Thermal depth profiling of vascular lesions: automated regularization of reconstruction algorithms
Energy Technology Data Exchange (ETDEWEB)
Verkruysse, Wim; Choi, Bernard; Zhang, Jenny R; Kim, Jeehyun; Nelson, J Stuart [Beckman Laser Institute and Medical Clinic, University of California, Irvine, CA 92612 (United States)], E-mail: wverkruy@uci.edu
2008-03-07
Pulsed photo-thermal radiometry (PPTR) is a non-invasive, non-contact diagnostic technique used to locate cutaneous chromophores such as melanin (epidermis) and hemoglobin (vascular structures). Clinical utility of PPTR is limited because it typically requires trained user intervention to regularize the inversion solution. Herein, the feasibility of automated regularization was studied. A second objective of this study was to depart from modeling port wine stain PWS, a vascular skin lesion frequently studied with PPTR, as strictly layered structures since this may influence conclusions regarding PPTR reconstruction quality. Average blood vessel depths, diameters and densities derived from histology of 30 PWS patients were used to generate 15 randomized lesion geometries for which we simulated PPTR signals. Reconstruction accuracy for subjective regularization was compared with that for automated regularization methods. The objective regularization approach performed better. However, the average difference was much smaller than the variation between the 15 simulated profiles. Reconstruction quality depended more on the actual profile to be reconstructed than on the reconstruction algorithm or regularization method. Similar, or better, accuracy reconstructions can be achieved with an automated regularization procedure which enhances prospects for user friendly implementation of PPTR to optimize laser therapy on an individual patient basis.
Zhou, Chaojie; Ding, Xiaohua; Zhang, Jie; Yang, Jungang; Ma, Qiang
2017-10-01
While global oceanic surface information with large-scale, real-time, high-resolution data is collected by satellite remote sensing instrumentation, three-dimensional (3D) observations are usually obtained from in situ measurements, but with minimal coverage and spatial resolution. To meet the needs of 3D ocean investigations, we have developed a new algorithm to reconstruct the 3D ocean temperature field based on the Array for Real-time Geostrophic Oceanography (Argo) profiles and sea surface temperature (SST) data. The Argo temperature profiles are first optimally fitted to generate a series of temperature functions of depth, with the vertical temperature structure represented continuously. By calculating the derivatives of the fitted functions, the calculation of the vertical temperature gradient of the Argo profiles at an arbitrary depth is accomplished. A gridded 3D temperature gradient field is then found by applying inverse distance weighting interpolation in the horizontal direction. Combined with the processed SST, the 3D temperature field reconstruction is realized below the surface using the gridded temperature gradient. Finally, to confirm the effectiveness of the algorithm, an experiment in the Pacific Ocean south of Japan is conducted, for which a 3D temperature field is generated. Compared with other similar gridded products, the reconstructed 3D temperature field derived by the proposed algorithm achieves satisfactory accuracy, with correlation coefficients of 0.99 obtained, including a higher spatial resolution (0.25° × 0.25°), resulting in the capture of smaller-scale characteristics. Finally, both the accuracy and the superiority of the algorithm are validated.
Tau reconstruction and identification algorithm
Indian Academy of Sciences (India)
2012-11-15
Nov 15, 2012 ... 13.35.Dx. 1. Introduction. Tau is the heaviest known lepton (Mτ = 1.78 GeV) which decays into lighter leptons. (BR ∼ 35%) or hadrons τh (BR ∼ 65%) in the presence of up to two neutrinos. The τ reconstruction algorithms are using decay mode identification techniques which allow one to reconstruct τh with ...
La Foy, Roderick; Vlachos, Pavlos
2011-11-01
An optimally designed MLOS tomographic reconstruction algorithm for use in 3D PIV and PTV applications is analyzed. Using a set of optimized reconstruction parameters, the reconstructions produced by the MLOS algorithm are shown to be comparable to reconstructions produced by the MART algorithm for a range of camera geometries, camera numbers, and particle seeding densities. The resultant velocity field error calculated using PIV and PTV algorithms is further minimized by applying both pre and post processing to the reconstructed data sets.
Variable Weighted Ordered Subset Image Reconstruction Algorithm
Directory of Open Access Journals (Sweden)
Jinxiao Pan
2006-01-01
Full Text Available We propose two variable weighted iterative reconstruction algorithms (VW-ART and VW-OS-SART to improve the algebraic reconstruction technique (ART and simultaneous algebraic reconstruction technique (SART and establish their convergence. In the two algorithms, the weighting varies with the geometrical direction of the ray. Experimental results with both numerical simulation and real CT data demonstrate that the VW-ART has a significant improvement in the quality of reconstructed images over ART and OS-SART. Moreover, both VW-ART and VW-OS-SART are more promising in convergence speed than the ART and SART, respectively.
New density profile reconstruction methods in X-mode reflectometry
Morales, R. B.; Hacquin, S.; Heuraux, S.; Sabot, R.
2017-04-01
The reconstruction method published by Bottollier-Curtet and Ichtchenko in 1987 has been the standard method of density profile reconstruction for X-mode reflectometry ever since, with only minor revision. Envisaging improved accuracy and stability of the reconstruction method, functions more complex than the linear are evaluated here to describe the refractive index shape in each integration step. The stability and accuracy obtained when using parabolic and fixed or adaptative fractional power functions are compared to the previous method and tested against spurious events and phase noise. The developed relation from the plasma parameters to the best integration shapes allows for the optimization of the reconstruction for any profile shape. In addition, the density profiles can be reconstructed using less probing frequencies without accuracy loss, which speed up the reconstruction algorithm and enable real-time monitoring of faster density profile evolution.
Innovative reconstruction algorithms in cardiac SPECT scintigraphy.
Zoccarato, O
2012-06-01
The recent entry into the market of some advanced iterative reconstruction algorithms (IA) optimized for bone and cardiac studies has raised a great interest among specialists in nuclear medicine. In particular, myocardial perfusion studies have received a significant boost thanks to the superior quality of images obtained with these new reconstruction methods. Differently from the filtered back-projection (FBP), the basic principles of the iterative reconstruction techniques are less known; unclear is the way by which the iterative methods are able to include compensations for the main degradation phenomena in SPECT imaging. Aim of this review is to provide a simple introduction to the iterative solution of the tomographic problem by using its matricial representation. This paper will also provide simple graphical examples of how phenomena such as attenuation and depth dependent resolution can be modelled in the projection operator. The main degrading factors in cardiac SPECT images will be retrieved along with some indication of the effectiveness of the corrections adopted. This step makes clear the noteworthy qualitative improvement obtained with these advanced algorithms. A brief summary of the main features of the most widespread new iterative reconstruction algorithms will be presented. The majority of manufacturers emphasize the reduction of acquisition times allowed by these innovative algorithms. Finally, because of the awareness of the increasing exposure of the population due to the increasing number of imaging studies with ionizing radiation, the use of these advanced algorithms to achieve a simultaneous reduction in patient dose and acquisition time will be also shown.
Limited angle C-arm tomosynthesis reconstruction algorithms
Malalla, Nuhad A. Y.; Xu, Shiyu; Chen, Ying
2015-03-01
In this paper, C-arm tomosynthesis with digital detector was investigated as a novel three dimensional (3D) imaging technique. Digital tomosythses is an imaging technique to provide 3D information of the object by reconstructing slices passing through the object, based on a series of angular projection views with respect to the object. C-arm tomosynthesis provides two dimensional (2D) X-ray projection images with rotation (-/+20 angular range) of both X-ray source and detector. In this paper, four representative reconstruction algorithms including point by point back projection (BP), filtered back projection (FBP), simultaneous algebraic reconstruction technique (SART) and maximum likelihood expectation maximization (MLEM) were investigated. Dataset of 25 projection views of 3D spherical object that located at center of C-arm imaging space was simulated from 25 angular locations over a total view angle of 40 degrees. With reconstructed images, 3D mesh plot and 2D line profile of normalized pixel intensities on focus reconstruction plane crossing the center of the object were studied with each reconstruction algorithm. Results demonstrated the capability to generate 3D information from limited angle C-arm tomosynthesis. Since C-arm tomosynthesis is relatively compact, portable and can avoid moving patients, it has been investigated for different clinical applications ranging from tumor surgery to interventional radiology. It is very important to evaluate C-arm tomosynthesis for valuable applications.
A very fast implementation of 2D iterative reconstruction algorithms
DEFF Research Database (Denmark)
Toft, Peter Aundal; Jensen, Peter James
1996-01-01
that iterative reconstruction algorithms can be implemented and run almost as fast as direct reconstruction algorithms. The method has been implemented in a software package that is available for free, providing reconstruction algorithms using ART, EM, and the Least Squares Conjugate Gradient Method...
Greedy algorithms for diffuse optical tomography reconstruction
Dileep, B. P. V.; Das, Tapan; Dutta, Pranab K.
2018-03-01
Diffuse optical tomography (DOT) is a noninvasive imaging modality that reconstructs the optical parameters of a highly scattering medium. However, the inverse problem of DOT is ill-posed and highly nonlinear due to the zig-zag propagation of photons that diffuses through the cross section of tissue. The conventional DOT imaging methods iteratively compute the solution of forward diffusion equation solver which makes the problem computationally expensive. Also, these methods fail when the geometry is complex. Recently, the theory of compressive sensing (CS) has received considerable attention because of its efficient use in biomedical imaging applications. The objective of this paper is to solve a given DOT inverse problem by using compressive sensing framework and various Greedy algorithms such as orthogonal matching pursuit (OMP), compressive sampling matching pursuit (CoSaMP), and stagewise orthogonal matching pursuit (StOMP), regularized orthogonal matching pursuit (ROMP) and simultaneous orthogonal matching pursuit (S-OMP) have been studied to reconstruct the change in the absorption parameter i.e, Δα from the boundary data. Also, the Greedy algorithms have been validated experimentally on a paraffin wax rectangular phantom through a well designed experimental set up. We also have studied the conventional DOT methods like least square method and truncated singular value decomposition (TSVD) for comparison. One of the main features of this work is the usage of less number of source-detector pairs, which can facilitate the use of DOT in routine applications of screening. The performance metrics such as mean square error (MSE), normalized mean square error (NMSE), structural similarity index (SSIM), and peak signal to noise ratio (PSNR) have been used to evaluate the performance of the algorithms mentioned in this paper. Extensive simulation results confirm that CS based DOT reconstruction outperforms the conventional DOT imaging methods in terms of
Advanced reconstruction algorithms for electron tomography: From comparison to combination
Energy Technology Data Exchange (ETDEWEB)
Goris, B. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Roelandts, T. [Vision Lab, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk (Belgium); Batenburg, K.J. [Vision Lab, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk (Belgium); Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); Heidari Mezerji, H. [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Bals, S., E-mail: sara.bals@ua.ac.be [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)
2013-04-15
In this work, the simultaneous iterative reconstruction technique (SIRT), the total variation minimization (TVM) reconstruction technique and the discrete algebraic reconstruction technique (DART) for electron tomography are compared and the advantages and disadvantages are discussed. Furthermore, we describe how the result of a three dimensional (3D) reconstruction based on TVM can provide objective information that is needed as the input for a DART reconstruction. This approach results in a tomographic reconstruction of which the segmentation is carried out in an objective manner. - Highlights: ► A comparative study between different reconstruction algorithms for tomography is performed. ► Reconstruction algorithms that uses prior knowledge about the specimen have a superior result. ► One reconstruction algorithm can provide the prior knowledge for a second algorithm.
Filtered refocusing: a volumetric reconstruction algorithm for plenoptic-PIV
Fahringer, Timothy W.; Thurow, Brian S.
2016-09-01
A new algorithm for reconstruction of 3D particle fields from plenoptic image data is presented. The algorithm is based on the technique of computational refocusing with the addition of a post reconstruction filter to remove the out of focus particles. This new algorithm is tested in terms of reconstruction quality on synthetic particle fields as well as a synthetically generated 3D Gaussian ring vortex. Preliminary results indicate that the new algorithm performs as well as the MART algorithm (used in previous work) in terms of the reconstructed particle position accuracy, but produces more elongated particles. The major advantage to the new algorithm is the dramatic reduction in the computational cost required to reconstruct a volume. It is shown that the new algorithm takes 1/9th the time to reconstruct the same volume as MART while using minimal resources. Experimental results are presented in the form of the wake behind a cylinder at a Reynolds number of 185.
Zhong, Liyun; Li, Hongyan; Tao, Tao; Zhang, Zhun; Lu, Xiaoxu
2011-11-07
To reach the limiting resolution of a digital holographic system and improve the displaying quality of the reconstructed image, the subdivision convolution algorithm and the subdivision Fresnel algorithm are presented, respectively. The obtained results show that the lateral size of the reconstructed image obtained by two kinds of subdivision algorithms is the same in the central region of the reconstructed image-plane; moreover, the size of the central region is in proportional to the recording distance. Importantly, in the central region of the reconstructed image-plane, the reconstruction can be performed by the subdivision Fresnel algorithm instead of the subdivision convolution algorithm effectively, and, based on these subdivision approaches, both the displaying quality and the resolution of the reconstructed image can be improved significantly. Furthermore, in the reconstruction of the digital hologram with the large numerical aperture, the computer's memory consumed and the calculating time resulting from the subdivision Fresnel algorithm is significantly less than those from the subdivision convolution algorithm.
Array antenna diagnostics with the 3D reconstruction algorithm
DEFF Research Database (Denmark)
Cappellin, Cecilia; Meincke, Peter; Pivnenko, Sergey
2012-01-01
The 3D reconstruction algorithm is applied to a slotted waveguide array measured at the DTU-ESA Spherical Near-Field Antenna Test Facility. One slot of the array is covered by conductive tape and an error is present in the array excitation. Results show the accuracy obtainable by the 3D...... reconstruction algorithm. Considerations on the measurement sampling, the obtainable spatial resolution, and the possibility of taking full advantage of the reconstruction geometry are provided....
Kim, Ye-seul; Park, Hye-suk; Lee, Haeng-Hwa; Choi, Young-Wook; Choi, Jae-Gu; Kim, Hak Hee; Kim, Hee-Joung
2016-02-01
Digital breast tomosynthesis (DBT) is a recently developed system for three-dimensional imaging that offers the potential to reduce the false positives of mammography by preventing tissue overlap. Many qualitative evaluations of digital breast tomosynthesis were previously performed by using a phantom with an unrealistic model and with heterogeneous background and noise, which is not representative of real breasts. The purpose of the present work was to compare reconstruction algorithms for DBT by using various breast phantoms; validation was also performed by using patient images. DBT was performed by using a prototype unit that was optimized for very low exposures and rapid readout. Three algorithms were compared: a back-projection (BP) algorithm, a filtered BP (FBP) algorithm, and an iterative expectation maximization (EM) algorithm. To compare the algorithms, three types of breast phantoms (homogeneous background phantom, heterogeneous background phantom, and anthropomorphic breast phantom) were evaluated, and clinical images were also reconstructed by using the different reconstruction algorithms. The in-plane image quality was evaluated based on the line profile and the contrast-to-noise ratio (CNR), and out-of-plane artifacts were evaluated by means of the artifact spread function (ASF). Parenchymal texture features of contrast and homogeneity were computed based on reconstructed images of an anthropomorphic breast phantom. The clinical images were studied to validate the effect of reconstruction algorithms. The results showed that the CNRs of masses reconstructed by using the EM algorithm were slightly higher than those obtained by using the BP algorithm, whereas the FBP algorithm yielded much lower CNR due to its high fluctuations of background noise. The FBP algorithm provides the best conspicuity for larger calcifications by enhancing their contrast and sharpness more than the other algorithms; however, in the case of small-size and low
A Novel Iterative CT Reconstruction Approach Based on FBP Algorithm.
Directory of Open Access Journals (Sweden)
Hongli Shi
Full Text Available The Filtered Back-Projection (FBP algorithm and its modified versions are the most important techniques for CT (Computerized tomography reconstruction, however, it may produce aliasing degradation in the reconstructed images due to projection discretization. The general iterative reconstruction (IR algorithms suffer from their heavy calculation burden and other drawbacks. In this paper, an iterative FBP approach is proposed to reduce the aliasing degradation. In the approach, the image reconstructed by FBP algorithm is treated as the intermediate image and projected along the original projection directions to produce the reprojection data. The difference between the original and reprojection data is filtered by a special digital filter, and then is reconstructed by FBP to produce a correction term. The correction term is added to the intermediate image to update it. This procedure can be performed iteratively to improve the reconstruction performance gradually until certain stopping criterion is satisfied. Some simulations and tests on real data show the proposed approach is better than FBP algorithm or some IR algorithms in term of some general image criteria. The calculation burden is several times that of FBP, which is much less than that of general IR algorithms and acceptable in the most situations. Therefore, the proposed algorithm has the potential applications in practical CT systems.
Optimization of Cone Beam CT Reconstruction Algorithm Based on CUDA
National Research Council Canada - National Science Library
Wang Li-Fang; Zhang Shu-Hai
2013-01-01
.... This paper optimizes cone beam CT reconstruction algorithm by CUDA and improves the speed of weighted back-projection and filtering, and shortens the data access time by using the texture memory...
Performance of the ATLAS primary vertex reconstruction algorithms
Zhang, Matt
2017-01-01
The reconstruction of primary vertices in the busy, high pile up environment of the LHC is a challenging task. The challenges and novel methods developed by the ATLAS experiment to reconstruct vertices in such environments will be presented. Such advances in vertex seeding include methods taken from medical imagining, which allow for reconstruction of very nearby vertices will be highlighted. The performance of the current vertexing algorithms using early Run-2 data will be presented and compared to results from simulation.
Convergence of iterative image reconstruction algorithms for Digital Breast Tomosynthesis
DEFF Research Database (Denmark)
Sidky, Emil; Jørgensen, Jakob Heide; Pan, Xiaochuan
2012-01-01
solutions can aid in iterative image reconstruction algorithm design. This issue is particularly acute for iterative image reconstruction in Digital Breast Tomosynthesis (DBT), where the corresponding data model IS particularly poorly conditioned. The impact of this poor conditioning is that iterative......Most iterative image reconstruction algorithms are based on some form of optimization, such as minimization of a data-fidelity term plus an image regularizing penalty term. While achieving the solution of these optimization problems may not directly be clinically relevant, accurate optimization...... algorithms applied to this system can be slow to converge. Recent developments in first-order algorithms are now beginning to allow for accurate solutions to optimization problems of interest to tomographic imaging in general. In particular, we investigate an algorithm developed by Chambolle and Pock (2011 J...
Directory of Open Access Journals (Sweden)
P. Xia
2013-10-01
Full Text Available Traditionally, balloon-based radiosonde soundings are used to study the spatial distribution of atmospheric water vapour. However, this approach cannot be frequently employed due to its high cost. In contrast, GPS tomography technique can obtain water vapour in a high temporal resolution. In the tomography technique, an iterative or non-iterative reconstruction algorithm is usually utilised to overcome rank deficiency of observation equations for water vapour inversion. However, the single iterative or non-iterative reconstruction algorithm has their limitations. For instance, the iterative reconstruction algorithm requires accurate initial values of water vapour while the non-iterative reconstruction algorithm needs proper constraint conditions. To overcome these drawbacks, we present a combined iterative and non-iterative reconstruction approach for the three-dimensional (3-D water vapour inversion using GPS observations and COSMIC profiles. In this approach, the non-iterative reconstruction algorithm is first used to estimate water vapour density based on a priori water vapour information derived from COSMIC radio occultation data. The estimates are then employed as initial values in the iterative reconstruction algorithm. The largest advantage of this approach is that precise initial values of water vapour density that are essential in the iterative reconstruction algorithm can be obtained. This combined reconstruction algorithm (CRA is evaluated using 10-day GPS observations in Hong Kong and COSMIC profiles. The test results indicate that the water vapor accuracy from CRA is 16 and 14% higher than that of iterative and non-iterative reconstruction approaches, respectively. In addition, the tomography results obtained from the CRA are further validated using radiosonde data. Results indicate that water vapour densities derived from the CRA agree with radiosonde results very well at altitudes above 2.5 km. The average RMS value of their
A new algorithm for 3D reconstruction from support functions
DEFF Research Database (Denmark)
Gardner, Richard; Kiderlen, Markus
2009-01-01
We introduce a new algorithm for reconstructing an unknown shape from a finite number of noisy measurements of its support function. The algorithm, based on a least squares procedure, is very easy to program in standard software such as Matlab and allows, for the first time, good 3D reconstructio...
A new iterative algorithm to reconstruct the refractive index.
Liu, Y J; Zhu, P P; Chen, B; Wang, J Y; Yuan, Q X; Huang, W X; Shu, H; Li, E R; Liu, X S; Zhang, K; Ming, H; Wu, Z Y
2007-06-21
The latest developments in x-ray imaging are associated with techniques based on the phase contrast. However, the image reconstruction procedures demand significant improvements of the traditional methods, and/or new algorithms have to be introduced to take advantage of the high contrast and sensitivity of the new experimental techniques. In this letter, an improved iterative reconstruction algorithm based on the maximum likelihood expectation maximization technique is presented and discussed in order to reconstruct the distribution of the refractive index from data collected by an analyzer-based imaging setup. The technique considered probes the partial derivative of the refractive index with respect to an axis lying in the meridional plane and perpendicular to the propagation direction. Computer simulations confirm the reliability of the proposed algorithm. In addition, the comparison between an analytical reconstruction algorithm and the iterative method has been also discussed together with the convergent characteristic of this latter algorithm. Finally, we will show how the proposed algorithm may be applied to reconstruct the distribution of the refractive index of an epoxy cylinder containing small air bubbles of about 300 micro of diameter.
A new jet reconstruction algorithm for lepton colliders
Boronat, Marça; Vos, Marcel
2014-01-01
We propose a new sequential jet reconstruction algorithm for future lepton colliders at the energy frontier. The Valencia algorithm combines the natural distance criterion for lepton colliders with the greater robustness against backgrounds of algorithms adapted to hadron colliders. Results on a detailed Monte Carlo simulation of $t\\bar{t}$ and $ZZ$ production at future linear $e^+e^-$ colliders (ILC and CLIC) with a realistic level of background overlaid, show that it achieves better performance in the presence of background.
Accelerating Popular Tomographic Reconstruction Algorithms on Commodity PC Graphics Hardware
Xu, Fang; Mueller, K.
2005-06-01
The task of reconstructing an object from its projections via tomographic methods is a time-consuming process due to the vast complexity of the data. For this reason, manufacturers of equipment for medical computed tomography (CT) rely mostly on special application specified integrated circuits (ASICs) to obtain the fast reconstruction times required in clinical settings. Although modern CPUs have gained sufficient power in recent years to be competitive for two-dimensional (2D) reconstruction, this is not the case for three-dimensional (3D) reconstructions, especially not when iterative algorithms must be applied. The recent evolution of commodity PC computer graphics boards (GPUs) has the potential to change this picture in a very dramatic way. In this paper we will show how the new floating point GPUs can be exploited to perform both analytical and iterative reconstruction from X-ray and functional imaging data. For this purpose, we decompose three popular three-dimensional (3D) reconstruction algorithms (Feldkamp filtered backprojection, the simultaneous algebraic reconstruction technique, and expectation maximization) into a common set of base modules, which all can be executed on the GPU and their output linked internally. Visualization of the reconstructed object is easily achieved since the object already resides in the graphics hardware, allowing one to run a visualization module at any time to view the reconstruction results. Our implementation allows speedups of over an order of magnitude with respect to CPU implementations, at comparable image quality.
Scalp reconstruction: an algorithmic approach and systematic review.
Desai, Shaun C; Sand, Jordan P; Sharon, Jeffrey D; Branham, Gregory; Nussenbaum, Brian
2015-01-01
Reconstruction of the scalp after acquired defects remains a common challenge for the reconstructive surgeon, especially in a patient with a history of radiation to the area. To review the current literature and describe a novel algorithm to help guide the reconstructive surgeon in determining the optimal reconstruction from a cosmetic and functional standpoint. Pertinent surgical anatomy, considerations for patient and technique selection, reconstructive goals, as well as the reconstructive ladder, are also discussed. A PubMed and Medline search was performed of the entire English literature with respect to scalp reconstruction. Priority of review was given to those studies with higher-quality levels of evidence. Size, location, radiation history, and potential for hairline distortion are important factors in determining the ideal reconstruction. The tighter and looser areas of the scalp play a major role in the potential for primary or local flap closure. Patients with medium to large defects and a history of radiation will likely benefit from free tissue transfer. Ideal reconstruction of scalp defects relies on a comprehensive understanding of scalp anatomy, a full consideration of the armamentarium of surgical techniques, and a detailed appraisal of patient factors and expectations. The simplest reconstruction should be used whenever possible to provide the most functional and aesthetic scalp reconstruction, with the least amount of complexity. NA.
New vertex reconstruction algorithms for CMS
Frühwirth, R; Prokofiev, Kirill; Speer, T.; Vanlaer, P.; Chabanat, E.; Estre, N.
2003-01-01
The reconstruction of interaction vertices can be decomposed into a pattern recognition problem (``vertex finding'') and a statistical problem (``vertex fitting''). We briefly review classical methods. We introduce novel approaches and motivate them in the framework of high-luminosity experiments like at the LHC. We then show comparisons with the classical methods in relevant physics channels
Reconstruction Algorithms in Undersampled AFM Imaging
DEFF Research Database (Denmark)
Arildsen, Thomas; Oxvig, Christian Schou; Pedersen, Patrick Steffen
2016-01-01
This paper provides a study of spatial undersampling in atomic force microscopy (AFM) imaging followed by different image reconstruction techniques based on sparse approximation as well as interpolation. The main reasons for using undersampling is that it reduces the path length and thereby the s...
Objective performance assessment of five computed tomography iterative reconstruction algorithms.
Omotayo, Azeez; Elbakri, Idris
2016-11-22
Iterative algorithms are gaining clinical acceptance in CT. We performed objective phantom-based image quality evaluation of five commercial iterative reconstruction algorithms available on four different multi-detector CT (MDCT) scanners at different dose levels as well as the conventional filtered back-projection (FBP) reconstruction. Using the Catphan500 phantom, we evaluated image noise, contrast-to-noise ratio (CNR), modulation transfer function (MTF) and noise-power spectrum (NPS). The algorithms were evaluated over a CTDIvol range of 0.75-18.7 mGy on four major MDCT scanners: GE DiscoveryCT750HD (algorithms: ASIR™ and VEO™); Siemens Somatom Definition AS+ (algorithm: SAFIRE™); Toshiba Aquilion64 (algorithm: AIDR3D™); and Philips Ingenuity iCT256 (algorithm: iDose4™). Images were reconstructed using FBP and the respective iterative algorithms on the four scanners. Use of iterative algorithms decreased image noise and increased CNR, relative to FBP. In the dose range of 1.3-1.5 mGy, noise reduction using iterative algorithms was in the range of 11%-51% on GE DiscoveryCT750HD, 10%-52% on Siemens Somatom Definition AS+, 49%-62% on Toshiba Aquilion64, and 13%-44% on Philips Ingenuity iCT256. The corresponding CNR increase was in the range 11%-105% on GE, 11%-106% on Siemens, 85%-145% on Toshiba and 13%-77% on Philips respectively. Most algorithms did not affect the MTF, except for VEO™ which produced an increase in the limiting resolution of up to 30%. A shift in the peak of the NPS curve towards lower frequencies and a decrease in NPS amplitude were obtained with all iterative algorithms. VEO™ required long reconstruction times, while all other algorithms produced reconstructions in real time. Compared to FBP, iterative algorithms reduced image noise and increased CNR. The iterative algorithms available on different scanners achieved different levels of noise reduction and CNR increase while spatial resolution improvements were obtained only with
An imaging algorithm for vertex reconstruction for ATLAS Run-2
The ATLAS collaboration
2015-01-01
The reconstruction of vertices corresponding to proton--proton collisions in ATLAS is an essential element of event reconstruction used in many performance studies and physics analyses. During Run-1 of the LHC, ATLAS has employed an iterative approach to vertex finding. In order to improve the flexibility of the algorithm and ensure continued performance for very high numbers of simultaneous collisions in future LHC data taking, a new approach to seeding vertex finding is being developed inspired by image reconstruction techniques. This note provides a brief outline of how reconstructed tracks are used to create an image of likely vertex collisions in an event and presents some preliminary results of the performance of the algorithm in simulation approximating early Run-2 conditions.
Efficient iterative image reconstruction algorithm for dedicated breast CT
Antropova, Natalia; Sanchez, Adrian; Reiser, Ingrid S.; Sidky, Emil Y.; Boone, John; Pan, Xiaochuan
2016-03-01
Dedicated breast computed tomography (bCT) is currently being studied as a potential screening method for breast cancer. The X-ray exposure is set low to achieve an average glandular dose comparable to that of mammography, yielding projection data that contains high levels of noise. Iterative image reconstruction (IIR) algorithms may be well-suited for the system since they potentially reduce the effects of noise in the reconstructed images. However, IIR outcomes can be difficult to control since the algorithm parameters do not directly correspond to the image properties. Also, IIR algorithms are computationally demanding and have optimal parameter settings that depend on the size and shape of the breast and positioning of the patient. In this work, we design an efficient IIR algorithm with meaningful parameter specifications and that can be used on a large, diverse sample of bCT cases. The flexibility and efficiency of this method comes from having the final image produced by a linear combination of two separately reconstructed images - one containing gray level information and the other with enhanced high frequency components. Both of the images result from few iterations of separate IIR algorithms. The proposed algorithm depends on two parameters both of which have a well-defined impact on image quality. The algorithm is applied to numerous bCT cases from a dedicated bCT prototype system developed at University of California, Davis.
Efficient reconstruction of dispersive dielectric profiles using time domain reflectometry (TDR
Directory of Open Access Journals (Sweden)
P. Leidenberger
2006-01-01
Full Text Available We present a numerical model for time domain reflectometry (TDR signal propagation in dispersive dielectric materials. The numerical probe model is terminated with a parallel circuit, consisting of an ohmic resistor and an ideal capacitance. We derive analytical approximations for the capacitance, the inductance and the conductance of three-wire probes. We couple the time domain model with global optimization in order to reconstruct water content profiles from TDR traces. For efficiently solving the inverse problem we use genetic algorithms combined with a hierarchical parameterization. We investigate the performance of the method by reconstructing synthetically generated profiles. The algorithm is then applied to retrieve dielectric profiles from TDR traces measured in the field. We succeed in reconstructing dielectric and ohmic profiles where conventional methods, based on travel time extraction, fail.
Unmatched Projector/Backprojector Pairs in an Iterative Reconstruction Algorithm
Zeng, Gengsheng L.; Gullberg, Grant T.
2000-01-01
Computational burden is a major concern when an iterative algorithm is used to reconstruct a three-dimensional (3-D) image with attenuation, detector response, and scatter corrections. Most of the computation time is spent executing the projector and backprojector of an iterative algorithm. Usually, the projector and the backprojector are transposed operators of each other. The projector should model the imaging geometry and physics as accurately as possible. Some researchers have used backpr...
Preconditioned Alternating Projection Algorithms for Maximum a Posteriori ECT Reconstruction.
Krol, Andrzej; Li, Si; Shen, Lixin; Xu, Yuesheng
2012-11-01
We propose a preconditioned alternating projection algorithm (PAPA) for solving the maximum a posteriori (MAP) emission computed tomography (ECT) reconstruction problem. Specifically, we formulate the reconstruction problem as a constrained convex optimization problem with the total variation (TV) regularization. We then characterize the solution of the constrained convex optimization problem and show that it satisfies a system of fixed-point equations defined in terms of two proximity operators raised from the convex functions that define the TV-norm and the constrain involved in the problem. The characterization (of the solution) via the proximity operators that define two projection operators naturally leads to an alternating projection algorithm for finding the solution. For efficient numerical computation, we introduce to the alternating projection algorithm a preconditioning matrix (the EM-preconditioner) for the dense system matrix involved in the optimization problem. We prove theoretically convergence of the preconditioned alternating projection algorithm. In numerical experiments, performance of our algorithms, with an appropriately selected preconditioning matrix, is compared with performance of the conventional MAP expectation-maximization (MAP-EM) algorithm with TV regularizer (EM-TV) and that of the recently developed nested EM-TV algorithm for ECT reconstruction. Based on the numerical experiments performed in this work, we observe that the alternating projection algorithm with the EM-preconditioner outperforms significantly the EM-TV in all aspects including the convergence speed, the noise in the reconstructed images and the image quality. It also outperforms the nested EM-TV in the convergence speed while providing comparable image quality.
Concluding Report: Quantitative Tomography Simulations and Reconstruction Algorithms
Energy Technology Data Exchange (ETDEWEB)
Aufderheide, M B; Martz, H E; Slone, D M; Jackson, J A; Schach von Wittenau, A E; Goodman, D M; Logan, C M; Hall, J M
2002-02-01
In this report we describe the original goals and final achievements of this Laboratory Directed Research and Development project. The Quantitative was Tomography Simulations and Reconstruction Algorithms project (99-ERD-015) funded as a multi-directorate, three-year effort to advance the state of the art in radiographic simulation and tomographic reconstruction by improving simulation and including this simulation in the tomographic reconstruction process. Goals were to improve the accuracy of radiographic simulation, and to couple advanced radiographic simulation tools with a robust, many-variable optimization algorithm. In this project, we were able to demonstrate accuracy in X-Ray simulation at the 2% level, which is an improvement of roughly a factor of 5 in accuracy, and we have successfully coupled our simulation tools with the CCG (Constrained Conjugate Gradient) optimization algorithm, allowing reconstructions that include spectral effects and blurring in the reconstructions. Another result of the project was the assembly of a low-scatter X-Ray imaging facility for use in nondestructive evaluation applications. We conclude with a discussion of future work.
A CUDA-based reverse gridding algorithm for MR reconstruction.
Yang, Jingzhu; Feng, Chaolu; Zhao, Dazhe
2013-02-01
MR raw data collected using non-Cartesian method can be transformed on Cartesian grids by traditional gridding algorithm (GA) and reconstructed by Fourier transform. However, its runtime complexity is O(K×N(2)), where resolution of raw data is N×N and size of convolution window (CW) is K. And it involves a large number of matrix calculation including modulus, addition, multiplication and convolution. Therefore, a Compute Unified Device Architecture (CUDA)-based algorithm is proposed to improve the reconstruction efficiency of PROPELLER (a globally recognized non-Cartesian sampling method). Experiment shows a write-write conflict among multiple CUDA threads. This induces an inconsistent result when synchronously convoluting multiple k-space data onto the same grid. To overcome this problem, a reverse gridding algorithm (RGA) was developed. Different from the method of generating a grid window for each trajectory as in traditional GA, RGA calculates a trajectory window for each grid. This is what "reverse" means. For each k-space point in the CW, contribution is cumulated to this grid. Although this algorithm can be easily extended to reconstruct other non-Cartesian sampled raw data, we only implement it based on PROPELLER. Experiment illustrates that this CUDA-based RGA has successfully solved the write-write conflict and its reconstruction speed is 7.5 times higher than that of traditional GA. Copyright © 2013 Elsevier Inc. All rights reserved.
Measuring the performance of super-resolution reconstruction algorithms
Dijk, J.; Schutte, K.; Eekeren, A.W.M. van; Bijl, P.
2012-01-01
For many military operations situational awareness is of great importance. This situational awareness and related tasks such as Target Acquisition can be acquired using cameras, of which the resolution is an important characteristic. Super resolution reconstruction algorithms can be used to improve
A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks
K.T. Huber; L.J.J. van Iersel (Leo); S.M. Kelk (Steven); R. Suchecki
2010-01-01
htmlabstractRecently much attention has been devoted to the construction of phylogenetic networks which generalize phylogenetic trees in order to accommodate complex evolutionary processes. Here we present an efficient, practical algorithm for reconstructing level-1 phylogenetic networks - a type of
Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach.
Directory of Open Access Journals (Sweden)
Christian L Barrett
2006-05-01
Full Text Available The number of complete, publicly available genome sequences is now greater than 200, and this number is expected to rapidly grow in the near future as metagenomic and environmental sequencing efforts escalate and the cost of sequencing drops. In order to make use of this data for understanding particular organisms and for discerning general principles about how organisms function, it will be necessary to reconstruct their various biochemical reaction networks. Principal among these will be transcriptional regulatory networks. Given the physical and logical complexity of these networks, the various sources of (often noisy data that can be utilized for their elucidation, the monetary costs involved, and the huge number of potential experiments approximately 10(12 that can be performed, experiment design algorithms will be necessary for synthesizing the various computational and experimental data to maximize the efficiency of regulatory network reconstruction. This paper presents an algorithm for experimental design to systematically and efficiently reconstruct transcriptional regulatory networks. It is meant to be applied iteratively in conjunction with an experimental laboratory component. The algorithm is presented here in the context of reconstructing transcriptional regulation for metabolism in Escherichia coli, and, through a retrospective analysis with previously performed experiments, we show that the produced experiment designs conform to how a human would design experiments. The algorithm is able to utilize probability estimates based on a wide range of computational and experimental sources to suggest experiments with the highest potential of discovering the greatest amount of new regulatory knowledge.
Consensus-based sparse signal reconstruction algorithm for wireless sensor networks
National Research Council Canada - National Science Library
Peng, Bao; Zhao, Zhi; Han, Guangjie; Shen, Jian
2016-01-01
This article presents a distributed Bayesian reconstruction algorithm for wireless sensor networks to reconstruct the sparse signals based on variational sparse Bayesian learning and consensus filter...
Filtered gradient reconstruction algorithm for compressive spectral imaging
Mejia, Yuri; Arguello, Henry
2017-04-01
Compressive sensing matrices are traditionally based on random Gaussian and Bernoulli entries. Nevertheless, they are subject to physical constraints, and their structure unusually follows a dense matrix distribution, such as the case of the matrix related to compressive spectral imaging (CSI). The CSI matrix represents the integration of coded and shifted versions of the spectral bands. A spectral image can be recovered from CSI measurements by using iterative algorithms for linear inverse problems that minimize an objective function including a quadratic error term combined with a sparsity regularization term. However, current algorithms are slow because they do not exploit the structure and sparse characteristics of the CSI matrices. A gradient-based CSI reconstruction algorithm, which introduces a filtering step in each iteration of a conventional CSI reconstruction algorithm that yields improved image quality, is proposed. Motivated by the structure of the CSI matrix, Φ, this algorithm modifies the iterative solution such that it is forced to converge to a filtered version of the residual ΦTy, where y is the compressive measurement vector. We show that the filtered-based algorithm converges to better quality performance results than the unfiltered version. Simulation results highlight the relative performance gain over the existing iterative algorithms.
Energy Technology Data Exchange (ETDEWEB)
Guo, J. [State Key Laboratory of Nuclear Physics and Technology and School of Physics, Peking University, 5 Yiheyuan Lu, Beijing 100871 (China); Lehrstuhl fuer Radiochemie, Technische Universitaet Muenchen, Garching 80748 (Germany); Buecherl, T. [Lehrstuhl fuer Radiochemie, Technische Universitaet Muenchen, Garching 80748 (Germany); Zou, Y., E-mail: zouyubin@pku.edu.cn [State Key Laboratory of Nuclear Physics and Technology and School of Physics, Peking University, 5 Yiheyuan Lu, Beijing 100871 (China); Guo, Z. [State Key Laboratory of Nuclear Physics and Technology and School of Physics, Peking University, 5 Yiheyuan Lu, Beijing 100871 (China)
2011-09-21
Investigations on the fast neutron beam geometry for the NECTAR facility are presented. The results of MCNP simulations and experimental measurements of the beam distributions at NECTAR are compared. Boltzmann functions are used to describe the beam profile in the detection plane assuming the area source to be set up of large number of single neutron point sources. An iterative algebraic reconstruction algorithm is developed, realized and verified by both simulated and measured projection data. The feasibility for improved reconstruction in fast neutron computerized tomography at the NECTAR facility is demonstrated.
A simple algorithm for analyzing uncertainty of accident reconstruction results.
Zou, Tiefang; Hu, Lin; Li, Pingfan; Wu, Hequan
2015-12-01
In order to analyzing the uncertainty in accident reconstruction, based on the theory of extreme value and the convex model theory, the uncertainty analysis problem is turn to an extreme value problem. In order to calculate the range of the dependent variable, the extreme value in the definition domain and on the boundary of the definition domain are calculated independently, and then the upper and lower bound of the dependent variable can be given by these obtained extreme values. Based on such idea and through analyzing five numerical cases, a simple algorithm for calculating the range of an accident reconstruction result was given; appropriate results can be obtained through the proposed algorithm in these cases. Finally, a real world vehicle-motorcycle accident was given, the range of the reconstructed velocity of the vehicle was calculated by employing the Pc-Crash, the response surface methodology and the new proposed algorithm, the range was [66.1-67.3] km/h. This research will provide another choice for uncertainty analysis in accident reconstruction. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.
A digitally reconstructed radiograph algorithm calculated from first principles
Staub, David; Murphy, Martin J.
2013-01-01
Purpose: To develop an algorithm for computing realistic digitally reconstructed radiographs (DRRs) that match real cone-beam CT (CBCT) projections with no artificial adjustments. Methods: The authors used measured attenuation data from cone-beam CT projection radiographs of different materials to obtain a function to convert CT number to linear attenuation coefficient (LAC). The effects of scatter, beam hardening, and veiling glare were first removed from the attenuation data. Using this conversion function the authors calculated the line integral of LAC through a CT along rays connecting the radiation source and detector pixels with a ray-tracing algorithm, producing raw DRRs. The effects of scatter, beam hardening, and veiling glare were then included in the DRRs through postprocessing. Results: The authors compared actual CBCT projections to DRRs produced with all corrections (scatter, beam hardening, and veiling glare) and to uncorrected DRRs. Algorithm accuracy was assessed through visual comparison of projections and DRRs, pixel intensity comparisons, intensity histogram comparisons, and correlation plots of DRR-to-projection pixel intensities. In general, the fully corrected algorithm provided a small but nontrivial improvement in accuracy over the uncorrected algorithm. The authors also investigated both measurement- and computation-based methods for determining the beam hardening correction, and found the computation-based method to be superior, as it accounted for nonuniform bowtie filter thickness. The authors benchmarked the algorithm for speed and found that it produced DRRs in about 0.35 s for full detector and CT resolution at a ray step-size of 0.5 mm. Conclusions: The authors have demonstrated a DRR algorithm calculated from first principles that accounts for scatter, beam hardening, and veiling glare in order to produce accurate DRRs. The algorithm is computationally efficient, making it a good candidate for iterative CT reconstruction techniques
Energy reconstruction and calibration algorithms for the ATLAS electromagnetic calorimeter
Delmastro, M
2003-01-01
The work of this thesis is devoted to the study, development and optimization of the algorithms of energy reconstruction and calibration for the electromagnetic calorimeter (EMC) of the ATLAS experiment, presently under installation and commissioning at the CERN Large Hadron Collider in Geneva (Switzerland). A deep study of the electrical characteristics of the detector and of the signals formation and propagation is conduced: an electrical model of the detector is developed and analyzed through simulations; a hardware model (mock-up) of a group of the EMC readout cells has been built, allowing the direct collection and properties study of the signals emerging from the EMC cells. We analyze the existing multiple-sampled signal reconstruction strategy, showing the need of an improvement in order to reach the advertised performances of the detector. The optimal filtering reconstruction technique is studied and implemented, taking into account the differences between the ionization and calibration waveforms as e...
New Algorithm of Seed Finding for Track Reconstruction
Baranov Dmitry; Merts Sergei; Ososkov Gennady; Rogachevsky Oleg
2016-01-01
Event reconstruction is a fundamental problem in the high energy physics experiments. It consists of track finding and track fitting procedures in the experiment tracking detectors. This requires a tremendous search of detector responses belonging to each track aimed at obtaining so-called “seeds”, i.e. initial approximations of track parameters of charged particles. In the paper we propose a new algorithm of the seedfinding procedure for the BM@N experiment.
New Algorithm of Seed Finding for Track Reconstruction
Directory of Open Access Journals (Sweden)
Baranov Dmitry
2016-01-01
Full Text Available Event reconstruction is a fundamental problem in the high energy physics experiments. It consists of track finding and track fitting procedures in the experiment tracking detectors. This requires a tremendous search of detector responses belonging to each track aimed at obtaining so-called “seeds”, i.e. initial approximations of track parameters of charged particles. In the paper we propose a new algorithm of the seedfinding procedure for the BM@N experiment.
Convergence of Algorithms for Reconstructing Convex Bodies and Directional Measures
DEFF Research Database (Denmark)
Gardner, Richard; Kiderlen, Markus; Milanfar, Peyman
2006-01-01
We investigate algorithms for reconstructing a convex body K in Rn from noisy measurements of its support function or its brightness function in k directions u1, . . . , uk. The key idea of these algorithms is to construct a convex polytope Pk whose support function (or brightness function) best...... approximates the given measurements in the directions u1, . . . , uk (in the least squares sense). The measurement errors are assumed to be stochastically independent and Gaussian. It is shown that this procedure is (strongly) consistent, meaning that almost surely, Pk tends to K in the Hausdor metric as k ! 1...... in k directions u1, . . . , uk. Here the Dudley and Prohorov metrics are used. The methods are linked to those employed for the support and brightness function algorithms via the fact that the rose of intersections is the support function of a projection body....
Tomographic reconstruction of transverse phase space from turn-by-turn profile data
Hancock, S; Lindroos, M
1999-01-01
Tomographic methods have the potential for useful application in beam diagnostics. The tomographic reconstruction of transverse phase space density from turn-by-turn profile data has been studied with particular attention to the effects of dispersion and chromaticity. It is shown that the modified Algebraic Reconstruction Technique (ART) that deals successfully with the problem of non-linear motion in the longitudinal plane cannot, in general, be extended to cover the transverse case. Instead, an approach is proposed in which the effect of dispersion is deconvoluted from the measured profiles before the phase space picture is reconstructed using either the modified ART algorithm or the inverse Radon Transform. This requires an accurate knowledge of the momentum distribution of the beam and the modified ART reconstruction of longitudinal phase space density yields just such information. The method has been tested extensively with simulated data.
Kim, Hyungjin; Park, Chang Min; Lee, Myunghee; Park, Sang Joon; Song, Yong Sub; Lee, Jong Hyuk; Hwang, Eui Jin; Goo, Jin Mo
2016-01-01
To identify the impact of reconstruction algorithms on CT radiomic features of pulmonary tumors and to reveal and compare the intra- and inter-reader and inter-reconstruction algorithm variability of each feature. Forty-two patients (M:F = 19:23; mean age, 60.43±10.56 years) with 42 pulmonary tumors (22.56±8.51mm) underwent contrast-enhanced CT scans, which were reconstructed with filtered back projection and commercial iterative reconstruction algorithm (level 3 and 5). Two readers independently segmented the whole tumor volume. Fifteen radiomic features were extracted and compared among reconstruction algorithms. Intra- and inter-reader variability and inter-reconstruction algorithm variability were calculated using coefficients of variation (CVs) and then compared. Among the 15 features, 5 first-order tumor intensity features and 4 gray level co-occurrence matrix (GLCM)-based features showed significant differences (palgorithms. As for the variability, effective diameter, sphericity, entropy, and GLCM entropy were the most robust features (CV≤5%). Inter-reader variability was larger than intra-reader or inter-reconstruction algorithm variability in 9 features. However, for entropy, homogeneity, and 4 GLCM-based features, inter-reconstruction algorithm variability was significantly greater than inter-reader variability (palgorithms. Inter-reconstruction algorithm variability was greater than inter-reader variability for entropy, homogeneity, and GLCM-based features.
Angle Statistics Reconstruction: a robust reconstruction algorithm for Muon Scattering Tomography
Stapleton, M.; Burns, J.; Quillin, S.; Steer, C.
2014-11-01
Muon Scattering Tomography (MST) is a technique for using the scattering of cosmic ray muons to probe the contents of enclosed volumes. As a muon passes through material it undergoes multiple Coulomb scattering, where the amount of scattering is dependent on the density and atomic number of the material as well as the path length. Hence, MST has been proposed as a means of imaging dense materials, for instance to detect special nuclear material in cargo containers. Algorithms are required to generate an accurate reconstruction of the material density inside the volume from the muon scattering information and some have already been proposed, most notably the Point of Closest Approach (PoCA) and Maximum Likelihood/Expectation Maximisation (MLEM) algorithms. However, whilst PoCA-based algorithms are easy to implement, they perform rather poorly in practice. Conversely, MLEM is a complicated algorithm to implement and computationally intensive and there is currently no published, fast and easily-implementable algorithm that performs well in practice. In this paper, we first provide a detailed analysis of the source of inaccuracy in PoCA-based algorithms. We then motivate an alternative method, based on ideas first laid out by Morris et al, presenting and fully specifying an algorithm that performs well against simulations of realistic scenarios. We argue this new algorithm should be adopted by developers of Muon Scattering Tomography as an alternative to PoCA.
Timing Analysis with INTEGRAL: Comparing Different Reconstruction Algorithms
Grinberg, V.; Kreykenboehm, I.; Fuerst, F.; Wilms, J.; Pottschmidt, K.; Bel, M. Cadolle; Rodriquez, J.; Marcu, D. M.; Suchy, S.; Markowitz, A.;
2010-01-01
INTEGRAL is one of the few instruments capable of detecting X-rays above 20keV. It is therefore in principle well suited for studying X-ray variability in this regime. Because INTEGRAL uses coded mask instruments for imaging, the reconstruction of light curves of X-ray sources is highly non-trivial. We present results from the comparison of two commonly employed algorithms, which primarily measure flux from mask deconvolution (ii-lc-extract) and from calculating the pixel illuminated fraction (ii-light). Both methods agree well for timescales above about 10 s, the highest time resolution for which image reconstruction is possible. For higher time resolution, ii-light produces meaningful results, although the overall variance of the lightcurves is not preserved.
Quantitative thermoacoustic image reconstruction of conductivity profiles
Ogunlade, Olumide; Cox, Ben; Beard, Paul
2012-02-01
A numerical inversion scheme for recovering a map of the absolute conductivity from the absorbed power density map that is conventionally reconstructed in thermacoustic imaging is described. This offers the prospect of obtaining an image that is more closely related to the underlying tissue structure and physiology. The inversion scheme employs a full 3D full wave model of electromagnetic propagation in tissue which is iteratively fitted to the measured absorbed power density map using a simple recursive method. The reconstruction is demonstrated numerically using three examples of absorbers of varying geometries, tissue realistic complex permittivity values and noise. In these examples, the reconstruction is shown to rapidly converge to within good estimates of the true conductivity in less than 20 iterations.
Shape reconstruction from apparent contours theory and algorithms
Bellettini, Giovanni; Paolini, Maurizio
2015-01-01
Motivated by a variational model concerning the depth of the objects in a picture and the problem of hidden and illusory contours, this book investigates one of the central problems of computer vision: the topological and algorithmic reconstruction of a smooth three dimensional scene starting from the visible part of an apparent contour. The authors focus their attention on the manipulation of apparent contours using a finite set of elementary moves, which correspond to diffeomorphic deformations of three dimensional scenes. A large part of the book is devoted to the algorithmic part, with implementations, experiments, and computed examples. The book is intended also as a user's guide to the software code appcontour, written for the manipulation of apparent contours and their invariants. This book is addressed to theoretical and applied scientists working in the field of mathematical models of image segmentation.
Statistical reconstruction algorithms for continuous wave electron spin resonance imaging
Kissos, Imry; Levit, Michael; Feuer, Arie; Blank, Aharon
2013-06-01
Electron spin resonance imaging (ESRI) is an important branch of ESR that deals with heterogeneous samples ranging from semiconductor materials to small live animals and even humans. ESRI can produce either spatial images (providing information about the spatially dependent radical concentration) or spectral-spatial images, where an extra dimension is added to describe the absorption spectrum of the sample (which can also be spatially dependent). The mapping of oxygen in biological samples, often referred to as oximetry, is a prime example of an ESRI application. ESRI suffers frequently from a low signal-to-noise ratio (SNR), which results in long acquisition times and poor image quality. A broader use of ESRI is hampered by this slow acquisition, which can also be an obstacle for many biological applications where conditions may change relatively quickly over time. The objective of this work is to develop an image reconstruction scheme for continuous wave (CW) ESRI that would make it possible to reduce the data acquisition time without degrading the reconstruction quality. This is achieved by adapting the so-called "statistical reconstruction" method, recently developed for other medical imaging modalities, to the specific case of CW ESRI. Our new algorithm accounts for unique ESRI aspects such as field modulation, spectral-spatial imaging, and possible limitation on the gradient magnitude (the so-called "limited angle" problem). The reconstruction method shows improved SNR and contrast recovery vs. commonly used back-projection-based methods, for a variety of simulated synthetic samples as well as in actual CW ESRI experiments.
Energy Technology Data Exchange (ETDEWEB)
Koyama, Hisanobu [Department of Radiology, Hyogo Kaibara Hospital, 5208-1 Kaibara, Kaibara-cho, Tanba 669-3395 (Japan)], E-mail: hisanobu19760104@yahoo.co.jp; Ohno, Yoshiharu [Department of Radiology, Kobe University Graduate School of Medicine, 7-5-2 Kusunoki-cho, Chuo-ku, Kobe 650-0017 (Japan)], E-mail: yosirad@kobe-u.ac.jp; Yamazaki, Youichi [Department of Medical Physics and Engineering, Faculty of Health Sciences, Graduate School of Medicine, Osaka University, 1-7 Yamadaoka, Suita 565-0871 (Japan)], E-mail: y.yamazk@sahs.med.osaka-u.ac.jp; Nogami, Munenobu [Division of PET, Institute of Biomedical Research and Innovation, 2-2 MInamimachi, Minatojima, Chu0-ku, Kobe 650-0047 (Japan)], E-mail: aznogami@fbri.org; Kusaka, Akiko [Division of Radiology, Kobe University Hospital, 7-5-2 Kusunoki-cho, Chuo-ku, Kobe 650-0017 (Japan)], E-mail: a.kusaka@hosp.kobe-u.ac.jp; Murase, Kenya [Department of Medical Physics and Engineering, Faculty of Health Sciences, Graduate School of Medicine, Osaka University, 1-7 Yamadaoka, Suita 565-0871 (Japan)], E-mail: murase@sahs.med.osaka-u.ac.jp; Sugimura, Kazuro [Department of Radiology, Kobe University Graduate School of Medicine, 7-5-2 Kusunoki-cho, Chuo-ku, Kobe 650-0017 (Japan)], E-mail: sugimura@med.kobe-u.ac.jp
2010-04-15
This study aimed the influences of reconstruction algorithm for quantitative assessments in interstitial pneumonia patients. A total of 25 collagen vascular disease patients (nine male patients and 16 female patients; mean age, 57.2 years; age range 32-77 years) underwent thin-section MDCT examinations, and MDCT data were reconstructed with three kinds of reconstruction algorithm (two high-frequencies [A and B] and one standard [C]). In reconstruction algorithm B, the effect of low- and middle-frequency space was suppressed compared with reconstruction algorithm A. As quantitative CT parameters, kurtosis, skewness, and mean lung density (MLD) were acquired from a frequency histogram of the whole lung parenchyma in each reconstruction algorithm. To determine the difference of quantitative CT parameters affected by reconstruction algorithms, these parameters were compared statistically. To determine the relationships with the disease severity, these parameters were correlated with PFTs. In the results, all the histogram parameters values had significant differences each other (p < 0.0001) and those of reconstruction algorithm C were the highest. All MLDs had fair or moderate correlation with all parameters of PFT (-0.64 < r < -0.45, p < 0.05). Though kurtosis and skewness in high-frequency reconstruction algorithm A had significant correlations with all parameters of PFT (-0.61 < r < -0.45, p < 0.05), there were significant correlations only with diffusing capacity of carbon monoxide (DLco) and total lung capacity (TLC) in reconstruction algorithm C and with forced expiratory volume in 1 s (FEV1), DLco and TLC in reconstruction algorithm B. In conclusion, reconstruction algorithm has influence to quantitative assessments on chest thin-section MDCT examination in interstitial pneumonia patients.
A parallel stereo reconstruction algorithm with applications in entomology (APSRA)
Bhasin, Rajesh; Jang, Won Jun; Hart, John C.
2012-03-01
We propose a fast parallel algorithm for the reconstruction of 3-Dimensional point clouds of insects from binocular stereo image pairs using a hierarchical approach for disparity estimation. Entomologists study various features of insects to classify them, build their distribution maps, and discover genetic links between specimens among various other essential tasks. This information is important to the pesticide and the pharmaceutical industries among others. When considering the large collections of insects entomologists analyze, it becomes difficult to physically handle the entire collection and share the data with researchers across the world. With the method presented in our work, Entomologists can create an image database for their collections and use the 3D models for studying the shape and structure of the insects thus making it easier to maintain and share. Initial feedback shows that the reconstructed 3D models preserve the shape and size of the specimen. We further optimize our results to incorporate multiview stereo which produces better overall structure of the insects. Our main contribution is applying stereoscopic vision techniques to entomology to solve the problems faced by entomologists.
Evaluation of image reconstruction algorithm for near infrared topography by virtual head phantom
Kawaguchi, Hiroshi; Okada, Eiji
2007-07-01
The poor spatial resolution and reproducibility of the images are disadvantages of near infrared topography. The authors proposed the combination of the double-density probe arrangement and the image reconstruction algorithm using a spatial sensitivity profile to improve the spatial resolution and the reproducibility. However, the proposed method was evaluated only by the simplified adult head model. It is uncertain whether the proposed method is effective to the actual head that has complicated structure. In this study, the proposed method is evaluated by the virtual head phantom the 3Dstructure of which is based upon an MRI scan of an adult head. The absorption change the size of which is almost equivalent to the width of the brain gyri was measured by the conventional method and the proposed method to evaluate the spatial resolution of the topographic images obtained by each method. The positions of the probe arrangements are slightly changed and the topographic images of the same brain activation measured by two probe positions are compared to evaluate the reproducibility of the NIR topography. The results indicate that the combination of the double-density probe arrangement and the image reconstruction algorithm using the spatial sensitivity profile can improve both the spatial resolution and the reproducibility of the topographic image of brain activation in the virtual head phantom. However, the uneven thickness of the superficial tissues affects the accuracy of the position of activation in the images.
A Super-resolution Reconstruction Algorithm for Surveillance Video
Directory of Open Access Journals (Sweden)
Jian Shao
2017-01-01
Full Text Available Recent technological developments have resulted in surveillance video becoming a primary method of preserving public security. Many city crimes are observed in surveillance video. The most abundant evidence collected by the police is also acquired through surveillance video sources. Surveillance video footage offers very strong support for solving criminal cases, therefore, creating an effective policy, and applying useful methods to the retrieval of additional evidence is becoming increasingly important. However, surveillance video has had its failings, namely, video footage being captured in low resolution (LR and bad visual quality. In this paper, we discuss the characteristics of surveillance video and describe the manual feature registration – maximum a posteriori – projection onto convex sets to develop a super-resolution reconstruction method, which improves the quality of surveillance video. From this method, we can make optimal use of information contained in the LR video image, but we can also control the image edge clearly as well as the convergence of the algorithm. Finally, we make a suggestion on how to adjust the algorithm adaptability by analyzing the prior information of target image.
Motion tolerant iterative reconstruction algorithm for cone-beam helical CT imaging
Energy Technology Data Exchange (ETDEWEB)
Takahashi, Hisashi; Goto, Taiga; Hirokawa, Koichi; Miyazaki, Osamu [Hitachi Medical Corporation, Chiba-ken (Japan). CT System Div.
2011-07-01
We have developed a new advanced iterative reconstruction algorithm for cone-beam helical CT. The features of this algorithm are: (a) it uses separable paraboloidal surrogate (SPS) technique as a foundation for reconstruction to reduce noise and cone-beam artifact, (b) it uses a view weight in the back-projection process to reduce motion artifact. To confirm the improvement of our proposed algorithm over other existing algorithm, such as Feldkamp-Davis-Kress (FDK) or SPS algorithm, we compared the motion artifact reduction, image noise reduction (standard deviation of CT number), and cone-beam artifact reduction on simulated and clinical data set. Our results demonstrate that the proposed algorithm dramatically reduces motion artifacts compared with the SPS algorithm, and decreases image noise compared with the FDK algorithm. In addition, the proposed algorithm potentially improves time resolution of iterative reconstruction. (orig.)
Efficient discrete cosine transform model-based algorithm for photoacoustic image reconstruction
Zhang, Yan; Wang, Yuanyuan; Zhang, Chen
2013-06-01
The model-based algorithm is an effective reconstruction method for photoacoustic imaging (PAI). Compared with the analytical reconstruction algorithms, the model-based algorithm is able to provide a more accurate and high-resolution reconstructed image. However, the relatively heavy computational complexity and huge memory storage requirement often impose restrictions on its applications. We incorporate the discrete cosine transform (DCT) in PAI reconstruction and establish a new photoacoustic model. With this new model, an efficient algorithm is proposed for PAI reconstruction. Relatively significant DCT coefficients of the measured signals are used to reconstruct the image. As a result, the calculation can be saved. The theoretical computation complexity of the proposed algorithm is figured out and it is proved that the proposed method is efficient in calculation. The proposed algorithm is also verified through the numerical simulations and in vitro experiments. Compared with former developed model-based methods, the proposed algorithm is able to provide an equivalent reconstruction with the cost of much less time. From the theoretical analysis and the experiment results, it would be concluded that the model-based PAI reconstruction can be accelerated by using the proposed algorithm, so that the practical applicability of PAI may be enhanced.
The influence of image reconstruction algorithms on linear thorax EIT image analysis of ventilation.
Zhao, Zhanqi; Frerichs, Inéz; Pulletz, Sven; Müller-Lisse, Ullrich; Möller, Knut
2014-06-01
Analysis methods of electrical impedance tomography (EIT) images based on different reconstruction algorithms were examined. EIT measurements were performed on eight mechanically ventilated patients with acute respiratory distress syndrome. A maneuver with step increase of airway pressure was performed. EIT raw data were reconstructed offline with (1) filtered back-projection (BP); (2) the Dräger algorithm based on linearized Newton-Raphson (DR); (3) the GREIT (Graz consensus reconstruction algorithm for EIT) reconstruction algorithm with a circular forward model (GR(C)) and (4) GREIT with individual thorax geometry (GR(T)). Individual thorax contours were automatically determined from the routine computed tomography images. Five indices were calculated on the resulting EIT images respectively: (a) the ratio between tidal and deep inflation impedance changes; (b) tidal impedance changes in the right and left lungs; (c) center of gravity; (d) the global inhomogeneity index and (e) ventilation delay at mid-dorsal regions. No significant differences were found in all examined indices among the four reconstruction algorithms (p > 0.2, Kruskal-Wallis test). The examined algorithms used for EIT image reconstruction do not influence the selected indices derived from the EIT image analysis. Indices that validated for images with one reconstruction algorithm are also valid for other reconstruction algorithms.
Choo, Ji Yung; Goo, Jin Mo; Lee, Chang Hyun; Park, Chang Min; Park, Sang Joon; Shim, Mi-Suk
2014-04-01
To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. • Computed tomography is increasingly used to provide objective measurements of intra-thoracic structures. • Iterative reconstruction algorithms can affect quantitative measurements of lung and airways. • Care should be taken in selecting reconstruction algorithms in longitudinal analysis. • Model-based iterative reconstruction seems to provide the most accurate airway measurements.
MR Image Reconstruction Based on Iterative Split Bregman Algorithm and Nonlocal Total Variation
Directory of Open Access Journals (Sweden)
Varun P. Gopi
2013-01-01
and least-square data-fitting term to reconstruct the MR images from undersampled k-space data. The nonlocal total variation is taken as the L1-regularization functional and solved using Split Bregman iteration. The proposed algorithm is compared with previous methods in terms of the reconstruction accuracy and computational complexity. The comparison results demonstrate the superiority of the proposed algorithm for compressed MR image reconstruction.
Peigang Ning; Shaocheng Zhu; Dapeng Shi; Ying Guo; Minghua Sun
2014-01-01
OBJECTIVE: This work aims to explore the effects of adaptive statistical iterative reconstruction (ASiR) and model-based iterative reconstruction (MBIR) algorithms in reducing computed tomography (CT) radiation dosages in abdominal imaging. METHODS: CT scans on a standard male phantom were performed at different tube currents. Images at the different tube currents were reconstructed with the filtered back-projection (FBP), 50% ASiR and MBIR algorithms and compared. The CT value, image noise a...
