used for efficient multivariate data clustering.
Improved Ant Colony Clustering Algorithm and Its Performance Study.
Gao, Wei
2016-01-01
Clustering analysis is used in many disciplines and applications; it is an important tool that descriptively identifies homogeneous groups of objects based on attribute values. The ant colony clustering algorithm is a swarm-intelligent method used for clustering problems that is inspired by the behavior of ant colonies that cluster their corpses and sort their larvae. A new abstraction ant colony clustering algorithm using a data combination mechanism is proposed to improve the computational efficiency and accuracy of the ant colony clustering algorithm. The abstraction ant colony clustering algorithm is used to cluster benchmark problems, and its performance is compared with the ant colony clustering algorithm and other methods used in existing literature. Based on similar computational difficulties and complexities, the results show that the abstraction ant colony clustering algorithm produces results that are not only more accurate but also more efficiently determined than the ant colony clustering algorithm and the other methods. Thus, the abstraction ant colony clustering algorithm can be used for efficient multivariate data clustering.
Strength Pareto particle swarm optimization and hybrid EA-PSO for multi-objective optimization.
Elhossini, Ahmed; Areibi, Shawki; Dony, Robert
2010-01-01
This paper proposes an efficient particle swarm optimization (PSO) technique that can handle multi-objective optimization problems. It is based on the strength Pareto approach originally used in evolutionary algorithms (EA). The proposed modified particle swarm algorithm is used to build three hybrid EA-PSO algorithms to solve different multi-objective optimization problems. This algorithm and its hybrid forms are tested using seven benchmarks from the literature and the results are compared to the strength Pareto evolutionary algorithm (SPEA2) and a competitive multi-objective PSO using several metrics. The proposed algorithm shows a slower convergence, compared to the other algorithms, but requires less CPU time. Combining PSO and evolutionary algorithms leads to superior hybrid algorithms that outperform SPEA2, the competitive multi-objective PSO (MO-PSO), and the proposed strength Pareto PSO based on different metrics.
The Georgi algorithms of jet clustering
Ge, Shao-Feng
2015-05-01
We reveal the direct link between the jet clustering algorithms recently proposed by Howard Georgi and parton shower kinematics, providing firm foundation from the theoretical side. The kinematics of this class of elegant algorithms is explored systematically for partons with arbitrary masses and the jet function is generalized to J {/β ( n)} with a jet function index n in order to achieve more degrees of freedom. Based on three basic requirements that, the result of jet clustering is process-independent and hence logically consistent, for softer subjets the inclusion cone is larger to conform with the fact that parton shower tends to emit softer partons at earlier stage with larger opening angle, and that the cone size cannot be too large in order to avoid mixing up neighbor jets, we derive constraints on the jet function parameter β and index n which are closely related to cone size cutoff. Finally, we discuss how jet function values can be made invariant under Lorentz boost.
A cluster refinement algorithm for motif discovery.
Li, Gang; Chan, Tak-Ming; Leung, Kwong-Sak; Lee, Kin-Hong
2010-01-01
Finding Transcription Factor Binding Sites, i.e., motif discovery, is crucial for understanding the gene regulatory relationship. Motifs are weakly conserved and motif discovery is an NP-hard problem. We propose a new approach called Cluster Refinement Algorithm for Motif Discovery (CRMD). CRMD employs a flexible statistical motif model allowing a variable number of motifs and motif instances. CRMD first uses a novel entropy-based clustering to find complete and good starting candidate motifs from the DNA sequences. CRMD then employs an effective greedy refinement to search for optimal motifs from the candidate motifs. The refinement is fast, and it changes the number of motif instances based on the adaptive thresholds. The performance of CRMD is further enhanced if the problem has one occurrence of motif instance per sequence. Using an appropriate similarity test of motifs, CRMD is also able to find multiple motifs. CRMD has been tested extensively on synthetic and real data sets. The experimental results verify that CRMD usually outperforms four other state-of-the-art algorithms in terms of the qualities of the solutions with competitive computing time. It finds a good balance between finding true motif instances and screening false motif instances, and is robust on problems of various levels of difficulty.
A generalized clustering algorithm for dynamic wireless sensor networks
Marin Perianu, Raluca; Hurink, Johann L.; Hartel, Pieter H.
We propose a general clustering algorithm for dynamic sensor networks, that makes localized decisions (1-hop neighbourhood) and produces disjoint clusters. The purpose is to extract and emphasise the essential clustering mechanisms common for a set of state-of-the-art algorithms, which allows for a
A Generalized Clustering Algorithm for Dynamic Wireless Sensor Networks
Marin Perianu, Raluca; Hurink, Johann L.; Hartel, Pieter H.
2008-01-01
We propose a general clustering algorithm for dynamic sensor networks, that makes localized decisions (1-hop neighbourhood) and produces disjoint clusters. The purpose is to extract and emphasise the essential clustering mechanisms common for a set of state-of-the-art algorithms, which allows for a
An Effective Hybrid of Bees Algorithm and Differential Evolution Algorithm in Data Clustering
Directory of Open Access Journals (Sweden)
Mohammad Babrdel Bonab
2015-01-01
Full Text Available Clustering is one of the most commonly used approaches in data mining and data analysis. One clustering technique in clustering that gains big attention in clustering related research is k-means clustering such that the observation is grouped into k cluster. However, some obstacles such as the adherence of results to the initial cluster centers or the risk of getting trapped into local optimality hinder the overall clustering performance. The purpose of this research is to minimize the dissimilarity of all points of a cluster from gravity center of the cluster with respect to capacity constraints in each cluster, such that each element is allocated to only one cluster. This paper proposes an effective combination algorithm to find optimal cluster center for the analysis of data in data mining and a new combination algorithm is proposed to untangle the clustering problem. This paper presents a new hybrid algorithm, which is, based on cluster center initialization algorithm (CCIA, bees algorithm (BA, and differential evolution (DE, known as CCIA-BADE-K, aiming at finding the best cluster center. The proposed algorithm performance is evaluated with standard data set. The evaluation results of the proposed algorithm and its comparison with other alternative algorithms in the literature confirm its superior performance and higher efficiency.
Energy Aware Clustering Algorithms for Wireless Sensor Networks
Rakhshan, Noushin; Rafsanjani, Marjan Kuchaki; Liu, Chenglian
2011-09-01
The sensor nodes deployed in wireless sensor networks (WSNs) are extremely power constrained, so maximizing the lifetime of the entire networks is mainly considered in the design. In wireless sensor networks, hierarchical network structures have the advantage of providing scalable and energy efficient solutions. In this paper, we investigate different clustering algorithms for WSNs and also compare these clustering algorithms based on metrics such as clustering distribution, cluster's load balancing, Cluster Head's (CH) selection strategy, CH's role rotation, node mobility, clusters overlapping, intra-cluster communications, reliability, security and location awareness.
Efficient incremental density-based algorithm for clustering large datasets
Directory of Open Access Journals (Sweden)
Ahmad M. Bakr
2015-12-01
Full Text Available In dynamic information environments such as the web, the amount of information is rapidly increasing. Thus, the need to organize such information in an efficient manner is more important than ever. With such dynamic nature, incremental clustering algorithms are always preferred compared to traditional static algorithms. In this paper, an enhanced version of the incremental DBSCAN algorithm is introduced for incrementally building and updating arbitrary shaped clusters in large datasets. The proposed algorithm enhances the incremental clustering process by limiting the search space to partitions rather than the whole dataset which results in significant improvements in the performance compared to relevant incremental clustering algorithms. Experimental results with datasets of different sizes and dimensions show that the proposed algorithm speeds up the incremental clustering process by factor up to 3.2 compared to existing incremental algorithms.
A new hybrid imperialist competitive algorithm on data clustering
Indian Academy of Sciences (India)
Modified imperialist competitive algorithm; simulated annealing; k-means; data clustering. 1. Introduction. Clustering is one of the unsupervised learning branches where a set of patterns, usually vectors in a multi-dimensional space, are grouped into clusters in such a way that patterns in the same cluster are similar in some ...
URL Mining Using Agglomerative Clustering Algorithm
Directory of Open Access Journals (Sweden)
Chinmay R. Deshmukh
2015-02-01
Full Text Available Abstract The tremendous growth of the web world incorporates application of data mining techniques to the web logs. Data Mining and World Wide Web encompasses an important and active area of research. Web log mining is analysis of web log files with web pages sequences. Web mining is broadly classified as web content mining web usage mining and web structure mining. Web usage mining is a technique to discover usage patterns from Web data in order to understand and better serve the needs of Web-based applications. URL mining refers to a subclass of Web mining that helps us to investigate the details of a Uniform Resource Locator. URL mining can be advantageous in the fields of security and protection. The paper introduces a technique for mining a collection of user transactions with an Internet search engine to discover clusters of similar queries and similar URLs. The information we exploit is a clickthrough data each record consist of a users query to a search engine along with the URL which the user selected from among the candidates offered by search engine. By viewing this dataset as a bipartite graph with the vertices on one side corresponding to queries and on the other side to URLs one can apply an agglomerative clustering algorithm to the graphs vertices to identify related queries and URLs.
PSO Advances and Application to Inverse Problems
Fernández-Martínez, Juan Luis; García-Gonzalo, Esperanza
Particle swarm optimization (PSO) is a Swarm Intelligence technique used for optimization motivated by the social behavior of individuals in large groups in nature. The damped mass-spring analogy known as the PSO continuous model allowed us to derive a whole family of particle swarm optimizers with different properties with regard to their exploitation/exploration balance. Using the theory of stochastic differential and difference equations, we fully characterize the stability behavior of these algorithms. PSO and RR-PSO are the most performant algorithms of this family in terms of rate of convergence. Other family members have better exploration capabilities. The so called four point algorithms use more information of previous iterations to update the particles positions and trajectories and seem to be more exploratory than most of the 3 points versions. Finally, based on the done analysis, we can affirm that the PSO optimizers are not heuristic algorithms since there exist mathematical results that can be used to explain their consistency/convergence.
Application of hybrid clustering using parallel k-means algorithm and DIANA algorithm
Umam, Khoirul; Bustamam, Alhadi; Lestari, Dian
2017-03-01
DNA is one of the carrier of genetic information of living organisms. Encoding, sequencing, and clustering DNA sequences has become the key jobs and routine in the world of molecular biology, in particular on bioinformatics application. There are two type of clustering, hierarchical clustering and partitioning clustering. In this paper, we combined two type clustering i.e. K-Means (partitioning clustering) and DIANA (hierarchical clustering), therefore it called Hybrid clustering. Application of hybrid clustering using Parallel K-Means algorithm and DIANA algorithm used to clustering DNA sequences of Human Papillomavirus (HPV). The clustering process is started with Collecting DNA sequences of HPV are obtained from NCBI (National Centre for Biotechnology Information), then performing characteristics extraction of DNA sequences. The characteristics extraction result is store in a matrix form, then normalize this matrix using Min-Max normalization and calculate genetic distance using Euclidian Distance. Furthermore, the hybrid clustering is applied by using implementation of Parallel K-Means algorithm and DIANA algorithm. The aim of using Hybrid Clustering is to obtain better clusters result. For validating the resulted clusters, to get optimum number of clusters, we use Davies-Bouldin Index (DBI). In this study, the result of implementation of Parallel K-Means clustering is data clustered become 5 clusters with minimal IDB value is 0.8741, and Hybrid Clustering clustered data become 13 sub-clusters with minimal IDB values = 0.8216, 0.6845, 0.3331, 0.1994 and 0.3952. The IDB value of hybrid clustering less than IBD value of Parallel K-Means clustering only that perform at 1ts stage. Its means clustering using Hybrid Clustering have the better result to clustered DNA sequence of HPV than perform parallel K-Means Clustering only.
Local Community Detection Algorithm Based on Minimal Cluster
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Yong Zhou
2016-01-01
Full Text Available In order to discover the structure of local community more effectively, this paper puts forward a new local community detection algorithm based on minimal cluster. Most of the local community detection algorithms begin from one node. The agglomeration ability of a single node must be less than multiple nodes, so the beginning of the community extension of the algorithm in this paper is no longer from the initial node only but from a node cluster containing this initial node and nodes in the cluster are relatively densely connected with each other. The algorithm mainly includes two phases. First it detects the minimal cluster and then finds the local community extended from the minimal cluster. Experimental results show that the quality of the local community detected by our algorithm is much better than other algorithms no matter in real networks or in simulated networks.
Cluster fusion algorithm: application to Lennard-Jones clusters
DEFF Research Database (Denmark)
Solov'yov, Ilia; Solov'yov, Andrey V.; Greiner, Walter
2006-01-01
We present a new general theoretical framework for modelling the cluster structure and apply it to description of the Lennard-Jones clusters. Starting from the initial tetrahedral cluster configuration, adding new atoms to the system and absorbing its energy at each step, we find cluster growing...... paths up to the cluster size of 150 atoms. We demonstrate that in this way all known global minima structures of the Lennard-Jones clusters can be found. Our method provides an efficient tool for the calculation and analysis of atomic cluster structure. With its use we justify the magic number sequence...... for the clusters of noble gas atoms and compare it with experimental observations. We report the striking correspondence of the peaks in the dependence of the second derivative of the binding energy per atom on cluster size calculated for the chain of the Lennard-Jones clusters based on the icosahedral symmetry...
Analyzing Job Aware Scheduling Algorithm in Hadoop for Heterogeneous Cluster
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Mayuri A Mehta
2015-12-01
Full Text Available A scheduling algorithm is required to efficiently manage cluster resources in a Hadoop cluster, thereby to increase resource utilization and to reduce response time. The job aware scheduling algorithm schedules non-local map tasks of jobs based on job execution time, earliest deadline first or workload of the job. In this paper, we present the performance evaluation of the job aware scheduling algorithm using MapReduce WordCount benchmark. The experimental results are compared with matchmaking scheduling algorithm. The results show that the job aware scheduling algorithm reduces average waiting time and memory wastage considerably as compared to matchmaking algorithm.
Alsharoa, Ahmad M.
2014-06-01
In this paper, the problem of power allocation for a multiple-input multiple-output two-way system is investigated in underlay Cognitive Radio (CR) set-up. In the CR underlay mode, secondary users are allowed to exploit the spectrum allocated to primary users in an opportunistic manner by respecting a tolerated temperature limit. The secondary networks employ an amplify-and-forward two-way relaying technique in order to maximize the sum rate under power budget and interference constraints. In this context, we formulate an optimization problem that is solved in two steps. First, we derive a closed-form expression of the optimal power allocated to terminals. Then, we employ a strong optimization tool based on particle swarm optimization algorithm to find the power allocated to secondary relays. Simulation results demonstrate the efficiency of the proposed solution and analyze the impact of some system parameters on the achieved performance. © 2014 IEEE.
Android Malware Classification Using K-Means Clustering Algorithm
Hamid, Isredza Rahmi A.; Syafiqah Khalid, Nur; Azma Abdullah, Nurul; Rahman, Nurul Hidayah Ab; Chai Wen, Chuah
2017-08-01
Malware was designed to gain access or damage a computer system without user notice. Besides, attacker exploits malware to commit crime or fraud. This paper proposed Android malware classification approach based on K-Means clustering algorithm. We evaluate the proposed model in terms of accuracy using machine learning algorithms. Two datasets were selected to demonstrate the practicing of K-Means clustering algorithms that are Virus Total and Malgenome dataset. We classify the Android malware into three clusters which are ransomware, scareware and goodware. Nine features were considered for each types of dataset such as Lock Detected, Text Detected, Text Score, Encryption Detected, Threat, Porn, Law, Copyright and Moneypak. We used IBM SPSS Statistic software for data classification and WEKA tools to evaluate the built cluster. The proposed K-Means clustering algorithm shows promising result with high accuracy when tested using Random Forest algorithm.
Decentralized controller gain scheduling using PSO for power ...
African Journals Online (AJOL)
For this reason, in this study the P and I control parameters are tuned based on Particle Swarm Optimization (PSO) algorithm for a better Load-Frequency Control in a Two-Area Two-Unit Thermal Reheat Power System (TATURIPS) with step load perturbation. To exemplify the optimum parameter search PSO is used as it is ...
Performance Evaluation of Incremental K-means Clustering Algorithm
Chakraborty, Sanjay; Nagwani, N. K.
2014-01-01
The incremental K-means clustering algorithm has already been proposed and analysed in paper [Chakraborty and Nagwani, 2011]. It is a very innovative approach which is applicable in periodically incremental environment and dealing with a bulk of updates. In this paper the performance evaluation is done for this incremental K-means clustering algorithm using air pollution database. This paper also describes the comparison on the performance evaluations between existing K-means clustering and i...
An event driven algorithm for fractal cluster formation
González, S.; Thornton, Anthony Richard; Luding, Stefan
2010-01-01
A new cluster based event-driven algorithm is developed to simulate the formation of clusters in a two dimensional gas: particles move freely until they collide and "stick" together irreversibly. These clusters aggregate into bigger structures in an isotompic way, forming fractal structures whose
Co-clustering models, algorithms and applications
Govaert, Gérard
2013-01-01
Cluster or co-cluster analyses are important tools in a variety of scientific areas. The introduction of this book presents a state of the art of already well-established, as well as more recent methods of co-clustering. The authors mainly deal with the two-mode partitioning under different approaches, but pay particular attention to a probabilistic approach. Chapter 1 concerns clustering in general and the model-based clustering in particular. The authors briefly review the classical clustering methods and focus on the mixture model. They present and discuss the use of different mixture
Clustering algorithms for Stokes space modulation format recognition
DEFF Research Database (Denmark)
Boada, Ricard; Borkowski, Robert; Tafur Monroy, Idelfonso
2015-01-01
Stokes space modulation format recognition (Stokes MFR) is a blind method enabling digital coherent receivers to infer modulation format information directly from a received polarization-division-multiplexed signal. A crucial part of the Stokes MFR is a clustering algorithm, which largely...... for discriminating between dual polarization: BPSK, QPSK, 8-PSK, 8-QAM, and 16-QAM. We determine essential performance metrics for each clustering algorithm and modulation format under test: minimum required signal-to-noise ratio, detection accuracy and algorithm complexity....
A Cluster-Based Orthogonal Multi-Objective Genetic Algorithm
Zhu, Jiankai; Dai, Guangming; Mo, Li
Multi-objective genetic algorithm is proved to be suitable for solving multi-objective optimization problems. However, it is usually very hard to balance the convergence and diversity of a multi-objective genetic algorithm. This paper introduces a new algorithm, with both good convergence and diversity based on clustering method and multi-parent crossover operator. Meanwhile, an initial population is generated by orthogonal design to enhance the search effort of the algorithm. The experimental results on a number of test problems indicate the good performance of the Cluster-Based Orthogonal Multi-Objective Genetic Algorithm.
Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra.
Rieder, Vera; Schork, Karin U; Kerschke, Laura; Blank-Landeshammer, Bernhard; Sickmann, Albert; Rahnenführer, Jörg
2017-11-03
In proteomics, liquid chromatography-tandem mass spectrometry (LC-MS/MS) is established for identifying peptides and proteins. Duplicated spectra, that is, multiple spectra of the same peptide, occur both in single MS/MS runs and in large spectral libraries. Clustering tandem mass spectra is used to find consensus spectra, with manifold applications. First, it speeds up database searches, as performed for instance by Mascot. Second, it helps to identify novel peptides across species. Third, it is used for quality control to detect wrongly annotated spectra. We compare different clustering algorithms based on the cosine distance between spectra. CAST, MS-Cluster, and PRIDE Cluster are popular algorithms to cluster tandem mass spectra. We add well-known algorithms for large data sets, hierarchical clustering, DBSCAN, and connected components of a graph, as well as the new method N-Cluster. All algorithms are evaluated on real data with varied parameter settings. Cluster results are compared with each other and with peptide annotations based on validation measures such as purity. Quality control, regarding the detection of wrongly (un)annotated spectra, is discussed for exemplary resulting clusters. N-Cluster proves to be highly competitive. All clustering results benefit from the so-called DISMS2 filter that integrates additional information, for example, on precursor mass.
Directory of Open Access Journals (Sweden)
Jiang Ting
2010-01-01
Full Text Available We optimize the cluster structure to solve problems such as the uneven energy consumption of the radar sensor nodes and random cluster head selection in the traditional clustering routing algorithm. According to the defined cost function for clusters, we present the clustering algorithm which is based on radio-free space path loss. In addition, we propose the energy and distance pheromones based on the residual energy and aggregation of the radar sensor nodes. According to bionic heuristic algorithm, a new ant colony-based clustering algorithm for radar sensor networks is also proposed. Simulation results show that this algorithm can get a better balance of the energy consumption and then remarkably prolong the lifetime of the radar sensor network.
Modification of MSDR algorithm and ITS implementation on graph clustering
Prastiwi, D.; Sugeng, K. A.; Siswantining, T.
2017-07-01
Maximum Standard Deviation Reduction (MSDR) is a graph clustering algorithm to minimize the distance variation within a cluster. In this paper we propose a modified MSDR by replacing one technical step in MSDR which uses polynomial regression, with a new and simpler step. This leads to our new algorithm called Modified MSDR (MMSDR). We implement the new algorithm to separate a domestic flight network of an Indonesian airline into two large clusters. Further analysis allows us to discover a weak link in the network, which should be improved by adding more flights.
Application of Multimodal PSO to Energy Supply Systems
Kitamura, Shoichi; Mori, Kazuyuki; Ozaki, Yoshihiko; Izui, Yoshio
In many engineering applications, it is necessary to find more than one solution to an optimization problem with complex multi dimensional objective function. For example, energy supply systems require the most attractive solution in cost but also a solution near to the actual regime among multiple solutions. Metaheuristics is paid to attention as a method for solving such a problem. The parallel searching Niche PSO (Particle Swarm Optimization) algorithm can find multiple solutions in multi dimensional problems in an acceptable time limit. In this paper, we propose the repetitive searching Multi PSO algorithm which is based on PSO and detects more precise solutions in the same time. Furthermore, we show the results of applying Multi PSO and Niche PSO to energy supply systems, and evaluate the validities of these methods.
Directory of Open Access Journals (Sweden)
Pawan R. Bhaladhare
2014-01-01
Full Text Available In privacy preserving data mining, the l-diversity and k-anonymity models are the most widely used for preserving the sensitive private information of an individual. Out of these two, l-diversity model gives better privacy and lesser information loss as compared to the k-anonymity model. In addition, we observe that numerous clustering algorithms have been proposed in data mining, namely, k-means, PSO, ACO, and BFO. Amongst them, the BFO algorithm is more stable and faster as compared to all others except k-means. However, BFO algorithm suffers from poor convergence behavior as compared to other optimization algorithms. We also observed that the current literature lacks any approaches that apply BFO with l-diversity model to realize privacy preservation in data mining. Motivated by this observation, we propose here an approach that uses fractional calculus (FC in the chemotaxis step of the BFO algorithm. The FC is used to boost the computational performance of the algorithm. We also evaluate our proposed FC-BFO and BFO algorithms empirically, focusing on information loss and execution time as vital metrics. The experimental evaluation shows that our proposed FC-BFO algorithm derives an optimal cluster as compared to the original BFO algorithm and existing clustering algorithms.
A functional clustering algorithm for the analysis of neural relationships
Feldt, S; Hetrick, V L; Berke, J D; Zochowski, M
2008-01-01
We formulate a novel technique for the detection of functional clusters in neural data. In contrast to prior network clustering algorithms, our procedure progressively combines spike trains and derives the optimal clustering cutoff in a simple and intuitive manner. To demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulated data and real neural data obtained from the mouse hippocampus during exploration and slow-wave sleep. We observe state-dependent clustering patterns consistent with known neurophysiological processes involved in memory consolidation.
Using k-means++ algorithm for researchers clustering
Rukmi, Alvida Mustika; Iqbal, Ikhwan Muhammad
2017-08-01
The Clustering of researchers based on publications is one of identifying community of researchers in a research environment. The researchers will know the relationships with other researchers regarding the similarity of topics and disciplines of publications based on the research community. The clustering will perform the extraction and analysis of the concept, topic detection and clustering of researchers. The attributes of data that can be obtained through the publications and characteristics of researchers on social networks that have been formed on the relations among researchers. The extraction and analysis of document, has two stages: extraction of keywords using keyphrase automatic rapid extraction (RAKE), and extraction concept of using latent semantic analysis (LSA). Clustering concept use k-means ++ algorithm. The last process, clustering of researchers is formed by feature extraction of social networking analysis,also use the k-means ++ algorithm. Applications for clustering researchers will be presented in the table containing information on researchers in each of these clusters.
Pixel Intensity Clustering Algorithm for Multilevel Image Segmentation
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Oludayo O. Olugbara
2015-01-01
Full Text Available Image segmentation is an important problem that has received significant attention in the literature. Over the last few decades, a lot of algorithms were developed to solve image segmentation problem; prominent amongst these are the thresholding algorithms. However, the computational time complexity of thresholding exponentially increases with increasing number of desired thresholds. A wealth of alternative algorithms, notably those based on particle swarm optimization and evolutionary metaheuristics, were proposed to tackle the intrinsic challenges of thresholding. In codicil, clustering based algorithms were developed as multidimensional extensions of thresholding. While these algorithms have demonstrated successful results for fewer thresholds, their computational costs for a large number of thresholds are still a limiting factor. We propose a new clustering algorithm based on linear partitioning of the pixel intensity set and between-cluster variance criterion function for multilevel image segmentation. The results of testing the proposed algorithm on real images from Berkeley Segmentation Dataset and Benchmark show that the algorithm is comparable with state-of-the-art multilevel segmentation algorithms and consistently produces high quality results. The attractive properties of the algorithm are its simplicity, generalization to a large number of clusters, and computational cost effectiveness.
Cognitive and social information based PSO
African Journals Online (AJOL)
reformed and modified concept of PSO with the thought that every swarm updates its position based upon cognitive and social environment knowledge only and the key aspect used here is that these parameters are no longer assumed to be accelerating components rather position components. This algorithm is termed by ...
APPROXIMATION ALGORITHMS FOR CLUSTERING TO MINIMIZE THE SUM OF DIAMETERS
Energy Technology Data Exchange (ETDEWEB)
Kopp, S.; Mortveit, H.S.; Reidys, S.M.
2000-02-01
We consider the problem of partitioning the nodes of a complete edge weighted graph into {kappa} clusters so as to minimize the sum of the diameters of the clusters. Since the problem is NP-complete, our focus is on the development of good approximation algorithms. When edge weights satisfy the triangle inequality, we present the first approximation algorithm for the problem. The approximation algorithm yields a solution that has no more than 10k clusters such the total diameter of these clusters is within a factor O(log (n/{kappa})) of the optimal value fork clusters, where n is the number of nodes in the complete graph. For any fixed {kappa}, we present an approximation algorithm that produces {kappa} clusters whose total diameter is at most twice the optimal value. When the distances are not required to satisfy the triangle inequality, we show that, unless P = NP, for any {rho} {ge} 1, there is no polynomial time approximation algorithm that can provide a performance guarantee of {rho} even when the number of clusters is fixed at 3. Other results obtained include a polynomial time algorithm for the problem when the underlying graph is a tree with edge weights.
A High-Order CFS Algorithm for Clustering Big Data
Directory of Open Access Journals (Sweden)
Fanyu Bu
2016-01-01
Full Text Available With the development of Internet of Everything such as Internet of Things, Internet of People, and Industrial Internet, big data is being generated. Clustering is a widely used technique for big data analytics and mining. However, most of current algorithms are not effective to cluster heterogeneous data which is prevalent in big data. In this paper, we propose a high-order CFS algorithm (HOCFS to cluster heterogeneous data by combining the CFS clustering algorithm and the dropout deep learning model, whose functionality rests on three pillars: (i an adaptive dropout deep learning model to learn features from each type of data, (ii a feature tensor model to capture the correlations of heterogeneous data, and (iii a tensor distance-based high-order CFS algorithm to cluster heterogeneous data. Furthermore, we verify our proposed algorithm on different datasets, by comparison with other two clustering schemes, that is, HOPCM and CFS. Results confirm the effectiveness of the proposed algorithm in clustering heterogeneous data.
A fuzzy clustering algorithm to detect planar and quadric shapes
Krishnapuram, Raghu; Frigui, Hichem; Nasraoui, Olfa
1992-01-01
In this paper, we introduce a new fuzzy clustering algorithm to detect an unknown number of planar and quadric shapes in noisy data. The proposed algorithm is computationally and implementationally simple, and it overcomes many of the drawbacks of the existing algorithms that have been proposed for similar tasks. Since the clustering is performed in the original image space, and since no features need to be computed, this approach is particularly suited for sparse data. The algorithm may also be used in pattern recognition applications.
The Ordered Clustered Travelling Salesman Problem: A Hybrid Genetic Algorithm
Ahmed, Zakir Hussain
2014-01-01
The ordered clustered travelling salesman problem is a variation of the usual travelling salesman problem in which a set of vertices (except the starting vertex) of the network is divided into some prespecified clusters. The objective is to find the least cost Hamiltonian tour in which vertices of any cluster are visited contiguously and the clusters are visited in the prespecified order. The problem is NP-hard, and it arises in practical transportation and sequencing problems. This paper develops a hybrid genetic algorithm using sequential constructive crossover, 2-opt search, and a local search for obtaining heuristic solution to the problem. The efficiency of the algorithm has been examined against two existing algorithms for some asymmetric and symmetric TSPLIB instances of various sizes. The computational results show that the proposed algorithm is very effective in terms of solution quality and computational time. Finally, we present solution to some more symmetric TSPLIB instances. PMID:24701148
Auto-Clustering using Particle Swarm Optimization and Bacterial Foraging
DEFF Research Database (Denmark)
Rutkowski Olesen, Jakob; Cordero, Jorge; Zeng, Yifeng
2009-01-01
This paper presents a hybrid approach for clustering based on particle swarm optimization (PSO) and bacteria foraging algorithms (BFA). The new method AutoCPB (Auto-Clustering based on particle bacterial foraging) makes use of autonomous agents whose primary objective is to cluster chunks of data...
Pattern-Based FPGA Logic Block and Clustering Algorithm
Tang, Xifan; Gaillardon, Pierre-Emmanuel; De Micheli, Giovanni
2014-01-01
In classical FPGA, LUTs and DFFs are pre-packed into BLEs and then BLEs are grouped into logic blocks. We propose a novel logic block architecture with fast combinational paths between LUTs, called pattern-based logic blocks. A new clustering algorithm is developed to release the potential of pattern-based logic blocks. Experimental results show that the novel architecture and the associated clustering algorithm lead to a 14% performance gain and a 8% wirelength reduction with a 3% area overh...
Exact Algorithms for the Clustered Vehicle Routing Problem
Battarra, M.; Erdogan, G.; Vigo, D.
2014-01-01
This study presents new exact algorithms for the clustered vehicle routing problem (CluVRP). The CluVRP is a generalization of the capacitated vehicle routing problem (CVRP), in which the customers are grouped into clusters. As in the CVRP, all the customers must be visited exactly once, but a
Khehra, Baljit Singh; Pharwaha, Amar Partap Singh
2017-04-01
Ductal carcinoma in situ (DCIS) is one type of breast cancer. Clusters of microcalcifications (MCCs) are symptoms of DCIS that are recognized by mammography. Selection of robust features vector is the process of selecting an optimal subset of features from a large number of available features in a given problem domain after the feature extraction and before any classification scheme. Feature selection reduces the feature space that improves the performance of classifier and decreases the computational burden imposed by using many features on classifier. Selection of an optimal subset of features from a large number of available features in a given problem domain is a difficult search problem. For n features, the total numbers of possible subsets of features are 2n. Thus, selection of an optimal subset of features problem belongs to the category of NP-hard problems. In this paper, an attempt is made to find the optimal subset of MCCs features from all possible subsets of features using genetic algorithm (GA), particle swarm optimization (PSO) and biogeography-based optimization (BBO). For simulation, a total of 380 benign and malignant MCCs samples have been selected from mammogram images of DDSM database. A total of 50 features extracted from benign and malignant MCCs samples are used in this study. In these algorithms, fitness function is correct classification rate of classifier. Support vector machine is used as a classifier. From experimental results, it is also observed that the performance of PSO-based and BBO-based algorithms to select an optimal subset of features for classifying MCCs as benign or malignant is better as compared to GA-based algorithm.
A clustering algorithm for determining community structure in complex networks
Jin, Hong; Yu, Wei; Li, ShiJun
2018-02-01
Clustering algorithms are attractive for the task of community detection in complex networks. DENCLUE is a representative density based clustering algorithm which has a firm mathematical basis and good clustering properties allowing for arbitrarily shaped clusters in high dimensional datasets. However, this method cannot be directly applied to community discovering due to its inability to deal with network data. Moreover, it requires a careful selection of the density parameter and the noise threshold. To solve these issues, a new community detection method is proposed in this paper. First, we use a spectral analysis technique to map the network data into a low dimensional Euclidean Space which can preserve node structural characteristics. Then, DENCLUE is applied to detect the communities in the network. A mathematical method named Sheather-Jones plug-in is chosen to select the density parameter which can describe the intrinsic clustering structure accurately. Moreover, every node on the network is meaningful so there were no noise nodes as a result the noise threshold can be ignored. We test our algorithm on both benchmark and real-life networks, and the results demonstrate the effectiveness of our algorithm over other popularity density based clustering algorithms adopted to community detection.
Diluvian Clustering: A Fast, Effective Algorithm for Clustering Compositional and Other Data.
Ritchie, Nicholas W M
2015-10-01
Diluvian Clustering is an unsupervised grid-based clustering algorithm well suited to interpreting large sets of noisy compositional data. The algorithm is notable for its ability to identify clusters that are either compact or diffuse and clusters that have either a large number or a small number of members. Diluvian Clustering is fundamentally different from most algorithms previously applied to cluster compositional data in that its implementation does not depend upon a metric. The algorithm reduces in two-dimensions to a case for which there is an intuitive, real-world parallel. Furthermore, the algorithm has few tunable parameters and these parameters have intuitive interpretations. By eliminating the dependence on an explicit metric, it is possible to derive reasonable clusters with disparate variances like those in real-world compositional data sets. The algorithm is computationally efficient. While the worst case scales as O(N²) most cases are closer to O(N) where N is the number of discrete data points. On a mid-range 2014 vintage computer, a typical 20,000 particle, 30 element data set can be clustered in a fraction of a second.
SURVEY ON CLUSTERING ALGORITHM AND SIMILARITY MEASURE FOR CATEGORICAL DATA
Directory of Open Access Journals (Sweden)
S. Anitha Elavarasi
2014-01-01
Full Text Available Learning is the process of generating useful information from a huge volume of data. Learning can be either supervised learning (e.g. classification or unsupervised learning (e.g. Clustering Clustering is the process of grouping a set of physical objects into classes of similar object. Objects in real world consist of both numerical and categorical data. Categorical data are not analyzed as numerical data because of the absence of inherit ordering. This paper describes about ten different clustering algorithms, its methodology and the factors influencing its performance. Each algorithm is evaluated using real world datasets and its pro and cons are specified. The various similarity / dissimilarity measure applied to categorical data and its performance is also discussed. The time complexity defines the amount of time taken by an algorithm to perform the elementary operation. The time complexity of various algorithms are discussed and its performance on real world data such as mushroom, zoo, soya bean, cancer, vote, car and iris are measured. In this survey Cluster Accuracy and Error rate for four different clustering algorithm (K-modes, fuzzy K-modes, ROCK and Squeezer, two different similarity measure (DISC and Overlap and DILCA applied for hierarchy and partition algorithm are evaluated.
Research on retailer data clustering algorithm based on Spark
Huang, Qiuman; Zhou, Feng
2017-03-01
Big data analysis is a hot topic in the IT field now. Spark is a high-reliability and high-performance distributed parallel computing framework for big data sets. K-means algorithm is one of the classical partition methods in clustering algorithm. In this paper, we study the k-means clustering algorithm on Spark. Firstly, the principle of the algorithm is analyzed, and then the clustering analysis is carried out on the supermarket customers through the experiment to find out the different shopping patterns. At the same time, this paper proposes the parallelization of k-means algorithm and the distributed computing framework of Spark, and gives the concrete design scheme and implementation scheme. This paper uses the two-year sales data of a supermarket to validate the proposed clustering algorithm and achieve the goal of subdividing customers, and then analyze the clustering results to help enterprises to take different marketing strategies for different customer groups to improve sales performance.
K-Distributions: A New Algorithm for Clustering Categorical Data
Cai, Zhihua; Wang, Dianhong; Jiang, Liangxiao
Clustering is one of the most important tasks in data mining. The K-means algorithm is the most popular one for achieving this task because of its efficiency. However, it works only on numeric values although data sets in data mining often contain categorical values. Responding to this fact, the K-modes algorithm is presented to extend the K-means algorithm to categorical domains. Unfortunately, it suffers from computing the dissimilarity between each pair of objects and the mode of each cluster. Aiming at addressing these problems confronting K-modes, we present a new algorithm called K-distributions in this paper. We experimentally tested K-distributions using the well known 36 UCI data sets selected by Weka, and compared it to K-modes. The experimental results show that K-distributions significantly outperforms K-modes in term of clustering accuracy and log likelihood.
Big Data Clustering Using Genetic Algorithm On Hadoop Mapreduce
Directory of Open Access Journals (Sweden)
Nivranshu Hans
2015-04-01
Full Text Available Abstract Cluster analysis is used to classify similar objects under same group. It is one of the most important data mining methods. However it fails to perform well for big data due to huge time complexity. For such scenarios parallelization is a better approach. Mapreduce is a popular programming model which enables parallel processing in a distributed environment. But most of the clustering algorithms are not naturally parallelizable for instance Genetic Algorithms. This is so due to the sequential nature of Genetic Algorithms. This paper introduces a technique to parallelize GA based clustering by extending hadoop mapreduce. An analysis of proposed approach to evaluate performance gains with respect to a sequential algorithm is presented. The analysis is based on a real life large data set.
GDCluster: A General Decentralized Clustering Algorithm
Mashayekhi, Hoda; Habibi, Jafar; Khalafbeigi, Tania; Voulgaris, Spyros; van Steen, Martinus Richardus
In many popular applications like peer-to-peer systems, large amounts of data are distributed among multiple sources. Analysis of this data and identifying clusters is challenging due to processing, storage, and transmission costs. In this paper, we propose GDCluster, a general fully decentralized
A Scalable Algorithm for Clustering Sequential Data
2001-08-16
can be computed e cient using a variety of sequential pattern discovery algorithms AS SA Zak JKK HPMA Projecting in to the Feature...matrices from protein blocks Proc Natl Academy Science HPMA J Han J Pei B MortazaviAsl Q Chen U Dayal and M
Moving Clusters within a Memetic Algorithm for Graph Partitioning
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Inwook Hwang
2015-01-01
Full Text Available Most memetic algorithms (MAs for graph partitioning reduce the cut size of partitions using iterative improvement. But this local process considers one vertex at a time and fails to move clusters between subsets when the movement of any single vertex increases cut size, even though moving the whole cluster would reduce it. A new heuristic identifies clusters from the population of locally optimized random partitions that must anyway be created to seed the MA, and as the MA runs it makes beneficial cluster moves. Results on standard benchmark graphs show significant reductions in cut size, in some cases improving on the best result in the literature.
World Wide Web Metasearch Clustering Algorithm
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Adina LIPAI
2008-01-01
Full Text Available As the storage capacity and the processing speed of search engine is growing to keep up with the constant expansion of the World Wide Web, the user is facing an increasing list of results for a given query. A simple query composed of common words sometimes have hundreds even thousands of results making it practically impossible for the user to verify all of them, in order to identify a particular site. Even when the list of results is presented to the user ordered by a rank, most of the time it is not sufficient support to help him identify the most relevant sites for his query. The concept of search result clustering was introduced as a solution to this situation. The process of clustering search results consists of building up thematically homogenous groups from the initial list results provided by classic search tools, and using up characteristics present within the initial results, without any kind of predefined categories.
Robustness of the ATLAS pixel clustering neural network algorithm
AUTHOR|(INSPIRE)INSPIRE-00407780; The ATLAS collaboration
2016-01-01
Proton-proton collisions at the energy frontier puts strong constraints on track reconstruction algorithms. In the ATLAS track reconstruction algorithm, an artificial neural network is utilised to identify and split clusters of neighbouring read-out elements in the ATLAS pixel detector created by multiple charged particles. The robustness of the neural network algorithm is presented, probing its sensitivity to uncertainties in the detector conditions. The robustness is studied by evaluating the stability of the algorithm's performance under a range of variations in the inputs to the neural networks. Within reasonable variation magnitudes, the neural networks prove to be robust to most variation types.
A Genetic Algorithm That Exchanges Neighboring Centers for Fuzzy c-Means Clustering
Chahine, Firas Safwan
2012-01-01
Clustering algorithms are widely used in pattern recognition and data mining applications. Due to their computational efficiency, partitional clustering algorithms are better suited for applications with large datasets than hierarchical clustering algorithms. K-means is among the most popular partitional clustering algorithm, but has a major…
AN IMPROVED FUZZY CLUSTERING ALGORITHM FOR MICROARRAY IMAGE SPOTS SEGMENTATION
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V.G. Biju
2015-11-01
Full Text Available An automatic cDNA microarray image processing using an improved fuzzy clustering algorithm is presented in this paper. The spot segmentation algorithm proposed uses the gridding technique developed by the authors earlier, for finding the co-ordinates of each spot in an image. Automatic cropping of spots from microarray image is done using these co-ordinates. The present paper proposes an improved fuzzy clustering algorithm Possibility fuzzy local information c means (PFLICM to segment the spot foreground (FG from background (BG. The PFLICM improves fuzzy local information c means (FLICM algorithm by incorporating typicality of a pixel along with gray level information and local spatial information. The performance of the algorithm is validated using a set of simulated cDNA microarray images added with different levels of AWGN noise. The strength of the algorithm is tested by computing the parameters such as the Segmentation matching factor (SMF, Probability of error (pe, Discrepancy distance (D and Normal mean square error (NMSE. SMF value obtained for PFLICM algorithm shows an improvement of 0.9 % and 0.7 % for high noise and low noise microarray images respectively compared to FLICM algorithm. The PFLICM algorithm is also applied on real microarray images and gene expression values are computed.
Personalized PageRank Clustering: A graph clustering algorithm based on random walks
A. Tabrizi, Shayan; Shakery, Azadeh; Asadpour, Masoud; Abbasi, Maziar; Tavallaie, Mohammad Ali
2013-11-01
Graph clustering has been an essential part in many methods and thus its accuracy has a significant effect on many applications. In addition, exponential growth of real-world graphs such as social networks, biological networks and electrical circuits demands clustering algorithms with nearly-linear time and space complexity. In this paper we propose Personalized PageRank Clustering (PPC) that employs the inherent cluster exploratory property of random walks to reveal the clusters of a given graph. We combine random walks and modularity to precisely and efficiently reveal the clusters of a graph. PPC is a top-down algorithm so it can reveal inherent clusters of a graph more accurately than other nearly-linear approaches that are mainly bottom-up. It also gives a hierarchy of clusters that is useful in many applications. PPC has a linear time and space complexity and has been superior to most of the available clustering algorithms on many datasets. Furthermore, its top-down approach makes it a flexible solution for clustering problems with different requirements.
Functional clustering algorithm for the analysis of dynamic network data
Feldt, S.; Waddell, J.; Hetrick, V. L.; Berke, J. D.; Żochowski, M.
2009-05-01
We formulate a technique for the detection of functional clusters in discrete event data. The advantage of this algorithm is that no prior knowledge of the number of functional groups is needed, as our procedure progressively combines data traces and derives the optimal clustering cutoff in a simple and intuitive manner through the use of surrogate data sets. In order to demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulated neural spike train data and real neural data obtained from the mouse hippocampus during exploration and slow-wave sleep. Using the simulated data, we show that our algorithm performs better than existing methods. In the experimental data, we observe state-dependent clustering patterns consistent with known neurophysiological processes involved in memory consolidation.
A Selection Process for Genetic Algorithm Using Clustering Analysis
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Adam Chehouri
2017-11-01
Full Text Available This article presents a newly proposed selection process for genetic algorithms on a class of unconstrained optimization problems. The k-means genetic algorithm selection process (KGA is composed of four essential stages: clustering, membership phase, fitness scaling and selection. Inspired from the hypothesis that clustering the population helps to preserve a selection pressure throughout the evolution of the population, a membership probability index is assigned to each individual following the clustering phase. Fitness scaling converts the membership scores in a range suitable for the selection function which selects the parents of the next generation. Two versions of the KGA process are presented: using a fixed number of clusters K (KGAf and via an optimal partitioning Kopt (KGAo determined by two different internal validity indices. The performance of each method is tested on seven benchmark problems.
NCUBE - A clustering algorithm based on a discretized data space
Eigen, D. J.; Northouse, R. A.
1974-01-01
Cluster analysis involves the unsupervised grouping of data. The process provides an automatic procedure for generating known training samples for pattern classification. NCUBE, the clustering algorithm presented, is based upon the concept of imposing a gridwork on the data space. The NCUBE computer implementation of this concept provides an easily derived form of piecewise linear discrimination. This piecewise linear discrimination permits the separation of some types of data groups that are not linearly separable.
Core Business Selection Based on Ant Colony Clustering Algorithm
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Yu Lan
2014-01-01
Full Text Available Core business is the most important business to the enterprise in diversified business. In this paper, we first introduce the definition and characteristics of the core business and then descript the ant colony clustering algorithm. In order to test the effectiveness of the proposed method, Tianjin Port Logistics Development Co., Ltd. is selected as the research object. Based on the current situation of the development of the company, the core business of the company can be acquired by ant colony clustering algorithm. Thus, the results indicate that the proposed method is an effective way to determine the core business for company.
Identifying multiple influential spreaders by a heuristic clustering algorithm
Energy Technology Data Exchange (ETDEWEB)
Bao, Zhong-Kui [School of Mathematical Science, Anhui University, Hefei 230601 (China); Liu, Jian-Guo [Data Science and Cloud Service Research Center, Shanghai University of Finance and Economics, Shanghai, 200133 (China); Zhang, Hai-Feng, E-mail: haifengzhang1978@gmail.com [School of Mathematical Science, Anhui University, Hefei 230601 (China); Department of Communication Engineering, North University of China, Taiyuan, Shan' xi 030051 (China)
2017-03-18
The problem of influence maximization in social networks has attracted much attention. However, traditional centrality indices are suitable for the case where a single spreader is chosen as the spreading source. Many times, spreading process is initiated by simultaneously choosing multiple nodes as the spreading sources. In this situation, choosing the top ranked nodes as multiple spreaders is not an optimal strategy, since the chosen nodes are not sufficiently scattered in networks. Therefore, one ideal situation for multiple spreaders case is that the spreaders themselves are not only influential but also they are dispersively distributed in networks, but it is difficult to meet the two conditions together. In this paper, we propose a heuristic clustering (HC) algorithm based on the similarity index to classify nodes into different clusters, and finally the center nodes in clusters are chosen as the multiple spreaders. HC algorithm not only ensures that the multiple spreaders are dispersively distributed in networks but also avoids the selected nodes to be very “negligible”. Compared with the traditional methods, our experimental results on synthetic and real networks indicate that the performance of HC method on influence maximization is more significant. - Highlights: • A heuristic clustering algorithm is proposed to identify the multiple influential spreaders in complex networks. • The algorithm can not only guarantee the selected spreaders are sufficiently scattered but also avoid to be “insignificant”. • The performance of our algorithm is generally better than other methods, regardless of real networks or synthetic networks.
Analysis of Network Clustering Algorithms and Cluster Quality Metrics at Scale
Kobourov, Stephen; Gallant, Mike; Börner, Katy
2016-01-01
Overview Notions of community quality underlie the clustering of networks. While studies surrounding network clustering are increasingly common, a precise understanding of the realtionship between different cluster quality metrics is unknown. In this paper, we examine the relationship between stand-alone cluster quality metrics and information recovery metrics through a rigorous analysis of four widely-used network clustering algorithms—Louvain, Infomap, label propagation, and smart local moving. We consider the stand-alone quality metrics of modularity, conductance, and coverage, and we consider the information recovery metrics of adjusted Rand score, normalized mutual information, and a variant of normalized mutual information used in previous work. Our study includes both synthetic graphs and empirical data sets of sizes varying from 1,000 to 1,000,000 nodes. Cluster Quality Metrics We find significant differences among the results of the different cluster quality metrics. For example, clustering algorithms can return a value of 0.4 out of 1 on modularity but score 0 out of 1 on information recovery. We find conductance, though imperfect, to be the stand-alone quality metric that best indicates performance on the information recovery metrics. Additionally, our study shows that the variant of normalized mutual information used in previous work cannot be assumed to differ only slightly from traditional normalized mutual information. Network Clustering Algorithms Smart local moving is the overall best performing algorithm in our study, but discrepancies between cluster evaluation metrics prevent us from declaring it an absolutely superior algorithm. Interestingly, Louvain performed better than Infomap in nearly all the tests in our study, contradicting the results of previous work in which Infomap was superior to Louvain. We find that although label propagation performs poorly when clusters are less clearly defined, it scales efficiently and accurately to large
A Task-parallel Clustering Algorithm for Structured AMR
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Gunney, B N; Wissink, A M
2004-11-02
A new parallel algorithm, based on the Berger-Rigoutsos algorithm for clustering grid points into logically rectangular regions, is presented. The clustering operation is frequently performed in the dynamic gridding steps of structured adaptive mesh refinement (SAMR) calculations. A previous study revealed that although the cost of clustering is generally insignificant for smaller problems run on relatively few processors, the algorithm scaled inefficiently in parallel and its cost grows with problem size. Hence, it can become significant for large scale problems run on very large parallel machines, such as the new BlueGene system (which has {Omicron}(10{sup 4}) processors). We propose a new task-parallel algorithm designed to reduce communication wait times. Performance was assessed using dynamic SAMR re-gridding operations on up to 16K processors of currently available computers at Lawrence Livermore National Laboratory. The new algorithm was shown to be up to an order of magnitude faster than the baseline algorithm and had better scaling trends.
A Novel Cluster Head Selection Algorithm Based on Fuzzy Clustering and Particle Swarm Optimization.
Ni, Qingjian; Pan, Qianqian; Du, Huimin; Cao, Cen; Zhai, Yuqing
2017-01-01
An important objective of wireless sensor network is to prolong the network life cycle, and topology control is of great significance for extending the network life cycle. Based on previous work, for cluster head selection in hierarchical topology control, we propose a solution based on fuzzy clustering preprocessing and particle swarm optimization. More specifically, first, fuzzy clustering algorithm is used to initial clustering for sensor nodes according to geographical locations, where a sensor node belongs to a cluster with a determined probability, and the number of initial clusters is analyzed and discussed. Furthermore, the fitness function is designed considering both the energy consumption and distance factors of wireless sensor network. Finally, the cluster head nodes in hierarchical topology are determined based on the improved particle swarm optimization. Experimental results show that, compared with traditional methods, the proposed method achieved the purpose of reducing the mortality rate of nodes and extending the network life cycle.
Clustered Self Organising Migrating Algorithm for the Quadratic Assignment Problem
Davendra, Donald; Zelinka, Ivan; Senkerik, Roman
2009-08-01
An approach of population dynamics and clustering for permutative problems is presented in this paper. Diversity indicators are created from solution ordering and its mapping is shown as an advantage for population control in metaheuristics. Self Organising Migrating Algorithm (SOMA) is modified using this approach and vetted with the Quadratic Assignment Problem (QAP). Extensive experimentation is conducted on benchmark problems in this area.
Aufbau algorithms and the structure of small molecular clusters
van de Waal, B.W.
1984-01-01
In a comment [van de Waal (1981). Acta Cryst. A37, 762-764] on a paper by D. E. Williams [Acta Cryst. (1980), A36, 715-723] on the conformation of small clusters of benzene molecules, it was understood that Williams's results had been obtained from the application of an aufbau algorithm.
Adaptive clustering algorithm for community detection in complex networks
Ye, Zhenqing; Hu, Songnian; Yu, Jun
2008-10-01
Community structure is common in various real-world networks; methods or algorithms for detecting such communities in complex networks have attracted great attention in recent years. We introduced a different adaptive clustering algorithm capable of extracting modules from complex networks with considerable accuracy and robustness. In this approach, each node in a network acts as an autonomous agent demonstrating flocking behavior where vertices always travel toward their preferable neighboring groups. An optimal modular structure can emerge from a collection of these active nodes during a self-organization process where vertices constantly regroup. In addition, we show that our algorithm appears advantageous over other competing methods (e.g., the Newman-fast algorithm) through intensive evaluation. The applications in three real-world networks demonstrate the superiority of our algorithm to find communities that are parallel with the appropriate organization in reality.
A HYBRID HEURISTIC ALGORITHM FOR THE CLUSTERED TRAVELING SALESMAN PROBLEM
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Mário Mestria
2016-04-01
Full Text Available ABSTRACT This paper proposes a hybrid heuristic algorithm, based on the metaheuristics Greedy Randomized Adaptive Search Procedure, Iterated Local Search and Variable Neighborhood Descent, to solve the Clustered Traveling Salesman Problem (CTSP. Hybrid Heuristic algorithm uses several variable neighborhood structures combining the intensification (using local search operators and diversification (constructive heuristic and perturbation routine. In the CTSP, the vertices are partitioned into clusters and all vertices of each cluster have to be visited contiguously. The CTSP is -hard since it includes the well-known Traveling Salesman Problem (TSP as a special case. Our hybrid heuristic is compared with three heuristics from the literature and an exact method. Computational experiments are reported for different classes of instances. Experimental results show that the proposed hybrid heuristic obtains competitive results within reasonable computational time.
Analysis of Network Clustering Algorithms and Cluster Quality Metrics at Scale.
Emmons, Scott; Kobourov, Stephen; Gallant, Mike; Börner, Katy
2016-01-01
Notions of community quality underlie the clustering of networks. While studies surrounding network clustering are increasingly common, a precise understanding of the realtionship between different cluster quality metrics is unknown. In this paper, we examine the relationship between stand-alone cluster quality metrics and information recovery metrics through a rigorous analysis of four widely-used network clustering algorithms-Louvain, Infomap, label propagation, and smart local moving. We consider the stand-alone quality metrics of modularity, conductance, and coverage, and we consider the information recovery metrics of adjusted Rand score, normalized mutual information, and a variant of normalized mutual information used in previous work. Our study includes both synthetic graphs and empirical data sets of sizes varying from 1,000 to 1,000,000 nodes. We find significant differences among the results of the different cluster quality metrics. For example, clustering algorithms can return a value of 0.4 out of 1 on modularity but score 0 out of 1 on information recovery. We find conductance, though imperfect, to be the stand-alone quality metric that best indicates performance on the information recovery metrics. Additionally, our study shows that the variant of normalized mutual information used in previous work cannot be assumed to differ only slightly from traditional normalized mutual information. Smart local moving is the overall best performing algorithm in our study, but discrepancies between cluster evaluation metrics prevent us from declaring it an absolutely superior algorithm. Interestingly, Louvain performed better than Infomap in nearly all the tests in our study, contradicting the results of previous work in which Infomap was superior to Louvain. We find that although label propagation performs poorly when clusters are less clearly defined, it scales efficiently and accurately to large graphs with well-defined clusters.
Analysis of Network Clustering Algorithms and Cluster Quality Metrics at Scale.
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Scott Emmons
Full Text Available Notions of community quality underlie the clustering of networks. While studies surrounding network clustering are increasingly common, a precise understanding of the realtionship between different cluster quality metrics is unknown. In this paper, we examine the relationship between stand-alone cluster quality metrics and information recovery metrics through a rigorous analysis of four widely-used network clustering algorithms-Louvain, Infomap, label propagation, and smart local moving. We consider the stand-alone quality metrics of modularity, conductance, and coverage, and we consider the information recovery metrics of adjusted Rand score, normalized mutual information, and a variant of normalized mutual information used in previous work. Our study includes both synthetic graphs and empirical data sets of sizes varying from 1,000 to 1,000,000 nodes.We find significant differences among the results of the different cluster quality metrics. For example, clustering algorithms can return a value of 0.4 out of 1 on modularity but score 0 out of 1 on information recovery. We find conductance, though imperfect, to be the stand-alone quality metric that best indicates performance on the information recovery metrics. Additionally, our study shows that the variant of normalized mutual information used in previous work cannot be assumed to differ only slightly from traditional normalized mutual information.Smart local moving is the overall best performing algorithm in our study, but discrepancies between cluster evaluation metrics prevent us from declaring it an absolutely superior algorithm. Interestingly, Louvain performed better than Infomap in nearly all the tests in our study, contradicting the results of previous work in which Infomap was superior to Louvain. We find that although label propagation performs poorly when clusters are less clearly defined, it scales efficiently and accurately to large graphs with well-defined clusters.
The C4 clustering algorithm: Clusters of galaxies in the Sloan Digital Sky Survey
Energy Technology Data Exchange (ETDEWEB)
Miller, Christopher J.; Nichol, Robert; Reichart, Dan; Wechsler, Risa H.; Evrard, August; Annis, James; McKay, Timothy; Bahcall, Neta; Bernardi, Mariangela; Boehringer,; Connolly, Andrew; Goto, Tomo; Kniazev, Alexie; Lamb, Donald; Postman, Marc; Schneider, Donald; Sheth, Ravi; Voges, Wolfgang; /Cerro-Tololo InterAmerican Obs. /Portsmouth U.,
2005-03-01
We present the ''C4 Cluster Catalog'', a new sample of 748 clusters of galaxies identified in the spectroscopic sample of the Second Data Release (DR2) of the Sloan Digital Sky Survey (SDSS). The C4 cluster-finding algorithm identifies clusters as overdensities in a seven-dimensional position and color space, thus minimizing projection effects that have plagued previous optical cluster selection. The present C4 catalog covers {approx}2600 square degrees of sky and ranges in redshift from z = 0.02 to z = 0.17. The mean cluster membership is 36 galaxies (with redshifts) brighter than r = 17.7, but the catalog includes a range of systems, from groups containing 10 members to massive clusters with over 200 cluster members with redshifts. The catalog provides a large number of measured cluster properties including sky location, mean redshift, galaxy membership, summed r-band optical luminosity (L{sub r}), velocity dispersion, as well as quantitative measures of substructure and the surrounding large-scale environment. We use new, multi-color mock SDSS galaxy catalogs, empirically constructed from the {Lambda}CDM Hubble Volume (HV) Sky Survey output, to investigate the sensitivity of the C4 catalog to the various algorithm parameters (detection threshold, choice of passbands and search aperture), as well as to quantify the purity and completeness of the C4 cluster catalog. These mock catalogs indicate that the C4 catalog is {approx_equal}90% complete and 95% pure above M{sub 200} = 1 x 10{sup 14} h{sup -1}M{sub {circle_dot}} and within 0.03 {le} z {le} 0.12. Using the SDSS DR2 data, we show that the C4 algorithm finds 98% of X-ray identified clusters and 90% of Abell clusters within 0.03 {le} z {le} 0.12. Using the mock galaxy catalogs and the full HV dark matter simulations, we show that the L{sub r} of a cluster is a more robust estimator of the halo mass (M{sub 200}) than the galaxy line-of-sight velocity dispersion or the richness of the cluster
A novel hierarchical clustering algorithm for gene sequences
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Wei Dan
2012-07-01
Full Text Available Abstract Background Clustering DNA sequences into functional groups is an important problem in bioinformatics. We propose a new alignment-free algorithm, mBKM, based on a new distance measure, DMk, for clustering gene sequences. This method transforms DNA sequences into the feature vectors which contain the occurrence, location and order relation of k-tuples in DNA sequence. Afterwards, a hierarchical procedure is applied to clustering DNA sequences based on the feature vectors. Results The proposed distance measure and clustering method are evaluated by clustering functionally related genes and by phylogenetic analysis. This method is also compared with BlastClust, CD-HIT-EST and some others. The experimental results show our method is effective in classifying DNA sequences with similar biological characteristics and in discovering the underlying relationship among the sequences. Conclusions We introduced a novel clustering algorithm which is based on a new sequence similarity measure. It is effective in classifying DNA sequences with similar biological characteristics and in discovering the relationship among the sequences.
Partitioning clustering algorithms for protein sequence data sets
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Fayech Sondes
2009-04-01
Full Text Available Abstract Background Genome-sequencing projects are currently producing an enormous amount of new sequences and cause the rapid increasing of protein sequence databases. The unsupervised classification of these data into functional groups or families, clustering, has become one of the principal research objectives in structural and functional genomics. Computer programs to automatically and accurately classify sequences into families become a necessity. A significant number of methods have addressed the clustering of protein sequences and most of them can be categorized in three major groups: hierarchical, graph-based and partitioning methods. Among the various sequence clustering methods in literature, hierarchical and graph-based approaches have been widely used. Although partitioning clustering techniques are extremely used in other fields, few applications have been found in the field of protein sequence clustering. It is not fully demonstrated if partitioning methods can be applied to protein sequence data and if these methods can be efficient compared to the published clustering methods. Methods We developed four partitioning clustering approaches using Smith-Waterman local-alignment algorithm to determine pair-wise similarities of sequences. Four different sets of protein sequences were used as evaluation data sets for the proposed methods. Results We show that these methods outperform several other published clustering methods in terms of correctly predicting a classifier and especially in terms of the correctness of the provided prediction. The software is available to academic users from the authors upon request.
Which clustering algorithm is better for predicting protein complexes?
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Moschopoulos Charalampos N
2011-12-01
Full Text Available Abstract Background Protein-Protein interactions (PPI play a key role in determining the outcome of most cellular processes. The correct identification and characterization of protein interactions and the networks, which they comprise, is critical for understanding the molecular mechanisms within the cell. Large-scale techniques such as pull down assays and tandem affinity purification are used in order to detect protein interactions in an organism. Today, relatively new high-throughput methods like yeast two hybrid, mass spectrometry, microarrays, and phage display are also used to reveal protein interaction networks. Results In this paper we evaluated four different clustering algorithms using six different interaction datasets. We parameterized the MCL, Spectral, RNSC and Affinity Propagation algorithms and applied them to six PPI datasets produced experimentally by Yeast 2 Hybrid (Y2H and Tandem Affinity Purification (TAP methods. The predicted clusters, so called protein complexes, were then compared and benchmarked with already known complexes stored in published databases. Conclusions While results may differ upon parameterization, the MCL and RNSC algorithms seem to be more promising and more accurate at predicting PPI complexes. Moreover, they predict more complexes than other reviewed algorithms in absolute numbers. On the other hand the spectral clustering algorithm achieves the highest valid prediction rate in our experiments. However, it is nearly always outperformed by both RNSC and MCL in terms of the geometrical accuracy while it generates the fewest valid clusters than any other reviewed algorithm. This article demonstrates various metrics to evaluate the accuracy of such predictions as they are presented in the text below. Supplementary material can be found at: http://www.bioacademy.gr/bioinformatics/projects/ppireview.htm
Analysis and Implementation of Graph Clustering for Digital News Using Star Clustering Algorithm
Ahdi, A. B.; SW, K. R.; Herdiani, A.
2017-01-01
Since Web 2.0 notion emerged and is used extensively by many services in the Internet, we see an unprecedented proliferation of digital news. Those digital news is very rich in term of content and link to other news/sources but lack of category information. This make the user could not easily identify or grouping all the news that they read into set of groups. Naturally, digital news are linked data because every digital new has relation/connection with other digital news/resources. The most appropriate model for linked data is graph model. Graph model is suitable for this purpose due its flexibility in describing relation and its easy-to-understand visualization. To handle the grouping issue, we use graph clustering approach. There are many graph clustering algorithm available, such as MST Clustering, Chameleon, Makarov Clustering and Star Clustering. From all of these options, we choose Star Clustering because this algorithm is more easy-to-understand, more accurate, efficient and guarantee the quality of clusters results. In this research, we investigate the accuracy of the cluster results by comparing it with expert judgement. We got quite high accuracy level, which is 80.98% and for the cluster quality, we got promising result which is 62.87%.
Evaluation of clustering algorithms for protein-protein interaction networks
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van Helden Jacques
2006-11-01
Full Text Available Abstract Background Protein interactions are crucial components of all cellular processes. Recently, high-throughput methods have been developed to obtain a global description of the interactome (the whole network of protein interactions for a given organism. In 2002, the yeast interactome was estimated to contain up to 80,000 potential interactions. This estimate is based on the integration of data sets obtained by various methods (mass spectrometry, two-hybrid methods, genetic studies. High-throughput methods are known, however, to yield a non-negligible rate of false positives, and to miss a fraction of existing interactions. The interactome can be represented as a graph where nodes correspond with proteins and edges with pairwise interactions. In recent years clustering methods have been developed and applied in order to extract relevant modules from such graphs. These algorithms require the specification of parameters that may drastically affect the results. In this paper we present a comparative assessment of four algorithms: Markov Clustering (MCL, Restricted Neighborhood Search Clustering (RNSC, Super Paramagnetic Clustering (SPC, and Molecular Complex Detection (MCODE. Results A test graph was built on the basis of 220 complexes annotated in the MIPS database. To evaluate the robustness to false positives and false negatives, we derived 41 altered graphs by randomly removing edges from or adding edges to the test graph in various proportions. Each clustering algorithm was applied to these graphs with various parameter settings, and the clusters were compared with the annotated complexes. We analyzed the sensitivity of the algorithms to the parameters and determined their optimal parameter values. We also evaluated their robustness to alterations of the test graph. We then applied the four algorithms to six graphs obtained from high-throughput experiments and compared the resulting clusters with the annotated complexes. Conclusion This
Lennington, R. K.; Johnson, J. K.
1979-01-01
An efficient procedure which clusters data using a completely unsupervised clustering algorithm and then uses labeled pixels to label the resulting clusters or perform a stratified estimate using the clusters as strata is developed. Three clustering algorithms, CLASSY, AMOEBA, and ISOCLS, are compared for efficiency. Three stratified estimation schemes and three labeling schemes are also considered and compared.
Improved gravitation field algorithm and its application in hierarchical clustering.
Zheng, Ming; Sun, Ying; Liu, Gui-Xia; Zhou, You; Zhou, Chun-Guang
2012-01-01
Gravitation field algorithm (GFA) is a new optimization algorithm which is based on an imitation of natural phenomena. GFA can do well both for searching global minimum and multi-minima in computational biology. But GFA needs to be improved for increasing efficiency, and modified for applying to some discrete data problems in system biology. An improved GFA called IGFA was proposed in this paper. Two parts were improved in IGFA. The first one is the rule of random division, which is a reasonable strategy and makes running time shorter. The other one is rotation factor, which can improve the accuracy of IGFA. And to apply IGFA to the hierarchical clustering, the initial part and the movement operator were modified. Two kinds of experiments were used to test IGFA. And IGFA was applied to hierarchical clustering. The global minimum experiment was used with IGFA, GFA, GA (genetic algorithm) and SA (simulated annealing). Multi-minima experiment was used with IGFA and GFA. The two experiments results were compared with each other and proved the efficiency of IGFA. IGFA is better than GFA both in accuracy and running time. For the hierarchical clustering, IGFA is used to optimize the smallest distance of genes pairs, and the results were compared with GA and SA, singular-linkage clustering, UPGMA. The efficiency of IGFA is proved.
Improved gravitation field algorithm and its application in hierarchical clustering.
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Ming Zheng
Full Text Available BACKGROUND: Gravitation field algorithm (GFA is a new optimization algorithm which is based on an imitation of natural phenomena. GFA can do well both for searching global minimum and multi-minima in computational biology. But GFA needs to be improved for increasing efficiency, and modified for applying to some discrete data problems in system biology. METHOD: An improved GFA called IGFA was proposed in this paper. Two parts were improved in IGFA. The first one is the rule of random division, which is a reasonable strategy and makes running time shorter. The other one is rotation factor, which can improve the accuracy of IGFA. And to apply IGFA to the hierarchical clustering, the initial part and the movement operator were modified. RESULTS: Two kinds of experiments were used to test IGFA. And IGFA was applied to hierarchical clustering. The global minimum experiment was used with IGFA, GFA, GA (genetic algorithm and SA (simulated annealing. Multi-minima experiment was used with IGFA and GFA. The two experiments results were compared with each other and proved the efficiency of IGFA. IGFA is better than GFA both in accuracy and running time. For the hierarchical clustering, IGFA is used to optimize the smallest distance of genes pairs, and the results were compared with GA and SA, singular-linkage clustering, UPGMA. The efficiency of IGFA is proved.
Adaptive k-means algorithm for overlapped graph clustering.
Bello-Orgaz, Gema; Menéndez, Héctor D; Camacho, David
2012-10-01
The graph clustering problem has become highly relevant due to the growing interest of several research communities in social networks and their possible applications. Overlapped graph clustering algorithms try to find subsets of nodes that can belong to different clusters. In social network-based applications it is quite usual for a node of the network to belong to different groups, or communities, in the graph. Therefore, algorithms trying to discover, or analyze, the behavior of these networks needed to handle this feature, detecting and identifying the overlapped nodes. This paper shows a soft clustering approach based on a genetic algorithm where a new encoding is designed to achieve two main goals: first, the automatic adaptation of the number of communities that can be detected and second, the definition of several fitness functions that guide the searching process using some measures extracted from graph theory. Finally, our approach has been experimentally tested using the Eurovision contest dataset, a well-known social-based data network, to show how overlapped communities can be found using our method.
Exploring New Clustering Algorithms for the CMS Tracker FED
Gamboa Alvarado, Jose Leandro
2013-01-01
In the current Front End (FE) firmware clusters of hits within the APV frames are found using a simple threshold comparison (which is made between the data and a 3 or 5 sigma strip noise cut) on reordered pedestal and Common Mode (CM) noise subtracted data. In addition the CM noise subtraction requires the baseline of each APV frame to be approximately uniform. Therefore, the current algorithm will fail if the APV baseline exhibits large-scale non-uniform behavior. Under very high luminosity conditions the assumption of a uniform APV baseline breaks down and the FED is unable to maintain a high efficiency of cluster finding. \
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
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Morris John H
2011-11-01
Full Text Available Abstract Background In the post-genomic era, the rapid increase in high-throughput data calls for computational tools capable of integrating data of diverse types and facilitating recognition of biologically meaningful patterns within them. For example, protein-protein interaction data sets have been clustered to identify stable complexes, but scientists lack easily accessible tools to facilitate combined analyses of multiple data sets from different types of experiments. Here we present clusterMaker, a Cytoscape plugin that implements several clustering algorithms and provides network, dendrogram, and heat map views of the results. The Cytoscape network is linked to all of the other views, so that a selection in one is immediately reflected in the others. clusterMaker is the first Cytoscape plugin to implement such a wide variety of clustering algorithms and visualizations, including the only implementations of hierarchical clustering, dendrogram plus heat map visualization (tree view, k-means, k-medoid, SCPS, AutoSOME, and native (Java MCL. Results Results are presented in the form of three scenarios of use: analysis of protein expression data using a recently published mouse interactome and a mouse microarray data set of nearly one hundred diverse cell/tissue types; the identification of protein complexes in the yeast Saccharomyces cerevisiae; and the cluster analysis of the vicinal oxygen chelate (VOC enzyme superfamily. For scenario one, we explore functionally enriched mouse interactomes specific to particular cellular phenotypes and apply fuzzy clustering. For scenario two, we explore the prefoldin complex in detail using both physical and genetic interaction clusters. For scenario three, we explore the possible annotation of a protein as a methylmalonyl-CoA epimerase within the VOC superfamily. Cytoscape session files for all three scenarios are provided in the Additional Files section. Conclusions The Cytoscape plugin cluster
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
2011-01-01
Background In the post-genomic era, the rapid increase in high-throughput data calls for computational tools capable of integrating data of diverse types and facilitating recognition of biologically meaningful patterns within them. For example, protein-protein interaction data sets have been clustered to identify stable complexes, but scientists lack easily accessible tools to facilitate combined analyses of multiple data sets from different types of experiments. Here we present clusterMaker, a Cytoscape plugin that implements several clustering algorithms and provides network, dendrogram, and heat map views of the results. The Cytoscape network is linked to all of the other views, so that a selection in one is immediately reflected in the others. clusterMaker is the first Cytoscape plugin to implement such a wide variety of clustering algorithms and visualizations, including the only implementations of hierarchical clustering, dendrogram plus heat map visualization (tree view), k-means, k-medoid, SCPS, AutoSOME, and native (Java) MCL. Results Results are presented in the form of three scenarios of use: analysis of protein expression data using a recently published mouse interactome and a mouse microarray data set of nearly one hundred diverse cell/tissue types; the identification of protein complexes in the yeast Saccharomyces cerevisiae; and the cluster analysis of the vicinal oxygen chelate (VOC) enzyme superfamily. For scenario one, we explore functionally enriched mouse interactomes specific to particular cellular phenotypes and apply fuzzy clustering. For scenario two, we explore the prefoldin complex in detail using both physical and genetic interaction clusters. For scenario three, we explore the possible annotation of a protein as a methylmalonyl-CoA epimerase within the VOC superfamily. Cytoscape session files for all three scenarios are provided in the Additional Files section. Conclusions The Cytoscape plugin clusterMaker provides a number of clustering
A density-based clustering algorithm for earthquake zoning
Scitovski, Sanja
2018-01-01
A possibility of applying the density-based clustering algorithm Rough-DBSCAN for earthquake zoning is considered in the paper. By using density-based clustering for earthquake zoning it is possible to recognize nonconvex shapes, what gives much more realistic results. Special attention is thereby paid to the problem of determining the corresponding value of the parameter ɛ in the algorithm. The size of the parameter ɛ significantly influences the recognizing number and configuration of earthquake zones. A method for selecting the parameter ɛ in the case of big data is also proposed. The method is applied to the problem of earthquake data zoning in a wider area of the Republic of Croatia.
An efficient video dehazing algorithm based on spectral clustering
Zhao, Fan; Yao, Zao; Song, XiaoFang; Yao, Yi
2017-07-01
Image and video dehazing is a popular topic in the field of computer vision and digital image processing. A fast, optimized dehazing algorithm was recently proposed that enhances contrast and reduces flickering artifacts in a dehazed video sequence by minimizing a cost function that makes transmission values spatially and temporally coherent. However, its fixed-size block partitioning leads to block effects. Further, the weak edges in a hazy image are not addressed. Hence, a video dehazing algorithm based on customized spectral clustering is proposed. To avoid block artifacts, the spectral clustering is customized to segment static scenes to ensure the same target has the same transmission value. Assuming that dehazed edge images have richer detail than before restoration, an edge cost function is added to the ransmission model. The experimental results demonstrate that the proposed method provides higher dehazing quality and lower time complexity than the previous technique.
FCM Clustering Algorithms for Segmentation of Brain MR Images
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Yogita K. Dubey
2016-01-01
Full Text Available The study of brain disorders requires accurate tissue segmentation of magnetic resonance (MR brain images which is very important for detecting tumors, edema, and necrotic tissues. Segmentation of brain images, especially into three main tissue types: Cerebrospinal Fluid (CSF, Gray Matter (GM, and White Matter (WM, has important role in computer aided neurosurgery and diagnosis. Brain images mostly contain noise, intensity inhomogeneity, and weak boundaries. Therefore, accurate segmentation of brain images is still a challenging area of research. This paper presents a review of fuzzy c-means (FCM clustering algorithms for the segmentation of brain MR images. The review covers the detailed analysis of FCM based algorithms with intensity inhomogeneity correction and noise robustness. Different methods for the modification of standard fuzzy objective function with updating of membership and cluster centroid are also discussed.
Advanced defect detection algorithm using clustering in ultrasonic NDE
Gongzhang, Rui; Gachagan, Anthony
2016-02-01
A range of materials used in industry exhibit scattering properties which limits ultrasonic NDE. Many algorithms have been proposed to enhance defect detection ability, such as the well-known Split Spectrum Processing (SSP) technique. Scattering noise usually cannot be fully removed and the remaining noise can be easily confused with real feature signals, hence becoming artefacts during the image interpretation stage. This paper presents an advanced algorithm to further reduce the influence of artefacts remaining in A-scan data after processing using a conventional defect detection algorithm. The raw A-scan data can be acquired from either traditional single transducer or phased array configurations. The proposed algorithm uses the concept of unsupervised machine learning to cluster segmental defect signals from pre-processed A-scans into different classes. The distinction and similarity between each class and the ensemble of randomly selected noise segments can be observed by applying a classification algorithm. Each class will then be labelled as `legitimate reflector' or `artefacts' based on this observation and the expected probability of defection (PoD) and probability of false alarm (PFA) determined. To facilitate data collection and validate the proposed algorithm, a 5MHz linear array transducer is used to collect A-scans from both austenitic steel and Inconel samples. Each pulse-echo A-scan is pre-processed using SSP and the subsequent application of the proposed clustering algorithm has provided an additional reduction to PFA while maintaining PoD for both samples compared with SSP results alone.
Synchronous Firefly Algorithm for Cluster Head Selection in WSN.
Baskaran, Madhusudhanan; Sadagopan, Chitra
2015-01-01
Wireless Sensor Network (WSN) consists of small low-cost, low-power multifunctional nodes interconnected to efficiently aggregate and transmit data to sink. Cluster-based approaches use some nodes as Cluster Heads (CHs) and organize WSNs efficiently for aggregation of data and energy saving. A CH conveys information gathered by cluster nodes and aggregates/compresses data before transmitting it to a sink. However, this additional responsibility of the node results in a higher energy drain leading to uneven network degradation. Low Energy Adaptive Clustering Hierarchy (LEACH) offsets this by probabilistically rotating cluster heads role among nodes with energy above a set threshold. CH selection in WSN is NP-Hard as optimal data aggregation with efficient energy savings cannot be solved in polynomial time. In this work, a modified firefly heuristic, synchronous firefly algorithm, is proposed to improve the network performance. Extensive simulation shows the proposed technique to perform well compared to LEACH and energy-efficient hierarchical clustering. Simulations show the effectiveness of the proposed method in decreasing the packet loss ratio by an average of 9.63% and improving the energy efficiency of the network when compared to LEACH and EEHC.
Nonuniform Sparse Data Clustering Cascade Algorithm Based on Dynamic Cumulative Entropy
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Ning Li
2016-01-01
Full Text Available A small amount of prior knowledge and randomly chosen initial cluster centers have a direct impact on the accuracy of the performance of iterative clustering algorithm. In this paper we propose a new algorithm to compute initial cluster centers for k-means clustering and the best number of the clusters with little prior knowledge and optimize clustering result. It constructs the Euclidean distance control factor based on aggregation density sparse degree to select the initial cluster center of nonuniform sparse data and obtains initial data clusters by multidimensional diffusion density distribution. Multiobjective clustering approach based on dynamic cumulative entropy is adopted to optimize the initial data clusters and the best number of the clusters. The experimental results show that the newly proposed algorithm has good performance to obtain the initial cluster centers for the k-means algorithm and it effectively improves the clustering accuracy of nonuniform sparse data by about 5%.
Directory of Open Access Journals (Sweden)
Ajay Singh Yadav
2017-12-01
Full Text Available The purpose of the proposed study is to give a new dimension on warehouse with artificial bee colony algorithm using genetic algorithm and particle swarm optimization algorithm processes in six stages - 11 member supply chain in electronic component inventory optimization to describe the certain and uncertain market demand which is based on supply reliability and to develop more realistic and more flexible models. We hope that the proposed study has a great potential to solve various practical tribulations related to the warehouse using genetic algorithm processes in six stages - 11 member supply chain in electronic component inventory optimization and also provide a general review for the application of soft computing techniques like genetic algorithms to use for improve the effectiveness and efficiency for various aspect of warehouse with artificial bee colony algorithm using genetic algorithm and particle swarm optimization algorithm.
Community Clustering Algorithm in Complex Networks Based on Microcommunity Fusion
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Jin Qi
2015-01-01
Full Text Available With the further research on physical meaning and digital features of the community structure in complex networks in recent years, the improvement of effectiveness and efficiency of the community mining algorithms in complex networks has become an important subject in this area. This paper puts forward a concept of the microcommunity and gets final mining results of communities through fusing different microcommunities. This paper starts with the basic definition of the network community and applies Expansion to the microcommunity clustering which provides prerequisites for the microcommunity fusion. The proposed algorithm is more efficient and has higher solution quality compared with other similar algorithms through the analysis of test results based on network data set.
An improved clustering algorithm based on reverse learning in intelligent transportation
Qiu, Guoqing; Kou, Qianqian; Niu, Ting
2017-05-01
With the development of artificial intelligence and data mining technology, big data has gradually entered people's field of vision. In the process of dealing with large data, clustering is an important processing method. By introducing the reverse learning method in the clustering process of PAM clustering algorithm, to further improve the limitations of one-time clustering in unsupervised clustering learning, and increase the diversity of clustering clusters, so as to improve the quality of clustering. The algorithm analysis and experimental results show that the algorithm is feasible.
Simultaneous Clustering and Model Selection: Algorithm, Theory and Applications.
Li, Zhuwen; Cheong, Loong-Fah; Yang, Shuoguang; Toh, Kim-Chuan
2017-08-14
While clustering has been well studied in the past decade, model selection has drawn much less attention due to the difficulty of the problem. In this paper, we address both problems in a joint manner by recovering an ideal affinity tensor from an imperfect input. By taking into account the relationship of the affinities induced by the cluster structures, we are able to significantly improve the affinity input, such as repairing those entries corrupted by gross outliers. More importantly, the recovered ideal affinity tensor also directly indicates the number of clusters and their membership, thus solving the model selection and clustering jointly. To enforce the requisite global consistency in the affinities demanded by the cluster structure, we impose a number of constraints, specifically, among others, the tensor should be low rank and sparse, and it should obey what we call the rank-1 sum constraint. To solve this highly non-smooth and non-convex problem, we exploit the mathematical structures, and express the original problem in an equivalent form amenable for numerical optimization and convergence analysis. To scale to large problem sizes, we also propose an alternative formulation, so that those problems can be efficiently solved via stochastic optimization in an online fashion. We evaluate our algorithm with different applications to demonstrate its superiority, and show it can adapt to a large variety of settings.
Clustering Algorithms: Their Application to Gene Expression Data
Oyelade, Jelili; Isewon, Itunuoluwa; Oladipupo, Funke; Aromolaran, Olufemi; Uwoghiren, Efosa; Ameh, Faridah; Achas, Moses; Adebiyi, Ezekiel
2016-01-01
Gene expression data hide vital information required to understand the biological process that takes place in a particular organism in relation to its environment. Deciphering the hidden patterns in gene expression data proffers a prodigious preference to strengthen the understanding of functional genomics. The complexity of biological networks and the volume of genes present increase the challenges of comprehending and interpretation of the resulting mass of data, which consists of millions of measurements; these data also inhibit vagueness, imprecision, and noise. Therefore, the use of clustering techniques is a first step toward addressing these challenges, which is essential in the data mining process to reveal natural structures and identify interesting patterns in the underlying data. The clustering of gene expression data has been proven to be useful in making known the natural structure inherent in gene expression data, understanding gene functions, cellular processes, and subtypes of cells, mining useful information from noisy data, and understanding gene regulation. The other benefit of clustering gene expression data is the identification of homology, which is very important in vaccine design. This review examines the various clustering algorithms applicable to the gene expression data in order to discover and provide useful knowledge of the appropriate clustering technique that will guarantee stability and high degree of accuracy in its analysis procedure. PMID:27932867
National Research Council Canada - National Science Library
Mahmoodabadi, M J; Taherkhorsandi, M; Bagheri, A
2014-01-01
.... To eliminate this process and design the parameters of the proposed controller, the multiobjective evolutionary algorithms, that is, the proposed method, modified NSGAII, Sigma method, and MATLAB's...
Directory of Open Access Journals (Sweden)
Ming-Ta Yang
2013-01-01
Full Text Available In power systems, determining the values of time dial setting (TDS and the plug setting (PS for directional overcurrent relays (DOCRs is an extremely constrained optimization problem that has been previously described and solved as a nonlinear programming problem. Optimization coordination problems of near-end faults and far-end faults occurring simultaneously in circuits with various topologies, including fixed and variable network topologies, are considered in this study. The aim of this study was to apply the Nelder-Mead (NM simplex search method and particle swarm optimization (PSO to solve this optimization problem. The proposed NM-PSO method has the advantage of NM algorithm, with a quicker movement toward optimal solution, as well as the advantage of PSO algorithm in the ability to obtain globally optimal solution. Neither a conventional PSO nor the proposed NM-PSO method is capable of dealing with constrained optimization problems. Therefore, we use the gradient-based repair method embedded in a conventional PSO and the proposed NM-PSO. This study used an IEEE 8-bus test system as a case study to compare the convergence performance of the proposed NM-PSO method and a conventional PSO approach. The results demonstrate that a robust and optimal solution can be obtained efficiently by implementing the proposal.
Development of Automatic Cluster Algorithm for Microcalcification in Digital Mammography
Energy Technology Data Exchange (ETDEWEB)
Choi, Seok Yoon [Dept. of Medical Engineering, Korea University, Seoul (Korea, Republic of); Kim, Chang Soo [Dept. of Radiological Science, College of Health Sciences, Catholic University of Pusan, Pusan (Korea, Republic of)
2009-03-15
Digital Mammography is an efficient imaging technique for the detection and diagnosis of breast pathological disorders. Six mammographic criteria such as number of cluster, number, size, extent and morphologic shape of microcalcification, and presence of mass, were reviewed and correlation with pathologic diagnosis were evaluated. It is very important to find breast cancer early when treatment can reduce deaths from breast cancer and breast incision. In screening breast cancer, mammography is typically used to view the internal organization. Clusterig microcalcifications on mammography represent an important feature of breast mass, especially that of intraductal carcinoma. Because microcalcification has high correlation with breast cancer, a cluster of a microcalcification can be very helpful for the clinical doctor to predict breast cancer. For this study, three steps of quantitative evaluation are proposed : DoG filter, adaptive thresholding, Expectation maximization. Through the proposed algorithm, each cluster in the distribution of microcalcification was able to measure the number calcification and length of cluster also can be used to automatically diagnose breast cancer as indicators of the primary diagnosis.
Position control of nonlinear hydraulic system using an improved PSO based PID controller
Ye, Yi; Yin, Chen-Bo; Gong, Yue; Zhou, Jun-jing
2017-01-01
This paper addresses the position control of valve-controlled cylinder system employed in hydraulic excavator. Nonlinearities such as dead zone, saturation, discharge coefficient and friction existed in the system are highlighted during the mathematical modeling. On this basis, simulation model is established and then validated against experiments. Aim for achieving excellent position control performances, an improved particle swarm optimization (PSO) algorithm is presented to search for the optimal proportional-integral-derivative (PID) controller gains for the nonlinear hydraulic system. The proposed algorithm is a hybrid based on the standard PSO algorithm but with the addition of selection and crossover operators from genetic algorithm in order to enhance the searching efficiency. Furthermore, a nonlinear decreasing scheme for the inertia weight of the improved PSO algorithm is adopted to balance global exploration and local exploration abilities of particles. Then a co-simulation platform combining the simulation model with the improved PSO tuning based PID controller is developed. Comparisons of the improved PSO, standard PSO and Phase Margin (PM) tuning methods are carried out with three position references as step signal, ramp signal and sinusoidal wave using the co-simulation platform. The results demonstrated that the improved PSO algorithm can perform well in PID control for positioning of nonlinear hydraulic system.
Handayani, D.; Nuraini, N.; Tse, O.; Saragih, R.; Naiborhu, J.
2016-04-01
PSO is a computational optimization method motivated by the social behavior of organisms like bird flocking, fish schooling and human social relations. PSO is one of the most important swarm intelligence algorithms. In this study, we analyze the convergence of PSO when it is applied to with-in host dengue infection treatment model simulation in our early research. We used PSO method to construct the initial adjoin equation and to solve a control problem. Its properties of control input on the continuity of objective function and ability of adapting to the dynamic environment made us have to analyze the convergence of PSO. With the convergence analysis of PSO we will have some parameters that ensure the convergence result of numerical simulations on this model using PSO.
A Heuristic Task Scheduling Algorithm for Heterogeneous Virtual Clusters
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Weiwei Lin
2016-01-01
Full Text Available Cloud computing provides on-demand computing and storage services with high performance and high scalability. However, the rising energy consumption of cloud data centers has become a prominent problem. In this paper, we first introduce an energy-aware framework for task scheduling in virtual clusters. The framework consists of a task resource requirements prediction module, an energy estimate module, and a scheduler with a task buffer. Secondly, based on this framework, we propose a virtual machine power efficiency-aware greedy scheduling algorithm (VPEGS. As a heuristic algorithm, VPEGS estimates task energy by considering factors including task resource demands, VM power efficiency, and server workload before scheduling tasks in a greedy manner. We simulated a heterogeneous VM cluster and conducted experiment to evaluate the effectiveness of VPEGS. Simulation results show that VPEGS effectively reduced total energy consumption by more than 20% without producing large scheduling overheads. With the similar heuristic ideology, it outperformed Min-Min and RASA with respect to energy saving by about 29% and 28%, respectively.
Ternary alloy material prediction using genetic algorithm and cluster expansion
Energy Technology Data Exchange (ETDEWEB)
Chen, Chong [Iowa State Univ., Ames, IA (United States)
2015-12-01
This thesis summarizes our study on the crystal structures prediction of Fe-V-Si system using genetic algorithm and cluster expansion. Our goal is to explore and look for new stable compounds. We started from the current ten known experimental phases, and calculated formation energies of those compounds using density functional theory (DFT) package, namely, VASP. The convex hull was generated based on the DFT calculations of the experimental known phases. Then we did random search on some metal rich (Fe and V) compositions and found that the lowest energy structures were body centered cube (bcc) underlying lattice, under which we did our computational systematic searches using genetic algorithm and cluster expansion. Among hundreds of the searched compositions, thirteen were selected and DFT formation energies were obtained by VASP. The stability checking of those thirteen compounds was done in reference to the experimental convex hull. We found that the composition, 24-8-16, i.e., Fe_{3}VSi_{2} is a new stable phase and it can be very inspiring to the future experiments.
SVM classification model in depression recognition based on mutation PSO parameter optimization
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Zhang Ming
2017-01-01
Full Text Available At present, the clinical diagnosis of depression is mainly through structured interviews by psychiatrists, which is lack of objective diagnostic methods, so it causes the higher rate of misdiagnosis. In this paper, a method of depression recognition based on SVM and particle swarm optimization algorithm mutation is proposed. To address on the problem that particle swarm optimization (PSO algorithm easily trap in local optima, we propose a feedback mutation PSO algorithm (FBPSO to balance the local search and global exploration ability, so that the parameters of the classification model is optimal. We compared different PSO mutation algorithms about classification accuracy for depression, and found the classification accuracy of support vector machine (SVM classifier based on feedback mutation PSO algorithm is the highest. Our study promotes important reference value for establishing auxiliary diagnostic used in depression recognition of clinical diagnosis.
jClustering, an open framework for the development of 4D clustering algorithms.
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José María Mateos-Pérez
Full Text Available We present jClustering, an open framework for the design of clustering algorithms in dynamic medical imaging. We developed this tool because of the difficulty involved in manually segmenting dynamic PET images and the lack of availability of source code for published segmentation algorithms. Providing an easily extensible open tool encourages publication of source code to facilitate the process of comparing algorithms and provide interested third parties with the opportunity to review code. The internal structure of the framework allows an external developer to implement new algorithms easily and quickly, focusing only on the particulars of the method being implemented and not on image data handling and preprocessing. This tool has been coded in Java and is presented as an ImageJ plugin in order to take advantage of all the functionalities offered by this imaging analysis platform. Both binary packages and source code have been published, the latter under a free software license (GNU General Public License to allow modification if necessary.
A clustering method of Chinese medicine prescriptions based on modified firefly algorithm.
Yuan, Feng; Liu, Hong; Chen, Shou-Qiang; Xu, Liang
2016-12-01
This paper is aimed to study the clustering method for Chinese medicine (CM) medical cases. The traditional K-means clustering algorithm had shortcomings such as dependence of results on the selection of initial value, trapping in local optimum when processing prescriptions form CM medical cases. Therefore, a new clustering method based on the collaboration of firefly algorithm and simulated annealing algorithm was proposed. This algorithm dynamically determined the iteration of firefly algorithm and simulates sampling of annealing algorithm by fitness changes, and increased the diversity of swarm through expansion of the scope of the sudden jump, thereby effectively avoiding premature problem. The results from confirmatory experiments for CM medical cases suggested that, comparing with traditional K-means clustering algorithms, this method was greatly improved in the individual diversity and the obtained clustering results, the computing results from this method had a certain reference value for cluster analysis on CM prescriptions.
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Mingwei Leng
2013-01-01
Full Text Available The accuracy of most of the existing semisupervised clustering algorithms based on small size of labeled dataset is low when dealing with multidensity and imbalanced datasets, and labeling data is quite expensive and time consuming in many real-world applications. This paper focuses on active data selection and semisupervised clustering algorithm in multidensity and imbalanced datasets and proposes an active semisupervised clustering algorithm. The proposed algorithm uses an active mechanism for data selection to minimize the amount of labeled data, and it utilizes multithreshold to expand labeled datasets on multidensity and imbalanced datasets. Three standard datasets and one synthetic dataset are used to demonstrate the proposed algorithm, and the experimental results show that the proposed semisupervised clustering algorithm has a higher accuracy and a more stable performance in comparison to other clustering and semisupervised clustering algorithms, especially when the datasets are multidensity and imbalanced.
Solving a molecular docking problem by the modified PSO method
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A. P. Karpenko
2014-01-01
Full Text Available The paper presents an canonical method of the swarm particles in two modifications to raise this method efficiency in solving multi-extreme problems of high dimension optimization. The essence of PSO-M1 modification is to form two new points to attract swarm particles (along with the points which are responsible for inertial, cognitive, and social components of canonical method. These new points represent the best points of sets of particles-neighbours of a given point. The modification aims to diversify search. All free parameters of the PSO-M1 method (as well as an canonical method are static. In contrast, one of such parameters of PSO-M2 modification is dynamic. So this modification represents an example of a self-adaptive method of optimization. The modification aims to intensify search. A computing experiment to study the method efficiency and its abovementioned modifications at solving the test problems of optimization showed advantages of offered modifications in comparison with canonical method, revealed a superiority of PSO-M2 modification both over canonical method, and over PSO-M1 modification. Using the PSO-M2 method allows us to solve the 28-dimensional molecular docking problem of HIV1 protease and darunaviry 3U7S as the molecules of receptor and a ligand, respectively. Results of computing experiment have shown that the PSO-M2 method successfully finds the position of ligand close to native and can be recommended for solving the molecular docking problems as an alternative to genetic algorithm.
Gong, Lina; Xu, Tao; Zhang, Wei; Li, Xuhong; Wang, Xia; Pan, Wenwen
2017-03-01
The traditional microblog recommendation algorithm has the problems of low efficiency and modest effect in the era of big data. In the aim of solving these issues, this paper proposed a mixed recommendation algorithm with user clustering. This paper first introduced the situation of microblog marketing industry. Then, this paper elaborates the user interest modeling process and detailed advertisement recommendation methods. Finally, this paper compared the mixed recommendation algorithm with the traditional classification algorithm and mixed recommendation algorithm without user clustering. The results show that the mixed recommendation algorithm with user clustering has good accuracy and recall rate in the microblog advertisements promotion.
Mahmoodabadi, M J; Taherkhorsandi, M; Bagheri, A
2014-01-01
An optimal robust state feedback tracking controller is introduced to control a biped robot. In the literature, the parameters of the controller are usually determined by a tedious trial and error process. To eliminate this process and design the parameters of the proposed controller, the multiobjective evolutionary algorithms, that is, the proposed method, modified NSGAII, Sigma method, and MATLAB's Toolbox MOGA, are employed in this study. Among the used evolutionary optimization algorithms to design the controller for biped robots, the proposed method operates better in the aspect of designing the controller since it provides ample opportunities for designers to choose the most appropriate point based upon the design criteria. Three points are chosen from the nondominated solutions of the obtained Pareto front based on two conflicting objective functions, that is, the normalized summation of angle errors and normalized summation of control effort. Obtained results elucidate the efficiency of the proposed controller in order to control a biped robot.
Poole, William; Leinonen, Kalle; Shmulevich, Ilya; Knijnenburg, Theo A; Bernard, Brady
2017-02-01
Cancer researchers have long recognized that somatic mutations are not uniformly distributed within genes. However, most approaches for identifying cancer mutations focus on either the entire-gene or single amino-acid level. We have bridged these two methodologies with a multiscale mutation clustering algorithm that identifies variable length mutation clusters in cancer genes. We ran our algorithm on 539 genes using the combined mutation data in 23 cancer types from The Cancer Genome Atlas (TCGA) and identified 1295 mutation clusters. The resulting mutation clusters cover a wide range of scales and often overlap with many kinds of protein features including structured domains, phosphorylation sites, and known single nucleotide variants. We statistically associated these multiscale clusters with gene expression and drug response data to illuminate the functional and clinical consequences of mutations in our clusters. Interestingly, we find multiple clusters within individual genes that have differential functional associations: these include PTEN, FUBP1, and CDH1. This methodology has potential implications in identifying protein regions for drug targets, understanding the biological underpinnings of cancer, and personalizing cancer treatments. Toward this end, we have made the mutation clusters and the clustering algorithm available to the public. Clusters and pathway associations can be interactively browsed at m2c.systemsbiology.net. The multiscale mutation clustering algorithm is available at https://github.com/IlyaLab/M2C.
An Affinity Propagation Clustering Algorithm for Mixed Numeric and Categorical Datasets
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Kang Zhang
2014-01-01
Full Text Available Clustering has been widely used in different fields of science, technology, social science, and so forth. In real world, numeric as well as categorical features are usually used to describe the data objects. Accordingly, many clustering methods can process datasets that are either numeric or categorical. Recently, algorithms that can handle the mixed data clustering problems have been developed. Affinity propagation (AP algorithm is an exemplar-based clustering method which has demonstrated good performance on a wide variety of datasets. However, it has limitations on processing mixed datasets. In this paper, we propose a novel similarity measure for mixed type datasets and an adaptive AP clustering algorithm is proposed to cluster the mixed datasets. Several real world datasets are studied to evaluate the performance of the proposed algorithm. Comparisons with other clustering algorithms demonstrate that the proposed method works well not only on mixed datasets but also on pure numeric and categorical datasets.
Han, Fei; Yang, Shanxiu; Guan, Jian
2015-01-01
In this paper, a hybrid approach based on clustering and Particle Swarm Optimisation (PSO) is proposed to perform gene selection and classification for microarray data. In the new method, firstly, genes are partitioned into a predetermined number of clusters by K-means method. Since the genes in each cluster have much redundancy, Max-Relevance Min-Redundancy (mRMR) strategy is used to reduce redundancy of the clustered genes. Then, PSO is used to perform further gene selection from the remaining clustered genes. Because of its better generalisation performance with much faster convergence rate than other learning algorithms for neural networks, Extreme Learning Machine (ELM) is chosen to evaluate candidate gene subsets selected by PSO and perform samples classification in this study. The proposed method selects less redundant genes as well as increases prediction accuracy and its efficiency and effectiveness are verified by extensive comparisons with other classical methods on three open microarray data.
Bio Inspired Swarm Algorithm for Tumor Detection in Digital Mammogram
Dheeba, J.; Selvi, Tamil
Microcalcification clusters in mammograms is the significant early sign of breast cancer. Individual clusters are difficult to detect and hence an automatic computer aided mechanism will help the radiologist in detecting the microcalcification clusters in an easy and efficient way. This paper presents a new classification approach for detection of microcalcification in digital mammogram using particle swarm optimization algorithm (PSO) based clustering technique. Fuzzy C-means clustering technique, well defined for clustering data sets are used in combination with the PSO. We adopt the particle swarm optimization to search the cluster center in the arbitrary data set automatically. PSO can search the best solution from the probability option of the Social-only model and Cognition-only model. This method is quite simple and valid, and it can avoid the minimum local value. The proposed classification approach is applied to a database of 322 dense mammographic images, originating from the MIAS database. Results shows that the proposed PSO-FCM approach gives better detection performance compared to conventional approaches.
Computing Adaptive Feature Weights with PSO to Improve Android Malware Detection
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Yanping Xu
2017-01-01
Full Text Available Android malware detection is a complex and crucial issue. In this paper, we propose a malware detection model using a support vector machine (SVM method based on feature weights that are computed by information gain (IG and particle swarm optimization (PSO algorithms. The IG weights are evaluated based on the relevance between features and class labels, and the PSO weights are adaptively calculated to result in the best fitness (the performance of the SVM classification model. Moreover, to overcome the defects of basic PSO, we propose a new adaptive inertia weight method called fitness-based and chaotic adaptive inertia weight-PSO (FCAIW-PSO that improves on basic PSO and is based on the fitness and a chaotic term. The goal is to assign suitable weights to the features to ensure the best Android malware detection performance. The results of experiments indicate that the IG weights and PSO weights both improve the performance of SVM and that the performance of the PSO weights is better than that of the IG weights.
APPECT: An Approximate Backbone-Based Clustering Algorithm for Tags
DEFF Research Database (Denmark)
Zong, Yu; Xu, Guandong; Jin, Pin
2011-01-01
Agglomerative Clustering on tagging data, which possess the inherent drawbacks, such as the sensitivity of initialization. In this paper, we instead make use of the approximate backbone of tag clustering results to find out better tag clusters. In particular, we propose an APProximate backbonE-based Clustering...
[Cluster ensemble algorithm based on dual neural gas applied to cancer gene expression profiles].
Zhang, Xiaodong; Chen, Hantao
2015-02-01
The microarray technology used in biological and medical research provides a new idea for the diagnosis and treatment of cancer. To find different types of cancer and to classify the cancer samples accurately, we propose a new cluster ensemble framework Dual Neural Gas Cluster Ensemble (DNGCE), which is based on neural gas algorithm, to discover the underlying structure of noisy cancer gene expression profiles. This framework DNGCE applies the neural gas algorithm to perform clustering not only on the sample dimension, but also on the attribute dimension. It also adopts the normalized cut algorithm to partition off the consensus matrix constructed from multiple clustering solutions. We obtained the final accurate results. Experiments on cancer gene expression profiles illustrated that the proposed approach could achieve good performance, as it outperforms the single clustering algorithms and most of the existing approaches in the process of clustering gene expression profiles.
Directory of Open Access Journals (Sweden)
Dmitri A. VIATTCHENIN
2014-12-01
Full Text Available The paper deals with the problem of automatic labeling output variables in Mamdani-type fuzzy rules generated by using heuristic algorithms of possibilistic clustering. The labeling problem in fuzzy clustering and basic concepts the heuristic approach to possibilistic clustering are considered in brief. Labeling consequents procedure is proposed. Experimental results are presented shortly and some preliminary conclusions are made.
A formal algorithm for verifying the validity of clustering results based on model checking.
Huang, Shaobin; Cheng, Yuan; Lang, Dapeng; Chi, Ronghua; Liu, Guofeng
2014-01-01
The limitations in general methods to evaluate clustering will remain difficult to overcome if verifying the clustering validity continues to be based on clustering results and evaluation index values. This study focuses on a clustering process to analyze crisp clustering validity. First, we define the properties that must be satisfied by valid clustering processes and model clustering processes based on program graphs and transition systems. We then recast the analysis of clustering validity as the problem of verifying whether the model of clustering processes satisfies the specified properties with model checking. That is, we try to build a bridge between clustering and model checking. Experiments on several datasets indicate the effectiveness and suitability of our algorithms. Compared with traditional evaluation indices, our formal method can not only indicate whether the clustering results are valid but, in the case the results are invalid, can also detect the objects that have led to the invalidity.
A formal algorithm for verifying the validity of clustering results based on model checking.
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Shaobin Huang
Full Text Available The limitations in general methods to evaluate clustering will remain difficult to overcome if verifying the clustering validity continues to be based on clustering results and evaluation index values. This study focuses on a clustering process to analyze crisp clustering validity. First, we define the properties that must be satisfied by valid clustering processes and model clustering processes based on program graphs and transition systems. We then recast the analysis of clustering validity as the problem of verifying whether the model of clustering processes satisfies the specified properties with model checking. That is, we try to build a bridge between clustering and model checking. Experiments on several datasets indicate the effectiveness and suitability of our algorithms. Compared with traditional evaluation indices, our formal method can not only indicate whether the clustering results are valid but, in the case the results are invalid, can also detect the objects that have led to the invalidity.
Kasim, Shahreen; Deris, Safaai; Othman, Razib M
2013-09-01
A drastic improvement in the analysis of gene expression has lead to new discoveries in bioinformatics research. In order to analyse the gene expression data, fuzzy clustering algorithms are widely used. However, the resulting analyses from these specific types of algorithms may lead to confusion in hypotheses with regard to the suggestion of dominant function for genes of interest. Besides that, the current fuzzy clustering algorithms do not conduct a thorough analysis of genes with low membership values. Therefore, we present a novel computational framework called the "multi-stage filtering-Clustering Functional Annotation" (msf-CluFA) for clustering gene expression data. The framework consists of four components: fuzzy c-means clustering (msf-CluFA-0), achieving dominant cluster (msf-CluFA-1), improving confidence level (msf-CluFA-2) and combination of msf-CluFA-0, msf-CluFA-1 and msf-CluFA-2 (msf-CluFA-3). By employing double filtering in msf-CluFA-1 and apriori algorithms in msf-CluFA-2, our new framework is capable of determining the dominant clusters and improving the confidence level of genes with lower membership values by means of which the unknown genes can be predicted. Copyright © 2013 Elsevier Ltd. All rights reserved.
Comparison and evaluation of network clustering algorithms applied to genetic interaction networks.
Hou, Lin; Wang, Lin; Berg, Arthur; Qian, Minping; Zhu, Yunping; Li, Fangting; Deng, Minghua
2012-01-01
The goal of network clustering algorithms detect dense clusters in a network, and provide a first step towards the understanding of large scale biological networks. With numerous recent advances in biotechnologies, large-scale genetic interactions are widely available, but there is a limited understanding of which clustering algorithms may be most effective. In order to address this problem, we conducted a systematic study to compare and evaluate six clustering algorithms in analyzing genetic interaction networks, and investigated influencing factors in choosing algorithms. The algorithms considered in this comparison include hierarchical clustering, topological overlap matrix, bi-clustering, Markov clustering, Bayesian discriminant analysis based community detection, and variational Bayes approach to modularity. Both experimentally identified and synthetically constructed networks were used in this comparison. The accuracy of the algorithms is measured by the Jaccard index in comparing predicted gene modules with benchmark gene sets. The results suggest that the choice differs according to the network topology and evaluation criteria. Hierarchical clustering showed to be best at predicting protein complexes; Bayesian discriminant analysis based community detection proved best under epistatic miniarray profile (EMAP) datasets; the variational Bayes approach to modularity was noticeably better than the other algorithms in the genome-scale networks.
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Nabil Mancer
2015-01-01
Full Text Available The integration of system compensation such as Series Compensator (SC into the transmission line makes the coordination of directional overcurrent in a practical power system important and complex. This article presents an efficient variant of Particle Swarm Optimization (PSO algorithm based on Time-Varying Acceleration Coefficients (PSO-TVAC for optimal coordination of directional overcurrent relays (DOCRs considering the integration of series compensation. Simulation results are compared to other methods to confirm the efficiency of the proposed variant PSO in solving the optimal coordination of directional overcurrent relay in the presence of series compensation.
Spectrophotometric determination of synthetic colorants using PSO-GA-ANN.
Benvidi, Ali; Abbasi, Saleheh; Gharaghani, Sajjad; Dehghan Tezerjani, Marzieh; Masoum, Saeed
2017-04-01
Four common food colorants, containing tartrazine, sunset yellow, ponceau 4R and methyl orange, are simultaneously quantified without prior chemical separation. In this study, an effective artificial neural network (ANN) method is designed for modeling multicomponent absorbance data with the presence of shifts or changes of peak shapes in spectroscopic analysis. Gradient descent methods such as Levenberg-Marquardt function are usually used to determine the parameters of ANN. However, these methods may provide inappropriate parameters. In this paper, we propose combination of genetic algorithms (GA) and partial swarm optimization (PSO) to optimize parameters of ANN, and then the algorithm is used to process the relationship between the absorbance data and the concentration of analytes. The hybrid algorithm has the benefits of both PSO and GA techniques. The performance of this algorithm is compared to the performance of PSO-ANN, PC-ANN and ANN based Levenberg-Marquardt function. The obtained results revealed that the designed model can accurately determine colorant concentrations in real and synthetic samples. According to the observations, it is clear that the proposed hybrid method is a powerful tool to estimate the concentration of food colorants with a high degree of overlap using nonlinear artificial neural network. Copyright © 2016 Elsevier Ltd. All rights reserved.
Genetic algorithm based two-mode clustering of metabolomics data
Hageman, J.A.; van den Berg, R.A.; Westerhuis, J.A.; van der Werf, M.J.; Smilde, A.K.
2008-01-01
Metabolomics and other omics tools are generally characterized by large data sets with many variables obtained under different environmental conditions. Clustering methods and more specifically two-mode clustering methods are excellent tools for analyzing this type of data. Two-mode clustering
A Parallel Particle Swarm Optimization Algorithm Accelerated by Asynchronous Evaluations
Venter, Gerhard; Sobieszczanski-Sobieski, Jaroslaw
2005-01-01
A parallel Particle Swarm Optimization (PSO) algorithm is presented. Particle swarm optimization is a fairly recent addition to the family of non-gradient based, probabilistic search algorithms that is based on a simplified social model and is closely tied to swarming theory. Although PSO algorithms present several attractive properties to the designer, they are plagued by high computational cost as measured by elapsed time. One approach to reduce the elapsed time is to make use of coarse-grained parallelization to evaluate the design points. Previous parallel PSO algorithms were mostly implemented in a synchronous manner, where all design points within a design iteration are evaluated before the next iteration is started. This approach leads to poor parallel speedup in cases where a heterogeneous parallel environment is used and/or where the analysis time depends on the design point being analyzed. This paper introduces an asynchronous parallel PSO algorithm that greatly improves the parallel e ciency. The asynchronous algorithm is benchmarked on a cluster assembled of Apple Macintosh G5 desktop computers, using the multi-disciplinary optimization of a typical transport aircraft wing as an example.
DEFF Research Database (Denmark)
2004-01-01
Within the framework of the PSO-Ensemble project (FU2101) a demo application has been created. The application use ECMWF ensemble forecasts. Two instances of the application are running; one for Nysted Offshore and one for the total production (except Horns Rev) in the Eltra area. The output is a...... is available via two password-protected web-pages hosted at IMM and is used daily by Elsam and E2....
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Shi Ying
2016-01-01
Full Text Available The fuzzy clustering algorithm is to classify the data or indicators with a greater degree of similarity based on the principle of the same type of individuals possessing a greater similarity, and different types of individuals possessing differences, establish clear category boundaries, form any shape of relationship clusters in the solving process, and input the research indicators at random, in order to accurately analyze the significance of the indicators in the algorithm. The evaluation value of the clustering analysis can be obtained by the establishment of the fuzzy factor set based on the membership analysis, and the evaluation result can be analyzed through reference to the evaluation indicators of the fuzzy clustering analysis. The “micro-lecture” English teaching mode can be estimated and the analysis indicators can be rationally established based on the fuzzy clustering analysis algorithm, with better algorithm applicability.