Directory of Open Access Journals (Sweden)
Mingjian Sun
2015-01-01
Full Text Available Photoacoustic imaging is an innovative imaging technique to image biomedical tissues. The time reversal reconstruction algorithm in which a numerical model of the acoustic forward problem is run backwards in time is widely used. In the paper, a time reversal reconstruction algorithm based on particle swarm optimization (PSO optimized support vector machine (SVM interpolation method is proposed for photoacoustics imaging. Numerical results show that the reconstructed images of the proposed algorithm are more accurate than those of the nearest neighbor interpolation, linear interpolation, and cubic convolution interpolation based time reversal algorithm, which can provide higher imaging quality by using significantly fewer measurement positions or scanning times.
Directory of Open Access Journals (Sweden)
Chen Deyun
2013-01-01
Full Text Available According to the image reconstruction accuracy influenced by the “soft field” nature and ill-conditioned problems in electrical capacitance tomography, a superresolution image reconstruction algorithm based on Landweber is proposed in the paper, which is based on the working principle of the electrical capacitance tomography system. The method uses the algorithm which is derived by regularization of solutions derived and derives closed solution by fast Fourier transform of the convolution kernel. So, it ensures the certainty of the solution and improves the stability and quality of image reconstruction results. Simulation results show that the imaging precision and real-time imaging of the algorithm are better than Landweber algorithm, and this algorithm proposes a new method for the electrical capacitance tomography image reconstruction algorithm.
Maximum entropy algorithm and its implementation for the neutral beam profile measurement
Energy Technology Data Exchange (ETDEWEB)
Lee, Seung Wook; Cho, Gyu Seong [Korea Advanced Institute of Science and Technology, Taejon (Korea, Republic of); Cho, Yong Sub [Korea Atomic Energy Research Institute, Taejon (Korea, Republic of)
1997-12-31
A tomography algorithm to maximize the entropy of image using Lagrangian multiplier technique and conjugate gradient method has been designed for the measurement of 2D spatial distribution of intense neutral beams of KSTAR NBI (Korea Superconducting Tokamak Advanced Research Neutral Beam Injector), which is now being designed. A possible detection system was assumed and a numerical simulation has been implemented to test the reconstruction quality of given beam profiles. This algorithm has the good applicability for sparse projection data and thus, can be used for the neutral beam tomography. 8 refs., 3 figs. (Author)
PARALLELISATION OF THE MODEL-BASED ITERATIVE RECONSTRUCTION ALGORITHM DIRA.
Örtenberg, A; Magnusson, M; Sandborg, M; Alm Carlsson, G; Malusek, A
2016-06-01
New paradigms for parallel programming have been devised to simplify software development on multi-core processors and many-core graphical processing units (GPU). Despite their obvious benefits, the parallelisation of existing computer programs is not an easy task. In this work, the use of the Open Multiprocessing (OpenMP) and Open Computing Language (OpenCL) frameworks is considered for the parallelisation of the model-based iterative reconstruction algorithm DIRA with the aim to significantly shorten the code's execution time. Selected routines were parallelised using OpenMP and OpenCL libraries; some routines were converted from MATLAB to C and optimised. Parallelisation of the code with the OpenMP was easy and resulted in an overall speedup of 15 on a 16-core computer. Parallelisation with OpenCL was more difficult owing to differences between the central processing unit and GPU architectures. The resulting speedup was substantially lower than the theoretical peak performance of the GPU; the cause was explained. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
Multiview and light-field reconstruction algorithms for 360° multiple-projector-type 3D display.
Zhong, Qing; Peng, Yifan; Li, Haifeng; Su, Chen; Shen, Weidong; Liu, Xu
2013-07-01
Both multiview and light-field reconstructions are proposed for a multiple-projector 3D display system. To compare the performance of the reconstruction algorithms in the same system, an optimized multiview reconstruction algorithm with sub-view-zones (SVZs) is proposed. The algorithm divided the conventional view zones in multiview display into several SVZs and allocates more view images. The optimized reconstruction algorithm unifies the conventional multiview reconstruction and light-field reconstruction algorithms, which can indicate the difference in performance when multiview reconstruction is changed to light-field reconstruction. A prototype consisting of 60 projectors with an arc diffuser as its screen is constructed to verify the algorithms. Comparison of different configurations of SVZs shows that light-field reconstruction provides large-scale 3D images with the smoothest motion parallax; thus it may provide better overall performance for large-scale 360° display than multiview reconstruction.
Nemenman, Ilya; Escola, G. Sean; Hlavacek, William S.; Unkefer, Pat J.; Unkefer, Clifford J.; Wall, Michael E.
2007-01-01
We investigate the ability of algorithms developed for reverse engineering of transcriptional regulatory networks to reconstruct metabolic networks from high-throughput metabolite profiling data. For this, we generate synthetic metabolic profiles for benchmarking purposes based on a well-established model for red blood cell metabolism. A variety of data sets is generated, accounting for different properties of real metabolic networks, such as experimental noise, metabolite correlations, and t...
Pálvölgyi, Jenö
2014-03-01
The traditional brachytherapy catheter reconstruction with biplane images is based on digitizing radio-opaque markers with a pointing device on a film or on a screen. An algorithm to automate digitization of radio-opaque marker coordinates on biplane images is presented. To obtain the marker coordinates in a proper sequence, instead of usual pair of reconstruction images, series of images were taken with insertion of radio-opaque markers consecutively into the catheters. The images were pre-processed to suppress the shield of anatomic structures. The determination of the marker coordinates is based on the detection of characteristic high gradient variation in pre-processed image profiles. The method was tested with six endometrial insertions performed with Simon-Norman catheters using our version of Heyman packing. 28 catheters of six treatment fractions were digitized, typically 10 markers per catheter. To obtain the marker coordinates, adjustment of two threshold levels on the pre-processed images were needed. The coordinates of the radio-opaque markers on the biplane projection images were obtained without positive or negative artefact. THE DUMMY SOURCE COORDINATES ON THE BIPLANE IMAGES WERE DIGITIZED IN A PROPER SEQUENCE: from the catheters' tip towards the end of the catheters. After the three-dimensional reconstruction of the catheters from the digitized coordinates, the geometry file was imported by the brachytherapy planning system for dose calculation. The method has the advantage to eliminate manual digitization of the dummy sources.
Sidky, Emil Y; Jørgensen, Jakob H; Pan, Xiaochuan
2012-05-21
The primal-dual optimization algorithm developed in Chambolle and Pock (CP) (2011 J. Math. Imag. Vis. 40 1-26) is applied to various convex optimization problems of interest in computed tomography (CT) image reconstruction. This algorithm allows for rapid prototyping of optimization problems for the purpose of designing iterative image reconstruction algorithms for CT. The primal-dual algorithm is briefly summarized in this paper, and its potential for prototyping is demonstrated by explicitly deriving CP algorithm instances for many optimization problems relevant to CT. An example application modeling breast CT with low-intensity x-ray illumination is presented.
DEFF Research Database (Denmark)
Sidky, Emil Y.; Jørgensen, Jakob Heide; Pan, Xiaochuan
2012-01-01
The primal–dual optimization algorithm developed in Chambolle and Pock (CP) (2011 J. Math. Imag. Vis. 40 1–26) is applied to various convex optimization problems of interest in computed tomography (CT) image reconstruction. This algorithm allows for rapid prototyping of optimization problems...... for the purpose of designing iterative image reconstruction algorithms for CT. The primal–dual algorithm is briefly summarized in this paper, and its potential for prototyping is demonstrated by explicitly deriving CP algorithm instances for many optimization problems relevant to CT. An example application...
Total variation based gradient descent algorithm for sparse-view photoacoustic image reconstruction.
Zhang, Yan; Wang, Yuanyuan; Zhang, Chen
2012-12-01
In photoacoustic imaging (PAI), reconstruction from sparse-view sampling data is a remaining challenge in the cases of fast or real-time imaging. In this paper, we present our study on a total variation based gradient descent (TV-GD) algorithm for sparse-view PAI reconstruction. This algorithm involves the total variation (TV) method in compressed sensing (CS) theory. The objective function of the algorithm is modified by adding the TV value of the reconstructed image. With this modification, the reconstructed image could be closer to the real optical energy distribution map. Additionally in the proposed algorithm, the photoacoustic data is processed and the image is updated individually at each detection point. In this way, the calculation with large matrix can be avoided and a more frequent image update can be obtained. Through the numerical simulations, the proposed algorithm is verified and compared with other reconstruction algorithms which have been widely used in PAI. The peak signal-to-noise ratio (PSNR) of the image reconstructed by this algorithm is higher than those by the other algorithms. Additionally, the convergence of the algorithm, the robustness to noise and the tunable parameter are further discussed. The TV-based algorithm is also implemented in the in vitro experiment. The better performance of the proposed method is revealed in the experiments results. From the results, it is seen that the TV-GD algorithm may be a practical and efficient algorithm for sparse-view PAI reconstruction. Copyright © 2012 Elsevier B.V. All rights reserved.
Research on super-resolution image reconstruction based on an improved POCS algorithm
Xu, Haiming; Miao, Hong; Yang, Chong; Xiong, Cheng
2015-07-01
Super-resolution image reconstruction (SRIR) can improve the fuzzy image's resolution; solve the shortage of the spatial resolution, excessive noise, and low-quality problem of the image. Firstly, we introduce the image degradation model to reveal the essence of super-resolution reconstruction process is an ill-posed inverse problem in mathematics. Secondly, analysis the blurring reason of optical imaging process - light diffraction and small angle scattering is the main reason for the fuzzy; propose an image point spread function estimation method and an improved projection onto convex sets (POCS) algorithm which indicate effectiveness by analyzing the changes between the time domain and frequency domain algorithm in the reconstruction process, pointed out that the improved POCS algorithms based on prior knowledge have the effect to restore and approach the high frequency of original image scene. Finally, we apply the algorithm to reconstruct synchrotron radiation computer tomography (SRCT) image, and then use these images to reconstruct the three-dimensional slice images. Comparing the differences between the original method and super-resolution algorithm, it is obvious that the improved POCS algorithm can restrain the noise and enhance the image resolution, so it is indicated that the algorithm is effective. This study and exploration to super-resolution image reconstruction by improved POCS algorithm is proved to be an effective method. It has important significance and broad application prospects - for example, CT medical image processing and SRCT ceramic sintering analyze of microstructure evolution mechanism.
Local ROI Reconstruction via Generalized FBP and BPF Algorithms along More Flexible Curves
Directory of Open Access Journals (Sweden)
2006-01-01
Full Text Available We study the local region-of-interest (ROI reconstruction problem, also referred to as the local CT problem. Our scheme includes two steps: (a the local truncated normal-dose projections are extended to global dataset by combining a few global low-dose projections; (b the ROI are reconstructed by either the generalized filtered backprojection (FBP or backprojection-filtration (BPF algorithms. The simulation results show that both the FBP and BPF algorithms can reconstruct satisfactory results with image quality in the ROI comparable to that of the corresponding global CT reconstruction.
A practical local tomography reconstruction algorithm based on known subregion
Paleo, Pierre; Mirone, Alessandro
2016-01-01
We propose a new method to reconstruct data acquired in a local tomography setup. This method uses an initial reconstruction and refines it by correcting the low frequency artifacts known as the cupping effect. A basis of Gaussian functions is used to correct the initial reconstruction. The coefficients of this basis are iteratively optimized under the constraint of a known subregion. Using a coarse basis reduces the degrees of freedom of the problem while actually correcting the cupping effect. Simulations show that the known region constraint yields an unbiased reconstruction, in accordance to uniqueness theorems stated in local tomography.
Thibaudeau, Christian
La tomodensitometrie (TDM) permet d'obtenir, et ce de facon non invasive, une image tridimensionnelle de l'anatomie interne d'un sujet. Elle constitue l'evolution logique de la radiographie et permet l'observation d'un volume sous differents plans (sagittal, coronal, axial ou n'importe quel autre plan). La TDM peut avantageusement completer la tomographie d'emission par positrons (TEP), un outil de predilection utilise en recherche biomedicale et pour le diagnostic du cancer. La TEP fournit une information fonctionnelle, physiologique et metabolique, permettant la localisation et la quantification de radiotraceurs a l'interieur du corps humain. Cette derniere possede une sensibilite inegalee, mais peut neanmoins souffrir d'une faible resolution spatiale et d'un manque de repere anatomique selon le radiotraceur utilise. La combinaison, ou fusion, des images TEP et TDM permet d'obtenir cette localisation anatomique de la distribution du radiotraceur. L'image TDM represente une carte de l'attenuation subie par les rayons-X lors de leur passage a travers les tissus. Elle permet donc aussi d'ameliorer la quantification de l'image TEP en offrant la possibilite de corriger pour l'attenuation. L'image TDM s'obtient par la transformation de profils d'attenuation en une image cartesienne pouvant etre interpretee par l'humain. Si la qualite de cette image est fortement influencee par les performances de l'appareil, elle depend aussi grandement de la capacite de l'algorithme de reconstruction a obtenir une representation fidele du milieu image. Les techniques de reconstruction standards, basees sur la retroprojection filtree (FBP, filtered back-projection), reposent sur un modele mathematiquement parfait de la geometrie d'acquisition. Une alternative a cette methode etalon est appelee reconstruction statistique, ou iterative. Elle permet d'obtenir de meilleurs resultats en presence de bruit ou d'une quantite limitee d'information et peut virtuellement s'adapter a toutes formes
A CT Reconstruction Algorithm Based on L1/2 Regularization
Directory of Open Access Journals (Sweden)
Mianyi Chen
2014-01-01
Full Text Available Computed tomography (CT reconstruction with low radiation dose is a significant research point in current medical CT field. Compressed sensing has shown great potential reconstruct high-quality CT images from few-view or sparse-view data. In this paper, we use the sparser L1/2 regularization operator to replace the traditional L1 regularization and combine the Split Bregman method to reconstruct CT images, which has good unbiasedness and can accelerate iterative convergence. In the reconstruction experiments with simulation and real projection data, we analyze the quality of reconstructed images using different reconstruction methods in different projection angles and iteration numbers. Compared with algebraic reconstruction technique (ART and total variance (TV based approaches, the proposed reconstruction algorithm can not only get better images with higher quality from few-view data but also need less iteration numbers.
Filtering of measurement noise with the 3D reconstruction algorithm
DEFF Research Database (Denmark)
Cappellin, Cecilia; Pivnenko, Sergey
2014-01-01
Two different antenna models are set up in GRASP and CHAMP, and noise is added to the radiated field. The noisy field is then given as input to the 3D reconstruction of DIATOOL and the SWE coefficients and the far-field radiated by the reconstructed currents are compared with the noise-free results...
An Approximate Cone Beam Reconstruction Algorithm for Gantry-Tilted CT Using Tangential Filtering
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Ming Yan
2006-01-01
Full Text Available FDK algorithm is a well-known 3D (three-dimensional approximate algorithm for CT (computed tomography image reconstruction and is also known to suffer from considerable artifacts when the scanning cone angle is large. Recently, it has been improved by performing the ramp filtering along the tangential direction of the X-ray source helix for dealing with the large cone angle problem. In this paper, we present an FDK-type approximate reconstruction algorithm for gantry-tilted CT imaging. The proposed method improves the image reconstruction by filtering the projection data along a proper direction which is determined by CT parameters and gantry-tilted angle. As a result, the proposed algorithm for gantry-tilted CT reconstruction can provide more scanning flexibilities in clinical CT scanning and is efficient in computation. The performance of the proposed algorithm is evaluated with turbell clock phantom and thorax phantom and compared with FDK algorithm and a popular 2D (two-dimensional approximate algorithm. The results show that the proposed algorithm can achieve better image quality for gantry-tilted CT image reconstruction.
DART: a robust algorithm for fast reconstruction of three-dimensional grain maps
DEFF Research Database (Denmark)
Batenburg, K.J.; Sijbers, J.; Poulsen, Henning Friis
2010-01-01
A novel algorithm is introduced for fast and nondestructive reconstruction of grain maps from X-ray diffraction data. The discrete algebraic reconstruction technique (DART) takes advantage of the intrinsic discrete nature of grain maps, while being based on iterative algebraic methods known from...... classical tomography. To test the properties of the algorithm, three-dimensional X-ray diffraction microscopy data are simulated and reconstructed with DART as well as by a conventional iterative technique, namely SIRT (simultaneous iterative reconstruction technique). For 100 × 100 pixel reconstructions...... and moderate noise levels, DART is shown to generate essentially perfect two-dimensional grain maps for as few as three projections per grain with running times on a PC in the range of less than a second. This is seen as opening up the possibility for fast reconstructions in connection with in situ studies....
DEFF Research Database (Denmark)
Cappellin, C.; Pivnenko, Sergey; Jørgensen, E.
2013-01-01
This paper focuses on three important features of the 3D reconstruction algorithm of DIATOOL: the identification of array elements improper functioning and failure, the obtainable spatial resolution of the reconstructed fields and currents, and the filtering of undesired radiation and scattering...
A regularization-free Young's modulus reconstruction algorithm for ultrasound elasticity imaging.
Pan, Xiaochang; Gao, Jing; Shao, Jinhua; Luo, Jianwen; Bai, Jing
2013-01-01
Ultrasound elasticity imaging aims to reconstruct the distribution of elastic modulus (e.g., Young's modulus) within biological tissues, since the value of elastic modulus is often related to pathological changes. Currently, most elasticity imaging algorithms face a challenge of choosing the value of the regularization constant. We propose a more applicable algorithm without the need of any regularization. This algorithm is not only simple to use, but has a relatively high accuracy. Our method comprises of a nonrigid registration technique and tissue incompressibility assumption to estimate the two-dimensional (2D) displacement field, and finite element method (FEM) to reconstruct the Young's modulus distribution. Simulation and phantom experiments are performed to evaluate the algorithm. Simulation and phantom results showed that the proposed algorithm can reconstruct the Young's modulus with an accuracy of 63∼85%.
A Total Variation Regularization Based Super-Resolution Reconstruction Algorithm for Digital Video
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Zhang Liangpei
2007-01-01
Full Text Available Super-resolution (SR reconstruction technique is capable of producing a high-resolution image from a sequence of low-resolution images. In this paper, we study an efficient SR algorithm for digital video. To effectively deal with the intractable problems in SR video reconstruction, such as inevitable motion estimation errors, noise, blurring, missing regions, and compression artifacts, the total variation (TV regularization is employed in the reconstruction model. We use the fixed-point iteration method and preconditioning techniques to efficiently solve the associated nonlinear Euler-Lagrange equations of the corresponding variational problem in SR. The proposed algorithm has been tested in several cases of motion and degradation. It is also compared with the Laplacian regularization-based SR algorithm and other TV-based SR algorithms. Experimental results are presented to illustrate the effectiveness of the proposed algorithm.
A pre-identification for electron reconstruction in the CMS particle-flow algorithm
Pioppi, Michele
2008-01-01
In the CMS software, a dedicated electron track reconstruction algorithm, based on a Gaussian Sum Filter (GSF), is used. This algorithm is able to follow an electron along its complete path up to the electromagnetic calorimeter, even in the case of a large amount of Bremsstrahlung emission. Because of the significant CPU consumption of this algorithm, it can, however, only be run on a limited number of candidates. The standard GSF electron track reconstruction is triggered by the presence of high energy isolated electromagnetic clusters, but it is not suited for electrons in jets (usually soft and not isolated). A pre-identification algorithm based on both the tracker and the calorimeter, was therefore recently developed. It allows electron tracks within jets to be efficiently reconstructed even for small electron transverse momentum. This algorithm as well as its performance in terms of efficiency, mis-identification probability are presented.
Fat-constrained 18F-FDG PET reconstruction using Dixon MR imaging and the origin ensemble algorithm
Wülker, Christian; Heinzer, Susanne; Börnert, Peter; Renisch, Steffen; Prevrhal, Sven
2015-03-01
Combined PET/MR imaging allows to incorporate the high-resolution anatomical information delivered by MRI into the PET reconstruction algorithm for improvement of PET accuracy beyond standard corrections. We used the working hypothesis that glucose uptake in adipose tissue is low. Thus, our aim was to shift 18F-FDG PET signal into image regions with a low fat content. Dixon MR imaging can be used to generate fat-only images via the water/fat chemical shift difference. On the other hand, the Origin Ensemble (OE) algorithm, a novel Markov chain Monte Carlo method, allows to reconstruct PET data without the use of forward- and back projection operations. By adequate modifications to the Markov chain transition kernel, it is possible to include anatomical a priori knowledge into the OE algorithm. In this work, we used the OE algorithm to reconstruct PET data of a modified IEC/NEMA Body Phantom simulating body water/fat composition. Reconstruction was performed 1) natively, 2) informed with the Dixon MR fat image to down-weight 18F-FDG signal in fatty tissue compartments in favor of adjacent regions, and 3) informed with the fat image to up-weight 18F-FDG signal in fatty tissue compartments, for control purposes. Image intensity profiles confirmed the visibly improved contrast and reduced partial volume effect at water/fat interfaces. We observed a 17+/-2% increased SNR of hot lesions surrounded by fat, while image quality was almost completely retained in fat-free image regions. An additional in vivo experiment proved the applicability of the presented technique in practice, and again verified the beneficial impact of fat-constrained OE reconstruction on PET image quality.
Quasi Gradient Projection Algorithm for Sparse Reconstruction in Compressed Sensing
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Xin Meng
2014-02-01
Full Text Available Compressed sensing is a novel signal sampling theory under the condition that the signal is sparse or compressible. The existing recovery algorithms based on the gradient projection can either need prior knowledge or recovery the signal poorly. In this paper, a new algorithm based on gradient projection is proposed, which is referred as Quasi Gradient Projection. The algorithm presented quasi gradient direction and two step sizes schemes along this direction. The algorithm doesn’t need any prior knowledge of the original signal. Simulation results demonstrate that the presented algorithm cans recovery the signal more correctly than GPSR which also don’t need prior knowledge. Meanwhile, the algorithm has a lower computation complexity.
Aguirre, Juan; Giannoula, Alexia; Minagawa, Taisuke; Funk, Lutz; Turon, Pau; Durduran, Turgut
2013-01-01
A model based reconstruction algorithm that exploits translational symmetries for photoacoustic microscopy to drastically reduce the memory cost is presented. The memory size needed to store the model matrix is independent of the number of acquisitions at different positions. This helps us to overcome one of the main limitations of previous algorithms. Furthermore, using the algebraic reconstruction technique and building the model matrix "on the fly", we have obtained fast reconstructions of simulated and experimental data on both two- and three-dimensional grids using a traditional dark field photoacoustic microscope and a standard personal computer.
Back, J. J.; Barker, G. J.; Boyd, S. B.; Einbeck, J.; Haigh, M.; Morgan, B.; Oakley, B.; Ramachers, Y. A.; Roythorne, D.
2014-03-01
A local principal curve algorithm has been implemented in three dimensions for automated track and shower reconstruction of neutrino interactions in a liquid argon time projection chamber. We present details of the algorithm and characterise its performance on simulated data sets.
Algorithms and software for total variation image reconstruction via first-order methods
DEFF Research Database (Denmark)
Dahl, Joahim; Hansen, Per Christian; Jensen, Søren Holdt
2010-01-01
This paper describes new algorithms and related software for total variation (TV) image reconstruction, more specifically: denoising, inpainting, and deblurring. The algorithms are based on one of Nesterov's first-order methods, tailored to the image processing applications in such a way that...
Directory of Open Access Journals (Sweden)
Wei Yu
Full Text Available In practical applications of computed tomography (CT imaging, due to the risk of high radiation dose imposed on the patients, it is desired that high quality CT images can be accurately reconstructed from limited projection data. While with limited projections, the images reconstructed often suffer severe artifacts and the edges of the objects are blurred. In recent years, the compressed sensing based reconstruction algorithm has attracted major attention for CT reconstruction from a limited number of projections. In this paper, to eliminate the streak artifacts and preserve the edge structure information of the object, we present a novel iterative reconstruction algorithm based on weighted total difference (WTD minimization, and demonstrate the superior performance of this algorithm. The WTD measure enforces both the sparsity and the directional continuity in the gradient domain, while the conventional total difference (TD measure simply enforces the gradient sparsity horizontally and vertically. To solve our WTD-based few-view CT reconstruction model, we use the soft-threshold filtering approach. Numerical experiments are performed to validate the efficiency and the feasibility of our algorithm. For a typical slice of FORBILD head phantom, using 40 projections in the experiments, our algorithm outperforms the TD-based algorithm with more than 60% gains in terms of the root-mean-square error (RMSE, normalized root mean square distance (NRMSD and normalized mean absolute distance (NMAD measures and with more than 10% gains in terms of the peak signal-to-noise ratio (PSNR measure. While for the experiments of noisy projections, our algorithm outperforms the TD-based algorithm with more than 15% gains in terms of the RMSE, NRMSD and NMAD measures and with more than 4% gains in terms of the PSNR measure. The experimental results indicate that our algorithm achieves better performance in terms of suppressing streak artifacts and preserving the edge
Hybrid iterative reconstruction algorithm improves image quality in craniocervical CT angiography.
Löve, Askell; Siemund, Roger; Höglund, Peter; Ramgren, Birgitta; Undrén, Per; Björkman-Burtscher, Isabella M
2013-12-01
The purpose of this study was to evaluate the potential of a hybrid iterative reconstruction algorithm for improving image quality in craniocervical CT angiography (CTA) and to assess observer performance. Thirty patients (mean age, 58 years; range 16-80 years) underwent standard craniocervical CTA (volume CT dose index, 6.8 mGy, 2.8 mSv). Images were reconstructed using both filtered back projection (FBP) and a hybrid iterative reconstruction algorithm. Five neuroradiologists assessed general image quality and delineation of the vessel lumen in seven arterial segments using a 4-grade scale. Interobserver and intraobserver variability were determined. Mean attenuation and noise were measured and signal-to-noise and contrast-to-noise ratios calculated. Descriptive statistics are presented and data analyzed using linear mixed-effects models. In pooled data, image quality in iterative reconstruction was graded superior to FBP regarding all five quality criteria (p Iterative reconstruction resulted in elimination of arterial segments graded poor. Interobserver percentage agreement was significantly better (p = 0.024) for iterative reconstruction (69%) than for FBP (66%) but worse than intraobserver percentage agreement (mean, 79%). Noise levels, signal-to-noise ratio, and contrast-to-noise ratio were significantly (p iterative reconstruction at all measured levels. The iterative reconstruction algorithm significantly improves image quality in craniocervical CT, especially at the thoracic inlet. Despite careful study design, considerable interobserver and intraobserver variability was noted.
Zeng, Rongping; Badano, Aldo; Myers, Kyle J.
2017-04-01
We showed in our earlier work that the choice of reconstruction methods does not affect the optimization of DBT acquisition parameters (angular span and number of views) using simulated breast phantom images in detecting lesions with a channelized Hotelling observer (CHO). In this work we investigate whether the model-observer based conclusion is valid when using humans to interpret images. We used previously generated DBT breast phantom images and recruited human readers to find the optimal geometry settings associated with two reconstruction algorithms, filtered back projection (FBP) and simultaneous algebraic reconstruction technique (SART). The human reader results show that image quality trends as a function of the acquisition parameters are consistent between FBP and SART reconstructions. The consistent trends confirm that the optimization of DBT system geometry is insensitive to the choice of reconstruction algorithm. The results also show that humans perform better in SART reconstructed images than in FBP reconstructed images. In addition, we applied CHOs with three commonly used channel models, Laguerre-Gauss (LG) channels, square (SQR) channels and sparse difference-of-Gaussian (sDOG) channels. We found that LG channels predict human performance trends better than SQR and sDOG channel models for the task of detecting lesions in tomosynthesis backgrounds. Overall, this work confirms that the choice of reconstruction algorithm is not critical for optimizing DBT system acquisition parameters.
TauFinder: A Reconstruction Algorithm for τ Leptons at Linear Colliders
Muennich, A
2010-01-01
An algorithm to find and reconstruct τ leptons was developed, which targets τs that produce high energetic, low multiplicity jets as can be observed at multi TeV e+e− collisions. However, it makes no assumption about the decay of the τ candidate thus finding hadronic as well as leptonic decays. The algorithm delivers a reconstructed τ as seen by the detector. This note provides an overview of the algorithm, the cuts used and gives some evaluation of the performance. A first implementation is available within the ILC software framework as a MAR- LIN processor . Appendix A is intended as a short user manual.
Zhang, Chen; Li, Dahai; Li, Mengyang; E, Kewei
2017-10-01
A novel wavefront reconstruction algorithm for radial shearing interferometer (RSI) is proposed in this paper. Based on the shearing relationship of RSI, an interpolation coefficient matrix is established by the radial shearing ratio and the number of discrete points of test wavefront. Accordingly, the expanded wavefront is characterized by the interpolation coefficient matrix and the test wavefront. Consequently the test wavefront can be calculated from the phase difference wavefront. The numerical simulation is conducted to confirm the correctness of the proposed algorithm. Compared with the previous wavefront reconstruction methods, the proposed algorithm is more accurate and stable.
Fast algorithms for nonconvex compression sensing: MRI reconstruction from very few data
Energy Technology Data Exchange (ETDEWEB)
Chartrand, Rick [Los Alamos National Laboratory
2009-01-01
Compressive sensing is the reconstruction of sparse images or signals from very few samples, by means of solving a tractable optimization problem. In the context of MRI, this can allow reconstruction from many fewer k-space samples, thereby reducing scanning time. Previous work has shown that nonconvex optimization reduces still further the number of samples required for reconstruction, while still being tractable. In this work, we extend recent Fourier-based algorithms for convex optimization to the nonconvex setting, and obtain methods that combine the reconstruction abilities of previous nonconvex approaches with the computational speed of state-of-the-art convex methods.
Reconstruction algorithm medical imaging DRR; Algoritmo de construccion de imagenes medicas DRR
Energy Technology Data Exchange (ETDEWEB)
Estrada Espinosa, J. C.
2013-07-01
The method of reconstruction for digital radiographic Imaging (DRR), is based on two orthogonal images, on the dorsal and lateral decubitus position of the simulation. DRR images are reconstructed with an algorithm that simulates running a conventional X-ray, a single rendition team, beam emitted is not divergent, in this case, the rays are considered to be parallel in the image reconstruction DRR, for this purpose, it is necessary to use all the values of the units (HU) hounsfield of each voxel in all axial cuts that form the study TC, finally obtaining the reconstructed image DRR performing a transformation from 3D to 2D. (Author)
Practical algorithms for simulation and reconstruction of digital in-line holograms.
Latychevskaia, Tatiana; Fink, Hans-Werner
2015-03-20
Here we present practical methods for simulation and reconstruction of in-line digital holograms recorded with plane and spherical waves. The algorithms described here are applicable to holographic imaging of an object exhibiting absorption as well as phase-shifting properties. Optimal parameters, related to distances, sampling rate, and other factors for successful simulation and reconstruction of holograms are evaluated and criteria for the achievable resolution are worked out. Moreover, we show that the numerical procedures for the reconstruction of holograms recorded with plane and spherical waves are identical under certain conditions. Experimental examples of holograms and their reconstructions are also discussed.
A BPF-FBP tandem algorithm for image reconstruction in reverse helical cone-beam CT.
Cho, Seungryong; Xia, Dan; Pellizzari, Charles A; Pan, Xiaochuan
2010-01-01
Reverse helical cone-beam computed tomography (CBCT) is a scanning configuration for potential applications in image-guided radiation therapy in which an accurate anatomic image of the patient is needed for image-guidance procedures. The authors previously developed an algorithm for image reconstruction from nontruncated data of an object that is completely within the reverse helix. The purpose of this work is to develop an image reconstruction approach for reverse helical CBCT of a long object that extends out of the reverse helix and therefore constitutes data truncation. The proposed approach comprises of two reconstruction steps. In the first step, a chord-based backprojection-filtration (BPF) algorithm reconstructs a volumetric image of an object from the original cone-beam data. Because there exists a chordless region in the middle of the reverse helix, the image obtained in the first step contains an unreconstructed central-gap region. In the second step, the gap region is reconstructed by use of a Pack-Noo-formula-based filteredback-projection (FBP) algorithm from the modified cone-beam data obtained by subtracting from the original cone-beam data the reprojection of the image reconstructed in the first step. The authors have performed numerical studies to validate the proposed approach in image reconstruction from reverse helical cone-beam data. The results confirm that the proposed approach can reconstruct accurate images of a long object without suffering from data-truncation artifacts or cone-angle artifacts. They developed and validated a BPF-FBP tandem algorithm to reconstruct images of a long object from reverse helical cone-beam data. The chord-based BPF algorithm was utilized for converting the long-object problem into a short-object problem. The proposed approach is applicable to other scanning configurations such as reduced circular sinusoidal trajectories.
Accelerating electron tomography reconstruction algorithm ICON with GPU.
Chen, Yu; Wang, Zihao; Zhang, Jingrong; Li, Lun; Wan, Xiaohua; Sun, Fei; Zhang, Fa
2017-01-01
Electron tomography (ET) plays an important role in studying in situ cell ultrastructure in three-dimensional space. Due to limited tilt angles, ET reconstruction always suffers from the "missing wedge" problem. With a validation procedure, iterative compressed-sensing optimized NUFFT reconstruction (ICON) demonstrates its power in the restoration of validated missing information for low SNR biological ET dataset. However, the huge computational demand has become a major problem for the application of ICON. In this work, we analyzed the framework of ICON and classified the operations of major steps of ICON reconstruction into three types. Accordingly, we designed parallel strategies and implemented them on graphics processing units (GPU) to generate a parallel program ICON-GPU. With high accuracy, ICON-GPU has a great acceleration compared to its CPU version, up to 83.7×, greatly relieving ICON's dependence on computing resource.
Mikhaylova, E.; Kolstein, M.; De Lorenzo, G.; Chmeissani, M.
2014-01-01
A novel positron emission tomography (PET) scanner design based on a room-temperature pixelated CdTe solid-state detector is being developed within the framework of the Voxel Imaging PET (VIP) Pathfinder project [1]. The simulation results show a great potential of the VIP to produce high-resolution images even in extremely challenging conditions such as the screening of a human head [2]. With unprecedented high channel density (450 channels/cm3) image reconstruction is a challenge. Therefore optimization is needed to find the best algorithm in order to exploit correctly the promising detector potential. The following reconstruction algorithms are evaluated: 2-D Filtered Backprojection (FBP), Ordered Subset Expectation Maximization (OSEM), List-Mode OSEM (LM-OSEM), and the Origin Ensemble (OE) algorithm. The evaluation is based on the comparison of a true image phantom with a set of reconstructed images obtained by each algorithm. This is achieved by calculation of image quality merit parameters such as the bias, the variance and the mean square error (MSE). A systematic optimization of each algorithm is performed by varying the reconstruction parameters, such as the cutoff frequency of the noise filters and the number of iterations. The region of interest (ROI) analysis of the reconstructed phantom is also performed for each algorithm and the results are compared. Additionally, the performance of the image reconstruction methods is compared by calculating the modulation transfer function (MTF). The reconstruction time is also taken into account to choose the optimal algorithm. The analysis is based on GAMOS [3] simulation including the expected CdTe and electronic specifics. PMID:25018777
Bosch, Carl; Degirmenci, Soysal; Barlow, Jason; Mesika, Assaf; Politte, David G.; O'Sullivan, Joseph A.
2016-05-01
X-ray computed tomography reconstruction for medical, security and industrial applications has evolved through 40 years of experience with rotating gantry scanners using analytic reconstruction techniques such as filtered back projection (FBP). In parallel, research into statistical iterative reconstruction algorithms has evolved to apply to sparse view scanners in nuclear medicine, low data rate scanners in Positron Emission Tomography (PET) [5, 7, 10] and more recently to reduce exposure to ionizing radiation in conventional X-ray CT scanners. Multiple approaches to statistical iterative reconstruction have been developed based primarily on variations of expectation maximization (EM) algorithms. The primary benefit of EM algorithms is the guarantee of convergence that is maintained when iterative corrections are made within the limits of convergent algorithms. The primary disadvantage, however is that strict adherence to correction limits of convergent algorithms extends the number of iterations and ultimate timeline to complete a 3D volumetric reconstruction. Researchers have studied methods to accelerate convergence through more aggressive corrections [1], ordered subsets [1, 3, 4, 9] and spatially variant image updates. In this paper we describe the development of an AM reconstruction algorithm with accelerated convergence for use in a real-time explosive detection application for aviation security. By judiciously applying multiple acceleration techniques and advanced GPU processing architectures, we are able to perform 3D reconstruction of scanned passenger baggage at a rate of 75 slices per second. Analysis of the results on stream of commerce passenger bags demonstrates accelerated convergence by factors of 8 to 15, when comparing images from accelerated and strictly convergent algorithms.
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
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C. O. S. Sorzano
2017-01-01
Full Text Available One of the key steps in Electron Microscopy is the tomographic reconstruction of a three-dimensional (3D map of the specimen being studied from a set of two-dimensional (2D projections acquired at the microscope. This tomographic reconstruction may be performed with different reconstruction algorithms that can be grouped into several large families: direct Fourier inversion methods, back-projection methods, Radon methods, or iterative algorithms. In this review, we focus on the latter family of algorithms, explaining the mathematical rationale behind the different algorithms in this family as they have been introduced in the field of Electron Microscopy. We cover their use in Single Particle Analysis (SPA as well as in Electron Tomography (ET.
Reconstruction of a digital core containing clay minerals based on a clustering algorithm.
He, Yanlong; Pu, Chunsheng; Jing, Cheng; Gu, Xiaoyu; Chen, Qingdong; Liu, Hongzhi; Khan, Nasir; Dong, Qiaoling
2017-10-01
It is difficult to obtain a core sample and information for digital core reconstruction of mature sandstone reservoirs around the world, especially for an unconsolidated sandstone reservoir. Meanwhile, reconstruction and division of clay minerals play a vital role in the reconstruction of the digital cores, although the two-dimensional data-based reconstruction methods are specifically applicable as the microstructure reservoir simulation methods for the sandstone reservoir. However, reconstruction of clay minerals is still challenging from a research viewpoint for the better reconstruction of various clay minerals in the digital cores. In the present work, the content of clay minerals was considered on the basis of two-dimensional information about the reservoir. After application of the hybrid method, and compared with the model reconstructed by the process-based method, the digital core containing clay clusters without the labels of the clusters' number, size, and texture were the output. The statistics and geometry of the reconstruction model were similar to the reference model. In addition, the Hoshen-Kopelman algorithm was used to label various connected unclassified clay clusters in the initial model and then the number and size of clay clusters were recorded. At the same time, the K-means clustering algorithm was applied to divide the labeled, large connecting clusters into smaller clusters on the basis of difference in the clusters' characteristics. According to the clay minerals' characteristics, such as types, textures, and distributions, the digital core containing clay minerals was reconstructed by means of the clustering algorithm and the clay clusters' structure judgment. The distributions and textures of the clay minerals of the digital core were reasonable. The clustering algorithm improved the digital core reconstruction and provided an alternative method for the simulation of different clay minerals in the digital cores.
Reconstruction of a digital core containing clay minerals based on a clustering algorithm
He, Yanlong; Pu, Chunsheng; Jing, Cheng; Gu, Xiaoyu; Chen, Qingdong; Liu, Hongzhi; Khan, Nasir; Dong, Qiaoling
2017-10-01
It is difficult to obtain a core sample and information for digital core reconstruction of mature sandstone reservoirs around the world, especially for an unconsolidated sandstone reservoir. Meanwhile, reconstruction and division of clay minerals play a vital role in the reconstruction of the digital cores, although the two-dimensional data-based reconstruction methods are specifically applicable as the microstructure reservoir simulation methods for the sandstone reservoir. However, reconstruction of clay minerals is still challenging from a research viewpoint for the better reconstruction of various clay minerals in the digital cores. In the present work, the content of clay minerals was considered on the basis of two-dimensional information about the reservoir. After application of the hybrid method, and compared with the model reconstructed by the process-based method, the digital core containing clay clusters without the labels of the clusters' number, size, and texture were the output. The statistics and geometry of the reconstruction model were similar to the reference model. In addition, the Hoshen-Kopelman algorithm was used to label various connected unclassified clay clusters in the initial model and then the number and size of clay clusters were recorded. At the same time, the K -means clustering algorithm was applied to divide the labeled, large connecting clusters into smaller clusters on the basis of difference in the clusters' characteristics. According to the clay minerals' characteristics, such as types, textures, and distributions, the digital core containing clay minerals was reconstructed by means of the clustering algorithm and the clay clusters' structure judgment. The distributions and textures of the clay minerals of the digital core were reasonable. The clustering algorithm improved the digital core reconstruction and provided an alternative method for the simulation of different clay minerals in the digital cores.
Solar Backscatter UV (SBUV total ozone and profile algorithm
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P. K. Bhartia
2013-10-01
Full Text Available We describe the algorithm that has been applied to develop a 42 yr record of total ozone and ozone profiles from eight Solar Backscatter UV (SBUV instruments launched on NASA and NOAA satellites since April 1970. The Version 8 (V8 algorithm was released more than a decade ago and has been in use since then at NOAA to produce their operational ozone products. The current algorithm (V8.6 is basically the same as V8, except for updates to instrument calibration, incorporation of new ozone absorption cross-sections, and new ozone and cloud height climatologies. Since the V8 algorithm has been optimized for deriving monthly zonal mean (MZM anomalies for ozone assessment and model comparisons, our emphasis in this paper is primarily on characterizing the sources of errors that are relevant for such studies. When data are analyzed this way the effect of some errors, such as vertical smoothing of short-term variability, and noise due to clouds and aerosols diminish in importance, while the importance of others, such as errors due to vertical smoothing of the quasi-biennial oscillation (QBO and other periodic and aperiodic variations, become more important. With V8.6 zonal mean data we now provide smoothing kernels that can be used to compare anomalies in SBUV profile and partial ozone columns with models. In this paper we show how to use these kernels to compare SBUV data with Microwave Limb Sounder (MLS ozone profiles. These kernels are particularly useful for comparisons in the lower stratosphere where SBUV profiles have poor vertical resolution but partial column ozone values have high accuracy. We also provide our best estimate of the smoothing errors associated with SBUV MZM profiles. Since smoothing errors are the largest source of uncertainty in these profiles, they can be treated as error bars in deriving interannual variability and trends using SBUV data and for comparing with other measurements. In the V8 and V8.6 algorithms we derive total
Algorithms For Phylogeny Reconstruction In a New Mathematical Model
Lenzini, Gabriele; Marianelli, Silvia
1997-01-01
The evolutionary history of a set of species is represented by a tree called phylogenetic tree or phylogeny. Its structure depends on precise biological assumptions about the evolution of species. Problems related to phylogeny reconstruction (i.e., finding a tree representation of information
Miéville, Frédéric A.; Bolard, Gregory; Benkreira, Mohamed; Ayestaran, Paul; Gudinchet, François; Bochud, François; Verdun, Francis R.
2011-03-01
The noise power spectrum (NPS) is the reference metric for understanding the noise content in computed tomography (CT) images. To evaluate the noise properties of clinical multidetector (MDCT) scanners, local 2D and 3D NPSs were computed for different acquisition reconstruction parameters. A 64- and a 128-MDCT scanners were employed. Measurements were performed on a water phantom in axial and helical acquisition modes. CT dose index was identical for both installations. Influence of parameters such as the pitch, the reconstruction filter (soft, standard and bone) and the reconstruction algorithm (filtered-back projection (FBP), adaptive statistical iterative reconstruction (ASIR)) were investigated. Images were also reconstructed in the coronal plane using a reformat process. Then 2D and 3D NPS methods were computed. In axial acquisition mode, the 2D axial NPS showed an important magnitude variation as a function of the z-direction when measured at the phantom center. In helical mode, a directional dependency with lobular shape was observed while the magnitude of the NPS was kept constant. Important effects of the reconstruction filter, pitch and reconstruction algorithm were observed on 3D NPS results for both MDCTs. With ASIR, a reduction of the NPS magnitude and a shift of the NPS peak to the low frequency range were visible. 2D coronal NPS obtained from the reformat images was impacted by the interpolation when compared to 2D coronal NPS obtained from 3D measurements. The noise properties of volume measured in last generation MDCTs was studied using local 3D NPS metric. However, impact of the non-stationarity noise effect may need further investigations.
Volume reconstruction optimization for tomo-PIV algorithms applied to experimental data
Martins, Fabio J. W. A.; Foucaut, Jean-Marc; Thomas, Lionel; Azevedo, Luis F. A.; Stanislas, Michel
2015-08-01
Tomographic PIV is a three-component volumetric velocity measurement technique based on the tomographic reconstruction of a particle distribution imaged by multiple camera views. In essence, the performance and accuracy of this technique is highly dependent on the parametric adjustment and the reconstruction algorithm used. Although synthetic data have been widely employed to optimize experiments, the resulting reconstructed volumes might not have optimal quality. The purpose of the present study is to offer quality indicators that can be applied to data samples in order to improve the quality of velocity results obtained by the tomo-PIV technique. The methodology proposed can potentially lead to significantly reduction in the time required to optimize a tomo-PIV reconstruction, also leading to better quality velocity results. Tomo-PIV data provided by a six-camera turbulent boundary-layer experiment were used to optimize the reconstruction algorithms according to this methodology. Velocity statistics measurements obtained by optimized BIMART, SMART and MART algorithms were compared with hot-wire anemometer data and velocity measurement uncertainties were computed. Results indicated that BIMART and SMART algorithms produced reconstructed volumes with equivalent quality as the standard MART with the benefit of reduced computational time.
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Berrak Akşam
2016-06-01
Full Text Available Objective: Most of the malignant cutaneous carcinomas are seen in the nasal region. Reconstruction of nasal defects is challenging because of the unique anatomic properties and complex structure of this region. In this study, we present our algorithm for the nasal skin defects that occurred after malignant skin tumor excisions. Material and Methods: Patients whose nasal skin was reconstructed after malignant skin tumor excision were included in the study. These patients were evaluated by their age, gender, comorbities, tumor location, tumor size, reconstruction type, histopathological diagnosis, and tumor recurrence. Results: A total of 130 patients (70 female, 60 male were evaluated. The average age of the patients was 67.8 years. Tumors were located mostly at the dorsum, alar region, and tip of the nose. When reconstruction methods were evaluated, primary closure was preferred in 14.6% patients, full thickness skin grafts were used in 25.3% patients, and reconstruction with flaps were the choice in 60% patients. Different flaps were used according to the subunits. Mostly, dorsal nasal flaps, bilobed flaps, nasolabial flaps, and forehead flaps were used. Conclusion: The defect-only reconstruction principle was accepted in this study. Previously described subunits, such as the dorsum, tip, alar region, lateral wall, columella, and soft triangles, of the nose were further divided into subregions by their anatomical relations. An algorithm was planned with these sub regions. In nasal skin reconstruction, this algorithm helps in selection the methods for the best results and minimize the complications.
Spectral CT metal artifact reduction with an optimization-based reconstruction algorithm
Gilat Schmidt, Taly; Barber, Rina F.; Sidky, Emil Y.
2017-03-01
Metal objects cause artifacts in computed tomography (CT) images. This work investigated the feasibility of a spectral CT method to reduce metal artifacts. Spectral CT acquisition combined with optimization-based reconstruction is proposed to reduce artifacts by modeling the physical effects that cause metal artifacts and by providing the flexibility to selectively remove corrupted spectral measurements in the spectral-sinogram space. The proposed Constrained `One-Step' Spectral CT Image Reconstruction (cOSSCIR) algorithm directly estimates the basis material maps while enforcing convex constraints. The incorporation of constraints on the reconstructed basis material maps is expected to mitigate undersampling effects that occur when corrupted data is excluded from reconstruction. The feasibility of the cOSSCIR algorithm to reduce metal artifacts was investigated through simulations of a pelvis phantom. The cOSSCIR algorithm was investigated with and without the use of a third basis material representing metal. The effects of excluding data corrupted by metal were also investigated. The results demonstrated that the proposed cOSSCIR algorithm reduced metal artifacts and improved CT number accuracy. For example, CT number error in a bright shading artifact region was reduced from 403 HU in the reference filtered backprojection reconstruction to 33 HU using the proposed algorithm in simulation. In the dark shading regions, the error was reduced from 1141 HU to 25 HU. Of the investigated approaches, decomposing the data into three basis material maps and excluding the corrupted data demonstrated the greatest reduction in metal artifacts.
Transverse beam profile reconstruction using synchrotron radiation interferometry
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L. Torino
2016-12-01
Full Text Available Transverse beam size measurements in new generation of synchrotron light sources is a challenging task due to their characteristic small beam emittances and low couplings. Since the late 1990s, synchrotron radiation interferometry (SRI has been used in many accelerators to measure the beam size through the analysis of the spatial coherence of the synchrotron light. However, the standard SRI using a double-aperture system provides the beam size projection in a given direction. For this reason, the beam shape is not fully characterized because information about possible transverse beam tilts is not determined. In this report, we describe a technique to fully reconstruct the transverse beam profile based on a rotating double-pinhole mask, together with experimental results obtained at ALBA under different beam couplings. We also discuss how this method allows us to infer ultrasmall beam sizes in case of limitations of the standard SRI.
MART-type CT algorithms for the reconstruction of multidirectional interferometric data
Verhoeven, Dean D.
1992-01-01
There has been much recent interest in the application of optical tomography to the study of transport phenomena and chemical reactions in transparent fluid flows. An example is the use of multidirectional holographic interferometry and computed tomography for the study of crystal growth from solution under microgravity conditions. A critical part of any such measurement system is the computed tomography program used to convert the measured interferometric data to refractive index distributions in the object under study. Several of the most promising CT algorithms for this application are presented and compared here. Because of the practical difficulty of making multidirectional interferometric measurements, these measurements generally provide only limited amounts of data. Recent studies have indicated that of the several classes of reconstruction algorithms applicable in the limited-data situation, those based on the Multiplicative Algebraic Reconstruction Technique (MART) are the fastest, most flexible, and most accurate. Several MART-type algorithms have been proposed in the literature. In this paper we compare the performance of state-of-the-art implementations of four such algorithms under conditions of interest to those reconstructing multidirectional interferometric data. The algorithms are tested using numerically-generated data from two phantom objects, with two levels of added noise and with two different imaging geometries. A reconstruction of real data from a multidirectional holographic interferometer using the best of the algorithms is shown.
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Choo, Ji Yung [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Korea University Ansan Hospital, Ansan-si, Department of Radiology, Gyeonggi-do (Korea, Republic of); Goo, Jin Mo; Park, Chang Min; Park, Sang Joon [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of); Seoul National University, Cancer Research Institute, Seoul (Korea, Republic of); Lee, Chang Hyun; Shim, Mi-Suk [Seoul National University Medical Research Center, Department of Radiology, Seoul National University College of Medicine, and Institute of Radiation Medicine, Seoul (Korea, Republic of)
2014-04-15
To evaluate filtered back projection (FBP) and two iterative reconstruction (IR) algorithms and their effects on the quantitative analysis of lung parenchyma and airway measurements on computed tomography (CT) images. Low-dose chest CT obtained in 281 adult patients were reconstructed using three algorithms: FBP, adaptive statistical IR (ASIR) and model-based IR (MBIR). Measurements of each dataset were compared: total lung volume, emphysema index (EI), airway measurements of the lumen and wall area as well as average wall thickness. Accuracy of airway measurements of each algorithm was also evaluated using an airway phantom. EI using a threshold of -950 HU was significantly different among the three algorithms in decreasing order of FBP (2.30 %), ASIR (1.49 %) and MBIR (1.20 %) (P < 0.01). Wall thickness was also significantly different among the three algorithms with FBP (2.09 mm) demonstrating thicker walls than ASIR (2.00 mm) and MBIR (1.88 mm) (P < 0.01). Airway phantom analysis revealed that MBIR showed the most accurate value for airway measurements. The three algorithms presented different EIs and wall thicknesses, decreasing in the order of FBP, ASIR and MBIR. Thus, care should be taken in selecting the appropriate IR algorithm on quantitative analysis of the lung. (orig.)
A stand-alone track reconstruction algorithm for the scintillating fibre tracker at the LHCb upgrade
Quagliani, Renato
2017-01-01
The LHCb upgrade detector project foresees the presence of a scintillating fiber tracker (SciFi) to be used during the LHC Run III, starting in 2020. The instantaneous luminosity will be increased up to $2\\times10^{33}$, five times larger than in Run II and a full software event reconstruction will be performed at the full bunch crossing rate by the trigger. The new running conditions, and the tighter timing constraints in the software trigger, represent a big challenge for track reconstruction. This poster presents the design and performance of a novel algorithm that has been developed to reconstruct track segments using solely hits from the SciFi. This algorithm is crucial for the reconstruction of tracks originating from long-lived particles such as $K_{S}^{0}$ and $\\Lambda$ and allows to greatly enhance the physics potential and capabilities of the LHCb upgrade when compared to its previous implementation.
A robust jet reconstruction algorithm for high-energy lepton colliders
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M. Boronat
2015-11-01
Full Text Available We propose a new sequential jet reconstruction algorithm for future lepton colliders at the energy frontier. The Valencia algorithm combines the natural distance criterion for lepton colliders with the greater robustness against backgrounds of algorithms adapted to hadron colliders. Results on a detailed Monte Carlo simulation of tt¯ and ZZ production at future linear e+e− colliders (ILC and CLIC with a realistic level of background overlaid, show that it achieves better performance in the presence of background than the classical algorithms used at previous e+e− colliders.
Puri, Akshat; The ATLAS collaboration
2017-01-01
ATLAS uses a jet reconstruction algorithm in heavy ion collisions that takes as input calorimeter towers of size $0.1 \\times \\pi/32$ in $\\Delta\\eta \\times \\Delta\\phi$ and iteratively determines the underlying event background. This algorithm, which is different from the standard jet reconstruction used in ATLAS, is also used in the proton-proton collisions used as reference data for the Pb+Pb and p+Pb. This poster provides details of the heavy ion jet reconstruction algorithm and its performance in pp collisions. The calibration procedure is described in detail and cross checks using photon- jet balance are shown. The uncertainties on the jet energy scale and the jet energy resolution are described.
Application aspects of advanced antenna diagnostics with the 3D reconstruction algorithm
DEFF Research Database (Denmark)
Cappellin, Cecilia; Pivnenko, Sergey
2015-01-01
This paper focuses on two important applications of the 3D reconstruction algorithm of the commercial software DIATOOL for antenna diagnostics. The first one is the accurate and detailed identification of array malfunctioning, thanks to the available enhanced spatial resolution of the reconstructed...... fields and currents. The second one is the filtering of the scattering from support structures and feed network leakage. Representative experimental results are presented and guidelines on the recommended measurement parameters for obtaining the best diagnostics results are provided....
Mariano-Goulart, D; Fourcade, M; Bernon, J L; Rossi, M; Zanca, M
2003-01-01
Thanks to an experimental study based on simulated and physical phantoms, the propagation of the stochastic noise in slices reconstructed using the conjugate gradient algorithm has been analysed versus iterations. After a first increase corresponding to the reconstruction of the signal, the noise stabilises before increasing linearly with iterations. The level of the plateau as well as the slope of the subsequent linear increase depends on the noise in the projection data.
Denewer, Adel; Khater, Ashraf; Hafez, Mohamed T; Hussein, Osama; Roshdy, Sameh; Shahatto, Fayez; Elnahas, Waleed; Kotb, Sherif; Mowafy, Khaled
2014-01-01
Background The aim of this study is to define an algorithm for the choice of reconstructive method for defects after laryngo-pharyngo-esophagectomy for hypopharyngeal carcinoma. Methods One hundred and forty two cases of hypopharyngeal carcinoma were included and operated on by either partial pharyngectomy, total pharyngectomy or esophagectomy. The reconstructive method was tailored according to the resected segment. Results Pectoralis flap was used in 48 cases, free jejunal flap in 28 cases,...
Patient-centred decision making in breast reconstruction utilising the delayed-immediate algorithm.
Ter Louw, Ryan P; Patel, Ketan M; Sosin, Michael; Weissler, Jason M; Nahabedian, Maurice Y
2014-04-01
Delayed-immediate reconstruction is an increasingly valuable algorithm for patients anticipating post-mastectomy radiation therapy. Despite the cosmetic and long-term advantages of autologous tissue repair, a subset of patients choose implant-based reconstruction after their initial preference for autologous reconstruction. A critical evaluation of patients who initially planned to undergo delayed-immediate reconstruction but later chose to continue with implant-based reconstruction has not been previously reported. A retrospective analysis of the senior author's (M.Y.N.) patients who initially intended to undergo delayed-immediate autologous breast reconstruction following mastectomy and chose to abandon autologous reconstruction in favour of prosthetic reconstruction was completed from 2005 to 2011. Seven patients (10 breasts) met inclusion criteria. The mean patient age and body mass index were 50.2 years and 32.1 kg m(-2), respectively. Expansion required an average of 4.4 office visits to achieve adequate expansion volume, mean 483 ml (240-600 ml). The mean time from expander placement to definitive reconstruction was 14.6 months. Mean follow-up time was 20.4 months. Complications included infection (1/7), incisional dehiscence (1/7) and capsular contracture (2/7), and late revision surgery was performed in two patients. Successful reconstruction was achieved in 100% of patients (7/7) with a patient-reported satisfaction of 100%. Patient motivations for changing the reconstructive algorithm included a faster post-operative recovery in four patients (4/7) and potential donor-site morbidity in three patients (3/7). Depression or cancer-related fatigue symptoms were self-reported in 4/7. Avoiding donor-site morbidity and a simpler recovery are the main factors that influence patients to change their desire for autologous reconstruction to an implant-based reconstruction. Cancer-related fatigue and depression are prevalent in this population and may be implicated
Chen, Buxin; Zhang, Zheng; Sidky, Emil Y.; Xia, Dan; Pan, Xiaochuan
2017-11-01
Optimization-based algorithms for image reconstruction in multispectral (or photon-counting) computed tomography (MCT) remains a topic of active research. The challenge of optimization-based image reconstruction in MCT stems from the inherently non-linear data model that can lead to a non-convex optimization program for which no mathematically exact solver seems to exist for achieving globally optimal solutions. In this work, based upon a non-linear data model, we design a non-convex optimization program, derive its first-order-optimality conditions, and propose an algorithm to solve the program for image reconstruction in MCT. In addition to consideration of image reconstruction for the standard scan configuration, the emphasis is on investigating the algorithm’s potential for enabling non-standard scan configurations with no or minimum hardware modification to existing CT systems, which has potential practical implications for lowered hardware cost, enhanced scanning flexibility, and reduced imaging dose/time in MCT. Numerical studies are carried out for verification of the algorithm and its implementation, and for a preliminary demonstration and characterization of the algorithm in reconstructing images and in enabling non-standard configurations with varying scanning angular range and/or x-ray illumination coverage in MCT.
A stochastic local search algorithm for distance-based phylogeny reconstruction.
Tria, Francesca; Caglioti, Emanuele; Loreto, Vittorio; Pagnani, Andrea
2010-11-01
In many interesting cases, the reconstruction of a correct phylogeny is blurred by high mutation rates and/or horizontal transfer events. As a consequence, a divergence arises between the true evolutionary distances and the differences between pairs of taxa as inferred from available data, making the phylogenetic reconstruction a challenging problem. Mathematically, this divergence translates in a loss of additivity of the actual distances between taxa. In distance-based reconstruction methods, two properties of additive distances have been extensively exploited as antagonist criteria to drive phylogeny reconstruction: On the one hand, a local property of quartets, that is, sets of four taxa in a tree, the four-points condition; on the other hand, a recently proposed formula that allows to write the tree length as a function of the distances between taxa, Pauplin's formula. Here, we introduce a new reconstruction scheme that exploits in a unified framework both the four-points condition and the Pauplin's formula. We propose, in particular, a new general class of distance-based Stochastic Local Search algorithms, which reduces in a limit case to the minimization of Pauplin's length. When tested on artificially generated phylogenies, our Stochastic Big-Quartet Swapping algorithmic scheme significantly outperforms state-of-art distance-based algorithms in cases of deviation from additivity due to high rate of back mutations. A significant improvement is also observed with respect to the state-of-art algorithms in the case of high rate of horizontal transfer.
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Vaegler, Sven; Sauer, Otto [Wuerzburg Univ. (Germany). Dept. of Radiation Oncology; Stsepankou, Dzmitry; Hesser, Juergen [University Medical Center Mannheim, Mannheim (Germany). Dept. of Experimental Radiation Oncology
2015-07-01
The reduction of dose in cone beam computer tomography (CBCT) arises from the decrease of the tube current for each projection as well as from the reduction of the number of projections. In order to maintain good image quality, sophisticated image reconstruction techniques are required. The Prior Image Constrained Compressed Sensing (PICCS) incorporates prior images into the reconstruction algorithm and outperforms the widespread used Feldkamp-Davis-Kress-algorithm (FDK) when the number of projections is reduced. However, prior images that contain major variations are not appropriately considered so far in PICCS. We therefore propose the partial-PICCS (pPICCS) algorithm. This framework is a problem-specific extension of PICCS and enables the incorporation of the reliability of the prior images additionally. We assumed that the prior images are composed of areas with large and small deviations. Accordingly, a weighting matrix considered the assigned areas in the objective function. We applied our algorithm to the problem of image reconstruction from few views by simulations with a computer phantom as well as on clinical CBCT projections from a head-and-neck case. All prior images contained large local variations. The reconstructed images were compared to the reconstruction results by the FDK-algorithm, by Compressed Sensing (CS) and by PICCS. To show the gain of image quality we compared image details with the reference image and used quantitative metrics (root-mean-square error (RMSE), contrast-to-noise-ratio (CNR)). The pPICCS reconstruction framework yield images with substantially improved quality even when the number of projections was very small. The images contained less streaking, blurring and inaccurately reconstructed structures compared to the images reconstructed by FDK, CS and conventional PICCS. The increased image quality is also reflected in large RMSE differences. We proposed a modification of the original PICCS algorithm. The pPICCS algorithm
Cosmic web reconstruction through density ridges: method and algorithm
Chen, Yen-Chi; Ho, Shirley; Freeman, Peter E.; Genovese, Christopher R.; Wasserman, Larry
2015-11-01
The detection and characterization of filamentary structures in the cosmic web allows cosmologists to constrain parameters that dictate the evolution of the Universe. While many filament estimators have been proposed, they generally lack estimates of uncertainty, reducing their inferential power. In this paper, we demonstrate how one may apply the subspace constrained mean shift (SCMS) algorithm (Ozertem & Erdogmus 2011; Genovese et al. 2014) to uncover filamentary structure in galaxy data. The SCMS algorithm is a gradient ascent method that models filaments as density ridges, one-dimensional smooth curves that trace high-density regions within the point cloud. We also demonstrate how augmenting the SCMS algorithm with bootstrap-based methods of uncertainty estimation allows one to place uncertainty bands around putative filaments. We apply the SCMS first to the data set generated from the Voronoi model. The density ridges show strong agreement with the filaments from Voronoi method. We then apply the SCMS method data sets sampled from a P3M N-body simulation, with galaxy number densities consistent with SDSS and WFIRST-AFTA, and to LOWZ and CMASS data from the Baryon Oscillation Spectroscopic Survey (BOSS). To further assess the efficacy of SCMS, we compare the relative locations of BOSS filaments with galaxy clusters in the redMaPPer catalogue, and find that redMaPPer clusters are significantly closer (with p-values filaments than to randomly selected galaxies.
Ogawa, Takahiro; Haseyama, Miki
2013-03-01
A missing texture reconstruction method based on an error reduction (ER) algorithm, including a novel estimation scheme of Fourier transform magnitudes is presented in this brief. In our method, Fourier transform magnitude is estimated for a target patch including missing areas, and the missing intensities are estimated by retrieving its phase based on the ER algorithm. Specifically, by monitoring errors converged in the ER algorithm, known patches whose Fourier transform magnitudes are similar to that of the target patch are selected from the target image. In the second approach, the Fourier transform magnitude of the target patch is estimated from those of the selected known patches and their corresponding errors. Consequently, by using the ER algorithm, we can estimate both the Fourier transform magnitudes and phases to reconstruct the missing areas.
Performance Comparison of Reconstruction Algorithms in Discrete Blind Multi-Coset Sampling
DEFF Research Database (Denmark)
Grigoryan, Ruben; Arildsen, Thomas; Tandur, Deepaknath
2012-01-01
. The performance of the existing compressed sensing reconstruction algorithms have not been investigated yet for the discrete multi-coset sampling. We compare the following algorithms – orthogonal matching pursuit, multiple signal classification, subspace-augmented multiple signal classification, focal under......This paper investigates the performance of different reconstruction algorithms in discrete blind multi-coset sampling. Multi-coset scheme is a promising compressed sensing architecture that can replace traditional Nyquist-rate sampling in the applications with multi-band frequency sparse signals......-determined system solver and basis pursuit denoising. The comparison is performed via numerical simulations for different sampling conditions. According to the simulations, focal under-determined system solver outperforms all other algorithms for signals with low signal-to-noise ratio. In other cases, the multiple...
Energy Technology Data Exchange (ETDEWEB)
Jimenez, Edward S. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Orr, Laurel J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Thompson, Kyle R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
2013-09-01
The goal of this work is to develop a fast computed tomography (CT) reconstruction algorithm based on graphics processing units (GPU) that achieves significant improvement over traditional central processing unit (CPU) based implementations. The main challenge in developing a CT algorithm that is capable of handling very large datasets is parallelizing the algorithm in such a way that data transfer does not hinder performance of the reconstruction algorithm. General Purpose Graphics Processing (GPGPU) is a new technology that the Science and Technology (S&T) community is starting to adopt in many fields where CPU-based computing is the norm. GPGPU programming requires a new approach to algorithm development that utilizes massively multi-threaded environments. Multi-threaded algorithms in general are difficult to optimize since performance bottlenecks occur that are non-existent in single-threaded algorithms such as memory latencies. If an efficient GPU-based CT reconstruction algorithm can be developed; computational times could be improved by a factor of 20. Additionally, cost benefits will be realized as commodity graphics hardware could potentially replace expensive supercomputers and high-end workstations. This project will take advantage of the CUDA programming environment and attempt to parallelize the task in such a way that multiple slices of the reconstruction volume are computed simultaneously. This work will also take advantage of the GPU memory by utilizing asynchronous memory transfers, GPU texture memory, and (when possible) pinned host memory so that the memory transfer bottleneck inherent to GPGPU is amortized. Additionally, this work will take advantage of GPU-specific hardware (i.e. fast texture memory, pixel-pipelines, hardware interpolators, and varying memory hierarchy) that will allow for additional performance improvements.
Vlachopoulos, Lazaros; Székely, Gábor; Gerber, Christian; Fürnstahl, Philipp
2018-01-01
The optimal surgical treatment of complex fractures of the proximal humerus is controversial. It is proven that best results are obtained if an anatomical reduction of the fragments is achieved and, therefore, computer-assisted methods have been proposed for the reconstruction of the fractures. However, complex fractures of the proximal humerus are commonly accompanied with a relevant displacement of the fragments and, therefore, algorithms relying on the initial position of the fragments might fail. The state-of-the-art algorithm for complex fractures of the proximal humerus requires the acquisition of a CT scan of the (healthy) contralateral anatomy as a reconstruction template to address the displacement of the fragments. Pose-invariant fracture line based reconstruction algorithms have been applied successful for reassembling broken vessels in archaeology. Nevertheless, the extraction of the fracture lines and the necessary computation of their curvature are susceptible to noise and make the application of previous approaches difficult or even impossible for bone fractures close to the joints, where the cortical layer is thin. We present a novel scale-space representation of the curvature, permitting to calculate the correct alignment between bone fragments solely based on corresponding regions of the fracture lines. The fractures of the proximal humerus are automatically reconstructed based on iterative pairwise reduction of the fragments. The validation of the presented method was performed on twelve clinical cases, surgically treated after complex proximal humeral fracture, and by cadaver experiments. The accuracy of our approach was compared to the state-of-the-art algorithm for complex fractures of the proximal humerus. All reconstructions of the clinical cases resulted in an accurate approximation of the pre-traumatic anatomy. The accuracy of the reconstructed cadaver cases outperformed the current state-of-the-art algorithm. Copyright © 2017 Elsevier B
Feng, Yanqiu; Song, Yanli; Wang, Cong; Xin, Xuegang; Feng, Qianjin; Chen, Wufan
2013-10-01
To develop and test a new algorithm for fast direct Fourier transform (DrFT) reconstruction of MR data on non-Cartesian trajectories composed of lines with equally spaced points. The DrFT, which is normally used as a reference in evaluating the accuracy of other reconstruction methods, can reconstruct images directly from non-Cartesian MR data without interpolation. However, DrFT reconstruction involves substantially intensive computation, which makes the DrFT impractical for clinical routine applications. In this article, the Chirp transform algorithm was introduced to accelerate the DrFT reconstruction of radial and Periodically Rotated Overlapping ParallEL Lines with Enhanced Reconstruction (PROPELLER) MRI data located on the trajectories that are composed of lines with equally spaced points. The performance of the proposed Chirp transform algorithm-DrFT algorithm was evaluated by using simulation and in vivo MRI data. After implementing the algorithm on a graphics processing unit, the proposed Chirp transform algorithm-DrFT algorithm achieved an acceleration of approximately one order of magnitude, and the speed-up factor was further increased to approximately three orders of magnitude compared with the traditional single-thread DrFT reconstruction. Implementation the Chirp transform algorithm-DrFT algorithm on the graphics processing unit can efficiently calculate the DrFT reconstruction of the radial and PROPELLER MRI data. Copyright © 2012 Wiley Periodicals, Inc.
Directory of Open Access Journals (Sweden)
Chae Young Lee
Full Text Available The purposes of this study were to optimize a proton computed tomography system (pCT for proton range verification and to confirm the pCT image reconstruction algorithm based on projection images generated with optimized parameters. For this purpose, we developed a new pCT scanner using the Geometry and Tracking (GEANT 4.9.6 simulation toolkit. GEANT4 simulations were performed to optimize the geometric parameters representing the detector thickness and the distance between the detectors for pCT. The system consisted of four silicon strip detectors for particle tracking and a calorimeter to measure the residual energies of the individual protons. The optimized pCT system design was then adjusted to ensure that the solution to a CS-based convex optimization problem would converge to yield the desired pCT images after a reasonable number of iterative corrections. In particular, we used a total variation-based formulation that has been useful in exploiting prior knowledge about the minimal variations of proton attenuation characteristics in the human body. Examinations performed using our CS algorithm showed that high-quality pCT images could be reconstructed using sets of 72 projections within 20 iterations and without any streaks or noise, which can be caused by under-sampling and proton starvation. Moreover, the images yielded by this CS algorithm were found to be of higher quality than those obtained using other reconstruction algorithms. The optimized pCT scanner system demonstrated the potential to perform high-quality pCT during on-line image-guided proton therapy, without increasing the imaging dose, by applying our CS based proton CT reconstruction algorithm. Further, we make our optimized detector system and CS-based proton CT reconstruction algorithm potentially useful in on-line proton therapy.
Optimizing SRF Gun Cavity Profiles in a Genetic Algorithm Framework
Energy Technology Data Exchange (ETDEWEB)
Alicia Hofler, Pavel Evtushenko, Frank Marhauser
2009-09-01
Automation of DC photoinjector designs using a genetic algorithm (GA) based optimization is an accepted practice in accelerator physics. Allowing the gun cavity field profile shape to be varied can extend the utility of this optimization methodology to superconducting and normal conducting radio frequency (SRF/RF) gun based injectors. Finding optimal field and cavity geometry configurations can provide guidance for cavity design choices and verify existing designs. We have considered two approaches for varying the electric field profile. The first is to determine the optimal field profile shape that should be used independent of the cavity geometry, and the other is to vary the geometry of the gun cavity structure to produce an optimal field profile. The first method can provide a theoretical optimal and can illuminate where possible gains can be made in field shaping. The second method can produce more realistically achievable designs that can be compared to existing designs. In this paper, we discuss the design and implementation for these two methods for generating field profiles for SRF/RF guns in a GA based injector optimization scheme and provide preliminary results.
Alpuche Aviles, Jorge E; Pistorius, Stephen; Gordon, Richard; Elbakri, Idris A
2011-01-01
This work presents a first generation incoherent scatter CT (ISCT) hybrid (analytic-iterative) reconstruction algorithm for accurate ρ{e}imaging of objects with clinically relevant sizes. The algorithm reconstructs quantitative images of ρ{e} within a few iterations, avoiding the challenges of optimization based reconstruction algorithms while addressing the limitations of current analytical algorithms. A 4π detector is conceptualized in order to address the issue of directional dependency and is then replaced with a ring of detectors which detect a constant fraction of the scattered photons. The ISCT algorithm corrects for the attenuation of photons using a limited number of iterations and filtered back projection (FBP) for image reconstruction. This results in a hybrid reconstruction algorithm that was tested with sinograms generated by Monte Carlo (MC) and analytical (AN) simulations. Results show that the ISCT algorithm is weakly dependent on the ρ{e} initial estimate. Simulation results show that the proposed algorithm reconstruct ρ{e} images with a mean error of -1% ± 3% for the AN model and from -6% to -8% for the MC model. Finally, the algorithm is capable of reconstructing qualitatively good images even in the presence of multiple scatter. The proposed algorithm would be suitable for in-vivo medical imaging as long as practical limitations can be addressed. © 2011 – IOS Press and the authors. All rights reserved
Lee, Dong-Hoon; Hong, Cheol-Pyo; Lee, Man-Woo; Han, Bong-Soo
2013-09-01
Phase-contrast magnetic resonance angiography (PC MRA) is an excellent technique for visualization of venous vessels. However, the scan time of PC MRA is long compared with there of other MRA techniques. Recently, the potential of compressed sensing (CS) reconstruction to reduce the scan time in MR image acquisition using a sparse sampling dataset has become an active field of study. In this study, we propose a combination method to apply the CS reconstruction method to 2D PC MRA. This work was performed to enable faster 2D PC MRA imaging acquisition and to demonstrate its feasibility. We used a 0.32 T MR imaging (MRI) system and a total variation (TV)-based CS reconstruction algorithm. To validate the usefulness of our proposed reconstruction method, we used visual assessment for reconstructed images, and we measured the quantitative information for sampling rates from 12.5 to 75.0%. Based on our results, when the sampling ratio is increased, images reconstructed with the CS method have a similar level of image quality to fully sampled reconstruction images. The signal to noise ratio (SNR) and the contrast-to-noise ratio (CNR) were also closer to the reference values when the sampling ratio was increased. We confirmed the feasibility of 2D PC MRA with the CS reconstruction method. Our results provide evidence that this method can improve the time resolution of 2D PC MRA.
Near-infrared optical imaging of human brain based on the semi-3D reconstruction algorithm
Liu, Ming; Meng, Wei; Qin, Zhuanping; Zhou, Xiaoqing; Zhao, Huijuan; Gao, Feng
2013-03-01
In the non-invasive brain imaging with near-infrared light, precise head model is of great significance to the forward model and the image reconstruction. To deal with the individual difference of human head tissues and the problem of the irregular curvature, in this paper, we extracted head structure with Mimics software from the MRI image of a volunteer. This scheme makes it possible to assign the optical parameters to every layer of the head tissues reasonably and solve the diffusion equation with the finite-element analysis. During the solution of the inverse problem, a semi-3D reconstruction algorithm is adopted to trade off the computation cost and accuracy between the full 3-D and the 2-D reconstructions. In this scheme, the changes in the optical properties of the inclusions are assumed either axially invariable or confined to the imaging plane, while the 3-D nature of the photon migration is still retained. This therefore leads to a 2-D inverse issue with the matched 3-D forward model. Simulation results show that comparing to the 3-D reconstruction algorithm, the Semi-3D reconstruction algorithm cut 27% the calculation time consumption.
Willemink, M.J.; Takx, R.A.P.; Jong, P.A. de; Budde, R.P.; Bleys, R.L.; Das, M.; Wildberger, J.E.; Prokop, M.; Buls, N.; Mey, J. de; Leiner, T.; Schilham, A.M.
2014-01-01
We evaluated the effects of hybrid and model-based iterative reconstruction (IR) algorithms from different vendors at multiple radiation dose levels on image quality of chest phantom scans.A chest phantom was scanned on state-of-the-art computed tomography scanners from 4 vendors at 4 dose levels
Yazdani, Roghayeh; Fallah, Hamid R; Hajimahmoodzadeh, Morteza
2014-03-15
We numerically and experimentally demonstrate an iterative method to simultaneously reconstruct two unknown interfering wavefronts. A three-dimensional interference pattern is analyzed and then Zernike polynomials and the stochastic parallel gradient descent algorithm are used to expand and calculate wavefronts.
Gjersdal, Håvard
2008-01-01
The Gaussian sum filter is a track reconstruction algorithm specialized on dealing with the non-Gaussian radiative energy loss of electrons. This thesis deals with invariant mass determination from the non-Gaussian track estimates produced by the Gaussian sum filter.
DEFF Research Database (Denmark)
Angelsky, O. V.; Gorsky, M. P.; Hanson, Steen Grüner
2014-01-01
We propose an optical correlation algorithm illustrating a new general method for reconstructing the phase skeleton of complex optical fields from the measured two-dimensional intensity distribution. The core of the algorithm consists in locating the saddle points of the intensity distribution...... and connecting such points into nets by the lines of intensity gradient that are closely associated with the equi-phase lines of the field. This algorithm provides a new partial solution to the inverse problem in optics commonly referred to as the phase problem....
TV-constrained incremental algorithms for low-intensity CT image reconstruction
DEFF Research Database (Denmark)
Rose, Sean D.; Andersen, Martin S.; Sidky, Emil Y.
2015-01-01
Low-dose X-ray computed tomography (CT) has garnered much recent interest as it provides a method to lower patient dose and simultaneously reduce scan time. In non-medical applications the possibility of preventing sample damage makes low-dose CT desirable. Reconstruction in low-dose CT poses...... a significant challenge due to the high level of noise in the data. Here we propose an iterative method for reconstruction which minimizes the transmission Poisson likelihood subject to a total-variation constraint. This formulation accommodates efficient methods of parameter selection because the choice of TV...... constraint can be guided by an image reconstructed by filtered backprojection (FBP). We apply our algorithm to low-dose synchrotron X-ray CT data from the Advanced Photon Source (APS) at Argonne National Labs (ANL) to demonstrate its potential utility. We find that the algorithm provides a means of edge...
Directory of Open Access Journals (Sweden)
Bal Sanghera
2016-02-01
Full Text Available Objective: Application of distinct positron emission tomography (PET scan reconstruction algorithms can lead to statistically significant differences in measuring lesion functional properties. We looked at the influence of two-dimensional filtered back projection (2D FBP, two-dimensional ordered subset expectation maximization (2D OSEM, three-dimensional ordered subset expectation maximization (3D OSEM without 3D maximum a posteriori and with (3D OSEM MAP on lesion hypoxia tracer uptake using a pre-clinical PET scanner. Methods: Reconstructed images of a rodent tumor model bearing P22 carcinosarcoma injected with hypoxia tracer Copper- 64-Diacetyl-bis (N4-methylthiosemicarbazone (i.e. Cu-64 ATSM were analyzed at 10 minute intervals till 60 minute post injection. Lesion maximum standardized uptake values (SUVmax and SUVmax/background SUVmean (T/B were recorded and investigated after application of multiple algorithm and reconstruction parameters to assess their influence on Cu-64 ATSM measurements and associated trends over time. Results: SUVmax exhibited convergence for OSEM reconstructions while ANOVA results showed a significant difference in SUVmax or T/B between 2D FBP, 2D OSEM, 3D OSEM and 3D OSEM MAP reconstructions across all time frames. SUVmax and T/B were greatest in magnitude for 2D OSEM followed by 3D OSEM MAP, 3D OSEM and then 2D FBP at all time frames respectively. Similarly SUVmax and T/B standard deviations (SD were lowest for 2D OSEM in comparison with other algorithms. Conclusion: Significantly higher magnitude lesion SUVmax and T/B combined with lower SD were observed using 2D OSEM reconstruction in comparison with 2D FBP, 3D OSEM and 3D OSEM MAP algorithms at all time frames. Results are consistent with other published studies however more specimens are required for full validation.
Energy Technology Data Exchange (ETDEWEB)
Xu, Qiaofeng; Sawatzky, Alex; Anastasio, Mark A., E-mail: anastasio@wustl.edu [Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130 (United States); Yang, Deshan [Department of Radiation Oncology, School of Medicine, Washington University in St. Louis, St. Louis, Missouri 63110 (United States); Tan, Jun [Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, Texas 75390 (United States)
2016-04-15
Purpose: The development of iterative image reconstruction algorithms for cone-beam computed tomography (CBCT) remains an active and important research area. Even with hardware acceleration, the overwhelming majority of the available 3D iterative algorithms that implement nonsmooth regularizers remain computationally burdensome and have not been translated for routine use in time-sensitive applications such as image-guided radiation therapy (IGRT). In this work, two variants of the fast iterative shrinkage thresholding algorithm (FISTA) are proposed and investigated for accelerated iterative image reconstruction in CBCT. Methods: Algorithm acceleration was achieved by replacing the original gradient-descent step in the FISTAs by a subproblem that is solved by use of the ordered subset simultaneous algebraic reconstruction technique (OS-SART). Due to the preconditioning matrix adopted in the OS-SART method, two new weighted proximal problems were introduced and corresponding fast gradient projection-type algorithms were developed for solving them. We also provided efficient numerical implementations of the proposed algorithms that exploit the massive data parallelism of multiple graphics processing units. Results: The improved rates of convergence of the proposed algorithms were quantified in computer-simulation studies and by use of clinical projection data corresponding to an IGRT study. The accelerated FISTAs were shown to possess dramatically improved convergence properties as compared to the standard FISTAs. For example, the number of iterations to achieve a specified reconstruction error could be reduced by an order of magnitude. Volumetric images reconstructed from clinical data were produced in under 4 min. Conclusions: The FISTA achieves a quadratic convergence rate and can therefore potentially reduce the number of iterations required to produce an image of a specified image quality as compared to first-order methods. We have proposed and investigated
Implementation and evaluation of two helical CT reconstruction algorithms in CIVA
Banjak, H.; Costin, M.; Vienne, C.; Kaftandjian, V.
2016-02-01
The large majority of industrial CT systems reconstruct the 3D volume by using an acquisition on a circular trajec-tory. However, when inspecting long objects which are highly anisotropic, this scanning geometry creates severe artifacts in the reconstruction. For this reason, the use of an advanced CT scanning method like helical data acquisition is an efficient way to address this aspect known as the long-object problem. Recently, several analytically exact and quasi-exact inversion formulas for helical cone-beam reconstruction have been proposed. Among them, we identified two algorithms of interest for our case. These algorithms are exact and of filtered back-projection structure. In this work we implemented the filtered-backprojection (FBP) and backprojection-filtration (BPF) algorithms of Zou and Pan (2004). For performance evaluation, we present a numerical compari-son of the two selected algorithms with the helical FDK algorithm using both complete (noiseless and noisy) and truncated data generated by CIVA (the simulation platform for non-destructive testing techniques developed at CEA).
Extension of the modal wave-front reconstruction algorithm to non-uniform illumination.
Ma, Xiaoyu; Mu, Jie; Rao, ChangHui; Yang, Jinsheng; Rao, XueJun; Tian, Yu
2014-06-30
Attempts are made to eliminate the effects of non-uniform illumination on the precision of wave-front measurement. To achieve this, the relationship between the wave-front slope at a single sub-aperture and the distributions of the phase and light intensity of the wave-front were first analyzed to obtain the relevant theoretical formulae. Then, based on the principle of modal wave-front reconstruction, the influence of the light intensity distribution on the wave-front slope is introduced into the calculation of the reconstruction matrix. Experiments were conducted to prove that the corrected modal wave-front reconstruction algorithm improved the accuracy of wave-front reconstruction. Moreover, the correction is conducive to high-precision wave-front measurement using a Hartmann wave-front sensor in the presence of non-uniform illumination.
Zhang, Tiankui; Hu, Huasi; Jia, Qinggang; Zhang, Fengna; Chen, Da; Li, Zhenghong; Wu, Yuelei; Liu, Zhihua; Hu, Guang; Guo, Wei
2012-11-01
Monte-Carlo simulation of neutron coded imaging based on encoding aperture for Z-pinch of large field-of-view with 5 mm radius has been investigated, and then the coded image has been obtained. Reconstruction method of source image based on genetic algorithms (GA) has been established. "Residual watermark," which emerges unavoidably in reconstructed image, while the peak normalization is employed in GA fitness calculation because of its statistical fluctuation amplification, has been discovered and studied. Residual watermark is primarily related to the shape and other parameters of the encoding aperture cross section. The properties and essential causes of the residual watermark were analyzed, while the identification on equivalent radius of aperture was provided. By using the equivalent radius, the reconstruction can also be accomplished without knowing the point spread function (PSF) of actual aperture. The reconstruction result is close to that by using PSF of the actual aperture.
A Compressed Sensing-based Image Reconstruction Algorithm for Solar Flare X-Ray Observations
Felix, Simon; Bolzern, Roman; Battaglia, Marina
2017-11-01
One way of imaging X-ray emission from solar flares is to measure Fourier components of the spatial X-ray source distribution. We present a new compressed sensing-based algorithm named VIS_CS, which reconstructs the spatial distribution from such Fourier components. We demonstrate the application of the algorithm on synthetic and observed solar flare X-ray data from the Reuven Ramaty High Energy Solar Spectroscopic Imager satellite and compare its performance with existing algorithms. VIS_CS produces competitive results with accurate photometry and morphology, without requiring any algorithm- and X-ray-source-specific parameter tuning. Its robustness and performance make this algorithm ideally suited for the generation of quicklook images or large image cubes without user intervention, such as for imaging spectroscopy analysis.
Lohvithee, Manasavee; Biguri, Ander; Soleimani, Manuchehr
2017-12-01
There are a number of powerful total variation (TV) regularization methods that have great promise in limited data cone-beam CT reconstruction with an enhancement of image quality. These promising TV methods require careful selection of the image reconstruction parameters, for which there are no well-established criteria. This paper presents a comprehensive evaluation of parameter selection in a number of major TV-based reconstruction algorithms. An appropriate way of selecting the values for each individual parameter has been suggested. Finally, a new adaptive-weighted projection-controlled steepest descent (AwPCSD) algorithm is presented, which implements the edge-preserving function for CBCT reconstruction with limited data. The proposed algorithm shows significant robustness compared to three other existing algorithms: ASD-POCS, AwASD-POCS and PCSD. The proposed AwPCSD algorithm is able to preserve the edges of the reconstructed images better with fewer sensitive parameters to tune.
Dekker, Kurtis H; Battista, Jerry J; Jordan, Kevin J
2017-10-26
Iterative CT reconstruction algorithms are gaining popularity as GPU-based computation becomes more accessible. These algorithms are desirable in x-ray CT for their ability to achieve similar image quality at a fraction of the dose required for standard filtered backprojection reconstructions. In optical CT dosimetry, the noise reduction capability of such algorithms is similarly desirable because noise has a detrimental effect on the precision of dosimetric analysis, and can create misleading test results. In this study, we evaluate an iterative CT reconstruction algorithm for gel dosimetry, with special attention to the challenging dosimetry of small fields. An existing ordered subsets convex algorithm using total variation minimization regularization (OSC-TV) was implemented. Three datasets, which represent the extreme cases of gel dosimetry, were examined: a large, 15 cm diameter uniform phantom, a 1.35 cm diameter finger phantom, and a 15 cm gel dosimeter irradiated with 3x3, 2x2, 1x1 and 0.6x0.6 cm fields. These were scanned on an in-house scanning laser system, and reconstructed with both filtered backprojection and OSC-TV with a range of regularization constants. The contrast to artifact + noise ratio (CANR) and penumbra width measurements (80% to 20% and 95% to 5% distances) were used to compare reconstructions. Our results showed that OSC-TV can achieve 3-5x improvement in contrast to artifact + noise ratio compared to filtered backprojection, while preserving the shape of steep dose gradients. For very small objects (≤ 0.6 x 0.6 cm fields in a 16x16 cm field of view), the mean value in the center of the object can be suppressed if the regularization constant is improperly set, which must be avoided. Overall, the results indicate that OSC-TV is a suitable reconstruction algorithm for gel dosimetry, provided care is taken in setting the regularization parameter when reconstructing objects that are small compared to the scanner field of view. This article
A fast method to emulate an iterative POCS image reconstruction algorithm.
Zeng, Gengsheng L
2017-10-01
Iterative image reconstruction algorithms are commonly used to optimize an objective function, especially when the objective function is nonquadratic. Generally speaking, the iterative algorithms are computationally inefficient. This paper presents a fast algorithm that has one backprojection and no forward projection. This paper derives a new method to solve an optimization problem. The nonquadratic constraint, for example, an edge-preserving denoising constraint is implemented as a nonlinear filter. The algorithm is derived based on the POCS (projections onto projections onto convex sets) approach. A windowed FBP (filtered backprojection) algorithm enforces the data fidelity. An iterative procedure, divided into segments, enforces edge-enhancement denoising. Each segment performs nonlinear filtering. The derived iterative algorithm is computationally efficient. It contains only one backprojection and no forward projection. Low-dose CT data are used for algorithm feasibility studies. The nonlinearity is implemented as an edge-enhancing noise-smoothing filter. The patient studies results demonstrate its effectiveness in processing low-dose x ray CT data. This fast algorithm can be used to replace many iterative algorithms. © 2017 American Association of Physicists in Medicine.
Nemenman, Ilya; Escola, G Sean; Hlavacek, William S; Unkefer, Pat J; Unkefer, Clifford J; Wall, Michael E
2007-12-01
We investigate the ability of algorithms developed for reverse engineering of transcriptional regulatory networks to reconstruct metabolic networks from high-throughput metabolite profiling data. For benchmarking purposes, we generate synthetic metabolic profiles based on a well-established model for red blood cell metabolism. A variety of data sets are generated, accounting for different properties of real metabolic networks, such as experimental noise, metabolite correlations, and temporal dynamics. These data sets are made available online. We use ARACNE, a mainstream algorithm for reverse engineering of transcriptional regulatory networks from gene expression data, to predict metabolic interactions from these data sets. We find that the performance of ARACNE on metabolic data is comparable to that on gene expression data.
Directory of Open Access Journals (Sweden)
Peigang Ning
Full Text Available OBJECTIVE: This work aims to explore the effects of adaptive statistical iterative reconstruction (ASiR and model-based iterative reconstruction (MBIR algorithms in reducing computed tomography (CT radiation dosages in abdominal imaging. METHODS: CT scans on a standard male phantom were performed at different tube currents. Images at the different tube currents were reconstructed with the filtered back-projection (FBP, 50% ASiR and MBIR algorithms and compared. The CT value, image noise and contrast-to-noise ratios (CNRs of the reconstructed abdominal images were measured. Volumetric CT dose indexes (CTDIvol were recorded. RESULTS: At different tube currents, 50% ASiR and MBIR significantly reduced image noise and increased the CNR when compared with FBP. The minimal tube current values required by FBP, 50% ASiR, and MBIR to achieve acceptable image quality using this phantom were 200, 140, and 80 mA, respectively. At the identical image quality, 50% ASiR and MBIR reduced the radiation dose by 35.9% and 59.9% respectively when compared with FBP. CONCLUSIONS: Advanced iterative reconstruction techniques are able to reduce image noise and increase image CNRs. Compared with FBP, 50% ASiR and MBIR reduced radiation doses by 35.9% and 59.9%, respectively.
Ning, Peigang; Zhu, Shaocheng; Shi, Dapeng; Guo, Ying; Sun, Minghua
2014-01-01
Objective This work aims to explore the effects of adaptive statistical iterative reconstruction (ASiR) and model-based iterative reconstruction (MBIR) algorithms in reducing computed tomography (CT) radiation dosages in abdominal imaging. Methods CT scans on a standard male phantom were performed at different tube currents. Images at the different tube currents were reconstructed with the filtered back-projection (FBP), 50% ASiR and MBIR algorithms and compared. The CT value, image noise and contrast-to-noise ratios (CNRs) of the reconstructed abdominal images were measured. Volumetric CT dose indexes (CTDIvol) were recorded. Results At different tube currents, 50% ASiR and MBIR significantly reduced image noise and increased the CNR when compared with FBP. The minimal tube current values required by FBP, 50% ASiR, and MBIR to achieve acceptable image quality using this phantom were 200, 140, and 80 mA, respectively. At the identical image quality, 50% ASiR and MBIR reduced the radiation dose by 35.9% and 59.9% respectively when compared with FBP. Conclusions Advanced iterative reconstruction techniques are able to reduce image noise and increase image CNRs. Compared with FBP, 50% ASiR and MBIR reduced radiation doses by 35.9% and 59.9%, respectively. PMID:24664174
Lartillot, Nicolas; Rodrigue, Nicolas; Stubbs, Daniel; Richer, Jacques
2013-07-01
Modeling across site variation of the substitution process is increasingly recognized as important for obtaining more accurate phylogenetic reconstructions. Both finite and infinite mixture models have been proposed and have been shown to significantly improve on classical single-matrix models. Compared with their finite counterparts, infinite mixtures have a greater expressivity. However, they are computationally more challenging. This has resulted in practical compromises in the design of infinite mixture models. In particular, a fast but simplified version of a Dirichlet process model over equilibrium frequency profiles implemented in PhyloBayes has often been used in recent phylogenomics studies, while more refined model structures, more realistic and empirically more fit, have been practically out of reach. We introduce a message passing interface version of PhyloBayes, implementing the Dirichlet process mixture models as well as more classical empirical matrices and finite mixtures. The parallelization is made efficient thanks to the combination of two algorithmic strategies: a partial Gibbs sampling update of the tree topology and the use of a truncated stick-breaking representation for the Dirichlet process prior. The implementation shows close to linear gains in computational speed for up to 64 cores, thus allowing faster phylogenetic reconstruction under complex mixture models. PhyloBayes MPI is freely available from our website www.phylobayes.org.
Improved iterative image reconstruction algorithm for the exterior problem of computed tomography
Energy Technology Data Exchange (ETDEWEB)
Guo, Yumeng [Chongqing University, College of Mathematics and Statistics, Chongqing 401331 (China); Chongqing University, ICT Research Center, Key Laboratory of Optoelectronic Technology and System of the Education Ministry of China, Chongqing 400044 (China); Zeng, Li, E-mail: drlizeng@cqu.edu.cn [Chongqing University, College of Mathematics and Statistics, Chongqing 401331 (China); Chongqing University, ICT Research Center, Key Laboratory of Optoelectronic Technology and System of the Education Ministry of China, Chongqing 400044 (China)
2017-01-11
In industrial applications that are limited by the angle of a fan-beam and the length of a detector, the exterior problem of computed tomography (CT) uses only the projection data that correspond to the external annulus of the objects to reconstruct an image. Because the reconstructions are not affected by the projection data that correspond to the interior of the objects, the exterior problem is widely applied to detect cracks in the outer wall of large-sized objects, such as in-service pipelines. However, image reconstruction in the exterior problem is still a challenging problem due to truncated projection data and beam-hardening, both of which can lead to distortions and artifacts. Thus, developing an effective algorithm and adopting a scanning trajectory suited for the exterior problem may be valuable. In this study, an improved iterative algorithm that combines total variation minimization (TVM) with a region scalable fitting (RSF) model was developed for a unilateral off-centered scanning trajectory and can be utilized to inspect large-sized objects for defects. Experiments involving simulated phantoms and real projection data were conducted to validate the practicality of our algorithm. Furthermore, comparative experiments show that our algorithm outperforms others in suppressing the artifacts caused by truncated projection data and beam-hardening.
Goodenberger, Martin H; Wagner-Bartak, Nicolaus A; Gupta, Shiva; Liu, Xinming; Yap, Ramon Q; Sun, Jia; Tamm, Eric P; Jensen, Corey T
2017-08-12
The purpose of this study was to compare abdominopelvic computed tomography images reconstructed with adaptive statistical iterative reconstruction-V (ASIR-V) with model-based iterative reconstruction (Veo 3.0), ASIR, and filtered back projection (FBP). Abdominopelvic computed tomography scans for 36 patients (26 males and 10 females) were reconstructed using FBP, ASIR (80%), Veo 3.0, and ASIR-V (30%, 60%, 90%). Mean ± SD patient age was 32 ± 10 years with mean ± SD body mass index of 26.9 ± 4.4 kg/m. Images were reviewed by 2 independent readers in a blinded, randomized fashion. Hounsfield unit, noise, and contrast-to-noise ratio (CNR) values were calculated for each reconstruction algorithm for further comparison. Phantom evaluation of low-contrast detectability (LCD) and high-contrast resolution was performed. Adaptive statistical iterative reconstruction-V 30%, ASIR-V 60%, and ASIR 80% were generally superior qualitatively compared with ASIR-V 90%, Veo 3.0, and FBP (P V 90% showed superior LCD and had the highest CNR in the liver, aorta, and, pancreas, measuring 7.32 ± 3.22, 11.60 ± 4.25, and 4.60 ± 2.31, respectively, compared with the next best series of ASIR-V 60% with respective CNR values of 5.54 ± 2.39, 8.78 ± 3.15, and 3.49 ± 1.77 (P V 30% and ASIR-V 60% provided the best combination of qualitative and quantitative performance. Adaptive statistical iterative reconstruction 80% was equivalent qualitatively, but demonstrated inferior spatial resolution and LCD.
Wen, Debao; Liu, Sanzhi
2010-08-01
For the limitation of the conventional multiplicative algebraic reconstruction technique (MART), a constrained MART (CMART) is proposed in this paper. In the new tomographic algorithm, a popular two-dimensional multi-point finite difference approximation of the second order Laplacian operator is used to smooth the electron density field. The feasibility and superiority of the new method are demonstrated by using the numerical simulation experiment. Finally, the CMART is used to reconstruct the regional electron density field by using the actual GNSS data under geomagnetic quiet and disturbed days. The available ionosonde data from Beijing station further validates the superiority of the new method.
Clinical evaluation of a novel CT image reconstruction algorithm for direct dose calculations
Directory of Open Access Journals (Sweden)
Brent van der Heyden
2017-03-01
Full Text Available Background and purpose: Computed tomography (CT imaging is frequently used in radiation oncology to calculate radiation dose distributions. In order to calculate doses, the CT numbers must be converted into densities by an energy dependent conversion curve. A recently developed algorithm directly reconstructs CT projection data into relative electron densities which eliminates the use of separate conversion curves for different X-ray tube potentials. Our work evaluates this algorithm for various cancer sites and shows its applicability in a clinical workflow. Materials and methods: The Gammex phantom with tissue mimicking inserts was scanned to characterize the CT number to density conversion curves. In total, 33 patients with various cancer sites were scanned using multiple tube potentials. All CT acquisitions were reconstructed with the standard filtered back-projection (FBP and the new developed DirectDensityâ¢ (DD algorithm. The mean tumor doses and the volume percentage that receives more than 95% of the prescribed dose were calculated for the planning target volume. Relevant parameters for the organs at risk for each tumor site were also calculated. Results: The relative mean dose differences between the standard 120Â kVp FBP CT scan workflow and the DD CT scans (80, 100, 120 and 140Â kVp were in general less than 1% for the planned target volume and organs at risk. Conclusion: The energy independent DD algorithm allows for accurate dose calculations over a variety of body sites. This novel algorithm eliminates the tube potential specific calibration procedure and thereby simplifies the clinical radiotherapy workflow. Keywords: CT imaging, Image reconstruction, Dose calculations, Electron density reconstruction
Energy Technology Data Exchange (ETDEWEB)
Park, Yeonok; Cho, Heemoon; Je, Uikyu; Cho, Hyosung, E-mail: hscho1@yonsei.ac.kr; Park, Chulkyu; Lim, Hyunwoo; Kim, Kyuseok; Kim, Guna; Park, Soyoung; Woo, Taeho; Choi, Sungil
2015-12-21
In this work, we have developed a prototype digital breast tomosynthesis (DBT) system which mainly consists of an x-ray generator (28 kV{sub p}, 7 mA s), a CMOS-type flat-panel detector (70-μm pixel size, 230.5×339 mm{sup 2} active area), and a rotational arm to move the x-ray generator in an arc. We employed a compressed-sensing (CS)-based reconstruction algorithm, rather than a common filtered-backprojection (FBP) one, for more accurate DBT reconstruction. Here the CS is a state-of-the-art mathematical theory for solving the inverse problems, which exploits the sparsity of the image with substantially high accuracy. We evaluated the reconstruction quality in terms of the detectability, the contrast-to-noise ratio (CNR), and the slice-sensitive profile (SSP) by using the mammographic accreditation phantom (Model 015, CIRS Inc.) and compared it to the FBP-based quality. The CS-based algorithm yielded much better image quality, preserving superior image homogeneity, edge sharpening, and cross-plane resolution, compared to the FBP-based one. - Highlights: • A prototype digital breast tomosynthesis (DBT) system is developed. • Compressed-sensing (CS) based reconstruction framework is employed. • We reconstructed high-quality DBT images by using the proposed reconstruction framework.
Gomi, Tsutomu; Sakai, Rina; Goto, Masami; Hara, Hidetake; Watanabe, Yusuke; Umeda, Tokuo
2017-10-01
To investigate methods to reduce metal artifacts during digital tomosynthesis for arthroplasty, we evaluated five algorithms with and without metal artifact reduction (MAR)-processing tested under different radiation doses (0.54, 0.47, and 0.33mSv): adaptive steepest descent projection onto convex sets (ASD-POCS), simultaneous algebraic reconstruction technique total variation (SART-TV), filtered back projection (FBP), maximum likelihood expectation maximization (MLEM), and SART. The algorithms were assessed by determining the artifact index (AI) and artifact spread function (ASF) on a prosthesis phantom. The AI data were statistically analyzed by two-way analysis of variance. Without MAR-processing, the greatest degree of effectiveness of the MLEM algorithm for reducing prosthetic phantom-related metal artifacts was achieved by quantification using the AI (MLEM vs. ASD-POCS, SART-TV, SART, and FBP; all PTV, and SART algorithms for reducing prosthetic phantom-related metal artifacts was achieved by quantification using the AI (MLEM, ASD-POCS, SART-TV, and SART vs. FBP; all PTV, and SART algorithm with MAR-processing. In ASF, the effect of metal artifact reduction was always greater at reduced radiation doses, regardless of which reconstruction algorithm with and without MAR-processing was used. In this phantom study, the MLEM algorithm without MAR-processing and ASD-POCS, SART-TV, and SART algorithm with MAR-processing gave improved metal artifact reduction. Copyright © 2017 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.
Open-source algorithm for automatic choroid segmentation of OCT volume reconstructions
Mazzaferri, Javier; Beaton, Luke; Hounye, Gisèle; Sayah, Diane N.; Costantino, Santiago
2017-02-01
The use of optical coherence tomography (OCT) to study ocular diseases associated with choroidal physiology is sharply limited by the lack of available automated segmentation tools. Current research largely relies on hand-traced, single B-Scan segmentations because commercially available programs require high quality images, and the existing implementations are closed, scarce and not freely available. We developed and implemented a robust algorithm for segmenting and quantifying the choroidal layer from 3-dimensional OCT reconstructions. Here, we describe the algorithm, validate and benchmark the results, and provide an open-source implementation under the General Public License for any researcher to use (https://www.mathworks.com/matlabcentral/fileexchange/61275-choroidsegmentation).
Du, Yi; Yu, Gongyi; Xiang, Xincheng; Wang, Xiangang; De Deene, Yves
2017-05-01
Computational simulations are used to investigate the convergence of a hybrid iterative algorithm for optical CT reconstruction, i.e. the simultaneous algebraic reconstruction technique (SART) integrated with ordered subsets (OS) iteration and total variation (TV) minimization regularization, or SART+OS+TV for short. The influence of parameter selection to reach convergence, spatial dose gradient integrity, MTF and convergent speed are discussed. It’s shown that the results of SART+OS+TV algorithm converge to the true values without significant bias, and MTF and convergent speed are affected by different parameter sets used for iterative calculation. In conclusion, the performance of the SART+OS+TV depends on parameter selection, which also implies that careful parameter tuning work is required and necessary for proper spatial performance and fast convergence.
Energy Technology Data Exchange (ETDEWEB)
Sonley, T.J. [Laboratory for Nuclear Science, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Department of Physics, Queen' s University, Kingston, Ontario, Canada K7L 3N6 (Canada); Abruzzio, R. [Laboratory for Nuclear Science, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Chan, Y.D.; Currat, C.A. [Institute for Nuclear and Particle Astrophysics and Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Duncan, F.A. [SNOLAB, Sudbury, ON, P3Y 1M3 (Canada); Department of Physics, Queen' s University, Kingston, Ontario, K7L 3N6 (Canada); Farine, J. [Department of Physics and Astronomy, Laurentian University, Sudbury, Ontario, P3E 2C6 (Canada); Ford, R.J. [SNOLAB, Sudbury, ON, P3Y 1M3 (Canada); Formaggio, J.A., E-mail: josephf@mit.edu [Laboratory for Nuclear Science, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Center for Experimental Nuclear Physics and Astrophysics, and Department of Physics, University of Washington, Seattle, WA 98195 (United States); Gagnon, N. [Institute for Nuclear and Particle Astrophysics and Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Department of Physics, Queen' s University, Kingston, Ontario, K7L 3N6 (Canada); Center for Experimental Nuclear Physics and Astrophysics, and Department of Physics, University of Washington, Seattle, WA 98195 (United States); Los Alamos National Laboratory, Los Alamos, NM 87545 (United States); Hallin, A.L. [Department of Physics, Queen' s University, Kingston, Ontario, K7L 3N6 (Canada); Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2R3 (Canada)
2011-08-21
To help constrain the algorithms used in reconstructing high-energy muon events incident on the Sudbury Neutrino Observatory (SNO), a muon tracking system was installed. The system consisted of four planes of wire chambers, which were triggered by scintillator panels. The system was integrated with SNO's main data acquisition system and took data for a total of 95 live days. Using cosmic-ray events reconstructed in both the wire chambers and in SNO's water Cherenkov detector, the external muon tracking system was able to constrain the uncertainty on the muon direction to better than 0.6{sup o}. - Highlights: > This paper describes a novel technique for calibrating tracking algorithms. > The experimental accuracy achieved by this system was better than 1{sup o}. > The principle behind the technique can be used in future underground experiments.
Study on infrared image super-resolution reconstruction based on an improved POCS algorithm
Dai, Shaosheng; Cui, Junjie; Zhang, Dezhou; Liu, Qin; Zhang, Xiaoxiao
2017-04-01
Aiming at the disadvantages of the traditional projection onto convex sets of blurry edges and lack of image details, this paper proposes an improved projection onto convex sets (POCS) method to enhance the quality of image super-resolution reconstruction (SRR). In traditional POCS method, bilinear interpolation easily blurs the image. In order to improve the initial estimation of high-resolution image (HRI) during reconstruction of POCS algorithm, the initial estimation of HRI is obtained through iterative curvature-based interpolation (ICBI) instead of bilinear interpolation. Compared with the traditional POCS algorithm, the experimental results in subjective evaluation and objective evaluation demonstrate the effectiveness of the proposed method. The visual effect is improved significantly and image detail information is preserved better. Project supported by the National Natural Science Foundation of China (Nos. 61275099, 61671094) and the Natural Science Foundation of Chongqing Science and Technology Commission (No. CSTC2015JCYJA40032).
Energy Technology Data Exchange (ETDEWEB)
Solomon, Justin, E-mail: justin.solomon@duke.edu [Carl E. Ravin Advanced Imaging Laboratories, Department of Radiology, Duke University Medical Center, Durham, North Carolina 27705 (United States); Samei, Ehsan [Carl E. Ravin Advanced Imaging Laboratories, Department of Radiology, Duke University Medical Center, Durham, North Carolina 27705 and Departments of Biomedical Engineering and Electrical and Computer Engineering, Pratt School of Engineering, Duke University, Durham, North Carolina 27705 (United States)
2014-09-15
Purpose: Quantum noise properties of CT images are generally assessed using simple geometric phantoms with uniform backgrounds. Such phantoms may be inadequate when assessing nonlinear reconstruction or postprocessing algorithms. The purpose of this study was to design anatomically informed textured phantoms and use the phantoms to assess quantum noise properties across two clinically available reconstruction algorithms, filtered back projection (FBP) and sinogram affirmed iterative reconstruction (SAFIRE). Methods: Two phantoms were designed to represent lung and soft-tissue textures. The lung phantom included intricate vessel-like structures along with embedded nodules (spherical, lobulated, and spiculated). The soft tissue phantom was designed based on a three-dimensional clustered lumpy background with included low-contrast lesions (spherical and anthropomorphic). The phantoms were built using rapid prototyping (3D printing) technology and, along with a uniform phantom of similar size, were imaged on a Siemens SOMATOM Definition Flash CT scanner and reconstructed with FBP and SAFIRE. Fifty repeated acquisitions were acquired for each background type and noise was assessed by estimating pixel-value statistics, such as standard deviation (i.e., noise magnitude), autocorrelation, and noise power spectrum. Noise stationarity was also assessed by examining the spatial distribution of noise magnitude. The noise properties were compared across background types and between the two reconstruction algorithms. Results: In FBP and SAFIRE images, noise was globally nonstationary for all phantoms. In FBP images of all phantoms, and in SAFIRE images of the uniform phantom, noise appeared to be locally stationary (within a reasonably small region of interest). Noise was locally nonstationary in SAFIRE images of the textured phantoms with edge pixels showing higher noise magnitude compared to pixels in more homogenous regions. For pixels in uniform regions, noise magnitude was
Evaluation of a commercial Model Based Iterative reconstruction algorithm in computed tomography.
Paruccini, Nicoletta; Villa, Raffaele; Pasquali, Claudia; Spadavecchia, Chiara; Baglivi, Antonia; Crespi, Andrea
2017-09-01
Iterative reconstruction algorithms have been introduced in clinical practice to obtain dose reduction without compromising the diagnostic performance. To investigate the commercial Model Based IMR algorithm by means of patient dose and image quality, with standard Fourier and alternative metrics. A Catphan phantom, a commercial density phantom and a cylindrical water filled phantom were scanned both varying CTDIvol and reconstruction thickness. Images were then reconstructed with Filtered Back Projection and both statistical (iDose) and Model Based (IMR) Iterative reconstruction algorithms. Spatial resolution was evaluated with Modulation Transfer Function and Target Transfer Function. Noise reduction was investigated with Standard Deviation. Furthermore, its behaviour was analysed with 3D and 2D Noise Power Spectrum. Blur and Low Contrast Detectability were investigated. Patient dose indexes were collected and analysed. All results, related to image quality, have been compared to FBP standard reconstructions. Model Based IMR significantly improves Modulation Transfer Function with an increase between 12% and 64%. Target Transfer Function curves confirm this trend for high density objects, while Blur presents a sharpness reduction for low density details. Model Based IMR underlines a noise reduction between 44% and 66% and a variation in noise power spectrum behaviour. Low Contrast Detectability curves underline an averaged improvement of 35-45%; these results are compatible with an achievable reduction of 50% of CTDIvol. A dose reduction between 25% and 35% is confirmed by median values of CTDIvol. IMR produces an improvement in image quality and dose reduction. Copyright © 2017 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.
Yu, Liang; Antoni, Jerome; Leclere, Quentin; Jiang, Weikang
2017-11-01
Acoustical source reconstruction is a typical inverse problem, whose minimum frequency of reconstruction hinges on the size of the array and maximum frequency depends on the spacing distance between the microphones. For the sake of enlarging the frequency of reconstruction and reducing the cost of an acquisition system, Cyclic Projection (CP), a method of sequential measurements without reference, was recently investigated (JSV,2016,372:31-49). In this paper, the Propagation based Fast Iterative Shrinkage Thresholding Algorithm (Propagation-FISTA) is introduced, which improves CP in two aspects: (1) the number of acoustic sources is no longer needed and the only making assumption is that of a ;weakly sparse; eigenvalue spectrum; (2) the construction of the spatial basis is much easier and adaptive to practical scenarios of acoustical measurements benefiting from the introduction of propagation based spatial basis. The proposed Propagation-FISTA is first investigated with different simulations and experimental setups and is next illustrated with an industrial case.
Gagnon, Louis-Guillaume; ATLAS Collaboration
2017-10-01
ATLAS track reconstruction software is continuously evolving to match the demands from the increasing instantaneous luminosity of the LHC, as well as the increased center-of-mass energy. These conditions result in a higher abundance of events with dense track environments, such as the core of jets or boosted tau leptons undergoing three-prong decays. These environments are characterised by charged particle separations on the order of the ATLAS inner detector sensor dimensions and are created by the decay of boosted objects. Significant upgrades were made to the track reconstruction software to cope with the expected conditions during LHC Run 2. In particular, new algorithms targeting dense environments were developed. These changes lead to a substantial reduction of reconstruction time while at the same time improving physics performance. The employed methods are presented and physics performance studies are shown, including a measurement of the fraction of lost tracks in jets with high transverse momentum.
AUTHOR|(INSPIRE)INSPIRE-00441787; The ATLAS collaboration
2017-01-01
ATLAS track reconstruction software is continuously evolving to match the demands from the increasing instantaneous luminosity of the LHC, as well as the increased center-of-mass energy. These conditions result in a higher abundance of events with dense track environments, such as the core of jets or boosted tau leptons undergoing three-prong decays. These environments are characterised by charged particle separations on the order of the ATLAS inner detector sensor dimensions and are created by the decay of boosted objects. Significant upgrades were made to the track reconstruction software to cope with the expected conditions during LHC Run 2. In particular, new algorithms targeting dense environments were developed. These changes lead to a substantial reduction of reconstruction time while at the same time improving physics performance. The employed methods are presented and physics performance studies are shown, including a measurement of the fraction of lost tracks in jets with high transverse momentum.
Gagnon, Louis-Guillaume; The ATLAS collaboration
2016-01-01
ATLAS track reconstruction code is continuously evolving to match the demands from the increasing instantaneous luminosity of LHC, as well as the increased centre-of-mass energy. With the increase in energy, events with dense environments, e.g. the cores of jets or boosted tau leptons, become much more abundant. These environments are characterised by charged particle separations on the order of ATLAS inner detector sensor dimensions and are created by the decay of boosted objects. Significant upgrades were made to the track reconstruction code to cope with the expected conditions during LHC Run 2. In particular, new algorithms targeting dense environments were developed. These changes lead to a substantial reduction of reconstruction time while at the same time improving physics performance. The employed methods are presented. In addition, physics performance studies are shown, e.g. a measurement of the fraction of lost tracks in jets with high transverse momentum.
Algorithm for bionic hand reconstruction in patients with global brachial plexopathies.
Hruby, Laura A; Sturma, Agnes; Mayer, Johannes A; Pittermann, Anna; Salminger, Stefan; Aszmann, Oskar C
2017-11-01
OBJECTIVE Global brachial plexus lesions with multiple root avulsions are among the most severe nerve injuries, leading to lifelong disability. Fortunately, in most cases primary and secondary reconstructions provide a stable shoulder and restore sufficient arm function. Restoration of biological hand function, however, remains a reconstructive goal that is difficult to reach. The recently introduced concept of bionic reconstruction overcomes biological limitations of classic reconstructive surgery to restore hand function by combining selective nerve and muscle transfers with elective amputation of the functionless hand and its replacement with a prosthetic device. The authors present their treatment algorithm for bionic hand reconstruction and report on the management and long-term functional outcomes of patients with global brachial plexopathies who have undergone this innovative treatment. METHODS Thirty-four patients with posttraumatic global brachial plexopathies leading to loss of hand function consulted the Center for Advanced Restoration of Extremity Function between 2011 and 2015. Of these patients, 16 (47%) qualified for bionic reconstruction due to lack of treatment alternatives. The treatment algorithm included progressive steps with the intent of improving the biotechnological interface to allow optimal prosthetic hand replacement. In 5 patients, final functional outcome measurements were obtained with the Action Arm Research Test (ARAT), the Southampton Hand Assessment Procedure (SHAP), and the Disabilities of the Arm, Shoulder, and Hand (DASH) questionnaire. RESULTS In all 5 patients who completed functional assessments, partial hand function was restored with bionic reconstruction. ARAT scores improved from 3.4 ± 4.3 to 25.4 ± 12.7 (p = 0.043; mean ± SD) and SHAP scores improved from 10.0 ± 1.6 to 55 ± 19.7 (p = 0.042). DASH scores decreased from 57.9 ± 20.6 to 32 ± 28.6 (p = 0.042), indicating decreased disability. CONCLUSIONS The authors
An adaptive L1/2 sparse regularization algorithm for super-resolution image reconstruction
Xiong, Jiongtao; Liu, Yijun; Ye, Xiangrong
2017-05-01
In order to solve the ill-posed problem in super-resolution image reconstruction, this paper proposes an adaptive regularization way use sparse representation. We build a new L1/2 non-convex optimization model and apply reweighted L2 Norm for the adaptive algorithm in this paper. Experimental results show the significant effect in denoising and preserving edge details. It outperforms some traditional methods in the value of peak signal to noise ratio and structural similarity.
Ren, Zhong; Liu, Guodong; Huang, Zhen
2012-11-01
The image reconstruction is a key step in medical imaging (MI) and its algorithm's performance determinates the quality and resolution of reconstructed image. Although some algorithms have been used, filter back-projection (FBP) algorithm is still the classical and commonly-used algorithm in clinical MI. In FBP algorithm, filtering of original projection data is a key step in order to overcome artifact of the reconstructed image. Since simple using of classical filters, such as Shepp-Logan (SL), Ram-Lak (RL) filter have some drawbacks and limitations in practice, especially for the projection data polluted by non-stationary random noises. So, an improved wavelet denoising combined with parallel-beam FBP algorithm is used to enhance the quality of reconstructed image in this paper. In the experiments, the reconstructed effects were compared between the improved wavelet denoising and others (directly FBP, mean filter combined FBP and median filter combined FBP method). To determine the optimum reconstruction effect, different algorithms, and different wavelet bases combined with three filters were respectively test. Experimental results show the reconstruction effect of improved FBP algorithm is better than that of others. Comparing the results of different algorithms based on two evaluation standards i.e. mean-square error (MSE), peak-to-peak signal-noise ratio (PSNR), it was found that the reconstructed effects of the improved FBP based on db2 and Hanning filter at decomposition scale 2 was best, its MSE value was less and the PSNR value was higher than others. Therefore, this improved FBP algorithm has potential value in the medical imaging.
Evaluation of the OSC-TV iterative reconstruction algorithm for cone-beam optical CT.
Matenine, Dmitri; Mascolo-Fortin, Julia; Goussard, Yves; Després, Philippe
2015-11-01
The present work evaluates an iterative reconstruction approach, namely, the ordered subsets convex (OSC) algorithm with regularization via total variation (TV) minimization in the field of cone-beam optical computed tomography (optical CT). One of the uses of optical CT is gel-based 3D dosimetry for radiation therapy, where it is employed to map dose distributions in radiosensitive gels. Model-based iterative reconstruction may improve optical CT image quality and contribute to a wider use of optical CT in clinical gel dosimetry. This algorithm was evaluated using experimental data acquired by a cone-beam optical CT system, as well as complementary numerical simulations. A fast GPU implementation of OSC-TV was used to achieve reconstruction times comparable to those of conventional filtered backprojection. Images obtained via OSC-TV were compared with the corresponding filtered backprojections. Spatial resolution and uniformity phantoms were scanned and respective reconstructions were subject to evaluation of the modulation transfer function, image uniformity, and accuracy. The artifacts due to refraction and total signal loss from opaque objects were also studied. The cone-beam optical CT data reconstructions showed that OSC-TV outperforms filtered backprojection in terms of image quality, thanks to a model-based simulation of the photon attenuation process. It was shown to significantly improve the image spatial resolution and reduce image noise. The accuracy of the estimation of linear attenuation coefficients remained similar to that obtained via filtered backprojection. Certain image artifacts due to opaque objects were reduced. Nevertheless, the common artifact due to the gel container walls could not be eliminated. The use of iterative reconstruction improves cone-beam optical CT image quality in many ways. The comparisons between OSC-TV and filtered backprojection presented in this paper demonstrate that OSC-TV can potentially improve the rendering of
Elisa, Casella; Rovere, Alessio; Harris, Daniel; Parravicini, Valeriano
2016-04-01
Surveys based on Remotely Piloted Aircraft Systems (RPAS), together with new-generation Structure from Motion (SfM) and Multi-View Stereo (MVS) reconstruction algorithms have been employed to reconstruct the shallow bathymetry of the inner lagoon of a coral reef in Moorea, French Polinesia. This technique has already been used with a high rate of success on coastal environments (e.g. sandy beaches and rocky shorelines) reaching accuracy of the final Digital Elevation Model in the order of few centimeters. The application of such techniques to reconstruct shallow underwater environments is, though, still little reported. We then used the bathymetric dataset obtained from aerial pictures as ground-truth for relative bathymetry obtained from satellite imagery (WorldView-2) of a larger area within the same study site. The first results of our work suggest that RPAS coupled with SfM and MVS algorithms can be used to reconstruct shallow water environments with favorable weather conditions, and can be employed to ground-truth to satellite imagery.
Procedure and algorithm of 3D reconstruction of large-scale ancient architecture
Xia, Song; Zhu, Yixuan; Li, Xin
2006-02-01
3D reconstruction plays an essential role in the documentation and protection of ancient architecture. 3D reconstruction and photogrammetry are mainly used to conserve the datum and restore the 3D model of large-scale ancient architecture in our work. The whole procedure and an algorithm on space polyhedron are investigated in this paper. Firstly lots of conspicuous feature points are laid around the huge granite in order to construct a local and temporary 3D controlling field with sufficiently high precision. And feature points on the granite are obtained by means of photogrammetry. We use DLT (Direct Linear Transform) to calculate coordinates of feature points and accuracy evaluation of all feature points can be obtained simultaneously. A new generation algorithm for spatial convex polyhedron is presented and realized efficiently in our research. And we can get 3D model of the granite. In order to reduce duplicate storage of points and edges of the model, model connection and optimization are performed to complete the modeling process. Realistic material can be attached to the 3D model in 3DMAX. At last rendering and animation of the 3D model are completed and we got the reconstructive model of the granite. We use the approach mentioned above to realize the 3D reconstruction of large-scale ancient architecture successfully.
Saleh, D B; Liddington, M I; Loughenbury, P; Fenn, C W; Baker, R; Burke, D
2012-11-01
Our unit has implemented an algorithm for irradiated perineal reconstruction incorporating current evidence and a new technique in line with the advent of laparoscopic tumour excision. Our approach attempts to maintain the benefits patients derive from minimally invasive oncological surgery. Four consecutive patients had uterine retroversion to obturate pelvic deadspace and reconstruct the posterior vaginal wall. Age range was 41-84 years and mean follow-up of 21 months with mean in-patient stay of 7 days. All patients had neoadjuvant radiotherapy or chemoradiation for low rectal/anorectal adenocarcinoma. All patients had laparoscopic Extended APER and contiguous posterior vaginal wall excision and reconstruction with uterine retroversion and z-plasty skin closure. One patient required ultrasound aspiration of a pre-sacral seroma at two months. No patients returned to theatre for major complications. We highlight one minor and no major complications associated with an algorithmic approach incorporating our method of uterine retroversion and z-plasty parallel to traditional flap reconstruction methods. Copyright © 2012. Published by Elsevier Ltd.
Spyropoulou, Georgia-Alexandra; Shih, Hsiang-Shun; Jeng, Seng-Feng
2015-12-01
We present a review of all the cases of free toe pulp transfer and an algorithm for application of free pulp transfer in complicated Allen fingertip defect. Seventeen patients underwent free toe pulp transfer for fingertip reconstruction by the senior author. Twelve cases were Allen type II with oblique pulp defect, 4 were Allen type III, and 1 patient had 2 fingertip injuries classified both as type IV. According to the algorithm presented, for the type III defects where the germinal matrix is still preserved, we use free pulp transfer and nail bed graft to preserve the nail growth instead of toe to hand transfer. For the type IV injuries with multiple defects, a combination of web flap from both big toe and second toe is possible for 1-stage reconstruction. All pulp flaps survived completely. Static 2-point discrimination ranged from 6 to 15 mm (mean: 10.5 mm). No patient presented dysesthesia, hyperesthesia, pain at rest, or cold intolerance. The donor site did not present any nuisances apart from partial skin graft loss in 3 cases. We tried to classify and modify the defects' reconstruction according to Allen classification. Free toe pulp transfer is a "like with like" reconstruction that provides sensate, glabrous skin with good color and texture match for fingertip trauma, and minimal donor site morbidity compared with traditional toe to hand transfer.
Reconstruction of sound speed profile through natural generalized inverse technique
Digital Repository Service at National Institute of Oceanography (India)
Murty, T.V.R.; Somayajulu, Y.K.; Murty, C.S.
An acoustic model has been developed for reconstruction of vertical sound speed in a near stable or stratified ocean. Generalized inverse method is utilised in the model development. Numerical experiments have been carried out to account...
A framelet-based iterative maximum-likelihood reconstruction algorithm for spectral CT
Wang, Yingmei; Wang, Ge; Mao, Shuwei; Cong, Wenxiang; Ji, Zhilong; Cai, Jian-Feng; Ye, Yangbo
2016-11-01
Standard computed tomography (CT) cannot reproduce spectral information of an object. Hardware solutions include dual-energy CT which scans the object twice in different x-ray energy levels, and energy-discriminative detectors which can separate lower and higher energy levels from a single x-ray scan. In this paper, we propose a software solution and give an iterative algorithm that reconstructs an image with spectral information from just one scan with a standard energy-integrating detector. The spectral information obtained can be used to produce color CT images, spectral curves of the attenuation coefficient μ (r,E) at points inside the object, and photoelectric images, which are all valuable imaging tools in cancerous diagnosis. Our software solution requires no change on hardware of a CT machine. With the Shepp-Logan phantom, we have found that although the photoelectric and Compton components were not perfectly reconstructed, their composite effect was very accurately reconstructed as compared to the ground truth and the dual-energy CT counterpart. This means that our proposed method has an intrinsic benefit in beam hardening correction and metal artifact reduction. The algorithm is based on a nonlinear polychromatic acquisition model for x-ray CT. The key technique is a sparse representation of iterations in a framelet system. Convergence of the algorithm is studied. This is believed to be the first application of framelet imaging tools to a nonlinear inverse problem.
Fast hybrid CPU- and GPU-based CT reconstruction algorithm using air skipping technique.
Lee, Byeonghun; Lee, Ho; Shin, Yeong Gil
2010-01-01
This paper presents a fast hybrid CPU- and GPU-based CT reconstruction algorithm to reduce the amount of back-projection operation using air skipping involving polygon clipping. The algorithm easily and rapidly selects air areas that have significantly higher contrast in each projection image by applying K-means clustering method on CPU, and then generates boundary tables for verifying valid region using segmented air areas. Based on these boundary tables of each projection image, clipped polygon that indicates active region when back-projection operation is performed on GPU is determined on each volume slice. This polygon clipping process makes it possible to use smaller number of voxels to be back-projected, which leads to a faster GPU-based reconstruction method. This approach has been applied to a clinical data set and Shepp-Logan phantom data sets having various ratio of air region for quantitative and qualitative comparison and analysis of our and conventional GPU-based reconstruction methods. The algorithm has been proved to reduce computational time to half without losing any diagnostic information, compared to conventional GPU-based approaches.
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Chong Fan
2017-03-01
Full Text Available A sub-block algorithm is usually applied in the super-resolution (SR reconstruction of images because of limitations in computer memory. However, the sub-block SR images can hardly achieve a seamless image mosaicking because of the uneven distribution of brightness and contrast among these sub-blocks. An effectively improved weighted Wallis dodging algorithm is proposed, aiming at the characteristic that SR reconstructed images are gray images with the same size and overlapping region. This algorithm can achieve consistency of image brightness and contrast. Meanwhile, a weighted adjustment sequence is presented to avoid the spatial propagation and accumulation of errors and the loss of image information caused by excessive computation. A seam line elimination method can share the partial dislocation in the seam line to the entire overlapping region with a smooth transition effect. Subsequently, the improved method is employed to remove the uneven illumination for 900 SR reconstructed images of ZY-3. Then, the overlapping image mosaic method is adopted to accomplish a seamless image mosaic based on the optimal seam line.