Implementation of spectral clustering on microarray data of carcinoma using k-means algorithm
Frisca, Bustamam, Alhadi; Siswantining, Titin
2017-03-01
Clustering is one of data analysis methods that aims to classify data which have similar characteristics in the same group. Spectral clustering is one of the most popular modern clustering algorithms. As an effective clustering technique, spectral clustering method emerged from the concepts of spectral graph theory. Spectral clustering method needs partitioning algorithm. There are some partitioning methods including PAM, SOM, Fuzzy c-means, and k-means. Based on the research that has been done by Capital and Choudhury in 2013, when using Euclidian distance k-means algorithm provide better accuracy than PAM algorithm. So in this paper we use k-means as our partition algorithm. The major advantage of spectral clustering is in reducing data dimension, especially in this case to reduce the dimension of large microarray dataset. Microarray data is a small-sized chip made of a glass plate containing thousands and even tens of thousands kinds of genes in the DNA fragments derived from doubling cDNA. Application of microarray data is widely used to detect cancer, for the example is carcinoma, in which cancer cells express the abnormalities in his genes. The purpose of this research is to classify the data that have high similarity in the same group and the data that have low similarity in the others. In this research, Carcinoma microarray data using 7457 genes. The result of partitioning using k-means algorithm is two clusters.
Implementation of Clustering Algorithms for real datasets in Medical Diagnostics using MATLAB
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B. Venkataramana
2017-03-01
Full Text Available As in the medical field, for one disease there require samples given by diagnosis. The samples will be analyzed by a doctor or a pharmacist. As the no. of patients increases their samples also increases, there require more time to analyze samples for deciding the stage of the disease. To analyze the sample every time requires a skilled person. The samples can be classified by applying them to clustering algorithms. Data clustering has been considered as the most important raw data analysis method used in data mining technology. Most of the clustering techniques proved their efficiency in many applications such as decision making systems, medical sciences, earth sciences etc. Partition based clustering is one of the main approach in clustering. There are various algorithms of data clustering, every algorithm has its own advantages and disadvantages. This work reports the results of classification performance of three such widely used algorithms namely K-means (KM, Fuzzy c-means and Fuzzy Possibilistic c-Means (FPCM clustering algorithms. To analyze these algorithms three known data sets from UCI machine learning repository are taken such as thyroid data, liver and wine. The efficiency of clustering output is compared with the classification performance, percentage of correctness. The experimental results show that K-means and FCM give same performance for liver data. And FCM and FPCM are giving same performance for thyroid and wine data. FPCM has more efficient classification performance in all the given data sets.
Sun, Liping; Luo, Yonglong; Ding, Xintao; Zhang, Ji
2014-01-01
An important component of a spatial clustering algorithm is the distance measure between sample points in object space. In this paper, the traditional Euclidean distance measure is replaced with innovative obstacle distance measure for spatial clustering under obstacle constraints. Firstly, we present a path searching algorithm to approximate the obstacle distance between two points for dealing with obstacles and facilitators. Taking obstacle distance as similarity metric, we subsequently propose the artificial immune clustering with obstacle entity (AICOE) algorithm for clustering spatial point data in the presence of obstacles and facilitators. Finally, the paper presents a comparative analysis of AICOE algorithm and the classical clustering algorithms. Our clustering model based on artificial immune system is also applied to the case of public facility location problem in order to establish the practical applicability of our approach. By using the clone selection principle and updating the cluster centers based on the elite antibodies, the AICOE algorithm is able to achieve the global optimum and better clustering effect.
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Liping Sun
2014-01-01
Full Text Available An important component of a spatial clustering algorithm is the distance measure between sample points in object space. In this paper, the traditional Euclidean distance measure is replaced with innovative obstacle distance measure for spatial clustering under obstacle constraints. Firstly, we present a path searching algorithm to approximate the obstacle distance between two points for dealing with obstacles and facilitators. Taking obstacle distance as similarity metric, we subsequently propose the artificial immune clustering with obstacle entity (AICOE algorithm for clustering spatial point data in the presence of obstacles and facilitators. Finally, the paper presents a comparative analysis of AICOE algorithm and the classical clustering algorithms. Our clustering model based on artificial immune system is also applied to the case of public facility location problem in order to establish the practical applicability of our approach. By using the clone selection principle and updating the cluster centers based on the elite antibodies, the AICOE algorithm is able to achieve the global optimum and better clustering effect.
A highly efficient multi-core algorithm for clustering extremely large datasets
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Kraus Johann M
2010-04-01
Full Text Available Abstract Background In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput technologies. This demand is likely to increase. Standard algorithms for analyzing data, such as cluster algorithms, need to be parallelized for fast processing. Unfortunately, most approaches for parallelizing algorithms largely rely on network communication protocols connecting and requiring multiple computers. One answer to this problem is to utilize the intrinsic capabilities in current multi-core hardware to distribute the tasks among the different cores of one computer. Results We introduce a multi-core parallelization of the k-means and k-modes cluster algorithms based on the design principles of transactional memory for clustering gene expression microarray type data and categorial SNP data. Our new shared memory parallel algorithms show to be highly efficient. We demonstrate their computational power and show their utility in cluster stability and sensitivity analysis employing repeated runs with slightly changed parameters. Computation speed of our Java based algorithm was increased by a factor of 10 for large data sets while preserving computational accuracy compared to single-core implementations and a recently published network based parallelization. Conclusions Most desktop computers and even notebooks provide at least dual-core processors. Our multi-core algorithms show that using modern algorithmic concepts, parallelization makes it possible to perform even such laborious tasks as cluster sensitivity and cluster number estimation on the laboratory computer.
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Simon Fong
2014-01-01
Full Text Available Traditional K-means clustering algorithms have the drawback of getting stuck at local optima that depend on the random values of initial centroids. Optimization algorithms have their advantages in guiding iterative computation to search for global optima while avoiding local optima. The algorithms help speed up the clustering process by converging into a global optimum early with multiple search agents in action. Inspired by nature, some contemporary optimization algorithms which include Ant, Bat, Cuckoo, Firefly, and Wolf search algorithms mimic the swarming behavior allowing them to cooperatively steer towards an optimal objective within a reasonable time. It is known that these so-called nature-inspired optimization algorithms have their own characteristics as well as pros and cons in different applications. When these algorithms are combined with K-means clustering mechanism for the sake of enhancing its clustering quality by avoiding local optima and finding global optima, the new hybrids are anticipated to produce unprecedented performance. In this paper, we report the results of our evaluation experiments on the integration of nature-inspired optimization methods into K-means algorithms. In addition to the standard evaluation metrics in evaluating clustering quality, the extended K-means algorithms that are empowered by nature-inspired optimization methods are applied on image segmentation as a case study of application scenario.
Block clustering based on difference of convex functions (DC) programming and DC algorithms.
Le, Hoai Minh; Le Thi, Hoai An; Dinh, Tao Pham; Huynh, Van Ngai
2013-10-01
We investigate difference of convex functions (DC) programming and the DC algorithm (DCA) to solve the block clustering problem in the continuous framework, which traditionally requires solving a hard combinatorial optimization problem. DC reformulation techniques and exact penalty in DC programming are developed to build an appropriate equivalent DC program of the block clustering problem. They lead to an elegant and explicit DCA scheme for the resulting DC program. Computational experiments show the robustness and efficiency of the proposed algorithm and its superiority over standard algorithms such as two-mode K-means, two-mode fuzzy clustering, and block classification EM.
Data Partitioning Technique to Enhance DBSCAN Clustering Algorithm
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Safaa O. Al-Mamory
2017-02-01
Full Text Available Among density- based clustering techniques ,DBSCAN is a typical one because it can detect clusters with widely different shapes and sizes, but it fails to find clusters with different densities and for that we propose a new technique to enhance the performance of DBSCAN on data with different densities ,the new solution contains two novel tech¬niques ,one is the separation (partitioning technique that separate data into sparse and dense regions, and the other is the sampling technique that produce data with only one density distribution. the experimental results on synthetic data show that the new tech¬nique has a clustering
Hierarchical trie packet classification algorithm based on expectation-maximization clustering.
Bi, Xia-An; Zhao, Junxia
2017-01-01
With the development of computer network bandwidth, packet classification algorithms which are able to deal with large-scale rule sets are in urgent need. Among the existing algorithms, researches on packet classification algorithms based on hierarchical trie have become an important packet classification research branch because of their widely practical use. Although hierarchical trie is beneficial to save large storage space, it has several shortcomings such as the existence of backtracking and empty nodes. This paper proposes a new packet classification algorithm, Hierarchical Trie Algorithm Based on Expectation-Maximization Clustering (HTEMC). Firstly, this paper uses the formalization method to deal with the packet classification problem by means of mapping the rules and data packets into a two-dimensional space. Secondly, this paper uses expectation-maximization algorithm to cluster the rules based on their aggregate characteristics, and thereby diversified clusters are formed. Thirdly, this paper proposes a hierarchical trie based on the results of expectation-maximization clustering. Finally, this paper respectively conducts simulation experiments and real-environment experiments to compare the performances of our algorithm with other typical algorithms, and analyzes the results of the experiments. The hierarchical trie structure in our algorithm not only adopts trie path compression to eliminate backtracking, but also solves the problem of low efficiency of trie updates, which greatly improves the performance of the algorithm.
Constructing a graph of connections in clustering algorithm of complex objects
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Татьяна Шатовская
2015-05-01
Full Text Available The article describes the results of modifying the algorithm Chameleon. Hierarchical multi-level algorithm consists of several phases: the construction of the count, coarsening, the separation and recovery. Each phase can be used various approaches and algorithms. The main aim of the work is to study the quality of the clustering of different sets of data using a set of algorithms combinations at different stages of the algorithm and improve the stage of construction by the optimization algorithm of k choice in the graph construction of k of nearest neighbors
Novel density-based and hierarchical density-based clustering algorithms for uncertain data.
Zhang, Xianchao; Liu, Han; Zhang, Xiaotong
2017-09-01
Uncertain data has posed a great challenge to traditional clustering algorithms. Recently, several algorithms have been proposed for clustering uncertain data, and among them density-based techniques seem promising for handling data uncertainty. However, some issues like losing uncertain information, high time complexity and nonadaptive threshold have not been addressed well in the previous density-based algorithm FDBSCAN and hierarchical density-based algorithm FOPTICS. In this paper, we firstly propose a novel density-based algorithm PDBSCAN, which improves the previous FDBSCAN from the following aspects: (1) it employs a more accurate method to compute the probability that the distance between two uncertain objects is less than or equal to a boundary value, instead of the sampling-based method in FDBSCAN; (2) it introduces new definitions of probability neighborhood, support degree, core object probability, direct reachability probability, thus reducing the complexity and solving the issue of nonadaptive threshold (for core object judgement) in FDBSCAN. Then, we modify the algorithm PDBSCAN to an improved version (PDBSCANi), by using a better cluster assignment strategy to ensure that every object will be assigned to the most appropriate cluster, thus solving the issue of nonadaptive threshold (for direct density reachability judgement) in FDBSCAN. Furthermore, as PDBSCAN and PDBSCANi have difficulties for clustering uncertain data with non-uniform cluster density, we propose a novel hierarchical density-based algorithm POPTICS by extending the definitions of PDBSCAN, adding new definitions of fuzzy core distance and fuzzy reachability distance, and employing a new clustering framework. POPTICS can reveal the cluster structures of the datasets with different local densities in different regions better than PDBSCAN and PDBSCANi, and it addresses the issues in FOPTICS. Experimental results demonstrate the superiority of our proposed algorithms over the existing
A scalable and practical one-pass clustering algorithm for recommender system
Khalid, Asra; Ghazanfar, Mustansar Ali; Azam, Awais; Alahmari, Saad Ali
2015-12-01
KMeans clustering-based recommendation algorithms have been proposed claiming to increase the scalability of recommender systems. One potential drawback of these algorithms is that they perform training offline and hence cannot accommodate the incremental updates with the arrival of new data, making them unsuitable for the dynamic environments. From this line of research, a new clustering algorithm called One-Pass is proposed, which is a simple, fast, and accurate. We show empirically that the proposed algorithm outperforms K-Means in terms of recommendation and training time while maintaining a good level of accuracy.
A density-based algorithm for discovering clusters in large spatial databases with noise
Energy Technology Data Exchange (ETDEWEB)
Ester, M.; Kriegel, H.P.; Sander, J.; Xu Xiaowei [Univ. of Munich (Germany)
1996-12-31
Clustering algorithms are attractive for the task of class identification in spatial databases. However, the application to large spatial databases rises the following requirements for clustering algorithms: minimal requirements of domain knowledge to determine the input parameters, discovery of clusters with arbitrary shape and good efficiency on large databases. The well-known clustering algorithms offer no solution to the combination of these requirements. In this paper, we present the new clustering algorithm DBSCAN relying on a density-based notion of clusters which is designed to discover clusters of arbitrary shape. DB SCAN requires only one input parameter and supports the user in determining an appropriate value for it. We performed an experimental evaluation of the effectiveness and efficiency of DBSCAN using synthetic data and real data of the SEQUOIA 2000 benchmark. The results of our experiments demonstrate that (1) DBSCAN is significantly more effective in discovering clusters of arbitrary shape than the well-known algorithm CLARANS, and that (2) DBSCAN outperforms CLARANS by a factor of more than 100 in terms of efficiency.
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Bohui Zhu
2013-01-01
Full Text Available This paper presents a novel maximum margin clustering method with immune evolution (IEMMC for automatic diagnosis of electrocardiogram (ECG arrhythmias. This diagnostic system consists of signal processing, feature extraction, and the IEMMC algorithm for clustering of ECG arrhythmias. First, raw ECG signal is processed by an adaptive ECG filter based on wavelet transforms, and waveform of the ECG signal is detected; then, features are extracted from ECG signal to cluster different types of arrhythmias by the IEMMC algorithm. Three types of performance evaluation indicators are used to assess the effect of the IEMMC method for ECG arrhythmias, such as sensitivity, specificity, and accuracy. Compared with K-means and iterSVR algorithms, the IEMMC algorithm reflects better performance not only in clustering result but also in terms of global search ability and convergence ability, which proves its effectiveness for the detection of ECG arrhythmias.
An Adaptive Sweep-Circle Spatial Clustering Algorithm Based on Gestalt
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Qingming Zhan
2017-08-01
Full Text Available An adaptive spatial clustering (ASC algorithm is proposed in this present study, which employs sweep-circle techniques and a dynamic threshold setting based on the Gestalt theory to detect spatial clusters. The proposed algorithm can automatically discover clusters in one pass, rather than through the modification of the initial model (for example, a minimal spanning tree, Delaunay triangulation, or Voronoi diagram. It can quickly identify arbitrarily-shaped clusters while adapting efficiently to non-homogeneous density characteristics of spatial data, without the need for prior knowledge or parameters. The proposed algorithm is also ideal for use in data streaming technology with dynamic characteristics flowing in the form of spatial clustering in large data sets.
Kernel Clustering with a Differential Harmony Search Algorithm for Scheme Classification
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Yu Feng
2017-01-01
Full Text Available This paper presents a kernel fuzzy clustering with a novel differential harmony search algorithm to coordinate with the diversion scheduling scheme classification. First, we employed a self-adaptive solution generation strategy and differential evolution-based population update strategy to improve the classical harmony search. Second, we applied the differential harmony search algorithm to the kernel fuzzy clustering to help the clustering method obtain better solutions. Finally, the combination of the kernel fuzzy clustering and the differential harmony search is applied for water diversion scheduling in East Lake. A comparison of the proposed method with other methods has been carried out. The results show that the kernel clustering with the differential harmony search algorithm has good performance to cooperate with the water diversion scheduling problems.
Optimization of self-interstitial clusters in 3C-SiC with genetic algorithm
Ko, Hyunseok; Kaczmarowski, Amy; Szlufarska, Izabela; Morgan, Dane
2017-08-01
Under irradiation, SiC develops damage commonly referred to as black spot defects, which are speculated to be self-interstitial atom clusters. To understand the evolution of these defect clusters and their impacts (e.g., through radiation induced swelling) on the performance of SiC in nuclear applications, it is important to identify the cluster composition, structure, and shape. In this work the genetic algorithm code StructOpt was utilized to identify groundstate cluster structures in 3C-SiC. The genetic algorithm was used to explore clusters of up to ∼30 interstitials of C-only, Si-only, and Si-C mixtures embedded in the SiC lattice. We performed the structure search using Hamiltonians from both density functional theory and empirical potentials. The thermodynamic stability of clusters was investigated in terms of their composition (with a focus on Si-only, C-only, and stoichiometric) and shape (spherical vs. planar), as a function of the cluster size (n). Our results suggest that large Si-only clusters are likely unstable, and clusters are predominantly C-only for n ≤ 10 and stoichiometric for n > 10. The results imply that there is an evolution of the shape of the most stable clusters, where small clusters are stable in more spherical geometries while larger clusters are stable in more planar configurations. We also provide an estimated energy vs. size relationship, E(n), for use in future analysis.
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Dong Yumin
2014-01-01
Full Text Available A quantum optimization scheme in network cluster server task scheduling is proposed. We explore and research the distribution theory of energy field in quantum mechanics; specially, we apply it to data clustering. We compare the quantum optimization method with genetic algorithm (GA, ant colony optimization (ACO, simulated annealing algorithm (SAA. At the same time, we prove its validity and rationality by analog simulation and experiment.
Application of k Means Clustering algorithm for prediction of Students Academic Performance
Oyelade, O. J,; Oladipupo, O. O.; Obagbuwa, I. C.
2010-01-01
The ability to monitor the progress of students’ academic performance is a critical issue to the academic community of higher learning. A system for analyzing students’ results based on cluster analysis and uses standard statistical algorithms to arrange their scores data according to the level of their performance is described. In this paper, we also implemented k-mean clustering algorithm for analyzing students’ result data. The model was combined with the deterministic model to analyze the...
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D. A. Viattchenin
2009-01-01
Full Text Available A method for constructing a subset of labeled objects which is used in a heuristic algorithm of possible clusterization with partial training is proposed in the paper. The method is based on data preprocessing by the heuristic algorithm of possible clusterization using a transitive closure of a fuzzy tolerance. Method efficiency is demonstrated by way of an illustrative example.
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Chunmeng Jiang
2017-01-01
Full Text Available In consideration of the difficulty in determining the parameters of underactuated autonomous underwater vehicles in multi-degree-of-freedom motion control, a hybrid method that combines particle swarm optimization (PSO with artificial fish school algorithm (AFSA is proposed in this paper. The optimization process of the PSO-AFSA method is firstly introduced. With the control simulation models in the horizontal plane and vertical plane, the PSO-AFSA method is elaborated when applied in control parameter optimization for an underactuated autonomous underwater vehicle. Both simulation tests and field trials were carried out to prove the efficiency of the PSO-AFSA method in underactuated autonomous underwater vehicle control parameter optimization. The optimized control parameters showed admirable control quality by enabling the underactuated autonomous underwater vehicle to reach the desired states with fast convergence.
Clustering Algorithm As A Planning Support Tool For Rural Electrification Optimization
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Ronaldo Pornillosa Parreno Jr
2015-08-01
Full Text Available Abstract In this study clustering algorithm was developed to optimize electrification plans by screening and grouping potential customers to be supplied with electricity. The algorithm provided adifferent approach in clustering problem which combines conceptual and distance-based clustering algorithmsto analyze potential clusters using spanning tree with the shortest possible edge weight and creating final cluster trees based on the test of inconsistency for the edges. The clustering criteria consists of commonly used distance measure with the addition of household information as basis for the ability to pay ATP value. The combination of these two parameters resulted to a more significant and realistic clusters since distance measure alone could not take the effect of the household characteristics in screening the most sensible groupings of households. In addition the implications of varying geographical features were incorporated in the algorithm by using routing index across the locations of the households. This new approach of connecting the households in an area was applied in an actual case study of one village or barangay that was not yet energized. The results of clustering algorithm generated cluster trees which could becomethetheoretical basis for power utilities to plan the initial network arrangement of electrification. Scenario analysis conducted on the two strategies of clustering the households provideddifferent alternatives for the optimization of the cost of electrification. Futhermorethe benefits associated with the two strategies formulated from the two scenarios was evaluated using benefit cost ratio BC to determine which is more economically advantageous. The results of the study showed that clustering algorithm proved to be effective in solving electrification optimization problem and serves its purpose as a planning support tool which can facilitate electrification in rural areas and achieve cost-effectiveness.
SURVEY ON CLUSTERING ALGORITHM AND SIMILARITY MEASURE FOR CATEGORICAL DATA
S. Anitha Elavarasi; J. Akilandeswari
2014-01-01
Learning is the process of generating useful information from a huge volume of data. Learning can be either supervised learning (e.g. classification) or unsupervised learning (e.g. Clustering) Clustering is the process of grouping a set of physical objects into classes of similar object. Objects in real world consist of both numerical and categorical data. Categorical data are not analyzed as numerical data because of the absence of inherit ordering. This paper describes about ten different c...
ALGORITHM FOR CONSTRUCTION OF REGIONAL AGRARIAN-INDUSTRIAL CLUSTERS IN THE MODERNIZED ECONOMY
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I. S. Vazhenina
2010-03-01
Full Text Available Necessity and timeliness of regional agrarian-industrial cluster generation has been substantiated in the present paper. A program algorithm concerned with regional agrarian-industrial cluster generation has been developed. Possible results of the given programme implementation have been demonstrated.
An Adaptive Spectral Clustering Algorithm Based on the Importance of Shared Nearest Neighbors
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Xiaoqi He
2015-05-01
Full Text Available The construction of a similarity matrix is one significant step for the spectral clustering algorithm; while the Gaussian kernel function is one of the most common measures for constructing the similarity matrix. However, with a fixed scaling parameter, the similarity between two data points is not adaptive and appropriate for multi-scale datasets. In this paper, through quantitating the value of the importance for each vertex of the similarity graph, the Gaussian kernel function is scaled, and an adaptive Gaussian kernel similarity measure is proposed. Then, an adaptive spectral clustering algorithm is gotten based on the importance of shared nearest neighbors. The idea is that the greater the importance of the shared neighbors between two vertexes, the more possible it is that these two vertexes belong to the same cluster; and the importance value of the shared neighbors is obtained with an iterative method, which considers both the local structural information and the distance similarity information, so as to improve the algorithm’s performance. Experimental results on different datasets show that our spectral clustering algorithm outperforms the other spectral clustering algorithms, such as the self-tuning spectral clustering and the adaptive spectral clustering based on shared nearest neighbors in clustering accuracy on most datasets.
Sales Growth Rate Forecasting Using Improved PSO and SVM
Directory of Open Access Journals (Sweden)
Xibin Wang
2014-01-01
Full Text Available Accurate forecast of the sales growth rate plays a decisive role in determining the amount of advertising investment. In this study, we present a preclassification and later regression based method optimized by improved particle swarm optimization (IPSO for sales growth rate forecasting. We use support vector machine (SVM as a classification model. The nonlinear relationship in sales growth rate forecasting is efficiently represented by SVM, while IPSO is optimizing the training parameters of SVM. IPSO addresses issues of traditional PSO, such as relapsing into local optimum, slow convergence speed, and low convergence precision in the later evolution. We performed two experiments; firstly, three classic benchmark functions are used to verify the validity of the IPSO algorithm against PSO. Having shown IPSO outperform PSO in convergence speed, precision, and escaping local optima, in our second experiment, we apply IPSO to the proposed model. The sales growth rate forecasting cases are used to testify the forecasting performance of proposed model. According to the requirements and industry knowledge, the sample data was first classified to obtain types of the test samples. Next, the values of the test samples were forecast using the SVM regression algorithm. The experimental results demonstrate that the proposed model has good forecasting performance.
ExtMiner: Combining multiple ranking and clustering algorithms for structured document retrieval
Nurminen, Miika; Honkaranta, Anne; Kärkkäinen, Tommi
2005-01-01
This paper introduces ExtMiner, a platform and potential tool for information management in SMEs (small & medium-size enterprise), or for organizational workgroups. ExtMiner supports interactive and iterative clustering of documents. It provides users with a visual cluster and list views at the same time, supporting iterative search process. ExtMiner may also be applied as a platform for research on retrieval fusion, since it combines search, clustering and visualization algorithms. ExtMiner ...
Application of genetic algorithms to hydrogenated silicon clusters
Indian Academy of Sciences (India)
Hydrogenated silicon; genetic algorithms; differential evolution; ab initio calculation. ... with the earlier work conducted using the simulated annealing technique. ... Department of Metallurgical and Materials Engineering, Indian Institute of ...
DEFF Research Database (Denmark)
Müller, Emmanuel; Assent, Ira; Günnemann, Stephan
2011-01-01
comparative studies on the advantages and disadvantages of the different algorithms exist. Part of the underlying problem is the lack of available open source implementations that could be used by researchers to understand, compare, and extend subspace and projected clustering algorithms. In this work, we...
Energy Technology Data Exchange (ETDEWEB)
Wu, Xia, E-mail: xiawu@mail.nankai.edu.cn; Wu, Genhua
2014-08-31
Highlights: • A high efficient method for optimization of atomic clusters is developed. • Its performance is studied by optimizing Lennard-Jones clusters and Ag clusters. • The method is proved to be quite efficient. • A new Ag{sub 61} cluster with stacking-fault face-centered cubic motif is found. - Abstract: Geometrical optimization of atomic clusters is performed by a development of adaptive immune optimization algorithm (AIOA) with dynamic lattice searching (DLS) operation (AIOA-DLS method). By a cycle of construction and searching of the dynamic lattice (DL), DLS algorithm rapidly makes the clusters more regular and greatly reduces the potential energy. DLS can thus be used as an operation acting on the new individuals after mutation operation in AIOA to improve the performance of the AIOA. The AIOA-DLS method combines the merit of evolutionary algorithm and idea of dynamic lattice. The performance of the proposed method is investigated in the optimization of Lennard-Jones clusters within 250 atoms and silver clusters described by many-body Gupta potential within 150 atoms. Results reported in the literature are reproduced, and the motif of Ag{sub 61} cluster is found to be stacking-fault face-centered cubic, whose energy is lower than that of previously obtained icosahedron.
Directory of Open Access Journals (Sweden)
Arvind Sharma
2016-01-01
Full Text Available There are many techniques available in the field of data mining and its subfield spatial data mining is to understand relationships between data objects. Data objects related with spatial features are called spatial databases. These relationships can be used for prediction and trend detection between spatial and nonspatial objects for social and scientific reasons. A huge data set may be collected from different sources as satellite images, X-rays, medical images, traffic cameras, and GIS system. To handle this large amount of data and set relationship between them in a certain manner with certain results is our primary purpose of this paper. This paper gives a complete process to understand how spatial data is different from other kinds of data sets and how it is refined to apply to get useful results and set trends to predict geographic information system and spatial data mining process. In this paper a new improved algorithm for clustering is designed because role of clustering is very indispensable in spatial data mining process. Clustering methods are useful in various fields of human life such as GIS (Geographic Information System, GPS (Global Positioning System, weather forecasting, air traffic controller, water treatment, area selection, cost estimation, planning of rural and urban areas, remote sensing, and VLSI designing. This paper presents study of various clustering methods and algorithms and an improved algorithm of DBSCAN as IDBSCAN (Improved Density Based Spatial Clustering of Application of Noise. The algorithm is designed by addition of some important attributes which are responsible for generation of better clusters from existing data sets in comparison of other methods.
Parallel-tempering cluster algorithm for computer simulations of critical phenomena.
Bittner, Elmar; Janke, Wolfhard
2011-09-01
In finite-size scaling analyses of Monte Carlo simulations of second-order phase transitions one often needs an extended temperature range around the critical point. By combining the parallel-tempering algorithm with cluster updates and an adaptive routine to find the temperature window of interest, we introduce a flexible and powerful method for systematic investigations of critical phenomena. As a result, we gain one to two orders of magnitude in the performance for two- and three-dimensional Ising models in comparison with the recently proposed Wang-Landau recursion for cluster algorithms based on the multibondic algorithm, which is already a great improvement over the standard multicanonical variant.
Graph-based clustering and data visualization algorithms
Vathy-Fogarassy, Ágnes
2013-01-01
This work presents a data visualization technique that combines graph-based topology representation and dimensionality reduction methods to visualize the intrinsic data structure in a low-dimensional vector space. The application of graphs in clustering and visualization has several advantages. A graph of important edges (where edges characterize relations and weights represent similarities or distances) provides a compact representation of the entire complex data set. This text describes clustering and visualization methods that are able to utilize information hidden in these graphs, based on
Reconstruction of a digital core containing clay minerals based on a clustering algorithm.
He, Yanlong; Pu, Chunsheng; Jing, Cheng; Gu, Xiaoyu; Chen, Qingdong; Liu, Hongzhi; Khan, Nasir; Dong, Qiaoling
2017-10-01
It is difficult to obtain a core sample and information for digital core reconstruction of mature sandstone reservoirs around the world, especially for an unconsolidated sandstone reservoir. Meanwhile, reconstruction and division of clay minerals play a vital role in the reconstruction of the digital cores, although the two-dimensional data-based reconstruction methods are specifically applicable as the microstructure reservoir simulation methods for the sandstone reservoir. However, reconstruction of clay minerals is still challenging from a research viewpoint for the better reconstruction of various clay minerals in the digital cores. In the present work, the content of clay minerals was considered on the basis of two-dimensional information about the reservoir. After application of the hybrid method, and compared with the model reconstructed by the process-based method, the digital core containing clay clusters without the labels of the clusters' number, size, and texture were the output. The statistics and geometry of the reconstruction model were similar to the reference model. In addition, the Hoshen-Kopelman algorithm was used to label various connected unclassified clay clusters in the initial model and then the number and size of clay clusters were recorded. At the same time, the K-means clustering algorithm was applied to divide the labeled, large connecting clusters into smaller clusters on the basis of difference in the clusters' characteristics. According to the clay minerals' characteristics, such as types, textures, and distributions, the digital core containing clay minerals was reconstructed by means of the clustering algorithm and the clay clusters' structure judgment. The distributions and textures of the clay minerals of the digital core were reasonable. The clustering algorithm improved the digital core reconstruction and provided an alternative method for the simulation of different clay minerals in the digital cores.
Reconstruction of a digital core containing clay minerals based on a clustering algorithm
He, Yanlong; Pu, Chunsheng; Jing, Cheng; Gu, Xiaoyu; Chen, Qingdong; Liu, Hongzhi; Khan, Nasir; Dong, Qiaoling
2017-10-01
It is difficult to obtain a core sample and information for digital core reconstruction of mature sandstone reservoirs around the world, especially for an unconsolidated sandstone reservoir. Meanwhile, reconstruction and division of clay minerals play a vital role in the reconstruction of the digital cores, although the two-dimensional data-based reconstruction methods are specifically applicable as the microstructure reservoir simulation methods for the sandstone reservoir. However, reconstruction of clay minerals is still challenging from a research viewpoint for the better reconstruction of various clay minerals in the digital cores. In the present work, the content of clay minerals was considered on the basis of two-dimensional information about the reservoir. After application of the hybrid method, and compared with the model reconstructed by the process-based method, the digital core containing clay clusters without the labels of the clusters' number, size, and texture were the output. The statistics and geometry of the reconstruction model were similar to the reference model. In addition, the Hoshen-Kopelman algorithm was used to label various connected unclassified clay clusters in the initial model and then the number and size of clay clusters were recorded. At the same time, the K -means clustering algorithm was applied to divide the labeled, large connecting clusters into smaller clusters on the basis of difference in the clusters' characteristics. According to the clay minerals' characteristics, such as types, textures, and distributions, the digital core containing clay minerals was reconstructed by means of the clustering algorithm and the clay clusters' structure judgment. The distributions and textures of the clay minerals of the digital core were reasonable. The clustering algorithm improved the digital core reconstruction and provided an alternative method for the simulation of different clay minerals in the digital cores.
Efficient Grid-based Clustering Algorithm with Leaping Search and Merge Neighbors Method
Liu, Feng; Wen, Peng; Zhu, Erzhou
2017-09-01
The increasing data size makes the research of clustering algorithm still an important topic in data mining. As one of the fastest algorithms, the grid clustering algorithm now still suffers from low precision problem. And the efficiency of the algorithm also needed improvement. In order to cope with these problems, this paper proposes an efficient grid-based clustering algorithm by using leaping search and Merge Neighborhood (LSMN). In the algorithm, the LSMN first divides the data space into a finite number of grids and determines the validity of the grid according to the threshold. Then, leaping search mechanism is used to find valid grids of the grid by retrieving all the odd columns and odd rows. Finally, if the number of valid grids is greater than the invalid grid, the invalid grids are merged together. In the algorithm, the time cost is reduced and the accuracy is improved by leaping search and re-judgment of the invalid grid mechanisms respectively. The experimental results have shown that the proposed algorithm exhibits relatively better performance when compared with some popularly used algorithms.
On the Accuracy and Parallelism of GPGPU-Powered Incremental Clustering Algorithms.
Chen, Chunlei; He, Li; Zhang, Huixiang; Zheng, Hao; Wang, Lei
2017-01-01
Incremental clustering algorithms play a vital role in various applications such as massive data analysis and real-time data processing. Typical application scenarios of incremental clustering raise high demand on computing power of the hardware platform. Parallel computing is a common solution to meet this demand. Moreover, General Purpose Graphic Processing Unit (GPGPU) is a promising parallel computing device. Nevertheless, the incremental clustering algorithm is facing a dilemma between clustering accuracy and parallelism when they are powered by GPGPU. We formally analyzed the cause of this dilemma. First, we formalized concepts relevant to incremental clustering like evolving granularity. Second, we formally proved two theorems. The first theorem proves the relation between clustering accuracy and evolving granularity. Additionally, this theorem analyzes the upper and lower bounds of different-to-same mis-affiliation. Fewer occurrences of such mis-affiliation mean higher accuracy. The second theorem reveals the relation between parallelism and evolving granularity. Smaller work-depth means superior parallelism. Through the proofs, we conclude that accuracy of an incremental clustering algorithm is negatively related to evolving granularity while parallelism is positively related to the granularity. Thus the contradictory relations cause the dilemma. Finally, we validated the relations through a demo algorithm. Experiment results verified theoretical conclusions.
Lin, Nan; Jiang, Junhai; Guo, Shicheng; Xiong, Momiao
2015-01-01
Due to the advancement in sensor technology, the growing large medical image data have the ability to visualize the anatomical changes in biological tissues. As a consequence, the medical images have the potential to enhance the diagnosis of disease, the prediction of clinical outcomes and the characterization of disease progression. But in the meantime, the growing data dimensions pose great methodological and computational challenges for the representation and selection of features in image cluster analysis. To address these challenges, we first extend the functional principal component analysis (FPCA) from one dimension to two dimensions to fully capture the space variation of image the signals. The image signals contain a large number of redundant features which provide no additional information for clustering analysis. The widely used methods for removing the irrelevant features are sparse clustering algorithms using a lasso-type penalty to select the features. However, the accuracy of clustering using a lasso-type penalty depends on the selection of the penalty parameters and the threshold value. In practice, they are difficult to determine. Recently, randomized algorithms have received a great deal of attentions in big data analysis. This paper presents a randomized algorithm for accurate feature selection in image clustering analysis. The proposed method is applied to both the liver and kidney cancer histology image data from the TCGA database. The results demonstrate that the randomized feature selection method coupled with functional principal component analysis substantially outperforms the current sparse clustering algorithms in image cluster analysis. PMID:26196383
Directory of Open Access Journals (Sweden)
Nan Lin
Full Text Available Due to the advancement in sensor technology, the growing large medical image data have the ability to visualize the anatomical changes in biological tissues. As a consequence, the medical images have the potential to enhance the diagnosis of disease, the prediction of clinical outcomes and the characterization of disease progression. But in the meantime, the growing data dimensions pose great methodological and computational challenges for the representation and selection of features in image cluster analysis. To address these challenges, we first extend the functional principal component analysis (FPCA from one dimension to two dimensions to fully capture the space variation of image the signals. The image signals contain a large number of redundant features which provide no additional information for clustering analysis. The widely used methods for removing the irrelevant features are sparse clustering algorithms using a lasso-type penalty to select the features. However, the accuracy of clustering using a lasso-type penalty depends on the selection of the penalty parameters and the threshold value. In practice, they are difficult to determine. Recently, randomized algorithms have received a great deal of attentions in big data analysis. This paper presents a randomized algorithm for accurate feature selection in image clustering analysis. The proposed method is applied to both the liver and kidney cancer histology image data from the TCGA database. The results demonstrate that the randomized feature selection method coupled with functional principal component analysis substantially outperforms the current sparse clustering algorithms in image cluster analysis.
Comparison of Clustering Algorithms for the Identification of Topics on Twitter
Directory of Open Access Journals (Sweden)
Marjori N. M. Klinczak
2016-05-01
Full Text Available Topic Identification in Social Networks has become an important task when dealing with event detection, particularly when global communities are affected. In order to attack this problem, text processing techniques and machine learning algorithms have been extensively used. In this paper we compare four clustering algorithms – k-means, k-medoids, DBSCAN and NMF (Non-negative Matrix Factorization – in order to detect topics related to textual messages obtained from Twitter. The algorithms were applied to a database initially composed by tweets having hashtags related to the recent Nepal earthquake as initial context. Obtained results suggest that the NMF clustering algorithm presents superior results, providing simpler clusters that are also easier to interpret.
Energy Technology Data Exchange (ETDEWEB)
Uy, D.L.
1996-02-01
An algorithm for detection and identification of image clusters or {open_quotes}blobs{close_quotes} based on color information for an autonomous mobile robot is developed. The input image data are first processed using a crisp color fuszzyfier, a binary smoothing filter, and a median filter. The processed image data is then inputed to the image clusters detection and identification program. The program employed the concept of {open_quotes}elastic rectangle{close_quotes}that stretches in such a way that the whole blob is finally enclosed in a rectangle. A C-program is develop to test the algorithm. The algorithm is tested only on image data of 8x8 sizes with different number of blobs in them. The algorithm works very in detecting and identifying image clusters.
Multidistribution Center Location Based on Real-Parameter Quantum Evolutionary Clustering Algorithm
Directory of Open Access Journals (Sweden)
Huaixiao Wang
2014-01-01
Full Text Available To determine the multidistribution center location and the distribution scope of the distribution center with high efficiency, the real-parameter quantum-inspired evolutionary clustering algorithm (RQECA is proposed. RQECA is applied to choose multidistribution center location on the basis of the conventional fuzzy C-means clustering algorithm (FCM. The combination of the real-parameter quantum-inspired evolutionary algorithm (RQIEA and FCM can overcome the local search defect of FCM and make the optimization result independent of the choice of initial values. The comparison of FCM, clustering based on simulated annealing genetic algorithm (CSAGA, and RQECA indicates that RQECA has the same good convergence as CSAGA, but the search efficiency of RQECA is better than that of CSAGA. Therefore, RQECA is more efficient to solve the multidistribution center location problem.
A PSO-based approach to optimize the triangular membership functions in a fuzzy logic controller
Maniscalco, Vincenzo; Lombardo, Francesco
2017-11-01
In this paper a Particle Swarm Optimization (PSO) algorithm is considered in order to optimize the triangular Membership Functions (MF) in a Fuzzy Logic Controller (FLC). PSO algorithm belongs to the class of Swarm Intelligence (SI) techniques and is considered an efficient heuristic technique for optimization problem in a continuous and multidimen-sional search spaces. Performance of a FLC depends on the fuzzy partition of each input/output space considered and the PSO algorithm can be used to obtain the optimal or near optimal parameters of the triangular membership functions in order to achieve the best results in the defuzzification process. Simulation results obtained by this approach to tune the triangular membership functions of a FLC for an application concerning the optimization of the energy consumption in Industrial Wireless Sensor Networks (IWSN) are reported.
Performance quantification of clustering algorithms for false positive removal in fMRI by ROC curves
Directory of Open Access Journals (Sweden)
André Salles Cunha Peres
Full Text Available Abstract Introduction Functional magnetic resonance imaging (fMRI is a non-invasive technique that allows the detection of specific cerebral functions in humans based on hemodynamic changes. The contrast changes are about 5%, making visual inspection impossible. Thus, statistic strategies are applied to infer which brain region is engaged in a task. However, the traditional methods like general linear model and cross-correlation utilize voxel-wise calculation, introducing a lot of false-positive data. So, in this work we tested post-processing cluster algorithms to diminish the false-positives. Methods In this study, three clustering algorithms (the hierarchical cluster, k-means and self-organizing maps were tested and compared for false-positive removal in the post-processing of cross-correlation analyses. Results Our results showed that the hierarchical cluster presented the best performance to remove the false positives in fMRI, being 2.3 times more accurate than k-means, and 1.9 times more accurate than self-organizing maps. Conclusion The hierarchical cluster presented the best performance in false-positive removal because it uses the inconsistency coefficient threshold, while k-means and self-organizing maps utilize a priori cluster number (centroids and neurons number; thus, the hierarchical cluster avoids clustering scattered voxels, as the inconsistency coefficient threshold allows only the voxels to be clustered that are at a minimum distance to some cluster.
Adopting Hierarchial Cluster Analysis to Improve The Performance of K-mean Algorithm
Directory of Open Access Journals (Sweden)
B. Ghahraman
2014-11-01
Full Text Available Due to inadequate flood data it is not always possible to fit a frequency analysis to at-site stations. Reliable results are not always guaranteed by a single clustering algorithm, so a combination of methods may be used. In this research, we considered three clustering algorithms: single linkge, complete linkage and Ward (as hierarchial clustering methods, and K-mean (as partitional clustering analysis. Hybrid cluster analysis was tested for up-to-dated of floods data in 68 hydrometric stations in East and NE of Iran. Four cluster validity indices were used to find the optimum number of clusters. Based on the Cophenetic coefficient and average Silhouette width, single linkge, and complete linkage methods were performed well, yet they produced non-consistent clusters (one large and numerous small clusters which are not amenable for flood frequency analysis. It was shown that hybridization was efficient to form homogeneous regions, however, the usefulness was dependent to the number of classes. Heterogeneity measure of Hosking was negative, due to inter-correlation of floods in the clusters. The hybrid of Ward and K-mean was shown to be the best combination for the region under study. Four homogeneous regions were delineated.
A fast density-based clustering algorithm for real-time Internet of Things stream.
Amini, Amineh; Saboohi, Hadi; Wah, Teh Ying; Herawan, Tutut
2014-01-01
Data streams are continuously generated over time from Internet of Things (IoT) devices. The faster all of this data is analyzed, its hidden trends and patterns discovered, and new strategies created, the faster action can be taken, creating greater value for organizations. Density-based method is a prominent class in clustering data streams. It has the ability to detect arbitrary shape clusters, to handle outlier, and it does not need the number of clusters in advance. Therefore, density-based clustering algorithm is a proper choice for clustering IoT streams. Recently, several density-based algorithms have been proposed for clustering data streams. However, density-based clustering in limited time is still a challenging issue. In this paper, we propose a density-based clustering algorithm for IoT streams. The method has fast processing time to be applicable in real-time application of IoT devices. Experimental results show that the proposed approach obtains high quality results with low computation time on real and synthetic datasets.
A Fast Density-Based Clustering Algorithm for Real-Time Internet of Things Stream
Directory of Open Access Journals (Sweden)
Amineh Amini
2014-01-01
Full Text Available Data streams are continuously generated over time from Internet of Things (IoT devices. The faster all of this data is analyzed, its hidden trends and patterns discovered, and new strategies created, the faster action can be taken, creating greater value for organizations. Density-based method is a prominent class in clustering data streams. It has the ability to detect arbitrary shape clusters, to handle outlier, and it does not need the number of clusters in advance. Therefore, density-based clustering algorithm is a proper choice for clustering IoT streams. Recently, several density-based algorithms have been proposed for clustering data streams. However, density-based clustering in limited time is still a challenging issue. In this paper, we propose a density-based clustering algorithm for IoT streams. The method has fast processing time to be applicable in real-time application of IoT devices. Experimental results show that the proposed approach obtains high quality results with low computation time on real and synthetic datasets.
Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
DEFF Research Database (Denmark)
Grotkjær, Thomas; Winther, Ole; Regenberg, Birgitte
2006-01-01
analysis by collecting re-occurring clustering patterns in a co-occurrence matrix. The results show that consensus clustering obtained from clustering multiple times with Variational Bayes Mixtures of Gaussians or K-means significantly reduces the classification error rate for a simulated dataset...... methods. It is shown that the method is robust and gives low classification error rates for a realistic, simulated dataset. The algorithm is also demonstrated for real datasets. It is shown that more biological meaningful transcriptional patterns can be found without conservative statistical or fold......-change exclusion of data. Availability: Matlab source code for the clustering algorithm ClusterLustre, and the simulated dataset for testing are available upon request from T.G. and O.W. Contact: tg@biocentrum.dtu.dk and owi@imm.dtu.dk Supplementary information: http://www.cmb.dtu.dk/...
Fuzzy cluster means algorithm for the diagnosis of confusable disease
African Journals Online (AJOL)
Data on alcoholic liver disease were collected and used in the development of the knowledge base. Fuzzy logic and FCM algorithm propelled the inference engine. The system was implemented with CLIPS expert system shell and Java as the front end platform while Microsoft Access was used as the database application.
Application of genetic algorithms to hydrogenated silicon clusters
Indian Academy of Sciences (India)
Unknown
Genetic algorithms, as indicated before, require map- ping of all the system variables in a binary format. In case of a large number of variables, this leads to proce- ssing of large arrays containing 1s and 0s, which often substantially retards the computational speed. In addition, binary arithmetic has an implicit disadvantage ...
Spectrum aware fuzzy clustering algorithm for cognative radio ...
African Journals Online (AJOL)
This paper proposes a SAFCA for a self-organized CH selection within a CRSN. The algorithm caters CR and WSN constraints by exploiting the dynamic spectrum access and fuzzy inference technique for an energy efficient CRSN. It utilizes channel availability and fuzzy parameters of residual energy, communication cost ...
Clustering Batik Images using Fuzzy C-Means Algorithm Based on Log-Average Luminance
Directory of Open Access Journals (Sweden)
Ahmad Sanmorino
2012-06-01
Full Text Available Batik is a fabric or clothes that are made with a special staining technique called wax-resist dyeing and is one of the cultural heritage which has high artistic value. In order to improve the efficiency and give better semantic to the image, some researchers apply clustering algorithm for managing images before they can be retrieved. Image clustering is a process of grouping images based on their similarity. In this paper we attempt to provide an alternative method of grouping batik image using fuzzy c-means (FCM algorithm based on log-average luminance of the batik. FCM clustering algorithm is an algorithm that works using fuzzy models that allow all data from all cluster members are formed with different degrees of membership between 0 and 1. Log-average luminance (LAL is the average value of the lighting in an image. We can compare different image lighting from one image to another using LAL. From the experiments that have been made, it can be concluded that fuzzy c-means algorithm can be used for batik image clustering based on log-average luminance of each image possessed.
Jafari, Mohieddin; Mirzaie, Mehdi; Sadeghi, Mehdi
2015-10-05
In the field of network science, exploring principal and crucial modules or communities is critical in the deduction of relationships and organization of complex networks. This approach expands an arena, and thus allows further study of biological functions in the field of network biology. As the clustering algorithms that are currently employed in finding modules have innate uncertainties, external and internal validations are necessary. Sequence and network structure alignment, has been used to define the Interlog Protein Network (IPN). This network is an evolutionarily conserved network with communal nodes and less false-positive links. In the current study, the IPN is employed as an evolution-based benchmark in the validation of the module finding methods. The clustering results of five algorithms; Markov Clustering (MCL), Restricted Neighborhood Search Clustering (RNSC), Cartographic Representation (CR), Laplacian Dynamics (LD) and Genetic Algorithm; to find communities in Protein-Protein Interaction networks (GAPPI) are assessed by IPN in four distinct Protein-Protein Interaction Networks (PPINs). The MCL shows a more accurate algorithm based on this evolutionary benchmarking approach. Also, the biological relevance of proteins in the IPN modules generated by MCL is compatible with biological standard databases such as Gene Ontology, KEGG and Reactome. In this study, the IPN shows its potential for validation of clustering algorithms due to its biological logic and straightforward implementation.
A New-Fangled FES-k-Means Clustering Algorithm for Disease Discovery and Visual Analytics
Directory of Open Access Journals (Sweden)
Tonny J. Oyana
2010-01-01
Full Text Available The central purpose of this study is to further evaluate the quality of the performance of a new algorithm. The study provides additional evidence on this algorithm that was designed to increase the overall efficiency of the original k-means clustering technique—the Fast, Efficient, and Scalable k-means algorithm (FES-k-means. The FES-k-means algorithm uses a hybrid approach that comprises the k-d tree data structure that enhances the nearest neighbor query, the original k-means algorithm, and an adaptation rate proposed by Mashor. This algorithm was tested using two real datasets and one synthetic dataset. It was employed twice on all three datasets: once on data trained by the innovative MIL-SOM method and then on the actual untrained data in order to evaluate its competence. This two-step approach of data training prior to clustering provides a solid foundation for knowledge discovery and data mining, otherwise unclaimed by clustering methods alone. The benefits of this method are that it produces clusters similar to the original k-means method at a much faster rate as shown by runtime comparison data; and it provides efficient analysis of large geospatial data with implications for disease mechanism discovery. From a disease mechanism discovery perspective, it is hypothesized that the linear-like pattern of elevated blood lead levels discovered in the city of Chicago may be spatially linked to the city's water service lines.
Proposed Fuzzy-NN Algorithm with LoRaCommunication Protocol for Clustered Irrigation Systems
Directory of Open Access Journals (Sweden)
Sotirios Kontogiannis
2017-11-01
Full Text Available Modern irrigation systems utilize sensors and actuators, interconnected together as a single entity. In such entities, A.I. algorithms are implemented, which are responsible for the irrigation process. In this paper, the authors present an irrigation Open Watering System (OWS architecture that spatially clusters the irrigation process into autonomous irrigation sections. Authors’ OWS implementation includes a Neuro-Fuzzy decision algorithm called FITRA, which originates from the Greek word for seed. In this paper, the FITRA algorithm is described in detail, as are experimentation results that indicate significant water conservations from the use of the FITRA algorithm. Furthermore, the authors propose a new communication protocol over LoRa radio as an alternative low-energy and long-range OWS clusters communication mechanism. The experimental scenarios confirm that the FITRA algorithm provides more efficient irrigation on clustered areas than existing non-clustered, time scheduled or threshold adaptive algorithms. This is due to the FITRA algorithm’s frequent monitoring of environmental conditions, fuzzy and neural network adaptation as well as adherence to past irrigation preferences.
Hybrid Swarm Intelligence Energy Efficient Clustered Routing Algorithm for Wireless Sensor Networks
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Rajeev Kumar
2016-01-01
Full Text Available Currently, wireless sensor networks (WSNs are used in many applications, namely, environment monitoring, disaster management, industrial automation, and medical electronics. Sensor nodes carry many limitations like low battery life, small memory space, and limited computing capability. To create a wireless sensor network more energy efficient, swarm intelligence technique has been applied to resolve many optimization issues in WSNs. In many existing clustering techniques an artificial bee colony (ABC algorithm is utilized to collect information from the field periodically. Nevertheless, in the event based applications, an ant colony optimization (ACO is a good solution to enhance the network lifespan. In this paper, we combine both algorithms (i.e., ABC and ACO and propose a new hybrid ABCACO algorithm to solve a Nondeterministic Polynomial (NP hard and finite problem of WSNs. ABCACO algorithm is divided into three main parts: (i selection of optimal number of subregions and further subregion parts, (ii cluster head selection using ABC algorithm, and (iii efficient data transmission using ACO algorithm. We use a hierarchical clustering technique for data transmission; the data is transmitted from member nodes to the subcluster heads and then from subcluster heads to the elected cluster heads based on some threshold value. Cluster heads use an ACO algorithm to discover the best route for data transmission to the base station (BS. The proposed approach is very useful in designing the framework for forest fire detection and monitoring. The simulation results show that the ABCACO algorithm enhances the stability period by 60% and also improves the goodput by 31% against LEACH and WSNCABC, respectively.
An adaptive K-Means Clustering Algorithm and its Application to Face Recognition
Directory of Open Access Journals (Sweden)
N. Rajeswari
2010-01-01
Full Text Available Pattern recognition is an emerging research area that studies the operation and design of systems that recognize patterns in data. Clustering is an essential and very frequently performed task in pattern recognition and data mining.Clustering refers to the process of grouping samples so that the samples are similar within each group. The groups are called clusters. k-means is one of the simplest unsupervised learning algorithms that solve the well known clustering problem. The procedure follows a simple and easy way to classify a given dataset of n points i x through a certain number of clusters fixed apriori. The difficulty in implementing k-means method for a large database is in determining the number of clusters which has to be randomly chosen. To overcome this difficulty, we propose a variation of the k-means algorithm, where the number of clusters ‘k’ can change dynamically depending on the data points and a threshold value given as an input. The proposed algorithm is applied in face recognition which is a very complex form of pattern recognition .It is used to verify whether a test face belongs to the database of faces and if so, identifies it.
A Cluster-Based Fuzzy Fusion Algorithm for Event Detection in Heterogeneous Wireless Sensor Networks
Directory of Open Access Journals (Sweden)
ZiQi Hao
2015-01-01
Full Text Available As limited energy is one of the tough challenges in wireless sensor networks (WSN, energy saving becomes important in increasing the lifecycle of the network. Data fusion enables combining information from several sources thus to provide a unified scenario, which can significantly save sensor energy and enhance sensing data accuracy. In this paper, we propose a cluster-based data fusion algorithm for event detection. We use k-means algorithm to form the nodes into clusters, which can significantly reduce the energy consumption of intracluster communication. Distances between cluster heads and event and energy of clusters are fuzzified, thus to use a fuzzy logic to select the clusters that will participate in data uploading and fusion. Fuzzy logic method is also used by cluster heads for local decision, and then the local decision results are sent to the base station. Decision-level fusion for final decision of event is performed by base station according to the uploaded local decisions and fusion support degree of clusters calculated by fuzzy logic method. The effectiveness of this algorithm is demonstrated by simulation results.
An efficient clustering algorithm for partitioning Y-short tandem repeats data
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Seman Ali
2012-10-01
Full Text Available Abstract Background Y-Short Tandem Repeats (Y-STR data consist of many similar and almost similar objects. This characteristic of Y-STR data causes two problems with partitioning: non-unique centroids and local minima problems. As a result, the existing partitioning algorithms produce poor clustering results. Results Our new algorithm, called k-Approximate Modal Haplotypes (k-AMH, obtains the highest clustering accuracy scores for five out of six datasets, and produces an equal performance for the remaining dataset. Furthermore, clustering accuracy scores of 100% are achieved for two of the datasets. The k-AMH algorithm records the highest mean accuracy score of 0.93 overall, compared to that of other algorithms: k-Population (0.91, k-Modes-RVF (0.81, New Fuzzy k-Modes (0.80, k-Modes (0.76, k-Modes-Hybrid 1 (0.76, k-Modes-Hybrid 2 (0.75, Fuzzy k-Modes (0.74, and k-Modes-UAVM (0.70. Conclusions The partitioning performance of the k-AMH algorithm for Y-STR data is superior to that of other algorithms, owing to its ability to solve the non-unique centroids and local minima problems. Our algorithm is also efficient in terms of time complexity, which is recorded as O(km(n-k and considered to be linear.
Zainuddin, Zarita; Lai, Kee Huong; Ong, Pauline
2013-04-01
Artificial neural networks (ANNs) are powerful mathematical models that are used to solve complex real world problems. Wavelet neural networks (WNNs), which were developed based on the wavelet theory, are a variant of ANNs. During the training phase of WNNs, several parameters need to be initialized; including the type of wavelet activation functions, translation vectors, and dilation parameter. The conventional k-means and fuzzy c-means clustering algorithms have been used to select the translation vectors. However, the solution vectors might get trapped at local minima. In this regard, the evolutionary harmony search algorithm, which is capable of searching for near-optimum solution vectors, both locally and globally, is introduced to circumvent this problem. In this paper, the conventional k-means and fuzzy c-means clustering algorithms were hybridized with the metaheuristic harmony search algorithm. In addition to obtaining the estimation of the global minima accurately, these hybridized algorithms also offer more than one solution to a particular problem, since many possible solution vectors can be generated and stored in the harmony memory. To validate the robustness of the proposed WNNs, the real world problem of epileptic seizure detection was presented. The overall classification accuracy from the simulation showed that the hybridized metaheuristic algorithms outperformed the standard k-means and fuzzy c-means clustering algorithms.