Fan, Chong; Chen, Xushuai; Zhong, Lei; Zhou, Min; Shi, Yun; Duan, Yulin
2017-03-18
A sub-block algorithm is usually applied in the super-resolution (SR) reconstruction of images because of limitations in computer memory. However, the sub-block SR images can hardly achieve a seamless image mosaicking because of the uneven distribution of brightness and contrast among these sub-blocks. An effectively improved weighted Wallis dodging algorithm is proposed, aiming at the characteristic that SR reconstructed images are gray images with the same size and overlapping region. This algorithm can achieve consistency of image brightness and contrast. Meanwhile, a weighted adjustment sequence is presented to avoid the spatial propagation and accumulation of errors and the loss of image information caused by excessive computation. A seam line elimination method can share the partial dislocation in the seam line to the entire overlapping region with a smooth transition effect. Subsequently, the improved method is employed to remove the uneven illumination for 900 SR reconstructed images of ZY-3. Then, the overlapping image mosaic method is adopted to accomplish a seamless image mosaic based on the optimal seam line.
Effect of filters and reconstruction algorithms on I-124 PET in Siemens Inveon PET scanner
Ram Yu, A.; Kim, Jin Su
2015-10-01
Purpose: To assess the effects of filtering and reconstruction on Siemens I-124 PET data. Methods: A Siemens Inveon PET was used. Spatial resolution of I-124 was measured to a transverse offset of 50 mm from the center FBP, 2D ordered subset expectation maximization (OSEM2D), 3D re-projection algorithm (3DRP), and maximum a posteriori (MAP) methods were tested. Non-uniformity (NU), recovery coefficient (RC), and spillover ratio (SOR) parameterized image quality. Mini deluxe phantom data of I-124 was also assessed. Results: Volumetric resolution was 7.3 mm3 from the transverse FOV center when FBP reconstruction algorithms with ramp filter was used. MAP yielded minimal NU with β =1.5. OSEM2D yielded maximal RC. SOR was below 4% for FBP with ramp, Hamming, Hanning, or Shepp-Logan filters. Based on the mini deluxe phantom results, an FBP with Hanning or Parzen filters, or a 3DRP with Hanning filter yielded feasible I-124 PET data.Conclusions: Reconstruction algorithms and filters were compared. FBP with Hanning or Parzen filters, or 3DRP with Hanning filter yielded feasible data for quantifying I-124 PET.
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Kerri-Ann Norton
Full Text Available Ductal carcinoma in situ (DCIS is a pre-invasive carcinoma of the breast that exhibits several distinct morphologies but the link between morphology and patient outcome is not clear. We hypothesize that different mechanisms of growth may still result in similar 2D morphologies, which may look different in 3D. To elucidate the connection between growth and 3D morphology, we reconstruct the 3D architecture of cribriform DCIS from resected patient material. We produce a fully automated algorithm that aligns, segments, and reconstructs 3D architectures from microscopy images of 2D serial sections from human specimens. The alignment algorithm is based on normalized cross correlation, the segmentation algorithm uses histogram equilization, Otsu's thresholding, and morphology techniques to segment the duct and cribra. The reconstruction method combines these images in 3D. We show that two distinct 3D architectures are indeed found in samples whose 2D histological sections are similarly identified as cribriform DCIS. These differences in architecture support the hypothesis that luminal spaces may form due to different mechanisms, either isolated cell death or merging fronds, leading to the different architectures. We find that out of 15 samples, 6 were found to have 'bubble-like' cribra, 6 were found to have 'tube-like' criba and 3 were 'unknown.' We propose that the 3D architectures found, 'bubbles' and 'tubes', account for some of the heterogeneity of the disease and may be prognostic indicators of different patient outcomes.
Bournez, E.; Landes, T.; Saudreau, M.; Kastendeuch, P.; Najjar, G.
2017-02-01
3D models of tree geometry are important for numerous studies, such as for urban planning or agricultural studies. In climatology, tree models can be necessary for simulating the cooling effect of trees by estimating their evapotranspiration. The literature shows that the more accurate the 3D structure of a tree is, the more accurate microclimate models are. This is the reason why, since 2013, we have been developing an algorithm for the reconstruction of trees from terrestrial laser scanner (TLS) data, which we call TreeArchitecture. Meanwhile, new promising algorithms dedicated to tree reconstruction have emerged in the literature. In this paper, we assess the capacity of our algorithm and of two others -PlantScan3D and SimpleTree- to reconstruct the 3D structure of trees. The aim of this reconstruction is to be able to characterize the geometric complexity of trees, with different heights, sizes and shapes of branches. Based on a specific surveying workflow with a TLS, we have acquired dense point clouds of six different urban trees, with specific architectures, before reconstructing them with each algorithm. Finally, qualitative and quantitative assessments of the models are performed using reference tree reconstructions and field measurements. Based on this assessment, the advantages and the limits of every reconstruction algorithm are highlighted. Anyway, very satisfying results can be reached for 3D reconstructions of tree topology as well as of tree volume.
Time-Domain Techniques for Computation and Reconstruction of One-Dimensional Profiles
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M. Rahman
2005-01-01
Full Text Available This paper presents a time-domain technique to compute the electromagnetic fields and to reconstruct the permittivity profile within a one-dimensional medium of finite length. The medium is characterized by a permittivity as well as conductivity profile which vary only with depth. The discussed scattering problem is thus one-dimensional. The modeling tool is divided into two different schemes which are named as the forward solver and the inverse solver. The task of the forward solver is to compute the internal fields of the specimen which is performed by Green’s function approach. When a known electromagnetic wave is incident normally on the media, the resulting electromagnetic field within the media can be calculated by constructing a Green’s operator. This operator maps the incident field on either side of the medium to the field at an arbitrary observation point. It is nothing but a matrix of integral operators with kernels satisfying known partial differential equations. The reflection and transmission behavior of the medium is also determined from the boundary values of the Green's operator. The inverse solver is responsible for solving an inverse scattering problem by reconstructing the permittivity profile of the medium. Though it is possible to use several algorithms to solve this problem, the invariant embedding method, also known as the layer-stripping method, has been implemented here due to the advantage that it requires a finite time trace of reflection data. Here only one round trip of reflection data is used, where one round trip is defined by the time required by the pulse to propagate through the medium and back again. The inversion process begins by retrieving the reflection kernel from the reflected wave data by simply using a deconvolution technique. The rest of the task can easily be performed by applying a numerical approach to determine different profile parameters. Both the solvers have been found to have the
Sparse Coding Algorithm with Negentropy and Weighted ℓ1-Norm for Signal Reconstruction
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Yingxin Zhao
2017-11-01
Full Text Available Compressive sensing theory has attracted widespread attention in recent years and sparse signal reconstruction has been widely used in signal processing and communication. This paper addresses the problem of sparse signal recovery especially with non-Gaussian noise. The main contribution of this paper is the proposal of an algorithm where the negentropy and reweighted schemes represent the core of an approach to the solution of the problem. The signal reconstruction problem is formalized as a constrained minimization problem, where the objective function is the sum of a measurement of error statistical characteristic term, the negentropy, and a sparse regularization term, ℓp-norm, for 0 < p < 1. The ℓp-norm, however, leads to a non-convex optimization problem which is difficult to solve efficiently. Herein we treat the ℓp -norm as a serious of weighted ℓ1-norms so that the sub-problems become convex. We propose an optimized algorithm that combines forward-backward splitting. The algorithm is fast and succeeds in exactly recovering sparse signals with Gaussian and non-Gaussian noise. Several numerical experiments and comparisons demonstrate the superiority of the proposed algorithm.
John, Hannah Eliza; Jessop, Zita Maria; Di Candia, Michele; Simcock, Jeremy; Durrani, Amer J; Malata, Charles M
2013-07-01
This paper aims to simplify the approach to reconstruction of the perineum after resection of malignancies of the anal canal, lower rectum, vulva, and vagina. The data were collected from 2 centers, namely, Addenbrooke's Hospital, University of Cambridge, United Kingdom and Christchurch Hospital, University of Otago, New Zealand. All patients who underwent perineal reconstruction from 1997 to 2009 at Christchurch Hospital (13 years) and 2001 to 2009 at Addenbrooke's Hospital (9 years) were included. The diagnosis (indication), primary surgery, reconstructive surgery, complications, tumor outcomes (recurrence and survival), and follow-up were entered into a database (Microsoft Excel; Redmond, Wash). The incidence of previous radiotherapy, requirement for adjuvant radiotherapy, and length of inpatient stay were also recorded. Forty-six patients were identified for this study--13 in New Zealand and 33 in Cambridge. Indications for perineal reconstruction included resection of anal and rectal malignancies (24), vulval and vaginal malignancy (19), perineal sarcoma (1), and perineal squamous cell carcinoma arising in an enterocutaneous fistula (Table 1). The reconstructive strategies adopted included rectus abdominis myocutaneous flaps (26), gluteal fold flaps (9), gracilis V-Y or advancement flaps (7) and others (4), gluteal rotation flaps (1), local flap (2), and free latissimus dorsi flaps (1). Although various surgeons performed the reconstructive surgeries at 2 different centers, the essential approach remained the same. Smaller defects were best treated by local flaps, whereas the rectus abdominis flap remained the standard option for larger defects that additionally required closure of dead space. On the basis of our 2 center experience, we propose a simple algorithm to facilitate the planning of reconstructive surgery for the perineum.
Performance of 3DOSEM and MAP algorithms for reconstructing low count SPECT acquisitions
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Grootjans, Willem [Radboud Univ. Medical Center, Nijmegen (Netherlands). Dept. of Radiology and Nuclear Medicine; Leiden Univ. Medical Center (Netherlands). Dept. of Radiology; Meeuwis, Antoi P.W.; Gotthardt, Martin; Visser, Eric P. [Radboud Univ. Medical Center, Nijmegen (Netherlands). Dept. of Radiology and Nuclear Medicine; Slump, Cornelis H. [Univ. Twente, Enschede (Netherlands). MIRA Inst. for Biomedical Technology and Technical Medicine; Geus-Oei, Lioe-Fee de [Radboud Univ. Medical Center, Nijmegen (Netherlands). Dept. of Radiology and Nuclear Medicine; Univ. Twente, Enschede (Netherlands). MIRA Inst. for Biomedical Technology and Technical Medicine; Leiden Univ. Medical Center (Netherlands). Dept. of Radiology
2016-07-01
Low count single photon emission computed tomography (SPECT) is becoming more important in view of whole body SPECT and reduction of radiation dose. In this study, we investigated the performance of several 3D ordered subset expectation maximization (3DOSEM) and maximum a posteriori (MAP) algorithms for reconstructing low count SPECT images. Phantom experiments were conducted using the National Electrical Manufacturers Association (NEMA) NU2 image quality (IQ) phantom. The background compartment of the phantom was filled with varying concentrations of pertechnetate and indiumchloride, simulating various clinical imaging conditions. Images were acquired using a hybrid SPECT/CT scanner and reconstructed with 3DOSEM and MAP reconstruction algorithms implemented in Siemens Syngo MI.SPECT (Flash3D) and Hermes Hybrid Recon Oncology (Hyrid Recon 3DOSEM and MAP). Image analysis was performed by calculating the contrast recovery coefficient (CRC),percentage background variability (N%), and contrast-to-noise ratio (CNR), defined as the ratio between CRC and N%. Furthermore, image distortion is characterized by calculating the aspect ratio (AR) of ellipses fitted to the hot spheres. Additionally, the performance of these algorithms to reconstruct clinical images was investigated. Images reconstructed with 3DOSEM algorithms demonstrated superior image quality in terms of contrast and resolution recovery when compared to images reconstructed with filtered-back-projection (FBP), OSEM and 2DOSEM. However, occurrence of correlated noise patterns and image distortions significantly deteriorated the quality of 3DOSEM reconstructed images. The mean AR for the 37, 28, 22, and 17 mm spheres was 1.3, 1.3, 1.6, and 1.7 respectively. The mean N% increase in high and low count Flash3D and Hybrid Recon 3DOSEM from 5.9% and 4.0% to 11.1% and 9.0%, respectively. Similarly, the mean CNR decreased in high and low count Flash3D and Hybrid Recon 3DOSEM from 8.7 and 8.8 to 3.6 and 4
Bin, Yan; Yu, Han; Feng, Zhang; Chao, Wang Xian; Lei, Li
2013-01-01
High radiation dose in computed tomography (CT) scans increases the lifetime risk of cancer, which become a major clinical concern. The backprojection-filtration (BPF) algorithm could reduce radiation dose by reconstructing images from truncated data in a short scan. In dental CT, it could reduce radiation dose for the teeth by using the projection acquired in a short scan, and could avoid irradiation to other part by using truncated projection. However, the limit of integration for backprojection varies per PI-line, resulting in low calculation efficiency and poor parallel performance. Recently, a tent BPF (T-BPF) has been proposed to improve calculation efficiency by rearranging projection. However, the memory-consuming data rebinning process is included. Accordingly, the chose-BPF (C-BPF) algorithm is proposed in this paper. In this algorithm, the derivative of projection is backprojected to the points whose x coordinate is less than that of the source focal spot to obtain the differentiated backprojection...
Zhang, Lei; Li, Dong; Liu, Yu; Liu, Jingxiao; Li, Jingsong; Yu, Benli
2017-11-01
We demonstrate the validity of the simultaneous reverse optimization reconstruction (SROR) algorithm in circular subaperture stitching interferometry (CSSI), which is previously proposed for non-null aspheric annular subaperture stitching interferometry (ASSI). The merits of the modified SROR algorithm in CSSI, such as auto retrace error correction, no need of overlap and even permission of missed coverage, are analyzed in detail in simulations and experiments. Meanwhile, a practical CSSI system is proposed for this demonstration. An optical wedge is employed to deflect the incident beam for subaperture scanning by its rotation and shift instead of the six-axis motion-control system. Also the reference path can provide variable Zernike defocus for each subaperture test, which would decrease the fringe density. Experiments validating the SROR algorithm in this CSSI is implemented with cross validation by testing of paraboloidal mirror, flat mirror and astigmatism mirror. It is an indispensable supplement in SROR application in general subaperture stitching interferometry.
A reconstruction algorithm for electrical impedance tomography based on sparsity regularization
Jin, Bangti
2011-08-24
This paper develops a novel sparse reconstruction algorithm for the electrical impedance tomography problem of determining a conductivity parameter from boundary measurements. The sparsity of the \\'inhomogeneity\\' with respect to a certain basis is a priori assumed. The proposed approach is motivated by a Tikhonov functional incorporating a sparsity-promoting ℓ 1-penalty term, and it allows us to obtain quantitative results when the assumption is valid. A novel iterative algorithm of soft shrinkage type was proposed. Numerical results for several two-dimensional problems with both single and multiple convex and nonconvex inclusions were presented to illustrate the features of the proposed algorithm and were compared with one conventional approach based on smoothness regularization. © 2011 John Wiley & Sons, Ltd.
Chapal-Ilani, Noa; Maruvka, Yosef E; Spiro, Adam; Reizel, Yitzhak; Adar, Rivka; Shlush, Liran I; Shapiro, Ehud
2013-01-01
Organism cells proliferate and die to build, maintain, renew and repair it. The cellular history of an organism up to any point in time can be captured by a cell lineage tree in which vertices represent all organism cells, past and present, and directed edges represent progeny relations among them. The root represents the fertilized egg, and the leaves represent extant and dead cells. Somatic mutations accumulated during cell division endow each organism cell with a genomic signature that is unique with a very high probability. Distances between such genomic signatures can be used to reconstruct an organism's cell lineage tree. Cell populations possess unique features that are absent or rare in organism populations (e.g., the presence of stem cells and a small number of generations since the zygote) and do not undergo sexual reproduction, hence the reconstruction of cell lineage trees calls for careful examination and adaptation of the standard tools of population genetics. Our lab developed a method for reconstructing cell lineage trees by examining only mutations in highly variable microsatellite loci (MS, also called short tandem repeats, STR). In this study we use experimental data on somatic mutations in MS of individual cells in human and mice in order to validate and quantify the utility of known lineage tree reconstruction algorithms in this context. We employed extensive measurements of somatic mutations in individual cells which were isolated from healthy and diseased tissues of mice and humans. The validation was done by analyzing the ability to infer known and clear biological scenarios. In general, we found that if the biological scenario is simple, almost all algorithms tested can infer it. Another somewhat surprising conclusion is that the best algorithm among those tested is Neighbor Joining where the distance measure used is normalized absolute distance. We include our full dataset in Tables S1, S2, S3, S4, S5 to enable further analysis of this
A fast stereo matching algorithm for 3D reconstruction of internal organs in laparoscopic surgery
Okada, Yoshimichi; Koishi, Takeshi; Ushiki, Suguru; Nakaguchi, Toshiya; Tsumura, Norimichi; Miyake, Yoichi
2008-03-01
We propose a fast stereo matching algorithm for 3D reconstruction of internal organs using a stereoscopic laparoscope. Stoyanov et al. have proposed a technique for recovering the 3D depth of internal organs from images taken by a stereoscopic laparoscope. In their technique, the dense stereo correspondence is solved by registration of the entire image. However, the computational cost is very high because registration of the entire image requires multidimensional optimization. In this paper, we propose a new algorithm based on a local area registration method that requires only low-dimensional optimization for reduction of computational cost. We evaluated the computational cost of the proposed algorithm using a stereoscopic laparoscope. We also evaluated the accuracy of the proposed algorithm using three types of images of abdominal models taken by a 3D laser scanner. In the matching step, the size of the template used to calculate the correlation coefficient, on which the computational cost is strongly dependent, was reduced by a factor of 16 as compared with the conventional algorithm. On the other hand, the average depth errors were 4.68 mm, 7.18 mm, and 7.44 mm respectively, and accuracy was approximately as same as the conventional algorithm.
Han, Miaomiao; Guo, Zhirong; Liu, Haifeng; Li, Qinghua
2017-07-01
This paper studies the influence of different path length computation models and iterative reconstruction algorithms on the quality of transmission reconstruction in Tomographic Gamma Scanning. The research purpose is to quantify and to localize heterogeneous matrices while investigating the recovery of linear attenuation coefficients (LACs) maps in 200 liter drums. Two different path length computation models so called ;point to point (PP); model and ;point to detector (PD); model are coupled with two different transmission reconstruction algorithms - Algebraic Reconstruction Technique (ART) with non-negativity constraint, and Maximum Likelihood Expectation Maximization (MLEM), respectively. Thus 4 modes are formed: ART-PP, ART-PD, MLEM-PP, MLEM-PD. The inter-comparison of transmission reconstruction qualities of these 4 modes is taken into account for heterogeneous matrices in the radioactive waste drums. Results illustrate that transmission-reconstructed qualities of MLEM algorithm are better than ART algorithm to get the most accurate LACs maps in good agreement with the reference data simulated by Monte Carlo. Moreover, PD model can be used to assay higher density waste drum and has a greater scope of application than PP model in TGS.
Hohage, Thorsten; Giewekemeyer, Klaus; Salditt, Tim
2008-05-01
Analysis of x-ray and neutron reflectivity is usually performed by modeling the density profile of the sample and performing a least square fit to the measured (phaseless) reflectivity data. Here we address the uniqueness of the reflectivity problem as well as its numerical reconstruction. In particular, we derive conditions for uniqueness, which are applicable in the kinematic limit (Born approximation), and for the most relevant case of box model profiles with Gaussian roughness. At the same time we present an iterative method to reconstruct the profile based on regularization methods. The method is successfully implemented and tested both on simulated and real experimental data.
Peille, Phillip; Ceballos, Maria Teresa; Cobo, Beatriz; Wilms, Joern; Bandler, Simon; Smith, Stephen J.; Dauser, Thomas; Brand, Thorsten; Den Haretog, Roland; de Plaa, Jelle;
2016-01-01
The X-ray Integral Field Unit (X-IFU) microcalorimeter, on-board Athena, with its focal plane comprising 3840 Transition Edge Sensors (TESs) operating at 90 mK, will provide unprecedented spectral-imaging capability in the 0.2-12 keV energy range. It will rely on the on-board digital processing of current pulses induced by the heat deposited in the TES absorber, as to recover the energy of each individual events. Assessing the capabilities of the pulse reconstruction is required to understand the overall scientific performance of the X-IFU, notably in terms of energy resolution degradation with both increasing energies and count rates. Using synthetic data streams generated by the X-IFU End-to-End simulator, we present here a comprehensive benchmark of various pulse reconstruction techniques, ranging from standard optimal filtering to more advanced algorithms based on noise covariance matrices. Beside deriving the spectral resolution achieved by the different algorithms, a first assessment of the computing power and ground calibration needs is presented. Overall, all methods show similar performances, with the reconstruction based on noise covariance matrices showing the best improvement with respect to the standard optimal filtering technique. Due to prohibitive calibration needs, this method might however not be applicable to the X-IFU and the best compromise currently appears to be the so-called resistance space analysis which also features very promising high count rate capabilities.
Single-Cell Tracking with PET using a Novel Trajectory Reconstruction Algorithm
Lee, Keum Sil; Kim, Tae Jin
2015-01-01
Virtually all biomedical applications of positron emission tomography (PET) use images to represent the distribution of a radiotracer. However, PET is increasingly used in cell tracking applications, for which the “imaging” paradigm may not be optimal. Here we investigate an alternative approach, which consists in reconstructing the time-varying position of individual radiolabeled cells directly from PET measurements. As a proof of concept, we formulate a new algorithm for reconstructing the trajectory of one single moving cell directly from list-mode PET data. We model the trajectory as a 3D B-spline function of the temporal variable and use non-linear optimization to minimize the mean-square distance between the trajectory and the recorded list-mode coincidence events. Using Monte Carlo simulations (GATE), we show that this new algorithm can track a single source moving within a small-animal PET system with <3 mm accuracy provided that the activity of the cell [Bq] is greater than four times its velocity [mm/s]. The algorithm outperforms conventional ML-EM as well as the “minimum distance” method used for positron emission particle tracking (PEPT). The new method was also successfully validated using experimentally acquired PET data. In conclusion, we demonstrated the feasibility of a new method for tracking a single moving cell directly from PET list-mode data, at the whole-body level, for physiologically relevant activities and velocities. PMID:25423651
Precht, Helle; Thygesen, Jesper; Gerke, Oke; Egstrup, Kenneth; Waaler, Dag; Lambrechtsen, Jess
2016-12-01
Coronary computed tomography angiography (CCTA) requires high spatial and temporal resolution, increased low contrast resolution for the assessment of coronary artery stenosis, plaque detection, and/or non-coronary pathology. Therefore, new reconstruction algorithms, particularly iterative reconstruction (IR) techniques, have been developed in an attempt to improve image quality with no cost in radiation exposure. To evaluate whether adaptive statistical iterative reconstruction (ASIR) enhances perceived image quality in CCTA compared to filtered back projection (FBP). Thirty patients underwent CCTA due to suspected coronary artery disease. Images were reconstructed using FBP, 30% ASIR, and 60% ASIR. Ninety image sets were evaluated by five observers using the subjective visual grading analysis (VGA) and assessed by proportional odds modeling. Objective quality assessment (contrast, noise, and the contrast-to-noise ratio [CNR]) was analyzed with linear mixed effects modeling on log-transformed data. The need for ethical approval was waived by the local ethics committee as the study only involved anonymously collected clinical data. VGA showed significant improvements in sharpness by comparing FBP with ASIR, resulting in odds ratios of 1.54 for 30% ASIR and 1.89 for 60% ASIR (P = 0.004). The objective measures showed significant differences between FBP and 60% ASIR (P ASIR improved the subjective image quality of parameter sharpness and, objectively, reduced noise and increased CNR.
Denewer, Adel; Khater, Ashraf; Hafez, Mohamed T; Hussein, Osama; Roshdy, Sameh; Shahatto, Fayez; Elnahas, Waleed; Kotb, Sherif; Mowafy, Khaled
2014-06-09
The aim of this study is to define an algorithm for the choice of reconstructive method for defects after laryngo-pharyngo-esophagectomy for hypopharyngeal carcinoma. One hundred and forty two cases of hypopharyngeal carcinoma were included and operated on by either partial pharyngectomy, total pharyngectomy or esophagectomy. The reconstructive method was tailored according to the resected segment. Pectoralis flap was used in 48 cases, free jejunal flap in 28 cases, augmented colon bypass in 4 cases, gastric pull up in 32 cases and gastric tube in 30 cases. Mean hospital stay was 12 days. Mortality rate was 10.6% and morbidity rate was 31.7%. Total flap failure occurred in 3 cases of free flap and one case of pectoralis flap. There were 23 cases of early fistula. Late stricture occurred in 19 cases, being highest with myocutaneous flap (early fistula 12/50 and late stricture 13/50). Free jejunal flap was the flap of choice for reconstruction when the safety margin is still above the clavicle. In cases with added esophagectomy, we recommend gastric tube as a method of choice for reconstruction.
He, Xiaowei; Yu, Jingjing; Geng, Guohua; Guo, Hongbo
2013-10-01
As an important optical molecular imaging technique, bioluminescence tomography (BLT) offers an inexpensive and sensitive means for non-invasively imaging a variety of physiological and pathological activities at cellular and molecular levels in living small animals. The key problem of BLT is to recover the distribution of the internal bioluminescence sources from limited measurements on the surface. Considering the sparsity of the light source distribution, we directly formulate the inverse problem of BLT into an l0-norm minimization model and present a smoothed l0-norm (SL0) based reconstruction algorithm. By approximating the discontinuous l0 norm with a suitable continuous function, the SL0 norm method solves the problem of intractable computational load of the minimal l0 search as well as high sensitivity of l0-norm to noise. Numerical experiments on a mouse atlas demonstrate that the proposed SL0 norm based reconstruction method can obtain whole domain reconstruction without any a priori knowledge of the source permissible region, yielding almost the same reconstruction results to those of l1 norm methods.
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Miaomiao Bai
2014-11-01
Full Text Available In underwater blasting experiment, the layout of the sensor has always been highly concerned. From the perspective of reconstruction with explosion overpressure field, the paper presents four indicators, which can obtain the optimal sensor layout scheme and guide sensor layout in practical experiment, combining with the genetic algorithm with global search. Then, a multi-scale model in every subregion of underwater blasting field was established to be used simulation experiments. By Matlab, the variation of these four indicators with different sensor layout, and reconstruction accuracy are analyzed and discussed. Finally, a conclusion has been raised through the analysis and comparison of simulation results, that the program can get a better sensor layout. It requires fewer number of sensors to be able to get good results with high accuracy. In the actual test explosions, we can refer to this scheme laid sensors.
Krohn, Thomas; Birmes, Anita; Winz, Oliver H; Drude, Natascha I; Mottaghy, Felix M; Behrendt, Florian F; Verburg, Frederik A
2017-04-01
To investigate whether the numbers of lymph node metastases and coeliac ganglia delineated on [ 68 Ga]PSMA-HBED-CC PET/CT scans differ among datasets generated using different reconstruction algorithms. Data were constructed using the BLOB-OS-TF, BLOB-OS and 3D-RAMLA algorithms. All reconstructions were assessed by two nuclear medicine physicians for the number of pelvic/paraaortal lymph node metastases as well the number of coeliac ganglia. Standardized uptake values (SUV) were also calculated in different regions. At least one [ 68 Ga]PSMA-HBED-CC PET/CT-positive pelvic or paraaortal lymph node metastasis was found in 49 and 35 patients using the BLOB-OS-TF algorithm, in 42 and 33 patients using the BLOB-OS algorithm, and in 41 and 31 patients using the 3D-RAMLA algorithm, respectively, and a positive ganglion was found in 92, 59 and 24 of 100 patients using the three algorithms, respectively. Quantitatively, the SUVmean and SUVmax were significantly higher with the BLOB-OS algorithm than with either the BLOB-OS-TF or the 3D-RAMLA algorithm in all measured regions (p algorithms were not significant in the aorta (SUVmean, p = 0.93; SUVmax, p = 0.97) but were significant in all other regions (p algorithm than with either the BLOB-OS or the 3D-RAMLA algorithm and was significantly higher with the BLOB-OS than with the 3D-RAMLA algorithm (p algorithm used. The highest number of lesions and physiological structures will be visualized using a modern algorithm employing time-of-flight information.
Chen, Yi-nan; Jin, Wei-qi; Zhao, Lei; Gao, Mei-jing; Zhao, Lin
2008-03-01
For the subpixel micro-scanning imaging, we propose the reconstruction algorithm based on neither interpolation nor super-resolution idea but one of the block-by-block method recursive from the boundary to centre when additional narrowband boundary view-field diaphragm whose radiation is known a prior. The aim of the predicted boundary value is to add the conditions for solving the ununiqueness ill-problem to the inverse transition matrix from the destructed process. For the non-uniform scan factor, the improved algorithm associated with certain non-uniform motion variables is proposed. Additionally, attention is focused on the case of unknown subpixel motion, when the reconstructed images are blurred by motion parameter modulation and neighbouring point aliasing because the value of micro-motion is not the correct one. Unlike other methods that the image registration is accomplished before multi-frame restoration from undersampled sequences frame by frame, in this paper, 2-D motion vector is estimated in single frame just from the blur character of reconstructed grids. We demonstrate that once the estimated motion approaches to the real one, square summation of all pixels over the unmatched image approximately descends to the minimum. The matching track based on recursive Newton secant approaching is optimized for high matching speed and precision by different strategies, including matching region hunting, matching direction choosing and convergence prejudgement. All iterative step lengths with respect to motion parameters are substituted by the suitable values derived from the statistic process and one or multi-secant solution. The simulations demonstrate the feasibility of the matching algorithm and the obvious resolution enhancement compared to the direct oversampling image.
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Apfaltrer, Paul, E-mail: paul.apfaltrer@medma.uni-heidelberg.de [Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, PO Box 250322, 169 Ashley Avenue, Charleston, SC 29425 (United States); Institute of Clinical Radiology and Nuclear Medicine, Medical Faculty Mannheim, Heidelberg University, Theodor-Kutzer-Ufer 1-3, D-68167 Mannheim (Germany); Schoendube, Harald, E-mail: harald.schoendube@siemens.com [Siemens Healthcare, CT Division, Forchheim Siemens, Siemensstr. 1, 91301 Forchheim (Germany); Schoepf, U. Joseph, E-mail: schoepf@musc.edu [Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, PO Box 250322, 169 Ashley Avenue, Charleston, SC 29425 (United States); Allmendinger, Thomas, E-mail: thomas.allmendinger@siemens.com [Siemens Healthcare, CT Division, Forchheim Siemens, Siemensstr. 1, 91301 Forchheim (Germany); Tricarico, Francesco, E-mail: francescotricarico82@gmail.com [Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, PO Box 250322, 169 Ashley Avenue, Charleston, SC 29425 (United States); Department of Bioimaging and Radiological Sciences, Catholic University of the Sacred Heart, “A. Gemelli” Hospital, Largo A. Gemelli 8, Rome (Italy); Schindler, Andreas, E-mail: andreas.schindler@campus.lmu.de [Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, PO Box 250322, 169 Ashley Avenue, Charleston, SC 29425 (United States); Vogt, Sebastian, E-mail: sebastian.vogt@siemens.com [Siemens Healthcare, CT Division, Forchheim Siemens, Siemensstr. 1, 91301 Forchheim (Germany); Sunnegårdh, Johan, E-mail: johan.sunnegardh@siemens.com [Siemens Healthcare, CT Division, Forchheim Siemens, Siemensstr. 1, 91301 Forchheim (Germany); and others
2013-02-15
Objective: To evaluate the effect of a temporal resolution improvement method (TRIM) for cardiac CT on diagnostic image quality for coronary artery assessment. Materials and methods: The TRIM-algorithm employs an iterative approach to reconstruct images from less than 180° of projections and uses a histogram constraint to prevent the occurrence of limited-angle artifacts. This algorithm was applied in 11 obese patients (7 men, 67.2 ± 9.8 years) who had undergone second generation dual-source cardiac CT with 120 kV, 175–426 mAs, and 500 ms gantry rotation. All data were reconstructed with a temporal resolution of 250 ms using traditional filtered-back projection (FBP) and of 200 ms using the TRIM-algorithm. Contrast attenuation and contrast-to-noise-ratio (CNR) were measured in the ascending aorta. The presence and severity of coronary motion artifacts was rated on a 4-point Likert scale. Results: All scans were considered of diagnostic quality. Mean BMI was 36 ± 3.6 kg/m{sup 2}. Average heart rate was 60 ± 9 bpm. Mean effective dose was 13.5 ± 4.6 mSv. When comparing FBP- and TRIM reconstructed series, the attenuation within the ascending aorta (392 ± 70.7 vs. 396.8 ± 70.1 HU, p > 0.05) and CNR (13.2 ± 3.2 vs. 11.7 ± 3.1, p > 0.05) were not significantly different. A total of 110 coronary segments were evaluated. All studies were deemed diagnostic; however, there was a significant (p < 0.05) difference in the severity score distribution of coronary motion artifacts between FBP (median = 2.5) and TRIM (median = 2.0) reconstructions. Conclusion: The algorithm evaluated here delivers diagnostic imaging quality of the coronary arteries despite 500 ms gantry rotation. Possible applications include improvement of cardiac imaging on slower gantry rotation systems or mitigation of the trade-off between temporal resolution and CNR in obese patients.
Cui, Jingyu; Pratx, Guillem; Meng, Bowen; Levin, Craig S
2013-05-01
The processing speed for positron emission tomography (PET) image reconstruction has been greatly improved in recent years by simply dividing the workload to multiple processors of a graphics processing unit (GPU). However, if this strategy is generalized to a multi-GPU cluster, the processing speed does not improve linearly with the number of GPUs. This is because large data transfer is required between the GPUs after each iteration, effectively reducing the parallelism. This paper proposes a novel approach to reformulate the maximum likelihood expectation maximization (MLEM) algorithm so that it can scale up to many GPU nodes with less frequent inter-node communication. While being mathematically different, the new algorithm maximizes the same convex likelihood function as MLEM, thus converges to the same solution. Experiments on a multi-GPU cluster demonstrate the effectiveness of the proposed approach.
Pantong, Natee; Su, Jianzhong; Shan, Hua; Klibanov, Michael V; Liu, Hanli
2009-03-01
A new numerical imaging algorithm is presented for reconstruction of optical absorption coefficients from near-infrared light data with a continuous-wave source. As a continuation of our earlier efforts in developing a series of methods called "globally convergent reconstruction methods" [J. Opt. Soc. Am. A23, 2388 (2006)], this numerical algorithm solves the inverse problem through solution of a boundary-value problem for a Volterra-type integral partial differential equation. We deal here with the particular issues in solving the inverse problems in an arbitrary convex shape domain. It is demonstrated in numerical studies that this reconstruction technique is highly efficient and stable with respect to the complex distribution of actual unknown absorption coefficients. The method is particularly useful for reconstruction from a large data set obtained from a tissue or organ of particular shape, such as the prostate. Numerical reconstructions of a simulated prostate-shaped phantom with three different settings of absorption-inclusions are presented.
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Abbasi Mahdi
2012-06-01
Full Text Available Abstract Background Electrical Impedance Tomography (EIT is used as a fast clinical imaging technique for monitoring the health of the human organs such as lungs, heart, brain and breast. Each practical EIT reconstruction algorithm should be efficient enough in terms of convergence rate, and accuracy. The main objective of this study is to investigate the feasibility of precise empirical conductivity imaging using a sinc-convolution algorithm in D-bar framework. Methods At the first step, synthetic and experimental data were used to compute an intermediate object named scattering transform. Next, this object was used in a two-dimensional integral equation which was precisely and rapidly solved via sinc-convolution algorithm to find the square root of the conductivity for each pixel of image. For the purpose of comparison, multigrid and NOSER algorithms were implemented under a similar setting. Quality of reconstructions of synthetic models was tested against GREIT approved quality measures. To validate the simulation results, reconstructions of a phantom chest and a human lung were used. Results Evaluation of synthetic reconstructions shows that the quality of sinc-convolution reconstructions is considerably better than that of each of its competitors in terms of amplitude response, position error, ringing, resolution and shape-deformation. In addition, the results confirm near-exponential and linear convergence rates for sinc-convolution and multigrid, respectively. Moreover, the least degree of relative errors and the most degree of truth were found in sinc-convolution reconstructions from experimental phantom data. Reconstructions of clinical lung data show that the related physiological effect is well recovered by sinc-convolution algorithm. Conclusions Parametric evaluation demonstrates the efficiency of sinc-convolution to reconstruct accurate conductivity images from experimental data. Excellent results in phantom and clinical
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Li Xueli
2011-08-01
Full Text Available Abstract Background Computed Tomography (CT is a technology that obtains the tomogram of the observed objects. In real-world applications, especially the biomedical applications, lower radiation dose have been constantly pursued. To shorten scanning time and reduce radiation dose, one can decrease X-ray exposure time at each projection view or decrease the number of projections. Until quite recently, the traditional filtered back projection (FBP method has been commonly exploited in CT image reconstruction. Applying the FBP method requires using a large amount of projection data. Especially when the exposure speed is limited by the mechanical characteristic of the imaging facilities, using FBP method may prolong scanning time and cumulate with a high dose of radiation consequently damaging the biological specimens. Methods In this paper, we present a compressed sensing-based (CS-based iterative algorithm for CT reconstruction. The algorithm minimizes the l1-norm of the sparse image as the constraint factor for the iteration procedure. With this method, we can reconstruct images from substantially reduced projection data and reduce the impact of artifacts introduced into the CT reconstructed image by insufficient projection information. Results To validate and evaluate the performance of this CS-base iterative algorithm, we carried out quantitative evaluation studies in imaging of both software Shepp-Logan phantom and real polystyrene sample. The former is completely absorption based and the later is imaged in phase contrast. The results show that the CS-based iterative algorithm can yield images with quality comparable to that obtained with existing FBP and traditional algebraic reconstruction technique (ART algorithms. Discussion Compared with the common reconstruction from 180 projection images, this algorithm completes CT reconstruction from only 60 projection images, cuts the scan time, and maintains the acceptable quality of the
Humphries, T.; Winn, J.; Faridani, A.
2017-08-01
Recent work in CT image reconstruction has seen increasing interest in the use of total variation (TV) and related penalties to regularize problems involving reconstruction from undersampled or incomplete data. Superiorization is a recently proposed heuristic which provides an automatic procedure to ‘superiorize’ an iterative image reconstruction algorithm with respect to a chosen objective function, such as TV. Under certain conditions, the superiorized algorithm is guaranteed to find a solution that is as satisfactory as any found by the original algorithm with respect to satisfying the constraints of the problem; this solution is also expected to be superior with respect to the chosen objective. Most work on superiorization has used reconstruction algorithms which assume a linear measurement model, which in the case of CT corresponds to data generated from a monoenergetic x-ray beam. Many CT systems generate x-rays from a polyenergetic spectrum, however, in which the measured data represent an integral of object attenuation over all energies in the spectrum. This inconsistency with the linear model produces the well-known beam hardening artifacts, which impair analysis of CT images. In this work we superiorize an iterative algorithm for reconstruction from polyenergetic data, using both TV and an anisotropic TV (ATV) penalty. We apply the superiorized algorithm in numerical phantom experiments modeling both sparse-view and limited-angle scenarios. In our experiments, the superiorized algorithm successfully finds solutions which are as constraints-compatible as those found by the original algorithm, with significantly reduced TV and ATV values. The superiorized algorithm thus produces images with greatly reduced sparse-view and limited angle artifacts, which are also largely free of the beam hardening artifacts that would be present if a superiorized version of a monoenergetic algorithm were used.
Prawin, J.; Rama Mohan Rao, A.
2018-01-01
The knowledge of dynamic loads acting on a structure is always required for many practical engineering problems, such as structural strength analysis, health monitoring and fault diagnosis, and vibration isolation. In this paper, we present an online input force time history reconstruction algorithm using Dynamic Principal Component Analysis (DPCA) from the acceleration time history response measurements using moving windows. We also present an optimal sensor placement algorithm to place limited sensors at dynamically sensitive spatial locations. The major advantage of the proposed input force identification algorithm is that it does not require finite element idealization of structure unlike the earlier formulations and therefore free from physical modelling errors. We have considered three numerical examples to validate the accuracy of the proposed DPCA based method. Effects of measurement noise, multiple force identification, different kinds of loading, incomplete measurements, and high noise levels are investigated in detail. Parametric studies have been carried out to arrive at optimal window size and also the percentage of window overlap. Studies presented in this paper clearly establish the merits of the proposed algorithm for online load identification.
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Brady, S. L.; Yee, B. S.; Kaufman, R. A. [Department of Radiological Sciences, St. Jude Children' s Research Hospital, Memphis, Tennessee 38105 (United States)
2012-09-15
Purpose: This study demonstrates a means of implementing an adaptive statistical iterative reconstruction (ASiR Trade-Mark-Sign ) technique for dose reduction in computed tomography (CT) while maintaining similar noise levels in the reconstructed image. The effects of image quality and noise texture were assessed at all implementation levels of ASiR Trade-Mark-Sign . Empirically derived dose reduction limits were established for ASiR Trade-Mark-Sign for imaging of the trunk for a pediatric oncology population ranging from 1 yr old through adolescence/adulthood. Methods: Image quality was assessed using metrics established by the American College of Radiology (ACR) CT accreditation program. Each image quality metric was tested using the ACR CT phantom with 0%-100% ASiR Trade-Mark-Sign blended with filtered back projection (FBP) reconstructed images. Additionally, the noise power spectrum (NPS) was calculated for three common reconstruction filters of the trunk. The empirically derived limitations on ASiR Trade-Mark-Sign implementation for dose reduction were assessed using (1, 5, 10) yr old and adolescent/adult anthropomorphic phantoms. To assess dose reduction limits, the phantoms were scanned in increments of increased noise index (decrementing mA using automatic tube current modulation) balanced with ASiR Trade-Mark-Sign reconstruction to maintain noise equivalence of the 0% ASiR Trade-Mark-Sign image. Results: The ASiR Trade-Mark-Sign algorithm did not produce any unfavorable effects on image quality as assessed by ACR criteria. Conversely, low-contrast resolution was found to improve due to the reduction of noise in the reconstructed images. NPS calculations demonstrated that images with lower frequency noise had lower noise variance and coarser graininess at progressively higher percentages of ASiR Trade-Mark-Sign reconstruction; and in spite of the similar magnitudes of noise, the image reconstructed with 50% or more ASiR Trade-Mark-Sign presented a more
Test of Sliding Window Algorithm fir Jets Reconstruction in ATLAS Hadronic Calorimeters
Mehdiyev, R; Nevski, P; Salihagic, D
1999-01-01
Test of the ``sliding window'' jet finding algorithm has been perfor med for reconstruction of back-to-back jets in barrel and end-cap regions of the ATLAS hadronic calorimeters. Fully simulated events have been used for var ious jet energies and pseudorapidities in E (jet)=20 - 2000 GeV and eta = 0.6 - 3.05 range. The transverse energy threshold for the jet candidates was found to be the most sensitive parameter of the algorithm. The values of this parameter has been selected to maximise jet reconstruction efficiency in a window of 0.3X0.3 radians both in pseudorapidity and azimuthal angle. Plots are given to demonstrate the dependence of the optimal transverse energy threshold on the jet total energy, transverse ener gy and pseudorapidity. It is shown that the 90 - 95 % efficiency of a single jet reconstruc tion is achievable by the proper choice of the transverse energy threshold. For this range of jet energies and pseudorapidities the value of the transverse energy threshold varies between 15 - 35 % of th...
Sidky, Emil Y; Pan, Xiaochuan
2012-01-01
Iterative image reconstruction (IIR) algorithms in Computed Tomography (CT) are based on algorithms for solving a particular optimization problem. Design of the IIR algorithm, therefore, is aided by knowledge of the solution to the optimization problem on which it is based. Often times, however, it is impractical to achieve accurate solution to the optimization of interest, which complicates design of IIR algorithms. This issue is particularly acute for CT with a limited angular-range scan, which leads to poorly conditioned system matrices and difficult to solve optimization problems. In this article, we develop IIR algorithms which solve a certain type of optimization called convex feasibility. The convex feasibility approach can provide alternatives to unconstrained optimization approaches and at the same time allow for efficient algorithms for their solution -- thereby facilitating the IIR algorithm design process. An accelerated version of the Chambolle-Pock (CP) algorithm is adapted to various convex fea...
Ozone Profile Retrieval Algorithm (OPERA) for nadir-looking satellite instruments in the UV-VIS
Van Peet, J.C.A.; Van der A, R.J.; Tuinder, O.N.E.; Wolfram, E.; Salvador, J.; Levelt, P.F.; Kelder, H.M.
2014-01-01
For the retrieval of the vertical distribution of ozone in the atmosphere the Ozone ProfilE Retrieval Algorithm (OPERA) has been further developed. The new version (1.26) of OPERA is capable of retrieving ozone profiles from UV–VIS observations of most nadir-looking satellite instruments like GOME,
Median prior constrained TV algorithm for sparse view low-dose CT reconstruction.
Liu, Yi; Shangguan, Hong; Zhang, Quan; Zhu, Hongqing; Shu, Huazhong; Gui, Zhiguo
2015-05-01
It is known that lowering the X-ray tube current (mAs) or tube voltage (kVp) and simultaneously reducing the total number of X-ray views (sparse view) is an effective means to achieve low-dose in computed tomography (CT) scan. However, the associated image quality by the conventional filtered back-projection (FBP) usually degrades due to the excessive quantum noise. Although sparse-view CT reconstruction algorithm via total variation (TV), in the scanning protocol of reducing X-ray tube current, has been demonstrated to be able to result in significant radiation dose reduction while maintain image quality, noticeable patchy artifacts still exist in reconstructed images. In this study, to address the problem of patchy artifacts, we proposed a median prior constrained TV regularization to retain the image quality by introducing an auxiliary vector m in register with the object. Specifically, the approximate action of m is to draw, in each iteration, an object voxel toward its own local median, aiming to improve low-dose image quality with sparse-view projection measurements. Subsequently, an alternating optimization algorithm is adopted to optimize the associative objective function. We refer to the median prior constrained TV regularization as "TV_MP" for simplicity. Experimental results on digital phantoms and clinical phantom demonstrated that the proposed TV_MP with appropriate control parameters can not only ensure a higher signal to noise ratio (SNR) of the reconstructed image, but also its resolution compared with the original TV method. Copyright © 2015 Elsevier Ltd. All rights reserved.
Shin, Cheong-Il; Kim, Se Hyung; Im, Jong Pil; Kim, Sang Gyun; Yu, Mi Hye; Lee, Eun Sun; Han, Joon Koo
2016-03-01
To analyze the effect of different reconstruction algorithms on image noise and radiologists' performance at ultra-low dose CT colonography (CTC) in human subjects. This retrospective study had institutional review board approval, with waiver of the need to obtain informed consent. CTC and subsequent colonoscopy were performed at the same day in 28 patients. CTC was scanned at the supine/prone positions using 120/100kVp and fixed 10mAs, and reconstructed using filtered back projection (FBP), adaptive statistical iterative reconstruction (ASIR), and model-based IR (Veo) algorithms. Size-specific dose estimates (SSDE) and effective radiation doses were recorded. Image noise was compared among the three datasets using repeated measures analysis of variance (ANOVA). Per-polyp sensitivity and figure-of-merits were compared among the datasets using the McNemar test and jackknife alternative free-response receiver operating characteristic (JAFROC) analysis, respectively, by one novice and one expert reviewer in CTC. Mean SSDE and effective radiation dose of CTC were 1.732mGy and 1.002mSv, respectively. Mean image noise at supine/prone position datasets was significantly lowest with Veo (17.2/13.3), followed by ASIR (52.4/38.9) and FBP (69.9/50.8) (Preconstruction (81.0%, 64.3%), followed by ASIR (73.8%, 54.8%) and FBP (57.1%, 50.0%) with statistical significance between Veo and FBP for reader 1 (P=0.002). JAFROC analysis revealed that the figure-of-merit for the detection of polyps was highest with Veo (0.917, 0.786), followed by ASIR (0.881, 0.750) and FBP (0.750, 0.746) with statistical significances between Veo or ASIR and FBP for reader 1 (P<0.05). One-mSv CTC was not feasible using the standard FBP algorithm. However, diagnostic performance expressed as per-polyp sensitivity and figures-of-merit can be improved with the application of IR algorithms, particularly Veo. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
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Melli, Seyed Ali, E-mail: sem649@mail.usask.ca [Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK (Canada); Wahid, Khan A. [Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK (Canada); Babyn, Paul [Department of Medical Imaging, University of Saskatchewan, Saskatoon, SK (Canada); Montgomery, James [College of Medicine, University of Saskatchewan, Saskatoon, SK (Canada); Snead, Elisabeth [Western College of Veterinary Medicine, University of Saskatchewan, Saskatoon, SK (Canada); El-Gayed, Ali [College of Medicine, University of Saskatchewan, Saskatoon, SK (Canada); Pettitt, Murray; Wolkowski, Bailey [College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, SK (Canada); Wesolowski, Michal [Department of Medical Imaging, University of Saskatchewan, Saskatoon, SK (Canada)
2016-01-11
Synchrotron source propagation-based X-ray phase contrast computed tomography is increasingly used in pre-clinical imaging. However, it typically requires a large number of projections, and subsequently a large radiation dose, to produce high quality images. To improve the applicability of this imaging technique, reconstruction algorithms that can reduce the radiation dose and acquisition time without degrading image quality are needed. The proposed research focused on using a novel combination of Douglas–Rachford splitting and randomized Kaczmarz algorithms to solve large-scale total variation based optimization in a compressed sensing framework to reconstruct 2D images from a reduced number of projections. Visual assessment and quantitative performance evaluations of a synthetic abdomen phantom and real reconstructed image of an ex-vivo slice of canine prostate tissue demonstrate that the proposed algorithm is competitive in reconstruction process compared with other well-known algorithms. An additional potential benefit of reducing the number of projections would be reduction of time for motion artifact to occur if the sample moves during image acquisition. Use of this reconstruction algorithm to reduce the required number of projections in synchrotron source propagation-based X-ray phase contrast computed tomography is an effective form of dose reduction that may pave the way for imaging of in-vivo samples.
Abdalah, Mahmoud; Boutchko, Rostyslav; Mitra, Debasis; Gullberg, Grant T
2015-01-01
In this paper, we propose and validate an algorithm of extracting voxel-by-voxel time activity curves directly from inconsistent projections applied in dynamic cardiac SPECT. The algorithm was derived based on factor analysis of dynamic structures (FADS) approach and imposes prior information by applying several regularization functions with adaptively changing relative weighting. The anatomical information of the imaged subject was used to apply the proposed regularization functions adaptively in the spatial domain. The algorithm performance is validated by reconstructing dynamic datasets simulated using the NCAT phantom with a range of different input tissue time-activity curves. The results are compared to the spline-based and FADS methods. The validated algorithm is then applied to reconstruct pre-clinical cardiac SPECT data from canine and murine subjects. Images, generated from both simulated and experimentally acquired data confirm the ability of the new algorithm to solve the inverse problem of dynamic SPECT with slow gantry rotation.
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Helle Precht
2016-12-01
Full Text Available Background Coronary computed tomography angiography (CCTA requires high spatial and temporal resolution, increased low contrast resolution for the assessment of coronary artery stenosis, plaque detection, and/or non-coronary pathology. Therefore, new reconstruction algorithms, particularly iterative reconstruction (IR techniques, have been developed in an attempt to improve image quality with no cost in radiation exposure. Purpose To evaluate whether adaptive statistical iterative reconstruction (ASIR enhances perceived image quality in CCTA compared to filtered back projection (FBP. Material and Methods Thirty patients underwent CCTA due to suspected coronary artery disease. Images were reconstructed using FBP, 30% ASIR, and 60% ASIR. Ninety image sets were evaluated by five observers using the subjective visual grading analysis (VGA and assessed by proportional odds modeling. Objective quality assessment (contrast, noise, and the contrast-to-noise ratio [CNR] was analyzed with linear mixed effects modeling on log-transformed data. The need for ethical approval was waived by the local ethics committee as the study only involved anonymously collected clinical data. Results VGA showed significant improvements in sharpness by comparing FBP with ASIR, resulting in odds ratios of 1.54 for 30% ASIR and 1.89 for 60% ASIR (P = 0.004. The objective measures showed significant differences between FBP and 60% ASIR (P < 0.0001 for noise, with an estimated ratio of 0.82, and for CNR, with an estimated ratio of 1.26. Conclusion ASIR improved the subjective image quality of parameter sharpness and, objectively, reduced noise and increased CNR.
Algorithms for Reconstruction of Undersampled Atomic Force Microscopy Images Supplementary Material
DEFF Research Database (Denmark)
2017-01-01
Two Jupyter Notebooks showcasing reconstructions of undersampled atomic force microscopy images. The reconstructions were obtained using a variety of interpolation and reconstruction methods.......Two Jupyter Notebooks showcasing reconstructions of undersampled atomic force microscopy images. The reconstructions were obtained using a variety of interpolation and reconstruction methods....
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Krohn, Thomas [RWTH University Hospital Aachen, Department of Nuclear Medicine, Aachen (Germany); Ulm University, Department of Nuclear Medicine, Ulm (Germany); Birmes, Anita; Winz, Oliver H.; Drude, Natascha I. [RWTH University Hospital Aachen, Department of Nuclear Medicine, Aachen (Germany); Mottaghy, Felix M. [RWTH University Hospital Aachen, Department of Nuclear Medicine, Aachen (Germany); Maastricht UMC+, Department of Nuclear Medicine, Maastricht (Netherlands); Behrendt, Florian F. [RWTH University Hospital Aachen, Department of Nuclear Medicine, Aachen (Germany); Radiology Institute ' ' Aachen Land' ' , Wuerselen (Germany); Verburg, Frederik A. [RWTH University Hospital Aachen, Department of Nuclear Medicine, Aachen (Germany); University Hospital Giessen and Marburg, Department of Nuclear Medicine, Marburg (Germany)
2017-04-15
To investigate whether the numbers of lymph node metastases and coeliac ganglia delineated on [{sup 68}Ga]PSMA-HBED-CC PET/CT scans differ among datasets generated using different reconstruction algorithms. Data were constructed using the BLOB-OS-TF, BLOB-OS and 3D-RAMLA algorithms. All reconstructions were assessed by two nuclear medicine physicians for the number of pelvic/paraaortal lymph node metastases as well the number of coeliac ganglia. Standardized uptake values (SUV) were also calculated in different regions. At least one [{sup 68}Ga]PSMA-HBED-CC PET/CT-positive pelvic or paraaortal lymph node metastasis was found in 49 and 35 patients using the BLOB-OS-TF algorithm, in 42 and 33 patients using the BLOB-OS algorithm, and in 41 and 31 patients using the 3D-RAMLA algorithm, respectively, and a positive ganglion was found in 92, 59 and 24 of 100 patients using the three algorithms, respectively. Quantitatively, the SUVmean and SUVmax were significantly higher with the BLOB-OS algorithm than with either the BLOB-OS-TF or the 3D-RAMLA algorithm in all measured regions (p < 0.001 for all comparisons). The differences between the SUVs with the BLOB-OS-TF- and 3D-RAMLA algorithms were not significant in the aorta (SUVmean, p = 0.93; SUVmax, p = 0.97) but were significant in all other regions (p < 0.001 in all cases). The SUVmean ganglion/gluteus ratio was significantly higher with the BLOB-OS-TF algorithm than with either the BLOB-OS or the 3D-RAMLA algorithm and was significantly higher with the BLOB-OS than with the 3D-RAMLA algorithm (p < 0.001 in all cases). The results of [{sup 68}Ga]PSMA-HBED-CC PET/CT are affected by the reconstruction algorithm used. The highest number of lesions and physiological structures will be visualized using a modern algorithm employing time-of-flight information. (orig.)
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Logsdon Benjamin A
2012-04-01
Full Text Available Abstract Background We propose a novel variational Bayes network reconstruction algorithm to extract the most relevant disease factors from high-throughput genomic data-sets. Our algorithm is the only scalable method for regularized network recovery that employs Bayesian model averaging and that can internally estimate an appropriate level of sparsity to ensure few false positives enter the model without the need for cross-validation or a model selection criterion. We use our algorithm to characterize the effect of genetic markers and liver gene expression traits on mouse obesity related phenotypes, including weight, cholesterol, glucose, and free fatty acid levels, in an experiment previously used for discovery and validation of network connections: an F2 intercross between the C57BL/6 J and C3H/HeJ mouse strains, where apolipoprotein E is null on the background. Results We identified eleven genes, Gch1, Zfp69, Dlgap1, Gna14, Yy1, Gabarapl1, Folr2, Fdft1, Cnr2, Slc24a3, and Ccl19, and a quantitative trait locus directly connected to weight, glucose, cholesterol, or free fatty acid levels in our network. None of these genes were identified by other network analyses of this mouse intercross data-set, but all have been previously associated with obesity or related pathologies in independent studies. In addition, through both simulations and data analysis we demonstrate that our algorithm achieves superior performance in terms of power and type I error control than other network recovery algorithms that use the lasso and have bounds on type I error control. Conclusions Our final network contains 118 previously associated and novel genes affecting weight, cholesterol, glucose, and free fatty acid levels that are excellent obesity risk candidates.
Design algorithm for generatrix profile of cylindrical crowned rollers
Directory of Open Access Journals (Sweden)
Creţu Spiridon
2017-01-01
Full Text Available The cross-section of roller profile controls the pressure distribution in the contact area and radically affects the roller bearings basic dynamic load rating and rating lives. Today the most used roller profiles are the logarithmic profile and cylindrical-crowned (ZB profile. The logarithmic profile has a continuous evolution with no discontinuities till the intersection with the end fillet while ZB profile has two more discontinuities at the intersections points between the crowning circle and straight line generatrix. Using a semianalytical method, a numerical study has been carried out to find the optimum ZB profile for rollers incorporated in cylindrical rollers bearings. The basic reference rating life (L10_r has been used as optimization criterion.
Sun, J; Wang, T; Li, Z D; Shao, Y; Zhang, Z Y; Feng, H; Zou, D H; Chen, Y J
2017-12-01
To reconstruct a vehicle-bicycle-cyclist crash accident and analyse the injuries using 3D laser scanning technology, multi-rigid-body dynamics and optimized genetic algorithm, and to provide biomechanical basis for the forensic identification of death cause. The vehicle was measured by 3D laser scanning technology. The multi-rigid-body models of cyclist, bicycle and vehicle were developed based on the measurements. The value range of optimal variables was set. A multi-objective genetic algorithm and the nondominated sorting genetic algorithm were used to find the optimal solutions, which were compared to the record of the surveillance video around the accident scene. The reconstruction result of laser scanning on vehicle was satisfactory. In the optimal solutions found by optimization method of genetic algorithm, the dynamical behaviours of dummy, bicycle and vehicle corresponded to that recorded by the surveillance video. The injury parameters of dummy were consistent with the situation and position of the real injuries on the cyclist in accident. The motion status before accident, damage process by crash and mechanical analysis on the injury of the victim can be reconstructed using 3D laser scanning technology, multi-rigid-body dynamics and optimized genetic algorithm, which have application value in the identification of injury manner and analysis of death cause in traffic accidents.
Directory of Open Access Journals (Sweden)
Song Chunsheng
2017-01-01
Full Text Available The adhesive-bonded joint of carbon fiber–reinforced plastic is one of the core components in aircraft structure design. It is an effective guarantee for the safety and reliability of the aerospace aircraft structure to use effective methods for monitoring and early warning of internal failure. In this article, the mapping relation model between the strain profiles of the adherend of the carbon fiber–reinforced plastic single-lap adhesive joint and the stiffness degradation evolution of adhesive layer was achieved by finite element software ABAQUS. The fiber Bragg grating was embedded in the adherend between the first and second layers at the end of the adhesive layer to calculate the reflection spectrum of fiber Bragg grating sensor region with improved T-matrix method for reconstruction of the adherend strain profile of fiber Bragg grating sensing area with the help of genetic algorithm. According to the reconstruction results, the maximum error between the ideal and reconstructed strain profile under different tension loads did not exceed 7.43%, showing a good coincidence degree. The monitoring method of the stiffness degradation evolution of adhesive layer of the carbon fiber–reinforced plastic single-lap joint based on the reconstruction of the adherend strain profile of fiber Bragg grating sensing area thus was figured out.
Jiang, Yanzheng; Sabbagh, Steven; Park, Youngseok; Ahn, Jaeheon; Ko, Jinseok
2017-10-01
High fidelity kinetic equilibrium reconstructions are an essential requirement for accurate stability and disruption prediction analyses to support continuous operation of high beta KSTAR tokamak plasmas. The present work significantly expands our past magnetics-only equilibrium reconstruction capability. The present kinetic equilibrium reconstructions include Thomson scattering (TS) data, charge exchange spectroscopy (CES) data, and allowance for fast particle pressure in addition to external magnetics and shaping field current data, and inclusion of vacuum vessel and passive plate currents following a ``partial kinetic'' approach used successfully in other devices. In addition, up to 25 channels of Motional Stark Effect (MSE) data are used to constrain the local magnetic field pitch angle to produce reliable evaluation of the safety factor profile. The ramifications of the inclusion of the kinetic profiles and MSE data are examined in the context of plasma stability evaluation, and parameters and analysis used for disruption event characterization and forecasting (DECAF). Supported by US DOE Grant DE-SC0016614.
A comparison of semiglobal and local dense matching algorithms for surface reconstruction
Dall'Asta, E.; Roncella, R.
2014-06-01
Encouraged by the growing interest in automatic 3D image-based reconstruction, the development and improvement of robust stereo matching techniques is one of the most investigated research topic of the last years in photogrammetry and computer vision. The paper is focused on the comparison of some stereo matching algorithms (local and global) which are very popular both in photogrammetry and computer vision. In particular, the Semi-Global Matching (SGM), which realizes a pixel-wise matching and relies on the application of consistency constraints during the matching cost aggregation, will be discussed. The results of some tests performed on real and simulated stereo image datasets, evaluating in particular the accuracy of the obtained digital surface models, will be presented. Several algorithms and different implementation are considered in the comparison, using freeware software codes like MICMAC and OpenCV, commercial software (e.g. Agisoft PhotoScan) and proprietary codes implementing Least Square e Semi-Global Matching algorithms. The comparisons will also consider the completeness and the level of detail within fine structures, and the reliability and repeatability of the obtainable data.
A comparison of semiglobal and local dense matching algorithms for surface reconstruction
Directory of Open Access Journals (Sweden)
E. Dall'Asta
2014-06-01
Full Text Available Encouraged by the growing interest in automatic 3D image-based reconstruction, the development and improvement of robust stereo matching techniques is one of the most investigated research topic of the last years in photogrammetry and computer vision. The paper is focused on the comparison of some stereo matching algorithms (local and global which are very popular both in photogrammetry and computer vision. In particular, the Semi-Global Matching (SGM, which realizes a pixel-wise matching and relies on the application of consistency constraints during the matching cost aggregation, will be discussed. The results of some tests performed on real and simulated stereo image datasets, evaluating in particular the accuracy of the obtained digital surface models, will be presented. Several algorithms and different implementation are considered in the comparison, using freeware software codes like MICMAC and OpenCV, commercial software (e.g. Agisoft PhotoScan and proprietary codes implementing Least Square e Semi-Global Matching algorithms. The comparisons will also consider the completeness and the level of detail within fine structures, and the reliability and repeatability of the obtainable data.
CSIR Research Space (South Africa)
Ngwangwa, HM
2008-07-01
Full Text Available on the road and driver to assess the integrity of road and vehicle infrastructure. In this paper, vehicle vibration data are applied to an artificial neural network to reconstruct the corresponding road surface profiles. The results show that the technique...
General Video Game Evaluation Using Relative Algorithm Performance Profiles
DEFF Research Database (Denmark)
Nielsen, Thorbjørn; Barros, Gabriella; Togelius, Julian
2015-01-01
In order to generate complete games through evolution we need generic and reliably evaluation functions for games. It has been suggested that game quality could be characterised through playing a game with different controllers and comparing their performance. This paper explores that idea through...... investigating the relative performance of different general game-playing algorithms. Seven game-playing algorithms was used to play several hand-designed, mutated and randomly generated VGDL game descriptions. Results discussed appear to support the conjecture that well-designed games have, in average, a higher...... performance difference between better and worse game-playing algorithms....
Dual-mode capacitance and gamma-ray tomography using the Landweber reconstruction algorithm
Hjertaker, B. T.; Maad, R.; Johansen, G. A.
2011-10-01
A dual-mode tomography system based on electrical capacitance and gamma-ray tomography has been developed at the Department of Physics and Technology, University of Bergen. The objective of the dual-mode tomograph is to acquire cross-sectional images, i.e. tomograms, of hydrocarbon flow comprising oil, water and gas constituents. The capacitance tomograph utilizes an eight-electrode sensor set-up mounted around a PVC pipe structure which is sensitive to the electrical permittivity ɛr of the fluid. By using the capacitance tomograph, the produced water constituent can be separated from the gas and crude oil constituents, assuming that the liquid phase is oil continuous. The high-speed gamma-ray tomograph comprises five 500 mCi 241Am gamma-ray sources, each at a principal energy of 59.5 keV, which corresponds to five detector modules, each consisting of 17 CdZnTe detectors mounted around the same pipe section as the capacitance sensor. The gamma-ray tomograph discriminates between the gas and the liquid phase, since these have different photon attenuation properties. As a result, the gamma-ray tomograph is able to distinguish the gas phase from the liquid phase of the hydrocarbon flow. Consequently, the dual-mode capacitance and gamma-ray tomography set-up is able to distinguish the oil, water and gas constituents of hydrocarbon flow. This paper presents the work that has been performed related to static characterization of the dual-mode tomograph using the Landweber reconstruction algorithm on polypropylene phantoms. The objective of the work has been to quantitatively evaluate the static imaging performance of the dual-mode tomograph with respect to relative spatial measurement errors, i.e. root mean square errors of the reconstructed tomograms compared to that of the phantom. The work shows that dual-mode tomography using electrical capacitance and gamma-ray sensors is feasible on hydrocarbon flow components using a pixel-to-pixel fusion procedure on separately
Li, Tingting; Zhang, Yonggao; Wang, Yadong; Gao, Jianbo; Jiang, Yan
2016-01-01
Abstract The aim of the study was to investigate the image quality of low-dose CT images with different reconstruction algorithms including filtered back projection (FBP), hybrid iterative reconstruction (HIR), and iterative model reconstruction (IMR) algorithms by comparison of routine dose images with FBP reconstruction, in patients with malignant obstructive tracheobronchial diseases. In total, 60 patients (59 ± 9.3 years, 37 males) with airway stent who are randomly assigned into 2 groups (routine-dose [RD] and low-dose [LD] group, 30 for each) underwent chest CT on a 256-slice CT (RD-group 120 kV, 250 mAs, LD-group 120 kV, 120 mAs). Images were reconstructed with filtered back projection (FBP) algorithm in the RD group, whereas with FBP, HIR and IMR algorithms in the LD group. Effective radiation dose of both groups was recorded. Image-quality assessment was performed by 2 radiologists according to structure demarcation near stents, artifacts, noise, and diagnostic confidence using a 5-point scale (1 [poor] to 5 [excellent]). Image noise and CNR were measured. The effective radiation dose of LD group was reduced 52.7% compared with the RD group (10.8 mSv ± 0.58 vs 5.1 mSv ± 0.26, P = 0.00). LD-IMR images enabled lowest image noise and best subjective image quality scores of all 4 indices, when compared with RD images reconstructed with FBP (RD-FBP) images (all P reconstructed with and with HIR (LD-HIR) images enabled higher score in subjective image quality of artifacts (P CT by comparison of routine dose images reconstructed with FBP. Meanwhile, IMR allows further image quality improvement than HIR. PMID:27684818
Pochanin, Gennadiy P.; Poyedinchuk, Anatoliy Y.; Varianytsia-Roshchupkina, Liudmyla A.; Pochanina, Iryna Ye.
2016-04-01
Results of this research are intended to use at GPR investigations of layered media (for example, at roads' inspection) for the processing of collected data and reconstruction of dependence of permittivity on the depth. Recently, an antenna system with a vertical differential configuration of receiving module (Patent UA81652) for GPR was suggested and developed The main advantage of the differential antennas in comparison with bistatic antennas is a high electromagnetic decoupling between the transmitting and receiving modules. The new vertical differential configuration has an additional advantage because it allows collecting GPR data reflected by layered media without any losses of information about these layers [1] and, potentially, it is a more accurate instrument for the layers thickness measurements [2]. The developed antenna system is tested in practice with the GPR at asphalt thickness measurements [3] and shown an accuracy which is better than 0.5 cm. Since this antenna system is good for sounding from above the surface (air coupled technique), the mobile laboratory was equipped with the developed GPR [3]. In order to process big set of GPR data that collected during probing at long routes of the roads, for the data processing it was tested new algorithm of the inverse problem solution. It uses a fast algorithm for calculation of electromagnetic wave diffraction by non-uniform anisotropic layers [4]. The algorithm is based on constructing a special case solution to the Riccati equation for the Cauchy problem and enables a qualitative description of the wave diffraction by the electromagnetic structure of the type within a unitary framework. At this stage as initial data we used synthetic GPR data that were obtained as results of the FDTD simulation of the problem of UWB electromagnetic impulse diffraction on layered media. Differential and bistatic antenna configurations were tested at several different profiles of permittivity. Meanings of permittivity of
MO-FG-204-04: How Iterative Reconstruction Algorithms Affect the NPS of CT Images
Energy Technology Data Exchange (ETDEWEB)
Li, G; Liu, X; Dodge, C; Jensen, C; Rong, J [UT MD Anderson Cancer Center, Houston, TX (United States)
2015-06-15
Purpose: To evaluate how the third generation model based iterative reconstruction (MBIR) compares with filtered back-projection (FBP), adaptive statistical iterative reconstruction (ASiR), and the second generation MBIR based on noise power spectrum (NPS) analysis over a wide range of clinically applicable dose levels. Methods: The Catphan 600 CTP515 module, surrounded by an oval, fat-equivalent ring to mimic patient size/shape, was scanned on a GE HD750 CT scanner at 1, 2, 3, 6, 12 and 19mGy CTDIvol levels with typical patient scan parameters: 120kVp, 0.8s, 40mm beam width, large SFOV, 0.984 pitch and reconstructed thickness 2.5mm (VEO3.0: Abd/Pelvis with Texture and NR05). At each CTDIvol level, 10 repeated scans were acquired for achieving sufficient data sampling. The images were reconstructed using Standard kernel with FBP; 20%, 40% and 70% ASiR; and two versions of MBIR (VEO2.0 and 3.0). For evaluating the effect of the ROI spatial location to the Result of NPS, 4 ROI groups were categorized based on their distances from the center of the phantom. Results: VEO3.0 performed inferiorly comparing to VEO2.0 over all dose levels. On the other hand, at low dose levels (less than 3 mGy), it clearly outperformed ASiR and FBP, in NPS values. Therefore, the lower the dose level, the relative performance of MBIR improves. However, the shapes of the NPS show substantial differences in horizontal and vertical sampling dimensions. These differences may determine the characteristics of the noise/texture features in images, and hence, play an important role in image interpretation. Conclusion: The third generation MBIR did not improve over the second generation MBIR in term of NPS analysis. The overall performance of both versions of MBIR improved as compared to other reconstruction algorithms when dose was reduced. The shapes of the NPS curves provided additional value for future characterization of the image noise/texture features.
Park, Yeonok; Cho, Heemoon; Je, Uikyu; Cho, Hyosung; Park, Chulkyu; Lim, Hyunwoo; Kim, Kyuseok; Kim, Guna; Park, Soyoung; Woo, Taeho; Choi, Sungil
2015-12-01
In this work, we have developed a prototype digital breast tomosynthesis (DBT) system which mainly consists of an x-ray generator (28 kVp, 7 mA s), a CMOS-type flat-panel detector (70-μm pixel size, 230.5×339 mm2 active area), and a rotational arm to move the x-ray generator in an arc. We employed a compressed-sensing (CS)-based reconstruction algorithm, rather than a common filtered-backprojection (FBP) one, for more accurate DBT reconstruction. Here the CS is a state-of-the-art mathematical theory for solving the inverse problems, which exploits the sparsity of the image with substantially high accuracy. We evaluated the reconstruction quality in terms of the detectability, the contrast-to-noise ratio (CNR), and the slice-sensitive profile (SSP) by using the mammographic accreditation phantom (Model 015, CIRS Inc.) and compared it to the FBP-based quality. The CS-based algorithm yielded much better image quality, preserving superior image homogeneity, edge sharpening, and cross-plane resolution, compared to the FBP-based one.
Kollár, László E.; Lucas, Gary P.; Meng, Yiqing
2015-05-01
An analytical method that was developed formerly for the reconstruction of velocity profiles in asymmetric flows is improved to be applicable for both axisymmetric and asymmetric flows. The method is implemented in Matlab, and predicts the velocity profile from measured electrical potential distributions obtained around the boundary of a multi-electrode electromagnetic flow meter (EMFM). Potential distributions are measured in uniform and non-uniform magnetic fields, and the velocity is assumed as a sum of axisymmetric and polynomial components. The procedure requires three steps. First, the discrete Fourier transform (DFT) is applied to the potential distribution obtained in a uniform magnetic field. Since the direction of polynomial components of order greater than two in the plane of the pipe cross section is not unique multiple solutions exist, therefore all possible polynomial velocity profiles are determined. Then, the DFT is applied to the potential distribution obtained in a specific non-uniform magnetic field, and used to calculate the exponent in a power-law representation of the axisymmetric component. Finally, the potential distribution in the non-uniform magnetic field is calculated for all of the possible velocity profile solutions using weight values, and the velocity profile with the calculated potential distribution which is closest to the measured one provides the optimum solution. The method is validated by reconstructing two quartic velocity profiles, one of which includes an axisymmetric component. The potential distributions are obtained from simulations using COMSOL Multiphysics where a model of the EMFM is constructed. The reconstructed velocity profiles show satisfactory agreement with the input velocity profiles. The main benefits of the method described in this paper are that it provides a velocity distribution in the circular cross section of a pipe as an analytical function of the spatial coordinates which is suitable for both
Oluwadare, Oluwatosin; Zhang, Yuxiang; Cheng, Jianlin
2018-02-23
The development of chromosomal conformation capture techniques, particularly, the Hi-C technique, has made the analysis and study of the spatial conformation of a genome an important topic in bioinformatics and computational biology. Aided by high-throughput next generation sequencing techniques, the Hi-C technique can generate genome-wide, large-scale intra- and inter-chromosomal interaction data capable of describing in details the spatial interactions within a genome. These data can be used to reconstruct 3D structures of chromosomes that can be used to study DNA replication, gene regulation, genome interaction, genome folding, and genome function. Here, we introduce a maximum likelihood algorithm called 3DMax to construct the 3D structure of a chromosome from Hi-C data. 3DMax employs a maximum likelihood approach to infer the 3D structures of a chromosome, while automatically re-estimating the conversion factor (α) for converting Interaction Frequency (IF) to distance. Our results show that the models generated by 3DMax from a simulated Hi-C dataset match the true models better than most of the existing methods. 3DMax is more robust to structural variability and noise. Compared on a real Hi-C dataset, 3DMax constructs chromosomal models that fit the data better than most methods, and it is faster than all other methods. The models reconstructed by 3DMax were consistent with fluorescent in situ hybridization (FISH) experiments and existing knowledge about the organization of human chromosomes, such as chromosome compartmentalization. 3DMax is an effective approach to reconstructing 3D chromosomal models. The results, and the models generated for the simulated and real Hi-C datasets are available here: http://sysbio.rnet.missouri.edu/bdm_download/3DMax/ . The source code is available here: https://github.com/BDM-Lab/3DMax . A short video demonstrating how to use 3DMax can be found here: https://youtu.be/ehQUFWoHwfo .
Energy Technology Data Exchange (ETDEWEB)
Almansouri, Hani [Purdue University; Johnson, Christi R [ORNL; Clayton, Dwight A [ORNL; Polsky, Yarom [ORNL; Bouman, Charlie [Purdue University; Santos-Villalobos, Hector J [ORNL
2017-01-01
All commercial nuclear power plants (NPPs) in the United States contain concrete structures. These structures provide important foundation, support, shielding, and containment functions. Identification and management of aging and the degradation of concrete structures is fundamental to the proposed long-term operation of NPPs. Concrete structures in NPPs are often inaccessible and contain large volumes of massively thick concrete. While acoustic imaging using the synthetic aperture focusing technique (SAFT) works adequately well for thin specimens of concrete such as concrete transportation structures, enhancements are needed for heavily reinforced, thick concrete. We argue that image reconstruction quality for acoustic imaging in thick concrete could be improved with Model-Based Iterative Reconstruction (MBIR) techniques. MBIR works by designing a probabilistic model for the measurements (forward model) and a probabilistic model for the object (prior model). Both models are used to formulate an objective function (cost function). The final step in MBIR is to optimize the cost function. Previously, we have demonstrated a first implementation of MBIR for an ultrasonic transducer array system. The original forward model has been upgraded to account for direct arrival signal. Updates to the forward model will be documented and the new algorithm will be assessed with synthetic and empirical samples.
Fast and Easy 3D Reconstruction with the Help of Geometric Constraints and Genetic Algorithms
Annich, Afafe; El Abderrahmani, Abdellatif; Satori, Khalid
2017-09-01
The purpose of the work presented in this paper is to describe new method of 3D reconstruction from one or more uncalibrated images. This method is based on two important concepts: geometric constraints and genetic algorithms (GAs). At first, we are going to discuss the combination between bundle adjustment and GAs that we have proposed in order to improve 3D reconstruction efficiency and success. We used GAs in order to improve fitness quality of initial values that are used in the optimization problem. It will increase surely convergence rate. Extracted geometric constraints are used first to obtain an estimated value of focal length that helps us in the initialization step. Matching homologous points and constraints is used to estimate the 3D model. In fact, our new method gives us a lot of advantages: reducing the estimated parameter number in optimization step, decreasing used image number, winning time and stabilizing good quality of 3D results. At the end, without any prior information about our 3D scene, we obtain an accurate calibration of the cameras, and a realistic 3D model that strictly respects the geometric constraints defined before in an easy way. Various data and examples will be used to highlight the efficiency and competitiveness of our present approach.
3D PET image reconstruction based on Maximum Likelihood Estimation Method (MLEM) algorithm
Słomski, Artur; Bednarski, Tomasz; Białas, Piotr; Czerwiński, Eryk; Kapłon, Łukasz; Kochanowski, Andrzej; Korcyl, Grzegorz; Kowal, Jakub; Kowalski, Paweł; Kozik, Tomasz; Krzemień, Wojciech; Molenda, Marcin; Moskal, Paweł; Niedźwiecki, Szymon; Pałka, Marek; Pawlik, Monika; Raczyński, Lech; Salabura, Piotr; Gupta-Sharma, Neha; Silarski, Michał; Smyrski, Jerzy; Strzelecki, Adam; Wiślicki, Wojciech; Zieliński, Marcin; Zoń, Natalia
2015-01-01
Positron emission tomographs (PET) do not measure an image directly. Instead, they measure at the boundary of the field-of-view (FOV) of PET tomograph a sinogram that consists of measurements of the sums of all the counts along the lines connecting two detectors. As there is a multitude of detectors build-in typical PET tomograph structure, there are many possible detector pairs that pertain to the measurement. The problem is how to turn this measurement into an image (this is called imaging). Decisive improvement in PET image quality was reached with the introduction of iterative reconstruction techniques. This stage was reached already twenty years ago (with the advent of new powerful computing processors). However, three dimensional (3D) imaging remains still a challenge. The purpose of the image reconstruction algorithm is to process this imperfect count data for a large number (many millions) of lines-of-responce (LOR) and millions of detected photons to produce an image showing the distribution of the l...
Almansouri, Hani; Johnson, Christi; Clayton, Dwight; Polsky, Yarom; Bouman, Charles; Santos-Villalobos, Hector
2017-02-01
All commercial nuclear power plants (NPPs) in the United States contain concrete structures. These structures provide important foundation, support, shielding, and containment functions. Identification and management of aging and the degradation of concrete structures is fundamental to the proposed long-term operation of NPPs. Concrete structures in NPPs are often inaccessible and contain large volumes of massively thick concrete. While acoustic imaging using the synthetic aperture focusing technique (SAFT) works adequately well for thin specimens of concrete such as concrete transportation structures, enhancements are needed for heavily reinforced, thick concrete. We argue that image reconstruction quality for acoustic imaging in thick concrete could be improved with Model-Based Iterative Reconstruction (MBIR) techniques. MBIR works by designing a probabilistic model for the measurements (forward model) and a probabilistic model for the object (prior model). Both models are used to formulate an objective function (cost function). The final step in MBIR is to optimize the cost function. Previously, we have demonstrated a first implementation of MBIR for an ultrasonic transducer array system. The original forward model has been upgraded to account for direct arrival signal. Updates to the forward model will be documented and the new algorithm will be assessed with synthetic and empirical samples.
Assist feature printability prediction by 3-D resist profile reconstruction
Zheng, Xin; Huang, Jensheng; Chin, Fook; Kazarian, Aram; Kuo, Chun-Chieh
2012-06-01
properties may then be used to optimize the printability vs. efficacy of an SRAF either prior to or during an Optical Proximity Correction (OPC) run. The process models that are used during OPC have never been able to reliably predict which SRAFs will print. This appears to be due to the fact that OPC process models are generally created using data that does not include printed subresolution patterns. An enhancement to compact modeling capability to predict Assist Features (AF) printability is developed and discussed. A hypsometric map representing 3-D resist profile was built by applying a first principle approximation to estimate the "energy loss" from the resist top to bottom. Such a 3-D resist profile is an extrapolation of a well calibrated traditional OPC model without any additional information. Assist features are detected at either top of resist (dark field) or bottom of resist (bright field). Such detection can be done by just extracting top or bottom resist models from our 3-D resist model. There is no measurement of assist features needed when we build AF but it can be included if interested but focusing on resist calibration to account for both exposure dosage and focus change sensitivities. This approach significantly increases resist model's capability for predicting printed SRAF accuracy. And we don't need to calibrate an SRAF model in addition to the OPC model. Without increase in computation time, this compact model can draw assist feature contour with real placement and size at any vertical plane. The result is compared and validated with 3-D rigorous modeling as well as SEM images. Since this method does not change any form of compact modeling, it can be integrated into current MBAF solutions without any additional work.
Energy Technology Data Exchange (ETDEWEB)
Cui, Xiaoming, E-mail: mmayzy2008@126.com; Li, Tao, E-mail: litaofeivip@163.com; Li, Xin, E-mail: lx0803@sina.com.cn; Zhou, Weihua, E-mail: wangxue0606@gmail.com
2015-05-15
Highlights: • High-resolution scan mode is appropriate for imaging coronary stent. • HD-detail reconstruction algorithm is stent-dedicated kernel. • The intrastent lumen visibility also depends on stent diameter and material. - Abstract: Objective: The aim of this study was to evaluate the in vivo performance of four image reconstruction algorithms in a high-definition CT (HDCT) scanner with improved spatial resolution for the evaluation of coronary artery stents and intrastent lumina. Materials and methods: Thirty-nine consecutive patients with a total of 71 implanted coronary stents underwent coronary CT angiography (CCTA) on a HDCT (Discovery CT 750 HD; GE Healthcare) with the high-resolution scanning mode. Four different reconstruction algorithms (HD-stand, HD-detail; HD-stand-plus; HD-detail-plus) were applied to reconstruct the stented coronary arteries. Image quality for stent characterization was assessed. Image noise and intrastent luminal diameter were measured. The relationship between the measurement of inner stent diameter (ISD) and the true stent diameter (TSD) and stent type were analysed. Results: The stent-dedicated kernel (HD-detail) offered the highest percentage (53.5%) of good image quality for stent characterization and the highest ratio (68.0 ± 8.4%) of visible stent lumen/true stent lumen for luminal diameter measurement at the expense of an increased overall image noise. The Pearson correlation coefficient between the ISD and TSD measurement and spearman correlation coefficient between the ISD measurement and stent type were 0.83 and 0.48, respectively. Conclusions: Compared with standard reconstruction algorithms, high-definition CT imaging technique with dedicated high-resolution reconstruction algorithm provides more accurate stent characterization and intrastent luminal diameter measurement.
Chen, Yihang; Xiao, Chijie; Yang, Xiaoyi; Wang, Tianbo; Xu, Tianchao; Yu, Yi; Xu, Min; Wang, Long; Lin, Chen; Wang, Xiaogang
2017-10-01
The Laser-driven Ion beam trace probe (LITP) is a new diagnostic method for measuring poloidal magnetic field (Bp) and radial electric field (Er) in tokamaks. LITP injects a laser-driven ion beam into the tokamak, and Bp and Er profiles can be reconstructed using tomography methods. A reconstruction code has been developed to validate the LITP theory, and both 2D reconstruction of Bp and simultaneous reconstruction of Bp and Er have been attained. To reconstruct from experimental data with noise, Maximum Entropy and Gaussian-Bayesian tomography methods were applied and improved according to the characteristics of the LITP problem. With these improved methods, a reconstruction error level below 15% has been attained with a data noise level of 10%. These methods will be further tested and applied in the following LITP experiments. Supported by the ITER-CHINA program 2015GB120001, CHINA MOST under 2012YQ030142 and National Natural Science Foundation Abstract of China under 11575014 and 11375053.
A retrieval algorithm of hydrometer profile for submillimeter-wave radiometer
Liu, Yuli; Buehler, Stefan; Liu, Heguang
2017-04-01
Vertical profiles of particle microphysics perform vital functions for the estimation of climatic feedback. This paper proposes a new algorithm to retrieve the profile of the parameters of the hydrometeor(i.e., ice, snow, rain, liquid cloud, graupel) based on passive submillimeter-wave measurements. These parameters include water content and particle size. The first part of the algorithm builds the database and retrieves the integrated quantities. Database is built up by Atmospheric Radiative Transfer Simulator(ARTS), which uses atmosphere data to simulate the corresponding brightness temperature. Neural network, trained by the precalculated database, is developed to retrieve the water path for each type of particles. The second part of the algorithm analyses the statistical relationship between water path and vertical parameters profiles. Based on the strong dependence existing between vertical layers in the profiles, Principal Component Analysis(PCA) technique is applied. The third part of the algorithm uses the forward model explicitly to retrieve the hydrometeor profiles. Cost function is calculated in each iteration, and Differential Evolution(DE) algorithm is used to adjust the parameter values during the evolutionary process. The performance of this algorithm is planning to be verified for both simulation database and measurement data, by retrieving profiles in comparison with the initial one. Results show that this algorithm has the ability to retrieve the hydrometeor profiles efficiently. The combination of ARTS and optimization algorithm can get much better results than the commonly used database approach. Meanwhile, the concept that ARTS can be used explicitly in the retrieval process shows great potential in providing solution to other retrieval problems.
Ham, Woonchul; Song, Chulgyu
2017-05-01
In this paper, we propose a new three-dimensional stereo image reconstruction algorithm for a photoacoustic medical imaging system. We also introduce and discuss a new theoretical algorithm by using the physical concept of Radon transform. The main key concept of proposed theoretical algorithm is to evaluate the existence possibility of the acoustic source within a searching region by using the geometric distance between each sensor element of acoustic detector and the corresponding searching region denoted by grid. We derive the mathematical equation for the magnitude of the existence possibility which can be used for implementing a new proposed algorithm. We handle and derive mathematical equations of proposed algorithm for the one-dimensional sensing array case as well as two dimensional sensing array case too. A mathematical k-wave simulation data are used for comparing the image quality of the proposed algorithm with that of general conventional algorithm in which the FFT should be necessarily used. From the k-wave Matlab simulation results, we can prove the effectiveness of the proposed reconstruction algorithm.
Feng, Lu; Fedrigo, Enrico; Béchet, Clémentine; Brunner, Elisabeth; Pirani, Werther
2012-06-01
The European Southern Observatory (ESO) is studying the next generation giant telescope, called the European Extremely Large Telescope (E-ELT). With a 42 m diameter primary mirror, it is a significant step from currently existing telescopes. Therefore, the E-ELT with its instruments poses new challenges in terms of cost and computational complexity for the control system, including its adaptive optics (AO). Since the conventional matrix-vector multiplication (MVM) method successfully used so far for AO wavefront reconstruction cannot be efficiently scaled to the size of the AO systems on the E-ELT, faster algorithms are needed. Among those recently developed wavefront reconstruction algorithms, three are studied in this paper from the point of view of design, implementation, and absolute speed on three multicore multi-CPU platforms. We focus on a single-conjugate AO system for the E-ELT. The algorithms are the MVM, the Fourier transform reconstructor (FTR), and the fractal iterative method (FRiM). This study enhances the scaling of these algorithms with an increasing number of CPUs involved in the computation. We discuss implementation strategies, depending on various CPU architecture constraints, and we present the first quantitative execution times so far at the E-ELT scale. MVM suffers from a large computational burden, making the current computing platform undersized to reach timings short enough for AO wavefront reconstruction. In our study, the FTR provides currently the fastest reconstruction. FRiM is a recently developed algorithm, and several strategies are investigated and presented here in order to implement it for real-time AO wavefront reconstruction, and to optimize its execution time. The difficulty to parallelize the algorithm in such architecture is enhanced. We also show that FRiM can provide interesting scalability using a sparse matrix approach.
Yasaka, Koichiro; Katsura, Masaki; Hanaoka, Shouhei; Sato, Jiro; Ohtomo, Kuni
2016-03-01
To compare the image quality of high-resolution computed tomography (HRCT) for evaluating lung nodules reconstructed with the new version of model-based iterative reconstruction and spatial resolution preference algorithm (MBIRn) vs. conventional model-based iterative reconstruction (MBIRc) and adaptive statistical iterative reconstruction (ASIR). This retrospective clinical study was approved by our institutional review board and included 70 lung nodules in 58 patients (mean age, 71.2±10.9years; 34 men and 24 women). HRCT of lung nodules were reconstructed using MBIRn, MBIRc and ASIR. Objective image noise was measured by placing the regions of interest on lung parenchyma. Two blinded radiologists performed subjective image analyses. Significant improvements in the following points were observed in MBIRn compared with ASIR (preconstructed with MBIRn provides diagnostically more acceptable images for the detailed analyses of lung nodules compared with MBIRc and ASIR. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
Ozone ProfilE Retrieval Algorithm (OPERA for nadir-looking satellite instruments in the UV–VIS
Directory of Open Access Journals (Sweden)
J. C. A. van Peet
2014-03-01
Full Text Available For the retrieval of the vertical distribution of ozone in the atmosphere the Ozone ProfilE Retrieval Algorithm (OPERA has been further developed. The new version (1.26 of OPERA is capable of retrieving ozone profiles from UV–VIS observations of most nadir-looking satellite instruments like GOME, SCIAMACHY, OMI and GOME-2. The setup of OPERA is described and results are presented for GOME and GOME-2 observations. The retrieved ozone profiles are globally compared to ozone sondes for the years 1997 and 2008. Relative differences between GOME/GOME-2 and ozone sondes are within the limits as specified by the user requirements from the Climate Change Initiative (CCI programme of ESA (20% in the troposphere, 15% in the stratosphere. To demonstrate the performance of the algorithm under extreme circumstances, the 2009 Antarctic ozone hole season was investigated in more detail using GOME-2 ozone profiles and lidar data, which showed an unusual persistence of the vortex over the Río Gallegos observing station (51° S, 69.3° W. By applying OPERA to multiple instruments, a time series of ozone profiles from 1996 to 2013 from a single robust algorithm can be created.
[Cluster ensemble algorithm based on dual neural gas applied to cancer gene expression profiles].
Zhang, Xiaodong; Chen, Hantao
2015-02-01
The microarray technology used in biological and medical research provides a new idea for the diagnosis and treatment of cancer. To find different types of cancer and to classify the cancer samples accurately, we propose a new cluster ensemble framework Dual Neural Gas Cluster Ensemble (DNGCE), which is based on neural gas algorithm, to discover the underlying structure of noisy cancer gene expression profiles. This framework DNGCE applies the neural gas algorithm to perform clustering not only on the sample dimension, but also on the attribute dimension. It also adopts the normalized cut algorithm to partition off the consensus matrix constructed from multiple clustering solutions. We obtained the final accurate results. Experiments on cancer gene expression profiles illustrated that the proposed approach could achieve good performance, as it outperforms the single clustering algorithms and most of the existing approaches in the process of clustering gene expression profiles.
Willemink, M.J.; Takx, R.A.P.; Jong, P.A. de; Budde, R.P.; Bleys, R.L.; Das, M.; Wildberger, J.E.; Prokop, M.; Buls, N.; Mey, J. de; Schilham, A.M.; Leiner, T.
2014-01-01
o analyse the effects of radiation dose reduction and iterative reconstruction (IR) algorithms on coronary calcium scoring (CCS).Fifteen ex vivo human hearts were examined in an anthropomorphic chest phantom using computed tomography (CT) systems from four vendors and examined at four dose levels
Willemink, M.J.; Takx, R.A.P.; Jong, P.A. de; Budde, R.P.; Bleys, R.L.; Das, M.; Wildberger, J.E.; Prokop, M.; Buls, N.; Mey, J. de; Schilham, A.M.; Leiner, T.
2014-01-01
To analyse the effects of radiation dose reduction and iterative reconstruction (IR) algorithms on coronary calcium scoring (CCS).Fifteen ex vivo human hearts were examined in an anthropomorphic chest phantom using computed tomography (CT) systems from four vendors and examined at four dose levels
Gaitanis, Anastasios; Kontaxakis, George; Spyrou, George; Panayiotakis, George; Tzanakos, George
2010-09-01
We have studied the properties of the pixel updating coefficients in the 2D ordered subsets expectation maximization (OSEM) algorithm for iterative image reconstruction in positron emission tomography, in order to address the problem of image quality degradation-a known property of the technique after a number of iterations. The behavior of the updating coefficients has been extensively analyzed on synthetic coincidence data, using the necessary software tools. The experiments showed that the statistical properties of these coefficients can be correlated with the quality of the reconstructed images as a function of the activity distribution in the source and the number of subsets used. Considering the fact that these properties can be quantified during the reconstruction process of data from real scans where the activity distribution in the source is unknown the results of this study might be useful for the development of a stopping criterion for the OSEM algorithm. Copyright 2010 Elsevier Ireland Ltd. All rights reserved.
Olsson, M-L; Siemund, R; Stålhammar, F; Björkman-Burtscher, I M; Söderberg, M
2013-01-01
Objective: To evaluate the image quality produced by six different iterative reconstruction (IR) algorithms in four CT systems in the setting of brain CT, using different radiation dose levels and iterative image optimisation levels. Methods: An image quality phantom, supplied with a bone mimicking annulus, was examined using four CT systems from different vendors and four radiation dose levels. Acquisitions were reconstructed using conventional filtered back-projection (FBP), three levels of statistical IR and, when available, a model-based IR algorithm. The evaluated image quality parameters were CT numbers, uniformity, noise, noise-power spectra, low-contrast resolution and spatial resolution. Results: Compared with FBP, noise reduction was achieved by all six IR algorithms at all radiation dose levels, with further improvement seen at higher IR levels. Noise-power spectra revealed changes in noise distribution relative to the FBP for most statistical IR algorithms, especially the two model-based IR algorithms. Compared with FBP, variable degrees of improvements were seen in both objective and subjective low-contrast resolutions for all IR algorithms. Spatial resolution was improved with both model-based IR algorithms and one of the statistical IR algorithms. Conclusion: The four statistical IR algorithms evaluated in the study all improved the general image quality compared with FBP, with improvement seen for most or all evaluated quality criteria. Further improvement was achieved with one of the model-based IR algorithms. Advances in knowledge: The six evaluated IR algorithms all improve the image quality in brain CT but show different strengths and weaknesses. PMID:24049128
Energy Technology Data Exchange (ETDEWEB)
Llacer Martos, S.; Herraiz Lablanca, M. D.; Puchal Ane, R.
2011-07-01
This paper compares the image quality obtained with each of the algorithms is evaluated and its running time, to optimize the choice of algorithm to use taking into account both the quality of the reconstructed image as the time spent on the reconstruction.
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Dikaios, N; Fryer, T D, E-mail: tdf21@wbic.cam.ac.uk [Department of Clinical Neurosciences, Wolfson Brain Imaging Centre, University of Cambridge, Addenbrooke' s Hospital, Hills Road, Cambridge CB2 0QQ (United Kingdom)
2011-03-21
Patient motion during positron emission tomography scans leads to significant resolution loss and image degradation. Motion-compensated image reconstruction (MCIR) algorithms have proven to be reliable correction methods given accurate deformation fields. However, although ordered subsets (OS) are widely used to speed up the convergence, OS-MCIR algorithms are still computationally expensive. This study concentrates on acceleration of OS-MCIR algorithms through two methods: combining OS with motion subsets and use of an initial estimate based on reference gate data. These approaches were compared to two existing OS-MCIR algorithms and post-reconstruction registration using data from the NCAT phantom. The methods were evaluated in terms of noise, lesion bias and contrast-to-noise ratio (CNR). The straightforward combination of motion subsets with projection subsets (OSGEM) produced inferior results (lower CNR, p < 0.01) to existing OS-MCIR algorithms. The addition of a spacer step using data from all gates to OSGEM resulted in an algorithm (SS-OSGEM) that generated images that were statistically consistent with those from existing OS-MCIR algorithms (no significant difference in CNR, p > 0.05) at one third of the computational expense. The use of a reference gate initial estimate (MCDOi) resulted in comparable image quality in terms of bias and CNR (p > 0.05) at half the computational burden. This study indicates that MCDOi and SS-OSGEM in particular are attractive accelerated OS-MCIR approaches.
DEFF Research Database (Denmark)
Enevoldsen, Lotte H; Menashi, Changez A K; Andersen, Ulrik B
2013-01-01
-RR) and for quantitative analysis (FT-FBP, HT-FBP, and HT-RR). The datasets were analyzed using commercially available QGS/QPS software and read by two observers evaluating image quality and clinical interpretation. Image quality was assessed on a 10-cm visual analog scale score. RESULTS: HT imaging was associated......BACKGROUND: Recently introduced iterative reconstruction algorithms with resolution recovery (RR) and noise-reduction technology seem promising for reducing scan time or radiation dose without loss of image quality. However, the relative effects of reduced acquisition time and reconstruction...... with loss of image quality that was compensated for by RR reconstruction. HT imaging was also associated with increasing perfusion defect extents, an effect more pronounced using RR than FBP reconstruction. Compared to standard FT-FBP, HT-RR significantly reduced left ventricular volumes whereas HT...
Directory of Open Access Journals (Sweden)
GRANDIN, P. H.
2014-06-01
Full Text Available Recommendation systems based on collaborative filtering are open by nature, what makes them vulnerable to profile injection attacks that insert biased evaluations in the system database in order to manipulate recommendations. In this paper we evaluate the stability and robustness of collaborative filtering algorithms applied to semantic web services recommendation when submitted to random and segment profile injection attacks. We evaluated four algorithms: (1 IMEAN, that makes predictions using the average of the evaluations received by the target item; (2 UMEAN, that makes predictions using the average of the evaluation made by the target user; (3 an algorithm based on the k-nearest neighbor (k-NN method and (4, an algorithm based on the k-means clustering method.The experiments showed that the UMEAN algorithm is not affected by the attacks and that IMEAN is the most vulnerable of all algorithms tested. Nevertheless, both UMEAN and IMEAN have little practical application due to the low precision of their predictions. Among the algorithms with intermediate tolerance to attacks but with good prediction performance, the algorithm based on k-nn proved to be more robust and stable than the algorithm based on k-means.
Pryor, Alan; Yang, Yongsoo; Rana, Arjun; Gallagher-Jones, Marcus; Zhou, Jihan; Hung Lo, Yuan; Melinte, Georgian; Rodriguez, Jose A.; Miao, Jianwei
2017-07-01
Tomography has made a radical impact on diverse fields ranging from the study of 3D atomic arrangements in matter to the study of human health in medicine. Despite its very diverse applications, the core of tomography remains the same, that is, a mathematical method must be implemented to reconstruct the 3D structure of an object from a number of 2D projections. In many scientific applications, however, the number of projections that can be measured is limited due to geometric constraints, tolerable radiation dose and/or acquisition speed. Thus it becomes an important problem to obtain the best-possible reconstruction from a limited number of projections. Here, we present the mathematical implementation of a tomographic algorithm, termed GENeralized Fourier Iterative REconstruction (GENFIRE). By iterating between real and reciprocal space, GENFIRE searches for a global solution that is concurrently consistent with the measured data and general physical constraints. The algorithm requires minimal human intervention and also incorporates angular refinement to reduce the tilt angle error. We demonstrate that GENFIRE can produce superior results relative to several other popular tomographic reconstruction techniques by numerical simulations, and by experimentally by reconstructing the 3D structure of a porous material and a frozen-hydrated marine cyanobacterium. Equipped with a graphical user interface, GENFIRE is freely available from our website and is expected to find broad applications across different disciplines.
GPS tomography: validation of reconstructed 3-D humidity fields with radiosonde profiles
Directory of Open Access Journals (Sweden)
M. Shangguan
2013-09-01
Full Text Available Water vapor plays an important role in meteorological applications; GeoForschungsZentrum (GFZ therefore developed a tomographic system to derive 3-D distributions of the tropospheric water vapor above Germany using GPS data from about 300 ground stations. Input data for the tomographic reconstructions are generated by the Earth Parameter and Orbit determination System (EPOS software of the GFZ, which provides zenith total delay (ZTD, integrated water vapor (IWV and slant total delay (STD data operationally with a temporal resolution of 2.5 min (STD and 15 min (ZTD, IWV. The water vapor distribution in the atmosphere is derived by tomographic reconstruction techniques. The quality of the solution is dependent on many factors such as the spatial coverage of the atmosphere with slant paths, the spatial distribution of their intersections and the accuracy of the input observations. Independent observations are required to validate the tomographic reconstructions and to get precise information on the accuracy of the derived 3-D water vapor fields. To determine the quality of the GPS tomography, more than 8000 vertical water vapor profiles at 13 German radiosonde stations were used for the comparison. The radiosondes were launched twice a day (at 00:00 UTC and 12:00 UTC in 2007. In this paper, parameters of the entire profiles such as the wet refractivity, and the zenith wet delay have been compared. Before the validation the temporal and spatial distribution of the slant paths, serving as a basis for tomographic reconstruction, as well as their angular distribution were studied. The mean wet refractivity differences between tomography and radiosonde data for all points vary from −1.3 to 0.3, and the root mean square is within the range of 6.5–9. About 32% of 6803 profiles match well, 23% match badly and 45% are difficult to classify as they match only in parts.
GPS tomography. Validation of reconstructed 3-D humidity fields with radiosonde profiles
Energy Technology Data Exchange (ETDEWEB)
Shangguan, M.; Bender, M.; Ramatschi, M.; Dick, G.; Wickert, J. [Helmholtz Centre Potsdam, German Research Centre for Geosciences (GFZ), Potsdam (Germany); Raabe, A. [Leipzig Institute for Meteorology (LIM), Leipzig (Germany); Galas, R. [Technische Univ. Berlin (Germany). Dept. for Geodesy and Geoinformation Sciences
2013-11-01
Water vapor plays an important role in meteorological applications; GeoForschungsZentrum (GFZ) therefore developed a tomographic system to derive 3-D distributions of the tropospheric water vapor above Germany using GPS data from about 300 ground stations. Input data for the tomographic reconstructions are generated by the Earth Parameter and Orbit determination System (EPOS) software of the GFZ, which provides zenith total delay (ZTD), integrated water vapor (IWV) and slant total delay (STD) data operationally with a temporal resolution of 2.5 min (STD) and 15 min (ZTD, IWV). The water vapor distribution in the atmosphere is derived by tomographic reconstruction techniques. The quality of the solution is dependent on many factors such as the spatial coverage of the atmosphere with slant paths, the spatial distribution of their intersections and the accuracy of the input observations. Independent observations are required to validate the tomographic reconstructions and to get precise information on the accuracy of the derived 3-D water vapor fields. To determine the quality of the GPS tomography, more than 8000 vertical water vapor profiles at 13 German radiosonde stations were used for the comparison. The radiosondes were launched twice a day (at 00:00 UTC and 12:00 UTC) in 2007. In this paper, parameters of the entire profiles such as the wet refractivity, and the zenith wet delay have been compared. Before the validation the temporal and spatial distribution of the slant paths, serving as a basis for tomographic reconstruction, as well as their angular distribution were studied. The mean wet refractivity differences between tomography and radiosonde data for all points vary from -1.3 to 0.3, and the root mean square is within the range of 6.5-9. About 32% of 6803 profiles match well, 23% match badly and 45% are difficult to classify as they match only in parts.
Malusek, Alexandr; Magnusson, Maria; Sandborg, Michael; Westin, Robin; Alm Carlsson, Gudrun
2014-03-01
Better knowledge of elemental composition of patient tissues may improve the accuracy of absorbed dose delivery in brachytherapy. Deficiencies of water-based protocols have been recognized and work is ongoing to implement patient-specific radiation treatment protocols. A model based iterative image reconstruction algorithm DIRA has been developed by the authors to automatically decompose patient tissues to two or three base components via dual-energy computed tomography. Performance of an updated version of DIRA was evaluated for the determination of prostate calcification. A computer simulation using an anthropomorphic phantom showed that the mass fraction of calcium in the prostate tissue was determined with accuracy better than 9%. The calculated mass fraction was little affected by the choice of the material triplet for the surrounding soft tissue. Relative differences between true and approximated values of linear attenuation coefficient and mass energy absorption coefficient for the prostate tissue were less than 6% for photon energies from 1 keV to 2 MeV. The results indicate that DIRA has the potential to improve the accuracy of dose delivery in brachytherapy despite the fact that base material triplets only approximate surrounding soft tissues.
Improved Algorithms for Radar-Based Reconstruction of Asteroid Spin States and Shapes
Greenberg, Adam; Margot, Jean-Luc
2015-11-01
Earth-based radar is a powerful tool for gathering information about bodies in the Solar System. Radar observations can dramatically improve the determination of the physical properties and orbital elements of small bodies (such as asteroids and comets). An important development in the past two decades has been the formulation and implementation of algorithms for asteroid shape reconstruction based on radar data.Because of the nature of radar data, recovery of the spin state depends on knowledge of the shape and vice versa. Even with perfect spin state information, certain peculiarities of radar images (such as the two-to-one or several-to-one mapping between surface elements on the object and pixels within the radar image) make recovery of the physical shape challenging. This is a computationally intensive problem, potentially involving hundreds to thousands of free parameters and millions of data points.The method by which radar-based shape and spin state modelling is currently accomplished, a Sequential Parameter Fit (SPF), is relatively slow, and incapable of determining the spin state of an asteroid from radar images without substantial user intervention.We implemented a global-parameter optimizer and Square Root Information Filter (SRIF) into the asteroid-modelling software shape. This optimizer can find shapes more quickly than the current method and can determine the asteroid’s spin state.We ran our new algorithm, along with the existing SPF, through several tests, composed of both real and simulated data. The simulated data were composed of noisy images of procedurally generated shapes, as well as noisy images of existing shape models. The real data included recent observations of both 2000 ET70 and 1566 Icarus.These tests indicate that SRIF is faster and more accurate than SPF. In addition, SRIF can autonomously determine the spin state of an asteroid from a variety of starting conditions, a considerable advance over the existing algorithm. We will
Directory of Open Access Journals (Sweden)
Fengmei Liang
2016-09-01
Full Text Available In order to address the problem of the uncertainty of existing noise models and of the complexity and changeability of the edges and textures of low-resolution document images, this paper presents a projection onto convex sets (POCS algorithm based on text features. The current method preserves the edge details and smooths the noise in text images by adding text features as constraints to original POCS algorithms and converting the fixed threshold to an adaptive one. In this paper, the optimized scale invariant feature transform (SIFT algorithm was used for the registration of continuous frames, and finally the image was reconstructed under the improved POCS theoretical framework. Experimental results showed that the algorithm can significantly smooth the noise and eliminate noise caused by the shadows of the lines. The lines of the reconstructed text are smoother and the stroke contours of the reconstructed text are clearer, and this largely eliminates the text edge vibration to enhance the resolution of the document image text.
Sampling conditions for gradient-magnitude sparsity based image reconstruction algorithms
DEFF Research Database (Denmark)
Sidky, Emil Y.; Jørgensen, Jakob Heide; Pan, Xiaochuan
2012-01-01
We seek to characterize the sampling conditions for iterative image reconstruction exploiting gradient-magnitude sparsity. We seek the number of views necessary for accurate image reconstruction by constrained, total variation (TV) minimization, which is the optimization problem suggested...
Framework for the Shape Optimization of Aerodynamic Profiles Using Genetic Algorithms
Directory of Open Access Journals (Sweden)
D. López
2013-01-01
Full Text Available This study developed a framework for the shape optimization of aerodynamics profiles using computational fluid dynamics (CFD and genetic algorithms. A genetic algorithm code and a commercial CFD code were integrated to develop a CFD shape optimization tool. The results obtained demonstrated the effectiveness of the developed tool. The shape optimization of airfoils was studied using different strategies to demonstrate the capacity of this tool with different GA parameter combinations.
Energy Technology Data Exchange (ETDEWEB)
Klymenko, Oleksiy V.; Svir, Irina [Mathematical and Computer Modelling Laboratory, Kharkov National University of Radioelectronics, 14 Lenin Avenue, Kharkov 61166 (Ukraine); Oleinick, Alexander I. [Mathematical and Computer Modelling Laboratory, Kharkov National University of Radioelectronics, 14 Lenin Avenue, Kharkov 61166 (Ukraine); Departement de Chimie, Ecole Normale Superieure, UMR CNRS 8640 ' ' PASTEUR' ' , 24 rue Lhomond, 75231 Paris Cedex 05 (France); Amatore, Christian [Departement de Chimie, Ecole Normale Superieure, UMR CNRS 8640 ' ' PASTEUR' ' , 24 rue Lhomond, 75231 Paris Cedex 05 (France)
2007-12-20
We propose a theoretical method for reconstructing the shape of a hydrodynamic flow profile occurring locally within a rectangular microfluidic channel based on experimental currents measured at double microband electrodes embedded in one channel wall and operating in the generator-collector regime. The ranges of geometrical and flow parameters providing best conditions for the flow profile determination are indicated. The solution of convection-diffusion equation (direct problem) is achieved through the application of the specifically designed conformal mapping of spatial coordinates and an exponentially expanding time grid for obtaining accurate concentration and current distributions. The inverse problem (the problem of flow profile determination) is approached using a variational formulation whose solution is obtained by the Ritz's method. The method may be extended for any number of electrodes in the channel and/or different operating regimes of the system (e.g. generator-generator). (author)
Directory of Open Access Journals (Sweden)
Karla Vittori
2008-12-01
Full Text Available We propose a new distance algorithm for phylogenetic estimation based on Ant Colony Optimization (ACO, named Ant-Based Phylogenetic Reconstruction (ABPR. ABPR joins two taxa iteratively based on evolutionary distance among sequences, while also accounting for the quality of the phylogenetic tree built according to the total length of the tree. Similar to optimization algorithms for phylogenetic estimation, the algorithm allows exploration of a larger set of nearly optimal solutions. We applied the algorithm to four empirical data sets of mitochondrial DNA ranging from 12 to 186 sequences, and from 898 to 16,608 base pairs, and covering taxonomic levels from populations to orders. We show that ABPR performs better than the commonly used Neighbor-Joining algorithm, except when sequences are too closely related (e.g., population-level sequences. The phylogenetic relationships recovered at and above species level by ABPR agree with conventional views. However, like other algorithms of phylogenetic estimation, the proposed algorithm failed to recover expected relationships when distances are too similar or when rates of evolution are very variable, leading to the problem of long-branch attraction. ABPR, as well as other ACO-based algorithms, is emerging as a fast and accurate alternative method of phylogenetic estimation for large data sets.
Dietrich, Felix
2017-01-01
Reconstructing the invariant mass in a Higgs boson decay event containing tau leptons turns out to be a challenging endeavour. The aim of this summer student project is to implement a new algorithm for this task, using deep neural networks and machine learning. The results are compared to SVFit, an existing algorithm that uses dynamical likelihood techniques. A neural network is found that reaches the accuracy of SVFit at low masses and even surpasses it at higher masses, while at the same time providing results a thousand times faster.
Directory of Open Access Journals (Sweden)
Rihab Hmida
2016-08-01
Full Text Available In this paper, we present a new stereo vision-based system and its efficient hardware implementation for real-time underwater environments exploration throughout 3D sparse reconstruction based on a number of feature points. The proposed underwater 3D shape reconstruction algorithm details are presented. The main concepts and advantages are discussed and comparison with existing systems is performed. In order to achieve real-time video constraints, a hardware implementation of the algorithm is performed using Xilinx System Generator. The pipelined stereo vision system has been implemented using Field Programmable Gate Arrays (FPGA technology. Both timing constraints and mathematical operations precision have been evaluated in order to validate the proposed hardware implementation of our system. Experimental results show that the proposed system presents high accuracy and execution time performances.
Bauman, William H., III
2014-01-01
NASAs LSP customers and the future SLS program rely on observations of upper-level winds for steering, loads, and trajectory calculations for the launch vehicles flight. On the day of launch, the 45th Weather Squadron (45 WS) Launch Weather Officers (LWOs) monitor the upper-level winds and provide forecasts to the launch team via the AMU-developed LSP Upper Winds tool for launches at Kennedy Space Center (KSC) and Cape Canaveral Air Force Station. This tool displays wind speed and direction profiles from rawinsondes released during launch operations, the 45th Space Wing 915-MHz Doppler Radar Wind Profilers (DRWPs) and KSC 50-MHz DRWP, and output from numerical weather prediction models.The goal of this task was to splice the wind speed and direction profiles from the 45th Space Wing (45 SW) 915-MHz Doppler radar Wind Profilers (DRWPs) and KSC 50-MHz DRWP at altitudes where the wind profiles overlap to create a smooth profile. In the first version of the LSP Upper Winds tool, the top of the 915-MHz DRWP wind profile and the bottom of the 50-MHz DRWP were not spliced, sometimes creating a discontinuity in the profile. The Marshall Space Flight Center (MSFC) Natural Environments Branch (NE) created algorithms to splice the wind profiles from the two sensors to generate an archive of vertically complete wind profiles for the SLS program. The AMU worked with MSFC NE personnel to implement these algorithms in the LSP Upper Winds tool to provide a continuous spliced wind profile.The AMU transitioned the MSFC NE algorithms to interpolate and fill data gaps in the data, implement a Gaussian weighting function to produce 50-m altitude intervals in each sensor, and splice the data together from both DRWPs. They did so by porting the MSFC NE code written with MATLAB software into Microsoft Excel Visual Basic for Applications (VBA). After testing the new algorithms in stand-alone VBA modules, the AMU replaced the existing VBA code in the LSP Upper Winds tool with the new
Gassenmaier, Tobias; Allmendinger, Thomas; Kunz, Andreas S; Veyhl-Wichmann, Maike; Erg?n, S?leyman; Bley, Thorsten A.; Petritsch, Bernhard
2017-01-01
Background Coronary artery calcium (CAC) scoring is a widespread tool for cardiac risk assessment in asymptomatic patients and accompanying possible adverse effects, i.e. radiation exposure, should be as low as reasonably achievable. Purpose To evaluate a new iterative reconstruction (IR) algorithm for dose reduction of in?vitro coronary artery calcium scoring at different tube currents. Material and Methods An anthropomorphic calcium scoring phantom was scanned in different configurations si...
Formica, A
2003-01-01
This paper gives an overview of a reconstruction algorithm for muon events in ATLAS experiment at CERN. After a short introduction on ATLAS Muon Spectrometer, we will describe the procedure performed by the algorithms Muonbox and Muonboy (last version) in order to achieve correctly the reconstruction task. These algorithms have been developed in Fortran language and are working in the official C++ framework Athena, as well as in stand alone mode. A description of the interaction between Muonboy and Athena will be given, together with the reconstruction performances (efficiency and momentum resolution) obtained with MonteCarlo data.
Mary, D.; Ferrari, A.; Ferrari, C.; Deguignet, J.; Vannier, M.
2016-12-01
With millions of receivers leading to TerraByte data cubes, the story of the giant SKA telescope is also that of collaborative efforts from radioastronomy, signal processing, optimization and computer sciences. Reconstructing SKA cubes poses two challenges. First, the majority of existing algorithms work in 2D and cannot be directly translated into 3D. Second, the reconstruction implies solving an inverse problem and it is not clear what ultimate limit we can expect on the error of this solution. This study addresses (of course partially) both challenges. We consider an extremely simple data acquisition model, and we focus on strategies making it possible to implement 3D reconstruction algorithms that use state-of-the-art image/spectral regularization. The proposed approach has two main features: (i) reduced memory storage with respect to a previous approach; (ii) efficient parallelization and ventilation of the computational load over the spectral bands. This work will allow to implement and compare various 3D reconstruction approaches in a large scale framework.
Melli, S. Ali; Wahid, Khan A.; Babyn, Paul; Cooper, David M. L.; Gopi, Varun P.
2016-12-01
Synchrotron X-ray Micro Computed Tomography (Micro-CT) is an imaging technique which is increasingly used for non-invasive in vivo preclinical imaging. However, it often requires a large number of projections from many different angles to reconstruct high-quality images leading to significantly high radiation doses and long scan times. To utilize this imaging technique further for in vivo imaging, we need to design reconstruction algorithms that reduce the radiation dose and scan time without reduction of reconstructed image quality. This research is focused on using a combination of gradient-based Douglas-Rachford splitting and discrete wavelet packet shrinkage image denoising methods to design an algorithm for reconstruction of large-scale reduced-view synchrotron Micro-CT images with acceptable quality metrics. These quality metrics are computed by comparing the reconstructed images with a high-dose reference image reconstructed from 1800 equally spaced projections spanning 180°. Visual and quantitative-based performance assessment of a synthetic head phantom and a femoral cortical bone sample imaged in the biomedical imaging and therapy bending magnet beamline at the Canadian Light Source demonstrates that the proposed algorithm is superior to the existing reconstruction algorithms. Using the proposed reconstruction algorithm to reduce the number of projections in synchrotron Micro-CT is an effective way to reduce the overall radiation dose and scan time which improves in vivo imaging protocols.
Corrigendum to: Optimum profile modifications of spur gears by means of genetic algorithms
Barbieri, Marco; Bonori, Giorgio; Pellicano, Francesco
2012-10-01
The purpose of the present work is to correct some inaccuracies of the paper "Bonori, G., Barbieri, M., Pellicano, F., 2008, Optimum Profile Modifications of Spur Gears by Means of Genetic Algorithms, Journal of Sound and Vibration, 313, pp. 603-616"; in that work, the aim was the reduction of vibrations in spur gears by means of profile modifications. This goal was achieved by using an ad hoc genetic algorithm, where the objective function was the peak to peak or the harmonic content of the Static Transmission Error (STE) computed by Finite Element calculations. The efficiency in terms of vibration reduction of the optimized profile reliefs was checked using a one degree of freedom dynamic model. This dynamic model considers time varying mesh stiffness, backlash, and profile error. In the original paper the effect of intentional profile modifications was considered as part of the mesh stiffness, thus overestimating their effect in vibration reduction. In the present corrigendum, the dynamic model is updated, keeping into account profile deviations by means of an error function. Finally, the optimal profile modifications found in the original paper are checked using the updated model.
Mickevicius, Nikolai J.; Paulson, Eric S.
2017-04-01
The purpose of this work is to investigate the effects of undersampling and reconstruction algorithm on the total processing time and image quality of respiratory phase-resolved 4D MRI data. Specifically, the goal is to obtain quality 4D-MRI data with a combined acquisition and reconstruction time of five minutes or less, which we reasoned would be satisfactory for pre-treatment 4D-MRI in online MRI-gRT. A 3D stack-of-stars, self-navigated, 4D-MRI acquisition was used to scan three healthy volunteers at three image resolutions and two scan durations. The NUFFT, CG-SENSE, SPIRiT, and XD-GRASP reconstruction algorithms were used to reconstruct each dataset on a high performance reconstruction computer. The overall image quality, reconstruction time, artifact prevalence, and motion estimates were compared. The CG-SENSE and XD-GRASP reconstructions provided superior image quality over the other algorithms. The combination of a 3D SoS sequence and parallelized reconstruction algorithms using computing hardware more advanced than those typically seen on product MRI scanners, can result in acquisition and reconstruction of high quality respiratory correlated 4D-MRI images in less than five minutes.
Kligerman, Seth; Lahiji, Kian; Weihe, Elizabeth; Lin, Cheng Tin; Terpenning, Silanath; Jeudy, Jean; Frazier, Annie; Pugatch, Robert; Galvin, Jeffrey R; Mittal, Deepika; Kothari, Kunal; White, Charles S
2015-01-01
The purpose of the study was to determine whether a model-based iterative reconstruction (MBIR) technique improves diagnostic confidence and detection of pulmonary embolism (PE) compared with hybrid iterative reconstruction (HIR) and filtered back projection (FBP) reconstructions in patients undergoing computed tomography pulmonary angiography. The study was approved by our institutional review board. Fifty patients underwent computed tomography pulmonary angiography at 100 kV using standard departmental protocols. Twenty-two of 50 patients had studies positive for PE. All 50 studies were reconstructed using FBP, HIR, and MBIR. After image randomization, 5 thoracic radiologists and 2 thoracic radiology fellows graded each study on a scale of 1 (very poor) to 5 (ideal) in 4 subjective categories: diagnostic confidence, noise, pulmonary artery enhancement, and plastic appearance. Readers assessed each study for the presence of PE. Parametric and nonparametric data were analyzed with repeated measures and Friedman analysis of variance, respectively. For the 154 positive studies (7 readers × 22 positive studies), pooled sensitivity for detection of PE was 76% (117/154), 78.6% (121/154), and 82.5% (127/154) using FBP, HIR, and MBIR, respectively. PE detection was significantly higher using MBIR compared with FBP (P = 0.016) and HIR (P = 0.046). Because of nonsignificant increase in FP studies using HIR and MBIR, accuracy with MBIR (88.6%), HIR (87.1%), and FBP (87.7%) was similar. Compared with FBP, MBIR led to a significant subjective increase in diagnostic confidence, noise, and enhancement in 6/7, 6/7, and 7/7 readers, respectively. Compared with HIR, MBIR led to significant subjective increase in diagnostic confidence, noise, and enhancement in 5/7, 5/7, and 7/7 readers, respectively. MBIR led to a subjective increase in plastic appearance in all 7 readers compared with both FBP and HIR. MBIR led to significant increase in PE detection compared with FBP and HIR
Matsutomo, Norikazu; Furuya, Hiroaki; Yamao, Taichirou; Nishiyama, Norimi; Suruga, Takefumi; Sugino, Shuichi; Fujihara, Shuuji; Yoshioka, Ryuji
2008-11-20
In the OS-EM method, reconfigured images may be different among reconstruction image processors because the programs are highly arbitrary. The purpose of this study was to evaluate the difference in OS-EM algorithms among four different image processors using a digital phantom dedicated for SPECT data evaluation. The image processors used were GMS-5500A/PI (Toshiba), GENIE Xeleris (GE), e.soft (Siemens), and Odyssey FX (Shimadzu). Multiple images were reconstructed with OS-EM fluctuating the number of subsets and iterations. A region of interest (ROI) was placed on each image. The average counts, contrast, root mean square uncertainty (%RMSU), and normalized mean squared error (NMSE) of each ROI were calculated and compared with those of different image processors. There was no significant difference in contrast among the algorithms. However, the average counts and (%RMSU were significantly different among algorithms as the number of updates increased. In addition, the minimums of NMSE were also different among algorithms. In the OS-EM method, careful evaluation is necessary when using multiple image processors in research studies on the standardization of nuclear medicine imaging or in clinical applications.
Hou, Xiaowen; Teng, Yueyang; Kang, Yan; Qi, Shouliang
2017-11-24
Total variation minimization (TVM) is a popular and useful method for accurate CT reconstruction from few-views and limited-angle data. However, the optimization procedure of previous TVM-based algorithms is very time-consuming. The purpose of this paper was to accelerate the high image quality CT reconstruction from few-views and limited-angle data. A new optimization algorithm based on the optimization transfer principle is proposed. The proposed algorithm uses TVM as the regularization term of the cost function that ensures the quality of the CT image reconstructed from few-views and limited-angle data. Additionally, half of the square of the difference between the original projection and the forward projection is used as the fidelity term. We then proved that the regularization term, i.e., 2-norm TV, is a convex function. Based on the convexity of the regularization and fidelity terms, a separable quadratic surrogate (SQS) function was proposed to substitute the regularization and fidelity terms. The solution of the cost function can be obtained by minimizing the SQS function and building the next SQS function at the minimum point. Both numerical simulations and simulations using real experimental data showed that the proposed algorithm reconstruct high-quality CT image from few-views and limited-angle data. The differences between the image reconstructed by the proposed algorithm and the images reconstructed by the previous algorithms are very small. However, the proposed algorithm required less than 1/10 time of the computational time of the previous algorithms. The image quality is not assessed in a rigorous way. The proposed algorithm can greatly accelerate the accurate CT reconstruction from few-views and limited-angle data relative to previous algorithms. © 2017 American Association of Physicists in Medicine.
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Vidal Gimeno, V.
2012-07-01
The algebraic reconstruction methods are based on solving a system of linear equations. In a previous study, was used and showed as the PETSc library, was and is a scientific computing tool, which facilitates and enables the optimal use of a computer system in the image reconstruction process.
A First-Order Primal-Dual Reconstruction Algorithm for Few-View SPECT
DEFF Research Database (Denmark)
Wolf, Paul; Jørgensen, Jakob Heide; Gilat-Schmidt, Taly
2012-01-01
Maximization (MLEM) reconstructions were performed to provide reference images. Spatial resolution, accuracy, and signal-to-noise ratio was calculated and compared for all reconstructions. In general, increased values of the blurring parameter and TV weighting parameters reduced noise and streaking artifacts...
Ingesson, L. C.; Pickalov, V. V.