Risk Assessment for Bridges Safety Management during Operation Based on Fuzzy Clustering Algorithm
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Xia Hanyu
2016-01-01
Full Text Available In recent years, large span and large sea-crossing bridges are built, bridges accidents caused by improper operational management occur frequently. In order to explore the better methods for risk assessment of the bridges operation departments, the method based on fuzzy clustering algorithm is selected. Then, the implementation steps of fuzzy clustering algorithm are described, the risk evaluation system is built, and Taizhou Bridge is selected as an example, the quantitation of risk factors is described. After that, the clustering algorithm based on fuzzy equivalence is calculated on MATLAB 2010a. In the last, Taizhou Bridge operation management departments are classified and sorted according to the degree of risk, and the safety situation of operation departments is analyzed.
High-speed detection of emergent market clustering via an unsupervised parallel genetic algorithm
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Dieter Hendricks
2016-02-01
Full Text Available We implement a master-slave parallel genetic algorithm with a bespoke log-likelihood fitness function to identify emergent clusters within price evolutions. We use graphics processing units (GPUs to implement a parallel genetic algorithm and visualise the results using disjoint minimal spanning trees. We demonstrate that our GPU parallel genetic algorithm, implemented on a commercially available general purpose GPU, is able to recover stock clusters in sub-second speed, based on a subset of stocks in the South African market. This approach represents a pragmatic choice for low-cost, scalable parallel computing and is significantly faster than a prototype serial implementation in an optimised C-based fourth-generation programming language, although the results are not directly comparable because of compiler differences. Combined with fast online intraday correlation matrix estimation from high frequency data for cluster identification, the proposed implementation offers cost-effective, near-real-time risk assessment for financial practitioners.
INFRASTRUCTURE BASIS AND ALGORITHM OF MAKING DECISION ON FINANCING OF THE CLUSTER INITIATIVE
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Anastasia Kaplina
2015-09-01
Full Text Available The article from a position of the most effective use of limited budgetary resources, and also investments of potential participants of joint activity the technology of creation of innovatively focused regional clusters which includes not only actually algorithm of making decision on public financing of a cluster initiative in the region, but also ways of formation of effective infrastructure of its support is offered.
2014-07-31
and multi- core configurations [4], [11], [12]. (Completed) c) Find out the limiting computational factors (length, memory, inter- processor ...11], [12]. (Completed) g) Increase the number of minority students that are involved and/or are aware of issues relating DSP algorithms and...our Hardware/Software Testbed Hardware (Cluster): Updated and made operational a 64 processor , 16-node Dell cluster purchased under a previous
A Game Theory Algorithm for Intra-Cluster Data Aggregation in a Vehicular Ad Hoc Network.
Chen, Yuzhong; Weng, Shining; Guo, Wenzhong; Xiong, Naixue
2016-02-19
Vehicular ad hoc networks (VANETs) have an important role in urban management and planning. The effective integration of vehicle information in VANETs is critical to traffic analysis, large-scale vehicle route planning and intelligent transportation scheduling. However, given the limitations in the precision of the output information of a single sensor and the difficulty of information sharing among various sensors in a highly dynamic VANET, effectively performing data aggregation in VANETs remains a challenge. Moreover, current studies have mainly focused on data aggregation in large-scale environments but have rarely discussed the issue of intra-cluster data aggregation in VANETs. In this study, we propose a multi-player game theory algorithm for intra-cluster data aggregation in VANETs by analyzing the competitive and cooperative relationships among sensor nodes. Several sensor-centric metrics are proposed to measure the data redundancy and stability of a cluster. We then study the utility function to achieve efficient intra-cluster data aggregation by considering both data redundancy and cluster stability. In particular, we prove the existence of a unique Nash equilibrium in the game model, and conduct extensive experiments to validate the proposed algorithm. Results demonstrate that the proposed algorithm has advantages over typical data aggregation algorithms in both accuracy and efficiency.
A Game Theory Algorithm for Intra-Cluster Data Aggregation in a Vehicular Ad Hoc Network
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Yuzhong Chen
2016-02-01
Full Text Available Vehicular ad hoc networks (VANETs have an important role in urban management and planning. The effective integration of vehicle information in VANETs is critical to traffic analysis, large-scale vehicle route planning and intelligent transportation scheduling. However, given the limitations in the precision of the output information of a single sensor and the difficulty of information sharing among various sensors in a highly dynamic VANET, effectively performing data aggregation in VANETs remains a challenge. Moreover, current studies have mainly focused on data aggregation in large-scale environments but have rarely discussed the issue of intra-cluster data aggregation in VANETs. In this study, we propose a multi-player game theory algorithm for intra-cluster data aggregation in VANETs by analyzing the competitive and cooperative relationships among sensor nodes. Several sensor-centric metrics are proposed to measure the data redundancy and stability of a cluster. We then study the utility function to achieve efficient intra-cluster data aggregation by considering both data redundancy and cluster stability. In particular, we prove the existence of a unique Nash equilibrium in the game model, and conduct extensive experiments to validate the proposed algorithm. Results demonstrate that the proposed algorithm has advantages over typical data aggregation algorithms in both accuracy and efficiency.
A harmony search algorithm for clustering with feature selection
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Carlos Cobos
2010-01-01
Full Text Available En este artículo se presenta un nuevo algoritmo de clustering denominado IHSK, con la capacidad de seleccionar características en un orden de complejidad lineal. El algoritmo es inspirado en la combinación de los algoritmos de búsqueda armónica y K-means. Para la selección de las características se usó el concepto de variabilidad y un método heurístico que penaliza la presencia de dimensiones con baja probabilidad de aportar en la solución actual. El algoritmo fue probado con conjuntos de datos sintéticos y reales, obteniendo resultados prometedores.
Power backup Density based Clustering Algorithm for Maximizing Lifetime of Wireless Sensor Networks
DEFF Research Database (Denmark)
Wagh, Sanjeev; Prasad, Ramjee
2014-01-01
WSNs consists several nodes spread over experimental fields for specific application temporarily. The spatially distributed sensor nodes sense and gather the information for intended parameters like temperature, sound, vibrations, etc for the particular application. In this paper, we evaluate...... the impact of different algorithms i.e. clustering for densely populated field application, energy backup by adding energy harvesting node in field, positioning energy harvesting node smartly in the field and also positioning the base station in sensor field to optimize the communication between cluster head...... algorithm can be applied for many sensitive applications like military for hostile and remote areas or environmental monitoring where human intervention is not possible....
Segmentation of Mushroom and Cap width Measurement using Modified K-Means Clustering Algorithm
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Eser Sert
2014-01-01
Full Text Available Mushroom is one of the commonly consumed foods. Image processing is one of the effective way for examination of visual features and detecting the size of a mushroom. We developed software for segmentation of a mushroom in a picture and also to measure the cap width of the mushroom. K-Means clustering method is used for the process. K-Means is one of the most successful clustering methods. In our study we customized the algorithm to get the best result and tested the algorithm. In the system, at first mushroom picture is filtered, histograms are balanced and after that segmentation is performed. Results provided that customized algorithm performed better segmentation than classical K-Means algorithm. Tests performed on the designed software showed that segmentation on complex background pictures is performed with high accuracy, and 20 mushrooms caps are measured with 2.281 % relative error.
An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data.
Saeed, Fahad; Pisitkun, Trairak; Knepper, Mark A; Hoffert, Jason D
2012-10-04
High-throughput spectrometers are capable of producing data sets containing thousands of spectra for a single biological sample. These data sets contain a substantial amount of redundancy from peptides that may get selected multiple times in a LC-MS/MS experiment. In this paper, we present an efficient algorithm, CAMS (Clustering Algorithm for Mass Spectra) for clustering mass spectrometry data which increases both the sensitivity and confidence of spectral assignment. CAMS utilizes a novel metric, called F-set, that allows accurate identification of the spectra that are similar. A graph theoretic framework is defined that allows the use of F-set metric efficiently for accurate cluster identifications. The accuracy of the algorithm is tested on real HCD and CID data sets with varying amounts of peptides. Our experiments show that the proposed algorithm is able to cluster spectra with very high accuracy in a reasonable amount of time for large spectral data sets. Thus, the algorithm is able to decrease the computational time by compressing the data sets while increasing the throughput of the data by interpreting low S/N spectra.
A density based link clustering algorithm for overlapping community detection in networks
Zhou, Xu; Liu, Yanheng; Wang, Jian; Li, Chun
2017-11-01
Overlapping is an interesting and common characteristic of community structure in networks. Link clustering method for overlapping community detection has attracted a lot of attention in the area of social networks applications. However, it may make the clustering result with excessive overlap and cluster bridge edge and border edge mistakenly to adjacent communities. To solve this problem, a density based link clustering algorithm is proposed to improve the accuracy of detecting overlapping communities in networks in this study. It creates a number of clusters containing core edges only based on concept named as core density reachable during the expansion. Then an updating strategy for unclassified edges is designed to assign them to the closest cluster. In addition, a similarity measure for computing the similarity between two edges is presented. Experiments on synthetic networks and real networks have been conducted. The experimental results demonstrate that our method performs better than other algorithms on detecting community structure and overlapping nodes, it can get nearly 15% higher than the NMI value of other algorithms on some synthetic networks.
S.Praveena; Dr. S.P Singh
2015-01-01
This paper presents a hybrid clustering algorithm and feed-forward neural network classifier for land-cover mapping of trees, shade, building and road. It starts with the single step preprocessing procedure to make the image suitable for segmentation. The pre-processed image is segmented using the hybrid genetic-Artificial Bee Colony(ABC) algorithm that is developed by hybridizing the ABC and FCM to obtain the effective segmentation in satellite image and classified using neural n...
Real time monitoring of radial distribution system through optimal PSO meter location
Energy Technology Data Exchange (ETDEWEB)
Ramesh, L. [Jadavpur Univ., Kolkotta (India); Chowdhury, S.P.; Chowdhury, S.; Gaunt, C.T. [Cape Town Univ., (South Africa)
2009-07-01
Measurement data collected for remote thermal units (RTUs) are often contaminated by measuring device errors and telemeter noise. This paper presented a new algorithm for the optimal placement of meters used for power system state estimation (SE). The algorithm was designed to reduce the total investment cost for the meters as well as to increase state estimation accuracy. A particle swarm optimization (PSO) algorithm was used to enhance state estimation accuracy. The algorithm was tested using data from the Tamil Nadu Electricity Board in India. The product of the binary decision variable vector and the cost vector were combined to determine the total installation cost of the meters. The control system was monitored by a SCADA device and an RTU. The binary PSO algorithm was used to update velocity vector and determine the global best solution. It was concluded that measured values obtained from the algorithm can be used to estimate the state of the system. 20 refs., 8 figs.
Gaur, Pallavi; Chaturvedi, Anoop
2017-07-22
The clustering pattern and motifs give immense information about any biological data. An application of machine learning algorithms for clustering and candidate motif detection in miRNAs derived from exosomes is depicted in this paper. Recent progress in the field of exosome research and more particularly regarding exosomal miRNAs has led much bioinformatic-based research to come into existence. The information on clustering pattern and candidate motifs in miRNAs of exosomal origin would help in analyzing existing, as well as newly discovered miRNAs within exosomes. Along with obtaining clustering pattern and candidate motifs in exosomal miRNAs, this work also elaborates the usefulness of the machine learning algorithms that can be efficiently used and executed on various programming languages/platforms. Data were clustered and sequence candidate motifs were detected successfully. The results were compared and validated with some available web tools such as 'BLASTN' and 'MEME suite'. The machine learning algorithms for aforementioned objectives were applied successfully. This work elaborated utility of machine learning algorithms and language platforms to achieve the tasks of clustering and candidate motif detection in exosomal miRNAs. With the information on mentioned objectives, deeper insight would be gained for analyses of newly discovered miRNAs in exosomes which are considered to be circulating biomarkers. In addition, the execution of machine learning algorithms on various language platforms gives more flexibility to users to try multiple iterations according to their requirements. This approach can be applied to other biological data-mining tasks as well.
An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images.
Indhumathi, C; Cai, Y Y; Guan, Y Q; Opas, M
2011-07-01
With the rapid advance of three-dimensional (3D) confocal imaging technology, more and more 3D cellular images will be available. Segmentation of intact cells is a critical task in automated image analysis and quantification of cellular microscopic images. One of the major complications in the automatic segmentation of cellular images arises due to the fact that cells are often closely clustered. Several algorithms are proposed for segmenting cell clusters but most of them are 2D based. In other words, these algorithms are designed to segment 2D cell clusters from a single image. Given 2D segmentation methods developed, they can certainly be applied to each image slice with the 3D cellular volume to obtain the segmented cell clusters. Apparently, in such case, the 3D depth information with the volumetric images is not really used. Often, 3D reconstruction is conducted after the individualized segmentation to build the 3D cellular models from segmented 2D cellular contours. Such 2D native process is not appropriate as stacking of individually segmented 2D cells or nuclei do not necessarily form the correct and complete 3D cells or nuclei in 3D. This paper proposes a novel and efficient 3D cluster splitting algorithm based on concavity analysis and interslice spatial coherence. We have taken the advantage of using the 3D boundary points detected using higher order statistics as an input contour for performing the 3D cluster splitting algorithm. The idea is to separate the touching or overlapping cells or nuclei in a 3D native way. Experimental results show the efficiency of our algorithm for 3D microscopic cellular images. © 2011 Nanyang Technological University Journal of Microscopy © 2011 Royal Microscopical Society.
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N.I. Babenko
2014-04-01
Full Text Available Approach to the development of management solutions using the cluster analysis can qualitatively improve the management system by moving objects through the adequate response to the impact of the key factors influencing the characteristics of physical objects. The aim is to attempt to solve the problem of identifying key factors and physical signs of moving physical objects needed to make appropriate management decisions by using cluster analysis. The article defines the types of clustering algorithms; the system of information parameters directly or indirectly characterizing the analyzed characteristics is emphasized, hierarchical and non-hierarchical cluster analysis methods are considered. The research finding is the construction of tree diagram using the program STATISTICA 8, which gives the idea of possible clusters’ number combining physical indicators under the dynamic changes of moving objects. The advantage of cluster analysis usage is the use of factors relating to both internal and external environments of the physical properties’ interaction of moving objects.
An Effective Tri-Clustering Algorithm Combining Expression Data with Gene Regulation Information
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Ao Li
2009-04-01
Full Text Available Motivation: Bi-clustering algorithms aim to identify sets of genes sharing similar expression patterns across a subset of conditions. However direct interpretation or prediction of gene regulatory mechanisms may be difficult as only gene expression data is used. Information about gene regulators may also be available, most commonly about which transcription factors may bind to the promoter region and thus control the expression level of a gene. Thus a method to integrate gene expression and gene regulation information is desirable for clustering and analyzing. Methods: By incorporating gene regulatory information with gene expression data, we define regulated expression values (REV as indicators of how a gene is regulated by a specific factor. Existing bi-clustering methods are extended to a three dimensional data space by developing a heuristic TRI-Clustering algorithm. An additional approach named Automatic Boundary Searching algorithm (ABS is introduced to automatically determine the boundary threshold. Results: Results based on incorporating ChIP-chip data representing transcription factor-gene interactions show that the algorithms are efficient and robust for detecting tri-clusters. Detailed analysis of the tri-cluster extracted from yeast sporulation REV data shows genes in this cluster exhibited significant differences during the middle and late stages. The implicated regulatory network was then reconstructed for further study of defined regulatory mechanisms. Topological and statistical analysis of this network demonstrated evidence of significant changes of TF activities during the different stages of yeast sporulation, and suggests this approach might be a general way to study regulatory networks undergoing transformations.
Cluster algorithms for frustrated two-dimensional Ising antiferromagnets via dual worm constructions
Rakala, Geet; Damle, Kedar
2017-08-01
We report on the development of two dual worm constructions that lead to cluster algorithms for efficient and ergodic Monte Carlo simulations of frustrated Ising models with arbitrary two-spin interactions that extend up to third-neighbors on the triangular lattice. One of these algorithms generalizes readily to other frustrated systems, such as Ising antiferromagnets on the Kagome lattice with further neighbor couplings. We characterize the performance of both these algorithms in a challenging regime with power-law correlations at finite wave vector.
Rakala, Geet; Damle, Kedar
2017-08-01
We report on the development of two dual worm constructions that lead to cluster algorithms for efficient and ergodic Monte Carlo simulations of frustrated Ising models with arbitrary two-spin interactions that extend up to third-neighbors on the triangular lattice. One of these algorithms generalizes readily to other frustrated systems, such as Ising antiferromagnets on the Kagome lattice with further neighbor couplings. We characterize the performance of both these algorithms in a challenging regime with power-law correlations at finite wave vector.
Shahamatnia, Ehsan; Dorotovič, Ivan; Fonseca, Jose M.; Ribeiro, Rita A.
2016-03-01
Developing specialized software tools is essential to support studies of solar activity evolution. With new space missions such as Solar Dynamics Observatory (SDO), solar images are being produced in unprecedented volumes. To capitalize on that huge data availability, the scientific community needs a new generation of software tools for automatic and efficient data processing. In this paper a prototype of a modular framework for solar feature detection, characterization, and tracking is presented. To develop an efficient system capable of automatic solar feature tracking and measuring, a hybrid approach combining specialized image processing, evolutionary optimization, and soft computing algorithms is being followed. The specialized hybrid algorithm for tracking solar features allows automatic feature tracking while gathering characterization details about the tracked features. The hybrid algorithm takes advantages of the snake model, a specialized image processing algorithm widely used in applications such as boundary delineation, image segmentation, and object tracking. Further, it exploits the flexibility and efficiency of Particle Swarm Optimization (PSO), a stochastic population based optimization algorithm. PSO has been used successfully in a wide range of applications including combinatorial optimization, control, clustering, robotics, scheduling, and image processing and video analysis applications. The proposed tool, denoted PSO-Snake model, was already successfully tested in other works for tracking sunspots and coronal bright points. In this work, we discuss the application of the PSO-Snake algorithm for calculating the sidereal rotational angular velocity of the solar corona. To validate the results we compare them with published manual results performed by an expert.
SEGMENTATION OF HYPERSPECTRAL IMAGE USING JSEG BASED ON UNSUPERVISED CLUSTERING ALGORITHMS
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V. Saravana Kumar
2016-11-01
Full Text Available Hyperspectral image analysis is a complicated and challenging task due to the inherent nature of the image. The main aim of this work is to segment the object in hyperspectral scene using image processing technique. This paper address a novel approach entitled as Segmentation of hyperspectral image using JSEG based on unsupervised cluster methods. In the preprocessing part, single band is picked out from the hyperspectral image and then converts into false color image. The JSEG algorithm is segregate the false color image properly without manual parameter adjustment. The segmentation has carried in two major stages. To begin with, colors in the image are quantized to represent several classes which can be used to differentiate regions in the image. Besides, hit rate regions with cognate color regions merging algorithm is used. In region merging part, K-means, Fuzzy C-Means (FCM and Fast K-Means weighted option (FWKM algorithm are used to segregate the image in accordance with the color for each cluster and its neighborhoods. Experiment results of above clustering method could be analyzed in terms of mean, standard deviation, number of cluster, number of pixels, time taken, number of objects occur in the resultant image. FWKM algorithm results yields good performance than its counterparts.
A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks
Hruz, Tomas; Lucas, Christoph; Laule, Oliver; Zimmermann, Philip
2013-01-01
Visualization of large complex networks has become an indispensable part of systems biology, where organisms need to be considered as one complex system. The visualization of the corresponding network is challenging due to the size and density of edges. In many cases, the use of standard visualization algorithms can lead to high running times and poorly readable visualizations due to many edge crossings. We suggest an approach that analyzes the structure of the graph first and then generates a new graph which contains specific semantic symbols for regular substructures like dense clusters. We propose a multilevel gamma-clustering layout visualization algorithm (MLGA) which proceeds in three subsequent steps: (i) a multilevel γ-clustering is used to identify the structure of the underlying network, (ii) the network is transformed to a tree, and (iii) finally, the resulting tree which shows the network structure is drawn using a variation of a force-directed algorithm. The algorithm has a potential to visualize very large networks because it uses modern clustering heuristics which are optimized for large graphs. Moreover, most of the edges are removed from the visual representation which allows keeping the overview over complex graphs with dense subgraphs. PMID:23864855
Performance evaluation of simple linear iterative clustering algorithm on medical image processing.
Cong, Jinyu; Wei, Benzheng; Yin, Yilong; Xi, Xiaoming; Zheng, Yuanjie
2014-01-01
Simple Linear Iterative Clustering (SLIC) algorithm is increasingly applied to different kinds of image processing because of its excellent perceptually meaningful characteristics. In order to better meet the needs of medical image processing and provide technical reference for SLIC on the application of medical image segmentation, two indicators of boundary accuracy and superpixel uniformity are introduced with other indicators to systematically analyze the performance of SLIC algorithm, compared with Normalized cuts and Turbopixels algorithm. The extensive experimental results show that SLIC is faster and less sensitive to the image type and the setting superpixel number than other similar algorithms such as Turbopixels and Normalized cuts algorithms. And it also has a great benefit to the boundary recall, the robustness of fuzzy boundary, the setting superpixel size and the segmentation performance on medical image segmentation.
An effective trust-based recommendation method using a novel graph clustering algorithm
Moradi, Parham; Ahmadian, Sajad; Akhlaghian, Fardin
2015-10-01
Recommender systems are programs that aim to provide personalized recommendations to users for specific items (e.g. music, books) in online sharing communities or on e-commerce sites. Collaborative filtering methods are important and widely accepted types of recommender systems that generate recommendations based on the ratings of like-minded users. On the other hand, these systems confront several inherent issues such as data sparsity and cold start problems, caused by fewer ratings against the unknowns that need to be predicted. Incorporating trust information into the collaborative filtering systems is an attractive approach to resolve these problems. In this paper, we present a model-based collaborative filtering method by applying a novel graph clustering algorithm and also considering trust statements. In the proposed method first of all, the problem space is represented as a graph and then a sparsest subgraph finding algorithm is applied on the graph to find the initial cluster centers. Then, the proposed graph clustering algorithm is performed to obtain the appropriate users/items clusters. Finally, the identified clusters are used as a set of neighbors to recommend unseen items to the current active user. Experimental results based on three real-world datasets demonstrate that the proposed method outperforms several state-of-the-art recommender system methods.
MixSim : An R Package for Simulating Data to Study Performance of Clustering Algorithms
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Volodymyr Melnykov
2012-11-01
Full Text Available The R package MixSim is a new tool that allows simulating mixtures of Gaussian distributions with different levels of overlap between mixture components. Pairwise overlap, defined as a sum of two misclassification probabilities, measures the degree of interaction between components and can be readily employed to control the clustering complexity of datasets simulated from mixtures. These datasets can then be used for systematic performance investigation of clustering and finite mixture modeling algorithms. Among other capabilities of MixSim, there are computing the exact overlap for Gaussian mixtures, simulating Gaussian and non-Gaussian data, simulating outliers and noise variables, calculating various measures of agreement between two partitionings, and constructing parallel distribution plots for the graphical display of finite mixture models. All features of the package are illustrated in great detail. The utility of the package is highlighted through a small comparison study of several popular clustering algorithms.
An improved optimum-path forest clustering algorithm for remote sensing image segmentation
Chen, Siya; Sun, Tieli; Yang, Fengqin; Sun, Hongguang; Guan, Yu
2018-03-01
Remote sensing image segmentation is a key technology for processing remote sensing images. The image segmentation results can be used for feature extraction, target identification and object description. Thus, image segmentation directly affects the subsequent processing results. This paper proposes a novel Optimum-Path Forest (OPF) clustering algorithm that can be used for remote sensing segmentation. The method utilizes the principle that the cluster centres are characterized based on their densities and the distances between the centres and samples with higher densities. A new OPF clustering algorithm probability density function is defined based on this principle and applied to remote sensing image segmentation. Experiments are conducted using five remote sensing land cover images. The experimental results illustrate that the proposed method can outperform the original OPF approach.
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Taegwon Jeong
2011-05-01
Full Text Available Clustering is an important mechanism that efficiently provides information for mobile nodes and improves the processing capacity of routing, bandwidth allocation, and resource management and sharing. Clustering algorithms can be based on such criteria as the battery power of nodes, mobility, network size, distance, speed and direction. Above all, in order to achieve good clustering performance, overhead should be minimized, allowing mobile nodes to join and leave without perturbing the membership of the cluster while preserving current cluster structure as much as possible. This paper proposes a Fuzzy Relevance-based Cluster head selection Algorithm (FRCA to solve problems found in existing wireless mobile ad hoc sensor networks, such as the node distribution found in dynamic properties due to mobility and flat structures and disturbance of the cluster formation. The proposed mechanism uses fuzzy relevance to select the cluster head for clustering in wireless mobile ad hoc sensor networks. In the simulation implemented on the NS-2 simulator, the proposed FRCA is compared with algorithms such as the Cluster-based Routing Protocol (CBRP, the Weighted-based Adaptive Clustering Algorithm (WACA, and the Scenario-based Clustering Algorithm for Mobile ad hoc networks (SCAM. The simulation results showed that the proposed FRCA achieves better performance than that of the other existing mechanisms.
Lee, Chongdeuk; Jeong, Taegwon
2011-01-01
Clustering is an important mechanism that efficiently provides information for mobile nodes and improves the processing capacity of routing, bandwidth allocation, and resource management and sharing. Clustering algorithms can be based on such criteria as the battery power of nodes, mobility, network size, distance, speed and direction. Above all, in order to achieve good clustering performance, overhead should be minimized, allowing mobile nodes to join and leave without perturbing the membership of the cluster while preserving current cluster structure as much as possible. This paper proposes a Fuzzy Relevance-based Cluster head selection Algorithm (FRCA) to solve problems found in existing wireless mobile ad hoc sensor networks, such as the node distribution found in dynamic properties due to mobility and flat structures and disturbance of the cluster formation. The proposed mechanism uses fuzzy relevance to select the cluster head for clustering in wireless mobile ad hoc sensor networks. In the simulation implemented on the NS-2 simulator, the proposed FRCA is compared with algorithms such as the Cluster-based Routing Protocol (CBRP), the Weighted-based Adaptive Clustering Algorithm (WACA), and the Scenario-based Clustering Algorithm for Mobile ad hoc networks (SCAM). The simulation results showed that the proposed FRCA achieves better performance than that of the other existing mechanisms.
PSO-based optimization of PI regulator and VA loading of a SRF ...
African Journals Online (AJOL)
DR OKE
results show that the proposed PSO technique causes minimum error and minimum VA loading angle by optimally choosing parameters of PI and minimum VA angle as compared to GA technique. Keywords: Active power filter (APF), synchronous reference frame (SRF), Genetic algorithm (GA), Particle Swarm. Optimization ...
Lord, Etienne; Diallo, Abdoulaye Baniré; Makarenkov, Vladimir
2015-03-03
Workflows, or computational pipelines, consisting of collections of multiple linked tasks are becoming more and more popular in many scientific fields, including computational biology. For example, simulation studies, which are now a must for statistical validation of new bioinformatics methods and software, are frequently carried out using the available workflow platforms. Workflows are typically organized to minimize the total execution time and to maximize the efficiency of the included operations. Clustering algorithms can be applied either for regrouping similar workflows for their simultaneous execution on a server, or for dispatching some lengthy workflows to different servers, or for classifying the available workflows with a view to performing a specific keyword search. In this study, we consider four different workflow encoding and clustering schemes which are representative for bioinformatics projects. Some of them allow for clustering workflows with similar topological features, while the others regroup workflows according to their specific attributes (e.g. associated keywords) or execution time. The four types of workflow encoding examined in this study were compared using the weighted versions of k-means and k-medoids partitioning algorithms. The Calinski-Harabasz, Silhouette and logSS clustering indices were considered. Hierarchical classification methods, including the UPGMA, Neighbor Joining, Fitch and Kitsch algorithms, were also applied to classify bioinformatics workflows. Moreover, a novel pairwise measure of clustering solution stability, which can be computed in situations when a series of independent program runs is carried out, was introduced. Our findings based on the analysis of 220 real-life bioinformatics workflows suggest that the weighted clustering models based on keywords information or tasks execution times provide the most appropriate clustering solutions. Using datasets generated by the Armadillo and Taverna scientific workflow
Usage of Clustering Algorithm to Segment Image into Simply Connected Domains
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S. V. Belim
2015-01-01
Full Text Available The article suggests a method of image segmentation into simply connected domains based on color. Pixels from an original image are represented as points in five-dimensional space which includes three color and two spatial coordinates. The points are normalized in order to eliminate distinguished characteristics. The set of points is compared with a weighted complete graph. The points of five-dimensional space are vertexes in the graph. Euclidian distance between the points is used as weights of the edges in the graph. To solve the task of clustering, a minimum spanning tree of the graph is built. For clustering, the tree is separated into sub-trees by removing some edges. Each sub-tree is a simply connected domain on the original image. In order to improve algorithm speed and reduce memory usage a greedy algorithm is used to build this minimum spanning tree for the graph. Edges to be removed are searched on the graph representing the length of an added edge versus a sequence number of its adding to the tree in the greedy algorithm. The desired edges are detected as maximums on the graphic. This search is based on assumption that transition to an adjacent cluster leads to connection of longer edge in comparison with edges within a cluster. Segmentation into clusters is iterative. At each step the bigger clusters are divided into smaller ones. It means that hierarchy of clusters can be built. A computer experiment was carried out using different images.The suggested method has no disadvantages of the most common method of k-means and allows dividing domains with different colors but the same intensity. Therewith there is no need to specify a number of clusters. Instead, it is necessary to choose a segmentation depth then a number of clusters will be automatically defined. The suggested method has no disadvantages of detection of image edges either. It is sufficient to find one point of image edge to separate two domains.A distinctive feature of
Zhu, Rong; Liu, Jin-Xing; Zhang, Yuan-Ke; Guo, Ying
2017-12-02
Detecting genomes with similar expression patterns using clustering techniques plays an important role in gene expression data analysis. Non-negative matrix factorization (NMF) is an effective method for clustering the analysis of gene expression data. However, the NMF-based method is performed within the Euclidean space, and it is usually inappropriate for revealing the intrinsic geometric structure of data space. In order to overcome this shortcoming, Cai et al. proposed a novel algorithm, called graph regularized non-negative matrices factorization (GNMF). Motivated by the topological structure of the GNMF-based method, we propose improved graph regularized non-negative matrix factorization (GNMF) to facilitate the display of geometric structure of data space. Robust manifold non-negative matrix factorization (RM-GNMF) is designed for cancer gene clustering, leading to an enhancement of the GNMF-based algorithm in terms of robustness. We combine the l 2 , 1 -norm NMF with spectral clustering to conduct the wide-ranging experiments on the three known datasets. Clustering results indicate that the proposed method outperforms the previous methods, which displays the latest application of the RM-GNMF-based method in cancer gene clustering.
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Seung-Kil Lim
2017-01-01
Full Text Available This study focuses on the N-level batching problem with a hierarchical clustering structure. Clustering is the task of grouping a set of item types in such a way that item types in the same cluster are more similar (in some sense or another to each other than to those in other clusters. In hierarchical clustering structure, more and more different item types are clustered together as the level of the hierarchy increases. N-level batching is the process by which items with different types are grouped into several batches passed from level 1 to level N sequentially for given hierarchical clustering structure such that batches in each level should satisfy the maximum and minimum batch size requirements of the level. We consider two types of processing costs of the batches: unit processing cost and batch processing cost. We formulate the N-level batching problem with a hierarchical clustering structure as a nonlinear integer programming model with the objective of minimizing the total processing cost. To solve the problem optimally, we propose a multidimensional dynamic programming algorithm with an example.
Optimal Stabilization of A Quadrotor UAV by a Constrained Fuzzy Control and PSO
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Boubertakh Hamid
2017-01-01
Full Text Available This work aims to design an optimal fuzzy PD (FPD control for the attitude and altitude stabilization of a quadrotor. The control design is done by mean of the particle swarm optimization (PSO under the constraints of the controller interpretability and the saturation of the actuators. Concretely, a decentralized control structure is adopted where four FPD controllers are used to stabilize the quadrotor angles (roll, pitch and yaw and height. A PSO-based algorithm is used to simultaneously tune the four constrained controllers regarding a cost function quantifying the whole system performances. The simulation results are presented to show the efficiency of the proposed approach.
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Julián Cote
2011-12-01
Full Text Available En este artículo se presentan los principales resultados de la evaluación que se llevó a cabo relacionada con la implementación del método de optimización PSO de convergencia garantizada en topología alternante con el método simplex, en un procesador digital de señales (DSP. Se comparó desempeño con funciones de prueba convencionalmente utilizadas en la evaluación de algoritmos de optimización. Se hizo la programación en el DSP confirmando la viabilidad de su implementación en este tipo de dispositivo caracterizado por ser transportable, de reducido tamaño, flexibilidad y bajo costo. No obstante este logro, se encontró que su mayor tiempo de cómputo sigue siendo aún su principal debilidad, al menos con el tipo de funciones probadas.This article shows the main results of an evaluation related to the implementation of the convergence PSO method assured in alternating topology with the simplex method, in a Digital Signal Processor (DSP. Comparisons on the performance of testing functions conventionally used for the evaluation of optimization algorithms were made. A programming was executed on the DSP confirming the feasibility of its implementation in this kind of device characterized by its small size, low cost, and portable feature. Despite this achievement, it was found that its longest computation time is still its main weakness, at least with the kind of functions tested.
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Татьяна Борисовна Шатовская
2015-03-01
Full Text Available In this work results of modified Chameleon algorithm are discussed. Hierarchical multilevel algorithms consist of several stages: building the graph, coarsening, partitioning, recovering. Exploring of clustering quality for different data sets with different combinations of algorithms on different stages of the algorithm is the main aim of the article. And also aim is improving the construction phase through the optimization algorithm of choice k in the building the graph k-nearest neighbors
Multiobjective Economic Load Dispatch Problem Solved by New PSO
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Nagendra Singh
2015-01-01
Full Text Available Proposed in this paper is a new particle swarm optimization technique for the solution of economic load dispatch as well as environmental emission of the thermal power plant with power balance and generation limit constraints. Economic load dispatch is an online problem to minimize the total generating cost of the thermal power plant and satisfy the equality and inequality constraints. Thermal power plants use fossil fuels for the generation of power; fossil fuel emits many toxic gases which pollute the environment. This paper not only considers the economic load dispatch problem to reduce the total generation cost of the thermal power plant but also deals with environmental emission minimization. In this paper, fuel cost and the environmental emission functions are considered and formulated as a multiobjective economic load dispatch problem. For obtaining the solution of multiobjective economic load dispatch problem a new PSO called moderate random search PSO was used. MRPSO enhances the ability of particles to explore in the search spaces more effectively and increases their convergence rates. The proposed algorithm is tested for the IEEE 30 bus test systems. The results obtained by MRPSO algorithm show that it is effective and efficient.
PSO-tuned PID controller for coupled tank system via priority-based fitness scheme
Jaafar, Hazriq Izzuan; Hussien, Sharifah Yuslinda Syed; Selamat, Nur Asmiza; Abidin, Amar Faiz Zainal; Aras, Mohd Shahrieel Mohd; Nasir, Mohamad Na'im Mohd; Bohari, Zul Hasrizal
2015-05-01
The industrial applications of Coupled Tank System (CTS) are widely used especially in chemical process industries. The overall process is require liquids to be pumped, stored in the tank and pumped again to another tank. Nevertheless, the level of liquid in tank need to be controlled and flow between two tanks must be regulated. This paper presents development of an optimal PID controller for controlling the desired liquid level of the CTS. Two method of Particle Swarm Optimization (PSO) algorithm will be tested in optimizing the PID controller parameters. These two methods of PSO are standard Particle Swarm Optimization (PSO) and Priority-based Fitness Scheme in Particle Swarm Optimization (PFPSO). Simulation is conducted within Matlab environment to verify the performance of the system in terms of settling time (Ts), steady state error (SSE) and overshoot (OS). It has been demonstrated that implementation of PSO via Priority-based Fitness Scheme (PFPSO) for this system is potential technique to control the desired liquid level and improve the system performances compared with standard PSO.
FctClus: A Fast Clustering Algorithm for Heterogeneous Information Networks.
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Jing Yang
Full Text Available It is important to cluster heterogeneous information networks. A fast clustering algorithm based on an approximate commute time embedding for heterogeneous information networks with a star network schema is proposed in this paper by utilizing the sparsity of heterogeneous information networks. First, a heterogeneous information network is transformed into multiple compatible bipartite graphs from the compatible point of view. Second, the approximate commute time embedding of each bipartite graph is computed using random mapping and a linear time solver. All of the indicator subsets in each embedding simultaneously determine the target dataset. Finally, a general model is formulated by these indicator subsets, and a fast algorithm is derived by simultaneously clustering all of the indicator subsets using the sum of the weighted distances for all indicators for an identical target object. The proposed fast algorithm, FctClus, is shown to be efficient and generalizable and exhibits high clustering accuracy and fast computation speed based on a theoretic analysis and experimental verification.
Fuzzy-Logic Based Distributed Energy-Efficient Clustering Algorithm for Wireless Sensor Networks
Zhang, Ying; Wang, Jun; Han, Dezhi; Wu, Huafeng; Zhou, Rundong
2017-01-01
Due to the high-energy efficiency and scalability, the clustering routing algorithm has been widely used in wireless sensor networks (WSNs). In order to gather information more efficiently, each sensor node transmits data to its Cluster Head (CH) to which it belongs, by multi-hop communication. However, the multi-hop communication in the cluster brings the problem of excessive energy consumption of the relay nodes which are closer to the CH. These nodes’ energy will be consumed more quickly than the farther nodes, which brings the negative influence on load balance for the whole networks. Therefore, we propose an energy-efficient distributed clustering algorithm based on fuzzy approach with non-uniform distribution (EEDCF). During CHs’ election, we take nodes’ energies, nodes’ degree and neighbor nodes’ residual energies into consideration as the input parameters. In addition, we take advantage of Takagi, Sugeno and Kang (TSK) fuzzy model instead of traditional method as our inference system to guarantee the quantitative analysis more reasonable. In our scheme, each sensor node calculates the probability of being as CH with the help of fuzzy inference system in a distributed way. The experimental results indicate EEDCF algorithm is better than some current representative methods in aspects of data transmission, energy consumption and lifetime of networks. PMID:28671641
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Liling Sun
2015-01-01
Full Text Available An improved multiobjective ABC algorithm based on K-means clustering, called CMOABC, is proposed. To fasten the convergence rate of the canonical MOABC, the way of information communication in the employed bees’ phase is modified. For keeping the population diversity, the multiswarm technology based on K-means clustering is employed to decompose the population into many clusters. Due to each subcomponent evolving separately, after every specific iteration, the population will be reclustered to facilitate information exchange among different clusters. Application of the new CMOABC on several multiobjective benchmark functions shows a marked improvement in performance over the fast nondominated sorting genetic algorithm (NSGA-II, the multiobjective particle swarm optimizer (MOPSO, and the multiobjective ABC (MOABC. Finally, the CMOABC is applied to solve the real-world optimal power flow (OPF problem that considers the cost, loss, and emission impacts as the objective functions. The 30-bus IEEE test system is presented to illustrate the application of the proposed algorithm. The simulation results demonstrate that, compared to NSGA-II, MOPSO, and MOABC, the proposed CMOABC is superior for solving OPF problem, in terms of optimization accuracy.
Scalable fault tolerant algorithms for linear-scaling coupled-cluster electronic structure methods.
Energy Technology Data Exchange (ETDEWEB)
Leininger, Matthew L.; Nielsen, Ida Marie B.; Janssen, Curtis L.
2004-10-01
By means of coupled-cluster theory, molecular properties can be computed with an accuracy often exceeding that of experiment. The high-degree polynomial scaling of the coupled-cluster method, however, remains a major obstacle in the accurate theoretical treatment of mainstream chemical problems, despite tremendous progress in computer architectures. Although it has long been recognized that this super-linear scaling is non-physical, the development of efficient reduced-scaling algorithms for massively parallel computers has not been realized. We here present a locally correlated, reduced-scaling, massively parallel coupled-cluster algorithm. A sparse data representation for handling distributed, sparse multidimensional arrays has been implemented along with a set of generalized contraction routines capable of handling such arrays. The parallel implementation entails a coarse-grained parallelization, reducing interprocessor communication and distributing the largest data arrays but replicating as many arrays as possible without introducing memory bottlenecks. The performance of the algorithm is illustrated by several series of runs for glycine chains using a Linux cluster with an InfiniBand interconnect.
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Jiechang Wen
2012-01-01
Full Text Available Within the learning framework of maximum weighted likelihood (MWL proposed by Cheung, 2004 and 2005, this paper will develop a batch Rival Penalized Expectation-Maximization (RPEM algorithm for density mixture clustering provided that all observations are available before the learning process. Compared to the adaptive RPEM algorithm in Cheung, 2004 and 2005, this batch RPEM need not assign the learning rate analogous to the Expectation-Maximization (EM algorithm (Dempster et al., 1977, but still preserves the capability of automatic model selection. Further, the convergence speed of this batch RPEM is faster than the EM and the adaptive RPEM in general. The experiments show the superior performance of the proposed algorithm on the synthetic data and color image segmentation.
Cluster-Based Multipolling Sequencing Algorithm for Collecting RFID Data in Wireless LANs
Choi, Woo-Yong; Chatterjee, Mainak
2015-03-01
With the growing use of RFID (Radio Frequency Identification), it is becoming important to devise ways to read RFID tags in real time. Access points (APs) of IEEE 802.11-based wireless Local Area Networks (LANs) are being integrated with RFID networks that can efficiently collect real-time RFID data. Several schemes, such as multipolling methods based on the dynamic search algorithm and random sequencing, have been proposed. However, as the number of RFID readers associated with an AP increases, it becomes difficult for the dynamic search algorithm to derive the multipolling sequence in real time. Though multipolling methods can eliminate the polling overhead, we still need to enhance the performance of the multipolling methods based on random sequencing. To that extent, we propose a real-time cluster-based multipolling sequencing algorithm that drastically eliminates more than 90% of the polling overhead, particularly so when the dynamic search algorithm fails to derive the multipolling sequence in real time.
An algorithm of discovering signatures from DNA databases on a computer cluster.
Lee, Hsiao Ping; Sheu, Tzu-Fang
2014-10-05
Signatures are short sequences that are unique and not similar to any other sequence in a database that can be used as the basis to identify different species. Even though several signature discovery algorithms have been proposed in the past, these algorithms require the entirety of databases to be loaded in the memory, thus restricting the amount of data that they can process. It makes those algorithms unable to process databases with large amounts of data. Also, those algorithms use sequential models and have slower discovery speeds, meaning that the efficiency can be improved. In this research, we are debuting the utilization of a divide-and-conquer strategy in signature discovery and have proposed a parallel signature discovery algorithm on a computer cluster. The algorithm applies the divide-and-conquer strategy to solve the problem posed to the existing algorithms where they are unable to process large databases and uses a parallel computing mechanism to effectively improve the efficiency of signature discovery. Even when run with just the memory of regular personal computers, the algorithm can still process large databases such as the human whole-genome EST database which were previously unable to be processed by the existing algorithms. The algorithm proposed in this research is not limited by the amount of usable memory and can rapidly find signatures in large databases, making it useful in applications such as Next Generation Sequencing and other large database analysis and processing. The implementation of the proposed algorithm is available at http://www.cs.pu.edu.tw/~fang/DDCSDPrograms/DDCSD.htm.
Pluchino, Alessandro; Latora, Vito
2008-01-01
We have recently introduced an efficient method for the detection and identification of modules in complex networks, based on the de-synchronization properties (dynamical clustering) of phase oscillators. In this paper we apply the dynamical clustering tecnique to the identification of communities of marine organisms living in the Chesapeake Bay food web. We show that our algorithm is able to perform a very reliable classification of the real communities existing in this ecosystem by using different kinds of dynamical oscillators. We compare also our results with those of other methods for the detection of community structures in complex networks.
Performance Analysis of Apriori Algorithm with Different Data Structures on Hadoop Cluster
Singh, Sudhakar; Garg, Rakhi; Mishra, P. K.
2015-10-01
Mining frequent itemsets from massive datasets is always being a most important problem of data mining. Apriori is the most popular and simplest algorithm for frequent itemset mining. To enhance the efficiency and scalability of Apriori, a number of algorithms have been proposed addressing the design of efficient data structures, minimizing database scan and parallel and distributed processing. MapReduce is the emerging parallel and distributed technology to process big datasets on Hadoop Cluster. To mine big datasets it is essential to re-design the data mining algorithm on this new paradigm. In this paper, we implement three variations of Apriori algorithm using data structures hash tree, trie and hash table trie i.e. trie with hash technique on MapReduce paradigm. We emphasize and investigate the significance of these three data structures for Apriori algorithm on Hadoop cluster, which has not been given attention yet. Experiments are carried out on both real life and synthetic datasets which shows that hash table trie data structures performs far better than trie and hash tree in terms of execution time. Moreover the performance in case of hash tree becomes worst.
Robustness of ‘cut and splice’ genetic algorithms in the structural optimization of atomic clusters
Froltsov, Vladimir A.; Reuter, Karsten
2009-05-01
We return to the geometry optimization problem of Lennard-Jones clusters to analyze the performance dependence of 'cut and splice' genetic algorithms (GAs) on the employed population size. We generally find that admixing twinning mutation moves leads to an improved robustness of the algorithm efficiency with respect to this a priori unknown technical parameter. The resulting very stable performance of the corresponding mutation + mating GA implementation over a wide range of population sizes is an important feature when addressing unknown systems with computationally involved first-principles based GA sampling.
Cognitive and social information based PSO | Tripathi | International ...
African Journals Online (AJOL)
CSIPSO). The performance of CSI-PSO is validated by 23 benchmark functions and the empirical results clearly support the effectiveness of our concept. Keywords: Particle Swarm, PSO, Swarm Theory, Benchmark functions ...
Bartender: a fast and accurate clustering algorithm to count barcode reads.
Zhao, Lu; Liu, Zhimin; Levy, Sasha F; Wu, Song
2017-10-23
Barcode sequencing (bar-seq) is a high-throughput, and cost effective method to assay large numbers of cell lineages or genotypes in complex cell pools. Because of its advantages, applications for bar-seq are quickly growing - from using neutral random barcodes to study the evolution of microbes or cancer, to using pseudo-barcodes, such as shRNAs or sgRNAs to simultaneously screen large numbers of cell perturbations. However, the computational pipelines for bar-seq clustering are not well developed. Available methods often yield a high frequency of under-clustering artifacts that result in spurious barcodes, or over-clustering artifacts that group distinct barcodes together. Here, we developed Bartender, an accurate clustering algorithm to detect barcodes and their abundances from raw next-generation sequencing data. In contrast with existing methods that cluster based on sequence similarity alone, Bartender uses a modified two-sample proportion test that also considers cluster size. This modification results in higher accuracy and lower rates of under- and over-clustering artifacts. Additionally, Bartender includes unique molecular identifier (UMI) handling and a "multiple time point" mode that matches barcode clusters between different clustering runs for seamless handling of time course data. Bartender is a set of simple-to-use command line tools that can be performed on a laptop at comparable run times to existing methods. Bartender is available at no charge for non-commercial use at https://github.com/LaoZZZZZ/bartender-1.1. song.wu@stonybrook.edu, sasha.levy@stonybrook.edu. Supplementary data are available at Bioinformatics online.
A Corporate Credit Rating Model Using Support Vector Domain Combined with Fuzzy Clustering Algorithm
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Xuesong Guo
2012-01-01
Full Text Available Corporate credit-rating prediction using statistical and artificial intelligence techniques has received considerable attentions in the literature. Different from the thoughts of various techniques for adopting support vector machines as binary classifiers originally, a new method, based on support vector domain combined with fuzzy clustering algorithm for multiclassification, is proposed in the paper to accomplish corporate credit rating. By data preprocessing using fuzzy clustering algorithm, only the boundary data points are selected as training samples to accomplish support vector domain specification to reduce computational cost and also achieve better performance. To validate the proposed methodology, real-world cases are used for experiments, with results compared with conventional multiclassification support vector machine approaches and other artificial intelligence techniques. The results show that the proposed model improves the performance of corporate credit-rating with less computational consumption.
SEGMENTATION OF HYPERSPECTRAL IMAGE USING JSEG BASED ON UNSUPERVISED CLUSTERING ALGORITHMS
V. Saravana Kumar; E.R. Naganathan
2016-01-01
Hyperspectral image analysis is a complicated and challenging task due to the inherent nature of the image. The main aim of this work is to segment the object in hyperspectral scene using image processing technique. This paper address a novel approach entitled as Segmentation of hyperspectral image using JSEG based on unsupervised cluster methods. In the preprocessing part, single band is picked out from the hyperspectral image and then converts into false color image. The JSEG algorithm is s...
User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm
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Serge Thomas Mickala Bourobou
2015-05-01
Full Text Available This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen’s temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home.
User Activity Recognition in Smart Homes Using Pattern Clustering Applied to Temporal ANN Algorithm.
Bourobou, Serge Thomas Mickala; Yoo, Younghwan
2015-05-21
This paper discusses the possibility of recognizing and predicting user activities in the IoT (Internet of Things) based smart environment. The activity recognition is usually done through two steps: activity pattern clustering and activity type decision. Although many related works have been suggested, they had some limited performance because they focused only on one part between the two steps. This paper tries to find the best combination of a pattern clustering method and an activity decision algorithm among various existing works. For the first step, in order to classify so varied and complex user activities, we use a relevant and efficient unsupervised learning method called the K-pattern clustering algorithm. In the second step, the training of smart environment for recognizing and predicting user activities inside his/her personal space is done by utilizing the artificial neural network based on the Allen's temporal relations. The experimental results show that our combined method provides the higher recognition accuracy for various activities, as compared with other data mining classification algorithms. Furthermore, it is more appropriate for a dynamic environment like an IoT based smart home.
A spectral clustering search algorithm for predicting shallow landslide size and location
Bellugi, Dino; Milledge, David G.; Dietrich, William E.; McKean, Jim A.; Perron, J. Taylor; Sudderth, Erik B.; Kazian, Brian
2015-02-01
The potential hazard and geomorphic significance of shallow landslides depend on their location and size. Commonly applied one-dimensional stability models do not include lateral resistances and cannot predict landslide size. Multidimensional models must be applied to specific geometries, which are not known a priori, and testing all possible geometries is computationally prohibitive. We present an efficient deterministic search algorithm based on spectral graph theory and couple it with a multidimensional stability model to predict discrete landslides in applications at scales broader than a single hillslope using gridded spatial data. The algorithm is general, assuming only that instability results when driving forces acting on a cluster of cells exceed the resisting forces on its margins and that clusters behave as rigid blocks with a failure plane at the soil-bedrock interface. This algorithm recovers predefined clusters of unstable cells of varying shape and size on a synthetic landscape, predicts the size, location, and shape of an observed shallow landslide using field-measured physical parameters, and is robust to modest changes in input parameters. The search algorithm identifies patches of potential instability within large areas of stable landscape. Within these patches will be many different combinations of cells with a Factor of Safety less than one, suggesting that subtle variations in local conditions (e.g., pore pressure and root strength) may determine the ultimate form and exact location at a specific site. Nonetheless, the tests presented here suggest that the search algorithm enables the prediction of shallow landslide size as well as location across landscapes.
Numerical linked-cluster algorithms. I. Spin systems on square, triangular, and kagomé lattices.
Rigol, Marcos; Bryant, Tyler; Singh, Rajiv R P
2007-06-01
We discuss recently introduced numerical linked-cluster (NLC) algorithms that allow one to obtain temperature-dependent properties of quantum lattice models, in the thermodynamic limit, from exact diagonalization of finite clusters. We present studies of thermodynamic observables for spin models on square, triangular, and kagomé lattices. Results for several choices of clusters and extrapolations methods, that accelerate the convergence of NLCs, are presented. We also include a comparison of NLC results with those obtained from exact analytical expressions (where available), high-temperature expansions (HTE), exact diagonalization (ED) of finite periodic systems, and quantum Monte Carlo simulations. For many models and properties NLC results are substantially more accurate than HTE and ED.
DEFF Research Database (Denmark)
Vlachogiannis, Ioannis (John); Lee, KY
2009-01-01
In this paper an improved coordinated aggregation-based particle swarm optimization (ICA-PSO) algorithm is introduced for solving the optimal economic load dispatch (ELD) problem in power systems. In the ICA-PSO algorithm each particle in the swarm retains a memory of its best position ever...... encountered, and is attracted only by other particles with better achievements than its own with the exception of the particle with the best achievement, which moves randomly. Moreover, the population size is increased adaptively, the number of search intervals for the particles is selected adaptively...... and the particles search the decision space with accuracy up to two digit points resulting in the improved convergence of the process. The ICA-PSO algorithm is tested on a number of power systems, including the systems with 6, 13, 15, and 40 generating units, the island power system of Crete in Greece...
Big Data GPU-Driven Parallel Processing Spatial and Spatio-Temporal Clustering Algorithms
Konstantaras, Antonios; Skounakis, Emmanouil; Kilty, James-Alexander; Frantzeskakis, Theofanis; Maravelakis, Emmanuel
2016-04-01
Advances in graphics processing units' technology towards encompassing parallel architectures [1], comprised of thousands of cores and multiples of parallel threads, provide the foundation in terms of hardware for the rapid processing of various parallel applications regarding seismic big data analysis. Seismic data are normally stored as collections of vectors in massive matrices, growing rapidly in size as wider areas are covered, denser recording networks are being established and decades of data are being compiled together [2]. Yet, many processes regarding seismic data analysis are performed on each seismic event independently or as distinct tiles [3] of specific grouped seismic events within a much larger data set. Such processes, independent of one another can be performed in parallel narrowing down processing times drastically [1,3]. This research work presents the development and implementation of three parallel processing algorithms using Cuda C [4] for the investigation of potentially distinct seismic regions [5,6] present in the vicinity of the southern Hellenic seismic arc. The algorithms, programmed and executed in parallel comparatively, are the: fuzzy k-means clustering with expert knowledge [7] in assigning overall clusters' number; density-based clustering [8]; and a selves-developed spatio-temporal clustering algorithm encompassing expert [9] and empirical knowledge [10] for the specific area under investigation. Indexing terms: GPU parallel programming, Cuda C, heterogeneous processing, distinct seismic regions, parallel clustering algorithms, spatio-temporal clustering References [1] Kirk, D. and Hwu, W.: 'Programming massively parallel processors - A hands-on approach', 2nd Edition, Morgan Kaufman Publisher, 2013 [2] Konstantaras, A., Valianatos, F., Varley, M.R. and Makris, J.P.: 'Soft-Computing Modelling of Seismicity in the Southern Hellenic Arc', Geoscience and Remote Sensing Letters, vol. 5 (3), pp. 323-327, 2008 [3] Papadakis, S. and
Rajab, Maher I
2011-11-01
Since the introduction of epiluminescence microscopy (ELM), image analysis tools have been extended to the field of dermatology, in an attempt to algorithmically reproduce clinical evaluation. Accurate image segmentation of skin lesions is one of the key steps for useful, early and non-invasive diagnosis of coetaneous melanomas. This paper proposes two image segmentation algorithms based on frequency domain processing and k-means clustering/fuzzy k-means clustering. The two methods are capable of segmenting and extracting the true border that reveals the global structure irregularity (indentations and protrusions), which may suggest excessive cell growth or regression of a melanoma. As a pre-processing step, Fourier low-pass filtering is applied to reduce the surrounding noise in a skin lesion image. A quantitative comparison of the techniques is enabled by the use of synthetic skin lesion images that model lesions covered with hair to which Gaussian noise is added. The proposed techniques are also compared with an established optimal-based thresholding skin-segmentation method. It is demonstrated that for lesions with a range of different border irregularity properties, the k-means clustering and fuzzy k-means clustering segmentation methods provide the best performance over a range of signal to noise ratios. The proposed segmentation techniques are also demonstrated to have similar performance when tested on real skin lesions representing high-resolution ELM images. This study suggests that the segmentation results obtained using a combination of low-pass frequency filtering and k-means or fuzzy k-means clustering are superior to the result that would be obtained by using k-means or fuzzy k-means clustering segmentation methods alone. © 2011 John Wiley & Sons A/S.