1996-01-01
Most standard tomographic inversion methods require many measurements with a regular coverage of the object studied. A new method has been developed to obtain tomographic reconstructions from measurements by systems with a small number of detectors and an irregular coverage. The method reconstructs
Li, Zengguang; Xi, Xiaoqi; Han, Yu; Yan, Bin; Li, Lei
2016-10-01
The circle-plus-line trajectory satisfies the exact reconstruction data sufficiency condition, which can be applied in C-arm X-ray Computed Tomography (CT) system to increase reconstruction image quality in a large cone angle. The m-line reconstruction algorithm is adopted for this trajectory. The selection of the direction of m-lines is quite flexible and the m-line algorithm needs less data for accurate reconstruction compared with FDK-type algorithms. However, the computation complexity of the algorithm is very large to obtain efficient serial processing calculations. The reconstruction speed has become an important issue which limits its practical applications. Therefore, the acceleration of the algorithm has great meanings. Compared with other hardware accelerations, the graphics processing unit (GPU) has become the mainstream in the CT image reconstruction. GPU acceleration has achieved a better acceleration effect in FDK-type algorithms. But the implementation of the m-line algorithm's acceleration for the circle-plus-line trajectory is different from the FDK algorithm. The parallelism of the circular-plus-line algorithm needs to be analyzed to design the appropriate acceleration strategy. The implementation can be divided into the following steps. First, selecting m-lines to cover the entire object to be rebuilt; second, calculating differentiated back projection of the point on the m-lines; third, performing Hilbert filtering along the m-line direction; finally, the m-line reconstruction results need to be three-dimensional-resembled and then obtain the Cartesian coordinate reconstruction results. In this paper, we design the reasonable GPU acceleration strategies for each step to improve the reconstruction speed as much as possible. The main contribution is to design an appropriate acceleration strategy for the circle-plus-line trajectory m-line reconstruction algorithm. Sheep-Logan phantom is used to simulate the experiment on a single K20 GPU. The
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Lee, Eun Sun [Department of Radiology, Seoul National University Hospital (Korea, Republic of); Institute of Radiation Medicine, Seoul National University Hospital (Korea, Republic of); Kim, Se Hyung, E-mail: shkim7071@gmail.com [Department of Radiology, Seoul National University Hospital (Korea, Republic of); Institute of Radiation Medicine, Seoul National University Hospital (Korea, Republic of); Im, Jong Pil; Kim, Sang Gyun [Department of Internal Medicine, Seoul National University Hospital (Korea, Republic of); Shin, Cheong-il; Han, Joon Koo; Choi, Byung Ihn [Department of Radiology, Seoul National University Hospital (Korea, Republic of); Institute of Radiation Medicine, Seoul National University Hospital (Korea, Republic of)
2015-04-15
Highlights: •We assessed the effect of reconstruction algorithms on CAD in ultra-low dose CTC. •30 patients underwent ultra-low dose CTC using 120 and 100 kVp with 10 mAs. •CT was reconstructed with FBP, ASiR and Veo and then, we applied a CAD system. •Per-polyp sensitivity of CAD in ULD CT can be improved with the IR algorithms. •Despite of an increase in the number of FPs with IR, it was still acceptable. -- Abstract: Purpose: To assess the effect of different reconstruction algorithms on computer-aided diagnosis (CAD) performance in ultra-low-dose CT colonography (ULD CTC). Materials and methods: IRB approval and informed consents were obtained. Thirty prospectively enrolled patients underwent non-contrast CTC at 120 kVp/10 mAs in supine and 100 kVp/10 mAs in prone positions, followed by same-day colonoscopy. Images were reconstructed with filtered back projection (FBP), 80% adaptive statistical iterative reconstruction (ASIR80), and model-based iterative reconstruction (MBIR). A commercial CAD system was applied and per-polyp sensitivities and numbers of false-positives (FPs) were compared among algorithms. Results: Mean effective radiation dose of CTC was 1.02 mSv. Of 101 polyps detected and removed by colonoscopy, 61 polyps were detected on supine and on prone CTC datasets on consensus unblinded review, resulting in 122 visible polyps (32 polyps <6 mm, 52 6–9.9 mm, and 38 ≥ 10 mm). Per-polyp sensitivity of CAD for all polyps was highest with MBIR (56/122, 45.9%), followed by ASIR80 (54/122, 44.3%) and FBP (43/122, 35.2%), with significant differences between FBP and IR algorithms (P < 0.017). Per-polyp sensitivity for polyps ≥ 10 mm was also higher with MBIR (25/38, 65.8%) and ASIR80 (24/38, 63.2%) than with FBP (20/38, 58.8%), albeit without statistical significance (P > 0.017). Mean number of FPs was significantly different among algorithms (FBP, 1.4; ASIR, 2.1; MBIR, 2.4) (P = 0.011). Conclusion: Although the performance of stand-alone CAD
Reconstructing matter profiles of spherically compensated cosmic regions in ΛCDM cosmology
de Fromont, Paul; Alimi, Jean-Michel
2018-02-01
The absence of a physically motivated model for large-scale profiles of cosmic voids limits our ability to extract valuable cosmological information from their study. In this paper, we address this problem by introducing the spherically compensated cosmic regions, named CoSpheres. Such cosmic regions are identified around local extrema in the density field and admit a unique compensation radius R1 where the internal spherical mass is exactly compensated. Their origin is studied by extending the standard peak model and implementing the compensation condition. Since the compensation radius evolves as the Universe itself, R1(t) ∝ a(t), CoSpheres behave as bubble Universes with fixed comoving volume. Using the spherical collapse model, we reconstruct their profiles with a very high accuracy until z = 0 in N-body simulations. CoSpheres are symmetrically defined and reconstructed for both central maximum (seeding haloes and galaxies) and minimum (identified with cosmic voids). We show that the full non-linear dynamics can be solved analytically around this particular compensation radius, providing useful predictions for cosmology. This formalism highlights original correlations between local extremum and their large-scale cosmic environment. The statistical properties of these spherically compensated cosmic regions and the possibilities to constrain efficiently both cosmology and gravity will be investigated in companion papers.
SCIAMACHY stratospheric aerosol extinction profile retrieval using the OMPS/LP algorithm
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G. Taha
2011-03-01
Full Text Available The Ozone Mapper and Profiler Suite, Limp Profiler (OMPS/LP algorithm is used to retrieve ozone concentration and aerosol extinction profiles using a series of 120 SCIAMACHY limb measurements collocated with SAGE II solar occultation events. The primary goal of the study is to ascertain the capability of the OMPS/LP retrieval algorithm to accurately retrieve the vertical distribution of stratospheric aerosol extinction coefficient so as to better account for aerosol effects in the ozone profiling retrieval process. Using simulated radiances, we show that the aerosol extinction coefficient can be retrieved from limb scatter measurements within 5% and a standard deviation better than 15%, which is more than sufficient to improve the OMPS/LP ozone products to be used as Environmental Data Records. We also illustrate the ability of SCIAMACHY limb measurements to retrieve stratospheric aerosol extinction profiles with accuracy comparable to other instruments. The retrieved aerosol extinction profiles agree with collocated SAGE II measurements on average to within 25%, with a standard deviation of 35%.
Masunaga, Hirohiko; Kummerow, Christian D.
2005-01-01
A methodology to analyze precipitation profiles using the Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI) and precipitation radar (PR) is proposed. Rainfall profiles are retrieved from PR measurements, defined as the best-fit solution selected from precalculated profiles by cloud-resolving models (CRMs), under explicitly defined assumptions of drop size distribution (DSD) and ice hydrometeor models. The PR path-integrated attenuation (PIA), where available, is further used to adjust DSD in a manner that is similar to the PR operational algorithm. Combined with the TMI-retrieved nonraining geophysical parameters, the three-dimensional structure of the geophysical parameters is obtained across the satellite-observed domains. Microwave brightness temperatures are then computed for a comparison with TMI observations to examine if the radar-retrieved rainfall is consistent in the radiometric measurement space. The inconsistency in microwave brightness temperatures is reduced by iterating the retrieval procedure with updated assumptions of the DSD and ice-density models. The proposed methodology is expected to refine the a priori rain profile database and error models for use by parametric passive microwave algorithms, aimed at the Global Precipitation Measurement (GPM) mission, as well as a future TRMM algorithms.
Chen, Chi-Kan
2017-07-26
The identification of genetic regulatory networks (GRNs) provides insights into complex cellular processes. A class of recurrent neural networks (RNNs) captures the dynamics of GRN. Algorithms combining the RNN and machine learning schemes were proposed to reconstruct small-scale GRNs using gene expression time series. We present new GRN reconstruction methods with neural networks. The RNN is extended to a class of recurrent multilayer perceptrons (RMLPs) with latent nodes. Our methods contain two steps: the edge rank assignment step and the network construction step. The former assigns ranks to all possible edges by a recursive procedure based on the estimated weights of wires of RNN/RMLP (RE RNN /RE RMLP ), and the latter constructs a network consisting of top-ranked edges under which the optimized RNN simulates the gene expression time series. The particle swarm optimization (PSO) is applied to optimize the parameters of RNNs and RMLPs in a two-step algorithm. The proposed RE RNN -RNN and RE RMLP -RNN algorithms are tested on synthetic and experimental gene expression time series of small GRNs of about 10 genes. The experimental time series are from the studies of yeast cell cycle regulated genes and E. coli DNA repair genes. The unstable estimation of RNN using experimental time series having limited data points can lead to fairly arbitrary predicted GRNs. Our methods incorporate RNN and RMLP into a two-step structure learning procedure. Results show that the RE RMLP using the RMLP with a suitable number of latent nodes to reduce the parameter dimension often result in more accurate edge ranks than the RE RNN using the regularized RNN on short simulated time series. Combining by a weighted majority voting rule the networks derived by the RE RMLP -RNN using different numbers of latent nodes in step one to infer the GRN, the method performs consistently and outperforms published algorithms for GRN reconstruction on most benchmark time series. The framework of two
Larsen, J F; Christensen, K S; Egeblad, K
1988-12-01
Transcutaneous oxygen tension during exercise (TcPo2 exercise profile) was measured on the foot in 10 patients before reconstructive vascular surgery and 9 and 18 months later. The preoperative TcPo2 exercise profiles were abnormal in all 10 patients. In 9 of the patients the reconstructions were successful. In these patients the TcPo2 exercise profiles reverted to normal. In a control group of six healthy persons no significant changes in TcPo2 were observed during the follow-up period of 18 months. The reproducibility determined as the total week-to-week variation of claudicants and controls was 8%. The TcPo2 exercise test is suitable for monitoring the patient after reconstructive surgery, because it is based exclusively on objective data is non-invasive and the measurements are reproducible.
Eclov, N; Loo, B; Graves, E; Maxim, P
2012-06-01
Precise tumor delineation is important in thoracic radiation therapy planning, and using a 'lung detail' computed tomography (CT) reconstruction algorithm can assist in visualizing the tumor. We seek to determine the dosimetric impact of utilizing a lung detail algorithm versus a standard algorithm on calculated dose in radiation treatment planning. Ten patients, with 12 tumors, were analyzed in this study. Two CT scans, one reconstructed using a standard algorithm and one using a lung detail algorithm, were generated for each of 12 lung tumors. Treatment plans were calculated for each CT scan, with 7 tumors receiving stereotactic ablative radiotherapy (SABR) and 5 receiving intensity-modulated radiation therapy (IMRT). The Hounsfield unit (HU) and dose values for each voxel of the planning tumor volume (PTV), esophagus, spinal cord, and contralateral lung in both the CT and dose images were exported to MATLAB. For each contour, the voxel-by-voxel differences in the HU and dose distributions between the two scans were analyzed along with dose-volume histogram (DVH) data. Despite changes in HU values, the voxel-by-voxel analysis showed a negligible shift in dose values. The mean differences in dose for PTV, esophagus, spinal cord, and contralateral lung ranged from -12.12 to 22.57, -2.21 to 7.40, -0.50 to 5.93, and -1.12 to 7.41 cGy, respectively. DVH comparisons demonstrated no meaningful difference between plans. The mean PTV, esophagus, spinal cord, and contralateral lung doses measured from the DVH shifted between plans an average of 3.5, 2.93, -0.6 and -0.35 cGy, respectively. These dose differences are all less than 1% of the dose prescribed to the tumor and are not measurable by current technology. The lung detail reconstruction algorithm, when applied to thoracic radiation treatment planning CT scans, can help precisely delineate tumor with negligible dosimetric impact. © 2012 American Association of Physicists in Medicine.
Maldonado Puente, Bryan Patricio
2014-01-01
The inner detector of the ATLAS experiment has two types of silicon detectors used for tracking: Pixel Detector and SCT (semiconductor tracker). Once a proton-proton collision occurs, the result- ing particles pass through these detectors and these are recorded as hits on the detector surfaces. A medium to high energy particle passes through seven different surfaces of the two detectors, leaving seven hits, while lower energy particles can leave many more hits as they circle through the detector. For a typical event during the expected operational conditions, there are 30 000 hits in average recorded by the sensors. Only high energy particles are of interest for physics analysis and are taken into account for the path reconstruction; thus, a filtering process helps to discard the low energy particles produced in the collision. The following report presents a solution for increasing the speed of the filtering process in the path reconstruction algorithm.
Energy Technology Data Exchange (ETDEWEB)
Kerschen, N
2006-09-15
The ATLAS experiment is a general purpose particle physics experiment mainly aimed at the discovery of the origin of mass through the research of the Higgs boson. In order to achieve this, the Large Hadron Collider at CERN will accelerate two proton beams and make them collide at the centre of the experiment. ATLAS will discover new particles through the measurement of their decay products. Electrons are such decay products: they produce an electromagnetic shower in the calorimeter by which they lose all their energy. The calorimeter is divided into cells and the deposited energy is reconstructed using an algorithm to assemble the cells into clusters. The purpose of this thesis is to study a new kind of algorithm adapting the cluster to the shower topology. In order to reconstruct the energy of the initially created electron, the cluster has to be calibrated by taking into account the energy lost in the dead material in front of the calorimeter. Therefore. a Monte-Carlo simulation of the ATLAS detector has been used to correct for effects of response modulation in position and in energy and to optimise the energy resolution as well as the linearity. An analysis of test beam data has been performed to study the behaviour of the algorithm in a more realistic environment. We show that the requirements of the experiment can be met for the linearity and resolution. The improvement of this new algorithm, compared to a fixed sized cluster. is the better recovery of Bremsstrahlung photons emitted by the electron in the material in front of the calorimeter. A Monte-Carlo analysis of the Higgs boson decay in four electrons confirms this result. (author)
Directory of Open Access Journals (Sweden)
P. Sibanda
2011-02-01
Full Text Available Successful empirical modeling of the topside ionosphere relies on the availability of good quality measured data. The Alouette, ISIS and Intercosmos-19 satellite missions provided large amounts of topside sounder data, but with limited coverage of relevant geophysical conditions (e.g., geographic location, diurnal, seasonal and solar activity by each individual mission. Recently, methods for inferring the electron density distribution in the topside ionosphere from Global Positioning System (GPS-based total electron content (TEC measurements have been developed. This study is focused on the modeling efforts in South Africa and presents the implementation of a technique for reconstructing the topside ionospheric electron density (N_{e} using a combination of GPS-TEC and ionosonde measurements and empirically obtained Upper Transition Height (UTH. The technique produces reasonable profiles as determined by the global models already in operation. With the added advantage that the constructed profiles are tied to reliable measured GPS-TEC and the empirically determined upper transition height, the technique offers a higher level of confidence in the resulting N_{e} profiles.
Ltaief, Hatem
2011-08-31
This paper presents the power profile of two high performance dense linear algebra libraries i.e., LAPACK and PLASMA. The former is based on block algorithms that use the fork-join paradigm to achieve parallel performance. The latter uses fine-grained task parallelism that recasts the computation to operate on submatrices called tiles. In this way tile algorithms are formed. We show results from the power profiling of the most common routines, which permits us to clearly identify the different phases of the computations. This allows us to isolate the bottlenecks in terms of energy efficiency. Our results show that PLASMA surpasses LAPACK not only in terms of performance but also in terms of energy efficiency. © 2011 Springer-Verlag.
Directory of Open Access Journals (Sweden)
Charles M Malata
2015-10-01
Full Text Available Introduction: The deep inferior epigastric artery perforator (DIEP free flap is the gold standard for autologous breast reconstruction. However, using a single vascular pedicle may not yield sufficient tissue in patients with midline scars or insufficient lower abdominal pannus. Double-pedicled free flaps overcome this problem using different vascular arrangements to harvest the entire lower abdominal flap. The literature is, however, sparse regarding technique selection. We therefore reviewed our experience in order to formulate an algorithm and comprehensive classification for this purpose. Methods: All patients undergoing unilateral double-pedicled abdominal perforator free flap breast reconstruction (AFFBR by a single surgeon (CMM over 40 months were reviewed from a prospectively collected database. Results: Of the 112 consecutive breast free flaps performed, 25 (22% utilised two vascular pedicles. The mean patient age was 45 years (range=27-54. All flaps but one (which used the thoracodorsal system were anastomosed to the internal mammary vessels using the rib-preservation technique. The surgical duration was 656 minutes (range=468-690 mins. The median flap weight was 618g (range=432-1275g and the mastectomy weight was 445g (range=220-896g. All flaps were successful and only three patients requested minor liposuction to reduce and reshape their reconstructed breasts.Conclusion: Bipedicled free abdominal perforator flaps, employed in a fifth of all our AFFBRs, are a reliable and safe option for unilateral breast reconstruction. They, however, necessitate clear indications to justify the additional technical complexity and surgical duration. Our algorithm and comprehensive classification facilitate technique selection for the anastomotic permutations and successful execution of these operations.
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Puchner, Stefan B. [Massachusetts General Hospital, Harvard Medical School, Cardiac MR PET CT Program, Department of Radiology, Boston, MA (United States); Medical University of Vienna, Department of Biomedical Imaging and Image-Guided Therapy, Vienna (Austria); Ferencik, Maros [Massachusetts General Hospital, Harvard Medical School, Cardiac MR PET CT Program, Department of Radiology, Boston, MA (United States); Harvard Medical School, Division of Cardiology, Massachusetts General Hospital, Boston, MA (United States); Maurovich-Horvat, Pal [Massachusetts General Hospital, Harvard Medical School, Cardiac MR PET CT Program, Department of Radiology, Boston, MA (United States); Semmelweis University, MTA-SE Lenduelet Cardiovascular Imaging Research Group, Heart and Vascular Center, Budapest (Hungary); Nakano, Masataka; Otsuka, Fumiyuki; Virmani, Renu [CV Path Institute Inc., Gaithersburg, MD (United States); Kauczor, Hans-Ulrich [University Hospital Heidelberg, Ruprecht-Karls-University of Heidelberg, Department of Diagnostic and Interventional Radiology, Heidelberg (Germany); Hoffmann, Udo [Massachusetts General Hospital, Harvard Medical School, Cardiac MR PET CT Program, Department of Radiology, Boston, MA (United States); Schlett, Christopher L. [Massachusetts General Hospital, Harvard Medical School, Cardiac MR PET CT Program, Department of Radiology, Boston, MA (United States); University Hospital Heidelberg, Ruprecht-Karls-University of Heidelberg, Department of Diagnostic and Interventional Radiology, Heidelberg (Germany)
2015-01-15
To evaluate whether iterative reconstruction algorithms improve the diagnostic accuracy of coronary CT angiography (CCTA) for detection of lipid-core plaque (LCP) compared to histology. CCTA and histological data were acquired from three ex vivo hearts. CCTA images were reconstructed using filtered back projection (FBP), adaptive-statistical (ASIR) and model-based (MBIR) iterative algorithms. Vessel cross-sections were co-registered between FBP/ASIR/MBIR and histology. Plaque area <60 HU was semiautomatically quantified in CCTA. LCP was defined by histology as fibroatheroma with a large lipid/necrotic core. Area under the curve (AUC) was derived from logistic regression analysis as a measure of diagnostic accuracy. Overall, 173 CCTA triplets (FBP/ASIR/MBIR) were co-registered with histology. LCP was present in 26 cross-sections. Average measured plaque area <60 HU was significantly larger in LCP compared to non-LCP cross-sections (mm{sup 2}: 5.78 ± 2.29 vs. 3.39 ± 1.68 FBP; 5.92 ± 1.87 vs. 3.43 ± 1.62 ASIR; 6.40 ± 1.55 vs. 3.49 ± 1.50 MBIR; all p < 0.0001). AUC for detecting LCP was 0.803/0.850/0.903 for FBP/ASIR/MBIR and was significantly higher for MBIR compared to FBP (p = 0.01). MBIR increased sensitivity for detection of LCP by CCTA. Plaque area <60 HU in CCTA was associated with LCP in histology regardless of the reconstruction algorithm. However, MBIR demonstrated higher accuracy for detecting LCP, which may improve vulnerable plaque detection by CCTA. (orig.)
Albert, A.; André, M.; Anghinolfi, M.; Anton, G.; Ardid, M.; Aubert, J.-J.; Avgitas, T.; Baret, B.; Barrios-Martí, J.; Basa, S.; Bertin, V.; Biagi, S.; Bormuth, R.; Bourret, S.; Bouwhuis, M.C.; Bruijn, R.; Brunner, J.; Busto, J.; Capone, A.; Caramete, L.; Carr, J.; Celli, S.; Chiarusi, T.; Circella, M.; Coelho, C.O.A.; Coleiro, A.; Coniglione, R.; Costantini, H.; Coyle, P.; Creusot, A.; Deschamps, A.; De Bonis, G.; Distefano, C.; Di Palma, I.; Domi, A.; Donzaud, C.; Dornic, D.; Drouhin, D.; Eberl, T.; El Bojaddaini, I.; Elsässer, D.; Enzenhofer, A.; Felis, I.; Folger, F.; Fusco, L.A.; Galata, S.; Gay, P.; Giordano, V.; Glotin, H.; Grégoire, T.; Gracia-Ruiz, R.; Graf, K.; Hallmann, S.; van Haren, H.; Heijboer, A.J.; Hello, Y.; Hernandez-Rey, J.J.; Hößl, J.; Hofestädt, J.; Hugon, C.; Illuminati, G.; James, C.W.; de Jong, M.; Jongen, M.; Kadler, M.; Kalekin, O.; Katz, U.; Kießling, D.; Kouchner, A.; Kreter, M.; Kreykenbohm, I.; Kulikovskiy, V.; Lachaud, C.; Lahmann, R.; Lefevre, D.; Leonora, E.; Lotze, M.; Loucatos, S.; Marcelin, M.; Margiotta, A.; Marinelli, A.; Martinez-Mora, J.A.; Mele, R.; Melis, K.; Michael, T.; Migliozzi, P.; Moussa, A.; Nezri, E.; Organokov, M.; Pavalas, G.E.; Pellegrino, C.; Perrina, C.; Piattelli, P.; Popa, V.; Pradier, T.; Quinn, L.; Racca, C.; Riccobene, G.; Sanchez-Losa, A.; Saldaña, M.; Salvadori, I.; Samtleben, D.F.E.; Sanguineti, M.; Sapienza, P.; Schussler, F.; Sieger, C.; Spurio, M.; Stolarczyk, T.; Taiuti, M.; Tayalati, Y.; Trovato, A.; Turpin, D.; Tönnis, C.; Vallage, B.; Van Elewyck, V.; Versari, F.; Vivolo, D.; Vizzoca, A.; Wilms, J.; Zornoza, J.D.; Zuniga, J.
2017-01-01
A novel algorithm to reconstruct neutrino-induced particle showers within the ANTARES neutrino telescope is presented. The method achieves a median angular resolution of 6∘ for shower energies below 100 TeV. Applying this algorithm to 6 years of data taken with the ANTARES detector, 8 events with
Directory of Open Access Journals (Sweden)
Maryam Shokouhi
2017-06-01
Full Text Available Distribution networks are designed as a ring and operated as a radial form. Therefore, the reconfiguration is a simple and cost-effective way to use existing facilities without the need for any new equipment in distribution networks to achieve various objectives such as: power loss reduction, feeder overload reduction, load balancing, voltage profile improvement, reducing the number of switching considering constraints that ultimately result in the power loss reduction. In this paper, a new method based on the Ant Lion algorithm (a modern meta-heuristic algorithm is provided for the reconfiguration of distribution networks. Considering the extension of the distribution networks and complexity of their communications networks, and the various parameters, using smart techniques is inevitable. The proposed approach is tested on the IEEE 33 & 69-bus radial standard distribution networks. The Evaluation of results in MATLAB software shows the effectiveness of the Ant Lion algorithm in the distribution network reconfiguration.
High time resolution reconstruction of electron temperature profiles with a neural network in C-2U
Player, Gabriel; Magee, Richard; Trask, Erik; Korepanov, Sergey; Clary, Ryan; Tri Alpha Energy Team
2017-10-01
One of the most important parameters governing fast ion dynamics in a plasma is the electron temperature, as the fast ion-electron collision rate goes as νei Te3 / 2 . Unfortunately, the electron temperature is difficult to directly measure-methods relying on high-powered laser pulses or fragile probes lead to limited time resolution or measurements restricted to the edge. In order to rectify the lack of time resolution on the Thomson scattering data in the core, a type of learning algorithm, specifically a neural network, was implemented. This network uses 3 hidden layers to correlate information from nearly 250 signals, including magnetics, interferometers, and several arrays of bolometers, with Thomson scattering data over the entire C-2U database, totalling nearly 20,000 samples. The network uses the Levenberg-Marquardt algorithm with Bayesian regularization to learn from the large number of samples and inputs how to accurately reconstruct the entire electron temperature time history at a resolution of 500 kHz, a huge improvement over the 2 time points per shot provided by Thomson scattering. These results can be used in many different types of analysis and plasma characterization-in this work, we use the network to quantify electron heating.
Indian Academy of Sciences (India)
positive numbers. The word 'algorithm' was most often associated with this algorithm till 1950. It may however be pOinted out that several non-trivial algorithms such as synthetic (polynomial) division have been found in Vedic Mathematics which are dated much before Euclid's algorithm. A programming language Is used.
Gabbay-Benziv, R; Oliveira, N; Baschat, A A
2016-01-01
To compare performance of multimarker algorithm, risk profiles and their sequential application in prediction of preeclampsia and determining potential intervention targets. Maternal characteristics, ultrasound variables and serum biomarkers were collected prospectively at first trimester. Univariate analysis identified preeclampsia associated variables followed by logistic regression analysis to determine the prediction rule. Combined characteristics of the cardiovascular, metabolic and the personal risk factors were compared to the multimarker algorithm and the sequential application of both methods. Out of 2433 women, 108 developed preeclampsia (4.4%). Probability scores considering nulliparity, prior preeclampsia, body mass index, diastolic blood pressure and placental growth factor had an area under the receiver operating characteristic curve 0.784 (95% CI = 0.721-0.847). While the multimarker algorithm had the lowest false negative rate, sequential application of cardiovascular and metabolic risk profiles in screen positives reduced false positives by 26% and identified blood pressure and metabolic risk in 49/54 (91%) women with subsequent preeclampsia as treatable risk factors. Sequential application of a multimarker algorithm followed by determination of treatable risk factors in screen positive women is the optimal approach for first trimester preeclampsia prediction and identification of women that may benefit from targeted metabolic or cardiovascular treatment. © 2015 John Wiley & Sons, Ltd. © 2015 John Wiley & Sons, Ltd.
Torres López, Sara; José Villalain, Juan; Casas, Antonio; El ouardi, Hmidou; Moussaid, Bennacer; Ruiz-Martínez, Vicente Carlos
2017-04-01
Remagnetization data are used in this work to obtain the palinspastic reconstruction at 100 (Ma) of one of the most studied profiles of the Central High Atlas: the Midelt-Errachidia cross-section (Morocco). Previous studies in the area on syn-rift sedimentary rocks of subsiding basins have revealed that the Mesozoic sediments of this region acquired a pervasive remagnetization at the end of the Early Cretaceous. Fifty-eight sites (470 samples) corresponding to black limestones, marly limestones and marls, Early to Middle Jurassic in age, have been studied. Sites are distributed along a 70 km transect cutting across the basin and perpendicular to the main structures. The magnetic properties of samples are very regular showing very high NRM. Thermal and AF demagnetization showed a single stable paleomagnetic component with unblocking temperatures and coercivities spectra of 300-475°C and 20-100 mT respectively. This characteristic remanent magnetization (ChRM) showed systematically normal polarity suggesting a widespread remagnetization. In spite of the good outcrops and the relatively well-constrained structure of the High Atlas, there are many tectonic problems still unsolved, as the controversial existence of intra-Mesozoic deformation episodes. The restoration of paleomagnetic vectors to the remagnetization acquisition stage (100 Ma) allows to determine the dip of the beds during this period and, thereby, to obtain a reconstruction of structures during that time. This reconstruction accounts for the relative contribution of Mesozoic transpressional/transtrenssional movements vs. Cenozoic compression to the present-day dip. The results obtained indicate that these structures have undergone different degrees of pre-late Cretaceous deformation and were re-activated during the Cenozoic compression to finally acquire their present-day geometry.
Nguyen, Nam-Ninh; Srihari, Sriganesh; Leong, Hon Wai; Chong, Ket-Fah
2015-10-01
Determining the entire complement of enzymes and their enzymatic functions is a fundamental step for reconstructing the metabolic network of cells. High quality enzyme annotation helps in enhancing metabolic networks reconstructed from the genome, especially by reducing gaps and increasing the enzyme coverage. Currently, structure-based and network-based approaches can only cover a limited number of enzyme families, and the accuracy of homology-based approaches can be further improved. Bottom-up homology-based approach improves the coverage by rebuilding Hidden Markov Model (HMM) profiles for all known enzymes. However, its clustering procedure relies firmly on BLAST similarity score, ignoring protein domains/patterns, and is sensitive to changes in cut-off thresholds. Here, we use functional domain architecture to score the association between domain families and enzyme families (Domain-Enzyme Association Scoring, DEAS). The DEAS score is used to calculate the similarity between proteins, which is then used in clustering procedure, instead of using sequence similarity score. We improve the enzyme annotation protocol using a stringent classification procedure, and by choosing optimal threshold settings and checking for active sites. Our analysis shows that our stringent protocol EnzDP can cover up to 90% of enzyme families available in Swiss-Prot. It achieves a high accuracy of 94.5% based on five-fold cross-validation. EnzDP outperforms existing methods across several testing scenarios. Thus, EnzDP serves as a reliable automated tool for enzyme annotation and metabolic network reconstruction. Available at: www.comp.nus.edu.sg/~nguyennn/EnzDP .
Chen, Shanqiu; Dong, LiZhi; Chen, XiaoJun; Tan, Yi; Liu, Wenjin; Wang, Shuai; Yang, Ping; Xu, Bing; Ye, YuTang
2016-04-10
Adaptive optics is an important technology for improving beam quality in solid-state slab lasers. However, there are uncorrectable aberrations in partial areas of the beam. In the criterion of the conventional least-squares reconstruction method, it makes the zones with small aberrations nonsensitive and hinders this zone from being further corrected. In this paper, a weighted least-squares reconstruction method is proposed to improve the relative sensitivity of zones with small aberrations and to further improve beam quality. Relatively small weights are applied to the zones with large residual aberrations. Comparisons of results show that peak intensity in the far field improved from 1242 analog digital units (ADU) to 2248 ADU, and beam quality β improved from 2.5 to 2.0. This indicates the weighted least-squares method has better performance than the least-squares reconstruction method when there are large zonal uncorrectable aberrations in the slab laser system.
Farias, Heric D.; Sebem, Renan; Paterno, Aleksander S.
2014-08-01
This work reports results from the development of a software to process the parameters involved in the characterization of fiber taper profiles, while using optical microscopy, a high-definition camera and a high- precision translation stage as the moveable base on which the taper is positioned. In addition to this procedure, image processing algorithms were customized to process the acquired images. With edge detection algorithms in the stitched image, one would be able to characterize the given taper radius curve that represents the taper profile when the camera has a sufficient resolution. As a consequence, the proposed fiber taper characterization procedure is a first step towards a high-resolution characterization of fiber taper diameters with arbitrary profiles, specially this case, in which tapers are fabricated with the stepwise technique that allows the production of non- biconical profiles. The parameters of the stitched images depends on the used microscope objective and the length of the characterized tapers. A non-biconical arbitrary taper is measured as an example for the illustration of the developed software and procedure.
Comparison of MAX-DOAS profiling algorithms during CINDI-2 - Part 1: aerosols
Friess, Udo; Hendrick, Francois; Tirpitz, Jan-Lukas; Apituley, Arnoud; van Roozendael, Michel; Kreher, Karin; Richter, Andreas; Wagner, Thomas
2017-04-01
The second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) took place at the Cabauw Experimental Site for Atmospheric Research (CESAR; Utrecht area, The Netherlands) from 25 August until 7 October 2016. CINDI-2 was aiming at assessing the consistency of MAX-DOAS slant column density measurements of tropospheric species (NO2, HCHO, O3, and O4) relevant for the validation of future ESA atmospheric Sentinel missions, through coordinated operation of a large number of DOAS and MAXDOAS instruments from all over the world. An important objective of the campaign was to study the relationship between remote-sensing column and profile measurements of the above species and collocated reference ancillary observations. For this purpose, the CINDI-2 Profiling Task Team (CPTT) was created, involving 22 groups performing aerosol and trace gas vertical profile inversion using dedicated MAX-DOAS profiling algorithms, as well as the teams responsible for ancillary profile and surface concentration measurements (NO2 analysers, NO2 sondes, NO2 and Raman LIDARs, CAPS, Long-Path DOAS, sun photometer, nephelometer, etc). The main purpose of the CPTT is to assess the consistency of the different profiling tools for retrieving aerosol extinction and trace gas vertical profiles through comparison exercises using commonly defined settings and to validate the retrievals with correlative observations. In this presentation, we give an overview of the MAX-DOAS vertical profile comparison results, focusing on the retrieval of aerosol extinction profiles, with the trace gas retrievals being presented in a companion abstract led by F. Hendrick. The performance of the different algorithms is investigated with respect to the variable visibility and cloud conditions encountered during the campaign. The consistency between optimal-estimation-based and parameterized profiling tools is also evaluated for these different conditions, together with the level of agreement
Nishiyama, Yukako; Tada, Keiji; Nishiyama, Yuichi; Mori, Hiroshi; Maruyama, Mitsunari; Katsube, Takashi; Yamamoto, Nobuko; Kanayama, Hidekazu; Yamamoto, Yasushi; Kitagaki, Hajime
2016-11-01
Some iterative reconstruction algorithms are useful for reducing the radiation dose in pediatric cardiac CT. A new iterative reconstruction algorithm (forward-projected model-based iterative reconstruction solution) has been developed, but its usefulness for radiation dose reduction in pediatric cardiac CT is unknown. To investigate the effect of the new algorithm on CT image quality and on radiation dose in pediatric cardiac CT. We obtained phantom data at six dose levels, as well as pediatric cardiac CT data, and reconstructed CT images using filtered back projection, adaptive iterative dose reduction 3-D (AIDR 3-D) and the new algorithm. We evaluated phantom image quality using physical assessment. Four radiologists performed visual evaluation of cardiac CT image quality. In the phantom study, the new algorithm effectively suppressed noise in the low-dose range and moderately generated modulation transfer function, yielding a higher signal-to-noise ratio compared with filtered back projection or AIDR 3-D. When clinical cardiac CT was performed, images obtained by the new method had less perceived image noise and better tissue contrast at similar resolution compared with AIDR 3-D images. The new algorithm reduced image noise at moderate resolution in low-dose CT scans and improved the perceived quality of cardiac CT images to some extent. This new algorithm might be superior to AIDR 3-D for radiation dose reduction in pediatric cardiac CT.
Roerdink, J.B.T.M.; Zwaan, M.
1993-01-01
This paper is concerned with some mathematical aspects of magnetic resonance imaging (MRI) of the beating human heart. In particular we investigate the so-called retrospective gating technique which is a non-triggered technique for data acquisition and reconstruction of (approximately) periodically
Directory of Open Access Journals (Sweden)
Zacharias Kamarianakis
2014-07-01
Full Text Available This paper presents the architecture of a software platform implemented in C++, for the purpose of testing and evaluation of reconstruction algorithms in X-ray imaging. The fundamental elements of the platform are classes, tightened together in a logical hierarchy. Real world objects as an X-ray source or a flat detector can be defined and implemented as instances of corresponding classes. Various operations (e.g. 3D transformations, loading, saving, filtering of images, creation of planar or curved objects of various dimensions have been incorporated in the software tool as class methods, as well. The user can easily set up any arrangement of the imaging chain objects in 3D space and experiment with many different trajectories and configurations. Selected 3D volume reconstructions using simulated data acquired in specific scanning trajectories are used as a demonstration of the tool. The platform is considered as a basic tool for future investigations of new reconstruction methods in combination with various scanning configurations.
Solomon, Justin; Ba, Alexandre; Bochud, François; Samei, Ehsan
2016-12-01
To use novel voxel-based 3D printed textured phantoms in order to compare low-contrast detectability between two reconstruction algorithms, FBP (filtered-backprojection) and SAFIRE (sinogram affirmed iterative reconstruction) and determine what impact background texture (i.e., anatomical noise) has on estimating the dose reduction potential of SAFIRE. Liver volumes were segmented from 23 abdominal CT cases. The volumes were characterized in terms of texture features from gray-level co-occurrence and run-length matrices. Using a 3D clustered lumpy background (CLB) model, a fitting technique based on a genetic optimization algorithm was used to find CLB textures that were reflective of the liver textures, accounting for CT system factors of spatial blurring and noise. With the modeled background texture as a guide, four cylindrical phantoms (Textures A-C and uniform, 165 mm in diameter, and 30 mm height) were designed, each containing 20 low-contrast spherical signals (6 mm diameter at nominal contrast levels of ∼3.2, 5.2, 7.2, 10, and 14 HU with four repeats per signal). The phantoms were voxelized and input into a commercial multimaterial 3D printer (Object Connex 350), with custom software for voxel-based printing (using principles of digital dithering). Images of the textured phantoms and a corresponding uniform phantom were acquired at six radiation dose levels (SOMATOM Flash, Siemens Healthcare) and observer model detection performance (detectability index of a multislice channelized Hotelling observer) was estimated for each condition (5 contrasts × 6 doses × 2 reconstructions × 4 backgrounds = 240 total conditions). A multivariate generalized regression analysis was performed (linear terms, no interactions, random error term, log link function) to assess whether dose, reconstruction algorithm, signal contrast, and background type have statistically significant effects on detectability. Also, fitted curves of detectability (averaged across contrast levels
Comparison of MAX-DOAS profiling algorithms during CINDI-2 - Part 2: trace gases
Hendrick, Francois; Friess, Udo; Tirpitz, Lukas; Apituley, Arnoud; Van Roozendael, Michel; Kreher, Karin; Richter, Andreas; Wagner, Thomas
2017-04-01
The second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) took place at the Cabauw Experimental Site for Atmospheric Research (CESAR; Utrecht area, The Netherlands) from 25 August until 7 October 2016. CINDI-2 was aiming at assessing the consistency of MAX-DOAS slant column density measurements of tropospheric species (NO2, HCHO, O3, and O4) relevant for the validation of future ESA atmospheric Sentinel missions, through coordinated operation of a large number of DOAS and MAXDOAS instruments from all over the world. An important objective of the campaign was to study the relationship between remote-sensing column and profile measurements of the above species and collocated reference ancillary observations. For this purpose, the CINDI-2 Profiling Task Team (CPTT) was created, involving 22 groups performing aerosol and trace gas vertical profile inversion using dedicated MAX-DOAS profiling algorithms, as well as the teams responsible for ancillary profile and surface concentration measurements (NO2 analysers, NO2 sondes, NO2 and Raman LIDARs, CAPS, Long-Path DOAS, sunphotometer, nephelometer, etc). The main purpose of the CPTT is to assess the consistency of the different profiling tools for retrieving aerosol extinction and trace gas vertical profiles through comparison exercises using commonly defined settings and to validate the retrievals with correlative observations. In this presentation, we give an overview of the MAX-DOAS vertical profile comparison results, focusing on NO2 and HCHO, the aerosol retrievals being presented in a companion abstract led by U. Frieß. The performance of the different algorithms is investigated with respect to the various sky and weather conditions and aerosol loadings encountered during the campaign. The consistency between optimal-estimation-based and parameterized profiling tools is also evaluated for these different conditions, together with the level of agreement with available NO2 and
Indian Academy of Sciences (India)
In the description of algorithms and programming languages, what is the role of control abstraction? • What are the inherent limitations of the algorithmic processes? In future articles in this series, we will show that these constructs are powerful and can be used to encode any algorithm. In the next article, we will discuss ...
Kudo, Hiroyuki; Nemoto, Takuya; Takaki, Keita
2016-01-01
This paper concerns iterative reconstruction for low-dose and few-view CT by minimizing a data-fidelity term regularized with the Total Variation (TV) penalty. We propose a very fast iterative algorithm to solve this problem. The algorithm derivation is outlined as follows. First, the original minimization problem is reformulated into the saddle point (primal-dual) problem by using the Lagrangian duality, to which we apply the first-order primal-dual iterative methods. Second, we precondition the iteration formula using the ramp flter of Filtered Backprojection (FBP) reconstruction algorithm in such a way that the problem solution is not altered. The resulting algorithm resembles the structure of so-called iterative FBP algorithm, and it converges to the exact minimizer of cost function very fast.
Kudo, Hiroyuki; Yamazaki, Fukashi; Nemoto, Takuya; Takaki, Keita
2016-10-01
This paper concerns iterative reconstruction for low-dose and few-view CT by minimizing a data-fidelity term regularized with the Total Variation (TV) penalty. We propose a very fast iterative algorithm to solve this problem. The algorithm derivation is outlined as follows. First, the original minimization problem is reformulated into the saddle point (primal-dual) problem by using the Lagrangian duality, to which we apply the first-order primal-dual iterative methods. Second, we precondition the iteration formula using the ramp filter of Filtered Backprojection (FBP) reconstruction algorithm in such a way that the problem solution is not altered. The resulting algorithm resembles the structure of so-called iterative FBP algorithm, and it converges to the exact minimizer of cost function very fast.
Armstrong, Ian S; Hoffmann, Sandra A
2016-11-01
The interest in quantitative single photon emission computer tomography (SPECT) shows potential in a number of clinical applications and now several vendors are providing software and hardware solutions to allow 'SUV-SPECT' to mirror metrics used in PET imaging. This brief technical report assesses the accuracy of activity concentration measurements using a new algorithm 'xSPECT' from Siemens Healthcare. SPECT/CT data were acquired from a uniform cylinder with 5, 10, 15 and 20 s/projection and NEMA image quality phantom with 25 s/projection. The NEMA phantom had hot spheres filled with an 8 : 1 activity concentration relative to the background compartment. Reconstructions were performed using parameters defined by manufacturer presets available with the algorithm. The accuracy of activity concentration measurements was assessed. A dose calibrator-camera cross-calibration factor (CCF) was derived from the uniform phantom data. In uniform phantom images, a positive bias was observed, ranging from ∼6% in the lower count images to ∼4% in the higher-count images. On the basis of the higher-count data, a CCF of 0.96 was derived. As expected, considerable negative bias was measured in the NEMA spheres using region mean values whereas positive bias was measured in the four largest NEMA spheres. Nonmonotonically increasing recovery curves for the hot spheres suggested the presence of Gibbs edge enhancement from resolution modelling. Sufficiently accurate activity concentration measurements can easily be measured on images reconstructed with the xSPECT algorithm without a CCF. However, the use of a CCF is likely to improve accuracy further. A manual conversion of voxel values into SUV should be possible, provided that the patient weight, injected activity and time between injection and imaging are all known accurately.
Dunet, Vincent; Hachulla, Anne-Lise; Grimm, Jochen; Beigelman-Aubry, Catherine
2016-01-01
Background Model-based iterative reconstruction (MBIR) reduces image noise and improves image quality (IQ) but its influence on post-processing tools including maximal intensity projection (MIP) and minimal intensity projection (mIP) remains unknown. Purpose To evaluate the influence on IQ of MBIR on native, mIP, MIP axial and coronal reformats of reduced dose computed tomography (RD-CT) chest acquisition. Material and Methods Raw data of 50 patients, who underwent a standard dose CT (SD-CT) and a follow-up RD-CT with a CT dose index (CTDI) of 2–3 mGy, were reconstructed by MBIR and FBP. Native slices, 4-mm-thick MIP, and 3-mm-thick mIP axial and coronal reformats were generated. The relative IQ, subjective IQ, image noise, and number of artifacts were determined in order to compare different reconstructions of RD-CT with reference SD-CT. Results The lowest noise was observed with MBIR. RD-CT reconstructed by MBIR exhibited the best relative and subjective IQ on coronal view regardless of the post-processing tool. MBIR generated the lowest rate of artefacts on coronal mIP/MIP reformats and the highest one on axial reformats, mainly represented by distortions and stairsteps artifacts. Conclusion The MBIR algorithm reduces image noise but generates more artifacts than FBP on axial mIP and MIP reformats of RD-CT. Conversely, it significantly improves IQ on coronal views, without increasing artifacts, regardless of the post-processing technique. PMID:27635253
Kordolaimi, Sofia D; Saradeas, Ioannis; Ploussi, Agapi; Pantos, Ioannis; Argentos, Stylianos; Efstathopoulos, Efstathios P
2014-10-01
The purpose of this study is to introduce an efficient method for the optimization of iterative reconstruction CT protocols based on phantom image analysis and the comparison of obtained results with actual patient data. We considered chest, abdomen, and pelvis CT examinations before the installation of an iterative reconstruction algorithm (iDose4) to define the exposure parameters used in clinical routine with filtered back projection (FBP). The body area of a CT phantom was subsequently scanned with various tube voltages and tube currents-exposure time products, and acquired data were reconstructed with FBP and different levels of iDose4. The contrast-to-noise ratio (CNR) for FBP with the original exposure parameters was calculated to define the minimum acceptable CNR value for each tube voltage. Then, an optimum tube current-exposure time products for each tube voltage and level of iterative reconstruction was estimated. We also compared findings derived by the phantom with real patient data by assessing dosimetric and image quality indexes from a patient cohort scanned with exposure parameters gradually adjusted during 1 year of adoption of iDose4. By use of the proposed phantom method, dose reduction up to 75% was achievable, whereas for an intermediate level of iteration (level 4), the dose reduction ranged between 50% and 60%, depending on the tube voltage. For comparison, with the gradual adjustment of exposure settings, the corresponding dose reduction for the same level of iteration was about 35%. The proposed method provides rapid and efficient optimization of CT protocols and could be used as the first step in the optimization process.
Energy Technology Data Exchange (ETDEWEB)
Angelis, G I; Kotasidis, F A; Matthews, J C [Imaging, Proteomics and Genomics, MAHSC, University of Manchester, Wolfson Molecular Imaging Centre, Manchester (United Kingdom); Reader, A J [Montreal Neurological Institute, McGill University, Montreal (Canada); Lionheart, W R, E-mail: georgios.angelis@mmic.man.ac.uk [School of Mathematics, University of Manchester, Alan Turing Building, Manchester (United Kingdom)
2011-07-07
Iterative expectation maximization (EM) techniques have been extensively used to solve maximum likelihood (ML) problems in positron emission tomography (PET) image reconstruction. Although EM methods offer a robust approach to solving ML problems, they usually suffer from slow convergence rates. The ordered subsets EM (OSEM) algorithm provides significant improvements in the convergence rate, but it can cycle between estimates converging towards the ML solution of each subset. In contrast, gradient-based methods, such as the recently proposed non-monotonic maximum likelihood (NMML) and the more established preconditioned conjugate gradient (PCG), offer a globally convergent, yet equally fast, alternative to OSEM. Reported results showed that NMML provides faster convergence compared to OSEM; however, it has never been compared to other fast gradient-based methods, like PCG. Therefore, in this work we evaluate the performance of two gradient-based methods (NMML and PCG) and investigate their potential as an alternative to the fast and widely used OSEM. All algorithms were evaluated using 2D simulations, as well as a single [{sup 11}C]DASB clinical brain dataset. Results on simulated 2D data show that both PCG and NMML achieve orders of magnitude faster convergence to the ML solution compared to MLEM and exhibit comparable performance to OSEM. Equally fast performance is observed between OSEM and PCG for clinical 3D data, but NMML seems to perform poorly. However, with the addition of a preconditioner term to the gradient direction, the convergence behaviour of NMML can be substantially improved. Although PCG is a fast convergent algorithm, the use of a (bent) line search increases the complexity of the implementation, as well as the computational time involved per iteration. Contrary to previous reports, NMML offers no clear advantage over OSEM or PCG, for noisy PET data. Therefore, we conclude that there is little evidence to replace OSEM as the algorithm of choice
The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes
Directory of Open Access Journals (Sweden)
Yu Xin
2009-04-01
Full Text Available Abstract Background A computational method (called p53HMM is presented that utilizes Profile Hidden Markov Models (PHMMs to estimate the relative binding affinities of putative p53 response elements (REs, both p53 single-sites and cluster-sites. These models incorporate a novel "Corresponded Baum-Welch" training algorithm that provides increased predictive power by exploiting the redundancy of information found in the repeated, palindromic p53-binding motif. The predictive accuracy of these new models are compared against other predictive models, including position specific score matrices (PSSMs, or weight matrices. We also present a new dynamic acceptance threshold, dependent upon a putative binding site's distance from the Transcription Start Site (TSS and its estimated binding affinity. This new criteria for classifying putative p53-binding sites increases predictive accuracy by reducing the false positive rate. Results Training a Profile Hidden Markov Model with corresponding positions matching a combined-palindromic p53-binding motif creates the best p53-RE predictive model. The p53HMM algorithm is available on-line: http://tools.csb.ias.edu Conclusion Using Profile Hidden Markov Models with training methods that exploit the redundant information of the homotetramer p53 binding site provides better predictive models than weight matrices (PSSMs. These methods may also boost performance when applied to other transcription factor binding sites.
Barbre, Robert E., Jr.
2012-01-01
This paper presents the process used by the Marshall Space Flight Center Natural Environments Branch (EV44) to quality control (QC) data from the Kennedy Space Center's 50-MHz Doppler Radar Wind Profiler for use in vehicle wind loads and steering commands. The database has been built to mitigate limitations of using the currently archived databases from weather balloons. The DRWP database contains wind measurements from approximately 2.7-18.6 km altitude at roughly five minute intervals for the August 1997 to December 2009 period of record, and the extensive QC process was designed to remove spurious data from various forms of atmospheric and non-atmospheric artifacts. The QC process is largely based on DRWP literature, but two new algorithms have been developed to remove data contaminated by convection and excessive first guess propagations from the Median Filter First Guess Algorithm. In addition to describing the automated and manual QC process in detail, this paper describes the extent of the data retained. Roughly 58% of all possible wind observations exist in the database, with approximately 100 times as many complete profile sets existing relative to the EV44 balloon databases. This increased sample of near-continuous wind profile measurements may help increase launch availability by reducing the uncertainty of wind changes during launch countdown
Directory of Open Access Journals (Sweden)
Weijian Si
2015-01-01
Full Text Available A novel direction of arrival (DOA estimation method in compressed sensing (CS is proposed, in which the DOA estimation problem is cast as the joint sparse reconstruction from multiple measurement vectors (MMV. The proposed method is derived through transforming quadratically constrained linear programming (QCLP into unconstrained convex optimization which overcomes the drawback that l1-norm is nondifferentiable when sparse sources are reconstructed by minimizing l1-norm. The convergence rate and estimation performance of the proposed method can be significantly improved, since the steepest descent step and Barzilai-Borwein step are alternately used as the search step in the unconstrained convex optimization. The proposed method can obtain satisfactory performance especially in these scenarios with low signal to noise ratio (SNR, small number of snapshots, or coherent sources. Simulation results show the superior performance of the proposed method as compared with existing methods.
Performance of the reconstruction algorithms of the FIRST experiment pixel sensors vertex detector
Rescigno, R; Juliani, D; Spiriti, E; Baudot, J; Abou-Haidar, Z; Agodi, C; Alvarez, M A G; Aumann, T; Battistoni, G; Bocci, A; Böhlen, T T; Boudard, A; Brunetti, A; Carpinelli, M; Cirrone, G A P; Cortes-Giraldo, M A; Cuttone, G; De Napoli, M; Durante, M; Gallardo, M I; Golosio, B; Iarocci, E; Iazzi, F; Ickert, G; Introzzi, R; Krimmer, J; Kurz, N; Labalme, M; Leifels, Y; Le Fevre, A; Leray, S; Marchetto, F; Monaco, V; Morone, M C; Oliva, P; Paoloni, A; Patera, V; Piersanti, L; Pleskac, R; Quesada, J M; Randazzo, N; Romano, F; Rossi, D; Rousseau, M; Sacchi, R; Sala, P; Sarti, A; Scheidenberger, C; Schuy, C; Sciubba, A; Sfienti, C; Simon, H; Sipala, V; Tropea, S; Vanstalle, M; Younis, H
2014-01-01
Hadrontherapy treatments use charged particles (e.g. protons and carbon ions) to treat tumors. During a therapeutic treatment with carbon ions, the beam undergoes nuclear fragmentation processes giving rise to significant yields of secondary charged particles. An accurate prediction of these production rates is necessary to estimate precisely the dose deposited into the tumours and the surrounding healthy tissues. Nowadays, a limited set of double differential carbon fragmentation cross-section is available. Experimental data are necessary to benchmark Monte Carlo simulations for their use in hadrontherapy. The purpose of the FIRST experiment is to study nuclear fragmentation processes of ions with kinetic energy in the range from 100 to 1000 MeV/u. Tracks are reconstructed using information from a pixel silicon detector based on the CMOS technology. The performances achieved using this device for hadrontherapy purpose are discussed. For each reconstruction step (clustering, tracking and vertexing), different...
Performance of the ATLAS track reconstruction algorithms in dense environments in LHC Run 2
Energy Technology Data Exchange (ETDEWEB)
Aaboud, M. [Univ. Mohamed Premier et LPTPM, Oujda (Morocco). Faculte des Sciences; Aad, G. [CPPM, Aix-Marseille Univ. et CNRS/IN2P3, Marseille (France); Abbott, B. [Oklahoma Univ., Norman, OK (United States). Homer L. Dodge Dept. of Physics and Astronomy; Collaboration: ATLAS Collaboration; and others
2017-10-15
With the increase in energy of the Large Hadron Collider to a centre-of-mass energy of 13 TeV for Run 2, events with dense environments, such as in the cores of high-energy jets, became a focus for new physics searches as well as measurements of the Standard Model. These environments are characterized by charged-particle separations of the order of the tracking detectors sensor granularity. Basic track quantities are compared between 3.2 fb{sup -1} of data collected by the ATLAS experiment and simulation of proton-proton collisions producing high-transverse-momentum jets at a centre-of-mass energy of 13 TeV. The impact of charged-particle separations and multiplicities on the track reconstruction performance is discussed. The track reconstruction efficiency in the cores of jets with transverse momenta between 200 and 1600 GeV is quantified using a novel, data-driven, method. The method uses the energy loss, dE/dx, to identify pixel clusters originating from two charged particles. Of the charged particles creating these clusters, the measured fraction that fail to be reconstructed is 0.061 ± 0.006(stat.) ± 0.014(syst.) and 0.093 ± 0.017(stat.) ± 0.021(syst.) for jet transverse momenta of 200-400 GeV and 1400-1600 GeV, respectively. (orig.)
Isotope computed tomography using cone-beam geometry: a comparison of two reconstruction algorithms.
Horsman, A; Sutcliffe, J; Burkinshaw, L; Wild, P; Skilling, J; Webb, S
1987-10-01
A CT scanner has been constructed specifically to determine the three-dimensional distribution of bone mineral in the medullary cavities of the radius, ulna and femur. A source of x-rays (153Gd) and a multiwire proportional counter (MWPC) are mounted at opposite ends of a diameter of an annular mounting. The limb is placed on the axis of rotation of the annulus and a series of two-dimensional transmission projections are obtained at equal angular spacings over 360 degrees. The distribution of bone mineral is reconstructed from the projections either by the method of maximum entropy (ME) or by convolution and back projection (CBP). These two methods have been evaluated by reconstructing a single slice of a phantom, representing the forearm, from projections simulated by computer. With a clinically acceptable exposure time, the mean medullary densities of the ulna and radius were determined with systematic errors of less than 3.5% (ME) and 11% (CBP), although for the latter method of reconstruction the systematic error was reduced to less than 2% by increasing the number of views. The mean medullary densities of the ulna and radius were determined with precisions better than 2.5% (ME) and 3.5% (CBP).
Performance of the ATLAS track reconstruction algorithms in dense environments in LHC Run 2.
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Su, J; Suchek, S; Sugaya, Y; Suk, M; Sulin, V V; Sultan, Dms; Sultansoy, S; Sumida, T; Sun, S; Sun, X; Suruliz, K; Suster, C J E; Sutton, M R; Suzuki, S; Svatos, M; Swiatlowski, M; Swift, S P; Sykora, I; Sykora, T; Ta, D; Tackmann, K; Taenzer, J; Taffard, A; Tafirout, R; Tahirovic, E; Taiblum, N; Takai, H; Takashima, R; Takasugi, E H; Takeshita, T; Takubo, Y; Talby, M; Talyshev, A A; Tanaka, J; Tanaka, M; Tanaka, R; Tanaka, S; Tanioka, R; Tannenwald, B B; Tapia Araya, S; Tapprogge, S; Tarem, S; Tartarelli, G F; Tas, P; Tasevsky, M; Tashiro, T; Tassi, E; Tavares Delgado, A; Tayalati, Y; Taylor, A C; Taylor, G N; Taylor, P T E; Taylor, W; Teixeira-Dias, P; Temple, D; Ten Kate, H; Teng, P K; Teoh, J J; Tepel, F; Terada, S; Terashi, K; Terron, J; Terzo, S; Testa, M; Teuscher, R J; Theveneaux-Pelzer, T; Thomas, J P; Thomas-Wilsker, J; Thompson, P D; Thompson, A S; Thomsen, L A; Thomson, E; Tibbetts, M J; Ticse Torres, R E; Tikhomirov, V O; Tikhonov, Yu A; Timoshenko, S; Tipton, P; Tisserant, S; Todome, K; Todorova-Nova, S; Tojo, J; Tokár, S; Tokushuku, K; Tolley, E; Tomlinson, L; Tomoto, M; Tompkins, L; Toms, K; Tong, B; Tornambe, P; Torrence, E; Torres, H; Torró Pastor, E; Toth, J; Touchard, F; Tovey, D R; Treado, C J; Trefzger, T; Tresoldi, F; Tricoli, A; Trigger, I M; Trincaz-Duvoid, S; Tripiana, M F; Trischuk, W; Trocmé, B; Trofymov, A; Troncon, C; Trottier-McDonald, M; Trovatelli, M; Truong, L; Trzebinski, M; Trzupek, A; Tsang, K W; Tseng, J C-L; Tsiareshka, P V; Tsipolitis, G; Tsirintanis, N; Tsiskaridze, S; Tsiskaridze, V; Tskhadadze, E G; Tsui, K M; Tsukerman, I I; Tsulaia, V; Tsuno, S; Tsybychev, D; Tu, Y; Tudorache, A; Tudorache, V; Tulbure, T T; Tuna, A N; Tupputi, S A; Turchikhin, S; Turgeman, D; Turk Cakir, I; Turra, R; Tuts, P M; Ucchielli, G; Ueda, I; Ughetto, M; Ukegawa, F; Unal, G; Undrus, A; Unel, G; Ungaro, F C; Unno, Y; Unverdorben, C; Urban, J; Urquijo, P; Urrejola, P; Usai, G; Usui, J; Vacavant, L; Vacek, V; Vachon, B; Vadla, K O H; Vaidya, A; Valderanis, C; Valdes Santurio, E; Valente, M; Valentinetti, S; Valero, A; Valéry, L; Valkar, S; Vallier, A; Valls Ferrer, J A; Van Den Wollenberg, W; van der Graaf, H; van Gemmeren, P; Van Nieuwkoop, J; van Vulpen, I; van Woerden, M C; Vanadia, M; Vandelli, W; Vaniachine, A; Vankov, P; Vardanyan, G; Vari, R; Varnes, E W; Varni, C; Varol, T; Varouchas, D; Vartapetian, A; Varvell, K E; Vasquez, J G; Vasquez, G A; Vazeille, F; Vazquez Schroeder, T; Veatch, J; Veeraraghavan, V; Veloce, L M; Veloso, F; Veneziano, S; Ventura, A; Venturi, M; Venturi, N; Venturini, A; Vercesi, V; Verducci, M; Verkerke, W; Vermeulen, A T; Vermeulen, J C; Vetterli, M C; Viaux Maira, N; Viazlo, O; Vichou, I; Vickey, T; Vickey Boeriu, O E; Viehhauser, G H A; Viel, S; Vigani, L; Villa, M; Villaplana Perez, M; Vilucchi, E; Vincter, M G; Vinogradov, V B; Vishwakarma, A; Vittori, C; Vivarelli, I; Vlachos, S; Vlasak, M; Vogel, M; Vokac, P; Volpi, G; von der Schmitt, H; von Toerne, E; Vorobel, V; Vorobev, K; Vos, M; Voss, R; Vossebeld, J H; Vranjes, N; Vranjes Milosavljevic, M; Vrba, V; Vreeswijk, M; Vuillermet, R; Vukotic, I; Wagner, P; Wagner, W; Wagner-Kuhr, J; Wahlberg, H; Wahrmund, S; Wakabayashi, J; Walder, J; Walker, R; Walkowiak, W; Wallangen, V; Wang, C; Wang, C; Wang, F; Wang, H; Wang, H; Wang, J; Wang, J; Wang, Q; Wang, R; Wang, S M; Wang, T; Wang, W; Wang, W; Wang, Z; Wanotayaroj, C; Warburton, A; Ward, C P; Wardrope, D R; Washbrook, A; Watkins, P M; Watson, A T; Watson, M F; Watts, G; Watts, S; Waugh, B M; Webb, A F; Webb, S; Weber, M S; Weber, S W; Weber, S A; Webster, J S; Weidberg, A R; Weinert, B; Weingarten, J; Weirich, M; Weiser, C; Weits, H; Wells, P S; Wenaus, T; Wengler, T; Wenig, S; Wermes, N; Werner, M D; Werner, P; Wessels, M; Weston, T D; Whalen, K; Whallon, N L; Wharton, A M; White, A S; White, A; White, M J; White, R; Whiteson, D; Whitmore, B W; Wickens, F J; Wiedenmann, W; Wielers, M; Wiglesworth, C; Wiik-Fuchs, L A M; Wildauer, A; Wilk, F; Wilkens, H G; Williams, H H; Williams, S; Willis, C; Willocq, S; Wilson, J A; Wingerter-Seez, I; Winkels, E; Winklmeier, F; Winston, O J; Winter, B T; Wittgen, M; Wobisch, M; Wolf, T M H; Wolff, R; Wolter, M W; Wolters, H; Wong, V W S; Worm, S D; Wosiek, B K; Wotschack, J; Wozniak, K W; Wu, M; Wu, S L; Wu, X; Wu, Y; Wyatt, T R; Wynne, B M; Xella, S; Xi, Z; Xia, L; Xu, D; Xu, L; Yabsley, B; Yacoob, S; Yamaguchi, D; Yamaguchi, Y; Yamamoto, A; Yamamoto, S; Yamanaka, T; Yamatani, M; Yamauchi, K; Yamazaki, Y; Yan, Z; Yang, H; Yang, H; Yang, Y; Yang, Z; Yao, W-M; Yap, Y C; Yasu, Y; Yatsenko, E; Yau Wong, K H; Ye, J; Ye, S; Yeletskikh, I; Yigitbasi, E; Yildirim, E; Yorita, K; Yoshihara, K; Young, C; Young, C J S; Yu, J; Yu, J; Yuen, S P Y; Yusuff, I; Zabinski, B; Zacharis, G; Zaidan, R; Zaitsev, A M; Zakharchuk, N; Zalieckas, J; Zaman, A; Zambito, S; Zanzi, D; Zeitnitz, C; Zemaityte, G; Zemla, A; Zeng, J C; Zeng, Q; Zenin, O; Ženiš, T; Zerwas, D; Zhang, D; Zhang, F; Zhang, G; Zhang, H; Zhang, J; Zhang, L; Zhang, L; Zhang, M; Zhang, P; Zhang, R; Zhang, R; Zhang, X; Zhang, Y; Zhang, Z; Zhao, X; Zhao, Y; Zhao, Z; Zhemchugov, A; Zhou, B; Zhou, C; Zhou, L; Zhou, M; Zhou, M; Zhou, N; Zhu, C G; Zhu, H; Zhu, J; Zhu, Y; Zhuang, X; Zhukov, K; Zibell, A; Zieminska, D; Zimine, N I; Zimmermann, C; Zimmermann, S; Zinonos, Z; Zinser, M; Ziolkowski, M; Živković, L; Zobernig, G; Zoccoli, A; Zou, R; Zur Nedden, M; Zwalinski, L
2017-01-01
With the increase in energy of the Large Hadron Collider to a centre-of-mass energy of 13 [Formula: see text] for Run 2, events with dense environments, such as in the cores of high-energy jets, became a focus for new physics searches as well as measurements of the Standard Model. These environments are characterized by charged-particle separations of the order of the tracking detectors sensor granularity. Basic track quantities are compared between 3.2 fb[Formula: see text] of data collected by the ATLAS experiment and simulation of proton-proton collisions producing high-transverse-momentum jets at a centre-of-mass energy of 13 [Formula: see text]. The impact of charged-particle separations and multiplicities on the track reconstruction performance is discussed. The track reconstruction efficiency in the cores of jets with transverse momenta between 200 and 1600 [Formula: see text] is quantified using a novel, data-driven, method. The method uses the energy loss, [Formula: see text], to identify pixel clusters originating from two charged particles. Of the charged particles creating these clusters, the measured fraction that fail to be reconstructed is [Formula: see text] and [Formula: see text] for jet transverse momenta of 200-400 [Formula: see text] and 1400-1600 [Formula: see text], respectively.
Energy Technology Data Exchange (ETDEWEB)
Li, Si; Xu, Yuesheng, E-mail: yxu06@syr.edu [Guangdong Provincial Key Laboratory of Computational Science, School of Mathematics and Computational Sciences, Sun Yat-sen University, Guangzhou 510275 (China); Zhang, Jiahan; Lipson, Edward [Department of Physics, Syracuse University, Syracuse, New York 13244 (United States); Krol, Andrzej; Feiglin, David [Department of Radiology, SUNY Upstate Medical University, Syracuse, New York 13210 (United States); Schmidtlein, C. Ross [Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States); Vogelsang, Levon [Carestream Health, Rochester, New York 14608 (United States); Shen, Lixin [Guangdong Provincial Key Laboratory of Computational Science, School of Mathematics and Computational Sciences, Sun Yat-sen University, Guangzhou 510275, China and Department of Mathematics, Syracuse University, Syracuse, New York 13244 (United States)
2015-08-15
Purpose: The authors have recently developed a preconditioned alternating projection algorithm (PAPA) with total variation (TV) regularizer for solving the penalized-likelihood optimization model for single-photon emission computed tomography (SPECT) reconstruction. This algorithm belongs to a novel class of fixed-point proximity methods. The goal of this work is to investigate how PAPA performs while dealing with realistic noisy SPECT data, to compare its performance with more conventional methods, and to address issues with TV artifacts by proposing a novel form of the algorithm invoking high-order TV regularization, denoted as HOTV-PAPA, which has been explored and studied extensively in the present work. Methods: Using Monte Carlo methods, the authors simulate noisy SPECT data from two water cylinders; one contains lumpy “warm” background and “hot” lesions of various sizes with Gaussian activity distribution, and the other is a reference cylinder without hot lesions. The authors study the performance of HOTV-PAPA and compare it with PAPA using first-order TV regularization (TV-PAPA), the Panin–Zeng–Gullberg one-step-late method with TV regularization (TV-OSL), and an expectation–maximization algorithm with Gaussian postfilter (GPF-EM). The authors select penalty-weights (hyperparameters) by qualitatively balancing the trade-off between resolution and image noise separately for TV-PAPA and TV-OSL. However, the authors arrived at the same penalty-weight value for both of them. The authors set the first penalty-weight in HOTV-PAPA equal to the optimal penalty-weight found for TV-PAPA. The second penalty-weight needed for HOTV-PAPA is tuned by balancing resolution and the severity of staircase artifacts. The authors adjust the Gaussian postfilter to approximately match the local point spread function of GPF-EM and HOTV-PAPA. The authors examine hot lesion detectability, study local spatial resolution, analyze background noise properties, estimate mean
Directory of Open Access Journals (Sweden)
Ramon Barber
2014-02-01
Full Text Available Nowadays the automobile industry is becoming more and more demanding as far as quality is concerned. Within the wide variety of processes in which this quality must be ensured, those regarding the squeezing of the auto bodywork are especially important due to the fact that the quality of the resulting product is tested manually by experts, leading to inaccuracies of all types. In this paper, an algorithm is proposed for the automated evaluation of the imperfections in the sheets of the bodywork after the squeezing process. The algorithm processes the profile signals from a retroreflective image and characterizes an imperfection. It is based on a convergence criterion that follows the line of the maximum gradient of the imperfection and gives its geometrical characteristics as a result: maximum gradient, length, width, and area.
Barber, Ramon; Zwilling, Valerie; Salichs, Miguel A.
2014-01-01
Nowadays the automobile industry is becoming more and more demanding as far as quality is concerned. Within the wide variety of processes in which this quality must be ensured, those regarding the squeezing of the auto bodywork are especially important due to the fact that the quality of the resulting product is tested manually by experts, leading to inaccuracies of all types. In this paper, an algorithm is proposed for the automated evaluation of the imperfections in the sheets of the bodywork after the squeezing process. The algorithm processes the profile signals from a retroreflective image and characterizes an imperfection. It is based on a convergence criterion that follows the line of the maximum gradient of the imperfection and gives its geometrical characteristics as a result: maximum gradient, length, width, and area. PMID:24504105
Low-profile 1-piece bifrontal craniotomy for anterior skull base approach and reconstruction.
Ozlen, Fatma; Abuzayed, Bashar; Dashti, Reza; Isler, Cihan; Tanriover, Necmettin; Sanus, Galip Zihni
2010-01-01
The anterior skull base is a location of many pathologic lesions. These pathologic lesions are treated by bifrontal craniotomy and anterior skull base approach, either primarily or combined with facial osteotomies. To obtain wide exposure, low-profile craniotomies are preferred. In this article, we attempt to describe our own technique of frontal craniotomy for anterior skull base approach. In this technique, the frontal bone, frontal sinus, and the superior supraorbital bar are elevated in en bloc fashion. Bicoronal skin incision is followed by dissection and retraction of the skin flap in the epigaleal plan. The pericranial galeal flap is dissected separately in subperiosteal fashion until the superior orbital rim. After dissection and retraction of the tip of the temporal muscles, bilateral pterional key burr holes and 1 or 2 parasagittal burr holes are opened. The sagittal burr hole(s) is placed in the point where the upper horizontal surface of the frontal bone slopes vertically downward the forehead. With the craniotome rotating tip (Midas F2/8TA23, Medtronic Inc, Ft Worth, TX), bone cut is made between the pterional key burr holes, passing through the superior orbital bar and the anterior wall of the frontal sinus. To minimize the brain retraction, the operating microscope is placed beside the head, and exposure from the lateral view angle is obtained. Reconstruction of the defect is performed by using pericranial galeal flap and/or Cortoss (Orthovita, Malvern, PA). With this approach, wide exposure of the anterior skull base pathologic lesions was achieved with minimal brain retraction. In the postoperative period, patients tolerated this approach well with favorable functional and cosmetic outcomes. No infections or adverse effects related to this technique or Cortoss were observed. Anterior skull base pathologic lesions can be widely exposed by low-profile bicoronal craniotomy and anterior skull base approach with minimal brain retraction. This wide
A Direct Numerical Reconstruction Algorithm for the 3D Calderón Problem
DEFF Research Database (Denmark)
Delbary, Fabrice; Hansen, Per Christian; Knudsen, Kim
2011-01-01
In three dimensions Calderón's problem was addressed and solved in theory in the 1980s in a series of papers, but only recently the numerical implementation of the algorithm was initiated. The main ingredients in the solution of the problem are complex geometrical optics solutions to the conducti...
1990-06-01
are Q-conjugate (i.e. piTApj = 0 for all i~j). The algorithm that accomplishes this task was originally discovered by Hestenes and Stiefel [75]. An...511 C. B. Wason , .1. I,. Black, and G. A. King, "Seismic Modeling and Inversion." Proc. IEEE. vol. 72, no. 10, pp. 1385-1393. Oct. 1984. (52] N
Directory of Open Access Journals (Sweden)
A. Rozanov
2007-09-01
Full Text Available This paper is devoted to an intercomparison of ozone vertical profiles retrieved from the measurements of scattered solar radiation performed by the SCIAMACHY instrument in the limb viewing geometry. Three different inversion algorithms including the prototype of the operational Level 1 to 2 processor to be operated by the European Space Agency are considered. Unlike usual validation studies, this comparison removes the uncertainties arising when comparing measurements made by different instruments probing slightly different air masses and focuses on the uncertainties specific to the modeling-retrieval problem only. The intercomparison was performed for 5 selected orbits of SCIAMACHY showing a good overall agreement of the results in the middle stratosphere, whereas considerable discrepancies were identified in the lower stratosphere and upper troposphere altitude region. Additionally, comparisons with ground-based lidar measurements are shown for selected profiles demonstrating an overall correctness of the retrievals.
Singular value decomposition-based reconstruction algorithm for seismic traveltime tomography.
Song, L P; Zhang, S Y
1999-01-01
A reconstruction method is given for seismic transmission traveltime tomography. The method is implemented via the combinations of singular value decomposition, appropriate weighting matrices, and variable regularization parameter. The problem is scaled through the weighting matrices so that the singular spectrum is normalized. Matching the normalized singular values, a regularization parameter varies within the interval [0, 1], and linearly increases with singular value index from a small, initial value rather than a fixed one to eliminate the impacts of smaller singular values' components. The experimental results show that the proposed method is superior to the ordinary singular value decomposition (SVD) methods such as truncated SVD and Tikhonov regularization.
Dodge, Cristina T; Tamm, Eric P; Cody, Dianna D; Liu, Xinming; Jensen, Corey T; Wei, Wei; Kundra, Vikas; Rong, X John
2016-03-08
The purpose of this study was to characterize image quality and dose performance with GE CT iterative reconstruction techniques, adaptive statistical iterative recontruction (ASiR), and model-based iterative reconstruction (MBIR), over a range of typical to low-dose intervals using the Catphan 600 and the anthropomorphic Kyoto Kagaku abdomen phantoms. The scope of the project was to quantitatively describe the advantages and limitations of these approaches. The Catphan 600 phantom, supplemented with a fat-equivalent oval ring, was scanned using a GE Discovery HD750 scanner at 120 kVp, 0.8 s rotation time, and pitch factors of 0.516, 0.984, and 1.375. The mA was selected for each pitch factor to achieve CTDIvol values of 24, 18, 12, 6, 3, 2, and 1 mGy. Images were reconstructed at 2.5 mm thickness with filtered back-projection (FBP); 20%, 40%, and 70% ASiR; and MBIR. The potential for dose reduction and low-contrast detectability were evaluated from noise and contrast-to-noise ratio (CNR) measurements in the CTP 404 module of the Catphan. Hounsfield units (HUs) of several materials were evaluated from the cylinder inserts in the CTP 404 module, and the modulation transfer function (MTF) was calculated from the air insert. The results were con-firmed in the anthropomorphic Kyoto Kagaku abdomen phantom at 6, 3, 2, and 1mGy. MBIR reduced noise levels five-fold and increased CNR by a factor of five compared to FBP below 6mGy CTDIvol, resulting in a substantial improvement in image quality. Compared to ASiR and FBP, HU in images reconstructed with MBIR were consistently lower, and this discrepancy was reversed by higher pitch factors in some materials. MBIR improved the conspicuity of the high-contrast spatial resolution bar pattern, and MTF quantification confirmed the superior spatial resolution performance of MBIR versus FBP and ASiR at higher dose levels. While ASiR and FBP were relatively insensitive to changes in dose and pitch, the spatial resolution for MBIR
Maier, Joscha; Sawall, Stefan; Kachelrieß, Marc
2014-05-01
Phase-correlated microcomputed tomography (micro-CT) imaging plays an important role in the assessment of mouse models of cardiovascular diseases and the determination of functional parameters as the left ventricular volume. As the current gold standard, the phase-correlated Feldkamp reconstruction (PCF), shows poor performance in case of low dose scans, more sophisticated reconstruction algorithms have been proposed to enable low-dose imaging. In this study, the authors focus on the McKinnon-Bates (MKB) algorithm, the low dose phase-correlated (LDPC) reconstruction, and the high-dimensional total variation minimization reconstruction (HDTV) and investigate their potential to accurately determine the left ventricular volume at different dose levels from 50 to 500 mGy. The results were verified in phantom studies of a five-dimensional (5D) mathematical mouse phantom. Micro-CT data of eight mice, each administered with an x-ray dose of 500 mGy, were acquired, retrospectively gated for cardiac and respiratory motion and reconstructed using PCF, MKB, LDPC, and HDTV. Dose levels down to 50 mGy were simulated by using only a fraction of the projections. Contrast-to-noise ratio (CNR) was evaluated as a measure of image quality. Left ventricular volume was determined using different segmentation algorithms (Otsu, level sets, region growing). Forward projections of the 5D mouse phantom were performed to simulate a micro-CT scan. The simulated data were processed the same way as the real mouse data sets. Compared to the conventional PCF reconstruction, the MKB, LDPC, and HDTV algorithm yield images of increased quality in terms of CNR. While the MKB reconstruction only provides small improvements, a significant increase of the CNR is observed in LDPC and HDTV reconstructions. The phantom studies demonstrate that left ventricular volumes can be determined accurately at 500 mGy. For lower dose levels which were simulated for real mouse data sets, the HDTV algorithm shows the
Energy Technology Data Exchange (ETDEWEB)
Maier, Joscha, E-mail: joscha.maier@dkfz.de [Medical Physics in Radiology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg (Germany); Sawall, Stefan; Kachelrieß, Marc [Medical Physics in Radiology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany and Institute of Medical Physics, University of Erlangen–Nürnberg, 91052 Erlangen (Germany)
2014-05-15
Purpose: Phase-correlated microcomputed tomography (micro-CT) imaging plays an important role in the assessment of mouse models of cardiovascular diseases and the determination of functional parameters as the left ventricular volume. As the current gold standard, the phase-correlated Feldkamp reconstruction (PCF), shows poor performance in case of low dose scans, more sophisticated reconstruction algorithms have been proposed to enable low-dose imaging. In this study, the authors focus on the McKinnon-Bates (MKB) algorithm, the low dose phase-correlated (LDPC) reconstruction, and the high-dimensional total variation minimization reconstruction (HDTV) and investigate their potential to accurately determine the left ventricular volume at different dose levels from 50 to 500 mGy. The results were verified in phantom studies of a five-dimensional (5D) mathematical mouse phantom. Methods: Micro-CT data of eight mice, each administered with an x-ray dose of 500 mGy, were acquired, retrospectively gated for cardiac and respiratory motion and reconstructed using PCF, MKB, LDPC, and HDTV. Dose levels down to 50 mGy were simulated by using only a fraction of the projections. Contrast-to-noise ratio (CNR) was evaluated as a measure of image quality. Left ventricular volume was determined using different segmentation algorithms (Otsu, level sets, region growing). Forward projections of the 5D mouse phantom were performed to simulate a micro-CT scan. The simulated data were processed the same way as the real mouse data sets. Results: Compared to the conventional PCF reconstruction, the MKB, LDPC, and HDTV algorithm yield images of increased quality in terms of CNR. While the MKB reconstruction only provides small improvements, a significant increase of the CNR is observed in LDPC and HDTV reconstructions. The phantom studies demonstrate that left ventricular volumes can be determined accurately at 500 mGy. For lower dose levels which were simulated for real mouse data sets, the
Energy Technology Data Exchange (ETDEWEB)
Stolzmann, Paul [Massachusetts General Hospital and Harvard Medical School, Cardiac MR PET CT Program, Boston, MA (United States); University Hospital Zurich, Institute of Diagnostic and Interventional Radiology, Zurich (Switzerland); Schlett, Christopher L.; Maurovich-Horvat, Pal; Scheffel, Hans; Engel, Leif-Christopher; Karolyi, Mihaly; Hoffmann, Udo [Massachusetts General Hospital and Harvard Medical School, Cardiac MR PET CT Program, Boston, MA (United States); Maehara, Akiko; Ma, Shixin; Mintz, Gary S. [Columbia University Medical Center, Cardiovascular Research Foundation, New York, NY (United States)
2012-10-15
To systematically assess inter-technique and inter-/intra-reader variability of coronary CT angiography (CTA) to measure plaque burden compared with intravascular ultrasound (IVUS) and to determine whether iterative reconstruction algorithms affect variability. IVUS and CTA data were acquired from nine human coronary arteries ex vivo. CT images were reconstructed using filtered back projection (FBPR) and iterative reconstruction algorithms: adaptive-statistical (ASIR) and model-based (MBIR). After co-registration of 284 cross-sections between IVUS and CTA, two readers manually delineated the cross-sectional plaque area in all images presented in random order. Average plaque burden by IVUS was 63.7 {+-} 10.7% and correlated significantly with all CTA measurements (r = 0.45-0.52; P < 0.001), while CTA overestimated the burden by 10 {+-} 10%. There were no significant differences among FBPR, ASIR and MBIR (P > 0.05). Increased overestimation was associated with smaller plaques, eccentricity and calcification (P < 0.001). Reproducibility of plaque burden by CTA and IVUS datasets was excellent with a low mean intra-/inter-reader variability of <1/<4% for CTA and <0.5/<1% for IVUS respectively (P < 0.05) with no significant difference between CT reconstruction algorithms (P > 0.05). In ex vivo coronary arteries, plaque burden by coronary CTA had extremely low inter-/intra-reader variability and correlated significantly with IVUS measurements. Accuracy as well as reader reliability were independent of CT image reconstruction algorithm. (orig.)
An alternating direction algorithm for total variation reconstruction of distributed parameters.
Brás, Nuno B; Bioucas-Dias, J; Martins, Raul C; Serra, A C
2012-06-01
Augmented Lagrangian variational formulations and alternating optimization have been adopted to solve distributed parameter estimation problems. The alternating direction method of multipliers (ADMM) is one of such formulations/optimization methods. Very recently, the number of applications of the ADMM, or variants of it, to solve inverse problems in image and signal processing has increased at an exponential rate. The reason for this interest is that ADMM decomposes a difficult optimization problem into a sequence of much simpler problems. In this paper, we use the ADMM to reconstruct piecewise-smooth distributed parameters of elliptical partial differential equations from noisy and linear (blurred) observations of the underlying field. The distributed parameters are estimated by solving an inverse problem with total variation (TV) regularization. The proposed instance of the ADMM solves, in each iteration, an l(2) and a decoupled l(2) - l(1) optimization problems. An operator splitting is used to simplify the treatment of the TV regularizer, avoiding its smooth approximation and yielding a simple yet effective ADMM reconstruction method compared with previously proposed approaches. The competitiveness of the proposed method, with respect to the state-of-the-art, is illustrated in simulated 1-D and 2-D elliptical equation problems, which are representative of many real applications.
CERN. Geneva
2012-01-01
The processing of data acquired by the CMS detector at LHC is carried out with an object-oriented C++ software framework: CMSSW. With the increasing luminosity delivered by the LHC, the treatment of recorded data requires extraordinary large computing resources, also in terms of CPU usage. A possible solution to cope with this task is the exploitation of the features offered by the latest microprocessor architectures. Modern CPUs present several vector units, the capacity of which is growing steadily with the introduction of new processor generations. Moreover, an increasing number of cores per die is offered by the main vendors, even on consumer hardware. Most recent C++ compilers provide facilities to take advantage of such innovations, either by explicit statements in the programs’ sources or automatically adapting the generated machine instructions to the available hardware, without the need of modifying the existing code base. Programming techniques to implement reconstruction algorithms and optimised ...
An improved reconstruction algorithm based on multi-user detection for uplink grant-free NOMA
Directory of Open Access Journals (Sweden)
Hou Chengyan
2017-01-01
Full Text Available For the traditional orthogonal matching pursuit(OMP algorithm in multi-user detection(MUD for uplink grant-free NOMA, here is a poor BER performance, so in this paper we propose an temporal-correlation orthogonal matching pursuit algorithm(TOMP to realize muli-user detection. The core idea of the TOMP is to use the time correlation of the active user sets to achieve user activity and data detection in a number of continuous time slots. We use the estimated active user set in the current time slot as a priori information to estimate the active user sets for the next slot. By maintaining the active user set Tˆl of size K(K is the number of users, but modified in each iteration. Specifically, active user set is believed to be reliable in one iteration but shown error in another iteration, can be added to the set path delay Tˆl or removed from it. Theoretical analysis of the improved algorithm provide a guarantee that the multi-user can be successfully detected with a high probability. The simulation results show that the proposed scheme can achieve better bit error rate (BER performance in the uplink grant-free NOMA system.
Indian Academy of Sciences (India)
, i is referred to as the loop-index, 'stat-body' is any sequence of ... while i ~ N do stat-body; i: = i+ 1; endwhile. The algorithm for sorting the numbers is described in Table 1 and the algorithmic steps on a list of 4 numbers shown in. Figure 1.
Benz, Dominik C; Fuchs, Tobias A; Gräni, Christoph; Studer Bruengger, Annina A; Clerc, Olivier F; Mikulicic, Fran; Messerli, Michael; Stehli, Julia; Possner, Mathias; Pazhenkottil, Aju P; Gaemperli, Oliver; Kaufmann, Philipp A; Buechel, Ronny R
2017-02-15
Iterative reconstruction (IR) algorithms allow for a significant reduction in radiation dose of coronary computed tomography angiography (CCTA). We performed a head-to-head comparison of adaptive statistical IR (ASiR) and model-based IR (MBIR) algorithms to assess their impact on quantitative image parameters and diagnostic accuracy for submillisievert CCTA. CCTA datasets of 91 patients were reconstructed using filtered back projection (FBP), increasing contributions of ASiR (20, 40, 60, 80, and 100%), and MBIR. Signal and noise were measured in the aortic root to calculate signal-to-noise ratio (SNR). In a subgroup of 36 patients, diagnostic accuracy of ASiR 40%, ASiR 100%, and MBIR for diagnosis of coronary artery disease (CAD) was compared with invasive coronary angiography. Median radiation dose was 0.21 mSv for CCTA. While increasing levels of ASiR gradually reduced image noise compared with FBP (up to - 48%, P ASiR (-59% compared with ASiR 100%; P ASiR 40% and ASiR 100% resulted in substantially lower diagnostic accuracy to detect CAD as diagnosed by invasive coronary angiography compared with MBIR: sensitivity and specificity were 100 and 37%, 100 and 57%, and 100 and 74% for ASiR 40%, ASiR 100%, and MBIR, respectively. MBIR offers substantial noise reduction with increased SNR, paving the way for implementation of submillisievert CCTA protocols in clinical routine. In contrast, inferior noise reduction by ASiR negatively affects diagnostic accuracy of submillisievert CCTA for CAD detection.
Yang, X.; Strahler, A. H.; Schaaf, C.; Li, Z.; Yao, T.; Zhao, F.; Wang, Z.; Woodcock, C. E.; Jupp, D.; Culvenor, D.; Newnham, G.; Lovell, J.
2012-12-01
This study presents a new methodology to directly retrieve two important biophysical parameters, Leaf Area Index (LAI; m^2) and Foliage Area Volume Density (FAVD; m^2 LAI/m^3 volume) profiles through the voxelization of point-cloud forest reconstructions from multiple ground-based full-waveform Echidna® lidar scans. Previous studies have verified that estimates of LAI and FAVD made from single EVI scans, using azimuth-averaged gap probability with zenith angle (Jupp et al. 2009; Zhao et al. 2011), agree well with those of traditional hemispherical photos and LAI-2000 measurements. Strahler et al. (2008) and Yang et al. (2012) established a paradigm for the 3-D reconstruction of forest stands using a full-waveform, ground-based, scanning lidar by merging point clouds constructed from overlapping EVI scans, thereby allowing virtual direct representation of forest biomass. Classification procedures (Yang et al. 2012), based on the shape of the laser pulse returned to the instrument, can separate trunk from foliage scattering events. Volumetric datasets are produced by properly assigning attributes, such as gap probability, apparent reflectance, and volume associated with the laser pulse footprint at the observed range, to the foliage scattering events in the reconstructed point cloud. Leaf angle distribution is accommodated with a simple model based on gap probability with zenith angle as observed in individual scans of the stand. Clumping occurring at scales coarser than elemental volumes associated with scattering events is observed directly and therefore does not require parametric correction. For validation, comparisons are made between LAI and FAVD profiles retrieved directly from the voxelized 3-D forest reconstructions and those observed from airborne and field measurements. The voxelized 3-D forest reconstructions derived from EVI point clouds provide a pathway to estimate "ground truth" FAVD, LAI, and above-ground biomass without destructive sampling. These
Gassenmaier, Tobias; Allmendinger, Thomas; Kunz, Andreas S; Veyhl-Wichmann, Maike; Ergün, Süleyman; Bley, Thorsten A; Petritsch, Bernhard
2017-05-01
Coronary artery calcium (CAC) scoring is a widespread tool for cardiac risk assessment in asymptomatic patients and accompanying possible adverse effects, i.e. radiation exposure, should be as low as reasonably achievable. To evaluate a new iterative reconstruction (IR) algorithm for dose reduction of in vitro coronary artery calcium scoring at different tube currents. An anthropomorphic calcium scoring phantom was scanned in different configurations simulating slim, average-sized, and large patients. A standard calcium scoring protocol was performed on a third-generation dual-source CT at 120 kVp tube voltage. Reference tube current was 80 mAs as standard and stepwise reduced to 60, 40, 20, and 10 mAs. Images were reconstructed with weighted filtered back projection (wFBP) and a new version of an established IR kernel at different strength levels. Calcifications were quantified calculating Agatston and volume scores. Subjective image quality was visualized with scans of an ex vivo human heart. In general, Agatston and volume scores remained relatively stable between 80 and 40 mAs and increased at lower tube currents, particularly in the medium and large phantom. IR reduced this effect, as both Agatston and volume scores decreased with increasing levels of IR compared to wFBP (P tube current of 10 mAs with resulting Agatston levels close to the reference settings. New iterative reconstruction kernels may allow for reduction in tube current for established Agatston scoring protocols and consequently for substantial reduction in radiation exposure.
Energy Technology Data Exchange (ETDEWEB)
Tan, Cheng-Yang; /Fermilab
2011-02-01
A bootstrap algorithm for reconstructing the temporal signal from four of its fractional Fourier intensity spectra in the presence of noise is described. An optical arrangement is proposed which realises the bootstrap method for the measurement of ultrashort laser pulses. The measurement of short laser pulses which are less than 1 ps is an ongoing challenge in optical physics. One reason is that no oscilloscope exists today which can directly measure the time structure of these pulses and so it becomes necessary to invent other techniques which indirectly provide the necessary information for temporal pulse reconstruction. One method called FROG (frequency resolved optical gating) has been in use since 19911 and is one of the popular methods for recovering these types of short pulses. The idea behind FROG is the use of multiple time-correlated pulse measurements in the frequency domain for the reconstruction. Multiple data sets are required because only intensity information is recorded and not phase, and thus by collecting multiple data sets, there is enough redundant measurements to yield the original time structure, but not necessarily uniquely (or even up to an arbitrary constant phase offset). The objective of this paper is to describe another method which is simpler than FROG. Instead of collecting many auto-correlated data sets, only two spectral intensity measurements of the temporal signal are needed in the absence of noise. The first can be from the intensity components of its usual Fourier transform and the second from its FrFT (fractional Fourier transform). In the presence of noise, a minimum of four measurements are required with the same FrFT order but with two different apertures. Armed with these two or four measurements, a unique solution up to a constant phase offset can be constructed.
Reconstructing Lifetime Chemical Profiles of Baleen Whales Using Earplugs: A Century of Stress
Trumble, S. J.; Usenko, S.
2016-02-01
The usefulness of an animal as an ecosystem model or sentinel is contingent upon their ecological diversity and the variability inherent in their ecosystem. Marine mammals rely on healthy marine ecosystems for their survival and are uniquely suited to reflect ecosystem variability and degradation. Therefore, they are prime sentinels of marine ecosystem change. Typically used as a measure of aging in cetaceans (order Mysticeti), earplugs can produce alternating dark and light lamina and remain undisturbed during the lifetime of the animal. An earplug is a keratin and lipid matrix in the auditory meatus of mysticetes whales that appears to increase with age. While the literature on earwax plug ageing has often used vague and inconsistent terminology, Roe (1968) clearly established the link between mysticete migration patterns and lamina formation by examining the most recently formed lamina in fin whale earplugs collected in all months of the year, finding a high fat content and keratinized epithelial. Thus, earplugs may provide an excellent repository of lipophilic substances (hormones) and chemicals. Earplugs collected from museum holdings have been analyzed for chemical profiles revealing unprecedented information on stress hormones from as early as the 1870s through present day. For example, a bowhead whale earplug collected in 2013 and aged at 65 years revealed cortisol lifetime profiles (mean, 1.6 ± 5.0 ng/g; range; 0.1-40.0 ng/g) with the largest peaks corresponding to age 13 and 19 (c. 1961 and 1967). Cortisol levels returned to baseline throughout life with increased deviation from baseline occurring post 1990s. Pregnancy hormones revealed approximately 12 possible pregnancy/birth events with an interval mean of 3.8 years (progesterone mean, 3.5 ± 1.7 ng/g; estradiol mean 0.9 ± 0.8 ng/g). The use of a whale earplug to reconstruct lifetime chemical profiles will allow for a more comprehensive examination of stress, development, and contaminant exposure, as
The OMPS Limb Profiler Instrument: An Alternative Data Analysis and Retrieval Algorithm
Rault, Didier F.; Lumpe, Jerry; Eden, Thomas
2009-01-01
The upcoming Ozone Mapper and Profiler Suite (OMPS), which will be launched on the NPOESS Preparatory Project (NPP) platform in early 2011, will continue monitoring the global distribution of the Earth's middle atmosphere ozone and aerosol. OMPS is composed of three instruments, namely the Total Column Mapper (heritage: TOMS, OMI), the Nadir Profiler (heritage: SBUV) and the Limb Profiler (heritage: SOLSE/LORE, OSIRIS, SCIAMACHY, SAGE III). The ultimate goal of the mission is to better understand and quantify the rate of stratospheric ozone recovery. The focus of the paper will be on the Limb Profiler (LP) instrument. The LP instrument will measure the Earth fs limb radiance (which is due to the scattering of solar photons by air molecules, aerosol and Earth surface) in the ultra-violet (UV), visible and near infrared, from 285 to 1000 nm. The LP simultaneously images the whole vertical extent of the Earth's limb through three vertical slits, each covering a vertical tangent height range of 100 km and each horizontally spaced by 250 km in the cross-track direction. The focal plane of the LP spectrometer is a two ]dimensional CCD array comprised of 340 x 740 pixels. Several data analysis tools are presently being constructed and tested to retrieve ozone and aerosol vertical distribution from limb radiance measurements. The primary NASA algorithm is based on earlier algorithms developed for the SOLSE/LORE and SAGE III limb scatter missions. The paper will describe an alternative algorithm which will retrieve ozone density and aerosol extinction directly from radiance data collected on individual CCD pixels. This alternative method uses an optimal estimation approach to retrieve ozone and aerosol in the 10-60 km range from the information contained within an ensemble of about 50000 down-linked pixels. Tangent height registration is performed using the Rayleigh Scattering Attitude Sensor (RSAS) technique applied to columns of pixels in the 340-360 nm range. Cloud
Seismic noise: inversion of velocity profile using a non linear algorithm
Wathelet, M.; Jongmans, D.
2003-04-01
For site effect assessment a good knowledge of the shear wave velocity profile is of prime importance. It can be deduced from the dispersive property of the surface waves present in the noise wave-field or artificially generated. This inversion is not straightforward as different ground models have the same phase velocity curve in the observed frequency range. Moreover the uncertainties on the phase velocity obtained by available processing techniques drastically increase the non unicity of the problem. Widely used iterative linear algorithms initiated by a starting model lead to only one optimal solution that could be a local minimum of the misfit function. In order to investigate the parameter space we implement a direct search algorithm (Neighborhood, M. Sambridge,1999) to inverse the velocity profile. However, in spite of their performance, the direct search algorithms partially reproduce the ensemble of possible good solutions. Different possibilities to help the inversion process are considered. We introduce a priori on the compressional wave velocities in the misfit computations, which could be acquired from refraction tests. Also, adding the inversion of the Rayleigh ellipticity leads to a better constrain of the layer's depth (Scherbaum et al., in press). At low frequency join inversion of both Rayleigh and Love modes could significantly improve the resolution which is usually poor when considering the vertical component alone. This method has been successfully tested on various synthetics in order to estimate its ability to reproduce the original models. Several sites selected in Belgium for the availability of geological and geotechnical data were deeply investigated with ambient vibration measurements (Lennartz 5 seconds and geophones), refraction tomography and surface wave inversion from hammer and explosive shots, and the coherency of the proposed approach has been validated. Study developed within the SESAME European Project.
Energy Technology Data Exchange (ETDEWEB)
Rampado, O., E-mail: orampado@molinette.piemonte.it [S.C. Fisica Sanitaria, San Giovanni Battista Hospital of Turin, Corso Bramante 88, Torino 10126 (Italy); Bossi, L., E-mail: laura-bossi@hotmail.it [S.C. Fisica Sanitaria, San Giovanni Battista Hospital of Turin, Corso Bramante 88, Torino 10126 (Italy); Garabello, D., E-mail: dgarabello@molinette.piemonte.it [S.C. Radiodiagnostica DEA, San Giovanni Battista Hospital of Turin, Corso Bramante 88, Torino 10126 (Italy); Davini, O., E-mail: odavini@molinette.piemonte.it [S.C. Radiodiagnostica DEA, San Giovanni Battista Hospital of Turin, Corso Bramante 88, Torino 10126 (Italy); Ropolo, R., E-mail: rropolo@molinette.piemonte.it [S.C. Fisica Sanitaria, San Giovanni Battista Hospital of Turin, Corso Bramante 88, Torino 10126 (Italy)
2012-11-15
Objective: This study aims to investigate the consequences on dose and image quality of the choices of different combinations of NI and adaptive statistical iterative reconstruction (ASIR) percentage, the image quality parameters of GE CT equipment. Methods: An anthropomorphic phantom was used to simulate the chest and upper abdomen of a standard weight patient. Images were acquired with tube current modulation and different values of noise index, in the range 10-22 for a slice thickness of 5 mm and a tube voltage of 120 kV. For each selected noise index, several image series were reconstructed using different percentages of ASIR (0, 40, 50, 60, 70, 100). Quantitative noise was assessed at different phantom locations. Computed tomography dose index (CTDI) and dose length products (DLP) were recorded. Three radiologists reviewed the images in a blinded and randomized manner and assessed the subjective image quality by comparing the image series with the one acquired with the reference protocol (noise index 14, ASIR 40%). The perceived noise, contrast, edge sharpness and overall quality were graded on a scale from -2 (much worse) to +2 (much better). Results: A repeatable trend of noise reduction versus the percentage of ASIR was observed for different noise levels and phantom locations. The different combinations of noise index and percentage of ASIR to obtain a desired dose reduction were assessed. The subjective image quality evaluation evidenced a possible dose reduction between 24 and 40% as a consequence of an increment of ASIR percentage to 50 or 70%, respectively. Conclusion: These results highlighted that the same patient dose reduction can be obtained with several combinations of noise index and percentages of ASIR, providing a model with which to choose these acquisition parameters in future optimization studies, with the aim of reducing patient dose by maintaining image quality in diagnostic levels.
Li, Liang; Chen, Zhiqiang; Zhao, Ziran; Wu, Dufan
2013-01-01
At present, there are mainly three x-ray imaging modalities for dental clinical diagnosis: radiography, panorama and computed tomography (CT). We develop a new x-ray digital intra-oral tomosynthesis (IDT) system for quasi-three-dimensional dental imaging which can be seen as an intermediate modality between traditional radiography and CT. In addition to normal x-ray tube and digital sensor used in intra-oral radiography, IDT has a specially designed mechanical device to complete the tomosynthesis data acquisition. During the scanning, the measurement geometry is such that the sensor is stationary inside the patient's mouth and the x-ray tube moves along an arc trajectory with respect to the intra-oral sensor. Therefore, the projection geometry can be obtained without any other reference objects, which makes it be easily accepted in clinical applications. We also present a compressed sensing-based iterative reconstruction algorithm for this kind of intra-oral tomosynthesis. Finally, simulation and experiment were both carried out to evaluate this intra-oral imaging modality and algorithm. The results show that IDT has its potentiality to become a new tool for dental clinical diagnosis.
Energy Technology Data Exchange (ETDEWEB)
Kang, H.L.; Lao, J.B. [Department of Physics, Shantou University, Shantou 515063, Guangdong (China); Li, Z.P.; Yao, W.Q. [Analysis Center of Tsinghua University, Beijing 100084 (China); Liu, C. [Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083 (China); Wang, J.Y., E-mail: wangjy@stu.edu.cn [Department of Physics, Shantou University, Shantou 515063, Guangdong (China)
2016-12-01
Highlights: • GaAs/AlAs superlattice multilayered structure is reconstructed. • Measured depth profiling data are quantitatively analyzed. • Depth resolution and interface roughness values are quantitatively evaluated. - Abstract: The GaAs/AlAs superlattice multilayer structures were deposited on GaAs (1 0 0) substrates by molecular beam epitaxial (MBE) technique. The as-prepared samples were characterized respectively by Auger Electron Spectroscopy (AES) and Secondary Ion Mass Spectroscopy (SIMS) depth profiling techniques. The measured depth profiles were then fitted by the Mixing-Roughness-Information (MRI) model. The depth resolution values for both depth profiling techniques were evaluated quantitatively from the fitted MRI parameters and the as-prepared GaAs/AlAs multilayer structure was determined accordingly.
Wang, Chuan-Chuan; Fang, Yi-Bin; Zhang, Ping; ZHU, XUAN; Hong, Bo; Xu, Yi; Liu, Jian-Min; Huang, Qing-Hai
2017-01-01
Introduction The Low-profile Visualized Intraluminal Support (LVIS) device is a new generation of self-expanding braided stent recently introduced in China for stent assisted coiling of intracranial aneurysms. The aim of our study is to evaluate the feasibility, safety, and efficacy of the LVIS device in reconstructive treatment of vertebral artery dissecting aneurysms (VADAs). Methods We retrospectively reviewed the neurointerventional database of our institution from June 2014 to May 2016. ...
Performance of the ATLAS Track Reconstruction Algorithms in Dense Environments in LHC run 2
Aaboud, M.; ATLAS Collaboration; Abbott, Brad; Abdallah, Jalal; Abdinov, Ovsat; Abeloos, Baptiste; Abidi, Syed Haider; AbouZeid, Ossama; Abraham, Nicola; Abramowicz, Halina; Abreu, Henso; Abreu, Ricardo; Abulaiti, Yiming; Acharya, Bobby Samir; Adachi, Shunsuke; Adamczyk, Leszek; Adelman, Jahred; Adersberger, Michael; Adye, Tim; Affolder, Tony; Agatonovic-Jovin, Tatjana; Agheorghiesei, Catalin; Aguilar-Saavedra, Juan Antonio; Ahlen, Steven; Ahmadov, Faig; Aielli, Giulio; Akatsuka, Shunichi; Akerstedt, Henrik; Åkesson, Torsten Paul Ake; Akimov, Andrei; Alberghi, Gian Luigi; Albert, Justin; Albicocco, Pietro; Alconada Verzini, Maria Josefina; Aleksa, Martin; Aleksandrov, Igor; Alexa, Calin; Alexander, Gideon; Alexopoulos, Theodoros; Alhroob, Muhammad; Ali, Babar; Aliev, Malik; Alimonti, Gianluca; Alison, John; Alkire, Steven Patrick; Allbrooke, Benedict; Allen, Benjamin William; Allport, Phillip; Aloisio, Alberto; Alonso, Alejandro; Alonso, Francisco; Alpigiani, Cristiano; Alshehri, Azzah Aziz; Alstaty, Mahmoud; Alvarez Gonzalez, Barbara; Άlvarez Piqueras, Damián; Alviggi, Mariagrazia; Amadio, Brian Thomas; Amaral Coutinho, Yara; Amelung, Christoph; Amidei, Dante; Amor Dos Santos, Susana Patricia; Amorim, Antonio; Amoroso, Simone; Amundsen, Glenn; Anastopoulos, Christos; Ancu, Lucian Stefan; Andari, Nansi; Andeen, Timothy; Anders, Christoph Falk; Anders, John Kenneth; Anderson, Kelby; Andreazza, Attilio; Andrei, George Victor; Angelidakis, Stylianos; Angelozzi, Ivan; Angerami, Aaron; Anisenkov, Alexey; Anjos, Nuno; Annovi, Alberto; Antel, Claire; Antonelli, Mario; Antonov, Alexey; Antrim, Daniel Joseph; Anulli, Fabio; Aoki, Masato; Aperio Bella, Ludovica; Arabidze, Giorgi; Arai, Yasuo; Araque, Juan Pedro; Araujo Ferraz, Victor; Arce, Ayana; Ardell, Rose Elisabeth; Arduh, Francisco Anuar; Arguin, Jean-Francois; Argyropoulos, Spyridon; Arik, Metin; Armbruster, Aaron James; Armitage, Lewis James; Arnaez, Olivier; Arnold, Hannah; Arratia, Miguel; Arslan, Ozan; Artamonov, Andrei; Artoni, Giacomo; Artz, Sebastian; Asai, Shoji; Asbah, Nedaa; Ashkenazi, Adi; Asquith, Lily; Assamagan, Ketevi; Astalos, Robert; Atkinson, Markus; Atlay, Naim Bora; Augsten, Kamil; Avolio, Giuseppe; Axen, Bradley; Ayoub, Mohamad Kassem; Azuelos, Georges; Baas, Alessandra; Baca, Matthew John; Bachacou, Henri; Bachas, Konstantinos; Backes, Moritz; Backhaus, Malte; Bagnaia, Paolo; Bahrasemani, Sina; Baines, John; Bajic, Milena; Baker, Oliver Keith; Baldin, Evgenii; Balek, Petr; Balli, Fabrice; Balunas, William Keaton; Banas, Elzbieta; Banerjee, Swagato; Bannoura, Arwa A E; Barak, Liron; Barberio, Elisabetta Luigia; Barberis, Dario; Barbero, Marlon; Barillari, Teresa; Barisits, Martin-Stefan; Barklow, Timothy; Barlow, Nick; Barnes, Sarah Louise; Barnett, Bruce; Barnett, Michael; Barnovska-Blenessy, Zuzana; Baroncelli, Antonio; Barone, Gaetano; Barr, Alan; Barranco Navarro, Laura; Barreiro, Fernando; Barreiro Guimarães da Costa, João; Bartoldus, Rainer; Barton, Adam Edward; Bartos, Pavol; Basalaev, Artem; Bassalat, Ahmed; Bates, Richard; Batista, Santiago Juan; Batley, Richard; Battaglia, Marco; Bauce, Matteo; Bauer, Florian; Bawa, Harinder Singh; Beacham, James; Beattie, Michael David; Beau, Tristan; Beauchemin, Pierre-Hugues; Bechtle, Philip; Beck, Hans~Peter; Becker, Kathrin; Becker, Maurice; Beckingham, Matthew; Becot, Cyril; Beddall, Andrew; Beddall, Ayda; Bednyakov, Vadim; Bedognetti, Matteo; Bee, Christopher; Beermann, Thomas; Begalli, Marcia; Begel, Michael; Behr, Janna Katharina; Bell, Andrew Stuart; Bella, Gideon; Bellagamba, Lorenzo; Bellerive, Alain; Bellomo, Massimiliano; Belotskiy, Konstantin; Beltramello, Olga; Belyaev, Nikita; Benary, Odette; Benchekroun, Driss; Bender, Michael; Bendtz, Katarina; Benekos, Nektarios; Benhammou, Yan; Benhar Noccioli, Eleonora; Benitez, Jose; Benjamin, Douglas; Benoit, Mathieu; Bensinger, James; Bentvelsen, Stan; Beresford, Lydia; Beretta, Matteo; Berge, David; Bergeaas Kuutmann, Elin; Berger, Nicolas; Beringer, Jürg; Berlendis, Simon; Bernard, Nathan Rogers; Bernardi, Gregorio; Bernius, Catrin; Bernlochner, Florian Urs; Berry, Tracey; Berta, Peter; Bertella, Claudia; Bertoli, Gabriele; Bertolucci, Federico; Bertram, Iain Alexander; Bertsche, Carolyn; Bertsche, David; Besjes, Geert-Jan; Bessidskaia Bylund, Olga; Bessner, Martin Florian; Besson, Nathalie; Betancourt, Christopher; Bethani, Agni; Bethke, Siegfried; Bevan, Adrian John; Beyer, Julien-christopher; Bianchi, Riccardo-Maria; Biebel, Otmar; Biedermann, Dustin; Bielski, Rafal; Biesuz, Nicolo Vladi; Biglietti, Michela; Bilbao De Mendizabal, Javier; Billoud, Thomas Remy Victor; Bilokon, Halina; Bindi, Marcello; Bingul, Ahmet; Bini, Cesare; Biondi, Silvia; Bisanz, Tobias; Bittrich, Carsten; Bjergaard, David Martin; Black, Curtis; Black, James; Black, Kevin; Blair, Robert; Blazek, Tomas; Bloch, Ingo; Blocker, Craig; Blue, Andrew; Blum, Walter; Blumenschein, Ulrike; Blunier, Sylvain; Bobbink, Gerjan; Bobrovnikov, Victor; Bocchetta, Simona Serena; Bocci, Andrea; Bock, Christopher; Boehler, Michael; Boerner, Daniela; Bogavac, Danijela; Bogdanchikov, Alexander; Bohm, Christian; Boisvert, Veronique; Bokan, Petar; Bold, Tomasz; Boldyrev, Alexey; Bolz, Arthur Eugen; Bomben, Marco; Bona, Marcella; Boonekamp, Maarten; Borisov, Anatoly; Borissov, Guennadi; Bortfeldt, Jonathan; Bortoletto, Daniela; Bortolotto, Valerio; Boscherini, Davide; Bosman, Martine; Bossio Sola, Jonathan David; Boudreau, Joseph; Bouffard, Julian; Bouhova-Thacker, Evelina Vassileva; Boumediene, Djamel Eddine; Bourdarios, Claire; Boutle, Sarah Kate; Boveia, Antonio; Boyd, James; Boyko, Igor; Bracinik, Juraj; Brandt, Andrew; Brandt, Gerhard; Brandt, Oleg; Bratzler, Uwe; Brau, Benjamin; Brau, James; Breaden Madden, William Dmitri; Brendlinger, Kurt; Brennan, Amelia Jean; Brenner, Lydia; Brenner, Richard; Bressler, Shikma; Briglin, Daniel Lawrence; Bristow, Timothy Michael; Britton, Dave; Britzger, Daniel; Brochu, Frederic; Brock, Ian; Brock, Raymond; Brooijmans, Gustaaf; Brooks, Timothy; Brooks, William; Brosamer, Jacquelyn; Brost, Elizabeth; Broughton, James; Bruckman de Renstrom, Pawel; Bruncko, Dusan; Bruni, Alessia; Bruni, Graziano; Bruni, Lucrezia Stella; Brunt, Benjamin; Bruschi, Marco; Bruscino, Nello; Bryant, Patrick; Bryngemark, Lene; Buanes, Trygve; Buat, Quentin; Buchholz, Peter; Buckley, Andrew; Budagov, Ioulian; Buehrer, Felix; Bugge, Magnar Kopangen; Bulekov, Oleg; Bullock, Daniel; Burch, Tyler James; Burckhart, Helfried; Burdin, Sergey; Burgard, Carsten Daniel; Burger, Angela Maria; Burghgrave, Blake; Burka, Klaudia; Burke, Stephen; Burmeister, Ingo; Burr, Jonathan Thomas Peter; Busato, Emmanuel; Büscher, Daniel; Büscher, Volker; Bussey, Peter; Butler, John; Buttar, Craig; Butterworth, Jonathan; Butti, Pierfrancesco; Buttinger, William; Buzatu, Adrian; Buzykaev, Aleksey; Cabrera Urbán, Susana; Caforio, Davide; Cairo, Valentina; Cakir, Orhan; Calace, Noemi; Calafiura, Paolo; Calandri, Alessandro; Calderini, Giovanni; Calfayan, Philippe; Callea, Giuseppe; Caloba, Luiz; Calvente Lopez, Sergio; Calvet, David; Calvet, Samuel; Calvet, Thomas Philippe; Camacho Toro, Reina; Camarda, Stefano; Camarri, Paolo; Cameron, David; Caminal Armadans, Roger; Camincher, Clement; Campana, Simone; Campanelli, Mario; Camplani, Alessandra; Campoverde, Angel; Canale, Vincenzo; Cano Bret, Marc; Cantero, Josu; Cao, Tingting; Capeans Garrido, Maria Del Mar; Caprini, Irinel; Caprini, Mihai; Capua, Marcella; Carbone, Ryne Michael; Cardarelli, Roberto; Cardillo, Fabio; Carli, Ina; Carli, Tancredi; Carlino, Gianpaolo; Carlson, Benjamin Taylor; Carminati, Leonardo; Carney, Rebecca; Caron, Sascha; Carquin, Edson; Carrá, Sonia; Carrillo-Montoya, German D; Carvalho, João; Casadei, Diego; Casado, Maria Pilar; Casolino, Mirkoantonio; Casper, David William; Castelijn, Remco; Castillo Gimenez, Victoria; Castro, Nuno Filipe; Catinaccio, Andrea; Catmore, James; Cattai, Ariella; Caudron, Julien; Cavaliere, Viviana; Cavallaro, Emanuele; Cavalli, Donatella; Cavalli-Sforza, Matteo; Cavasinni, Vincenzo; Celebi, Emre; Ceradini, Filippo; Cerda Alberich, Leonor; Santiago Cerqueira, Augusto; Cerri, Alessandro; Cerrito, Lucio; Cerutti, Fabio; Cervelli, Alberto; Cetin, Serkant Ali; Chafaq, Aziz; Chakraborty, Dhiman; Chan, Stephen Kam-wah; Chan, Wing Sheung; Chan, Yat Long; Chang, Philip; Chapman, John Derek; Charlton, Dave; Chau, Chav Chhiv; Chavez Barajas, Carlos Alberto; Che, Siinn; Cheatham, Susan; Chegwidden, Andrew; Chekanov, Sergei; Chekulaev, Sergey; Chelkov, Gueorgui; Chelstowska, Magda Anna; Chen, Chunhui; Chen, Hucheng; Chen, Shenjian; Chen, Shion; Chen, Xin; Chen, Ye; Cheng, Hok Chuen; Cheng, Huajie; Cheplakov, Alexander; Cheremushkina, Evgenia; Cherkaoui El Moursli, Rajaa; Chernyatin, Valeriy; Cheu, Elliott; Chevalier, Laurent; Chiarella, Vitaliano; Chiarelli, Giorgio; Chiodini, Gabriele; Chisholm, Andrew; Chitan, Adrian; Chiu, Yu Him Justin; Chizhov, Mihail; Choi, Kyungeon; Chomont, Arthur Rene; Chouridou, Sofia; Christodoulou, Valentinos; Chromek-Burckhart, Doris; Chu, Ming Chung; Chudoba, Jiri; Chuinard, Annabelle Julia; Chwastowski, Janusz; Chytka, Ladislav; Ciftci, Abbas Kenan; Cinca, Diane; Cindro, Vladimir; Cioara, Irina Antonela; Ciocca, Claudia; Ciocio, Alessandra; Cirotto, Francesco; Citron, Zvi Hirsh; Citterio, Mauro; Ciubancan, Mihai; Clark, Allan G; Clark, Brian Lee; Clark, Michael; Clark, Philip James; Clarke, Robert; Clement, Christophe; Coadou, Yann; Cobal, Marina; Coccaro, Andrea; Cochran, James H; Colasurdo, Luca; Cole, Brian; Colijn, Auke-Pieter; Collot, Johann; Colombo, Tommaso; Conde Muiño, Patricia; Coniavitis, Elias; Connell, Simon Henry; Connelly, Ian; Constantinescu, Serban; Conti, Geraldine; Conventi, Francesco; Cooke, Mark; Cooper-Sarkar, Amanda; Cormier, Felix; Cormier, Kyle James Read; Corradi, Massimo; Corriveau, Francois; Cortes-Gonzalez, Arely; Cortiana, Giorgio; Costa, Giuseppe; Costa, María José; Costanzo, Davide; Cottin, Giovanna; Cowan, Glen; Cox, Brian; Cranmer, Kyle; Crawley, Samuel Joseph; Creager, Rachael; Cree, Graham; Crépé-Renaudin, Sabine; Crescioli, Francesco; Cribbs, Wayne Allen; Cristinziani, Markus; Croft, Vince; Crosetti, Giovanni; Cueto, Ana; Cuhadar Donszelmann, Tulay; Cukierman, Aviv Ruben; Cummings, Jane; Curatolo, Maria; Cúth, Jakub; Czirr, Hendrik; Czodrowski, Patrick; D'amen, Gabriele; D'Auria, Saverio; D'eramo, Louis; D'Onofrio, Monica; Da Cunha Sargedas De Sousa, Mario Jose; Da Via, Cinzia; Dabrowski, Wladyslaw; Dado, Tomas; Dai, Tiesheng; Dale, Orjan; Dallaire, Frederick; Dallapiccola, Carlo; Dam, Mogens; Dandoy, Jeffrey; Daneri, Maria Florencia; Dang, Nguyen Phuong; Daniells, Andrew Christopher; Dann, Nicholas Stuart; Danninger, Matthias; Dano Hoffmann, Maria; Dao, Valerio; Darbo, Giovanni; Darmora, Smita; Dassoulas, James; Dattagupta, Aparajita; Daubney, Thomas; Davey, Will; David, Claire; Davidek, Tomas; Davies, Merlin; Davis, Douglas; Davison, Peter; Dawe, Edmund; Dawson, Ian; De, Kaushik; de Asmundis, Riccardo; De Benedetti, Abraham; De Castro, Stefano; De Cecco, Sandro; De Groot, Nicolo; de Jong, Paul; De la Torre, Hector; De Lorenzi, Francesco; De Maria, Antonio; De Pedis, Daniele; De Salvo, Alessandro; De Sanctis, Umberto; De Santo, Antonella; De Vasconcelos Corga, Kevin; De Vivie De Regie, Jean-Baptiste; Dearnaley, William James; Debbe, Ramiro; Debenedetti, Chiara; Dedovich, Dmitri; Dehghanian, Nooshin; Deigaard, Ingrid; Del Gaudio, Michela; Del Peso, Jose; Del Prete, Tarcisio; Delgove, David; Deliot, Frederic; Delitzsch, Chris Malena; Dell'Acqua, Andrea; Dell'Asta, Lidia; Dell'Orso, Mauro; Della Pietra, Massimo; della Volpe, Domenico; Delmastro, Marco; Delporte, Charles; Delsart, Pierre-Antoine; DeMarco, David; Demers, Sarah; Demichev, Mikhail; Demilly, Aurelien; Denisov, Sergey; Denysiuk, Denys; Derendarz, Dominik; Derkaoui, Jamal Eddine; Derue, Frederic; Dervan, Paul; Desch, Klaus Kurt; Deterre, Cecile; Dette, Karola; Devesa, Maria Roberta; Deviveiros, Pier-Olivier; Dewhurst, Alastair; Dhaliwal, Saminder; Di Bello, Francesco Armando; Di Ciaccio, Anna; Di Ciaccio, Lucia; Di Clemente, William Kennedy; Di Donato, Camilla; Di Girolamo, Alessandro; Di Girolamo, Beniamino; Di Micco, Biagio; Di Nardo, Roberto; Di Petrillo, Karri Folan; Di Simone, Andrea; Di Sipio, Riccardo; Di Valentino, David; Diaconu, Cristinel; Diamond, Miriam; Dias, Flavia; Diaz, Marco Aurelio; Diehl, Edward; Dietrich, Janet; Díez Cornell, Sergio; Dimitrievska, Aleksandra; Dingfelder, Jochen; Dita, Petre; Dita, Sanda; Dittus, Fridolin; Djama, Fares; Djobava, Tamar; Djuvsland, Julia Isabell; Barros do Vale, Maria Aline; Dobos, Daniel; Dobre, Monica; Doglioni, Caterina; Dolejsi, Jiri; Dolezal, Zdenek; Donadelli, Marisilvia; Donati, Simone; Dondero, Paolo; Donini, Julien; Dopke, Jens; Doria, Alessandra; Dova, Maria-Teresa; Doyle, Tony; Drechsler, Eric; Dris, Manolis; Du, Yanyan; Duarte-Campderros, Jorge; Dubreuil, Arnaud; Duchovni, Ehud; Duckeck, Guenter; Ducourthial, Audrey; Ducu, Otilia Anamaria; Duda, Dominik; Dudarev, Alexey; Dudder, Andreas Christian; Duffield, Emily Marie; Duflot, Laurent; Dührssen, Michael; Dumancic, Mirta; Dumitriu, Ana Elena; Duncan, Anna Kathryn; Dunford, Monica; Duran Yildiz, Hatice; Düren, Michael; Durglishvili, Archil; Duschinger, Dirk; Dutta, Baishali; Dyndal, Mateusz; Eckardt, Christoph; Ecker, Katharina Maria; Edgar, Ryan Christopher; Eifert, Till; Eigen, Gerald; Einsweiler, Kevin; Ekelof, Tord; El Kacimi, Mohamed; El Kosseifi, Rima; Ellajosyula, Venugopal; Ellert, Mattias; Elles, Sabine; Ellinghaus, Frank; Elliot, Alison; Ellis, Nicolas; Elmsheuser, Johannes; Elsing, Markus; Emeliyanov, Dmitry; Enari, Yuji; Endner, Oliver Chris; Ennis, Joseph Stanford; Erdmann, Johannes; Ereditato, Antonio; Ernis, Gunar; Ernst, Michael; Errede, Steven; Escalier, Marc; Escobar, Carlos; Esposito, Bellisario; Estrada Pastor, Oscar; Etienvre, Anne-Isabelle; Etzion, Erez; Evans, Hal; Ezhilov, Alexey; Ezzi, Mohammed; Fabbri, Federica; Fabbri, Laura; Facini, Gabriel; Fakhrutdinov, Rinat; Falciano, Speranza; Falla, Rebecca Jane; Faltova, Jana; Fang, Yaquan; Fanti, Marcello; Farbin, Amir; Farilla, Addolorata; Farina, Christian; Farina, Edoardo Maria; Farooque, Trisha; Farrell, Steven; Farrington, Sinead; Farthouat, Philippe; Fassi, Farida; Fassnacht, Patrick; Fassouliotis, Dimitrios; Faucci Giannelli, Michele; Favareto, Andrea; Fawcett, William James; Fayard, Louis; Fedin, Oleg; Fedorko, Wojciech; Feigl, Simon; Feligioni, Lorenzo; Feng, Cunfeng; Feng, Eric; Feng, Haolu; Fenton, Michael