Ortiz, Juan F; Rokas, Antonis
2017-01-01
Closely spaced clusters of tandemly duplicated genes (CTDGs) contribute to the diversity of many phenotypes, including chemosensation, snake venom, and animal body plans. CTDGs have traditionally been identified subjectively as genomic neighborhoods containing several gene duplicates in close proximity; however, CTDGs are often highly variable with respect to gene number, intergenic distance, and synteny. This lack of formal definition hampers the study of CTDG evolutionary dynamics and the discovery of novel CTDGs in the exponentially growing body of genomic data. To address this gap, we developed a novel homology-based algorithm, CTDGFinder, which formalizes and automates the identification of CTDGs by examining the physical distribution of individual members of families of duplicated genes across chromosomes. Application of CTDGFinder accurately identified CTDGs for many well-known gene clusters (e.g., Hox and beta-globin gene clusters) in the human, mouse and 20 other mammalian genomes. Differences between previously annotated gene clusters and our inferred CTDGs were due to the exclusion of nonhomologs that have historically been considered parts of specific gene clusters, the inclusion or absence of genes between the CTDGs and their corresponding gene clusters, and the splitting of certain gene clusters into distinct CTDGs. Examination of human genes showing tissue-specific enhancement of their expression by CTDGFinder identified members of several well-known gene clusters (e.g., cytochrome P450s and olfactory receptors) and revealed that they were unequally distributed across tissues. By formalizing and automating CTDG identification, CTDGFinder will facilitate understanding of CTDG evolutionary dynamics, their functional implications, and how they are associated with phenotypic diversity. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e
Arimbi, Mentari Dian; Bustamam, Alhadi; Lestari, Dian
2017-03-01
Data clustering can be executed through partition or hierarchical method for many types of data including DNA sequences. Both clustering methods can be combined by processing partition algorithm in the first level and hierarchical in the second level, called hybrid clustering. In the partition phase some popular methods such as PAM, K-means, or Fuzzy c-means methods could be applied. In this study we selected partitioning around medoids (PAM) in our partition stage. Furthermore, following the partition algorithm, in hierarchical stage we applied divisive analysis algorithm (DIANA) in order to have more specific clusters and sub clusters structures. The number of main clusters is determined using Davies Bouldin Index (DBI) value. We choose the optimal number of clusters if the results minimize the DBI value. In this work, we conduct the clustering on 1252 HPV DNA sequences data from GenBank. The characteristic extraction is initially performed, followed by normalizing and genetic distance calculation using Euclidean distance. In our implementation, we used the hybrid PAM and DIANA using the R open source programming tool. In our results, we obtained 3 main clusters with average DBI value is 0.979, using PAM in the first stage. After executing DIANA in the second stage, we obtained 4 sub clusters for Cluster-1, 9 sub clusters for Cluster-2 and 2 sub clusters in Cluster-3, with the BDI value 0.972, 0.771, and 0.768 for each main cluster respectively. Since the second stage produce lower DBI value compare to the DBI value in the first stage, we conclude that this hybrid approach can improve the accuracy of our clustering results.
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Junhai Luo
2017-06-01
Full Text Available With the development of communication technology, the demand for location-based services is growing rapidly. This paper presents an algorithm for indoor localization based on Received Signal Strength (RSS, which is collected from Access Points (APs. The proposed localization algorithm contains the offline information acquisition phase and online positioning phase. Firstly, the AP selection algorithm is reviewed and improved based on the stability of signals to remove useless AP; secondly, Kernel Principal Component Analysis (KPCA is analyzed and used to remove the data redundancy and maintain useful characteristics for nonlinear feature extraction; thirdly, the Affinity Propagation Clustering (APC algorithm utilizes RSS values to classify data samples and narrow the positioning range. In the online positioning phase, the classified data will be matched with the testing data to determine the position area, and the Maximum Likelihood (ML estimate will be employed for precise positioning. Eventually, the proposed algorithm is implemented in a real-world environment for performance evaluation. Experimental results demonstrate that the proposed algorithm improves the accuracy and computational complexity.
Luo, Junhai; Fu, Liang
2017-06-09
With the development of communication technology, the demand for location-based services is growing rapidly. This paper presents an algorithm for indoor localization based on Received Signal Strength (RSS), which is collected from Access Points (APs). The proposed localization algorithm contains the offline information acquisition phase and online positioning phase. Firstly, the AP selection algorithm is reviewed and improved based on the stability of signals to remove useless AP; secondly, Kernel Principal Component Analysis (KPCA) is analyzed and used to remove the data redundancy and maintain useful characteristics for nonlinear feature extraction; thirdly, the Affinity Propagation Clustering (APC) algorithm utilizes RSS values to classify data samples and narrow the positioning range. In the online positioning phase, the classified data will be matched with the testing data to determine the position area, and the Maximum Likelihood (ML) estimate will be employed for precise positioning. Eventually, the proposed algorithm is implemented in a real-world environment for performance evaluation. Experimental results demonstrate that the proposed algorithm improves the accuracy and computational complexity.
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Yongwei Zhang
2017-01-01
Full Text Available In order to solve the problem of difficulty in determining the threshold in spectrum sensing technologies based on the random matrix theory, a spectrum sensing method based on clustering algorithm and signal feature is proposed for Cognitive Wireless Multimedia Sensor Networks. Firstly, the wireless communication signal features are obtained according to the sampling signal covariance matrix. Then, the clustering algorithm is used to classify and test the signal features. Different signal features and clustering algorithms are compared in this paper. The experimental results show that the proposed method has better sensing performance.
A Replacement Algorithm of Non-Maximum Suppression Base on Graph Clustering
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Zhao Xin
2017-01-01
Full Text Available Non-maximum suppression is an important step in many object detection and object counting algorithms. In contrast with the extensive studies of object detection, NMS method has not caused too much attention. Although traditional NMS method has demonstrated promising performance in detection tasks, we observe that it is a hard decision approach, which only uses the confidential scores and Intersection-over-Unions (IoUs to discard proposals. By this way, NMS method would keep many false proposals whose IoU with the ground truth proposal is smaller than the threshold, which indicates that NMS may not suitable for counting the object number in images. To eliminate the limitation on object counting task, we propose a novel algorithm base on graph clustering to replace the NMS method in this paper. Experiments on faster-rcnn and SSD show that our algorithm achieves better performance than that of NMS on the object counting task.
Business and Social Behaviour Intelligence Analysis Using PSO
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Vinay S Bhaskar
2014-06-01
Full Text Available The goal of this paper is to elaborate swarm intelligence for business intelligence decision making and the business rules management improvement. The paper introduces the decision making model which is based on the application of Artiﬁcial Neural Networks (ANNs and Particle Swarm Optimization (PSO algorithm. Essentially the business spatial data illustrate the group behaviors. The swarm optimization, which is highly influenced by the behavior of creature, performs in group. The Spatial data is defined as data that is represented by 2D or 3D images. SQL Server supports only 2D images till now. As we know that location is an essential part of any organizational data as well as business data: enterprises maintain customer address lists, own property, ship goods from and to warehouses, manage transport flows among their workforce, and perform many other activities. By means to say a lot of spatial data is used and processed by enterprises, organizations and other bodies in order to make the things more visible and self-descriptive. From the experiments, we found that PSO is can facilitate the intelligence in social and business behaviour
A PSO Driven Intelligent Model Updating and Parameter Identification Scheme for Cable-Damper System
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Danhui Dan
2015-01-01
Full Text Available The precise measurement of the cable force is very important for monitoring and evaluating the operation status of cable structures such as cable-stayed bridges. The cable system should be installed with lateral dampers to reduce the vibration, which affects the precise measurement of the cable force and other cable parameters. This paper suggests a cable model updating calculation scheme driven by the particle swarm optimization (PSO algorithm. By establishing a finite element model considering the static geometric nonlinearity and stress-stiffening effect firstly, an automatically finite element method model updating powered by PSO algorithm is proposed, with the aims to identify the cable force and relevant parameters of cable-damper system precisely. Both numerical case studies and full-scale cable tests indicated that, after two rounds of updating process, the algorithm can accurately identify the cable force, moment of inertia, and damping coefficient of the cable-damper system.
A new concept of wildland-urban interface based on city clustering algorithm
Kanevski, M.; Champendal, A.; Vega Orozco, C.; Tonini, M.; Conedera, M.
2012-04-01
Wildland-Urban-Interface (WUI) is a widely used term in the context of wild and forest fires to indicate areas where human infrastructures interact with wildland/forest areas. Many complex problems are associated to the WUI; but the most relevant ones are those related to forest fire hazard and management in dense populated areas where fire regime is dominated by anthropogenic-induced ignition fires. This coexistence enhances both anthropogenic-ignition sources and flammable fuels. Furthermore, the growing trend of the WUI and global change effects may even worsening the situation in the near future. Therefore, many studies are dedicated to the WUI problem, focusing on refinement of its definition, development of mapping methods, implementation of measures into specific fire management plans and the validation of the proposed approaches. The present study introduces a new concept of WUI based on city clustering algorithm (CCA) introduced in Rosenfeld et al., 2008. CCA was proposed as an automatic tool for studying the definition of cities and their distribution. The algorithm uses demographic data - either on a regular or non-regular grid in space - where a city (urban zone) is detected as a cluster of connected populated cells with maximal size. In the present study the CCA is proposed as a tool to develop a new concept of population dynamic analysis crucial to define and to localise WUI. The real case study is based on demographic/census data - organised in a regular grid with a resolution of 100 m and the forest fire ignition points database from canton Ticino, Switzerland. By changing spatial scales of demographic cells the relationships between urban zones (demographic clusters) and forest fire events were statistically analyzed. Corresponding scaling laws were used to understand the interaction between urban zones and forest fires. The first results are good and indicate that the method can be applied to define WUI in an innovative way. Keywords: forest fires
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Alfonso Alzate Gómez
2010-06-01
Full Text Available This document uses particle swarm optimization (PSO for determining the parameters of induction motor. The error between the measured actual stator current output of an induction motor and its model is used as the criteria to correct the required parameters. Digital simulations no-load operations are used to identify the parameters. A comparison of two variants of the PSO algorithm (local PSO and global PSO is used to verify the efficiency of each one and computational time is determined.Finally, the parameter identification sheme shown is implemented.
An Efficient MapReduce-Based Parallel Clustering Algorithm for Distributed Traffic Subarea Division
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Dawen Xia
2015-01-01
Full Text Available Traffic subarea division is vital for traffic system management and traffic network analysis in intelligent transportation systems (ITSs. Since existing methods may not be suitable for big traffic data processing, this paper presents a MapReduce-based Parallel Three-Phase K-Means (Par3PKM algorithm for solving traffic subarea division problem on a widely adopted Hadoop distributed computing platform. Specifically, we first modify the distance metric and initialization strategy of K-Means and then employ a MapReduce paradigm to redesign the optimized K-Means algorithm for parallel clustering of large-scale taxi trajectories. Moreover, we propose a boundary identifying method to connect the borders of clustering results for each cluster. Finally, we divide traffic subarea of Beijing based on real-world trajectory data sets generated by 12,000 taxis in a period of one month using the proposed approach. Experimental evaluation results indicate that when compared with K-Means, Par2PK-Means, and ParCLARA, Par3PKM achieves higher efficiency, more accuracy, and better scalability and can effectively divide traffic subarea with big taxi trajectory data.
Clustering of tethered satellite system simulation data by an adaptive neuro-fuzzy algorithm
Mitra, Sunanda; Pemmaraju, Surya
1992-01-01
Recent developments in neuro-fuzzy systems indicate that the concepts of adaptive pattern recognition, when used to identify appropriate control actions corresponding to clusters of patterns representing system states in dynamic nonlinear control systems, may result in innovative designs. A modular, unsupervised neural network architecture, in which fuzzy learning rules have been embedded is used for on-line identification of similar states. The architecture and control rules involved in Adaptive Fuzzy Leader Clustering (AFLC) allow this system to be incorporated in control systems for identification of system states corresponding to specific control actions. We have used this algorithm to cluster the simulation data of Tethered Satellite System (TSS) to estimate the range of delta voltages necessary to maintain the desired length rate of the tether. The AFLC algorithm is capable of on-line estimation of the appropriate control voltages from the corresponding length error and length rate error without a priori knowledge of their membership functions and familarity with the behavior of the Tethered Satellite System.
Text grouping in patent analysis using adaptive K-means clustering algorithm
Shanie, Tiara; Suprijadi, Jadi; Zulhanif
2017-03-01
Patents are one of the Intellectual Property. Analyzing patent is one requirement in knowing well the development of technology in each country and in the world now. This study uses the patent document coming from the Espacenet server about Green Tea. Patent documents related to the technology in the field of tea is still widespread, so it will be difficult for users to information retrieval (IR). Therefore, it is necessary efforts to categorize documents in a specific group of related terms contained therein. This study uses titles patent text data with the proposed Green Tea in Statistical Text Mining methods consists of two phases: data preparation and data analysis stage. The data preparation phase uses Text Mining methods and data analysis stage is done by statistics. Statistical analysis in this study using a cluster analysis algorithm, the Adaptive K-Means Clustering Algorithm. Results from this study showed that based on the maximum value Silhouette, generate 87 clusters associated fifteen terms therein that can be utilized in the process of information retrieval needs.
A Network-Based Algorithm for Clustering Multivariate Repeated Measures Data
Koslovsky, Matthew; Arellano, John; Schaefer, Caroline; Feiveson, Alan; Young, Millennia; Lee, Stuart
2017-01-01
The National Aeronautics and Space Administration (NASA) Astronaut Corps is a unique occupational cohort for which vast amounts of measures data have been collected repeatedly in research or operational studies pre-, in-, and post-flight, as well as during multiple clinical care visits. In exploratory analyses aimed at generating hypotheses regarding physiological changes associated with spaceflight exposure, such as impaired vision, it is of interest to identify anomalies and trends across these expansive datasets. Multivariate clustering algorithms for repeated measures data may help parse the data to identify homogeneous groups of astronauts that have higher risks for a particular physiological change. However, available clustering methods may not be able to accommodate the complex data structures found in NASA data, since the methods often rely on strict model assumptions, require equally-spaced and balanced assessment times, cannot accommodate missing data or differing time scales across variables, and cannot process continuous and discrete data simultaneously. To fill this gap, we propose a network-based, multivariate clustering algorithm for repeated measures data that can be tailored to fit various research settings. Using simulated data, we demonstrate how our method can be used to identify patterns in complex data structures found in practice.
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Xiaochen Zhang
2017-01-01
Full Text Available To diagnose rotating machinery fault for imbalanced data, a method based on fast clustering algorithm (FCA and support vector machine (SVM was proposed. Combined with variational mode decomposition (VMD and principal component analysis (PCA, sensitive features of the rotating machinery fault were obtained and constituted the imbalanced fault sample set. Next, a fast clustering algorithm was adopted to reduce the number of the majority data from the imbalanced fault sample set. Consequently, the balanced fault sample set consisted of the clustered data and the minority data from the imbalanced fault sample set. After that, SVM was trained with the balanced fault sample set and tested with the imbalanced fault sample set so the fault diagnosis model of the rotating machinery could be obtained. Finally, the gearbox fault data set and the rolling bearing fault data set were adopted to test the fault diagnosis model. The experimental results showed that the fault diagnosis model could effectively diagnose the rotating machinery fault for imbalanced data.
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Fang Huang
2017-12-01
Full Text Available Density-based spatial clustering of applications with noise (DBSCAN is a density-based clustering algorithm that has the characteristics of being able to discover clusters of any shape, effectively distinguishing noise points and naturally supporting spatial databases. DBSCAN has been widely used in the field of spatial data mining. This paper studies the parallelization design and realization of the DBSCAN algorithm based on the Spark platform, and solves the following problems that arise when computing macro data: the requirement of a great deal of calculation using the single-node algorithm; the low level of resource-utilization with the multi-node algorithm; the large time consumption; and the lack of instantaneity. The experimental results indicate that the proposed parallel algorithm design is able to achieve more stable speedup at an increased involved spatial data scale.
Clustering and Genetic Algorithm Based Hybrid Flowshop Scheduling with Multiple Operations
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Yingfeng Zhang
2014-01-01
Full Text Available This research is motivated by a flowshop scheduling problem of our collaborative manufacturing company for aeronautic products. The heat-treatment stage (HTS and precision forging stage (PFS of the case are selected as a two-stage hybrid flowshop system. In HTS, there are four parallel machines and each machine can process a batch of jobs simultaneously. In PFS, there are two machines. Each machine can install any module of the four modules for processing the workpeices with different sizes. The problem is characterized by many constraints, such as batching operation, blocking environment, and setup time and working time limitations of modules, and so forth. In order to deal with the above special characteristics, the clustering and genetic algorithm is used to calculate the good solution for the two-stage hybrid flowshop problem. The clustering is used to group the jobs according to the processing ranges of the different modules of PFS. The genetic algorithm is used to schedule the optimal sequence of the grouped jobs for the HTS and PFS. Finally, a case study is used to demonstrate the efficiency and effectiveness of the designed genetic algorithm.
An improved scheduling algorithm for 3D cluster rendering with platform LSF
Xu, Wenli; Zhu, Yi; Zhang, Liping
2013-10-01
High-quality photorealistic rendering of 3D modeling needs powerful computing systems. On this demand highly efficient management of cluster resources develops fast to exert advantages. This paper is absorbed in the aim of how to improve the efficiency of 3D rendering tasks in cluster. It focuses research on a dynamic feedback load balance (DFLB) algorithm, the work principle of load sharing facility (LSF) and optimization of external scheduler plug-in. The algorithm can be applied into match and allocation phase of a scheduling cycle. Candidate hosts is prepared in sequence in match phase. And the scheduler makes allocation decisions for each job in allocation phase. With the dynamic mechanism, new weight is assigned to each candidate host for rearrangement. The most suitable one will be dispatched for rendering. A new plugin module of this algorithm has been designed and integrated into the internal scheduler. Simulation experiments demonstrate the ability of improved plugin module is superior to the default one for rendering tasks. It can help avoid load imbalance among servers, increase system throughput and improve system utilization.
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Abdul Nasir Aimi Salihah
2018-01-01
Full Text Available Malaria continues to be one of the leading causes of death in the world, despite the massive efforts put forth by World Health Organization (WHO in eradicating it, worldwide. Efficient control and proper treatment of this disease requires early detection and accurate diagnosis due to the large number of cases reported yearly. To achieve this aim, this paper proposes a malaria parasite segmentation approach via cascaded clustering algorithms to automate the malaria diagnosis process. The comparisons among the cascaded clustering algorithms have been made by considering the accuracy, sensitivity and specificity of the segmented malaria images. Based on the qualitative and quantitative findings, the results show that by using the final centres that have been generated by enhanced k-means (EKM clustering as the initial centres for fuzzy c-means (FCM clustering, has led to the production of good segmented malaria image. The proposed cascaded EKM and FCM clustering has successfully segmented 100 malaria images of Plasmodium Vivax species with average segmentation accuracy, sensitivity and specificity values of 99.22%, 88.84% and 99.56%, respectively. Therefore, the EKM algorithm has given the best performance compared to k-means (KM and moving k-means (MKM algorithms when all the three clustering algorithms are cascaded with FCM algorithm.
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Wenke Zang
2017-10-01
Full Text Available MRI segmentation is critically important for clinical study and diagnosis. Existing methods based on soft clustering have several drawbacks, including low accuracy in the presence of image noise and artifacts, and high computational cost. In this paper, we introduce a new formulation of the MRI segmentation problem as a kernel-based intuitionistic fuzzy C-means (KIFCM clustering problem and propose a new DNA-based genetic algorithm to obtain the optimal KIFCM clustering. While this algorithm searches the solution space for the optimal model parameters, it also obtains the optimal clustering, therefore the optimal MRI segmentation. We perform empirical study by comparing our method with six state-of-the-art soft clustering methods using a set of UCI (University of California, Irvine datasets and a set of synthetic and clinic MRI datasets. The preliminary results show that our method outperforms other methods in both the clustering metrics and the computational efficiency.
Xu, Beijie; Recker, Mimi; Qi, Xiaojun; Flann, Nicholas; Ye, Lei
2013-01-01
This article examines clustering as an educational data mining method. In particular, two clustering algorithms, the widely used K-means and the model-based Latent Class Analysis, are compared, using usage data from an educational digital library service, the Instructional Architect (IA.usu.edu). Using a multi-faceted approach and multiple data…
PSO Based Optimization of Testing and Maintenance Cost in NPPs
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Qiang Chou
2014-01-01
Full Text Available Testing and maintenance activities of safety equipment have drawn much attention in Nuclear Power Plant (NPP to risk and cost control. The testing and maintenance activities are often implemented in compliance with the technical specification and maintenance requirements. Technical specification and maintenance-related parameters, that is, allowed outage time (AOT, maintenance period and duration, and so forth, in NPP are associated with controlling risk level and operating cost which need to be minimized. The above problems can be formulated by a constrained multiobjective optimization model, which is widely used in many other engineering problems. Particle swarm optimizations (PSOs have proved their capability to solve these kinds of problems. In this paper, we adopt PSO as an optimizer to optimize the multiobjective optimization problem by iteratively trying to improve a candidate solution with regard to a given measure of quality. Numerical results have demonstrated the efficiency of our proposed algorithm.
Miura, Shinichi
2007-03-21
In this paper, we present a path integral hybrid Monte Carlo (PIHMC) method for rotating molecules in quantum fluids. This is an extension of our PIHMC for correlated Bose fluids [S. Miura and J. Tanaka, J. Chem. Phys. 120, 2160 (2004)] to handle the molecular rotation quantum mechanically. A novel technique referred to be an effective potential of quantum rotation is introduced to incorporate the rotational degree of freedom in the path integral molecular dynamics or hybrid Monte Carlo algorithm. For a permutation move to satisfy Bose statistics, we devise a multilevel Metropolis method combined with a configurational-bias technique for efficiently sampling the permutation and the associated atomic coordinates. Then, we have applied the PIHMC to a helium-4 cluster doped with a carbonyl sulfide molecule. The effects of the quantum rotation on the solvation structure and energetics were examined. Translational and rotational fluctuations of the dopant in the superfluid cluster were also analyzed.
Operating room scheduling using hybrid clustering priority rule and genetic algorithm
Santoso, Linda Wahyuni; Sinawan, Aisyah Ashrinawati; Wijaya, Andi Rahadiyan; Sudiarso, Andi; Masruroh, Nur Aini; Herliansyah, Muhammad Kusumawan
2017-11-01
Operating room is a bottleneck resource in most hospitals so that operating room scheduling system will influence the whole performance of the hospitals. This research develops a mathematical model of operating room scheduling for elective patients which considers patient priority with limit number of surgeons, operating rooms, and nurse team. Clustering analysis was conducted to the data of surgery durations using hierarchical and non-hierarchical methods. The priority rule of each resulting cluster was determined using Shortest Processing Time method. Genetic Algorithm was used to generate daily operating room schedule which resulted in the lowest values of patient waiting time and nurse overtime. The computational results show that this proposed model reduced patient waiting time by approximately 32.22% and nurse overtime by approximately 32.74% when compared to actual schedule.
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Xite Wang
2017-01-01
Full Text Available Outlier detection is an important data mining task, whose target is to find the abnormal or atypical objects from a given dataset. The techniques for detecting outliers have a lot of applications, such as credit card fraud detection and environment monitoring. Our previous work proposed the Cluster-Based (CB outlier and gave a centralized method using unsupervised extreme learning machines to compute CB outliers. In this paper, we propose a new distributed algorithm for the CB outlier detection (DACB. On the master node, we collect a small number of points from the slave nodes to obtain a threshold. On each slave node, we design a new filtering method that can use the threshold to efficiently speed up the computation. Furthermore, we also propose a ranking method to optimize the order of cluster scanning. At last, the effectiveness and efficiency of the proposed approaches are verified through a plenty of simulation experiments.
Luitel, Bipul; Venayagamoorthy, Ganesh Kumar
2010-06-01
Training a single simultaneous recurrent neural network (SRN) to learn all outputs of a multiple-input-multiple-output (MIMO) system is a difficult problem. A new training algorithm developed from combined concepts of swarm intelligence and quantum principles is presented. The training algorithm is called particle swarm optimization with quantum infusion (PSO-QI). To improve the effectiveness of learning, a two-step learning approach is introduced in the training. The objective of the learning in the first step is to find the optimal set of weights in the SRN considering all output errors. In the second step, the objective is to maximize the learning of each output dynamics by fine tuning the respective SRN output weights. To demonstrate the effectiveness of the PSO-QI training algorithm and the two-step learning approach, two examples of an SRN learning MIMO systems are presented. The first example is learning a benchmark MIMO system and the second one is the design of a wide area monitoring system for a multimachine power system. From the results, it is observed that SRNs can effectively learn MIMO systems when trained using the PSO-QI algorithm and the two-step learning approach. Copyright 2009 Elsevier Ltd. All rights reserved.
Clustering Multiple Sclerosis Subgroups with Multifractal Methods and Self-Organizing Map Algorithm
Karaca, Yeliz; Cattani, Carlo
Magnetic resonance imaging (MRI) is the most sensitive method to detect chronic nervous system diseases such as multiple sclerosis (MS). In this paper, Brownian motion Hölder regularity functions (polynomial, periodic (sine), exponential) for 2D image, such as multifractal methods were applied to MR brain images, aiming to easily identify distressed regions, in MS patients. With these regions, we have proposed an MS classification based on the multifractal method by using the Self-Organizing Map (SOM) algorithm. Thus, we obtained a cluster analysis by identifying pixels from distressed regions in MR images through multifractal methods and by diagnosing subgroups of MS patients through artificial neural networks.
CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
Ao, Sio-Iong
More than 6 million single nucleotide polymorphisms (SNPs) in the human genome have been genotyped by the HapMap project. Although only a pro portion of these SNPs are functional, all can be considered as candidate markers for indirect association studies to detect disease-related genetic variants. The complete screening of a gene or a chromosomal region is nevertheless an expensive undertak ing for association studies. A key strategy for improving the efficiency of association studies is to select a subset of informative SNPs, called tag SNPs, for analysis. In the chapter, hierarchical clustering algorithms have been proposed for efficient tag SNP selection.
Rasim; Junaeti, E.; Wirantika, R.
2018-01-01
Accurate forecasting for the sale of a product depends on the forecasting method used. The purpose of this research is to build motorcycle sales forecasting application using Fuzzy Time Series method combined with interval determination using automatic clustering algorithm. Forecasting is done using the sales data of motorcycle sales in the last ten years. Then the error rate of forecasting is measured using Means Percentage Error (MPE) and Means Absolute Percentage Error (MAPE). The results of forecasting in the one-year period obtained in this study are included in good accuracy.
Wang, Deguang; Han, Baochang; Huang, Ming
Computer forensics is the technology of applying computer technology to access, investigate and analysis the evidence of computer crime. It mainly include the process of determine and obtain digital evidence, analyze and take data, file and submit result. And the data analysis is the key link of computer forensics. As the complexity of real data and the characteristics of fuzzy, evidence analysis has been difficult to obtain the desired results. This paper applies fuzzy c-means clustering algorithm based on particle swarm optimization (FCMP) in computer forensics, and it can be more satisfactory results.
Optimal Machine Tools Selection Using Interval-Valued Data FCM Clustering Algorithm
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Yupeng Xin
2014-01-01
Full Text Available Machine tool selection directly affects production rates, accuracy, and flexibility. In order to quickly and accurately select the appropriate machine tools in machining process planning, this paper proposes an optimal machine tools selection method based on interval-valued data fuzzy C-means (FCM clustering algorithm. We define the machining capability meta (MAE as the smallest unit to describe machining capacity of machine tools and establish MAE library based on the MAE information model. According to the manufacturing process requirements, the MAEs can be queried from MAE library. Subsequently, interval-valued data FCM algorithm is used to select the appropriate machine tools for manufacturing process. Through computing matching degree between manufacturing process machining constraints and MAEs, we get the most appropriate MAEs and the corresponding machine tools. Finally, a case study of an exhaust duct part of the aeroengine is presented to demonstrate the applicability of the proposed method.
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Simon Fong
2012-01-01
Full Text Available Voice biometrics has a long history in biosecurity applications such as verification and identification based on characteristics of the human voice. The other application called voice classification which has its important role in grouping unlabelled voice samples, however, has not been widely studied in research. Lately voice classification is found useful in phone monitoring, classifying speakers’ gender, ethnicity and emotion states, and so forth. In this paper, a collection of computational algorithms are proposed to support voice classification; the algorithms are a combination of hierarchical clustering, dynamic time wrap transform, discrete wavelet transform, and decision tree. The proposed algorithms are relatively more transparent and interpretable than the existing ones, though many techniques such as Artificial Neural Networks, Support Vector Machine, and Hidden Markov Model (which inherently function like a black box have been applied for voice verification and voice identification. Two datasets, one that is generated synthetically and the other one empirically collected from past voice recognition experiment, are used to verify and demonstrate the effectiveness of our proposed voice classification algorithm.
Mustapha, Ibrahim; Mohd Ali, Borhanuddin; Rasid, Mohd Fadlee A; Sali, Aduwati; Mohamad, Hafizal
2015-08-13
It is well-known that clustering partitions network into logical groups of nodes in order to achieve energy efficiency and to enhance dynamic channel access in cognitive radio through cooperative sensing. While the topic of energy efficiency has been well investigated in conventional wireless sensor networks, the latter has not been extensively explored. In this paper, we propose a reinforcement learning-based spectrum-aware clustering algorithm that allows a member node to learn the energy and cooperative sensing costs for neighboring clusters to achieve an optimal solution. Each member node selects an optimal cluster that satisfies pairwise constraints, minimizes network energy consumption and enhances channel sensing performance through an exploration technique. We first model the network energy consumption and then determine the optimal number of clusters for the network. The problem of selecting an optimal cluster is formulated as a Markov Decision Process (MDP) in the algorithm and the obtained simulation results show convergence, learning and adaptability of the algorithm to dynamic environment towards achieving an optimal solution. Performance comparisons of our algorithm with the Groupwise Spectrum Aware (GWSA)-based algorithm in terms of Sum of Square Error (SSE), complexity, network energy consumption and probability of detection indicate improved performance from the proposed approach. The results further reveal that an energy savings of 9% and a significant Primary User (PU) detection improvement can be achieved with the proposed approach.
Mustapha, Ibrahim; Ali, Borhanuddin Mohd; Rasid, Mohd Fadlee A.; Sali, Aduwati; Mohamad, Hafizal
2015-01-01
It is well-known that clustering partitions network into logical groups of nodes in order to achieve energy efficiency and to enhance dynamic channel access in cognitive radio through cooperative sensing. While the topic of energy efficiency has been well investigated in conventional wireless sensor networks, the latter has not been extensively explored. In this paper, we propose a reinforcement learning-based spectrum-aware clustering algorithm that allows a member node to learn the energy and cooperative sensing costs for neighboring clusters to achieve an optimal solution. Each member node selects an optimal cluster that satisfies pairwise constraints, minimizes network energy consumption and enhances channel sensing performance through an exploration technique. We first model the network energy consumption and then determine the optimal number of clusters for the network. The problem of selecting an optimal cluster is formulated as a Markov Decision Process (MDP) in the algorithm and the obtained simulation results show convergence, learning and adaptability of the algorithm to dynamic environment towards achieving an optimal solution. Performance comparisons of our algorithm with the Groupwise Spectrum Aware (GWSA)-based algorithm in terms of Sum of Square Error (SSE), complexity, network energy consumption and probability of detection indicate improved performance from the proposed approach. The results further reveal that an energy savings of 9% and a significant Primary User (PU) detection improvement can be achieved with the proposed approach. PMID:26287191
Ángel Cobo; Rocío Rocha
2011-01-01
This paper presents a document representation strategy and a bio-inspired algorithm to cluster multilingual collections of documents in the field of economics and business. The proposed approach allows the user to identify groups of related economics documents written in Spanish and English using techniques inspired on clustering and sorting behaviours observed in some types of ants. In order to obtain a language independent vector representation of each document two multilingual resources ar...
Gao, Ying; Wkram, Chris Hadri; Duan, Jiajie; Chou, Jarong
2015-12-10
In order to prolong the network lifetime, energy-efficient protocols adapted to the features of wireless sensor networks should be used. This paper explores in depth the nature of heterogeneous wireless sensor networks, and finally proposes an algorithm to address the problem of finding an effective pathway for heterogeneous clustering energy. The proposed algorithm implements cluster head selection according to the degree of energy attenuation during the network's running and the degree of candidate nodes' effective coverage on the whole network, so as to obtain an even energy consumption over the whole network for the situation with high degree of coverage. Simulation results show that the proposed clustering protocol has better adaptability to heterogeneous environments than existing clustering algorithms in prolonging the network lifetime.
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Ying Gao
2015-12-01
Full Text Available In order to prolong the network lifetime, energy-efficient protocols adapted to the features of wireless sensor networks should be used. This paper explores in depth the nature of heterogeneous wireless sensor networks, and finally proposes an algorithm to address the problem of finding an effective pathway for heterogeneous clustering energy. The proposed algorithm implements cluster head selection according to the degree of energy attenuation during the network’s running and the degree of candidate nodes’ effective coverage on the whole network, so as to obtain an even energy consumption over the whole network for the situation with high degree of coverage. Simulation results show that the proposed clustering protocol has better adaptability to heterogeneous environments than existing clustering algorithms in prolonging the network lifetime.
Ebrahimi, A.; Pahlavani, P.; Masoumi, Z.
2017-09-01
Traffic monitoring and managing in urban intelligent transportation systems (ITS) can be carried out based on vehicular sensor networks. In a vehicular sensor network, vehicles equipped with sensors such as GPS, can act as mobile sensors for sensing the urban traffic and sending the reports to a traffic monitoring center (TMC) for traffic estimation. The energy consumption by the sensor nodes is a main problem in the wireless sensor networks (WSNs); moreover, it is the most important feature in designing these networks. Clustering the sensor nodes is considered as an effective solution to reduce the energy consumption of WSNs. Each cluster should have a Cluster Head (CH), and a number of nodes located within its supervision area. The cluster heads are responsible for gathering and aggregating the information of clusters. Then, it transmits the information to the data collection center. Hence, the use of clustering decreases the volume of transmitting information, and, consequently, reduces the energy consumption of network. In this paper, Fuzzy C-Means (FCM) and Fuzzy Subtractive algorithms are employed to cluster sensors and investigate their performance on the energy consumption of sensors. It can be seen that the FCM algorithm and Fuzzy Subtractive have been reduced energy consumption of vehicle sensors up to 90.68% and 92.18%, respectively. Comparing the performance of the algorithms implies the 1.5 percent improvement in Fuzzy Subtractive algorithm in comparison.
Schuetter, Jared Michael
Excavating cairns in southern Arabia is a way for anthropologists to understand which factors led ancient settlers to transition from a pastoral lifestyle and tribal narrative to the formation of states that exist today. Locating these monuments has traditionally been done in the field, relying on eyewitness reports and costly searches through the arid landscape. In this thesis, an algorithm for automatically detecting cairns in satellite imagery is presented. The algorithm uses a set of filters in a window based approach to eliminate background pixels and other objects that do not look like cairns. The resulting set of detected objects constitutes fewer than 0.001% of the pixels in the satellite image, and contains the objects that look the most like cairns in imagery. When a training set of cairns is available, a further reduction of this set of objects can take place, along with a likelihood-based ranking system. To aid in cairn detection, the satellite image is also clustered to determine land-form classes that tend to be consistent with the presence of cairns. Due to the large number of pixels in the image, a subsample spectral clustering algorithm called "Multiple Sample Data Spectroscopic clustering" is used. This multiple sample clustering procedure is motivated by perturbation studies on single sample spectral algorithms. The studies, presented in this thesis, show that sampling variability in the single sample approach can cause an unsatisfactory level of instability in clustering results. The multiple sample data spectroscopic clustering algorithm is intended to stabilize this perturbation by combining information from different samples. While sampling variability is still present, the use of multiple samples mitigates its effect on cluster results. Finally, a step-through of the cairn detection algorithm and satellite image clustering are given for an image in the Hadramawt region of Yemen. The top ranked detected objects are presented, and a discussion
Safari, Amin
2013-01-01
The problem of coordinated tuning stabilizers in multi-machine power systems is formulated here as a sequence of optimization problems. The design problem of stabilizers is converted to a nonlinear optimization problem with a multi-objective fitness function. The proposed method employs particle swarm optimization (PSO), an algorithm to search for optimal parameter settings of a widely used conventional fixed-structure lead-lag power system stabilizers (CPSSs). One of the main advantages of t...
A Hybrid of Modified PSO and Local Search on a Multi-Robot Search System
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Mohammad Naim Rastgoo
2015-07-01
Full Text Available Particle swarm optimization (PSO, a new population-based algorithm, has recently been used on multi-robot systems. Although this algorithm is applied to solve many optimization problems as well as multi-robot systems, it has some drawbacks when it is applied on multi-robot search systems to find a target in a search space containing big static obstacles. One of these defects is premature convergence. This means that one of the properties of basic PSO is that when particles are spread in a search space, as time increases they tend to converge in a small area. This shortcoming is also evident on a multi-robot search system, particularly when there are big static obstacles in the search space that prevent the robots from finding the target easily; therefore, as time increases, based on this property they converge to a small area that may not contain the target and become entrapped in that area. Another shortcoming is that basic PSO cannot guarantee the global convergence of the algorithm. In other words, initially particles explore different areas, but in some cases they are not good at exploiting promising areas, which will increase the search time. This study proposes a method based on the particle swarm optimization (PSO technique on a multi-robot system to find a target in a search space containing big static obstacles. This method is not only able to overcome the premature convergence problem but also establishes an efficient balance between exploration and exploitation and guarantees global convergence, reducing the search time by combining with a local search method, such as A-star. To validate the effectiveness and usefulness of algorithms, a simulation environment has been developed for conducting simulation-based experiments in different scenarios and for reporting experimental results. These experimental results have demonstrated that the proposed method is able to overcome the premature convergence problem and guarantee global
KANTS: a stigmergic ant algorithm for cluster analysis and swarm art.
Fernandes, Carlos M; Mora, Antonio M; Merelo, Juan J; Rosa, Agostinho C
2014-06-01
KANTS is a swarm intelligence clustering algorithm inspired by the behavior of social insects. It uses stigmergy as a strategy for clustering large datasets and, as a result, displays a typical behavior of complex systems: self-organization and global patterns emerging from the local interaction of simple units. This paper introduces a simplified version of KANTS and describes recent experiments with the algorithm in the context of a contemporary artistic and scientific trend called swarm art, a type of generative art in which swarm intelligence systems are used to create artwork or ornamental objects. KANTS is used here for generating color drawings from the input data that represent real-world phenomena, such as electroencephalogram sleep data. However, the main proposal of this paper is an art project based on well-known abstract paintings, from which the chromatic values are extracted and used as input. Colors and shapes are therefore reorganized by KANTS, which generates its own interpretation of the original artworks. The project won the 2012 Evolutionary Art, Design, and Creativity Competition.
Saeed, Mohammad
2017-05-01
Systemic lupus erythematosus (SLE) is a complex disorder. Genetic association studies of complex disorders suffer from the following three major issues: phenotypic heterogeneity, false positive (type I error), and false negative (type II error) results. Hence, genes with low to moderate effects are missed in standard analyses, especially after statistical corrections. OASIS is a novel linkage disequilibrium clustering algorithm that can potentially address false positives and negatives in genome-wide association studies (GWAS) of complex disorders such as SLE. OASIS was applied to two SLE dbGAP GWAS datasets (6077 subjects; ∼0.75 million single-nucleotide polymorphisms). OASIS identified three known SLE genes viz. IFIH1, TNIP1, and CD44, not previously reported using these GWAS datasets. In addition, 22 novel loci for SLE were identified and the 5 SLE genes previously reported using these datasets were verified. OASIS methodology was validated using single-variant replication and gene-based analysis with GATES. This led to the verification of 60% of OASIS loci. New SLE genes that OASIS identified and were further verified include TNFAIP6, DNAJB3, TTF1, GRIN2B, MON2, LATS2, SNX6, RBFOX1, NCOA3, and CHAF1B. This study presents the OASIS algorithm, software, and the meta-analyses of two publicly available SLE GWAS datasets along with the novel SLE genes. Hence, OASIS is a novel linkage disequilibrium clustering method that can be universally applied to existing GWAS datasets for the identification of new genes.
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm.
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Daniel M de Brito
Full Text Available Genomic Islands (GIs are regions of bacterial genomes that are acquired from other organisms by the phenomenon of horizontal transfer. These regions are often responsible for many important acquired adaptations of the bacteria, with great impact on their evolution and behavior. Nevertheless, these adaptations are usually associated with pathogenicity, antibiotic resistance, degradation and metabolism. Identification of such regions is of medical and industrial interest. For this reason, different approaches for genomic islands prediction have been proposed. However, none of them are capable of predicting precisely the complete repertory of GIs in a genome. The difficulties arise due to the changes in performance of different algorithms in the face of the variety of nucleotide distribution in different species. In this paper, we present a novel method to predict GIs that is built upon mean shift clustering algorithm. It does not require any information regarding the number of clusters, and the bandwidth parameter is automatically calculated based on a heuristic approach. The method was implemented in a new user-friendly tool named MSGIP--Mean Shift Genomic Island Predictor. Genomes of bacteria with GIs discussed in other papers were used to evaluate the proposed method. The application of this tool revealed the same GIs predicted by other methods and also different novel unpredicted islands. A detailed investigation of the different features related to typical GI elements inserted in these new regions confirmed its effectiveness. Stand-alone and user-friendly versions for this new methodology are available at http://msgip.integrativebioinformatics.me.
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Tao Ma
2016-10-01
Full Text Available The development of intrusion detection systems (IDS that are adapted to allow routers and network defence systems to detect malicious network traffic disguised as network protocols or normal access is a critical challenge. This paper proposes a novel approach called SCDNN, which combines spectral clustering (SC and deep neural network (DNN algorithms. First, the dataset is divided into k subsets based on sample similarity using cluster centres, as in SC. Next, the distance between data points in a testing set and the training set is measured based on similarity features and is fed into the deep neural network algorithm for intrusion detection. Six KDD-Cup99 and NSL-KDD datasets and a sensor network dataset were employed to test the performance of the model. These experimental results indicate that the SCDNN classifier not only performs better than backpropagation neural network (BPNN, support vector machine (SVM, random forest (RF and Bayes tree models in detection accuracy and the types of abnormal attacks found. It also provides an effective tool of study and analysis of intrusion detection in large networks.
Ma, Tao; Wang, Fen; Cheng, Jianjun; Yu, Yang; Chen, Xiaoyun
2016-10-13
The development of intrusion detection systems (IDS) that are adapted to allow routers and network defence systems to detect malicious network traffic disguised as network protocols or normal access is a critical challenge. This paper proposes a novel approach called SCDNN, which combines spectral clustering (SC) and deep neural network (DNN) algorithms. First, the dataset is divided into k subsets based on sample similarity using cluster centres, as in SC. Next, the distance between data points in a testing set and the training set is measured based on similarity features and is fed into the deep neural network algorithm for intrusion detection. Six KDD-Cup99 and NSL-KDD datasets and a sensor network dataset were employed to test the performance of the model. These experimental results indicate that the SCDNN classifier not only performs better than backpropagation neural network (BPNN), support vector machine (SVM), random forest (RF) and Bayes tree models in detection accuracy and the types of abnormal attacks found. It also provides an effective tool of study and analysis of intrusion detection in large networks.
Yang, Yan-Pu; Chen, Deng-Kai; Gu, Rong; Gu, Yu-Feng; Yu, Sui-Huai
2016-01-01
Consumers' Kansei needs reflect their perception about a product and always consist of a large number of adjectives. Reducing the dimension complexity of these needs to extract primary words not only enables the target product to be explicitly positioned, but also provides a convenient design basis for designers engaging in design work. Accordingly, this study employs a numerical design structure matrix (NDSM) by parameterizing a conventional DSM and integrating genetic algorithms to find optimum Kansei clusters. A four-point scale method is applied to assign link weights of every two Kansei adjectives as values of cells when constructing an NDSM. Genetic algorithms are used to cluster the Kansei NDSM and find optimum clusters. Furthermore, the process of the proposed method is presented. The details of the proposed approach are illustrated using an example of electronic scooter for Kansei needs clustering. The case study reveals that the proposed method is promising for clustering Kansei needs adjectives in product emotional design.
Cahyaningrum, Rosalia D.; Bustamam, Alhadi; Siswantining, Titin
2017-03-01
Technology of microarray became one of the imperative tools in life science to observe the gene expression levels, one of which is the expression of the genes of people with carcinoma. Carcinoma is a cancer that forms in the epithelial tissue. These data can be analyzed such as the identification expressions hereditary gene and also build classifications that can be used to improve diagnosis of carcinoma. Microarray data usually served in large dimension that most methods require large computing time to do the grouping. Therefore, this study uses spectral clustering method which allows to work with any object for reduces dimension. Spectral clustering method is a method based on spectral decomposition of the matrix which is represented in the form of a graph. After the data dimensions are reduced, then the data are partitioned. One of the famous partition method is Partitioning Around Medoids (PAM) which is minimize the objective function with exchanges all the non-medoid points into medoid point iteratively until converge. Objectivity of this research is to implement methods spectral clustering and partitioning algorithm PAM to obtain groups of 7457 genes with carcinoma based on the similarity value. The result in this study is two groups of genes with carcinoma.
Particle Swarm Optimization (PSO) for Magnetotelluric (MT) 1D Inversion Modeling
Grandis, Hendra; Maulana, Yahya
2017-04-01
Particle Swarm Optimization (PSO) is one of nature-inspired optimization algorithms that adopts swarm (insects, school of fish, flock of birds etc.) behaviour in search for food or common target in a collaborative manner. The particles (or agents) in the swarm learn from their neighbours as well as themselves regarding the promising area in the search space. The information is then used to update their position in order to reach the target. The search algorithm of a particle is dictated by the best position of that particle during the process (individual learning term) and the best particle in its surroundings (social learning term) at a particular iteration. In terms of optimization, the particles are models defined by their parameters, while the promising area in the model space is characterized by a low misfit associated with optimum models. Being a global search approach, PSO is suitable for nonlinear inverse problem resolution. The algorithm was applied to a simple minimization problem for illustration purpose. The application of PSO in geophysical inverse problem is demonstrated by inversion of synthetic magnetotelluric (MT) data associated with simple 1D models with satisfactory results in terms of model recovery as well as data misfit.
2D evaluation of spectral LIBS data derived from heterogeneous materials using cluster algorithm
Gottlieb, C.; Millar, S.; Grothe, S.; Wilsch, G.
2017-08-01
Laser-induced Breakdown Spectroscopy (LIBS) is capable of providing spatially resolved element maps in regard to the chemical composition of the sample. The evaluation of heterogeneous materials is often a challenging task, especially in the case of phase boundaries. In order to determine information about a certain phase of a material, the need for a method that offers an objective evaluation is necessary. This paper will introduce a cluster algorithm in the case of heterogeneous building materials (concrete) to separate the spectral information of non-relevant aggregates and cement matrix. In civil engineering, the information about the quantitative ingress of harmful species like Cl-, Na+ and SO42- is of great interest in the evaluation of the remaining lifetime of structures (Millar et al., 2015; Wilsch et al., 2005). These species trigger different damage processes such as the alkali-silica reaction (ASR) or the chloride-induced corrosion of the reinforcement. Therefore, a discrimination between the different phases, mainly cement matrix and aggregates, is highly important (Weritz et al., 2006). For the 2D evaluation, the expectation-maximization-algorithm (EM algorithm; Ester and Sander, 2000) has been tested for the application presented in this work. The method has been introduced and different figures of merit have been presented according to recommendations given in Haddad et al. (2014). Advantages of this method will be highlighted. After phase separation, non-relevant information can be excluded and only the wanted phase displayed. Using a set of samples with known and unknown composition, the EM-clustering method has been validated regarding to Gustavo González and Ángeles Herrador (2007).
Fuzzy Controlled Parallel PSO to Solving Large Practical Economic Dispatch
Mahdad, Belkacem; Srairi, Kamel; Bouktir, Tarek; Benbouzid, Mohamed
2010-01-01
International audience; This paper proposes a version of fuzzy controlled parallel particle swarm optimization approach based decomposed network (FCP-PSO) to solve large nonconvex economic dispatch problems. The proposed approach combines practical experience extracted from global database formulated in fuzzy rules to adjust dynamically the three parameters associated to PSO mechanism search. The adaptive PSO executed in parallel based in decomposed network procedure as a local search to expl...
Clustering-based energy-saving algorithm in ultra-dense network
Huang, Junwei; Zhou, Pengguang; Teng, Deyang; Zhang, Renchi; Xu, Hao
2017-06-01
In Ultra-dense Networks (UDN), dense deployment of low power small base stations will cause serious small cells interference and a large amount of energy consumption. The purpose of this paper is to explore the method of reducing small cells interference and energy saving system in UDN, and we innovatively propose a sleep-waking-active (SWA) scheme. The scheme decreases the user outage causing by failure to detect users’ service requests, shortens the opening time of active base stations directly switching to sleep mode; we further proposes a Vertex Surrounding Clustering(VSC) algorithm, which first colours the small cells with the most strongest interference and next extends to the adjacent small cells. VSC algorithm can use the least colour to stain the small cell, reduce the number of iterations and promote the efficiency of colouring. The simulation results show that SWA scheme can effectively improve the system Energy Efficiency (EE), the VSC algorithm can reduce the small cells interference and optimize the users’ Spectrum Efficiency (SE) and throughput.
Invaded cluster algorithm for critical properties of periodic and aperiodic planar Ising models
Energy Technology Data Exchange (ETDEWEB)
Redner, Oliver; Baake, Michael [Institut fuer Theoretische Physik, Universitaet Tuebingen, Tuebingen (Germany)
2000-04-28
We demonstrate that the invaded cluster algorithm, introduced by Machta et al (1995 Phys. Rev. Lett. 75 2792-5), is a fast and reliable tool for determining the critical temperature and the magnetic critical exponent of periodic and aperiodic ferromagnetic Ising models in two dimensions. The algorithm is shown to reproduce the known values of the critical temperature on various periodic and quasiperiodic graphs with an accuracy of more than three significant digits, but only modest computational effort. On two quasiperiodic graphs which were not investigated in this respect before, the 12-fold symmetric square-triangle tiling and the 10-fold symmetric Tuebingen triangle tiling, we determine the critical temperature. Furthermore, a generalization of the algorithm to non-identical coupling strengths is presented and applied to a class of Ising models on the Labyrinth tiling. For generic cases in which the heuristic Harris-Luck criterion predicts deviations from the Onsager universality class, we find a magnetic critical exponent different from the Onsager value. But notable exceptions to the criterion are found which consist not only of the exactly solvable cases, in agreement with a recent exact result, but also of the self-dual ones and maybe more. (author)
Invaded cluster algorithm for critical properties of periodic and aperiodic planar Ising models
Redner, Oliver; Baake, Michael
2000-04-01
We demonstrate that the invaded cluster algorithm, introduced by Machta et al (1995 Phys. Rev. Lett. 75 2792-5), is a fast and reliable tool for determining the critical temperature and the magnetic critical exponent of periodic and aperiodic ferromagnetic Ising models in two dimensions. The algorithm is shown to reproduce the known values of the critical temperature on various periodic and quasiperiodic graphs with an accuracy of more than three significant digits, but only modest computational effort. On two quasiperiodic graphs which were not investigated in this respect before, the 12-fold symmetric square-triangle tiling and the 10-fold symmetric Tübingen triangle tiling, we determine the critical temperature. Furthermore, a generalization of the algorithm to non-identical coupling strengths is presented and applied to a class of Ising models on the Labyrinth tiling. For generic cases in which the heuristic Harris-Luck criterion predicts deviations from the Onsager universality class, we find a magnetic critical exponent different from the Onsager value. But notable exceptions to the criterion are found which consist not only of the exactly solvable cases, in agreement with a recent exact result, but also of the self-dual ones and maybe more.
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Umarani Balakrishnan
2016-11-01
Full Text Available Recently, automatic diagnosis of diabetic retinopathy (DR from the retinal image is the most significant research topic in the medical applications. Diabetic macular edema (DME is the major reason for the loss of vision in patients suffering from DR. Early identification of the DR enables to prevent the vision loss and encourage diabetic control activities. Many techniques are developed to diagnose the DR. The major drawbacks of the existing techniques are low accuracy and high time complexity. To overcome these issues, this paper proposes an enhanced particle swarm optimization-differential evolution feature selection (PSO-DEFS based feature selection approach with biometric authentication for the identification of DR. Initially, a hybrid median filter (HMF is used for pre-processing the input images. Then, the pre-processed images are embedded with each other by using least significant bit (LSB for authentication purpose. Simultaneously, the image features are extracted using convoluted local tetra pattern (CLTrP and Tamura features. Feature selection is performed using PSO-DEFS and PSO-gravitational search algorithm (PSO-GSA to reduce time complexity. Based on some performance metrics, the PSO-DEFS is chosen as a better choice for feature selection. The feature selection is performed based on the fitness value. A multi-relevance vector machine (M-RVM is introduced to classify the 13 normal and 62 abnormal images among 75 images from 60 patients. Finally, the DR patients are further classified by M-RVM. The experimental results exhibit that the proposed approach achieves better accuracy, sensitivity, and specificity than the existing techniques.
Jiang, Peng; Xu, Yiming; Wu, Feng
2016-01-14
Existing move-restricted node self-deployment algorithms are based on a fixed node communication radius, evaluate the performance based on network coverage or the connectivity rate and do not consider the number of nodes near the sink node and the energy consumption distribution of the network topology, thereby degrading network reliability and the energy consumption balance. Therefore, we propose a distributed underwater node self-deployment algorithm. First, each node begins the uneven clustering based on the distance on the water surface. Each cluster head node selects its next-hop node to synchronously construct a connected path to the sink node. Second, the cluster head node adjusts its depth while maintaining the layout formed by the uneven clustering and then adjusts the positions of in-cluster nodes. The algorithm originally considers the network reliability and energy consumption balance during node deployment and considers the coverage redundancy rate of all positions that a node may reach during the node position adjustment. Simulation results show, compared to the connected dominating set (CDS) based depth computation algorithm, that the proposed algorithm can increase the number of the nodes near the sink node and improve network reliability while guaranteeing the network connectivity rate. Moreover, it can balance energy consumption during network operation, further improve network coverage rate and reduce energy consumption.
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Peng Jiang
2016-01-01
Full Text Available Existing move-restricted node self-deployment algorithms are based on a fixed node communication radius, evaluate the performance based on network coverage or the connectivity rate and do not consider the number of nodes near the sink node and the energy consumption distribution of the network topology, thereby degrading network reliability and the energy consumption balance. Therefore, we propose a distributed underwater node self-deployment algorithm. First, each node begins the uneven clustering based on the distance on the water surface. Each cluster head node selects its next-hop node to synchronously construct a connected path to the sink node. Second, the cluster head node adjusts its depth while maintaining the layout formed by the uneven clustering and then adjusts the positions of in-cluster nodes. The algorithm originally considers the network reliability and energy consumption balance during node deployment and considers the coverage redundancy rate of all positions that a node may reach during the node position adjustment. Simulation results show, compared to the connected dominating set (CDS based depth computation algorithm, that the proposed algorithm can increase the number of the nodes near the sink node and improve network reliability while guaranteeing the network connectivity rate. Moreover, it can balance energy consumption during network operation, further improve network coverage rate and reduce energy consumption.
A Comparison Between Fuzzy-PSO Controller and PID-PSO Controller for Controlling a DC Motor
Ghareaghaji, Ali
2015-01-01
The Direct current motors are in different types and there are several methods for controlling of their speed. In this paper two ways for speed controlling suggested. First a fuzzy logic speed controller for DC motor is designed and it's parameter calculated by Particle Sward Optimization (PSO). The speed controller designed according to fuzzy rules, then for having better performance, the controller optimized with PSO. Secondly a PID controller that it's parameter find by PSO, is used for sp...
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Iman Aghayan
2012-11-01
Full Text Available This paper compares two fuzzy clustering algorithms – fuzzy subtractive clustering and fuzzy C-means clustering – to a multi-layer perceptron neural network for their ability to predict the severity of crash injuries and to estimate the response time on the traffic crash data. Four clustering algorithms – hierarchical, K-means, subtractive clustering, and fuzzy C-means clustering – were used to obtain the optimum number of clusters based on the mean silhouette coefficient and R-value before applying the fuzzy clustering algorithms. The best-fit algorithms were selected according to two criteria: precision (root mean square, R-value, mean absolute errors, and sum of square error and response time (t. The highest R-value was obtained for the multi-layer perceptron (0.89, demonstrating that the multi-layer perceptron had a high precision in traffic crash prediction among the prediction models, and that it was stable even in the presence of outliers and overlapping data. Meanwhile, in comparison with other prediction models, fuzzy subtractive clustering provided the lowest value for response time (0.284 second, 9.28 times faster than the time of multi-layer perceptron, meaning that it could lead to developing an on-line system for processing data from detectors and/or a real-time traffic database. The model can be extended through improvements based on additional data through induction procedure.
Oña, Ofelia B.; Ferraro, Marta B.; Facelli, Julio C.
2010-01-01
The characterization and prediction of the structures of metal silicon clusters is important for nanotechnology research because these clusters can be used as building blocks for nano devices, integrated circuits and solar cells. Several authors have postulated that there is a transition between exo to endo absorption of Cu in Sin clusters and showed that for n larger than 9 it is possible to find endohedral clusters. Unfortunately, no global searchers have confirmed this observation, which is based on local optimizations of plausible structures. Here we use parallel Genetic Algorithms (GA), as implemented in our MGAC software, directly coupled with DFT energy calculations to show that the global search of CuSin cluster structures does not find endohedral clusters for n < 8 but finds them for n ≥ 10. PMID:21785526
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Souza Lima, Carlos A. [Instituto de Engenharia Nuclear - Divisao de Reatores/PPGIEN, Rua Helio de Almeida 75, Cidade Universitaria - Ilha do Fundao, P.O. Box: 68550 - Zip Code: 21941-972, Rio de Janeiro (Brazil); Instituto Politecnico, Universidade do Estado do Rio de Janeiro, Pos-Graduacao em Modelagem Computacional, Rua Alberto Rangel - s/n, Vila Nova, Nova Friburgo, Zip Code: 28630-050, Nova Friburgo (Brazil); Lapa, Celso Marcelo F.; Pereira, Claudio Marcio do N.A. [Instituto de Engenharia Nuclear - Divisao de Reatores/PPGIEN, Rua Helio de Almeida 75, Cidade Universitaria - Ilha do Fundao, P.O. Box: 68550 - Zip Code: 21941-972, Rio de Janeiro (Brazil); Instituto Nacional de Ciencia e Tecnologia de Reatores Nucleares Inovadores (INCT) (Brazil); Cunha, Joao J. da [Eletronuclear Eletrobras Termonuclear - Gerencia de Analise de Seguranca Nuclear, Rua da Candelaria, 65, 7 andar. Centro, Zip Code: 20091-906, Rio de Janeiro (Brazil); Alvim, Antonio Carlos M. [Universidade Federal do Rio de Janeiro, COPPE/Nuclear, Cidade Universitaria - Ilha do Fundao s/n, P.O.Box 68509 - Zip Code: 21945-970, Rio de Janeiro (Brazil); Instituto Nacional de Ciencia e Tecnologia de Reatores Nucleares Inovadores (INCT) (Brazil)
2011-06-15
Research highlights: > Performance of PSO and GA techniques applied to similar system design. > This work uses ANGRA1 (two loop PWR) core as a prototype. > Results indicate that PSO technique is more adequate than GA to solve this kind of problem. - Abstract: This paper compares the performance of two optimization techniques, particle swarm optimization (PSO) and genetic algorithm (GA) applied to the design a typical reduced scale two loop Pressurized Water Reactor (PWR) core, at full power in single phase forced circulation flow. This comparison aims at analyzing the performance in reaching the global optimum, considering that both heuristics are based on population search methods, that is, methods whose population (candidate solution set) evolve from one generation to the next using a combination of deterministic and probabilistic rules. The simulated PWR, similar to ANGRA 1 power plant, was used as a case example to compare the performance of PSO and GA. Results from simulations indicated that PSO is more adequate to solve this kind of problem.
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Khurram Hammed
2016-01-01
Full Text Available This paper presents a stochastic global optimization technique known as Particle Swarm Optimization (PSO for joint estimation of amplitude and direction of arrival of the targets in RADAR communication system. The proposed scheme is an excellent optimization methodology and a promising approach for solving the DOA problems in communication systems. Moreover, PSO is quite suitable for real time scenario and easy to implement in hardware. In this study, uniform linear array is used and targets are supposed to be in far field of the arrays. Formulation of the fitness function is based on mean square error and this function requires a single snapshot to obtain the best possible solution. To check the accuracy of the algorithm, all of the results are taken by varying the number of antenna elements and targets. Finally, these results are compared with existing heuristic techniques to show the accuracy of PSO.
Ma, Xiaoke; Wang, Bingbo; Yu, Liang
2018-01-01
Community detection is fundamental for revealing the structure-functionality relationship in complex networks, which involves two issues-the quantitative function for community as well as algorithms to discover communities. Despite significant research on either of them, few attempt has been made to establish the connection between the two issues. To attack this problem, a generalized quantification function is proposed for community in weighted networks, which provides a framework that unifies several well-known measures. Then, we prove that the trace optimization of the proposed measure is equivalent with the objective functions of algorithms such as nonnegative matrix factorization, kernel K-means as well as spectral clustering. It serves as the theoretical foundation for designing algorithms for community detection. On the second issue, a semi-supervised spectral clustering algorithm is developed by exploring the equivalence relation via combining the nonnegative matrix factorization and spectral clustering. Different from the traditional semi-supervised algorithms, the partial supervision is integrated into the objective of the spectral algorithm. Finally, through extensive experiments on both artificial and real world networks, we demonstrate that the proposed method improves the accuracy of the traditional spectral algorithms in community detection.
Evolutional Ant Colony Method Using PSO
Morii, Nobuto; Aiyoshi, Eitarou
The ant colony method is one of heuristic methods capable of solving the traveling salesman problem (TSP), in which a good tour is generated by the artificial ant's probabilistic behavior. However, the generated tour length depends on the parameter describing the ant's behavior, and the best parameters corresponding to the problem to be solved is unknown. In this technical note, the evolutional strategy is presented to find the best parameter of the ant colony by using Particle Swarm Optimization (PSO) in the parameter space. Numerical simulations for benchmarks demonstrate effectiveness of the evolutional ant colony method.
Differential Evolution and Particle Swarm Optimization for Partitional Clustering
DEFF Research Database (Denmark)
Krink, Thiemo; Paterlini, Sandra
2006-01-01
for numerical optimisation, which are hardly known outside the search heuristics field, are particle swarm optimisation (PSO) and differential evolution (DE). The performance of GAs for a representative point evolution approach to clustering is compared with PSO and DE. The empirical results show that DE...... is clearly and consistently superior compared to GAs and PSO for hard clustering problems, both with respect to precision as well as robustness (reproducibility) of the results. Only for simple data sets, the GA and PSO can obtain the same quality of results. Apart from superior performance, DE is easy...
Numerical linked-cluster algorithms. II. t-J models on the square lattice.
Rigol, Marcos; Bryant, Tyler; Singh, Rajiv R P
2007-06-01
We discuss the application of a recently introduced numerical linked-cluster (NLC) algorithm to strongly correlated itinerant models. In particular, we present a study of thermodynamic observables: chemical potential, entropy, specific heat, and uniform susceptibility for the t-J model on the square lattice, with Jt=0.5 and 0.3. Our NLC results are compared with those obtained from high-temperature expansions (HTE) and the finite-temperature Lanczos method (FTLM). We show that there is a sizeable window in temperature where NLC results converge without extrapolations whereas HTE diverges. Upon extrapolations, the overall agreement between NLC, HTE, and FTLM is excellent in some cases down to 0.25t . At intermediate temperatures NLC results are better controlled than other methods, making it easier to judge the convergence and numerical accuracy of the method.
Wu, Jia-Rui; Guo, Wei-Xian; Zhang, Xiao-Meng; Yang, Bing; Zhang, Bing
2014-02-01
Based on the data mining methods of association rules and clustering algorithm, the 188 prescriptions for cough that built by Yan Zhenghua were collected and analyzed to get the frequency of drug usage and the relationship between drugs. From which we could conclude the experiences of Yan Zhenghua for the treatment of cough. The results of the analysis were that 20 core combinations were dig out, such as Bambusae Caulis in Taenias-Almond-Sactmarsh Aster. And there were 10 new prescriptions were found out, such as Sactmarsh Aster-Scutellariae Radix-Album Viscum-Bambusae Caulis in Taenian-Eriobotryae Folium. The results of the analysis were proved that Yan Zhenghua was good at curing cough by using the traditional Chinese medicine that can dispel wind and heat from the body, and remove heat from the lung to relieve cough.
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Wei Xiaozhao
2016-03-01
Full Text Available For the development of the construction industry, the construction of data era is approaching, BIM (building information model with the actual needs of the construction industry has been widely used as a building information clan system software, different software for the practical application of different maturity, through the expert scoring method for the application of BIM technology maturity index mark, establish the evaluation index system, using PCA - Q clustering algorithm for the evaluation index system of classification, comprehensive evaluation in combination with the Choquet integral on the classification of evaluation index system, to achieve a reasonable assessment of the application of BIM technology maturity index. To lay a foundation for the future development of BIM Technology in various fields of construction, at the same time provides direction for the comprehensive application of BIM technology.
Load Weight Classification of The Quayside Container Crane Based On K-Means Clustering Algorithm
Zhang, Bingqian; Hu, Xiong; Tang, Gang; Wang, Yide
2017-07-01
The precise knowledge of the load weight of each operation of the quayside container crane is important for accurately assessing the service life of the crane. The load weight is directly related to the vibration intensity. Through the study on the vibration of the hoist motor of the crane in radial and axial directions, we can classify the load using K-means clustering algorithm and quantitative statistical analysis. Vibration in radial direction is significantly and positively correlated with that in axial direction by correlation analysis, which means that we can use the data only in one of the directions to carry out the study improving then the efficiency without degrading the accuracy of load classification. The proposed method can well represent the real-time working condition of the crane.
Evaluation of clustering algorithms at the electromagnetic calorimeter of the PADME experiment
Leonardi, E.; Piperno, G.; Raggi, M.
2017-10-01
A possible solution to the Dark Matter problem postulates that it interacts with Standard Model particles through a new force mediated by a “portal”. If the new force has a U(1) gauge structure, the “portal” is a massive photon-like vector particle, called dark photon or A’. The PADME experiment at the DAΦNE Beam-Test Facility (BTF) in Frascati is designed to detect dark photons produced in positron on fixed target annihilations decaying to dark matter (e+e-→γA‧) by measuring the final state missing mass. One of the key roles of the experiment will be played by the electromagnetic calorimeter, which will be used to measure the properties of the final state recoil γ. The calorimeter will be composed by 616 21×21×230 mm3 BGO crystals oriented with the long axis parallel to the beam direction and disposed in a roughly circular shape with a central hole to avoid the pile up due to the large number of low angle Bremsstrahlung photons. The total energy and position of the electromagnetic shower generated by a photon impacting on the calorimeter can be reconstructed by collecting the energy deposits in the cluster of crystals interested by the shower. In PADME we are testing two different clustering algorithms, PADME-Radius and PADME-Island, based on two complementary strategies. In this paper we will describe the two algorithms, with the respective implementations, and report on the results obtained with them at the PADME energy scale (< 1 GeV), both with a GEANT4 based simulation and with an existing 5×5 matrix of BGO crystals tested at the DAΦNE BTF.
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Huang Su-Yun
2011-05-01
Full Text Available Abstract Background With the completion of the international HapMap project, many studies have been conducted to investigate the association between complex diseases and haplotype variants. Such haplotype-based association studies, however, often face two difficulties; one is the large number of haplotype configurations in the chromosome region under study, and the other is the ambiguity in haplotype phase when only genotype data are observed. The latter complexity may be handled based on an EM algorithm with family data incorporated, whereas the former can be more problematic, especially when haplotypes of rare frequencies are involved. Here based on family data we propose to cluster long haplotypes of linked SNPs in a biological sense, so that the number of haplotypes can be reduced and the power of statistical tests of association can be increased. Results In this paper we employ family genotype data and combine a clustering scheme with a likelihood ratio statistic to test the association between quantitative phenotypes and haplotype variants. Haplotypes are first grouped based on their evolutionary closeness to establish a set containing core haplotypes. Then, we construct for each family the transmission and non-transmission phase in terms of these core haplotypes, taking into account simultaneously the phase ambiguity as weights. The likelihood ratio test (LRT is next conducted with these weighted and clustered haplotypes to test for association with disease. This combination of evolution-guided haplotype clustering and weighted assignment in LRT is able, via its core-coding system, to incorporate into analysis both haplotype phase ambiguity and transmission uncertainty. Simulation studies show that this proposed procedure is more informative and powerful than three family-based association tests, FAMHAP, FBAT, and an LRT with a group consisting exclusively of rare haplotypes. Conclusions The proposed procedure takes into account the
Lee, Mei-Hsien; Tzeng, Jung-Ying; Huang, Su-Yun; Hsiao, Chuhsing Kate
2011-05-19
With the completion of the international HapMap project, many studies have been conducted to investigate the association between complex diseases and haplotype variants. Such haplotype-based association studies, however, often face two difficulties; one is the large number of haplotype configurations in the chromosome region under study, and the other is the ambiguity in haplotype phase when only genotype data are observed. The latter complexity may be handled based on an EM algorithm with family data incorporated, whereas the former can be more problematic, especially when haplotypes of rare frequencies are involved. Here based on family data we propose to cluster long haplotypes of linked SNPs in a biological sense, so that the number of haplotypes can be reduced and the power of statistical tests of association can be increased. In this paper we employ family genotype data and combine a clustering scheme with a likelihood ratio statistic to test the association between quantitative phenotypes and haplotype variants. Haplotypes are first grouped based on their evolutionary closeness to establish a set containing core haplotypes. Then, we construct for each family the transmission and non-transmission phase in terms of these core haplotypes, taking into account simultaneously the phase ambiguity as weights. The likelihood ratio test (LRT) is next conducted with these weighted and clustered haplotypes to test for association with disease. This combination of evolution-guided haplotype clustering and weighted assignment in LRT is able, via its core-coding system, to incorporate into analysis both haplotype phase ambiguity and transmission uncertainty. Simulation studies show that this proposed procedure is more informative and powerful than three family-based association tests, FAMHAP, FBAT, and an LRT with a group consisting exclusively of rare haplotypes. The proposed procedure takes into account the uncertainty in phase determination and in transmission, utilizes
A robust PSSs design using PSO in a multi-machine environment
Energy Technology Data Exchange (ETDEWEB)
Shayeghi, H., E-mail: hshayeghi@gmail.co [Technical Engineering Department, University of Mohaghegh Ardabili, Ardabil (Iran, Islamic Republic of); Shayanfar, H.A. [Center of Excellence for Power Automation and Operation, Electrical Engineering Department, Iran University of Science and Technology, Tehran (Iran, Islamic Republic of); Safari, A.; Aghmasheh, R. [Technical Engineering Department, Zanjan University, Zanjan (Iran, Islamic Republic of)
2010-04-15
In this paper, multi-objective design of multi-machine power system stabilizers (PSSs) using particle swarm optimization (PSO) is proposed. The potential of the proposed approach for optimal setting of the widely used conventional lead-lag PSSs has been investigated. The stabilizers are tuned to simultaneously shift the lightly damped and undamped electromechanical modes of all machines to a prescribed zone in the s-plane. The PSSs parameters tuning problem is converted to an optimization problem with the eigenvalue-based multi-objective function comprising the damping factor, and the damping ratio of the lightly damped electromechanical modes, which is solved by a PSO algorithm which has a strong ability to find the most optimistic results. The robustness of the proposed PSO-based PSSs (PSOPSS) is verified on a multi-machine power system under different operating conditions and disturbances. The results of the proposed PSOPSS are compared with the genetic algorithm based tuned PSS and classical PSSs through eigenvalue analysis, nonlinear time-domain simulation and some performance indices to illustrate its robust performance for a wide range of loading conditions.
EEG signal classification using PSO trained RBF neural network for epilepsy identification
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Sandeep Kumar Satapathy
Full Text Available The electroencephalogram (EEG is a low amplitude signal generated in the brain, as a result of information flow during the communication of several neurons. Hence, careful analysis of these signals could be useful in understanding many human brain disorder diseases. One such disease topic is epileptic seizure identification, which can be identified via a classification process of the EEG signal after preprocessing with the discrete wavelet transform (DWT. To classify the EEG signal, we used a radial basis function neural network (RBFNN. As shown herein, the network can be trained to optimize the mean square error (MSE by using a modified particle swarm optimization (PSO algorithm. The key idea behind the modification of PSO is to introduce a method to overcome the problem of slow searching in and around the global optimum solution. The effectiveness of this procedure was verified by an experimental analysis on a benchmark dataset which is publicly available. The result of our experimental analysis revealed that the improvement in the algorithm is significant with respect to RBF trained by gradient descent and canonical PSO. Here, two classes of EEG signals were considered: the first being an epileptic and the other being non-epileptic. The proposed method produced a maximum accuracy of 99% as compared to the other techniques. Keywords: Electroencephalography, Radial basis function neural network, Particle swarm optimization, Discrete wavelet transform, Machine learning
a Novel 3d Intelligent Fuzzy Algorithm Based on Minkowski-Clustering
Toori, S.; Esmaeily, A.
2017-09-01
Assessing and monitoring the state of the earth surface is a key requirement for global change research. In this paper, we propose a new consensus fuzzy clustering algorithm that is based on the Minkowski distance. This research concentrates on Tehran's vegetation mass and its changes during 29 years using remote sensing technology. The main purpose of this research is to evaluate the changes in vegetation mass using a new process by combination of intelligent NDVI fuzzy clustering and Minkowski distance operation. The dataset includes the images of Landsat8 and Landsat TM, from 1989 to 2016. For each year three images of three continuous days were used to identify vegetation impact and recovery. The result was a 3D NDVI image, with one dimension for each day NDVI. The next step was the classification procedure which is a complicated process of categorizing pixels into a finite number of separate classes, based on their data values. If a pixel satisfies a certain set of standards, the pixel is allocated to the class that corresponds to those criteria. This method is less sensitive to noise and can integrate solutions from multiple samples of data or attributes for processing data in the processing industry. The result was a fuzzy one dimensional image. This image was also computed for the next 28 years. The classification was done in both specified urban and natural park areas of Tehran. Experiments showed that our method worked better in classifying image pixels in comparison with the standard classification methods.
Adham, Manal T; Bentley, Peter J
2016-08-01
This paper proposes and evaluates a solution to the truck redistribution problem prominent in London's Santander Cycle scheme. Due to the complexity of this NP-hard combinatorial optimisation problem, no efficient optimisation techniques are known to solve the problem exactly. This motivates our use of the heuristic Artificial Ecosystem Algorithm (AEA) to find good solutions in a reasonable amount of time. The AEA is designed to take advantage of highly distributed computer architectures and adapt to changing problems. In the AEA a problem is first decomposed into its relative sub-components; they then evolve solution building blocks that fit together to form a single optimal solution. Three variants of the AEA centred on evaluating clustering methods are presented: the baseline AEA, the community-based AEA which groups stations according to journey flows, and the Adaptive AEA which actively modifies clusters to cater for changes in demand. We applied these AEA variants to the redistribution problem prominent in bike share schemes (BSS). The AEA variants are empirically evaluated using historical data from Santander Cycles to validate the proposed approach and prove its potential effectiveness. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
A PSO-SVM-based 24 Hours Power Load Forecasting Model
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Yu Xiaoxu
2015-01-01
Full Text Available In order to improve the drawbacks of over-fitting and easily get stuck into local extremes of BACK propagation Neural Network, a new method of combination of wavelet transform and PSO-SVM (Particle Swarm Optimization- Support Vector Machine power load forecasting model is proposed. By employing wave-let transform, the authors decompose the time sequences of power load into high-frequency and low-frequency parts, namely the low-frequency part forecast with this model and the high-frequency part forecast with weighted average method. With PSO, which is a heuristic bionic optimization algorithm, the authors figure out the prefer-able parameters of SVM, and the model proposed in this paper is tested to be more accurately to forecast the 24h power load than BP model.
Optimizing Multiple QoS for Workflow Applications using PSO and Min-Max Strategy
Umar Ambursa, Faruku; Latip, Rohaya; Abdullah, Azizol; Subramaniam, Shamala
2017-08-01
Workflow scheduling under multiple QoS constraints is a complicated optimization problem. Metaheuristic techniques are excellent approaches used in dealing with such problem. Many metaheuristic based algorithms have been proposed, that considers various economic and trustworthy QoS dimensions. However, most of these approaches lead to high violation of user-defined QoS requirements in tight situation. Recently, a new Particle Swarm Optimization (PSO)-based QoS-aware workflow scheduling strategy (LAPSO) is proposed to improve performance in such situations. LAPSO algorithm is designed based on synergy between a violation handling method and a hybrid of PSO and min-max heuristic. Simulation results showed a great potential of LAPSO algorithm to handling user requirements even in tight situations. In this paper, the performance of the algorithm is anlysed further. Specifically, the impact of the min-max strategy on the performance of the algorithm is revealed. This is achieved by removing the violation handling from the operation of the algorithm. The results show that LAPSO based on only the min-max method still outperforms the benchmark, even though the LAPSO with the violation handling performs more significantly better.
PSO based PI controller design for a solar charger system.
Yau, Her-Terng; Lin, Chih-Jer; Liang, Qin-Cheng
2013-01-01
Due to global energy crisis and severe environmental pollution, the photovoltaic (PV) system has become one of the most important renewable energy sources. Many previous studies on solar charger integrated system only focus on load charge control or switching Maximum Power Point Tracking (MPPT) and charge control modes. This study used two-stage system, which allows the overall portable solar energy charging system to implement MPPT and optimal charge control of Li-ion battery simultaneously. First, this study designs a DC/DC boost converter of solar power generation, which uses variable step size incremental conductance method (VSINC) to enable the solar cell to track the maximum power point at any time. The voltage was exported from the DC/DC boost converter to the DC/DC buck converter, so that the voltage dropped to proper voltage for charging the battery. The charging system uses constant current/constant voltage (CC/CV) method to charge the lithium battery. In order to obtain the optimum PI charge controller parameters, this study used intelligent algorithm to determine the optimum parameters. According to the simulation and experimental results, the control parameters resulted from PSO have better performance than genetic algorithms (GAs).
PSO Based PI Controller Design for a Solar Charger System
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Her-Terng Yau
2013-01-01
Full Text Available Due to global energy crisis and severe environmental pollution, the photovoltaic (PV system has become one of the most important renewable energy sources. Many previous studies on solar charger integrated system only focus on load charge control or switching Maximum Power Point Tracking (MPPT and charge control modes. This study used two-stage system, which allows the overall portable solar energy charging system to implement MPPT and optimal charge control of Li-ion battery simultaneously. First, this study designs a DC/DC boost converter of solar power generation, which uses variable step size incremental conductance method (VSINC to enable the solar cell to track the maximum power point at any time. The voltage was exported from the DC/DC boost converter to the DC/DC buck converter, so that the voltage dropped to proper voltage for charging the battery. The charging system uses constant current/constant voltage (CC/CV method to charge the lithium battery. In order to obtain the optimum PI charge controller parameters, this study used intelligent algorithm to determine the optimum parameters. According to the simulation and experimental results, the control parameters resulted from PSO have better performance than genetic algorithms (GAs.
Wu, Tin-Yu; Chang, Tse; Chu, Teng-Hao
2017-02-01
Many data mining adopts the form of Artificial Neural Network (ANN) to solve many problems, many problems will be involved in the process of training Artificial Neural Network, such as the number of samples with volume label, the time and performance of training, the number of hidden layers and Transfer function, if the compared data results are not expected, it cannot be known clearly that which dimension causes the deviation, the main reason is that Artificial Neural Network trains compared results through the form of modifying weight, and it is not a kind of training to improve the original algorithm for the extraction algorithm of image, but tend to obtain correct value aimed at the result plus the weigh; in terms of these problems, this paper will mainly put forward a method to assist in the image data analysis of Artificial Neural Network; normally, a parameter will be set as the value to extract feature vector during processing the image, which will be considered by us as weight, the experiment will use the value extracted from feature point of Speeded Up Robust Features (SURF) Image as the basis for training, SURF itself can extract different feature points according to extracted values, we will make initial semi-supervised clustering according to these values, and use Modified K - on his Neighbors (MFKNN) as training and classification, the matching mode of unknown images is not one-to-one complete comparison, but only compare group Centroid, its main purpose is to save its efficiency and speed up, and its retrieved data results will be observed and analyzed eventually; the method is mainly to make clustering and classification with the use of the nature of image feature point to give values to groups with high error rate to produce new feature points and put them into Input Layer of Artificial Neural Network for training, and finally comparative analysis is made with Back-Propagation Neural Network (BPN) of Genetic Algorithm-Artificial Neural Network
A Comparison of Selected Modifications of the Particle Swarm Optimization Algorithm
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Michala Jakubcová
2014-01-01
Full Text Available We compare 27 modifications of the original particle swarm optimization (PSO algorithm. The analysis evaluated nine basic PSO types, which differ according to the swarm evolution as controlled by various inertia weights and constriction factor. Each of the basic PSO modifications was analyzed using three different distributed strategies. In the first strategy, the entire swarm population is considered as one unit (OC-PSO, the second strategy periodically partitions the population into equally large complexes according to the particle’s functional value (SCE-PSO, and the final strategy periodically splits the swarm population into complexes using random permutation (SCERand-PSO. All variants are tested using 11 benchmark functions that were prepared for the special session on real-parameter optimization of CEC 2005. It was found that the best modification of the PSO algorithm is a variant with adaptive inertia weight. The best distribution strategy is SCE-PSO, which gives better results than do OC-PSO and SCERand-PSO for seven functions. The sphere function showed no significant difference between SCE-PSO and SCERand-PSO. It follows that a shuffling mechanism improves the optimization process.
An Efficient Algorithm for Unconstrained Optimization
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Sergio Gerardo de-los-Cobos-Silva
2015-01-01
Full Text Available This paper presents an original and efficient PSO algorithm, which is divided into three phases: (1 stabilization, (2 breadth-first search, and (3 depth-first search. The proposed algorithm, called PSO-3P, was tested with 47 benchmark continuous unconstrained optimization problems, on a total of 82 instances. The numerical results show that the proposed algorithm is able to reach the global optimum. This work mainly focuses on unconstrained optimization problems from 2 to 1,000 variables.
BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data
DEFF Research Database (Denmark)
Sun, Peng; Guo, Jiong; Baumbach, Jan
2013-01-01
to solve the weighted bi-cluster editing problem. It implements (1) an exact algorithm based on fixed-parameter tractability and (2) a polynomial-time greedy heuristics based on solving the hardest part, edge deletions, first. We evaluated its performance on artificial graphs. Afterwards we exemplarily...
Zhang, Yan-jun; Zhang, Shu-guo; Fu, Guang-wei; Li, Da; Liu, Yin; Bi, Wei-hong
2012-04-01
This paper presents a novel algorithm which blends optimize particle swarm optimization (PSO) algorithm and Levenberg-Marquardt (LM) algorithm according to the probability. This novel algorithm can be used for Pseudo-Voigt type of Brillouin scattering spectrum to improve the degree of fitting and precision of shift extraction. This algorithm uses PSO algorithm as the main frame. First, PSO algorithm is used in global search, after a certain number of optimization every time there generates a random probability rand (0, 1). If rand (0, 1) is less than or equal to the predetermined probability P, the optimal solution obtained by PSO algorithm will be used as the initial value of LM algorithm. Then LM algorithm is used in local depth search and the solution of LM algorithm is used to replace the previous PSO algorithm for optimal solutions. Again the PSO algorithm is used for global search. If rand (0, 1) was greater than P, PSO algorithm is still used in search, waiting the next optimization to generate random probability rand (0, 1) to judge. Two kinds of algorithms are alternatively used to obtain ideal global optimal solution. Simulation analysis and experimental results show that the new algorithm overcomes the shortcomings of single algorithm and improves the degree of fitting and precision of frequency shift extraction in Brillouin scattering spectrum, and fully prove that the new method is practical and feasible.
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Ajay Khunteta
2016-01-01
Full Text Available Active contour models, colloquially known as snakes, are quite popular for several applications such as object boundary detection, image segmentation, object tracking, and classification via energy minimization. While energy minimization may be accomplished using traditional optimization methods, approaches based on nature-inspired evolutionary algorithms have been developed in recent years. One such evolutionary algorithm that has been used extensively in active contours is the particle swarm optimization (PSO. However, conventional PSO converges slowly and gets trapped in local minimum easily which results in inaccurate detection of concavities in the object boundary. This is taken care of by using proposed multiswarm PSO in which a swarm is set for every control point in the snake and then all the swarms search for their best points simultaneously through information sharing among them. The performance of the multiswarm PSO-based search process is further enhanced by using dynamic adaptation of the inertia factor. In this paper, we propose using a set of fuzzy rules to adjust the inertia weight on the basis of the current normalized snake energy and the current value of inertia. Experimental results demonstrate the effectiveness of the proposed method compared to conventional approaches.
Energy Technology Data Exchange (ETDEWEB)
Yin, Jiandong; Yang, Jiawen; Guo, Qiyong [Shengjing Hospital of China Medical University, Department of Radiology, Shenyang (China)
2015-05-01
Arterial input function (AIF) plays an important role in the quantification of cerebral hemodynamics. The purpose of this study was to select the best reproducible clustering method for AIF detection by comparing three algorithms reported previously in terms of detection accuracy and computational complexity. First, three reproducible clustering methods, normalized cut (Ncut), hierarchy (HIER), and fast affine propagation (FastAP), were applied independently to simulated data which contained the true AIF. Next, a clinical verification was performed where 42 subjects participated in dynamic susceptibility contrast MRI (DSC-MRI) scanning. The manual AIF and AIFs based on the different algorithms were obtained. The performance of each algorithm was evaluated based on shape parameters of the estimated AIFs and the true or manual AIF. Moreover, the execution time of each algorithm was recorded to determine the algorithm that operated more rapidly in clinical practice. In terms of the detection accuracy, Ncut and HIER method produced similar AIF detection results, which were closer to the expected AIF and more accurate than those obtained using FastAP method; in terms of the computational efficiency, the Ncut method required the shortest execution time. Ncut clustering appears promising because it facilitates the automatic and robust determination of AIF with high accuracy and efficiency. (orig.)
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Yan Hong Chen
2016-01-01
Full Text Available This paper proposes a new electric load forecasting model by hybridizing the fuzzy time series (FTS and global harmony search algorithm (GHSA with least squares support vector machines (LSSVM, namely GHSA-FTS-LSSVM model. Firstly, the fuzzy c-means clustering (FCS algorithm is used to calculate the clustering center of each cluster. Secondly, the LSSVM is applied to model the resultant series, which is optimized by GHSA. Finally, a real-world example is adopted to test the performance of the proposed model. In this investigation, the proposed model is verified using experimental datasets from the Guangdong Province Industrial Development Database, and results are compared against autoregressive integrated moving average (ARIMA model and other algorithms hybridized with LSSVM including genetic algorithm (GA, particle swarm optimization (PSO, harmony search, and so on. The forecasting results indicate that the proposed GHSA-FTS-LSSVM model effectively generates more accurate predictive results.
DEFF Research Database (Denmark)
Ackerman, Margareta; Ben-David, Shai; Branzei, Simina
2012-01-01
We investigate a natural generalization of the classical clustering problem, considering clustering tasks in which different instances may have different weights.We conduct the first extensive theoretical analysis on the influence of weighted data on standard clustering algorithms in both...... the partitional and hierarchical settings, characterizing the conditions under which algorithms react to weights. Extending a recent framework for clustering algorithm selection, we propose intuitive properties that would allow users to choose between clustering algorithms in the weighted setting and classify...
An Associate Rules Mining Algorithm Based on Artificial Immune Network for SAR Image Segmentation
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Mengling Zhao
2015-01-01
Full Text Available As a computational intelligence method, artificial immune network (AIN algorithm has been widely applied to pattern recognition and data classification. In the existing artificial immune network algorithms, the calculating affinity for classifying is based on calculating a certain distance, which may lead to some unsatisfactory results in dealing with data with nominal attributes. To overcome the shortcoming, the association rules are introduced into AIN algorithm, and we propose a new classification algorithm an associate rules mining algorithm based on artificial immune network (ARM-AIN. The new method uses the association rules to represent immune cells and mine the best association rules rather than searching optimal clustering centers. The proposed algorithm has been extensively compared with artificial immune network classification (AINC algorithm, artificial immune network classification algorithm based on self-adaptive PSO (SPSO-AINC, and PSO-AINC over several large-scale data sets, target recognition of remote sensing image, and segmentation of three different SAR images. The result of experiment indicates the superiority of ARM-AIN in classification accuracy and running time.
Energy Technology Data Exchange (ETDEWEB)
Fleisch, Markus C.; Maxell, Christopher A.; Kuper, Claudia K.; Brown, Erika T.; Parvin, Bahram; Barcellos-Hoff, Mary-Helen; Costes,Sylvain V.
2006-03-08
Centrosomes are small organelles that organize the mitoticspindle during cell division and are also involved in cell shape andpolarity. Within epithelial tumors, such as breast cancer, and somehematological tumors, centrosome abnormalities (CA) are common, occurearly in disease etiology, and correlate with chromosomal instability anddisease stage. In situ quantification of CA by optical microscopy ishampered by overlap and clustering of these organelles, which appear asfocal structures. CA has been frequently associated with Tp53 status inpremalignant lesions and tumors. Here we describe an approach toaccurately quantify centrosomes in tissue sections and tumors.Considering proliferation and baseline amplification rate the resultingpopulation based ratio of centrosomes per nucleus allow the approximationof the proportion of cells with CA. Using this technique we show that20-30 percent of cells have amplified centrosomes in Tp53 null mammarytumors. Combining fluorescence detection, deconvolution microscopy and amathematical algorithm applied to a maximum intensity projection we showthat this approach is superior to traditional investigator based visualanalysis or threshold-based techniques.
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Yifei Tong
2016-02-01
Full Text Available Energy efficiency is a buzzword of the 21st century. With the ever growing need for energy efficient and low-carbon production, it is a big challenge for high energy-consumption enterprises to reduce their energy consumption. To this aim, a forging enterprise, DVR (the abbreviation of a forging enterprise, is researched. Firstly, an investigation into the production processes of DVR is given as well as an analysis of forging production. Then, the energy-saving forging scheduling is decomposed into two sub-problems. One is for cutting and machining scheduling, which is similar to traditional machining scheduling. The other one is for forging and heat treatment scheduling. Thirdly, former forging production scheduling is presented and solved based on an improved genetic algorithm. Fourthly, the latter is discussed in detail, followed by proposed dynamic clustering and stacking combination optimization. The proposed stacking optimization requires making the gross weight of forgings as close to the maximum batch capacity as possible. The above research can help reduce the heating times, and increase furnace utilization with high energy efficiency and low carbon emissions.
Multi-GPU-based Swendsen-Wang multi-cluster algorithm with reduced data traffic
Komura, Yukihiro
2015-10-01
The computational performance of multi-GPU applications can be degraded by the data communication between each GPU. To realize high-speed computation with multiple GPUs, we should minimize the cost of this data communication. In this paper, I propose a multiple GPU computing method for the Swendsen-Wang (SW) multi-cluster algorithm that reduces the data traffic between each GPU. I realize this reduction in data traffic by adjusting the connection information between each GPU in advance. The code is implemented on the large-scale open science TSUBAME 2.5 supercomputer, and its performance is evaluated using a simulation of the three-dimensional Ising model at the critical temperature. The results show that the data communication between each GPU is reduced by 90%, and the number of communications between each GPU decreases by about half. Using 512 GPUs, the computation time is 0.005 ns per spin update at the critical temperature for a total system size of N =40963.
A modular spectrum sensing system based on PSO-SVM.
Cai, Zhuoran; Zhao, Honglin; Yang, Zhutian; Mo, Yun
2012-11-08
In the cognitive radio system, spectrum sensing for detecting the presence of primary users in a licensed spectrum is a fundamental problem. Energy detection is the most popular spectrum sensing scheme used to differentiate the case where the primary user’s signal is present from the case where there is only noise. In fact, the nature of spectrum sensing can be taken as a binary classification problem, and energy detection is a linear classifier. If the signal-to-noise ratio (SNR) of the received signal is low, and the number of received signal samples for sensing is small, the binary classification problem is linearly inseparable. In this situation the performance of energy detection will decrease seriously. In this paper, a novel approach for obtaining a nonlinear threshold based on support vector machine with particle swarm optimization (PSO-SVM) to replace the linear threshold used in traditional energy detection is proposed. Simulations demonstrate that the performance of the proposed algorithm is much better than that of traditional energy detection.
Yuan, Y.
2014-04-28
Energy is a major factor in designing wireless sensor networks (WSNs). In particular, in the real world, battery energy is limited; thus the effective improvement of the energy becomes the key of the routing protocols. Besides, the sensor nodes are always deployed far away from the base station and the transmission energy consumption is index times increasing with the increase of distance as well. This paper proposes a new routing method for WSNs to extend the network lifetime using a combination of a clustering algorithm, a fuzzy approach, and an A-star method. The proposal is divided into two steps. Firstly, WSNs are separated into clusters using the Stable Election Protocol (SEP) method. Secondly, the combined methods of fuzzy inference and A-star algorithm are adopted, taking into account the factors such as the remaining power, the minimum hops, and the traffic numbers of nodes. Simulation results demonstrate that the proposed method has significant effectiveness in terms of balancing energy consumption as well as maximizing the network lifetime by comparing the performance of the A-star and fuzzy (AF) approach, cluster and fuzzy (CF)method, cluster and A-star (CA)method, A-star method, and SEP algorithm under the same routing criteria. 2014 Yali Yuan et al.
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Shanen Yu
2016-12-01
Full Text Available Most existing deployment algorithms for event coverage in underwater wireless sensor networks (UWSNs usually do not consider that network communication has non-uniform characteristics on three-dimensional underwater environments. Such deployment algorithms ignore that the nodes are distributed at different depths and have different probabilities for data acquisition, thereby leading to imbalances in the overall network energy consumption, decreasing the network performance, and resulting in poor and unreliable late network operation. Therefore, in this study, we proposed an uneven cluster deployment algorithm based network layered for event coverage. First, according to the energy consumption requirement of the communication load at different depths of the underwater network, we obtained the expected value of deployment nodes and the distribution density of each layer network after theoretical analysis and deduction. Afterward, the network is divided into multilayers based on uneven clusters, and the heterogeneous communication radius of nodes can improve the network connectivity rate. The recovery strategy is used to balance the energy consumption of nodes in the cluster and can efficiently reconstruct the network topology, which ensures that the network has a high network coverage and connectivity rate in a long period of data acquisition. Simulation results show that the proposed algorithm improves network reliability and prolongs network lifetime by significantly reducing the blind movement of overall network nodes while maintaining a high network coverage and connectivity rate.
Application of k-means clustering algorithm in grouping the DNA sequences of hepatitis B virus (HBV)
Bustamam, A.; Tasman, H.; Yuniarti, N.; Frisca, Mursidah, I.
2017-07-01
Based on WHO data, an estimated of 15 millions people worldwide who are infected with hepatitis B (HBsAg+), which is caused by HBV virus, are also infected by hepatitis D, which is caused by HDV virus. Hepatitis D infection can occur simultaneously with hepatitis B (co infection) or after a person is exposed to chronic hepatitis B (super infection). Since HDV cannot live without HBV, HDV infection is closely related to HBV infection, hence it is very realistic that every effort of prevention against hepatitis B can indirectly prevent hepatitis D. This paper presents clustering of HBV DNA sequences by using k-means clustering algorithm and R programming. Clustering processes are started with collecting HBV DNA sequences from GenBank, then performing extraction HBV DNA sequences using n-mers frequency and furthermore the extraction results are collected as a matrix and normalized using the min-max normalization with interval [0, 1] which will later be used as an input data. The number of clusters is two and the initial centroid selected of the cluster is chosen randomly. In each iteration, the distance of every object to each centroid are calculated using the Euclidean distance and the minimum distance is selected to determine the membership in a cluster until two convergent clusters are created. As the result, the HBV viruses in the first cluster is more virulent than the HBV viruses in the second cluster, so the HBV viruses in the first cluster can potentially evolve with HDV viruses that cause hepatitis D.
Directory of Open Access Journals (Sweden)
Rocco Langone
2016-05-01
Full Text Available Spectral clustering methods allow datasets to be partitioned into clusters by mapping the input datapoints into the space spanned by the eigenvectors of the Laplacian matrix. In this article, we make use of the incomplete Cholesky decomposition (ICD to construct an approximation of the graph Laplacian and reduce the size of the related eigenvalue problem from N to m, with m ≪ N . In particular, we introduce a new stopping criterion based on normalized mutual information between consecutive partitions, which terminates the ICD when the change in the cluster assignments is below a given threshold. Compared with existing ICD-based spectral clustering approaches, the proposed method allows the reduction of the number m of selected pivots (i.e., to obtain a sparser model and at the same time, to maintain high clustering quality. The method scales linearly with respect to the number of input datapoints N and has low memory requirements, because only matrices of size N × m and m × m are calculated (in contrast to standard spectral clustering, where the construction of the full N × N similarity matrix is needed. Furthermore, we show that the number of clusters can be reliably selected based on the gap heuristics computed using just a small matrix R of size m × m instead of the entire graph Laplacian. The effectiveness of the proposed algorithm is tested on several datasets.
Alfarizy, A. D.; Indahwati; Sartono, B.
2017-03-01
Indonesia is the largest Hollywood movie industry target market in Southeast Asia in 2015. Hollywood movies distributed in Indonesia targeted people in all range of ages including children. Low awareness of guiding children while watching movies make them could watch any rated films even the unsuitable ones for their ages. Even after being translated into Bahasa and passed the censorship phase, words that uncomfortable for children to watch still exist. The purpose of this research is to cluster box office Hollywood movies based on Indonesian subtitle, revenue, IMDb user rating and genres as one of the reference for adults to choose right movies for their children to watch. Text mining is used to extract words from the subtitles and count the frequency for three group of words (bad words, sexual words and terror words), while Partition Around Medoids (PAM) Algorithm with Gower similarity coefficient as proximity matrix is used as clustering method. We clustered 624 movies from 2006 until first half of 2016 from IMDb. Cluster with highest silhouette coefficient value (0.36) is the one with 5 clusters. Animation, Adventure and Comedy movies with high revenue like in cluster 5 is recommended for children to watch, while Comedy movies with high revenue like in cluster 4 should be avoided to watch.
Indian Academy of Sciences (India)
positive numbers. The word 'algorithm' was most often associated with this algorithm till 1950. It may however be pOinted out that several non-trivial algorithms such as synthetic (polynomial) division have been found in Vedic Mathematics which are dated much before Euclid's algorithm. A programming language Is used.
Yañez, Osvaldo; Vásquez-Espinal, Alejandro; Inostroza, Diego; Ruiz, Lina; Pino-Rios, Ricardo; Tiznado, William
2017-07-15
Theoretical studies are essential for the structural characterization of clusters, when it comes to rationalize their unique size-dependent properties and composition. However, the rapid growth of local minima on the potential energy surface (PES), with respect to cluster size, makes the candidate identification a challenging undertaking. In this article, we introduce a hybrid strategy to explore the PES of clusters. This proposal involves the use of a biased initial population of a genetic algorithm procedure. Each individual in this population is built by assembling small fragments, according to the best matching of the Fukui function. The performance of a genetic algorithm procedure. The performance of the method is assessed on the PES exploration of medium-sized Sin clusters (n = 12-20). The most relevant results are: (a) the method converges at almost half of the time used by the canonical version of the GA and, (b) in all the studied cases, with the exception of Si13 and Si16 , the method allowed to identify the global minimum (GM) and other important low-lying structures. Additionally, the apparent deficiency of the proposal to identify the GM was corrected when a Si atom, or other low-lying isomers, were considered to build the clusters. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.
Rastogi, Richa; Londhe, Ashutosh; Srivastava, Abhishek; Sirasala, Kirannmayi M.; Khonde, Kiran
2017-03-01
In this article, a new scalable 3D Kirchhoff depth migration algorithm is presented on state of the art multicore CPU based cluster. Parallelization of 3D Kirchhoff depth migration is challenging due to its high demand of compute time, memory, storage and I/O along with the need of their effective management. The most resource intensive modules of the algorithm are traveltime calculations and migration summation which exhibit an inherent trade off between compute time and other resources. The parallelization strategy of the algorithm largely depends on the storage of calculated traveltimes and its feeding mechanism to the migration process. The presented work is an extension of our previous work, wherein a 3D Kirchhoff depth migration application for multicore CPU based parallel system had been developed. Recently, we have worked on improving parallel performance of this application by re-designing the parallelization approach. The new algorithm is capable to efficiently migrate both prestack and poststack 3D data. It exhibits flexibility for migrating large number of traces within the available node memory and with minimal requirement of storage, I/O and inter-node communication. The resultant application is tested using 3D Overthrust data on PARAM Yuva II, which is a Xeon E5-2670 based multicore CPU cluster with 16 cores/node and 64 GB shared memory. Parallel performance of the algorithm is studied using different numerical experiments and the scalability results show striking improvement over its previous version. An impressive 49.05X speedup with 76.64% efficiency is achieved for 3D prestack data and 32.00X speedup with 50.00% efficiency for 3D poststack data, using 64 nodes. The results also demonstrate the effectiveness and robustness of the improved algorithm with high scalability and efficiency on a multicore CPU cluster.
Applications of a new subspace clustering algorithm (COSA) in medical systems biology
Damian, D.; Orešič, M.; Verheij, E.; Meulman, J.; Friedman, J.; Adourian, A.; Morel, N.; Smilde, A.; Greef, J.
2007-01-01
A novel clustering approach named Clustering Objects on Subsets of Attributes (COSA) has been proposed (Friedman and Meulman, (2004). Clustering objects on subsets of attributes. J. R. Statist. Soc. B 66, 1-25.) for unsupervised analysis of complex data sets. We demonstrate its usefulness in medical
Andryani, Diyah Septi; Bustamam, Alhadi; Lestari, Dian
2017-03-01
Clustering aims to classify the different patterns into groups called clusters. In this clustering method, we use n-mers frequency to calculate the distance matrix which is considered more accurate than using the DNA alignment. The clustering results could be used to discover biologically important sub-sections and groups of genes. Many clustering methods have been developed, while hard clustering methods considered less accurate than fuzzy clustering methods, especially if it is used for outliers data. Among fuzzy clustering methods, fuzzy c-means is one the best known for its accuracy and simplicity. Fuzzy c-means clustering uses membership function variable, which refers to how likely the data could be members into a cluster. Fuzzy c-means clustering works using the principle of minimizing the objective function. Parameters of membership function in fuzzy are used as a weighting factor which is also called the fuzzier. In this study we implement hybrid clustering using fuzzy c-means and divisive algorithm which could improve the accuracy of cluster membership compare to traditional partitional approach only. In this study fuzzy c-means is used in the first step to find partition results. Furthermore divisive algorithms will run on the second step to find sub-clusters and dendogram of phylogenetic tree. To find the best number of clusters is determined using the minimum value of Davies Bouldin Index (DBI) of the cluster results. In this research, the results show that the methods introduced in this paper is better than other partitioning methods. Finally, we found 3 clusters with DBI value of 1.126628 at first step of clustering. Moreover, DBI values after implementing the second step of clustering are always producing smaller IDB values compare to the results of using first step clustering only. This condition indicates that the hybrid approach in this study produce better performance of the cluster results, in term its DBI values.
Radiation Pattern Reconstruction from the Near-Field Amplitude Measurement on Two Planes Using PSO
Directory of Open Access Journals (Sweden)
Z. Novacek
2005-12-01
Full Text Available The paper presents a new approach to the radiation patternreconstruction from near-field amplitude only measurement over a twoplanar scanning surfaces. This new method for antenna patternreconstruction is based on the global optimization PSO (Particle SwarmOptimization. The paper presents appropriate phaseless measurementrequirements and phase retrieval algorithm together with a briefdescription of the particle swarm optimization method. In order toexamine the methodologies developed in this paper, phaselessmeasurement results for two different antennas are presented andcompared to results obtained by a complex measurement (amplitude andphase.
Yu, Miao; Li, Yan; Shu, Tong; Zhang, Yifan; Hong, Xiaobin; Qiu, Jifang; Zuo, Yong; Guo, Hongxiang; Li, Wei; Wu, Jian
2018-02-01
A method of recognizing 16QAM signal based on k-means clustering algorithm is proposed to mitigate the impact of transmitter finite extinction ratio. There are pilot symbols with 0.39% overhead assigned to be regarded as initial centroids of k-means clustering algorithm. Simulation result in 10 GBaud 16QAM system shows that the proposed method obtains higher precision of identification compared with traditional decision method for finite ER and IQ mismatch. Specially, the proposed method improves the required OSNR by 5.5 dB, 4.5 dB, 4 dB and 3 dB at FEC limit with ER= 12 dB, 16 dB, 20 dB and 24 dB, respectively, and the acceptable bias error and IQ mismatch range is widened by 767% and 360% with ER =16 dB, respectively.
TOWARDS FINDING A NEW KERNELIZED FUZZY C-MEANS CLUSTERING ALGORITHM
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Samarjit Das
2014-04-01
Full Text Available Kernelized Fuzzy C-Means clustering technique is an attempt to improve the performance of the conventional Fuzzy C-Means clustering technique. Recently this technique where a kernel-induced distance function is used as a similarity measure instead of a Euclidean distance which is used in the conventional Fuzzy C-Means clustering technique, has earned popularity among research community. Like the conventional Fuzzy C-Means clustering technique this technique also suffers from inconsistency in its performance due to the fact that here also the initial centroids are obtained based on the randomly initialized membership values of the objects. Our present work proposes a new method where we have applied the Subtractive clustering technique of Chiu as a preprocessor to Kernelized Fuzzy CMeans clustering technique. With this new method we have tried not only to remove the inconsistency of Kernelized Fuzzy C-Means clustering technique but also to deal with the situations where the number of clusters is not predetermined. We have also provided a comparison of our method with the Subtractive clustering technique of Chiu and Kernelized Fuzzy C-Means clustering technique using two validity measures namely Partition Coefficient and Clustering Entropy.
Yang, Liu; Lu, Yinzhi; Zhong, Yuanchang; Wu, Xuegang; Yang, Simon X
2015-12-26
Energy resource limitation is a severe problem in traditional wireless sensor networks (WSNs) because it restricts the lifetime of network. Recently, the emergence of energy harvesting techniques has brought with them the expectation to overcome this problem. In particular, it is possible for a sensor node with energy harvesting abilities to work perpetually in an Energy Neutral state. In this paper, a Multi-hop Energy Neutral Clustering (MENC) algorithm is proposed to construct the optimal multi-hop clustering architecture in energy harvesting WSNs, with the goal of achieving perpetual network operation. All cluster heads (CHs) in the network act as routers to transmit data to base station (BS) cooperatively by a multi-hop communication method. In addition, by analyzing the energy consumption of intra- and inter-cluster data transmission, we give the energy neutrality constraints. Under these constraints, every sensor node can work in an energy neutral state, which in turn provides perpetual network operation. Furthermore, the minimum network data transmission cycle is mathematically derived using convex optimization techniques while the network information gathering is maximal. Simulation results show that our protocol can achieve perpetual network operation, so that the consistent data delivery is guaranteed. In addition, substantial improvements on the performance of network throughput are also achieved as compared to the famous traditional clustering protocol LEACH and recent energy harvesting aware clustering protocols.
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Liu Yang
2015-12-01
Full Text Available Energy resource limitation is a severe problem in traditional wireless sensor networks (WSNs because it restricts the lifetime of network. Recently, the emergence of energy harvesting techniques has brought with them the expectation to overcome this problem. In particular, it is possible for a sensor node with energy harvesting abilities to work perpetually in an Energy Neutral state. In this paper, a Multi-hop Energy Neutral Clustering (MENC algorithm is proposed to construct the optimal multi-hop clustering architecture in energy harvesting WSNs, with the goal of achieving perpetual network operation. All cluster heads (CHs in the network act as routers to transmit data to base station (BS cooperatively by a multi-hop communication method. In addition, by analyzing the energy consumption of intra- and inter-cluster data transmission, we give the energy neutrality constraints. Under these constraints, every sensor node can work in an energy neutral state, which in turn provides perpetual network operation. Furthermore, the minimum network data transmission cycle is mathematically derived using convex optimization techniques while the network information gathering is maximal. Simulation results show that our protocol can achieve perpetual network operation, so that the consistent data delivery is guaranteed. In addition, substantial improvements on the performance of network throughput are also achieved as compared to the famous traditional clustering protocol LEACH and recent energy harvesting aware clustering protocols.
Yang, Liu; Lu, Yinzhi; Zhong, Yuanchang; Wu, Xuegang; Yang, Simon X.
2015-01-01
Energy resource limitation is a severe problem in traditional wireless sensor networks (WSNs) because it restricts the lifetime of network. Recently, the emergence of energy harvesting techniques has brought with them the expectation to overcome this problem. In particular, it is possible for a sensor node with energy harvesting abilities to work perpetually in an Energy Neutral state. In this paper, a Multi-hop Energy Neutral Clustering (MENC) algorithm is proposed to construct the optimal m...
Directory of Open Access Journals (Sweden)
Matthew Z. DeMaere
2016-11-01
Full Text Available Background Chromosome conformation capture, coupled with high throughput DNA sequencing in protocols like Hi-C and 3C-seq, has been proposed as a viable means of generating data to resolve the genomes of microorganisms living in naturally occuring environments. Metagenomic Hi-C and 3C-seq datasets have begun to emerge, but the feasibility of resolving genomes when closely related organisms (strain-level diversity are present in the sample has not yet been systematically characterised. Methods We developed a computational simulation pipeline for metagenomic 3C and Hi-C sequencing to evaluate the accuracy of genomic reconstructions at, above, and below an operationally defined species boundary. We simulated datasets and measured accuracy over a wide range of parameters. Five clustering algorithms were evaluated (2 hard, 3 soft using an adaptation of the extended B-cubed validation measure. Results When all genomes in a sample are below 95% sequence identity, all of the tested clustering algorithms performed well. When sequence data contains genomes above 95% identity (our operational definition of strain-level diversity, a naive soft-clustering extension of the Louvain method achieves the highest performance. Discussion Previously, only hard-clustering algorithms have been applied to metagenomic 3C and Hi-C data, yet none of these perform well when strain-level diversity exists in a metagenomic sample. Our simple extension of the Louvain method performed the best in these scenarios, however, accuracy remained well below the levels observed for samples without strain-level diversity. Strain resolution is also highly dependent on the amount of available 3C sequence data, suggesting that depth of sequencing must be carefully considered during experimental design. Finally, there appears to be great scope to improve the accuracy of strain resolution through further algorithm development.
Directory of Open Access Journals (Sweden)
Kateryna Novokhatska
2016-03-01
Full Text Available In recent years, materialized views (MVs are widely used to enhance the database performance by storing pre-calculated results of resource-intensive queries in the physical memory. In order to identify which queries may be potentially materialized, database transaction log for a long period of time should be analyzed. The goal of analysis is to distinguish resource-intensive and frequently used queries collected from database log, and optimize these queries by implementation of MVs. In order to achieve greater efficiency of MVs, they were used not only for the optimization of single queries, but also for entire groups of queries that are similar in syntax and execution results. Thus, the problem stated in this article is the development of approach that will allow forming groups of queries with similar syntax around the most resource-intensive queries in order to identify the list of potential candidates for materialization. For solving this problem, we have applied the algorithm of categorical data clustering to the query grouping problem on the step of database log analysis and searching candidates for materialization. In the current work CLOPE algorithm was modified to cover the introduced problem. Statistical and timing indicators were taken into account in order to form the clusters around the most resource intensive queries. Application of modified algorithm CLOPE allowed to decrease calculable complexity of clustering and to enhance the quality of formed groups.
BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data
2013-01-01
Background The explosion of biological data has dramatically reformed today's biology research. The biggest challenge to biologists and bioinformaticians is the integration and analysis of large quantity of data to provide meaningful insights. One major problem is the combined analysis of data from different types. Bi-cluster editing, as a special case of clustering, which partitions two different types of data simultaneously, might be used for several biomedical scenarios. However, the underlying algorithmic problem is NP-hard. Results Here we contribute with BiCluE, a software package designed to solve the weighted bi-cluster editing problem. It implements (1) an exact algorithm based on fixed-parameter tractability and (2) a polynomial-time greedy heuristics based on solving the hardest part, edge deletions, first. We evaluated its performance on artificial graphs. Afterwards we exemplarily applied our implementation on real world biomedical data, GWAS data in this case. BiCluE generally works on any kind of data types that can be modeled as (weighted or unweighted) bipartite graphs. Conclusions To our knowledge, this is the first software package solving the weighted bi-cluster editing problem. BiCluE as well as the supplementary results are available online at http://biclue.mpi-inf.mpg.de. PMID:24565035
Sumithra, Subramaniam; Victoire, T Aruldoss Albert
2015-01-01
Due to large dimension of clusters and increasing size of sensor nodes, finding the optimal route and cluster for large wireless sensor networks (WSN) seems to be highly complex and cumbersome. This paper proposes a new method to determine a reasonably better solution of the clustering and routing problem with the highest concern of efficient energy consumption of the sensor nodes for extending network life time. The proposed method is based on the Differential Evolution (DE) algorithm with an improvised search operator called Diversified Vicinity Procedure (DVP), which models a trade-off between energy consumption of the cluster heads and delay in forwarding the data packets. The obtained route using the proposed method from all the gateways to the base station is comparatively lesser in overall distance with less number of data forwards. Extensive numerical experiments demonstrate the superiority of the proposed method in managing energy consumption of the WSN and the results are compared with the other algorithms reported in the literature.
Indian Academy of Sciences (India)
In the description of algorithms and programming languages, what is the role of control abstraction? • What are the inherent limitations of the algorithmic processes? In future articles in this series, we will show that these constructs are powerful and can be used to encode any algorithm. In the next article, we will discuss ...
Directory of Open Access Journals (Sweden)
Haodong Yuan
2017-01-01
Full Text Available A novel bearing fault diagnosis method based on improved locality-constrained linear coding (LLC and adaptive PSO-optimized support vector machine (SVM is proposed. In traditional LLC, each feature is encoded by using a fixed number of bases without considering the distribution of the features and the weight of the bases. To address these problems, an improved LLC algorithm based on adaptive and weighted bases is proposed. Firstly, preliminary features are obtained by wavelet packet node energy. Then, dictionary learning with class-wise K-SVD algorithm is implemented. Subsequently, based on the learned dictionary the LLC codes can be solved using the improved LLC algorithm. Finally, SVM optimized by adaptive particle swarm optimization (PSO is utilized to classify the discriminative LLC codes and thus bearing fault diagnosis is realized. In the dictionary leaning stage, other methods such as selecting the samples themselves as dictionary and K-means are also conducted for comparison. The experiment results show that the LLC codes can effectively extract the bearing fault characteristics and the improved LLC outperforms traditional LLC. The dictionary learned by class-wise K-SVD achieves the best performance. Additionally, adaptive PSO-optimized SVM can greatly enhance the classification accuracy comparing with SVM using default parameters and linear SVM.
DEFF Research Database (Denmark)
Vesterstrøm, Jacob Svaneborg; Thomsen, Rene
2004-01-01
Several extensions to evolutionary algorithms (EAs) and particle swarm optimization (PSO) have been suggested during the last decades offering improved performance on selected benchmark problems. Recently, another search heuristic termed differential evolution (DE) has shown superior performance...... outperforms the other algorithms. However, on two noisy functions, both DE and PSO were outperformed by the EA....
Directory of Open Access Journals (Sweden)
Zhang Aidong
2008-01-01
Full Text Available Abstract Background Quantitative characterization of the topological characteristics of protein-protein interaction (PPI networks can enable the elucidation of biological functional modules. Here, we present a novel clustering methodology for PPI networks wherein the biological and topological influence of each protein on other proteins is modeled using the probability distribution that the series of interactions necessary to link a pair of distant proteins in the network occur within a time constant (the occurrence probability. Results CASCADE selects representative nodes for each cluster and iteratively refines clusters based on a combination of the occurrence probability and graph topology between every protein pair. The CASCADE approach is compared to nine competing approaches. The clusters obtained by each technique are compared for enrichment of biological function. CASCADE generates larger clusters and the clusters identified have p-values for biological function that are approximately 1000-fold better than the other methods on the yeast PPI network dataset. An important strength of CASCADE is that the percentage of proteins that are discarded to create clusters is much lower than the other approaches which have an average discard rate of 45% on the yeast protein-protein interaction network. Conclusion CASCADE is effective at detecting biologically relevant clusters of interactions.
A neural network clustering algorithm for the ATLAS silicon pixel detector
Aad, Georges; Abdallah, Jalal; Abdel Khalek, Samah; Abdinov, Ovsat; Aben, Rosemarie; Abi, Babak; Abolins, Maris; AbouZeid, Ossama; Abramowicz, Halina; Abreu, Henso; Abreu, Ricardo; Abulaiti, Yiming; Acharya, Bobby Samir; Adamczyk, Leszek; Adams, David; Adelman, Jahred; Adomeit, Stefanie; Adye, Tim; Agatonovic-Jovin, Tatjana; Aguilar-Saavedra, Juan Antonio; Agustoni, Marco; Ahlen, Steven; Ahmadov, Faig; Aielli, Giulio; Akerstedt, Henrik; Åkesson, Torsten Paul Ake; Akimoto, Ginga; Akimov, Andrei; Alberghi, Gian Luigi; Albert, Justin; Albrand, Solveig; Alconada Verzini, Maria Josefina; Aleksa, Martin; Aleksandrov, Igor; Alexa, Calin; Alexander, Gideon; Alexandre, Gauthier; Alexopoulos, Theodoros; Alhroob, Muhammad; Alimonti, Gianluca; Alio, Lion; Alison, John; Allbrooke, Benedict; Allison, Lee John; Allport, Phillip; Almond, John; Aloisio, Alberto; Alonso, Alejandro; Alonso, Francisco; Alpigiani, Cristiano; Altheimer, Andrew David; Alvarez Gonzalez, Barbara; Alviggi, Mariagrazia; Amako, Katsuya; Amaral Coutinho, Yara; Amelung, Christoph; Amidei, Dante; Amor Dos Santos, Susana Patricia; Amorim, Antonio; Amoroso, Simone; Amram, Nir; Amundsen, Glenn; Anastopoulos, Christos; Ancu, Lucian Stefan; Andari, Nansi; Andeen, Timothy; Anders, Christoph Falk; Anders, Gabriel; Anderson, Kelby; Andreazza, Attilio; Andrei, George Victor; Anduaga, Xabier; Angelidakis, Stylianos; Angelozzi, Ivan; Anger, Philipp; Angerami, Aaron; Anghinolfi, Francis; Anisenkov, Alexey; Anjos, Nuno; Annovi, Alberto; Antonaki, Ariadni; Antonelli, Mario; Antonov, Alexey; Antos, Jaroslav; Anulli, Fabio; Aoki, Masato; Aperio Bella, Ludovica; Apolle, Rudi; Arabidze, Giorgi; Aracena, Ignacio; Arai, Yasuo; Araque, Juan Pedro; Arce, Ayana; Arguin, Jean-Francois; Argyropoulos, Spyridon; Arik, Metin; Armbruster, Aaron James; Arnaez, Olivier; Arnal, Vanessa; Arnold, Hannah; Arratia, Miguel; Arslan, Ozan; Artamonov, Andrei; Artoni, Giacomo; Asai, Shoji; Asbah, Nedaa; Ashkenazi, Adi; Åsman, Barbro; Asquith, Lily; Assamagan, Ketevi; Astalos, Robert; Atkinson, Markus; Atlay, Naim Bora; Auerbach, Benjamin; Augsten, Kamil; Aurousseau, Mathieu; Avolio, Giuseppe; Azuelos, Georges; Azuma, Yuya; Baak, Max; Baas, Alessandra; Bacci, Cesare; Bachacou, Henri; Bachas, Konstantinos; Backes, Moritz; Backhaus, Malte; Backus Mayes, John; Badescu, Elisabeta; Bagiacchi, Paolo; Bagnaia, Paolo; Bai, Yu; Bain, Travis; Baines, John; Baker, Oliver Keith; Balek, Petr; Balli, Fabrice; Banas, Elzbieta; Banerjee, Swagato; Bannoura, Arwa A E; Bansal, Vikas; Bansil, Hardeep Singh; Barak, Liron; Baranov, Sergei; Barberio, Elisabetta Luigia; Barberis, Dario; Barbero, Marlon; Barillari, Teresa; Barisonzi, Marcello; Barklow, Timothy; Barlow, Nick; Barnett, Bruce; Barnett, Michael; Barnovska, Zuzana; Baroncelli, Antonio; Barone, Gaetano; Barr, Alan; Barreiro, Fernando; Barreiro Guimarães da Costa, João; Bartoldus, Rainer; Barton, Adam Edward; Bartos, Pavol; Bartsch, Valeria; Bassalat, Ahmed; Basye, Austin; Bates, Richard; Batkova, Lucia; Batley, Richard; Battaglia, Marco; Battistin, Michele; Bauer, Florian; Bawa, Harinder Singh; Beau, Tristan; Beauchemin, Pierre-Hugues; Beccherle, Roberto; Bechtle, Philip; Beck, Hans Peter; Becker, Anne Kathrin; Becker, Sebastian; Beckingham, Matthew; Becot, Cyril; Beddall, Andrew; Beddall, Ayda; Bedikian, Sourpouhi; Bednyakov, Vadim; Bee, Christopher; Beemster, Lars; Beermann, Thomas; Begel, Michael; Behr, Katharina; Belanger-Champagne, Camille; Bell, Paul; Bell, William; Bella, Gideon; Bellagamba, Lorenzo; Bellerive, Alain; Bellomo, Massimiliano; Belotskiy, Konstantin; Beltramello, Olga; Benary, Odette; Benchekroun, Driss; Bendtz, Katarina; Benekos, Nektarios; Benhammou, Yan; Benhar Noccioli, Eleonora; Benitez Garcia, Jorge-Armando; Benjamin, Douglas; Bensinger, James; Benslama, Kamal; Bentvelsen, Stan; Berge, David; Bergeaas Kuutmann, Elin; Berger, Nicolas; Berghaus, Frank; Beringer, Jürg; Bernard, Clare; Bernat, Pauline; Bernius, Catrin; Bernlochner, Florian Urs; Berry, Tracey; Berta, Peter; Bertella, Claudia; Bertoli, Gabriele; Bertolucci, Federico; Bertsche, David; Besana, Maria Ilaria; Besjes, Geert-Jan; Bessidskaia, Olga; Bessner, Martin Florian; Besson, Nathalie; Betancourt, Christopher; Bethke, Siegfried; Bhimji, Wahid; Bianchi, Riccardo-Maria; Bianchini, Louis; Bianco, Michele; Biebel, Otmar; Bieniek, Stephen Paul; Bierwagen, Katharina; Biesiada, Jed; Biglietti, Michela; Bilbao De Mendizabal, Javier; Bilokon, Halina; Bindi, Marcello; Binet, Sebastien; Bingul, Ahmet; Bini, Cesare; Black, Curtis; Black, James; Black, Kevin; Blackburn, Daniel; Blair, Robert; Blanchard, Jean-Baptiste; Blazek, Tomas; Bloch, Ingo; Blocker, Craig; Blum, Walter; Blumenschein, Ulrike; Bobbink, Gerjan; Bobrovnikov, Victor; Bocchetta, Simona Serena; Bocci, Andrea; Bock, Christopher; Boddy, Christopher Richard; Boehler, Michael; Boek, Thorsten Tobias; Bogaerts, Joannes Andreas; Bogdanchikov, Alexander; Bogouch, Andrei; Bohm, Christian; Bohm, Jan; Boisvert, Veronique; Bold, Tomasz; Boldea, Venera; Boldyrev, Alexey; Bomben, Marco; Bona, Marcella; Boonekamp, Maarten; Borisov, Anatoly; Borissov, Guennadi; Borri, Marcello; Borroni, Sara; Bortfeldt, Jonathan; Bortolotto, Valerio; Bos, Kors; Boscherini, Davide; Bosman, Martine; Boterenbrood, Hendrik; Boudreau, Joseph; Bouffard, Julian; Bouhova-Thacker, Evelina Vassileva; Boumediene, Djamel Eddine; Bourdarios, Claire; Bousson, Nicolas; Boutouil, Sara; Boveia, Antonio; Boyd, James; Boyko, Igor; Bracinik, Juraj; Brandt, Andrew; Brandt, Gerhard; Brandt, Oleg; Bratzler, Uwe; Brau, Benjamin; Brau, James; Braun, Helmut; Brazzale, Simone Federico; Brelier, Bertrand; Brendlinger, Kurt; Brennan, Amelia Jean; Brenner, Richard; Bressler, Shikma; Bristow, Kieran; Bristow, Timothy Michael; Britton, Dave; Brochu, Frederic; Brock, Ian; Brock, Raymond; Bromberg, Carl; Bronner, Johanna; Brooijmans, Gustaaf; Brooks, Timothy; Brooks, William; Brosamer, Jacquelyn; Brost, Elizabeth; Brown, Jonathan; Bruckman de Renstrom, Pawel; Bruncko, Dusan; Bruneliere, Renaud; Brunet, Sylvie; Bruni, Alessia; Bruni, Graziano; Bruschi, Marco; Bryngemark, Lene; Buanes, Trygve; Buat, Quentin; Bucci, Francesca; Buchholz, Peter; Buckingham, Ryan; Buckley, Andrew; Buda, Stelian Ioan; Budagov, Ioulian; Buehrer, Felix; Bugge, Lars; Bugge, Magnar Kopangen; Bulekov, Oleg; Bundock, Aaron Colin; Burckhart, Helfried; Burdin, Sergey; Burghgrave, Blake; Burke, Stephen; Burmeister, Ingo; Busato, Emmanuel; Büscher, Daniel; Büscher, Volker; Bussey, Peter; Buszello, Claus-Peter; Butler, Bart; Butler, John; Butt, Aatif Imtiaz; Buttar, Craig; Butterworth, Jonathan; Butti, Pierfrancesco; Buttinger, William; Buzatu, Adrian; Byszewski, Marcin; Cabrera Urbán, Susana; Caforio, Davide; Cakir, Orhan; Calafiura, Paolo; Calandri, Alessandro; Calderini, Giovanni; Calfayan, Philippe; Calkins, Robert; Caloba, Luiz; Calvet, David; Calvet, Samuel; Camacho Toro, Reina; Camarda, Stefano; Cameron, David; Caminada, Lea Michaela; Caminal Armadans, Roger; Campana, Simone; Campanelli, Mario; Campoverde, Angel; Canale, Vincenzo; Canepa, Anadi; Cano Bret, Marc; Cantero, Josu; Cantrill, Robert; Cao, Tingting; Capeans Garrido, Maria Del Mar; Caprini, Irinel; Caprini, Mihai; Capua, Marcella; Caputo, Regina; Cardarelli, Roberto; Carli, Tancredi; Carlino, Gianpaolo; Carminati, Leonardo; Caron, Sascha; Carquin, Edson; Carrillo-Montoya, German D; Carter, Janet; Carvalho, João; Casadei, Diego; Casado, Maria Pilar; Casolino, Mirkoantonio; Castaneda-Miranda, Elizabeth; Castelli, Angelantonio; Castillo Gimenez, Victoria; Castro, Nuno Filipe; Catastini, Pierluigi; Catinaccio, Andrea; Catmore, James; Cattai, Ariella; Cattani, Giordano; Caughron, Seth; Cavaliere, Viviana; Cavalli, Donatella; Cavalli-Sforza, Matteo; Cavasinni, Vincenzo; Ceradini, Filippo; Cerio, Benjamin; Cerny, Karel; Santiago Cerqueira, Augusto; Cerri, Alessandro; Cerrito, Lucio; Cerutti, Fabio; Cerv, Matevz; Cervelli, Alberto; Cetin, Serkant Ali; Chafaq, Aziz; Chakraborty, Dhiman; Chalupkova, Ina; Chang, Philip; Chapleau, Bertrand; Chapman, John Derek; Charfeddine, Driss; Charlton, Dave; Chau, Chav Chhiv; Chavez Barajas, Carlos Alberto; Cheatham, Susan; Chegwidden, Andrew; Chekanov, Sergei; Chekulaev, Sergey; Chelkov, Gueorgui; Chelstowska, Magda Anna; Chen, Chunhui; Chen, Hucheng; Chen, Karen; Chen, Liming; Chen, Shenjian; Chen, Xin; Chen, Yujiao; Cheng, Hok Chuen; Cheng, Yangyang; Cheplakov, Alexander; Cherkaoui El Moursli, Rajaa; Chernyatin, Valeriy; Cheu, Elliott; Chevalier, Laurent; Chiarella, Vitaliano; Chiefari, Giovanni; Childers, John Taylor; Chilingarov, Alexandre; Chiodini, Gabriele; Chisholm, Andrew; Chislett, Rebecca Thalatta; Chitan, Adrian; Chizhov, Mihail; Chouridou, Sofia; Chow, Bonnie Kar Bo; Chromek-Burckhart, Doris; Chu, Ming-Lee; Chudoba, Jiri; Chwastowski, Janusz; Chytka, Ladislav; Ciapetti, Guido; Ciftci, Abbas Kenan; Ciftci, Rena; Cinca, Diane; Cindro, Vladimir; Ciocio, Alessandra; Cirkovic, Predrag; Citron, Zvi Hirsh; Citterio, Mauro; Ciubancan, Mihai; Clark, Allan G; Clark, Philip James; Clarke, Robert; Cleland, Bill; Clemens, Jean-Claude; Clement, Christophe; Coadou, Yann; Cobal, Marina; Coccaro, Andrea; Cochran, James H; Coffey, Laurel; Cogan, Joshua Godfrey; Coggeshall, James; Cole, Brian; Cole, Stephen; Colijn, Auke-Pieter; Collot, Johann; Colombo, Tommaso; Colon, German; Compostella, Gabriele; Conde Muiño, Patricia; Coniavitis, Elias; Conidi, Maria Chiara; Connell, Simon Henry; Connelly, Ian; Consonni, Sofia Maria; Consorti, Valerio; Constantinescu, Serban; Conta, Claudio; Conti, Geraldine; Conventi, Francesco; Cooke, Mark; Cooper, Ben; Cooper-Sarkar, Amanda; Cooper-Smith, Neil; Copic, Katherine; Cornelissen, Thijs; Corradi, Massimo; Corriveau, Francois; Corso-Radu, Alina; Cortes-Gonzalez, Arely; Cortiana, Giorgio; Costa, Giuseppe; Costa, María José; Costanzo, Davide; Côté, David; Cottin, Giovanna; Cowan, Glen; Cox, Brian; Cranmer, Kyle; Cree, Graham; Crépé-Renaudin, Sabine; Crescioli, Francesco; Cribbs, Wayne Allen; Crispin Ortuzar, Mireia; Cristinziani, Markus; Croft, Vince; Crosetti, Giovanni; Cuciuc, Constantin-Mihai; Cuhadar Donszelmann, Tulay; Cummings, Jane; Curatolo, Maria; Cuthbert, Cameron; Czirr, Hendrik; Czodrowski, Patrick; Czyczula, Zofia; D'Auria, Saverio; D'Onofrio, Monica; Da Cunha Sargedas De Sousa, Mario Jose; Da Via, Cinzia; Dabrowski, Wladyslaw; Dafinca, Alexandru; Dai, Tiesheng; Dale, Orjan; Dallaire, Frederick; Dallapiccola, Carlo; Dam, Mogens; Daniells, Andrew Christopher; Dano Hoffmann, Maria; Dao, Valerio; Darbo, Giovanni; Darmora, Smita; Dassoulas, James; Dattagupta, Aparajita; Davey, Will; David, Claire; Davidek, Tomas; Davies, Eleanor; Davies, Merlin; Davignon, Olivier; Davison, Adam; Davison, Peter; Davygora, Yuriy; Dawe, Edmund; Dawson, Ian; Daya-Ishmukhametova, Rozmin; De, Kaushik; de Asmundis, Riccardo; De Castro, Stefano; De Cecco, Sandro; De Groot, Nicolo; de Jong, Paul; De la Torre, Hector; De Lorenzi, Francesco; De Nooij, Lucie; De Pedis, Daniele; De Salvo, Alessandro; De Sanctis, Umberto; De Santo, Antonella; De Vivie De Regie, Jean-Baptiste; Dearnaley, William James; Debbe, Ramiro; Debenedetti, Chiara; Dechenaux, Benjamin; Dedovich, Dmitri; Deigaard, Ingrid; Del Peso, Jose; Del Prete, Tarcisio; Deliot, Frederic; Delitzsch, Chris Malena; Deliyergiyev, Maksym; Dell'Acqua, Andrea; Dell'Asta, Lidia; Dell'Orso, Mauro; Della Pietra, Massimo; della Volpe, Domenico; Delmastro, Marco; Delsart, Pierre-Antoine; Deluca, Carolina; Demers, Sarah; Demichev, Mikhail; Demilly, Aurelien; Denisov, Sergey; Derendarz, Dominik; Derkaoui, Jamal Eddine; Derue, Frederic; Dervan, Paul; Desch, Klaus Kurt; Deterre, Cecile; Deviveiros, Pier-Olivier; Dewhurst, Alastair; Dhaliwal, Saminder; Di Ciaccio, Anna; Di Ciaccio, Lucia; Di Domenico, Antonio; Di Donato, Camilla; Di Girolamo, Alessandro; Di Girolamo, Beniamino; Di Mattia, Alessandro; Di Micco, Biagio; Di Nardo, Roberto; Di Simone, Andrea; Di Sipio, Riccardo; Di Valentino, David; Dias, Flavia; Diaz, Marco Aurelio; Diehl, Edward; Dietrich, Janet; Dietzsch, Thorsten; Diglio, Sara; Dimitrievska, Aleksandra; Dingfelder, Jochen; Dionisi, Carlo; Dita, Petre; Dita, Sanda; Dittus, Fridolin; Djama, Fares; Djobava, Tamar; Barros do Vale, Maria Aline; Do Valle Wemans, André; Doan, Thi Kieu Oanh; Dobos, Daniel; Doglioni, Caterina; Doherty, Tom; Dohmae, Takeshi; Dolejsi, Jiri; Dolezal, Zdenek; Dolgoshein, Boris; Donadelli, Marisilvia; Donati, Simone; Dondero, Paolo; Donini, Julien; Dopke, Jens; Doria, Alessandra; Dova, Maria-Teresa; Doyle, Tony; Dris, Manolis; Dubbert, Jörg; Dube, Sourabh; Dubreuil, Emmanuelle; Duchovni, Ehud; Duckeck, Guenter; Ducu, Otilia Anamaria; Duda, Dominik; Dudarev, Alexey; Dudziak, Fanny; Duflot, Laurent; Duguid, Liam; Dührssen, Michael; Dunford, Monica; Duran Yildiz, Hatice; Düren, Michael; Durglishvili, Archil; Dwuznik, Michal; Dyndal, Mateusz; Ebke, Johannes; Edson, William; Edwards, Nicholas Charles; Ehrenfeld, Wolfgang; Eifert, Till; Eigen, Gerald; Einsweiler, Kevin; Ekelof, Tord; El Kacimi, Mohamed; Ellert, Mattias; Elles, Sabine; Ellinghaus, Frank; Ellis, Nicolas; Elmsheuser, Johannes; Elsing, Markus; Emeliyanov, Dmitry; Enari, Yuji; Endner, Oliver Chris; Endo, Masaki; Engelmann, Roderich; Erdmann, Johannes; Ereditato, Antonio; Eriksson, Daniel; Ernis, Gunar; Ernst, Jesse; Ernst, Michael; Ernwein, Jean; Errede, Deborah; Errede, Steven; Ertel, Eugen; Escalier, Marc; Esch, Hendrik; Escobar, Carlos; Esposito, Bellisario; Etienvre, Anne-Isabelle; Etzion, Erez; Evans, Hal; Ezhilov, Alexey; Fabbri, Laura; Facini, Gabriel; Fakhrutdinov, Rinat; Falciano, Speranza; Falla, Rebecca Jane; Faltova, Jana; Fang, Yaquan; Fanti, Marcello; Farbin, Amir; Farilla, Addolorata; Farooque, Trisha; Farrell, Steven; Farrington, Sinead; Farthouat, Philippe; Fassi, Farida; Fassnacht, Patrick; Fassouliotis, Dimitrios; Favareto, Andrea; Fayard, Louis; Federic, Pavol; Fedin, Oleg; Fedorko, Wojciech; Fehling-Kaschek, Mirjam; Feigl, Simon; Feligioni, Lorenzo; Feng, Cunfeng; Feng, Eric; Feng, Haolu; Fenyuk, Alexander; Fernandez Perez, Sonia; Ferrag, Samir; Ferrando, James; Ferrari, Arnaud; Ferrari, Pamela; Ferrari, Roberto; Ferreira de Lima, Danilo Enoque; Ferrer, Antonio; Ferrere, Didier; Ferretti, Claudio; Ferretto Parodi, Andrea; Fiascaris, Maria; Fiedler, Frank; Filipčič, Andrej; Filipuzzi, Marco; Filthaut, Frank; Fincke-Keeler, Margret; Finelli, Kevin Daniel; Fiolhais, Miguel; Fiorini, Luca; Firan, Ana; Fischer, Adam; Fischer, Julia; Fisher, Wade Cameron; Fitzgerald, Eric Andrew; Flechl, Martin; Fleck, Ivor; Fleischmann, Philipp; Fleischmann, Sebastian; Fletcher, Gareth Thomas; Fletcher, Gregory; Flick, Tobias; Floderus, Anders; Flores Castillo, Luis; Florez Bustos, Andres Carlos; Flowerdew, Michael; Formica, Andrea; Forti, Alessandra; Fortin, Dominique; Fournier, Daniel; Fox, Harald; Fracchia, Silvia; Francavilla, Paolo; Franchini, Matteo; Franchino, Silvia; Francis, David; Franklin, Melissa; Franz, Sebastien; Fraternali, Marco; French, Sky; Friedrich, Conrad; Friedrich, Felix; Froidevaux, Daniel; Frost, James; Fukunaga, Chikara; Fullana Torregrosa, Esteban; Fulsom, Bryan Gregory; Fuster, Juan; Gabaldon, Carolina; Gabizon, Ofir; Gabrielli, Alessandro; Gabrielli, Andrea; Gadatsch, Stefan; Gadomski, Szymon; Gagliardi, Guido; Gagnon, Pauline; Galea, Cristina; Galhardo, Bruno; Gallas, Elizabeth; Gallo, Valentina Santina; Gallop, Bruce; Gallus, Petr; Galster, Gorm Aske Gram Krohn; Gan, KK; Gandrajula, Reddy Pratap; Gao, Jun; Gao, Yongsheng; Garay Walls, Francisca; Garberson, Ford; García, Carmen; García Navarro, José Enrique; Garcia-Sciveres, Maurice; Gardner, Robert; Garelli, Nicoletta; Garonne, Vincent; Gatti, Claudio; Gaudio, Gabriella; Gaur, Bakul; Gauthier, Lea; Gauzzi, Paolo; Gavrilenko, Igor; Gay, Colin; Gaycken, Goetz; Gazis, Evangelos; Ge, Peng; Gecse, Zoltan; Gee, Norman; Geerts, Daniël Alphonsus Adrianus; Geich-Gimbel, Christoph; Gellerstedt, Karl; Gemme, Claudia; Gemmell, Alistair; Genest, Marie-Hélène; Gentile, Simonetta; George, Matthias; George, Simon; Gerbaudo, Davide; Gershon, Avi; Ghazlane, Hamid; Ghodbane, Nabil; Giacobbe, Benedetto; Giagu, Stefano; Giangiobbe, Vincent; Giannetti, Paola; Gianotti, Fabiola; Gibbard, Bruce; Gibson, Stephen; Gilchriese, Murdock; Gillam, Thomas; Gillberg, Dag; Gilles, Geoffrey; Gingrich, Douglas; Giokaris, Nikos; Giordani, MarioPaolo; Giordano, Raffaele; Giorgi, Filippo Maria; Giorgi, Francesco Michelangelo; Giraud, Pierre-Francois; Giugni, Danilo; Giuliani, Claudia; Giulini, Maddalena; Gjelsten, Børge Kile; Gkaitatzis, Stamatios; Gkialas, Ioannis; Gladilin, Leonid; Glasman, Claudia; Glatzer, Julian; Glaysher, Paul; Glazov, Alexandre; Glonti, George; Goblirsch-Kolb, Maximilian; Goddard, Jack Robert; Godfrey, Jennifer; Godlewski, Jan; Goeringer, Christian; Goldfarb, Steven; Golling, Tobias; Golubkov, Dmitry; Gomes, Agostinho; Gomez Fajardo, Luz Stella; Gonçalo, Ricardo; Goncalves Pinto Firmino Da Costa, Joao; Gonella, Laura; González de la Hoz, Santiago; Gonzalez Parra, Garoe; Gonzalez-Sevilla, Sergio; Goossens, Luc; Gorbounov, Petr Andreevich; Gordon, Howard; Gorelov, Igor; Gorini, Benedetto; Gorini, Edoardo; Gorišek, Andrej; Gornicki, Edward; Goshaw, Alfred; Gössling, Claus; Gostkin, Mikhail Ivanovitch; Gouighri, Mohamed; Goujdami, Driss; Goulette, Marc Phillippe; Goussiou, Anna; Goy, Corinne; Gozpinar, Serdar; Grabas, Herve Marie Xavier; Graber, Lars; Grabowska-Bold, Iwona; Grafström, Per; Grahn, Karl-Johan; Gramling, Johanna; Gramstad, Eirik; Grancagnolo, Sergio; Grassi, Valerio; Gratchev, Vadim; Gray, Heather; Graziani, Enrico; Grebenyuk, Oleg; Greenwood, Zeno Dixon; Gregersen, Kristian; Gregor, Ingrid-Maria; Grenier, Philippe; Griffiths, Justin; Grillo, Alexander; Grimm, Kathryn; Grinstein, Sebastian; Gris, Philippe Luc Yves; Grishkevich, Yaroslav; Grivaz, Jean-Francois; Grohs, Johannes Philipp; Grohsjean, Alexander; Gross, Eilam; Grosse-Knetter, Joern; Grossi, Giulio Cornelio; Groth-Jensen, Jacob; Grout, Zara Jane; Guan, Liang; Guescini, Francesco; Guest, Daniel; Gueta, Orel; Guicheney, Christophe; Guido, Elisa; Guillemin, Thibault; Guindon, Stefan; Gul, Umar; Gumpert, Christian; Gunther, Jaroslav; Guo, Jun; Gupta, Shaun; Gutierrez, Phillip; Gutierrez Ortiz, Nicolas Gilberto; Gutschow, Christian; Guttman, Nir; Guyot, Claude; Gwenlan, Claire; Gwilliam, Carl; Haas, Andy; Haber, Carl; Hadavand, Haleh Khani; Haddad, Nacim; Haefner, Petra; Hageböck, Stephan; Hajduk, Zbigniew; Hakobyan, Hrachya; Haleem, Mahsana; Hall, David; Halladjian, Garabed; Hamacher, Klaus; Hamal, Petr; Hamano, Kenji; Hamer, Matthias; Hamilton, Andrew; Hamilton, Samuel; Hamnett, Phillip George; Han, Liang; Hanagaki, Kazunori; Hanawa, Keita; Hance, Michael; Hanke, Paul; Hanna, Remie; Hansen, Jørgen Beck; Hansen, Jorn Dines; Hansen, Peter Henrik; Hara, Kazuhiko; Hard, Andrew; Harenberg, Torsten; Hariri, Faten; Harkusha, Siarhei; Harper, Devin; Harrington, Robert; Harris, Orin; Harrison, Paul Fraser; Hartjes, Fred; Hasegawa, Satoshi; Hasegawa, Yoji; Hasib, A; Hassani, Samira; Haug, Sigve; Hauschild, Michael; Hauser, Reiner; Havranek, Miroslav; Hawkes, Christopher; Hawkings, Richard John; Hawkins, Anthony David; Hayashi, Takayasu; Hayden, Daniel; Hays, Chris; Hayward, Helen; Haywood, Stephen; Head, Simon; Heck, Tobias; Hedberg, Vincent; Heelan, Louise; Heim, Sarah; Heim, Timon; Heinemann, Beate; Heinrich, Lukas; Hejbal, Jiri; Helary, Louis; Heller, Claudio; Heller, Matthieu; Hellman, Sten; Hellmich, Dennis; Helsens, Clement; Henderson, James; Henderson, Robert; Heng, Yang; Hengler, Christopher; Henrichs, Anna; Henriques Correia, Ana Maria; Henrot-Versille, Sophie; Hensel, Carsten; Herbert, Geoffrey Henry; Hernández Jiménez, Yesenia; Herrberg-Schubert, Ruth; Herten, Gregor; Hertenberger, Ralf; Hervas, Luis; Hesketh, Gavin Grant; Hessey, Nigel; Hickling, Robert; Higón-Rodriguez, Emilio; Hill, Ewan; Hill, John; Hiller, Karl Heinz; Hillert, Sonja; Hillier, Stephen; Hinchliffe, Ian; Hines, Elizabeth; Hirose, Minoru; Hirschbuehl, Dominic; Hobbs, John; Hod, Noam; Hodgkinson, Mark; Hodgson, Paul; Hoecker, Andreas; Hoeferkamp, Martin; Hoffman, Julia; Hoffmann, Dirk; Hofmann, Julia Isabell; Hohlfeld, Marc; Holmes, Tova Ray; Hong, Tae Min; Hooft van Huysduynen, Loek; Hostachy, Jean-Yves; Hou, Suen; Hoummada, Abdeslam; Howard, Jacob; Howarth, James; Hrabovsky, Miroslav; Hristova, Ivana; Hrivnac, Julius; Hryn'ova, Tetiana; Hsu, Catherine; Hsu, Pai-hsien Jennifer; Hsu, Shih-Chieh; Hu, Diedi; Hu, Xueye; Huang, Yanping; Hubacek, Zdenek; Hubaut, Fabrice; Huegging, Fabian; Huffman, Todd Brian; Hughes, Emlyn; Hughes, Gareth; Huhtinen, Mika; Hülsing, Tobias Alexander; Hurwitz, Martina; Huseynov, Nazim; Huston, Joey; Huth, John; Iacobucci, Giuseppe; Iakovidis, Georgios; Ibragimov, Iskander; Iconomidou-Fayard, Lydia; Ideal, Emma; Iengo, Paolo; Igonkina, Olga; Iizawa, Tomoya; Ikegami, Yoichi; Ikematsu, Katsumasa; Ikeno, Masahiro; Ilchenko, Iurii; Iliadis, Dimitrios; Ilic, Nikolina; Inamaru, Yuki; Ince, Tayfun; Ioannou, Pavlos; Iodice, Mauro; Iordanidou, Kalliopi; Ippolito, Valerio; Irles Quiles, Adrian; Isaksson, Charlie; Ishino, Masaya; Ishitsuka, Masaki; Ishmukhametov, Renat; Issever, Cigdem; Istin, Serhat; Iturbe Ponce, Julia Mariana; Iuppa, Roberto; Ivarsson, Jenny; Iwanski, Wieslaw; Iwasaki, Hiroyuki; Izen, Joseph; Izzo, Vincenzo; Jackson, Brett; Jackson, Matthew; Jackson, Paul; Jaekel, Martin; Jain, Vivek; Jakobs, Karl; Jakobsen, Sune; Jakoubek, Tomas; Jakubek, Jan; Jamin, David Olivier; Jana, Dilip; Jansen, Eric; Jansen, Hendrik; Janssen, Jens; Janus, Michel; Jarlskog, Göran; Javadov, Namig; Javůrek, Tomáš; Jeanty, Laura; Jejelava, Juansher; Jeng, Geng-yuan; Jennens, David; Jenni, Peter; Jentzsch, Jennifer; Jeske, Carl; Jézéquel, Stéphane; Ji, Haoshuang; Ji, Weina; Jia, Jiangyong; Jiang, Yi; Jimenez Belenguer, Marcos; Jin, Shan; Jinaru, Adam; Jinnouchi, Osamu; Joergensen, Morten Dam; Johansson, Erik; Johansson, Per; Johns, Kenneth; Jon-And, Kerstin; Jones, Graham; Jones, Roger; Jones, Tim; Jongmanns, Jan; Jorge, Pedro; Joshi, Kiran Daniel; Jovicevic, Jelena; Ju, Xiangyang; Jung, Christian; Jungst, Ralph Markus; Jussel, Patrick; Juste Rozas, Aurelio; Kaci, Mohammed; Kaczmarska, Anna; Kado, Marumi; Kagan, Harris; Kagan, Michael; Kajomovitz, Enrique; Kalderon, Charles William; Kama, Sami; Kamenshchikov, Andrey; Kanaya, Naoko; Kaneda, Michiru; Kaneti, Steven; Kantserov, Vadim; Kanzaki, Junichi; Kaplan, Benjamin; Kapliy, Anton; Kar, Deepak; Karakostas, Konstantinos; Karastathis, Nikolaos; Karnevskiy, Mikhail; Karpov, Sergey; Karpova, Zoya; Karthik, Krishnaiyengar; Kartvelishvili, Vakhtang; Karyukhin, Andrey; Kashif, Lashkar; Kasieczka, Gregor; Kass, Richard; Kastanas, Alex; Kataoka, Yousuke; Katre, Akshay; Katzy, Judith; Kaushik, Venkatesh; Kawagoe, Kiyotomo; Kawamoto, Tatsuo; Kawamura, Gen; Kazama, Shingo; Kazanin, Vassili; Kazarinov, Makhail; Keeler, Richard; Kehoe, Robert; Keil, Markus; Keller, John; Kempster, Jacob Julian; Keoshkerian, Houry; Kepka, Oldrich; Kerševan, Borut Paul; Kersten, Susanne; Kessoku, Kohei; Keung, Justin; Khalil-zada, Farkhad; Khandanyan, Hovhannes; Khanov, Alexander; Khodinov, Alexander; Khomich, Andrei; Khoo, Teng Jian; Khoriauli, Gia; Khoroshilov, Andrey; Khovanskiy, Valery; Khramov, Evgeniy; Khubua, Jemal; Kim, Hee Yeun; Kim, Hyeon Jin; Kim, Shinhong; Kimura, Naoki; Kind, Oliver; King, Barry; King, Matthew; King, Robert Steven Beaufoy; King, Samuel Burton; Kirk, Julie; Kiryunin, Andrey; Kishimoto, Tomoe; Kisielewska, Danuta; Kiss, Florian; Kittelmann, Thomas; Kiuchi, Kenji; Kladiva, Eduard; Klein, Max; Klein, Uta; Kleinknecht, Konrad; Klimek, Pawel; Klimentov, Alexei; Klingenberg, Reiner; Klinger, Joel Alexander; Klioutchnikova, Tatiana; Klok, Peter; Kluge, Eike-Erik; Kluit, Peter; Kluth, Stefan; Kneringer, Emmerich; Knoops, Edith; Knue, Andrea; Kobayashi, Dai; Kobayashi, Tomio; Kobel, Michael; Kocian, Martin; Kodys, Peter; Koevesarki, Peter; Koffas, Thomas; Koffeman, Els; Kogan, Lucy Anne; Kohlmann, Simon; Kohout, Zdenek; Kohriki, Takashi; Koi, Tatsumi; Kolanoski, Hermann; Koletsou, Iro; Koll, James; Komar, Aston; Komori, Yuto; Kondo, Takahiko; Kondrashova, Nataliia; Köneke, Karsten; König, Adriaan; König, Sebastian; Kono, Takanori; Konoplich, Rostislav; Konstantinidis, Nikolaos; Kopeliansky, Revital; Koperny, Stefan; Köpke, Lutz; Kopp, Anna Katharina; Korcyl, Krzysztof; Kordas, Kostantinos; Korn, Andreas; Korol, Aleksandr; Korolkov, Ilya; Korolkova, Elena; Korotkov, Vladislav; Kortner, Oliver; Kortner, Sandra; Kostyukhin, Vadim; Kotov, Vladislav; Kotwal, Ashutosh; Kourkoumelis, Christine; Kouskoura, Vasiliki; Koutsman, Alex; Kowalewski, Robert Victor; Kowalski, Tadeusz; Kozanecki, Witold; Kozhin, Anatoly; Kral, Vlastimil; Kramarenko, Viktor; Kramberger, Gregor; Krasnopevtsev, Dimitriy; Krasny, Mieczyslaw Witold; Krasznahorkay, Attila; Kraus, Jana; Kravchenko, Anton; Kreiss, Sven; Kretz, Moritz; Kretzschmar, Jan; Kreutzfeldt, Kristof; Krieger, Peter; Kroeninger, Kevin; Kroha, Hubert; Kroll, Joe; Kroseberg, Juergen; Krstic, Jelena; Kruchonak, Uladzimir; Krüger, Hans; Kruker, Tobias; Krumnack, Nils; Krumshteyn, Zinovii; Kruse, Amanda; Kruse, Mark; Kruskal, Michael; Kubota, Takashi; Kuday, Sinan; Kuehn, Susanne; Kugel, Andreas; Kuhl, Andrew; Kuhl, Thorsten; Kukhtin, Victor; Kulchitsky, Yuri; Kuleshov, Sergey; Kuna, Marine; Kunkle, Joshua; Kupco, Alexander; Kurashige, Hisaya; Kurochkin, Yurii; Kurumida, Rie; Kus, Vlastimil; Kuwertz, Emma Sian; Kuze, Masahiro; Kvita, Jiri; La Rosa, Alessandro; La Rotonda, Laura; Lacasta, Carlos; Lacava, Francesco; Lacey, James; Lacker, Heiko; Lacour, Didier; Lacuesta, Vicente Ramón; Ladygin, Evgueni; Lafaye, Remi; Laforge, Bertrand; Lagouri, Theodota; Lai, Stanley; Laier, Heiko; Lambourne, Luke; Lammers, Sabine; Lampen, Caleb; Lampl, Walter; Lançon, Eric; Landgraf, Ulrich; Landon, Murrough; Lang, Valerie Susanne; Lankford, Andrew; Lanni, Francesco; Lantzsch, Kerstin; Laplace, Sandrine; Lapoire, Cecile; Laporte, Jean-Francois; Lari, Tommaso; Lassnig, Mario; Laurelli, Paolo; Lavrijsen, Wim; Law, Alexander; Laycock, Paul; Le, Bao Tran; Le Dortz, Olivier; Le Guirriec, Emmanuel; Le Menedeu, Eve; LeCompte, Thomas; Ledroit-Guillon, Fabienne Agnes Marie; Lee, Claire Alexandra; Lee, Hurng-Chun; Lee, Jason; Lee, Shih-Chang; Lee, Lawrence; Lefebvre, Guillaume; Lefebvre, Michel; Legger, Federica; Leggett, Charles; Lehan, Allan; Lehmacher, Marc; Lehmann Miotto, Giovanna; Lei, Xiaowen; Leight, William Axel; Leisos, Antonios; Leister, Andrew Gerard; Leite, Marco Aurelio Lisboa; Leitner, Rupert; Lellouch, Daniel; Lemmer, Boris; Leney, Katharine; Lenz, Tatjana; Lenzen, Georg; Lenzi, Bruno; Leone, Robert; Leone, Sandra; Leonhardt, Kathrin; Leonidopoulos, Christos; Leontsinis, Stefanos; Leroy, Claude; Lester, Christopher; Lester, Christopher Michael; Levchenko, Mikhail; Levêque, Jessica; Levin, Daniel; Levinson, Lorne; Levy, Mark; Lewis, Adrian; Lewis, George; Leyko, Agnieszka; Leyton, Michael; Li, Bing; Li, Bo; Li, Haifeng; Li, Ho Ling; Li, Lei; Li, Liang; Li, Shu; Li, Yichen; Liang, Zhijun; Liao, Hongbo; Liberti, Barbara; Lichard, Peter; Lie, Ki; Liebal, Jessica; Liebig, Wolfgang; Limbach, Christian; Limosani, Antonio; Lin, Simon; Lin, Tai-Hua; Linde, Frank; Lindquist, Brian Edward; Linnemann, James; Lipeles, Elliot; Lipniacka, Anna; Lisovyi, Mykhailo; Liss, Tony; Lissauer, David; Lister, Alison; Litke, Alan; Liu, Bo; Liu, Dong; Liu, Jianbei; Liu, Kun; Liu, Lulu; Liu, Miaoyuan; Liu, Minghui; Liu, Yanwen; Livan, Michele; Livermore, Sarah; Lleres, Annick; Llorente Merino, Javier; Lloyd, Stephen; Lo Sterzo, Francesco; Lobodzinska, Ewelina; Loch, Peter; Lockman, William; Loddenkoetter, Thomas; Loebinger, Fred; Loevschall-Jensen, Ask Emil; Loginov, Andrey; Loh, Chang Wei; Lohse, Thomas; Lohwasser, Kristin; Lokajicek, Milos; Lombardo, Vincenzo Paolo; Long, Brian Alexander; Long, Jonathan; Long, Robin Eamonn; Lopes, Lourenco; Lopez Mateos, David; Lopez Paredes, Brais; Lopez Paz, Ivan; Lorenz, Jeanette; Lorenzo Martinez, Narei; Losada, Marta; Loscutoff, Peter; Lou, XinChou; Lounis, Abdenour; Love, Jeremy; Love, Peter; Lowe, Andrew; Lu, Feng; Lubatti, Henry; Luci, Claudio; Lucotte, Arnaud; Luehring, Frederick; Lukas, Wolfgang; Luminari, Lamberto; Lundberg, Olof; Lund-Jensen, Bengt; Lungwitz, Matthias; Lynn, David; Lysak, Roman; Lytken, Else; Ma, Hong; Ma, Lian Liang; Maccarrone, Giovanni; Macchiolo, Anna; Machado Miguens, Joana; Macina, Daniela; Madaffari, Daniele; Madar, Romain; Maddocks, Harvey Jonathan; Mader, Wolfgang; Madsen, Alexander; Maeno, Mayuko; Maeno, Tadashi; Magradze, Erekle; Mahboubi, Kambiz; Mahlstedt, Joern; Mahmoud, Sara; Maiani, Camilla; Maidantchik, Carmen; Maier, Andreas Alexander; Maio, Amélia; Majewski, Stephanie; Makida, Yasuhiro; Makovec, Nikola; Mal, Prolay; Malaescu, Bogdan; Malecki, Pawel; Maleev, Victor; Malek, Fairouz; Mallik, Usha; Malon, David; Malone, Caitlin; Maltezos, Stavros; Malyshev, Vladimir; Malyukov, Sergei; Mamuzic, Judita; Mandelli, Beatrice; Mandelli, Luciano; Mandić, Igor; Mandrysch, Rocco; Maneira, José; Manfredini, Alessandro; Manhaes de Andrade Filho, Luciano; Manjarres Ramos, Joany Andreina; Mann, Alexander; Manning, Peter; Manousakis-Katsikakis, Arkadios; Mansoulie, Bruno; Mantifel, Rodger; Mapelli, Livio; March, Luis; Marchand, Jean-Francois; Marchiori, Giovanni; Marcisovsky, Michal; Marino, Christopher; Marjanovic, Marija; Marques, Carlos; Marroquim, Fernando; Marsden, Stephen Philip; Marshall, Zach; Marti, Lukas Fritz; Marti-Garcia, Salvador; Martin, Brian; Martin, Brian Thomas; Martin, Tim; Martin, Victoria Jane; Martin dit Latour, Bertrand; Martinez, Homero; Martinez, Mario; Martin-Haugh, Stewart; Martyniuk, Alex; Marx, Marilyn; Marzano, Francesco; Marzin, Antoine; Masetti, Lucia; Mashimo, Tetsuro; Mashinistov, Ruslan; Masik, Jiri; Maslennikov, Alexey; Massa, Ignazio; Massol, Nicolas; Mastrandrea, Paolo; Mastroberardino, Anna; Masubuchi, Tatsuya; Mättig, Peter; Mattmann, Johannes; Maurer, Julien; Maxfield, Stephen; Maximov, Dmitriy; Mazini, Rachid; Mazzaferro, Luca; Mc Goldrick, Garrin; Mc Kee, Shawn Patrick; McCarn, Allison; McCarthy, Robert; McCarthy, Tom; McCubbin, Norman; McFarlane, Kenneth; Mcfayden, Josh; Mchedlidze, Gvantsa; McMahon, Steve; McPherson, Robert; Meade, Andrew; Mechnich, Joerg; Medinnis, Michael; Meehan, Samuel; Mehlhase, Sascha; Mehta, Andrew; Meier, Karlheinz; Meineck, Christian; Meirose, Bernhard; Melachrinos, Constantinos; Mellado Garcia, Bruce Rafael; Meloni, Federico; Mengarelli, Alberto; Menke, Sven; Meoni, Evelin; Mercurio, Kevin Michael; Mergelmeyer, Sebastian; Meric, Nicolas; Mermod, Philippe; Merola, Leonardo; Meroni, Chiara; Merritt, Frank; Merritt, Hayes; Messina, Andrea; Metcalfe, Jessica; Mete, Alaettin Serhan; Meyer, Carsten; Meyer, Christopher; Meyer, Jean-Pierre; Meyer, Jochen; Middleton, Robin; Migas, Sylwia; Mijović, Liza; Mikenberg, Giora; Mikestikova, Marcela; Mikuž, Marko; Milic, Adriana; Miller, David; Mills, Corrinne; Milov, Alexander; Milstead, David; Milstein, Dmitry; Minaenko, Andrey; Minashvili, Irakli; Mincer, Allen; Mindur, Bartosz; Mineev, Mikhail; Ming, Yao; Mir, Lluisa-Maria; Mirabelli, Giovanni; Mitani, Takashi; Mitrevski, Jovan; Mitsou, Vasiliki A; Mitsui, Shingo; Miucci, Antonio; Miyagawa, Paul; Mjörnmark, Jan-Ulf; Moa, Torbjoern; Mochizuki, Kazuya; Mohapatra, Soumya; Mohr, Wolfgang; Molander, Simon; Moles-Valls, Regina; Mönig, Klaus; Monini, Caterina; Monk, James; Monnier, Emmanuel; Montejo Berlingen, Javier; Monticelli, Fernando; Monzani, Simone; Moore, Roger; Moraes, Arthur; Morange, Nicolas; Moreno, Deywis; Moreno Llácer, María; Morettini, Paolo; Morgenstern, Marcus; Morii, Masahiro; Moritz, Sebastian; Morley, Anthony Keith; Mornacchi, Giuseppe; Morris, John; Morvaj, Ljiljana; Moser, Hans-Guenther; Mosidze, Maia; Moss, Josh; Motohashi, Kazuki; Mount, Richard; Mountricha, Eleni; Mouraviev, Sergei; Moyse, Edward; Muanza, Steve; Mudd, Richard; Mueller, Felix; Mueller, James; Mueller, Klemens; Mueller, Thibaut; Mueller, Timo; Muenstermann, Daniel; Munwes, Yonathan; Murillo Quijada, Javier Alberto; Murray, Bill; Musheghyan, Haykuhi; Musto, Elisa; Myagkov, Alexey; Myska, Miroslav; Nackenhorst, Olaf; Nadal, Jordi; Nagai, Koichi; Nagai, Ryo; Nagai, Yoshikazu; Nagano, Kunihiro; Nagarkar, Advait; Nagasaka, Yasushi; Nagel, Martin; Nairz, Armin Michael; Nakahama, Yu; Nakamura, Koji; Nakamura, Tomoaki; Nakano, Itsuo; Namasivayam, Harisankar; Nanava, Gizo; Narayan, Rohin; Nattermann, Till; Naumann, Thomas; Navarro, Gabriela; Nayyar, Ruchika; Neal, Homer; Nechaeva, Polina; Neep, Thomas James; Nef, Pascal Daniel; Negri, Andrea; Negri, Guido; Negrini, Matteo; Nektarijevic, Snezana; Nelson, Andrew; Nelson, Timothy Knight; Nemecek, Stanislav; Nemethy, Peter; Nepomuceno, Andre Asevedo; Nessi, Marzio; Neubauer, Mark; Neumann, Manuel; Neves, Ricardo; Nevski, Pavel; Newman, Paul; Nguyen, Duong Hai; Nickerson, Richard; Nicolaidou, Rosy; Nicquevert, Bertrand; Nielsen, Jason; Nikiforou, Nikiforos; Nikiforov, Andriy; Nikolaenko, Vladimir; Nikolic-Audit, Irena; Nikolics, Katalin; Nikolopoulos, Konstantinos; Nilsson, Paul; Ninomiya, Yoichi; Nisati, Aleandro; Nisius, Richard; Nobe, Takuya; Nodulman, Lawrence; Nomachi, Masaharu; Nomidis, Ioannis; Norberg, Scarlet; Nordberg, Markus; Novgorodova, Olga; Nowak, Sebastian; Nozaki, Mitsuaki; Nozka, Libor; Ntekas, Konstantinos; Nunes Hanninger, Guilherme; Nunnemann, Thomas; Nurse, Emily; Nuti, Francesco; O'Brien, Brendan Joseph; O'grady, Fionnbarr; O'Neil, Dugan; O'Shea, Val; Oakham, Gerald; Oberlack, Horst; Obermann, Theresa; Ocariz, Jose; Ochi, Atsuhiko; Ochoa, Ines; Oda, Susumu; Odaka, Shigeru; Ogren, Harold; Oh, Alexander; Oh, Seog; Ohm, Christian; Ohman, Henrik; Ohshima, Takayoshi; Okamura, Wataru; Okawa, Hideki; Okumura, Yasuyuki; Okuyama, Toyonobu; Olariu, Albert; Olchevski, Alexander; Olivares Pino, Sebastian Andres; Oliveira Damazio, Denis; Oliver Garcia, Elena; Olszewski, Andrzej; Olszowska, Jolanta; Onofre, António; Onyisi, Peter; Oram, Christopher; Oreglia, Mark; Oren, Yona; Orestano, Domizia; Orlando, Nicola; Oropeza Barrera, Cristina; Orr, Robert; Osculati, Bianca; Ospanov, Rustem; Otero y Garzon, Gustavo; Otono, Hidetoshi; Ouchrif, Mohamed; Ouellette, Eric; Ould-Saada, Farid; Ouraou, Ahmimed; Oussoren, Koen Pieter; Ouyang, Qun; Ovcharova, Ana; Owen, Mark; Ozcan, Veysi Erkcan; Ozturk, Nurcan; Pachal, Katherine; Pacheco Pages, Andres; Padilla Aranda, Cristobal; Pagáčová, Martina; Pagan Griso, Simone; Paganis, Efstathios; Pahl, Christoph; Paige, Frank; Pais, Preema; Pajchel, Katarina; Palacino, Gabriel; Palestini, Sandro; Palka, Marek; Pallin, Dominique; Palma, Alberto; Palmer, Jody; Pan, Yibin; Panagiotopoulou, Evgenia; Panduro Vazquez, William; Pani, Priscilla; Panikashvili, Natalia; Panitkin, Sergey; Pantea, Dan; Paolozzi, Lorenzo; Papadopoulou, Theodora; Papageorgiou, Konstantinos; Paramonov, Alexander; Paredes Hernandez, Daniela; Parker, Michael Andrew; Parodi, Fabrizio; Parsons, John; Parzefall, Ulrich; Pasqualucci, Enrico; Passaggio, Stefano; Passeri, Antonio; Pastore, Fernanda; Pastore, Francesca; Pásztor, Gabriella; Pataraia, Sophio; Patel, Nikhul; Pater, Joleen; Patricelli, Sergio; Pauly, Thilo; Pearce, James; Pedersen, Maiken; Pedraza Lopez, Sebastian; Pedro, Rute; Peleganchuk, Sergey; Pelikan, Daniel; Peng, Haiping; Penning, Bjoern; Penwell, John; Perepelitsa, Dennis; Perez Codina, Estel; Pérez García-Estañ, María Teresa; Perez Reale, Valeria; Perini, Laura; Pernegger, Heinz; Perrino, Roberto; Peschke, Richard; Peshekhonov, Vladimir; Peters, Krisztian; Peters, Yvonne; Petersen, Brian; Petersen, Troels; Petit, Elisabeth; Petridis, Andreas; Petridou, Chariclia; Petrolo, Emilio; Petrucci, Fabrizio; Pettersson, Nora Emilia; Pezoa, Raquel; Phillips, Peter William; Piacquadio, Giacinto; Pianori, Elisabetta; Picazio, Attilio; Piccaro, Elisa; Piccinini, Maurizio; Piegaia, Ricardo; Pignotti, David; Pilcher, James; Pilkington, Andrew; Pina, João Antonio; Pinamonti, Michele; Pinder, Alex; Pinfold, James; Pingel, Almut; Pinto, Belmiro; Pires, Sylvestre; Pitt, Michael; Pizio, Caterina; Plazak, Lukas; Pleier, Marc-Andre; Pleskot, Vojtech; Plotnikova, Elena; Plucinski, Pawel; Poddar, Sahill; Podlyski, Fabrice; Poettgen, Ruth; Poggioli, Luc; Pohl, David-leon; Pohl, Martin; Polesello, Giacomo; Policicchio, Antonio; Polifka, Richard; Polini, Alessandro; Pollard, Christopher Samuel; Polychronakos, Venetios; Pommès, Kathy; Pontecorvo, Ludovico; Pope, Bernard; Popeneciu, Gabriel Alexandru; Popovic, Dragan; Poppleton, Alan; Portell Bueso, Xavier; Pospisil, Stanislav; Potamianos, Karolos; Potrap, Igor; Potter, Christina; Potter, Christopher; Poulard, Gilbert; Poveda, Joaquin; Pozdnyakov, Valery; Pralavorio, Pascal; Pranko, Aliaksandr; Prasad, Srivas; Pravahan, Rishiraj; Prell, Soeren; Price, Darren; Price, Joe; Price, Lawrence; Prieur, Damien; Primavera, Margherita; Proissl, Manuel; Prokofiev, Kirill; Prokoshin, Fedor; Protopapadaki, Eftychia-sofia; Protopopescu, Serban; Proudfoot, James; Przybycien, Mariusz; Przysiezniak, Helenka; Ptacek, Elizabeth; Puddu, Daniele; Pueschel, Elisa; Puldon, David; Purohit, Milind; Puzo, Patrick; Qian, Jianming; Qin, Gang; Qin, Yang; Quadt, Arnulf; Quarrie, David; Quayle, William; Queitsch-Maitland, Michaela; Quilty, Donnchadha; Qureshi, Anum; Radeka, Veljko; Radescu, Voica; Radhakrishnan, Sooraj Krishnan; Radloff, Peter; Rados, Pere; Ragusa, Francesco; Rahal, Ghita; Rajagopalan, Srinivasan; Rammensee, Michael; Randle-Conde, Aidan Sean; Rangel-Smith, Camila; Rao, Kanury; Rauscher, Felix; Rave, Tobias Christian; Ravenscroft, Thomas; Raymond, Michel; Read, Alexander Lincoln; Readioff, Nathan Peter; Rebuzzi, Daniela; Redelbach, Andreas; Redlinger, George; Reece, Ryan; Reeves, Kendall; Rehnisch, Laura; Reisin, Hernan; Relich, Matthew; Rembser, Christoph; Ren, Huan; Ren, Zhongliang; Renaud, Adrien; Rescigno, Marco; Resconi, Silvia; Rezanova, Olga; Reznicek, Pavel; Rezvani, Reyhaneh; Richter, Robert; Ridel, Melissa; Rieck, Patrick; Rieger, Julia; Rijssenbeek, Michael; Rimoldi, Adele; Rinaldi, Lorenzo; Ritsch, Elmar; Riu, Imma; Rizatdinova, Flera; Rizvi, Eram; Robertson, Steven; Robichaud-Veronneau, Andree; Robinson, Dave; Robinson, James; Robson, Aidan; Roda, Chiara; Rodrigues, Luis; Roe, Shaun; Røhne, Ole; Rolli, Simona; Romaniouk, Anatoli; Romano, Marino; Romero Adam, Elena; Rompotis, Nikolaos; Roos, Lydia; Ros, Eduardo; Rosati, Stefano; Rosbach, Kilian; Rose, Matthew; Rosendahl, Peter Lundgaard; Rosenthal, Oliver; Rossetti, Valerio; Rossi, Elvira; Rossi, Leonardo Paolo; Rosten, Rachel; Rotaru, Marina; Roth, Itamar; Rothberg, Joseph; Rousseau, David; Royon, Christophe; Rozanov, Alexandre; Rozen, Yoram; Ruan, Xifeng; Rubbo, Francesco; Rubinskiy, Igor; Rud, Viacheslav; Rudolph, Christian; Rudolph, Matthew Scott; Rühr, Frederik; Ruiz-Martinez, Aranzazu; Rurikova, Zuzana; Rusakovich, Nikolai; Ruschke, Alexander; Rutherfoord, John; Ruthmann, Nils; Ryabov, Yury; Rybar, Martin; Rybkin, Grigori; Ryder, Nick; Saavedra, Aldo; Sacerdoti, Sabrina; Saddique, Asif; Sadeh, Iftach; Sadrozinski, Hartmut; Sadykov, Renat; Safai Tehrani, Francesco; Sakamoto, Hiroshi; Sakurai, Yuki; Salamanna, Giuseppe; Salamon, Andrea; Saleem, Muhammad; Salek, David; Sales De Bruin, Pedro Henrique; Salihagic, Denis; Salnikov, Andrei; Salt, José; Salvachua Ferrando, Belén; Salvatore, Daniela; Salvatore, Pasquale Fabrizio; Salvucci, Antonio; Salzburger, Andreas; Sampsonidis, Dimitrios; Sanchez, Arturo; Sánchez, Javier; Sanchez Martinez, Victoria; Sandaker, Heidi; Sandbach, Ruth Laura; Sander, Heinz Georg; Sanders, Michiel; Sandhoff, Marisa; Sandoval, Tanya; Sandoval, Carlos; Sandstroem, Rikard; Sankey, Dave; Sansoni, Andrea; Santoni, Claudio; Santonico, Rinaldo; Santos, Helena; Santoyo Castillo, Itzebelt; Sapp, Kevin; Sapronov, Andrey; Saraiva, João; Sarrazin, Bjorn; Sartisohn, Georg; Sasaki, Osamu; Sasaki, Yuichi; Sauvage, Gilles; Sauvan, Emmanuel; Savard, Pierre; Savu, Dan Octavian; Sawyer, Craig; Sawyer, Lee; Saxon, David; Saxon, James; Sbarra, Carla; Sbrizzi, Antonio; Scanlon, Tim; Scannicchio, Diana; Scarcella, Mark; Scarfone, Valerio; Schaarschmidt, Jana; Schacht, Peter; Schaefer, Douglas; Schaefer, Ralph; Schaepe, Steffen; Schaetzel, Sebastian; Schäfer, Uli; Schaffer, Arthur; Schaile, Dorothee; Schamberger, R. Dean; Scharf, Veit; Schegelsky, Valery; Scheirich, Daniel; Schernau, Michael; Scherzer, Max; Schiavi, Carlo; Schieck, Jochen; Schillo, Christian; Schioppa, Marco; Schlenker, Stefan; Schmidt, Evelyn; Schmieden, Kristof; Schmitt, Christian; Schmitt, Christopher; Schmitt, Sebastian; Schneider, Basil; Schnellbach, Yan Jie; Schnoor, Ulrike; Schoeffel, Laurent; Schoening, Andre; Schoenrock, Bradley Daniel; Schorlemmer, Andre Lukas; Schott, Matthias; Schouten, Doug; Schovancova, Jaroslava; Schramm, Steven; Schreyer, Manuel; Schroeder, Christian; Schuh, Natascha; Schultens, Martin Johannes; Schultz-Coulon, Hans-Christian; Schulz, Holger; Schumacher, Markus; Schumm, Bruce; Schune, Philippe; Schwanenberger, Christian; Schwartzman, Ariel; Schwegler, Philipp; Schwemling, Philippe; Schwienhorst, Reinhard; Schwindling, Jerome; Schwindt, Thomas; Schwoerer, Maud; Sciacca, Gianfranco; Scifo, Estelle; Sciolla, Gabriella; Scott, Bill; Scuri, Fabrizio; Scutti, Federico; Searcy, Jacob; Sedov, George; Sedykh, Evgeny; Seidel, Sally; Seiden, Abraham; Seifert, Frank; Seixas, José; Sekhniaidze, Givi; Sekula, Stephen; Selbach, Karoline Elfriede; Seliverstov, Dmitry; Sellers, Graham; Semprini-Cesari, Nicola; Serfon, Cedric; Serin, Laurent; Serkin, Leonid; Serre, Thomas; Seuster, Rolf; Severini, Horst; Sfiligoj, Tina; Sforza, Federico; Sfyrla, Anna; Shabalina, Elizaveta; Shamim, Mansoora; Shan, Lianyou; Shang, Ruo-yu; Shank, James; Shapiro, Marjorie; Shatalov, Pavel; Shaw, Kate; Shehu, Ciwake Yusufu; Sherwood, Peter; Shi, Liaoshan; Shimizu, Shima; Shimmin, Chase Owen; Shimojima, Makoto; Shiyakova, Mariya; Shmeleva, Alevtina; Shochet, Mel; Short, Daniel; Shrestha, Suyog; Shulga, Evgeny; Shupe, Michael; Shushkevich, Stanislav; Sicho, Petr; Sidiropoulou, Ourania; Sidorov, Dmitri; Sidoti, Antonio; Siegert, Frank; Sijacki, Djordje; Silva, José; Silver, Yiftah; Silverstein, Daniel; Silverstein, Samuel; Simak, Vladislav; Simard, Olivier; Simic, Ljiljana; Simion, Stefan; Simioni, Eduard; Simmons, Brinick; Simoniello, Rosa; Simonyan, Margar; Sinervo, Pekka; Sinev, Nikolai; Sipica, Valentin; Siragusa, Giovanni; Sircar, Anirvan; Sisakyan, Alexei; Sivoklokov, Serguei; Sjölin, Jörgen; Sjursen, Therese; Skottowe, Hugh Philip; Skovpen, Kirill; Skubic, Patrick; Slater, Mark; Slavicek, Tomas; Sliwa, Krzysztof; Smakhtin, Vladimir; Smart, Ben; Smestad, Lillian; Smirnov, Sergei; Smirnov, Yury; Smirnova, Lidia; Smirnova, Oxana; Smith, Kenway; Smizanska, Maria; Smolek, Karel; Snesarev, Andrei; Snidero, Giacomo; Snyder, Scott; Sobie, Randall; Socher, Felix; Soffer, Abner; Soh, Dart-yin; Solans, Carlos; Solar, Michael; Solc, Jaroslav; Soldatov, Evgeny; Soldevila, Urmila; Solfaroli Camillocci, Elena; Solodkov, Alexander; Soloshenko, Alexei; Solovyanov, Oleg; Solovyev, Victor; Sommer, Philip; Song, Hong Ye; Soni, Nitesh; Sood, Alexander; Sopczak, Andre; Sopko, Bruno; Sopko, Vit; Sorin, Veronica; Sosebee, Mark; Soualah, Rachik; Soueid, Paul; Soukharev, Andrey; South, David; Spagnolo, Stefania; Spanò, Francesco; Spearman, William Robert; Spettel, Fabian; Spighi, Roberto; Spigo, Giancarlo; Spousta, Martin; Spreitzer, Teresa; Spurlock, Barry; St Denis, Richard Dante; Staerz, Steffen; Stahlman, Jonathan; Stamen, Rainer; Stanecka, Ewa; Stanek, Robert; Stanescu, Cristian; Stanescu-Bellu, Madalina; Stanitzki, Marcel Michael; Stapnes, Steinar; Starchenko, Evgeny; Stark, Jan; Staroba, Pavel; Starovoitov, Pavel; Staszewski, Rafal; Stavina, Pavel; Steinberg, Peter; Stelzer, Bernd; Stelzer, Harald Joerg; Stelzer-Chilton, Oliver; Stenzel, Hasko; Stern, Sebastian; Stewart, Graeme; Stillings, Jan Andre; Stockton, Mark; Stoebe, Michael; Stoicea, Gabriel; Stolte, Philipp; Stonjek, Stefan; Stradling, Alden; Straessner, Arno; Stramaglia, Maria Elena; Strandberg, Jonas; Strandberg, Sara; Strandlie, Are; Strauss, Emanuel; Strauss, Michael; Strizenec, Pavol; Ströhmer, Raimund; Strom, David; Stroynowski, Ryszard; Stucci, Stefania Antonia; Stugu, Bjarne; Styles, Nicholas Adam; Su, Dong; Su, Jun; Subramania, Halasya Siva; Subramaniam, Rajivalochan; Succurro, Antonella; Sugaya, Yorihito; Suhr, Chad; Suk, Michal; Sulin, Vladimir; Sultansoy, Saleh; Sumida, Toshi; Sun, Xiaohu; Sundermann, Jan Erik; Suruliz, Kerim; Susinno, Giancarlo; Sutton, Mark; Suzuki, Yu; Svatos, Michal; Swedish, Stephen; Swiatlowski, Maximilian; Sykora, Ivan; Sykora, Tomas; Ta, Duc; Taccini, Cecilia; Tackmann, Kerstin; Taenzer, Joe; Taffard, Anyes; Tafirout, Reda; Taiblum, Nimrod; Takahashi, Yuta; Takai, Helio; Takashima, Ryuichi; Takeda, Hiroshi; Takeshita, Tohru; Takubo, Yosuke; Talby, Mossadek; Talyshev, Alexey; Tam, Jason; Tan, Kong Guan; Tanaka, Junichi; Tanaka, Reisaburo; Tanaka, Satoshi; Tanaka, Shuji; Tanasijczuk, Andres Jorge; Tannenwald, Benjamin Bordy; Tannoury, Nancy; Tapprogge, Stefan; Tarem, Shlomit; Tarrade, Fabien; Tartarelli, Giuseppe Francesco; Tas, Petr; Tasevsky, Marek; Tashiro, Takuya; Tassi, Enrico; Tavares Delgado, Ademar; Tayalati, Yahya; Taylor, Frank; Taylor, Geoffrey; Taylor, Wendy; Teischinger, Florian Alfred; Teixeira Dias Castanheira, Matilde; Teixeira-Dias, Pedro; Temming, Kim Katrin; Ten Kate, Herman; Teng, Ping-Kun; Teoh, Jia Jian; Terada, Susumu; Terashi, Koji; Terron, Juan; Terzo, Stefano; Testa, Marianna; Teuscher, Richard; Therhaag, Jan; Theveneaux-Pelzer, Timothée; Thomas, Juergen; Thomas-Wilsker, Joshuha; Thompson, Emily; Thompson, Paul; Thompson, Peter; Thompson, Stan; Thomsen, Lotte Ansgaard; Thomson, Evelyn; Thomson, Mark; Thong, Wai Meng; Thun, Rudolf; Tian, Feng; Tibbetts, Mark James; Tikhomirov, Vladimir; Tikhonov, Yury; Timoshenko, Sergey; Tiouchichine, Elodie; Tipton, Paul; Tisserant, Sylvain; Todorov, Theodore; Todorova-Nova, Sharka; Toggerson, Brokk; Tojo, Junji; Tokár, Stanislav; Tokushuku, Katsuo; Tollefson, Kirsten; Tomlinson, Lee; Tomoto, Makoto; Tompkins, Lauren; Toms, Konstantin; Topilin, Nikolai; Torrence, Eric; Torres, Heberth; Torró Pastor, Emma; Toth, Jozsef; Touchard, Francois; Tovey, Daniel; Tran, Huong Lan; Trefzger, Thomas; Tremblet, Louis; Tricoli, Alessandro; Trigger, Isabel Marian; Trincaz-Duvoid, Sophie; Tripiana, Martin; Triplett, Nathan; Trischuk, William; Trocmé, Benjamin; Troncon, Clara; Trottier-McDonald, Michel; Trovatelli, Monica; True, Patrick; Trzebinski, Maciej; Trzupek, Adam; Tsarouchas, Charilaos; Tseng, Jeffrey; Tsiareshka, Pavel; Tsionou, Dimitra; Tsipolitis, Georgios; Tsirintanis, Nikolaos; Tsiskaridze, Shota; Tsiskaridze, Vakhtang; Tskhadadze, Edisher; Tsukerman, Ilya; Tsulaia, Vakhtang; Tsuno, Soshi; Tsybychev, Dmitri; Tudorache, Alexandra; Tudorache, Valentina; Tuna, Alexander Naip; Tupputi, Salvatore; Turchikhin, Semen; Turecek, Daniel; Turk Cakir, Ilkay; Turra, Ruggero; Tuts, Michael; Tykhonov, Andrii; Tylmad, Maja; Tyndel, Mike; Uchida, Kirika; Ueda, Ikuo; Ueno, Ryuichi; Ughetto, Michael; Ugland, Maren; Uhlenbrock, Mathias; Ukegawa, Fumihiko; Unal, Guillaume; Undrus, Alexander; Unel, Gokhan; Ungaro, Francesca; Unno, Yoshinobu; Urbaniec, Dustin; Urquijo, Phillip; Usai, Giulio; Usanova, Anna; Vacavant, Laurent; Vacek, Vaclav; Vachon, Brigitte; Valencic, Nika; Valentinetti, Sara; Valero, Alberto; Valery, Loic; Valkar, Stefan; Valladolid Gallego, Eva; Vallecorsa, Sofia; Valls Ferrer, Juan Antonio; Van Den Wollenberg, Wouter; Van Der Deijl, Pieter; van der Geer, Rogier; van der Graaf, Harry; Van Der Leeuw, Robin; van der Ster, Daniel; van Eldik, Niels; van Gemmeren, Peter; Van Nieuwkoop, Jacobus; van Vulpen, Ivo; van Woerden, Marius Cornelis; Vanadia, Marco; Vandelli, Wainer; Vanguri, Rami; Vaniachine, Alexandre; Vankov, Peter; Vannucci, Francois; Vardanyan, Gagik; Vari, Riccardo; Varnes, Erich; Varol, Tulin; Varouchas, Dimitris; Vartapetian, Armen; Varvell, Kevin; Vazeille, Francois; Vazquez Schroeder, Tamara; Veatch, Jason; Veloso, Filipe; Veneziano, Stefano; Ventura, Andrea; Ventura, Daniel; Venturi, Manuela; Venturi, Nicola; Venturini, Alessio; Vercesi, Valerio; Verducci, Monica; Verkerke, Wouter; Vermeulen, Jos; Vest, Anja; Vetterli, Michel; Viazlo, Oleksandr; Vichou, Irene; Vickey, Trevor; Vickey Boeriu, Oana Elena; Viehhauser, Georg; Viel, Simon; Vigne, Ralph; Villa, Mauro; Villaplana Perez, Miguel; Vilucchi, Elisabetta; Vincter, Manuella; Vinogradov, Vladimir; Virzi, Joseph; Vivarelli, Iacopo; Vives Vaque, Francesc; Vlachos, Sotirios; Vladoiu, Dan; Vlasak, Michal; Vogel, Adrian; Vogel, Marcelo; Vokac, Petr; Volpi, Guido; Volpi, Matteo; von der Schmitt, Hans; von Radziewski, Holger; von Toerne, Eckhard; Vorobel, Vit; Vorobev, Konstantin; Vos, Marcel; Voss, Rudiger; Vossebeld, Joost; Vranjes, Nenad; Vranjes Milosavljevic, Marija; Vrba, Vaclav; Vreeswijk, Marcel; Vu Anh, Tuan; Vuillermet, Raphael; Vukotic, Ilija; Vykydal, Zdenek; Wagner, Peter; Wagner, Wolfgang; Wahlberg, Hernan; Wahrmund, Sebastian; Wakabayashi, Jun; Walder, James; Walker, Rodney; Walkowiak, Wolfgang; Wall, Richard; Waller, Peter; Walsh, Brian; Wang, Chao; Wang, Chiho; Wang, Fuquan; Wang, Haichen; Wang, Hulin; Wang, Jike; Wang, Jin; Wang, Kuhan; Wang, Rui; Wang, Song-Ming; Wang, Tan; Wang, Xiaoxiao; Wanotayaroj, Chaowaroj; Warburton, Andreas; Ward, Patricia; Wardrope, David Robert; Warsinsky, Markus; Washbrook, Andrew; Wasicki, Christoph; Watkins, Peter; Watson, Alan; Watson, Ian; Watson, Miriam; Watts, Gordon; Watts, Stephen; Waugh, Ben; Webb, Samuel; Weber, Michele; Weber, Stefan Wolf; Webster, Jordan S; Weidberg, Anthony; Weigell, Philipp; Weinert, Benjamin; Weingarten, Jens; Weiser, Christian; Weits, Hartger; Wells, Phillippa; Wenaus, Torre; Wendland, Dennis; Weng, Zhili; Wengler, Thorsten; Wenig, Siegfried; Wermes, Norbert; Werner, Matthias; Werner, Per; Wessels, Martin; Wetter, Jeffrey; Whalen, Kathleen; White, Andrew; White, Martin; White, Ryan; White, Sebastian; Whiteson, Daniel; Wicke, Daniel; Wickens, Fred; Wiedenmann, Werner; Wielers, Monika; Wienemann, Peter; Wiglesworth, Craig; Wiik-Fuchs, Liv Antje Mari; Wijeratne, Peter Alexander; Wildauer, Andreas; Wildt, Martin Andre; Wilkens, Henric George; Will, Jonas Zacharias; Williams, Hugh; Williams, Sarah; Willis, Christopher; Willocq, Stephane; Wilson, Alan; Wilson, John; Wingerter-Seez, Isabelle; Winklmeier, Frank; Winter, Benedict Tobias; Wittgen, Matthias; Wittig, Tobias; Wittkowski, Josephine; Wollstadt, Simon Jakob; Wolter, Marcin Wladyslaw; Wolters, Helmut; Wosiek, Barbara; Wotschack, Jorg; Woudstra, Martin; Wozniak, Krzysztof; Wright, Michael; Wu, Mengqing; Wu, Sau Lan; Wu, Xin; Wu, Yusheng; Wulf, Evan; Wyatt, Terry Richard; Wynne, Benjamin; Xella, Stefania; Xiao, Meng; Xu, Da; Xu, Lailin; Yabsley, Bruce; Yacoob, Sahal; Yamada, Miho; Yamaguchi, Hiroshi; Yamaguchi, Yohei; Yamamoto, Akira; Yamamoto, Kyoko; Yamamoto, Shimpei; Yamamura, Taiki; Yamanaka, Takashi; Yamauchi, Katsuya; Yamazaki, Yuji; Yan, Zhen; Yang, Haijun; Yang, Hongtao; Yang, Un-Ki; Yang, Yi; Yanush, Serguei; Yao, Liwen; Yao, Weiming; Yasu, Yoshiji; Yatsenko, Elena; Yau Wong, Kaven Henry; Ye, Jingbo; Ye, Shuwei; Yen, Andy L; Yildirim, Eda; Yilmaz, Metin; Yoosoofmiya, Reza; Yorita, Kohei; Yoshida, Rikutaro; Yoshihara, Keisuke; Young, Charles; Young, Christopher John; Youssef, Saul; Yu, David Ren-Hwa; Yu, Jaehoon; Yu, Jiaming; Yu, Jie; Yuan, Li; Yurkewicz, Adam; Yusuff, Imran; Zabinski, Bartlomiej; Zaidan, Remi; Zaitsev, Alexander; Zaman, Aungshuman; Zambito, Stefano; Zanello, Lucia; Zanzi, Daniele; Zeitnitz, Christian; Zeman, Martin; Zemla, Andrzej; Zengel, Keith; Zenin, Oleg; Ženiš, Tibor; Zerwas, Dirk; Zevi della Porta, Giovanni; Zhang, Dongliang; Zhang, Fangzhou; Zhang, Huaqiao; Zhang, Jinlong; Zhang, Lei; Zhang, Xueyao; Zhang, Zhiqing; Zhao, Zhengguo; Zhemchugov, Alexey; Zhong, Jiahang; Zhou, Bing; Zhou, Lei; Zhou, Ning; Zhu, Cheng Guang; Zhu, Hongbo; Zhu, Junjie; Zhu, Yingchun; Zhuang, Xuai; Zhukov, Konstantin; Zibell, Andre; Zieminska, Daria; Zimine, Nikolai; Zimmermann, Christoph; Zimmermann, Robert; Zimmermann, Simone; Zimmermann, Stephanie; Zinonos, Zinonas; Ziolkowski, Michael; Zobernig, Georg; Zoccoli, Antonio; zur Nedden, Martin; Zurzolo, Giovanni; Zutshi, Vishnu; Zwalinski, Lukasz
2014-09-15
A novel technique to identify and split clusters created by multiple charged particles in the ATLAS pixel detector using a set of artificial neural networks is presented. Such merged clusters are a common feature of tracks originating from highly energetic objects, such as jets. Neural networks are trained using Monte Carlo samples produced with a detailed detector simulation. This technique replaces the former clustering approach based on a connected component analysis and charge interpolation. The performance of the neural network splitting technique is quantified using data from proton-proton collisions at the LHC collected by the ATLAS detector in 2011 and from Monte Carlo simulations. This technique reduces the number of clusters shared between tracks in highly energetic jets by up to a factor of three. It also provides more precise position and error estimates of the clusters in both the transverse and longitudinal impact parameter resolution.
Inversion of residual gravity anomalies using tuned PSO
Roshan, Ravi; Singh, Upendra Kumar
2017-02-01
Many kinds of particle swarm optimization (PSO) techniques are now available and various efforts have been made to solve linear and non-linear problems as well as one-dimensional and multi-dimensional problems of geophysical data. Particle swarm optimization is a metaheuristic optimization method that requires intelligent guesswork and a suitable selection of controlling parameters (i.e. inertia weight and acceleration coefficient) for better convergence at global minima. The proposed technique, tuned PSO, is an improved technique of PSO, in which efforts have been made to choose the controlling parameters, and these parameters have been selected after analysing the responses of various possible exercises using synthetic gravity anomalies over various geological sources. The applicability and efficacy of the proposed method is tested and validated using synthetic gravity anomalies over various source geometries. Finally, tuned PSO is applied over field residual gravity anomalies of two different geological terrains to find the model parameters, namely amplitude coefficient factor (A), shape factor (q) and depth (z). The analysed results have been compared with published results obtained by different methods that show a significantly excellent agreement with real model parameters. The results also show that the proposed approach is not only superior to the other methods but also that the strategy has enhanced the exploration capability of the proposed method. Thus tuned PSO is an efficient and more robust technique to achieve an optimal solution with minimal error.
PSO con operador de clearing adaptativo para fomentar la diversidad
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Eduardo Samaniego
2016-12-01
Full Text Available En el presente trabajo se aplica una variante adaptativa del operador de Clearing para fomentar la diversidad de la Meta-heurística Optimización basada en Enjambre de Partículas (PSO. El objetivo consiste en determinar si la utilización de dicho operador mejora los niveles de exploración del algoritmo PSO incrementando la diversidad de la población y por consiguiente obteniendo mejores soluciones. Para ello, se propone una forma adaptativa para controlar la distancia permitida entre soluciones y de esta forma perturbar soluciones que se encuentren muy cercanas a otra con mejor calidad. Esta idea permite estudiar diferentes alternativas de como perturbar las soluciones seleccionadas, presentando en el trabajo dos enfoques diferentes: basado en la posición actual y en la mejor posición histórica. Además, se detalla un estudio para determinar cuando se aplicará el operador de Clearing para obtener la máxima contribución al proceso de búsqueda aplicado por PSO. La propuesta fue probada en un conjunto de 20 funciones multimodales, donde los resultados mostraron que el operador de clearing mejora la exploración de la Meta-heurística PSO, obteniéndose resultados significativamente superiores en cuanto a calidad que el modelo PSO original.
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Feng Zou
2016-01-01
Full Text Available An improved teaching-learning-based optimization with combining of the social character of PSO (TLBO-PSO, which is considering the teacher’s behavior influence on the students and the mean grade of the class, is proposed in the paper to find the global solutions of function optimization problems. In this method, the teacher phase of TLBO is modified; the new position of the individual is determined by the old position, the mean position, and the best position of current generation. The method overcomes disadvantage that the evolution of the original TLBO might stop when the mean position of students equals the position of the teacher. To decrease the computation cost of the algorithm, the process of removing the duplicate individual in original TLBO is not adopted in the improved algorithm. Moreover, the probability of local convergence of the improved method is decreased by the mutation operator. The effectiveness of the proposed method is tested on some benchmark functions, and the results are competitive with respect to some other methods.
Zou, Feng; Chen, Debao; Wang, Jiangtao
2016-01-01
An improved teaching-learning-based optimization with combining of the social character of PSO (TLBO-PSO), which is considering the teacher's behavior influence on the students and the mean grade of the class, is proposed in the paper to find the global solutions of function optimization problems. In this method, the teacher phase of TLBO is modified; the new position of the individual is determined by the old position, the mean position, and the best position of current generation. The method overcomes disadvantage that the evolution of the original TLBO might stop when the mean position of students equals the position of the teacher. To decrease the computation cost of the algorithm, the process of removing the duplicate individual in original TLBO is not adopted in the improved algorithm. Moreover, the probability of local convergence of the improved method is decreased by the mutation operator. The effectiveness of the proposed method is tested on some benchmark functions, and the results are competitive with respect to some other methods.
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Mingshan Xie
2017-01-01
Full Text Available In order to enhance the enthusiasm of the data provider in the process of data interaction and improve the adequacy of data interaction, we put forward the concept of the ego of data and then analyzed the characteristics of the ego of data in the Internet of Things (IOT in this paper. We implement two steps of data clustering for the Internet of things; the first step is the spatial location of adjacent fuzzy clustering, and the second step is the sampling time fuzzy clustering. Equivalent classes can be obtained through the two steps. In this way we can make the data with layout characteristics to be classified into different equivalent classes, so that the specific location information of the data can be obscured, the layout characteristics of tags are eliminated, and ultimately anonymization protection would be achieved. The experimental results show that the proposed algorithm can greatly improve the efficiency of protection of the data in the interaction with others in the incompletely open manner, without reducing the quality of anonymization and enhancing the information loss. The anonymization data set generated by this method has better data availability, and this algorithm can effectively improve the security of data exchange.
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Gao Qingji
2014-04-01
Full Text Available Airport passengers are required to put only one baggage each time in the check-in self-service so that the baggage can be detected and identified successfully. In order to automatically get the number of baggage that had been put on the conveyor belt, dual laser rangefinders are used to scan the outer contour of luggage in this paper. The algorithm based on hierarchical clustering and cube-fitting is proposed to inspect the number and dimension of airline luggage. Firstly, the point cloud is projected to vertical direction. By the analysis of one-dimensional clustering, the number and height of luggage will be quickly computed. Secondly, the method of nearest hierarchical clustering is applied to divide the point cloud if the above cannot be distinguished. It can preferably solve the difficult issue like crossing or overlapping pieces of baggage. Finally, the point cloud is projected to the horizontal plane. By rotating point cloud based on the centre, its minimum bounding rectangle (MBR is obtained. The length and width of luggage are got form MBR. Many experiments in different cases have been done to verify the effectiveness of the algorithm.
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B. Ojeda-Magaña
2013-01-01
Full Text Available We take the concept of typicality from the field of cognitive psychology, and we apply the meaning to the interpretation of numerical data sets and color images through fuzzy clustering algorithms, particularly the GKPFCM, looking to get better information from the processed data. The Gustafson Kessel Possibilistic Fuzzy c-means (GKPFCM is a hybrid algorithm that is based on a relative typicality (membership degree, Fuzzy c-means and an absolute typicality (typicality value, Possibilistic c-means. Thus, using both typicalities makes it possible to learn and analyze data as well as to relate the results with the theory of prototypes. In order to demonstrate these results we use a synthetic data set and a digitized image of a glass, in a first example, and images from the Berkley database, in a second example. The results clearly demonstrate the advantages of the information obtained about numerical data sets, taking into account the different meaning of typicalities and the availability of both values with the clustering algorithm used. This approach allows the identification of small homogeneous regions, which are difficult to find.
Indian Academy of Sciences (India)
, i is referred to as the loop-index, 'stat-body' is any sequence of ... while i ~ N do stat-body; i: = i+ 1; endwhile. The algorithm for sorting the numbers is described in Table 1 and the algorithmic steps on a list of 4 numbers shown in. Figure 1.
PSO-based methods for medical image registration and change assessment of pigmented skin
Kacenjar, Steve; Zook, Matthew; Balint, Michael
2011-03-01
's back topography. Since the skin is a deformable membrane, this process only provides an initial condition for subsequent refinements in aligning the localized topography of the skin. To achieve a refined enhancement, a Particle Swarm Optimizer (PSO) is used to optimally determine the local camera models associated with a generalized geometric transform. Here the optimization process is driven using the minimization of entropy between the multiple time-separated images. Once the camera models are corrected for local skin deformations, the images are compared using both pixel-based and regional-based methods. Limits on the detectability of change are established by the fidelity to which the algorithm corrects for local skin deformation and background alterations. These limits provide essential information in establishing early-warning thresholds for Melanoma detection. Key to this work is the development of a PSO alignment algorithm to perform the refined alignment in local skin topography between the time sequenced imagery (TSI). Test and validation of this alignment process is achieved using a forward model producing known geometric artifacts in the images and afterwards using a PSO algorithm to demonstrate the ability to identify and correct for these artifacts. Specifically, the forward model introduces local translational, rotational, and magnification changes within the image. These geometric modifiers are expected during TSI acquisition because of logistical issues to precisely align the patient to the image recording geometry and is therefore of paramount importance to any viable image registration system. This paper shows that the PSO alignment algorithm is effective in autonomously determining and mitigating these geometric modifiers. The degree of efficacy is measured by several statistically and morphologically based pre-image filtering operations applied to the TSI imagery before applying the PSO alignment algorithm. These trade studies show that global
PSO-SVM-Based Online Locomotion Mode Identification for Rehabilitation Robotic Exoskeletons
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Yi Long
2016-09-01
Full Text Available Locomotion mode identification is essential for the control of a robotic rehabilitation exoskeletons. This paper proposes an online support vector machine (SVM optimized by particle swarm optimization (PSO to identify different locomotion modes to realize a smooth and automatic locomotion transition. A PSO algorithm is used to obtain the optimal parameters of SVM for a better overall performance. Signals measured by the foot pressure sensors integrated in the insoles of wearable shoes and the MEMS-based attitude and heading reference systems (AHRS attached on the shoes and shanks of leg segments are fused together as the input information of SVM. Based on the chosen window whose size is 200 ms (with sampling frequency of 40 Hz, a three-layer wavelet packet analysis (WPA is used for feature extraction, after which, the kernel principal component analysis (kPCA is utilized to reduce the dimension of the feature set to reduce computation cost of the SVM. Since the signals are from two types of different sensors, the normalization is conducted to scale the input into the interval of [0, 1]. Five-fold cross validation is adapted to train the classifier, which prevents the classifier over-fitting. Based on the SVM model obtained offline in MATLAB, an online SVM algorithm is constructed for locomotion mode identification. Experiments are performed for different locomotion modes and experimental results show the effectiveness of the proposed algorithm with an accuracy of 96.00% ± 2.45%. To improve its accuracy, majority vote algorithm (MVA is used for post-processing, with which the identification accuracy is better than 98.35% ± 1.65%. The proposed algorithm can be extended and employed in the field of robotic rehabilitation and assistance.
Aslan, Mikail; Davis, Jack B A; Johnston, Roy L
2016-03-07
The global optimisation of small bimetallic PdCo binary nanoalloys are systematically investigated using the Birmingham Cluster Genetic Algorithm (BCGA). The effect of size and composition on the structures, stability, magnetic and electronic properties including the binding energies, second finite difference energies and mixing energies of Pd-Co binary nanoalloys are discussed. A detailed analysis of Pd-Co structural motifs and segregation effects is also presented. The maximal mixing energy corresponds to Pd atom compositions for which the number of mixed Pd-Co bonds is maximised. Global minimum clusters are distinguished from transition states by vibrational frequency analysis. HOMO-LUMO gap, electric dipole moment and vibrational frequency analyses are made to enable correlation with future experiments.
Tsai, Ming-Hui; Huang, Yueh-Min
2014-11-18
Wireless sensor networks (WSNs) have emerged as a promising solution for various applications due to their low cost and easy deployment. Typically, their limited power capability, i.e., battery powered, make WSNs encounter the challenge of extension of network lifetime. Many hierarchical protocols show better ability of energy efficiency in the literature. Besides, data reduction based on the correlation of sensed readings can efficiently reduce the amount of required transmissions. Therefore, we use a sub-clustering procedure based on spatial data correlation to further separate the hierarchical (clustered) architecture of a WSN. The proposed algorithm (2TC-cor) is composed of two procedures: the prediction model construction procedure and the sub-clustering procedure. The energy conservation benefits by the reduced transmissions, which are dependent on the prediction model. Also, the energy can be further conserved because of the representative mechanism of sub-clustering. As presented by simulation results, it shows that 2TC-cor can effectively conserve energy and monitor accurately the environment within an acceptable level.
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SHOJAEIAN, S.
2014-02-01
Full Text Available The presence of reactive component of current in transmission lines causes adverse impact on the network, including power losses, reduction of line capacity, and voltage drop. These adverse impacts can be reduced by using the first or second generation of FACTS devices. In this paper, these adverse impacts can be reduced optimally by using one of the modern optimization techniques, i.e., particle swarm optimization algorithm (PSO algorithm. By using this algorithm, the optimal size of the static VAr compensator (FACTS devices in a 30 bus IEEE test system is determined. At first, the load flow equations of the 30 bus IEEE test system is defined in the MATLAB software by means of dynamic programming method, and the number of SVCs will be determined by using the system sensitivity function (power losses and the sum of buses voltage drop square; then, the optimal sizes of the FACTS devices is obtained by means of PSO algorithm.
KAJIAN MANAJEMEN PRODUKSI PEMBERITAAN PSO BIDANG PERS OLEH LKBN ANTARA
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Primayanti Primayanti
2015-05-01
Full Text Available Based on Government Regulation No. 40 Year 2007 on Perum ANTARA do fund public services (public service obligation / PSO in the field of government information. ANTARA position is also very strategic in the middle of the fight-laden media industry interests. Also, the need to get in the news media with the retail product line strategy while maintaining the main products for the media.Results of this study showed that the press area of public service obligations (PSO-Field Press includes a number of products and services that news text, photo news, and TV news. In line with government policies and programs, also set a number of themes that frame the products and services fields PSO Press.PSO and Field Releases can be interpreted as the government's efforts to maintain control and domination of the media life, given the strategic function of political economy of media. A contradiction was born. On the one hand, the government wants to adopt the principles of the liberal press, on the other hand maintain government policies in the media sector as opposed to the spirit of libertarianism. Berdasarkan Peraturan Pemerintah Nomor 40 Tahun 2007 tentang Perum LKBN ANTARA dilakukan dana pelayanan umum (public service obligation/PSO di bidang informasi dari pemerintah. Posisi LKBN ANTARA juga sangat strategis di tengah pertarungan industri media yang sarat kepentingan. Juga, perlunya kantor berita masuk media ritel dengan strategi lini produk dengan tetap mempertahankan produk utama untuk media.Hasil penelitian ini menujukkan bahwa kewajiban pelayanan umum bidang pers (PSO-Bidang Pers tersebut mencakup sejumlah produk dan layanan yaitu berita teks, berita foto, dan berita TV. Agar sejalan dengan program dan kebijakan pemerintah, ditetapkan pula sejumlah tema yang membingkai produk dan layanan PSO Bidang Pers.PSO Bidang Pers dapat dimaknai sebagai upaya pemerintah yang ingin mempertahankan kontrol dan dominasinya terhadap kehidupan media, mengingat begitu
Optimizing the Forward Algorithm for Hidden Markov Model on IBM Roadrunner clusters
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SOIMAN, S.-I.
2015-05-01
Full Text Available In this paper we present a parallel solution of the Forward Algorithm for Hidden Markov Models. The Forward algorithm compute a probability of a hidden state from Markov model at a certain time, this process being recursively. The whole process requires large computational resources for those models with a large number of states and long observation sequences. Our solution in order to reduce the computational time is a multilevel parallelization of Forward algorithm. Two types of cores were used in our implementation, for each level of parallelization, cores that are graved on the same chip of PowerXCell8i processor. This hybrid architecture of processors permitted us to obtain a speedup factor over 40 relative to the sequential algorithm for a model with 24 states and 25 millions of observable symbols. Experimental results showed that the parallel Forward algorithm can evaluate the probability of an observation sequence on a hidden Markov model 40 times faster than the classic one does. Based on the performance obtained, we demonstrate the applicability of this parallel implementation of Forward algorithm in complex problems such as large vocabulary speech recognition.
Optimal PID Controller Design Based on PSO-RBFNN for Wind Turbine Systems
Directory of Open Access Journals (Sweden)
Jau-Woei Perng
2014-01-01
Full Text Available A strategy was proposed to determine the optimal operating point for the proportional-integral-derivative (PID controller of a wind turbine, and identify the stability regions in the parameter space. The proposed approach combined particle swarm optimization (PSO and radial basis function neural network (RBFNN algorithms. These intelligent algorithms are artificial learning mechanisms that can determine the optimal operating points, and were used to generate the function representing the most favorable operating parameters from each parameter of for the stability region of the PID controller. A graphical method was used to determine the 2D or 3D vision boundaries of the PID-type controller space in closed-loop wind turbine systems. The proposed techniques were demonstrated using simulations of a drive train model without time delay and a pitch control model with time delay. Finally, the 3D stability boundaries were determined the proposed graphical approach with and without time delay systems.
DEFF Research Database (Denmark)
Amini, M. Hadi; Broojeni, Kianoosh G.; Dragicevic, Tomislav
2017-01-01
of microgrid while preventing congestion as well as minimizing the power loss. Then, we present a two-layer simulation platform which considers both communication layer and physical layer of the microgrids' cluster. In order to improve the security of communication network, we perform the computations...... regarding the oblivious power routing via a cloud-based network. The proposed framework can be used for further studies that deal with the real-time simulation of the clusters of microgrids. In order to validate the effectiveness of the proposed framework, we implement our proposed oblivious routing scheme...
A Comprehensive Survey on Particle Swarm Optimization Algorithm and Its Applications
Directory of Open Access Journals (Sweden)
Yudong Zhang
2015-01-01
Full Text Available Particle swarm optimization (PSO is a heuristic global optimization method, proposed originally by Kennedy and Eberhart in 1995. It is now one of the most commonly used optimization techniques. This survey presented a comprehensive investigation of PSO. On one hand, we provided advances with PSO, including its modifications (including quantum-behaved PSO, bare-bones PSO, chaotic PSO, and fuzzy PSO, population topology (as fully connected, von Neumann, ring, star, random, etc., hybridization (with genetic algorithm, simulated annealing, Tabu search, artificial immune system, ant colony algorithm, artificial bee colony, differential evolution, harmonic search, and biogeography-based optimization, extensions (to multiobjective, constrained, discrete, and binary optimization, theoretical analysis (parameter selection and tuning, and convergence analysis, and parallel implementation (in multicore, multiprocessor, GPU, and cloud computing forms. On the other hand, we offered a survey on applications of PSO to the following eight fields: electrical and electronic engineering, automation control systems, communication theory, operations research, mechanical engineering, fuel and energy, medicine, chemistry, and biology. It is hoped that this survey would be beneficial for the researchers studying PSO algorithms.
Clustering algorithm in initialization of multi-hop wireless sensor networks
Guo, Peng; Tao, Jiang; Zhang, Kui; Chen, Hsiao-Hwa
2009-01-01
In most application scenarios of wireless sensor networks (WSN), sensor nodes are usually deployed randomly and do not have any knowledge about the network environment or even their ID's at the initial stage of their operations. In this paper, we address the clustering problems with a newly deployed
Research on logistics scheduling based on PSO
Bao, Huifang; Zhou, Linli; Liu, Lei
2017-08-01
With the rapid development of e-commerce based on the network, the logistics distribution support of e-commerce is becoming more and more obvious. The optimization of vehicle distribution routing can improve the economic benefit and realize the scientific of logistics [1]. Therefore, the study of logistics distribution vehicle routing optimization problem is not only of great theoretical significance, but also of considerable value of value. Particle swarm optimization algorithm is a kind of evolutionary algorithm, which is based on the random solution and the optimal solution by iteration, and the quality of the solution is evaluated through fitness. In order to obtain a more ideal logistics scheduling scheme, this paper proposes a logistics model based on particle swarm optimization algorithm.
Best, Andrew; Kapalo, Katelynn A.; Warta, Samantha F.; Fiore, Stephen M.
2016-05-01
Human-robot teaming largely relies on the ability of machines to respond and relate to human social signals. Prior work in Social Signal Processing has drawn a distinction between social cues (discrete, observable features) and social signals (underlying meaning). For machines to attribute meaning to behavior, they must first understand some probabilistic relationship between the cues presented and the signal conveyed. Using data derived from a study in which participants identified a set of salient social signals in a simulated scenario and indicated the cues related to the perceived signals, we detail a learning algorithm, which clusters social cue observations and defines an "N-Most Likely States" set for each cluster. Since multiple signals may be co-present in a given simulation and a set of social cues often maps to multiple social signals, the "N-Most Likely States" approach provides a dramatic improvement over typical linear classifiers. We find that the target social signal appears in a "3 most-likely signals" set with up to 85% probability. This results in increased speed and accuracy on large amounts of data, which is critical for modeling social cognition mechanisms in robots to facilitate more natural human-robot interaction. These results also demonstrate the utility of such an approach in deployed scenarios where robots need to communicate with human teammates quickly and efficiently. In this paper, we detail our algorithm, comparative results, and offer potential applications for robot social signal detection and machine-aided human social signal detection.
Directory of Open Access Journals (Sweden)
E.A. Zanaty
2012-03-01
Full Text Available In this paper, we determine the suitable validity criterion of kernelized fuzzy C-means and kernelized fuzzy C-means with spatial constraints for automatic segmentation of magnetic resonance imaging (MRI. For that; the original Euclidean distance in the FCM is replaced by a Gaussian radial basis function classifier (GRBF and the corresponding algorithms of FCM methods are derived. The derived algorithms are called as the kernelized fuzzy C-means (KFCM and kernelized fuzzy C-means with spatial constraints (SKFCM. These methods are implemented on eighteen indexes as validation to determine whether indexes are capable to acquire the optimal clusters number. The performance of segmentation is estimated by applying these methods independently on several datasets to prove which method can give good results and with which indexes. Our test spans various indexes covering the classical and the rather more recent indexes that have enjoyed noticeable success in that field. These indexes are evaluated and compared by applying them on various test images, including synthetic images corrupted with noise of varying levels, and simulated volumetric MRI datasets. Comparative analysis is also presented to show whether the validity index indicates the optimal clustering for our datasets.
The Optimal Operation of Multi-reservoir Floodwater Resources Control Based on GA-PSO
Huang, X.; Zhu, X.; Lian, Y.; Fang, G.; Zhu, L.
2015-12-01
Floodwater resources control operation has an important role to reduce flood disaster, ease the contradiction between water supply and demand and improve flood resource utilization. Based on the basin safety and floodwater resources utilization with the maximum benefit for floodwater optimal scheduling, the optimal operation of multi-reservoir floodwater resources control model is established. There are two objectives of floodwater resources control operation in multi-reservoir system. The first one is floodwater control safety, the other one is floodwater resource utilization with the maximum benefit. For the floodwater control safety target, the maximal flood peak reduction criterion is selected as the objective function. The maximal flood peak reduction criterion means that choosing reducing most peak flow as the judgment standard of the flood control operations optimal solution. For the floodwater resource utilization, maximum benefit of floodwater utilization refers to make full use of multi-reservoir capacity, accumulate transit flood as much as possible. In the other word, it refers to take releasing water as least as possible as the target in the case of determining the flood process. The model is solved by the coupling optimal method of genetic algorithm and particle swarm optimization (GA-PSO). GA-PSO uses the mutation for reference and takes PSO as a template, introduces the crossover and mutation into the search process of PSO in order to improve the search capabilities of particles. In order to make the particles have the characteristics of the current global best solution, crossover and mutation are used in the updated particles. Taking Shilianghe reservoir and Anfengshan reservoir in Jiangsu Province, China, for an case study, the results show that the optimal operation will reduce the floodwater resources control pressure, as well as keep nearly 81.11 million cubic meters floodwater resources accumulating in Longlianghe river and Anfengshan
Adaptive switching gravitational search algorithm: an attempt to ...
Indian Academy of Sciences (India)
Nor Azlina Ab Aziz
). The statistical analysis results show that ASw-GSA performs significantly better than GA and BA and as well as PSO, the original GSA and GWO.12. Keywords. Asynchronous; diversity; gravitational search algorithm; iteration strategy; ...
Directory of Open Access Journals (Sweden)
Ángel Cobo
2011-12-01
Full Text Available This paper presents a document representation strategy and a bio-inspired algorithm to cluster multilingual collections of documents in the field of economics and business. The proposed approach allows the user to identify groups of related economics documents written in Spanish and English using techniques inspired on clustering and sorting behaviours observed in some types of ants. In order to obtain a language independent vector representation of each document two multilingual resources are used: an economic glossary and a thesaurus. Each document is represented using four feature vectors: words, proper names, economic terms in the glossary and thesaurus descriptors. The proper name identification, word extraction and lemmatization are performed using specific tools. The tf-idf scheme is used to measure the importance of each feature in the document, and a convex linear combination of angular separations between feature vectors is used as similarity measure of documents. The paper shows experimental results of the application of the proposed algorithm in a Spanish-English corpus of research papers in economics and management areas. The results demonstrate the usefulness and effectiveness of the ant clustering algorithm and the proposed representation scheme.Este artículo presenta una estrategia de representación documental y un algoritmo bioinspirado para realizar procesos de agrupamiento en colecciones multilingües de documentos en las áreas de la economía y la empresa. El enfoque propuesto permite al usuario identificar grupos de documentos económicos relacionados escritos en español o inglés usando técnicas inspiradas en comportamientos de organización y agrupamiento de objetos observados en algunos tipos de hormigas. Para conseguir una representación vectorial de cada documento independiente del idioma, se han utilizado dos recursos lingüísticos: un glosario económico y un tesauro. Cada documento es representado usando
Particle swarm optimization - Genetic algorithm (PSOGA) on linear transportation problem
Rahmalia, Dinita
2017-08-01
Linear Transportation Problem (LTP) is the case of constrained optimization where we want to minimize cost subject to the balance of the number of supply and the number of demand. The exact method such as northwest corner, vogel, russel, minimal cost have been applied at approaching optimal solution. In this paper, we use heurisitic like Particle Swarm Optimization (PSO) for solving linear transportation problem at any size of decision variable. In addition, we combine mutation operator of Genetic Algorithm (GA) at PSO to improve optimal solution. This method is called Particle Swarm Optimization - Genetic Algorithm (PSOGA). The simulations show that PSOGA can improve optimal solution resulted by PSO.
Extension of K-Means Algorithm for clustering mixed data | Onuodu ...
African Journals Online (AJOL)
The dissimilarity model developed could serve as a predictive tool for identifying attributes of objects in mixed datasets. It has been implemented using JAVA programming language and MATLAB. Experiments on real-world datasets show that the new hybrid algorithm is more efficient and more robust when compared with ...
Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
DEFF Research Database (Denmark)
Frøslev, Tobias Guldberg; Kjøller, Rasmus; Bruun, Hans Henrik
2017-01-01
soil from 130 sites in Denmark spanning major environmental gradients. OTU tables are produced with several different OTU definition algorithms and subsequently curated with LULU, and validated against field survey data. LULU curation consistently improves α-diversity estimates and other biodiversity...
Optimal LQR controller in CSC based STATCOM using GA and PSO
Directory of Open Access Journals (Sweden)
Gupta Sandeep
2014-09-01
Full Text Available The static synchronous compensator (STATCOM is the multipurpose FACTS device with the multiple input and multiple output system for the enhancement of its dynamic performance in power system. Based on artificial intelligence (AI optimization technique, a novel controller is proposed for CSC based STATCOM. In this paper, the CSC based STATCOM is controlled by the LQR. But the best constant values for LQR controller's parameters are obtained laboriously through trial and error method, although time consuming. So the goal of this paper is to investigate the ability of AI techniques such as genetic algorithm (GA and particle swarm optimization (PSO methods to search the best values of LQR controller's parameters in a very short time with the desired criterion for the test system. Performances of the GA, PSO & ABC based LQR controllers are also compared. Applicability of the proposed scheme is demonstrated through simulation in MATLAB and the simulation results are shown an improvement in the input-output response of CSC-STATCOM
Indian Academy of Sciences (India)
electron transfer chains involved in a number of biologi- cal systems including respiration and photosynthesis.1. The most common iron–sulphur clusters found as active centres in iron–sulphur proteins are [Fe2S2], [Fe3S4] and [Fe4S4], in which Fe(III) ions are coordinated to cysteines from the peptide and are linked to each ...
Indian Academy of Sciences (India)
Algorithms. 3. Procedures and Recursion. R K Shyamasundar. In this article we introduce procedural abstraction and illustrate its uses. Further, we illustrate the notion of recursion which is one of the most useful features of procedural abstraction. Procedures. Let us consider a variation of the pro blem of summing the first M.
Indian Academy of Sciences (India)
number of elements. We shall illustrate the widely used matrix multiplication algorithm using the two dimensional arrays in the following. Consider two matrices A and B of integer type with di- mensions m x nand n x p respectively. Then, multiplication of. A by B denoted, A x B , is defined by matrix C of dimension m xp where.
Directory of Open Access Journals (Sweden)
Michala Jakubcová
2015-01-01
Full Text Available The presented paper provides the analysis of selected versions of the particl