James; Fenyuk, Alexander; Feremenga, Last; Fernandez Martinez, Patricia; Fernandez Perez, Sonia; Ferrando, James; Ferrari, Arnaud; Ferrari, Pamela; Ferrari, Roberto; Ferreira de Lima, Danilo Enoque; Ferrer, Antonio; Ferrere, Didier; Ferretti, Claudio; Fiedler, Frank; Filipčič, Andrej; Filipuzzi, Marco; Filthaut, Frank; Fincke-Keeler, Margret; Finelli, Kevin Daniel; Fiolhais, Miguel; Fiorini, Luca; Fischer, Adam; Fischer, Cora; Fischer, Julia; Fisher, Wade Cameron; Flaschel, Nils; Fleck, Ivor; Fleischmann, Philipp; Fletcher, Rob Roy MacGregor; Flick, Tobias; Flierl, Bernhard Matthias; Flores Castillo, Luis; Flowerdew, Michael; Forcolin, Giulio Tiziano; Formica, Andrea; Förster, Fabian Alexander; Forti, Alessandra; Foster, Andrew Geoffrey; Fournier, Daniel; Fox, Harald; Fracchia, Silvia; Francavilla, Paolo; Franchini, Matteo; Franchino, Silvia; Francis, David; Franconi, Laura; Franklin, Melissa; Frate, Meghan; Fraternali, Marco; Freeborn, David; Fressard-Batraneanu, Silvia; Freund, Benjamin; Froidevaux, Daniel; Frost, James; Fukunaga, Chikara; Fusayasu, Takahiro; Fuster, Juan; Gabaldon, Carolina; Gabizon, Ofir; Gabrielli, Alessandro; Gabrielli, Andrea; Gach, Grzegorz; Gadatsch, Stefan; Gadomski, Szymon; Gagliardi, Guido; Gagnon, Louis Guillaume; Galea, Cristina; Galhardo, Bruno; Gallas, Elizabeth; Gallop, Bruce; Gallus, Petr; Galster, Gorm Aske Gram Krohn; Gan, KK; Ganguly, Sanmay; Gao, Yanyan; Gao, Yongsheng; Garay Walls, Francisca; García, Carmen; García Navarro, José Enrique; Garcia-Sciveres, Maurice; Gardner, Robert; Garelli, Nicoletta; Garonne, Vincent; Gascon Bravo, Alberto; Gasnikova, Ksenia; Gatti, Claudio; Gaudiello, Andrea; Gaudio, Gabriella; Gavrilenko, Igor; Gay, Colin; Gaycken, Goetz; Gazis, Evangelos; Gee, Norman; Geisen, Jannik; Geisen, Marc; Geisler, Manuel Patrice; Gellerstedt, Karl; Gemme, Claudia; Genest, Marie-Hélène; Geng, Cong; Gentile, Simonetta; Gentsos, Christos; George, Simon; Gerbaudo, Davide; Gershon, Avi; Geß{}ner, Gregor; Ghasemi, Sara; Ghneimat, Mazuza; Giacobbe, Benedetto; Giagu, Stefano; Giannetti, Paola; Gibson, Stephen; Gignac, Matthew; Gilchriese, Murdock; Gillberg, Dag; Gilles, Geoffrey; Gingrich, Douglas; Giokaris, Nikos; Giordani, MarioPaolo; Giorgi, Filippo Maria; Giraud, Pierre-Francois; Giromini, Paolo; Giugni, Danilo; Giuli, Francesco; Giuliani, Claudia; Giulini, Maddalena; Gjelsten, Børge Kile; Gkaitatzis, Stamatios; Gkialas, Ioannis; Gkougkousis, Evangelos Leonidas; Gkountoumis, Panagiotis; Gladilin, Leonid; Glasman, Claudia; Glatzer, Julian; Glaysher, Paul; Glazov, Alexandre; Goblirsch-Kolb, Maximilian; Godlewski, Jan; Goldfarb, Steven; Golling, Tobias; Golubkov, Dmitry; Gomes, Agostinho; Gonçalo, Ricardo; Goncalves Gama, Rafael; Goncalves Pinto Firmino Da Costa, Joao; Gonella, Giulia; Gonella, Laura; Gongadze, Alexi; González de la Hoz, Santiago; Gonzalez-Sevilla, Sergio; Goossens, Luc; Gorbounov, Petr Andreevich; Gordon, Howard; Gorelov, Igor; Gorini, Benedetto; Gorini, Edoardo; Gorišek, Andrej; Goshaw, Alfred; Gössling, Claus; Gostkin, Mikhail Ivanovitch; Gottardo, Carlo Alberto; Goudet, Christophe Raymond; Goujdami, Driss; Goussiou, Anna; Govender, Nicolin; Gozani, Eitan; Graber, Lars; Grabowska-Bold, Iwona; Gradin, Per Olov Joakim; Gramling, Johanna; Gramstad, Eirik; Grancagnolo, Sergio; Gratchev, Vadim; Gravila, Paul Mircea; Gray, Chloe; Gray, Heather; Greenwood, Zeno Dixon; Grefe, Christian; Gregersen, Kristian; Gregor, Ingrid-Maria; Grenier, Philippe; Grevtsov, Kirill; Griffiths, Justin; Grillo, Alexander; Grimm, Kathryn; Grinstein, Sebastian; Gris, Philippe Luc Yves; Grivaz, Jean-Francois; Groh, Sabrina; Gross, Eilam; Grosse-Knetter, Joern; Grossi, Giulio Cornelio; Grout, Zara Jane; Grummer, Aidan; Guan, Liang; Guan, Wen; Guenther, Jaroslav; Guescini, Francesco; Guest, Daniel; Gueta, Orel; Gui, Bin; Guido, Elisa; Guillemin, Thibault; Guindon, Stefan; Gul, Umar; Gumpert, Christian; Guo, Jun; Guo, Wen; Guo, Yicheng; Gupta, Ruchi; Gupta, Shaun; Gustavino, Giuliano; Gutierrez, Phillip; Gutierrez Ortiz, Nicolas Gilberto; Gutschow, Christian; Guyot, Claude; Guzik, Marcin Pawel; Gwenlan, Claire; Gwilliam, Carl; Haas, Andy; Haber, Carl; Hadavand, Haleh Khani; Haddad, Nacim; Hadef, Asma; Hageböck, Stephan; Hagihara, Mutsuto; Hakobyan, Hrachya; Haleem, Mahsana; Haley, Joseph; Halladjian, Garabed; Hallewell, Gregory David; Hamacher, Klaus; Hamal, Petr; Hamano, Kenji; Hamilton, Andrew; Hamity, Guillermo Nicolas; Hamnett, Phillip George; Han, Liang; Han, Shuo; Hanagaki, Kazunori; Hanawa, Keita; Hance, Michael; Haney, Bijan; Hanke, Paul; Hansen, Jørgen Beck; Hansen, Jorn Dines; Hansen, Maike Christina; Hansen, Peter Henrik; Hara, Kazuhiko; Hard, Andrew; Harenberg, Torsten; Hariri, Faten; Harkusha, Siarhei; Harrington, Robert; Harrison, Paul Fraser; Hartmann, Nikolai Marcel; Hasegawa, Makoto; Hasegawa, Yoji; Hasib, Ahmed; Hassani, Samira; Haug, Sigve; Hauser, Reiner; Hauswald, Lorenz; Havener, Laura Brittany; Havranek, Miroslav; Hawkes, Christopher; Hawkings, Richard John; Hayakawa, Daiki; Hayden, Daniel; Hays, Chris; Hays, Jonathan Michael; Hayward, Helen; Haywood, Stephen; Head, Simon; Heck, Tobias; Hedberg, Vincent; Heelan, Louise; Heidegger, Kim Katrin; Heim, Sarah; Heim, Timon; Heinemann, Beate; Heinrich, Jochen Jens; Heinrich, Lukas; Heinz, Christian; Hejbal, Jiri; Helary, Louis; Held, Alexander; Hellman, Sten; Helsens, Clement; Henderson, Robert; Heng, Yang; Henkelmann, Steffen; Henriques Correia, Ana Maria; Henrot-Versille, Sophie; Herbert, Geoffrey Henry; Herde, Hannah; Herget, Verena; Hernández Jiménez, Yesenia; Herr, Holger; Herten, Gregor; Hertenberger, Ralf; Hervas, Luis; Herwig, Theodor Christian; Hesketh, Gavin Grant; Hessey, Nigel; Hetherly, Jeffrey Wayne; Higashino, Satoshi; Higón-Rodriguez, Emilio; Hill, Ewan; Hill, John; Hiller, Karl Heinz; Hillier, Stephen; Hils, Maximilian; Hinchliffe, Ian; Hirose, Minoru; Hirschbuehl, Dominic; Hiti, Bojan; Hladik, Ondrej; Hoad, Xanthe; Hobbs, John; Hod, Noam; Hodgkinson, Mark; Hodgson, Paul; Hoecker, Andreas; Hoeferkamp, Martin; Hoenig, Friedrich; Hohn, David; Holmes, Tova Ray; Homann, Michael; Honda, Shunsuke; Honda, Takuya; Hong, Tae Min; Hooberman, Benjamin Henry; Hopkins, Walter; Horii, Yasuyuki; Horton, Arthur James; Hostachy, Jean-Yves; Hou, Suen; Hoummada, Abdeslam; Howarth, James; Hoya, Joaquin; Hrabovsky, Miroslav; Hrdinka, Julia; Hristova, Ivana; Hrivnac, Julius; Hryn'ova, Tetiana; Hrynevich, Aliaksei; Hsu, Pai-hsien Jennifer; Hsu, Shih-Chieh; Hu, Qipeng; Hu, Shuyang; Huang, Yanping; Hubacek, Zdenek; Hubaut, Fabrice; Huegging, Fabian; Huffman, Todd Brian; Hughes, Emlyn; Hughes, Gareth; Huhtinen, Mika; Huo, Peng; Huseynov, Nazim; Huston, Joey; Huth, John; Iacobucci, Giuseppe; Iakovidis, Georgios; Ibragimov, Iskander; Iconomidou-Fayard, Lydia; Idrissi, Zineb; Iengo, Paolo; Igonkina, Olga; Iizawa, Tomoya; Ikegami, Yoichi; Ikeno, Masahiro; Ilchenko, Yuriy; Iliadis, Dimitrios; Ilic, Nikolina; Introzzi, Gianluca; Ioannou, Pavlos; Iodice, Mauro; Iordanidou, Kalliopi; Ippolito, Valerio; Isacson, Max Fredrik; Ishijima, Naoki; Ishino, Masaya; Ishitsuka, Masaki; Issever, Cigdem; Istin, Serhat; Ito, Fumiaki; Iturbe Ponce, Julia Mariana; Iuppa, Roberto; Iwasaki, Hiroyuki; Izen, Joseph; Izzo, Vincenzo; Jabbar, Samina; Jackson, Paul; Jacobs, Ruth Magdalena; Jain, Vivek; Jakobi, Katharina Bianca; Jakobs, Karl; Jakobsen, Sune; Jakoubek, Tomas; Jamin, David Olivier; Jana, Dilip; Jansky, Roland; Janssen, Jens; Janus, Michel; Janus, Piotr Andrzej; Jarlskog, Göran; Javadov, Namig; Javůrek, Tomáš; Javurkova, Martina; Jeanneau, Fabien; Jeanty, Laura; Jejelava, Juansher; Jelinskas, Adomas; Jenni, Peter; Jeske, Carl; Jézéquel, Stéphane; Ji, Haoshuang; Jia, Jiangyong; Jiang, Hai; Jiang, Yi; Jiang, Zihao; Jiggins, Stephen; Jimenez Pena, Javier; Jin, Shan; Jinaru, Adam; Jinnouchi, Osamu; Jivan, Harshna; Johansson, Per; Johns, Kenneth; Johnson, Christian; Johnson, William Joseph; Jon-And, Kerstin; Jones, Roger; Jones, Samuel David; Jones, Sarah; Jones, Tim; Jongmanns, Jan; Jorge, Pedro; Jovicevic, Jelena; Ju, Xiangyang; Juste Rozas, Aurelio; Köhler, Markus Konrad; Kaczmarska, Anna; Kado, Marumi; Kagan, Harris; Kagan, Michael; Kahn, Sebastien Jonathan; Kaji, Toshiaki; Kajomovitz, Enrique; Kalderon, Charles William; Kaluza, Adam; Kama, Sami; Kamenshchikov, Andrey; Kanaya, Naoko; Kanjir, Luka; Kantserov, Vadim; Kanzaki, Junichi; Kaplan, Benjamin; Kaplan, Laser Seymour; Kar, Deepak; Karakostas, Konstantinos; Karastathis, Nikolaos; Kareem, Mohammad Jawad; Karentzos, Efstathios; Karpov, Sergey; Karpova, Zoya; Karthik, Krishnaiyengar; Kartvelishvili, Vakhtang; Karyukhin, Andrey; Kasahara, Kota; Kashif, Lashkar; Kass, Richard; Kastanas, Alex; Kataoka, Yousuke; Kato, Chikuma; Katre, Akshay; Katzy, Judith; Kawade, Kentaro; Kawagoe, Kiyotomo; Kawamoto, Tatsuo; Kawamura, Gen; Kay, Ellis; Kazanin, Vassili; Keeler, Richard; Kehoe, Robert; Keller, John; Kempster, Jacob Julian; Kendrick, James; Keoshkerian, Houry; Kepka, Oldrich; Kerševan, Borut Paul; Kersten, Susanne; Keyes, Robert; Khader, Mazin; Khalil-zada, Farkhad; Khanov, Alexander; Kharlamov, Alexey; Kharlamova, Tatyana; Khodinov, Alexander; Khoo, Teng Jian; Khovanskiy, Valery; Khramov, Evgeniy; Khubua, Jemal; Kido, Shogo; Kilby, Callum; Kim, Hee Yeun; Kim, Shinhong; Kim, Young-Kee; Kimura, Naoki; Kind, Oliver Maria; King, Barry; Kirchmeier, David; Kirk, Julie; Kiryunin, Andrey; Kishimoto, Tomoe; Kisielewska, Danuta; Kiuchi, Kenji; Kivernyk, Oleh; Kladiva, Eduard; Klapdor-Kleingrothaus, Thorwald; Klein, Matthew Henry; Klein, Max; Klein, Uta; Kleinknecht, Konrad; Klimek, Pawel; Klimentov, Alexei; Klingenberg, Reiner; Klingl, Tobias; Klioutchnikova, Tatiana; Kluge, Eike-Erik; Kluit, Peter; Kluth, Stefan; Kneringer, Emmerich; Knoops, Edith; Knue, Andrea; Kobayashi, Aine; Kobayashi, Dai; Kobayashi, Tomio; Kobel, Michael; Kocian, Martin; Kodys, Peter; Koffas, Thomas; Koffeman, Els; Köhler, Nicolas Maximilian; Koi, Tatsumi; Kolb, Mathis; Koletsou, Iro; Komar, Aston; Komori, Yuto; Kondo, Takahiko; Kondrashova, Nataliia; Köneke, Karsten; König, Adriaan; Kono, Takanori; Konoplich, Rostislav; Konstantinidis, Nikolaos; Kopeliansky, Revital; Koperny, Stefan; Kopp, Anna Katharina; Korcyl, Krzysztof; Kordas, Kostantinos; Korn, Andreas; Korol, Aleksandr; Korolkov, Ilya; Korolkova, Elena; Kortner, Oliver; Kortner, Sandra; Kosek, Tomas; Kostyukhin, Vadim; Kotwal, Ashutosh; Koulouris, Aimilianos; Kourkoumeli-Charalampidi, Athina; Kourkoumelis, Christine; Kourlitis, Evangelos; Kouskoura, Vasiliki; Kowalewska, Anna Bozena; Kowalewski, Robert Victor; Kowalski, Tadeusz; Kozakai, Chihiro; Kozanecki, Witold; Kozhin, Anatoly; Kramarenko, Viktor; Kramberger, Gregor; Krasnopevtsev, Dimitrii; Krasny, Mieczyslaw Witold; Krasznahorkay, Attila; Krauss, Dominik; Kremer, Jakub Andrzej; Kretzschmar, Jan; Kreutzfeldt, Kristof; Krieger, Peter; Krizka, Karol; Kroeninger, Kevin; Kroha, Hubert; Kroll, Jiri; Kroll, Joe; Kroseberg, Juergen; Krstic, Jelena; Kruchonak, Uladzimir; Krüger, Hans; Krumnack, Nils; Kruse, Mark; Kubota, Takashi; Kucuk, Hilal; Kuday, Sinan; Kuechler, Jan Thomas; Kuehn, Susanne; Kugel, Andreas; Kuger, Fabian; Kuhl, Thorsten; Kukhtin, Victor; Kukla, Romain; Kulchitsky, Yuri; Kuleshov, Sergey; Kulinich, Yakov Petrovich; Kuna, Marine; Kunigo, Takuto; Kupco, Alexander; Kupfer, Tobias; Kuprash, Oleg; Kurashige, Hisaya; Kurchaninov, Leonid; Kurochkin, Yurii; Kurth, Matthew Glenn; Kus, Vlastimil; Kuwertz, Emma Sian; Kuze, Masahiro; Kvita, Jiri; Kwan, Tony; Kyriazopoulos, Dimitrios; La Rosa, Alessandro; La Rosa Navarro, Jose Luis; La Rotonda, Laura; Lacasta, Carlos; Lacava, Francesco; Lacey, James; Lacker, Heiko; Lacour, Didier; Ladygin, Evgueni; Lafaye, Remi; Laforge, Bertrand; Lagouri, Theodota; Lai, Stanley; Lammers, Sabine; Lampl, Walter; Lançon, Eric; Landgraf, Ulrich; Landon, Murrough; Lanfermann, Marie Christine; Lang, Valerie Susanne; Lange, J örn Christian; Langenberg, Robert Johannes; Lankford, Andrew; Lanni, Francesco; Lantzsch, Kerstin; Lanza, Agostino; Lapertosa, Alessandro; Laplace, Sandrine; Laporte, Jean-Francois; Lari, Tommaso; Lasagni Manghi, Federico; Lassnig, Mario; Laurelli, Paolo; Lavrijsen, Wim; Law, Alexander; Laycock, Paul; Lazovich, Tomo; Lazzaroni, Massimo; Le, Brian; Le Dortz, Olivier; Le Guirriec, Emmanuel; Le Quilleuc, Eloi; LeBlanc, Matthew Edgar; LeCompte, Thomas; Ledroit-Guillon, Fabienne; Lee, Claire Alexandra; Lee, Graham Richard; Lee, Shih-Chang; Lee, Lawrence; Lefebvre, Benoit; Lefebvre, Guillaume; Lefebvre, Michel; Legger, Federica; Leggett, Charles; Lehan, Allan; Lehmann Miotto, Giovanna; Lei, Xiaowen; Leight, William Axel; Leite, Marco Aurelio Lisboa; Leitner, Rupert; Lellouch, Daniel; Lemmer, Boris; Leney, Katharine; Lenz, Tatjana; Lenzi, Bruno; Leone, Robert; Leone, Sandra; Leonidopoulos, Christos; Lerner, Giuseppe; Leroy, Claude; Lesage, Arthur; Lester, Christopher; Levchenko, Mikhail; Levêque, Jessica; Levin, Daniel; Levinson, Lorne; Levy, Mark; Lewis, Dave; Li, Bing; Li, Changqiao; Li, Haifeng; Li, Liang; Li, Qi; Li, Shu; Li, Xingguo; Li, Yichen; Liang, Zhijun; Liberti, Barbara; Liblong, Aaron; Lie, Ki; Liebal, Jessica; Liebig, Wolfgang; Limosani, Antonio; Lin, Simon; Lin, Tai-Hua; Lindquist, Brian Edward; Lionti, Anthony Eric; Lipeles, Elliot; Lipniacka, Anna; Lisovyi, Mykhailo; Liss, Tony; Lister, Alison; Litke, Alan; Liu, Bo; Liu, Hao; Liu, Hongbin; Liu, Jesse Kar Kee; Liu, Jian; Liu, Jianbei; Liu, Kun; Liu, Lulu; Liu, Minghui; Liu, Yanlin; Liu, Yanwen; Livan, Michele; Lleres, Annick; Llorente Merino, Javier; Lloyd, Stephen; Lo, Cheuk Yee; Lo Sterzo, Francesco; Lobodzinska, Ewelina Maria; Loch, Peter; Loebinger, Fred; Loesle, Alena; Loew, Kevin Michael; Loginov, Andrey; Lohse, Thomas; Lohwasser, Kristin; Lokajicek, Milos; Long, Brian Alexander; Long, Jonathan David; Long, Robin Eamonn; Longo, Luigi; Looper, Kristina Anne; Lopez, Jorge; Lopez Mateos, David; Lopez Paz, Ivan; Lopez Solis, Alvaro; Lorenz, Jeanette; Lorenzo Martinez, Narei; Losada, Marta; Lösel, Philipp Jonathan; Lou, XinChou; Lounis, Abdenour; Love, Jeremy; Love, Peter; Lu, Haonan; Lu, Nan; Lu, Yun-Ju; Lubatti, Henry; Luci, Claudio; Lucotte, Arnaud; Luedtke, Christian; Luehring, Frederick; Lukas, Wolfgang; Luminari, Lamberto; Lundberg, Olof; Lund-Jensen, Bengt; Luzi, Pierre Marc; Lynn, David; Lysak, Roman; Lytken, Else; Lyubushkin, Vladimir; Ma, Hong; Ma, Lian Liang; Ma, Yanhui; Maccarrone, Giovanni; Macchiolo, Anna; Macdonald, Calum Michael; Maček, Boštjan; Machado Miguens, Joana; Madaffari, Daniele; Madar, Romain; Mader, Wolfgang; Madsen, Alexander; Maeda, Junpei; Maeland, Steffen; Maeno, Tadashi; Maevskiy, Artem; Magradze, Erekle; Mahlstedt, Joern; Maiani, Camilla; Maidantchik, Carmen; Maier, Andreas Alexander; Maier, Thomas; Maio, Amélia; Majersky, Oliver; Majewski, Stephanie; Makida, Yasuhiro; Makovec, Nikola; Malaescu, Bogdan; Malecki, Pawel; Maleev, Victor; Malek, Fairouz; Mallik, Usha; Malon, David; Malone, Claire; Maltezos, Stavros; Malyukov, Sergei; Mamuzic, Judita; Mancini, Giada; Mandelli, Luciano; Mandić, Igor; Maneira, José; Manhaes de Andrade Filho, Luciano; Manjarres Ramos, Joany; Mann, Alexander; Manousos, Athanasios; Mansoulie, Bruno; Mansour, Jason Dhia; Mantifel, Rodger; Mantoani, Matteo; Manzoni, Stefano; Mapelli, Livio; Marceca, Gino; March, Luis; Marchese, Luigi; Marchiori, Giovanni; Marcisovsky, Michal; Marjanovic, Marija; Marley, Daniel; Marroquim, Fernando; Marsden, Stephen Philip; Marshall, Zach; Martensson, Mikael; Marti-Garcia, Salvador; Martin, Christopher Blake; Martin, Tim; Martin, Victoria Jane; Martin dit Latour, Bertrand; Martinez, Mario; Martinez Outschoorn, Verena; Martin-Haugh, Stewart; Martoiu, Victor Sorin; Martyniuk, Alex; Marzin, Antoine; Masetti, Lucia; Mashimo, Tetsuro; Mashinistov, Ruslan; Masik, Jiri; Maslennikov, Alexey; Massa, Lorenzo; Mastrandrea, Paolo; Mastroberardino, Anna; Masubuchi, Tatsuya; Mättig, Peter; Maurer, Julien; Maxfield, Stephen; Maximov, Dmitriy; Mazini, Rachid; Maznas, Ioannis; Mazza, Simone Michele; Mc Fadden, Neil Christopher; Mc Goldrick, Garrin; Mc Kee, Shawn Patrick; McCarn, Allison; McCarthy, Robert; McCarthy, Tom; McClymont, Laurie; McDonald, Emily; Mcfayden, Josh; Mchedlidze, Gvantsa; McMahon, Steve; McNamara, Peter Charles; McPherson, Robert; Meehan, Samuel; Megy, Theo Jean; Mehlhase, Sascha; Mehta, Andrew; Meideck, Thomas; Meier, Karlheinz; Meirose, Bernhard; Melini, Davide; Mellado Garcia, Bruce Rafael; Mellenthin, Johannes Donatus; Melo, Matej; Meloni, Federico; Menary, Stephen Burns; Meng, Lingxin; Meng, Xiangting; Mengarelli, Alberto; Menke, Sven; Meoni, Evelin; Mergelmeyer, Sebastian; Mermod, Philippe; Merola, Leonardo; Meroni, Chiara; Merritt, Frank; Messina, Andrea; Metcalfe, Jessica; Mete, Alaettin Serhan; Meyer, Christopher; Meyer, Jean-Pierre; Meyer, Jochen; Meyer Zu Theenhausen, Hanno; Miano, Fabrizio; Middleton, Robin; Miglioranzi, Silvia; Mijović, Liza; Mikenberg, Giora; Mikestikova, Marcela; Mikuž, Marko; Milesi, Marco; Milic, Adriana; Miller, David; Mills, Corrinne; Milov, Alexander; Milstead, David; Minaenko, Andrey; Minami, Yuto; Minashvili, Irakli; Mincer, Allen; Mindur, Bartosz; Mineev, Mikhail; Minegishi, Yuji; Ming, Yao; Mir, Lluisa-Maria; Mistry, Khilesh; Mitani, Takashi; Mitrevski, Jovan; Mitsou, Vasiliki A; Miucci, Antonio; Miyagawa, Paul; Mizukami, Atsushi; Mjörnmark, Jan-Ulf; Mkrtchyan, Tigran; Mlynarikova, Michaela; Moa, Torbjoern; Mochizuki, Kazuya; Mogg, Philipp; Mohapatra, Soumya; Molander, Simon; Moles-Valls, Regina; Monden, Ryutaro; Mondragon, Matthew Craig; Mönig, Klaus; Monk, James; Monnier, Emmanuel; Montalbano, Alyssa; Montejo Berlingen, Javier; Monticelli, Fernando; Monzani, Simone; Moore, Roger; Morange, Nicolas; Moreno, Deywis; Moreno Llácer, María; Morettini, Paolo; Morgenstern, Stefanie; Mori, Daniel; Mori, Tatsuya; Morii, Masahiro; Morinaga, Masahiro; Morisbak, Vanja; Morley, Anthony Keith; Mornacchi, Giuseppe; Morris, John; Morvaj, Ljiljana; Moschovakos, Paris; Mosidze, Maia; Moss, Harry James; Moss, Josh; Motohashi, Kazuki; Mount, Richard; Mountricha, Eleni; Moyse, Edward; Muanza, Steve; Mudd, Richard; Mueller, Felix; Mueller, James; Mueller, Ralph Soeren Peter; Muenstermann, Daniel; Mullen, Paul; Mullier, Geoffrey; Munoz Sanchez, Francisca Javiela; Murray, Bill; Musheghyan, Haykuhi; Muškinja, Miha; Myagkov, Alexey; Myska, Miroslav; Nachman, Benjamin Philip; Nackenhorst, Olaf; Nagai, Koichi; Nagai, Ryo; Nagano, Kunihiro; Nagasaka, Yasushi; Nagata, Kazuki; Nagel, Martin; Nagy, Elemer; Nairz, Armin Michael; Nakahama, Yu; Nakamura, Koji; Nakamura, Tomoaki; Nakano, Itsuo; Naranjo Garcia, Roger Felipe; Narayan, Rohin; Narrias Villar, Daniel Isaac; Naryshkin, Iouri; Naumann, Thomas; Navarro, Gabriela; Nayyar, Ruchika; Neal, Homer; Nechaeva, Polina; Neep, Thomas James; Negri, Andrea; Negrini, Matteo; Nektarijevic, Snezana; Nellist, Clara; Nelson, Andrew; Nelson, Michael Edward; Nemecek, Stanislav; Nemethy, Peter; Nessi, Marzio; Neubauer, Mark; Neumann, Manuel; Newman, Paul; Ng, Tsz Yu; Nguyen Manh, Tuan; Nickerson, Richard; Nicolaidou, Rosy; Nielsen, Jason; Nikolaenko, Vladimir; Nikolic-Audit, Irena; Nikolopoulos, Konstantinos; Nilsen, Jon Kerr; Nilsson, Paul; Ninomiya, Yoichi; Nisati, Aleandro; Nishu, Nishu; Nisius, Richard; Nitsche, Isabel; Nobe, Takuya; Noguchi, Yohei; Nomachi, Masaharu; Nomidis, Ioannis; Nomura, Marcelo Ayumu; Nooney, Tamsin; Nordberg, Markus; Norjoharuddeen, Nurfikri; Novgorodova, Olga; Nowak, Sebastian; Nozaki, Mitsuaki; Nozka, Libor; Ntekas, Konstantinos; Nurse, Emily; Nuti, Francesco; O'connor, Kelsey; O'Neil, Dugan; O'Rourke, Abigail Alexandra; O'Shea, Val; Oakham, Gerald; Oberlack, Horst; Obermann, Theresa; Ocariz, Jose; Ochi, Atsuhiko; Ochoa, Ines; Ochoa-Ricoux, Juan Pedro; Oda, Susumu; Odaka, Shigeru; Ogren, Harold; Oh, Alexander; Oh, Seog; Ohm, Christian; Ohman, Henrik; Oide, Hideyuki; Okawa, Hideki; Okumura, Yasuyuki; Okuyama, Toyonobu; Olariu, Albert; Oleiro Seabra, Luis Filipe; Olivares Pino, Sebastian Andres; Oliveira Damazio, Denis; Olszewski, Andrzej; Olszowska, Jolanta; Onofre, António; Onogi, Kouta; Onyisi, Peter; Oreglia, Mark; Oren, Yona; Orestano, Domizia; Orlando, Nicola; Orr, Robert; Osculati, Bianca; Ospanov, Rustem; Otero y Garzon, Gustavo; Otono, Hidetoshi; Ouchrif, Mohamed; Ould-Saada, Farid; Ouraou, Ahmimed; Oussoren, Koen Pieter; Ouyang, Qun; Owen, Mark; Owen, Rhys Edward; Ozcan, Veysi Erkcan; Ozturk, Nurcan; Pachal, Katherine; Pacheco Pages, Andres; Pacheco Rodriguez, Laura; Padilla Aranda, Cristobal; Pagan Griso, Simone; Paganini, Michela; Paige, Frank; Palacino, Gabriel; Palazzo, Serena; Palestini, Sandro; Palka, Marek; Pallin, Dominique; Panagiotopoulou, Evgenia; Panagoulias, Ilias; Pandini, Carlo Enrico; Panduro Vazquez, William; Pani, Priscilla; Panitkin, Sergey; Pantea, Dan; Paolozzi, Lorenzo; Papadopoulou, Theodora; Papageorgiou, Konstantinos; Paramonov, Alexander; Paredes Hernandez, Daniela; Parker, Adam Jackson; Parker, Michael Andrew; Parker, Kerry Ann; Parodi, Fabrizio; Parsons, John; Parzefall, Ulrich; Pascuzzi, Vincent; Pasner, Jacob Martin; Pasqualucci, Enrico; Passaggio, Stefano; Pastore, Francesca; Pataraia, Sophio; Pater, Joleen; Pauly, Thilo; Pearson, Benjamin; Pedraza Lopez, Sebastian; Pedro, Rute; Peleganchuk, Sergey; Penc, Ondrej; Peng, Cong; Peng, Haiping; Penwell, John; Peralva, Bernardo; Perego, Marta Maria; Perepelitsa, Dennis; Perini, Laura; Pernegger, Heinz; Perrella, Sabrina; Peschke, Richard; Peshekhonov, Vladimir; Peters, Krisztian; Peters, Yvonne; Petersen, Brian; Petersen, Troels; Petit, Elisabeth; Petridis, Andreas; Petridou, Chariclia; Petroff, Pierre; Petrolo, Emilio; Petrov, Mariyan; Petrucci, Fabrizio; Pettersson, Nora Emilia; Peyaud, Alan; Pezoa, Raquel; Phillips, Forrest Hays; Phillips, Peter William; Piacquadio, Giacinto; Pianori, Elisabetta; Picazio, Attilio; Piccaro, Elisa; Pickering, Mark Andrew; Piegaia, Ricardo; Pilcher, James; Pilkington, Andrew; Pin, Arnaud Willy J; Pinamonti, Michele; Pinfold, James; Pirumov, Hayk; Pitt, Michael; Plazak, Lukas; Pleier, Marc-Andre; Pleskot, Vojtech; Plotnikova, Elena; Pluth, Daniel; Podberezko, Pavel; Poettgen, Ruth; Poggi, Riccardo; Poggioli, Luc; Pohl, David-leon; Polesello, Giacomo; Poley, Anne-luise; Policicchio, Antonio; Polifka, Richard; Polini, Alessandro; Pollard, Christopher Samuel; Polychronakos, Venetios; Pommès, Kathy; Ponomarenko, Daniil; Pontecorvo, Ludovico; Pope, Bernard; Popeneciu, Gabriel Alexandru; Poppleton, Alan; Pospisil, Stanislav; Potamianos, Karolos; Potrap, Igor; Potter, Christina; Poulard, Gilbert; Poulsen, Trine; Poveda, Joaquin; Pozo Astigarraga, Mikel Eukeni; Pralavorio, Pascal; Pranko, Aliaksandr; Prell, Soeren; Price, Darren; Price, Lawrence; Primavera, Margherita; Prince, Sebastien; Proklova, Nadezda; Prokofiev, Kirill; Prokoshin, Fedor; Protopopescu, Serban; Proudfoot, James; Przybycien, Mariusz; Puri, Akshat; Puzo, Patrick; Qian, Jianming; Qin, Gang; Qin, Yang; Quadt, Arnulf; Queitsch-Maitland, Michaela; Quilty, Donnchadha; Raddum, Silje; Radeka, Veljko; Radescu, Voica; Radhakrishnan, Sooraj Krishnan; Radloff, Peter; Rados, Pere; Ragusa, Francesco; Rahal, Ghita; Raine, John Andrew; Rajagopalan, Srinivasan; Rangel-Smith, Camila; Rashid, Tasneem; Raspopov, Sergii; Ratti, Maria Giulia; Rauch, Daniel; Rauscher, Felix; Rave, Stefan; Ravinovich, Ilia; Rawling, Jacob Henry; Raymond, Michel; Read, Alexander Lincoln; Readioff, Nathan Peter; Reale, Marilea; Rebuzzi, Daniela; Redelbach, Andreas; Redlinger, George; Reece, Ryan; Reed, Robert; Reeves, Kendall; Rehnisch, Laura; Reichert, Joseph; Reiss, Andreas; Rembser, Christoph; Ren, Huan; Rescigno, Marco; Resconi, Silvia; Resseguie, Elodie Deborah; Rettie, Sebastien; Reynolds, Elliot; Rezanova, Olga; Reznicek, Pavel; Rezvani, Reyhaneh; Richter, Robert; Richter, Stefan; Richter-Was, Elzbieta; Ricken, Oliver; Ridel, Melissa; Rieck, Patrick; Riegel, Christian Johann; Rieger, Julia; Rifki, Othmane; Rijssenbeek, Michael; Rimoldi, Adele; Rimoldi, Marco; Rinaldi, Lorenzo; Ripellino, Giulia; Ristić, Branislav; Ritsch, Elmar; Riu, Imma; Rizatdinova, Flera; Rizvi, Eram; Rizzi, Chiara; Roberts, Rhys Thomas; Robertson, Steven; Robichaud-Veronneau, Andree; Robinson, Dave; Robinson, James; Robson, Aidan; Rocco, Elena; Roda, Chiara; Rodina, Yulia; Rodriguez Bosca, Sergi; Rodriguez Perez, Andrea; Rodriguez Rodriguez, Daniel; Roe, Shaun; Rogan, Christopher Sean; Røhne, Ole; Roloff, Jennifer; Romaniouk, Anatoli; Romano, Marino; Romano Saez, Silvestre Marino; Romero Adam, Elena; Rompotis, Nikolaos; Ronzani, Manfredi; Roos, Lydia; Rosati, Stefano; Rosbach, Kilian; Rose, Peyton; Rosien, Nils-Arne; Rossi, Elvira; Rossi, Leonardo Paolo; Rosten, Jonatan; Rosten, Rachel; Rotaru, Marina; Roth, Itamar; Rothberg, Joseph; Rousseau, David; Rozanov, Alexandre; Rozen, Yoram; Ruan, Xifeng; Rubbo, Francesco; Rühr, Frederik; Ruiz-Martinez, Aranzazu; Rurikova, Zuzana; Rusakovich, Nikolai; Russell, Heather; Rutherfoord, John; Ruthmann, Nils; Ryabov, Yury; Rybar, Martin; Rybkin, Grigori; Ryu, Soo; Ryzhov, Andrey; Rzehorz, Gerhard Ferdinand; Saavedra, Aldo; Sabato, Gabriele; Sacerdoti, Sabrina; Sadrozinski, Hartmut; Sadykov, Renat; Safai Tehrani, Francesco; Saha, Puja; Sahinsoy, Merve; Saimpert, Matthias; Saito, Masahiko; Saito, Tomoyuki; Sakamoto, Hiroshi; Sakurai, Yuki; Salamanna, Giuseppe; Salazar Loyola, Javier Esteban; Salek, David; Sales De Bruin, Pedro Henrique; Salihagic, Denis; Salnikov, Andrei; Salt, José; Salvatore, Daniela; Salvatore, Pasquale Fabrizio; Salvucci, Antonio; Salzburger, Andreas; Sammel, Dirk; Sampsonidis, Dimitrios; Sampsonidou, Despoina; Sánchez, Javier; Sanchez Martinez, Victoria; Sanchez Pineda, Arturo Rodolfo; Sandaker, Heidi; Sandbach, Ruth Laura; Sander, Christian Oliver; Sandhoff, Marisa; Sandoval, Carlos; Sankey, Dave; Sannino, Mario; Sansoni, Andrea; Santoni, Claudio; Santonico, Rinaldo; Santos, Helena; Santoyo Castillo, Itzebelt; Sapronov, Andrey; Saraiva, João; Sarrazin, Bjorn; Sasaki, Osamu; Sato, Koji; Sauvan, Emmanuel; Savage, Graham; Savard, Pierre; Savic, Natascha; Sawyer, Craig; Sawyer, Lee; Saxon, James; Sbarra, Carla; Sbrizzi, Antonio; Scanlon, Tim; Scannicchio, Diana; Scarcella, Mark; Scarfone, Valerio; Schaarschmidt, Jana; Schacht, Peter; Schachtner, Balthasar Maria; Schaefer, Douglas; Schaefer, Leigh; Schaefer, Ralph; Schaeffer, Jan; Schaepe, Steffen; Schaetzel, Sebastian; Schäfer, Uli; Schaffer, Arthur; Schaile, Dorothee; Schamberger, R Dean; Scharf, Veit; Schegelsky, Valery; Scheirich, Daniel; Schernau, Michael; Schiavi, Carlo; Schier, Sheena; Schildgen, Lara Katharina; Schillo, Christian; Schioppa, Marco; Schlenker, Stefan; Schmidt-Sommerfeld, Korbinian Ralf; Schmieden, Kristof; Schmitt, Christian; Schmitt, Stefan; Schmitz, Simon; Schnoor, Ulrike; Schoeffel, Laurent; Schoening, Andre; Schoenrock, Bradley Daniel; Schopf, Elisabeth; Schott, Matthias; Schouwenberg, Jeroen; Schovancova, Jaroslava; Schramm, Steven; Schuh, Natascha; Schulte, Alexandra; Schultens, Martin Johannes; Schultz-Coulon, Hans-Christian; Schulz, Holger; Schumacher, Markus; Schumm, Bruce; Schune, Philippe; Schwartzman, Ariel; Schwarz, Thomas Andrew; Schweiger, Hansdieter; Schwemling, Philippe; Schwienhorst, Reinhard; Schwindling, Jerome; Sciandra, Andrea; Sciolla, Gabriella; Scuri, Fabrizio; Scutti, Federico; Searcy, Jacob; Seema, Pienpen; Seidel, Sally; Seiden, Abraham; Seixas, José; Sekhniaidze, Givi; Sekhon, Karishma; Sekula, Stephen; Semprini-Cesari, Nicola; Senkin, Sergey; Serfon, Cedric; Serin, Laurent; Serkin, Leonid; Sessa, Marco; Seuster, Rolf; Severini, Horst; Sfiligoj, Tina; Sforza, Federico; Sfyrla, Anna; Shabalina, Elizaveta; Shaikh, Nabila Wahab; Shan, Lianyou; Shang, Ruo-yu; Shank, James; Shapiro, Marjorie; Shatalov, Pavel; Shaw, Kate; Shaw, Savanna Marie; Shcherbakova, Anna; Shehu, Ciwake Yusufu; Shen, Yu-Ting; Sherafati, Nima; Sherwood, Peter; Shi, Liaoshan; Shimizu, Shima; Shimmin, Chase Owen; Shimojima, Makoto; Shipsey, Ian Peter Joseph; Shirabe, Shohei; Shiyakova, Mariya; Shlomi, Jonathan; Shmeleva, Alevtina; Shoaleh Saadi, Diane; Shochet, Mel; Shojaii, Seyed Ruhollah; Shope, David Richard; Shrestha, Suyog; Shulga, Evgeny; Shupe, Michael; Sicho, Petr; Sickles, Anne Marie; Sidebo, Per Edvin; Sideras Haddad, Elias; Sidiropoulou, Ourania; Sidoti, Antonio; Siegert, Frank; Sijacki, Djordje; Silva, José; Silverstein, Samuel; Simak, Vladislav; Simic, Ljiljana; Simion, Stefan; Simioni, Eduard; Simmons, Brinick; Simon, Manuel; Sinervo, Pekka; Sinev, Nikolai; Sioli, Maximiliano; Siragusa, Giovanni; Siral, Ismet; Sivoklokov, Serguei; Sjölin, Jörgen; Skinner, Malcolm Bruce; Skubic, Patrick; Slater, Mark; Slavicek, Tomas; Slawinska, Magdalena; Sliwa, Krzysztof; Slovak, Radim; Smakhtin, Vladimir; Smart, Ben; Smiesko, Juraj; Smirnov, Nikita; Smirnov, Sergei; Smirnov, Yury; Smirnova, Lidia; Smirnova, Oxana; Smith, Joshua Wyatt; Smith, Matthew; Smith, Russell; Smizanska, Maria; Smolek, Karel; Snesarev, Andrei; Snyder, Ian Michael; Snyder, Scott; Sobie, Randall; Socher, Felix; Soffer, Abner; Soh, Dart-yin; Sokhrannyi, Grygorii; Solans Sanchez, Carlos; Solar, Michael; Soldatov, Evgeny; Soldevila, Urmila; Solodkov, Alexander; Soloshenko, Alexei; Solovyanov, Oleg; Solovyev, Victor; Sommer, Philip; Son, Hyungsuk; Sopczak, Andre; Sosa, David; Sotiropoulou, Calliope Louisa; Soualah, Rachik; Soukharev, Andrey; South, David; Sowden, Benjamin; Spagnolo, Stefania; Spalla, Margherita; Spangenberg, Martin; Spanò, Francesco; Sperlich, Dennis; Spettel, Fabian; Spieker, Thomas Malte; Spighi, Roberto; Spigo, Giancarlo; Spiller, Laurence Anthony; Spousta, Martin; St Denis, Richard Dante; Stabile, Alberto; Stamen, Rainer; Stamm, Soren; Stanecka, Ewa; Stanek, Robert; Stanescu, Cristian; Stanitzki, Marcel Michael; Stapf, Birgit Sylvia; Stapnes, Steinar; Starchenko, Evgeny; Stark, Giordon; Stark, Jan; Stark, Simon Holm; Staroba, Pavel; Starovoitov, Pavel; Stärz, Steffen; Staszewski, Rafal; Steinberg, Peter; Stelzer, Bernd; Stelzer, Harald Joerg; Stelzer-Chilton, Oliver; Stenzel, Hasko; Stewart, Graeme; Stockton, Mark; Stoebe, Michael; Stoicea, Gabriel; Stolte, Philipp; Stonjek, Stefan; Stradling, Alden; Straessner, Arno; Stramaglia, Maria Elena; Strandberg, Jonas; Strandberg, Sara; Strauss, Michael; Strizenec, Pavol; Ströhmer, Raimund; Strom, David; Stroynowski, Ryszard; Strubig, Antonia; Stucci, Stefania Antonia; Stugu, Bjarne; Styles, Nicholas Adam; Su, Dong; Su, Jun; Suchek, Stanislav; Sugaya, Yorihito; Suk, Michal; Sulin, Vladimir; Sultan, D M S; Sultansoy, Saleh; Sumida, Toshi; Sun, Siyuan; Sun, Xiaohu; Suruliz, Kerim; Suster, Carl; Sutton, Mark; Suzuki, Shota; Svatos, Michal; Swiatlowski, Maximilian; Swift, Stewart Patrick; Sykora, Ivan; Sykora, Tomas; Ta, Duc; Tackmann, Kerstin; Taenzer, Joe; Taffard, Anyes; Tafirout, Reda; Taiblum, Nimrod; Takai, Helio; Takashima, Ryuichi; Takasugi, Eric Hayato; Takeshita, Tohru; Takubo, Yosuke; Talby, Mossadek; Talyshev, Alexey; Tanaka, Junichi; Tanaka, Masahiro; Tanaka, Reisaburo; Tanaka, Shuji; Tanioka, Ryo; Tannenwald, Benjamin Bordy; Tapia Araya, Sebastian; Tapprogge, Stefan; Tarem, Shlomit; Tartarelli, Giuseppe Francesco; Tas, Petr; Tasevsky, Marek; Tashiro, Takuya; Tassi, Enrico; Tavares Delgado, Ademar; Tayalati, Yahya; Taylor, Aaron; Taylor, Geoffrey; Taylor, Pierre Thor Elliot; Taylor, Wendy; Teixeira-Dias, Pedro; Temple, Darren; Ten Kate, Herman; Teng, Ping-Kun; Teoh, Jia Jian; Tepel, Fabian-Phillipp; Terada, Susumu; Terashi, Koji; Terron, Juan; Terzo, Stefano; Testa, Marianna; Teuscher, Richard; Theveneaux-Pelzer, Timothée; Thomas, Juergen; Thomas-Wilsker, Joshuha; Thompson, Paul; Thompson, Stan; Thomsen, Lotte Ansgaard; Thomson, Evelyn; Tibbetts, Mark James; Ticse Torres, Royer Edson; Tikhomirov, Vladimir; Tikhonov, Yury; Timoshenko, Sergey; Tipton, Paul; Tisserant, Sylvain; Todome, Kazuki; Todorova-Nova, Sharka; Tojo, Junji; Tokár, Stanislav; Tokushuku, Katsuo; Tolley, Emma; Tomlinson, Lee; Tomoto, Makoto; Tompkins, Lauren; Toms, Konstantin; Tong, Baojia(Tony); Tornambe, Peter; Torrence, Eric; Torres, Heberth; Torró Pastor, Emma; Toth, Jozsef; Touchard, Francois; Tovey, Daniel; Treado, Colleen Jennifer; Trefzger, Thomas; Tresoldi, Fabio; Tricoli, Alessandro; Trigger, Isabel Marian; Trincaz-Duvoid, Sophie; Tripiana, Martin; Trischuk, William; Trocmé, Benjamin; Trofymov, Artur; Troncon, Clara; Trottier-McDonald, Michel; Trovatelli, Monica; Truong, Loan; Trzebinski, Maciej; Trzupek, Adam; Tsang, Ka Wa; Tseng, Jeffrey; Tsiareshka, Pavel; Tsipolitis, Georgios; Tsirintanis, Nikolaos; Tsiskaridze, Shota; Tsiskaridze, Vakhtang; Tskhadadze, Edisher; Tsui, Ka Ming; Tsukerman, Ilya; Tsulaia, Vakhtang; Tsuno, Soshi; Tsybychev, Dmitri; Tu, Yanjun; Tudorache, Alexandra; Tudorache, Valentina; Tulbure, Traian Tiberiu; Tuna, Alexander Naip; Tupputi, Salvatore; Turchikhin, Semen; Turgeman, Daniel; Turk Cakir, Ilkay; Turra, Ruggero; Tuts, Michael; Ucchielli, Giulia; Ueda, Ikuo; Ughetto, Michael; Ukegawa, Fumihiko; Unal, Guillaume; Undrus, Alexander; Unel, Gokhan; Ungaro, Francesca; Unno, Yoshinobu; Unverdorben, Christopher; Urban, Jozef; Urquijo, Phillip; Urrejola, Pedro; Usai, Giulio; Usui, Junya; Vacavant, Laurent; Vacek, Vaclav; Vachon, Brigitte; Valderanis, Chrysostomos; Valdes Santurio, Eduardo; Valentinetti, Sara; Valero, Alberto; Valéry, Lo\\"ic; Valkar, Stefan; Vallier, Alexis; Valls Ferrer, Juan Antonio; Van Den Wollenberg, Wouter; van der Graaf, Harry; van Gemmeren, Peter; Van Nieuwkoop, Jacobus; van Vulpen, Ivo; van Woerden, Marius Cornelis; Vanadia, Marco; Vandelli, Wainer; Vaniachine, Alexandre; Vankov, Peter; Vardanyan, Gagik; Vari, Riccardo; Varnes, Erich; Varni, Carlo; Varol, Tulin; Varouchas, Dimitris; Vartapetian, Armen; Varvell, Kevin; Vasquez, Jared Gregory; Vasquez, Gerardo; Vazeille, Francois; Vazquez Schroeder, Tamara; Veatch, Jason; Veeraraghavan, Venkatesh; Veloce, Laurelle Maria; Veloso, Filipe; Veneziano, Stefano; Ventura, Andrea; Venturi, Manuela; Venturi, Nicola; Venturini, Alessio; Vercesi, Valerio; Verducci, Monica; Verkerke, Wouter; Vermeulen, Ambrosius Thomas; Vermeulen, Jos; Vetterli, Michel; Viaux Maira, Nicolas; Viazlo, Oleksandr; Vichou, Irene; Vickey, Trevor; Vickey Boeriu, Oana Elena; Viehhauser, Georg; Viel, Simon; Vigani, Luigi; Villa, Mauro; Villaplana Perez, Miguel; Vilucchi, Elisabetta; Vincter, Manuella; Vinogradov, Vladimir; Vishwakarma, Akanksha; Vittori, Camilla; Vivarelli, Iacopo; Vlachos, Sotirios; Vlasak, Michal; Vogel, Marcelo; Vokac, Petr; Volpi, Guido; von der Schmitt, Hans; von Toerne, Eckhard; Vorobel, Vit; Vorobev, Konstantin; Vos, Marcel; Voss, Rudiger; Vossebeld, Joost; Vranjes, Nenad; Vranjes Milosavljevic, Marija; Vrba, Vaclav; Vreeswijk, Marcel; Vuillermet, Raphael; Vukotic, Ilija; Wagner, Peter; Wagner, Wolfgang; Wagner-Kuhr, Jeannine; Wahlberg, Hernan; Wahrmund, Sebastian; Wakabayashi, Jun; Walder, James; Walker, Rodney; Walkowiak, Wolfgang; Wallangen, Veronica; Wang, Chao; Wang, Chao; Wang, Fuquan; Wang, Haichen; Wang, Hulin; Wang, Jike; Wang, Jin; Wang, Qing; Wang, Rui; Wang, Song-Ming; Wang, Tingting; Wang, Wei; Wang, Wenxiao; Wang, Zirui; Wanotayaroj, Chaowaroj; Warburton, Andreas; Ward, Patricia; Wardrope, David Robert; Washbrook, Andrew; Watkins, Peter; Watson, Alan; Watson, Miriam; Watts, Gordon; Watts, Stephen; Waugh, Ben; Webb, Aaron Foley; Webb, Samuel; Weber, Michele; Weber, Stefan Wolf; Weber, Stephen; Webster, Jordan S; Weidberg, Anthony; Weinert, Benjamin; Weingarten, Jens; Weirich, Marcel; Weiser, Christian; Weits, Hartger; Wells, Phillippa; Wenaus, Torre; Wengler, Thorsten; Wenig, Siegfried; Wermes, Norbert; Werner, Michael David; Werner, Per; Wessels, Martin; Whalen, Kathleen; Whallon, Nikola Lazar; Wharton, Andrew Mark; White, Aaron; White, Andrew; White, Martin; White, Ryan; Whiteson, Daniel; Whitmore, Ben William; Wickens, Fred; Wiedenmann, Werner; Wielers, Monika; Wiglesworth, Craig; Wiik-Fuchs, Liv Antje Mari; Wildauer, Andreas; Wilk, Fabian; Wilkens, Henric George; Williams, Hugh; Williams, Sarah; Willis, Christopher; Willocq, Stephane; Wilson, John; Wingerter-Seez, Isabelle; Winkels, Emma; Winklmeier, Frank; Winston, Oliver James; Winter, Benedict Tobias; Wittgen, Matthias; Wobisch, Markus; Wolf, Tim Michael Heinz; Wolff, Robert; Wolter, Marcin Wladyslaw; Wolters, Helmut; Wong, Vincent Wai Sum; Worm, Steven; Wosiek, Barbara; Wotschack, Jorg; Wozniak, Krzysztof; Wu, Miles; Wu, Sau Lan; Wu, Xin; Wu, Yusheng; Wyatt, Terry Richard; Wynne, Benjamin; Xella, Stefania; Xi, Zhaoxu; Xia, Ligang; Xu, Da; Xu, Lailin; Yabsley, Bruce; Yacoob, Sahal; Yamaguchi, Daiki; Yamaguchi, Yohei; Yamamoto, Akira; Yamamoto, Shimpei; Yamanaka, Takashi; Yamatani, Masahiro; Yamauchi, Katsuya; Yamazaki, Yuji; Yan, Zhen; Yang, Haijun; Yang, Hongtao; Yang, Yi; Yang, Zongchang; Yao, Weiming; Yap, Yee Chinn; Yasu, Yoshiji; Yatsenko, Elena; Yau Wong, Kaven Henry; Ye, Jingbo; Ye, Shuwei; Yeletskikh, Ivan; Yigitbasi, Efe; Yildirim, Eda; Yorita, Kohei; Yoshihara, Keisuke; Young, Charles; Young, Christopher John; Yu, Jaehoon; Yu, Jie; Yuen, Stephanie P; Yusuff, Imran; Zabinski, Bartlomiej; Zacharis, Georgios; Zaidan, Remi; Zaitsev, Alexander; Zakharchuk, Nataliia; Zalieckas, Justas; Zaman, Aungshuman; Zambito, Stefano; Zanzi, Daniele; Zeitnitz, Christian; Zemaityte, Gabija; Zemla, Andrzej; Zeng, Jian Cong; Zeng, Qi; Zenin, Oleg; Ženiš, Tibor; Zerwas, Dirk; Zhang, Dongliang; Zhang, Fangzhou; Zhang, Guangyi; Zhang, Huijun; Zhang, Jinlong; Zhang, Lei; Zhang, Liqing; Zhang, Matt; Zhang, Peng; Zhang, Rui; Zhang, Ruiqi; Zhang, Xueyao; Zhang, Yu; Zhang, Zhiqing; Zhao, Xiandong; Zhao, Yongke; Zhao, Zhengguo; Zhemchugov, Alexey; Zhou, Bing; Zhou, Chen; Zhou, Li; Zhou, Maosen; Zhou, Mingliang; Zhou, Ning; Zhu, Cheng Guang; Zhu, Hongbo; Zhu, Junjie; Zhu, Yingchun; Zhuang, Xuai; Zhukov, Konstantin; Zibell, Andre; Zieminska, Daria; Zimine, Nikolai; Zimmermann, Christoph; Zimmermann, Stephanie; Zinonos, Zinonas; Zinser, Markus; Ziolkowski, Michael; Živković, Lidija; Zobernig, Georg; Zoccoli, Antonio; Zou, Rui; zur Nedden, Martin; Zwalinski, Lukasz
2017-10-11
Abstract: With the increase in energy of the Large Hadron Collider to a centre-of-mass energy of 13 TeV for Run 2, events with dense environments, such as in the cores of high-energy jets, became a focus for new physics searches as well as measurements of the Standard Model. These environments are characterized by charged-particle separations of the order of the tracking detectors sensor granularity. Basic track quantities are compared between 3.2 fb$^{-1}$ of data collected by the ATLAS experiment and simulation of proton-proton collisions producing high-transverse-momentum jets at a centre-of-mass energy of 13 TeV. The impact of charged-particle separations and multiplicities on the track reconstruction performance is discussed. The efficiency in the cores of jets with transverse momenta between 200 GeV and 1600 GeV is quantified using a novel, data-driven, method. The method uses the energy loss, dE/dx, to identify pixel clusters originating from two charged particles. Of the charged particles creating the...
Olaciregui-Ruiz, Igor; Rozendaal, Roel; van Oers, René F M; Mijnheer, Ben; Mans, Anton
2017-05-01
At our institute, a transit back-projection algorithm is used clinically to reconstruct in vivo patient and in phantom 3D dose distributions using EPID measurements behind a patient or a polystyrene slab phantom, respectively. In this study, an extension to this algorithm is presented whereby in air EPID measurements are used in combination with CT data to reconstruct 'virtual' 3D dose distributions. By combining virtual and in vivo patient verification data for the same treatment, patient-related errors can be separated from machine, planning and model errors. The virtual back-projection algorithm is described and verified against the transit algorithm with measurements made behind a slab phantom, against dose measurements made with an ionization chamber and with the OCTAVIUS 4D system, as well as against TPS patient data. Virtual and in vivo patient dose verification results are also compared. Virtual dose reconstructions agree within 1% with ionization chamber measurements. The average γ-pass rate values (3% global dose/3mm) in the 3D dose comparison with the OCTAVIUS 4D system and the TPS patient data are 98.5±1.9%(1SD) and 97.1±2.9%(1SD), respectively. For virtual patient dose reconstructions, the differences with the TPS in median dose to the PTV remain within 4%. Virtual patient dose reconstruction makes pre-treatment verification based on deviations of DVH parameters feasible and eliminates the need for phantom positioning and re-planning. Virtual patient dose reconstructions have additional value in the inspection of in vivo deviations, particularly in situations where CBCT data is not available (or not conclusive). Copyright © 2017 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.
A new reconstruction algorithm of the cell production kinetics for conifer species
Popkova, Margarita; Shishov, Vladimir; Tychkov, Ivan
2017-04-01
Tree-rings are important to reconstruct past environmental conditions. To describe and to understand development of tree-ring formation and predict the wood characteristics, a process-based modeling of wood formation have great potentials. Seasonal dynamics of tree growth can be explained by tree-ring growth, individual features of tree and external climatic conditions. The main anatomical characteristics of tree ring structure, e.g. the number of cells, the radial cell size and cell walls thickness are closely related to the kinetic characteristics of seasonal tree-ring formation, especially with the kinetics of cell production. Due to specificity of these processes and complexity of labor-intensive experimental methods (reference) mathematical modeling can be considered as an one possible approach, which requires to develop adequate mathematical methods and corresponded software components. In modern times the most process-based models simulate biomass production only with no possibility to determine the processes of cell production by cambium and differentiation cambial derivatives. A new block of the Vaganov-Shashkin model was proposed to estimate a cell production in tree rings and transfer it into time scale based on the simulated integral growth rates of the model. Here the VS-modeling is extremely important step because the simulated daily tree-ring growth rate is a basis to evaluate intra-seasonal variation of cambial production. The comparative analysis of the growth rates with one of the main tree-ring anatomical characteristics of conifers - radial cells size was carried out to provide a new procedure of timing cambium cell production during the season. Based on the previous research experience when the seasonal tree-growth dynamics were analyzed by direct (cutting, etc.) and indirect methods, the new proposed method is free from any complexity and limitations accompanying previous methods. The work was supported by the Russian Science Foundation (RSF
Directory of Open Access Journals (Sweden)
J.W. Jayasinghe
2013-09-01
Full Text Available A single high-directivity microstrip patch antenna (MPA having a rectangular profile, which can substitute a linear array is proposed. It is designed by using genetic algorithms with the advantage of not requiring a feeding network. The patch fits inside an area of 2.54lambda x 0.25lambda, resulting in a broadside pattern with a directivity of 12 dBi and a fractional impedance bandwidth of 4%. The antenna is fabricated and the measurements are in good agreement with the simulated results. The genetic MPA provides a similar directivity as linear arrays using a corporate or series feeding, with the advantage that the genetic MPA results in more bandwidth.
Zhu, W; Wang, Y; Yao, Y; Chang, J; Graber, H L; Barbour, R L
1997-04-01
We present an iterative total least-squares algorithm for computing images of the interior structure of highly scattering media by using the conjugate gradient method. For imaging the dense scattering media in optical tomography, a perturbation approach has been described previously [Y. Wang et al., Proc. SPIE 1641, 58 (1992); R. L. Barbour et al., in Medical Optical Tomography: Functional Imaging and Monitoring (Society of Photo-Optical Instrumentation Engineers, Bellingham, Wash., 1993), pp. 87-120], which solves a perturbation equation of the form W delta x = delta I. In order to solve this equation, least-squares or regularized least-squares solvers have been used in the past to determine best fits to the measurement data delta I while assuming that the operator matrix W is accurate. In practice, errors also occur in the operator matrix. Here we propose an iterative total least-squares (ITLS) method that minimizes the errors in both weights and detector readings. Theoretically, the total least-squares (TLS) solution is given by the singular vector of the matrix [W/ delta I] associated with the smallest singular value. The proposed ITLS method obtains this solution by using a conjugate gradient method that is particularly suitable for very large matrices. Simulation results have shown that the TLS method can yield a significantly more accurate result than the least-squares method.
Offline Reconstruction Algorithms for the CMS High Granularity Calorimeter for HL-LHC
Chen, Z; Meschi, Emilio; Scott, Edward John Titman; Seez, Christopher
2017-01-01
The upgraded High Luminosity LHC, after the third Long Shutdown (LS3), will provide an instantaneous luminosity of $7.5 \\times 10^{34}$ cm$^{-2}$ s$^{-1}$ (levelled), at theCollaboration price of extreme pileup of up to 200 interactions per crossing. Such extreme pileup poses significant challenges, in particular for forward calorimetry. As part of its HL-LHC upgrade program, the CMS collaboration is designing a High Granularity Calorimeter to replace the existing endcap calorimeters. It features unprecedented transverse and longitudinal segmentation for both electromagnetic and hadronic compartments. The electromagnetic and a large fraction of the hadronic portions will be based on hexagonal silicon sensors of 0.5 - 1 cm$^2$ cell size, with the remainder of the hadronic portion based on highly-segmented scintillators with SiPM readout. Offline clustering algorithms that make use of this extreme granularity require novel approaches to preserve the fine structure of showers and to be stable against pileup, wh...
Applications of an Improved Time-Frequency Filtering Algorithm to Signal Reconstruction
Directory of Open Access Journals (Sweden)
Junbo Long
2017-01-01
Full Text Available The short time Fourier transform time-frequency representation (STFT-TFR method degenerates, and the corresponding short time Fourier transform time-frequency filtering (STFT-TFF method fails under α stable distribution noise environment. A fractional low order short time Fourier transform (FLOSTFT which takes advantage of fractional p order moment is proposed for α stable distribution noise environment, and the corresponding FLOSTFT time-frequency representation (FLOSTFT-TFR algorithm is presented in this paper. We study vector formulation of the FLOSTFT and inverse FLOSTFT (IFLOSTFT methods and propose a FLOSTFT time-frequency filtering (FLOSTFT-TFF method which takes advantage of time-frequency localized spectra of the signal in time-frequency domain. The simulation results show that, employing the FLOSTFT-TFR method and the FLOSTFT-TFF method with an adaptive weight function, time-frequency distribution of the signals can be better gotten and time-frequency localized region of the signal can be effectively extracted from α stable distribution noise, and also the original signal can be restored employing the IFLOSTFT method. Their performances are better than the STFT-TFR and STFT-TFF methods, and MSEs are smaller in different α and GSNR cases. Finally, we apply the FLOSTFT-TFR and FLOSTFT-TFF methods to extract fault features of the bearing outer race fault signal and restore the original fault signal from α stable distribution noise; the experimental results illustrate their performances.
Indian Academy of Sciences (India)
Algorithms. 3. Procedures and Recursion. R K Shyamasundar. In this article we introduce procedural abstraction and illustrate its uses. Further, we illustrate the notion of recursion which is one of the most useful features of procedural abstraction. Procedures. Let us consider a variation of the pro blem of summing the first M.
Indian Academy of Sciences (India)
number of elements. We shall illustrate the widely used matrix multiplication algorithm using the two dimensional arrays in the following. Consider two matrices A and B of integer type with di- mensions m x nand n x p respectively. Then, multiplication of. A by B denoted, A x B , is defined by matrix C of dimension m xp where.
Harmon, Tyler S; Crabtree, Michael D; Shammas, Sarah L; Posey, Ammon E; Clarke, Jane; Pappu, Rohit V
2016-09-01
Many intrinsically disordered proteins (IDPs) participate in coupled folding and binding reactions and form alpha helical structures in their bound complexes. Alanine, glycine, or proline scanning mutagenesis approaches are often used to dissect the contributions of intrinsic helicities to coupled folding and binding. These experiments can yield confounding results because the mutagenesis strategy changes the amino acid compositions of IDPs. Therefore, an important next step in mutagenesis-based approaches to mechanistic studies of coupled folding and binding is the design of sequences that satisfy three major constraints. These are (i) achieving a target intrinsic alpha helicity profile; (ii) fixing the positions of residues corresponding to the binding interface; and (iii) maintaining the native amino acid composition. Here, we report the development of a G: enetic A: lgorithm for D: esign of I: ntrinsic secondary S: tructure (GADIS) for designing sequences that satisfy the specified constraints. We describe the algorithm and present results to demonstrate the applicability of GADIS by designing sequence variants of the intrinsically disordered PUMA system that undergoes coupled folding and binding to Mcl-1. Our sequence designs span a range of intrinsic helicity profiles. The predicted variations in sequence-encoded mean helicities are tested against experimental measurements. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.
Directory of Open Access Journals (Sweden)
S. Helama
2009-03-01
Full Text Available Tree-rings tell of past climates. To do so, tree-ring chronologies comprising numerous climate-sensitive living-tree and subfossil time-series need to be "transferred" into palaeoclimate estimates using transfer functions. The purpose of this study is to compare different types of transfer functions, especially linear and nonlinear algorithms. Accordingly, multiple linear regression (MLR, linear scaling (LSC and artificial neural networks (ANN, nonlinear algorithm were compared. Transfer functions were built using a regional tree-ring chronology and instrumental temperature observations from Lapland (northern Finland and Sweden. In addition, conventional MLR was compared with a hybrid model whereby climate was reconstructed separately for short- and long-period timescales prior to combining the bands of timescales into a single hybrid model. The fidelity of the different reconstructions was validated against instrumental climate data. The reconstructions by MLR and ANN showed reliable reconstruction capabilities over the instrumental period (AD 1802–1998. LCS failed to reach reasonable verification statistics and did not qualify as a reliable reconstruction: this was due mainly to exaggeration of the low-frequency climatic variance. Over this instrumental period, the reconstructed low-frequency amplitudes of climate variability were rather similar by MLR and ANN. Notably greater differences between the models were found over the actual reconstruction period (AD 802–1801. A marked temperature decline, as reconstructed by MLR, from the Medieval Warm Period (AD 931–1180 to the Little Ice Age (AD 1601–1850, was evident in all the models. This decline was approx. 0.5°C as reconstructed by MLR. Different ANN based palaeotemperatures showed simultaneous cooling of 0.2 to 0.5°C, depending on algorithm. The hybrid MLR did not seem to provide further benefit above conventional MLR in our sample. The robustness of the conventional MLR over the
Energy Technology Data Exchange (ETDEWEB)
Helama, S.; Holopainen, J.; Eronen, M. [Department of Geology, University of Helsinki, (Finland); Makarenko, N.G. [Russian Academy of Sciences, St. Petersburg (Russian Federation). Pulkovo Astronomical Observatory; Karimova, L.M.; Kruglun, O.A. [Institute of Mathematics, Almaty (Kazakhstan); Timonen, M. [Finnish Forest Research Institute, Rovaniemi Research Unit (Finland); Merilaeinen, J. [SAIMA Unit of the Savonlinna Department of Teacher Education, University of Joensuu (Finland)
2009-07-01
Tree-rings tell of past climates. To do so, tree-ring chronologies comprising numerous climate-sensitive living-tree and subfossil time-series need to be 'transferred' into palaeoclimate estimates using transfer functions. The purpose of this study is to compare different types of transfer functions, especially linear and nonlinear algorithms. Accordingly, multiple linear regression (MLR), linear scaling (LSC) and artificial neural networks (ANN, nonlinear algorithm) were compared. Transfer functions were built using a regional tree-ring chronology and instrumental temperature observations from Lapland (northern Finland and Sweden). In addition, conventional MLR was compared with a hybrid model whereby climate was reconstructed separately for short- and long-period timescales prior to combining the bands of timescales into a single hybrid model. The fidelity of the different reconstructions was validated against instrumental climate data. The reconstructions by MLR and ANN showed reliable reconstruction capabilities over the instrumental period (AD 1802-1998). LCS failed to reach reasonable verification statistics and did not qualify as a reliable reconstruction: this was due mainly to exaggeration of the low-frequency climatic variance. Over this instrumental period, the reconstructed low-frequency amplitudes of climate variability were rather similar by MLR and ANN. Notably greater differences between the models were found over the actual reconstruction period (AD 802-1801). A marked temperature decline, as reconstructed by MLR, from the Medieval Warm Period (AD 931-1180) to the Little Ice Age (AD 1601-1850), was evident in all the models. This decline was approx. 0.5 C as reconstructed by MLR. Different ANN based palaeotemperatures showed simultaneous cooling of 0.2 to 0.5 C, depending on algorithm. The hybrid MLR did not seem to provide further benefit above conventional MLR in our sample. The robustness of the conventional MLR over the calibration
An Improved Ozone Profile Algorithm for the Airborne GeoTASO Sensor
Kurosu, T. P.; Natraj, V.; Neu, J. L.
2016-12-01
The Geostationary Trace gas and Aerosol Sensor Optimization (GeoTASO) is an airborne UV/Visible CCD spectrometer that was developed in support of the upcoming US TEMPO EV-I mission. The GeoTASO instrument consists of two channels that cover the spectral ranges of 290-300 nm and 415-695 nm with 0.28-0.49 nm (UV) and 0.56-0.98 nm (Vis) spectral resolution. At a typical flight altitude of 11 km, the 45° field of view results in a 9 km wide swath sub-divided into 1000 cross-track pixels. The instantaneous field of view records ground pixels of 50-80 m along-track, depending on detector integration time and aircraft speed relative to ground. GeoTASO observation targets include ozone, SO2, NO2, H2CO, C2H2O2, and aerosols. As part of the GEO-CAPE project, JPL has been developing retrieval algorithms for NO2 columns and ozone profiles from GeoTASO observations. The retrieval approach combines state-of-the-art non-linear least squares minimization techniques with new developments in fast radiative transfer that eliminates the need for tabulated air mass factors. We present first results of our retrievals of ozone profiles, NO2 columns, and interfering species, from GeoTASO observations acquired during the 2014 Denver flight campaign. We investigate the impact of combined UV/Visible multi-band spectral fitting approaches on the performance of the ozone profile retrieval, and their potential for application to geostationary observations.
Dorier, Julien; Crespo, Isaac; Niknejad, Anne; Liechti, Robin; Ebeling, Martin; Xenarios, Ioannis
2016-10-06
Prior knowledge networks (PKNs) provide a framework for the development of computational biological models, including Boolean models of regulatory networks which are the focus of this work. PKNs are created by a painstaking process of literature curation, and generally describe all relevant regulatory interactions identified using a variety of experimental conditions and systems, such as specific cell types or tissues. Certain of these regulatory interactions may not occur in all biological contexts of interest, and their presence may dramatically change the dynamical behaviour of the resulting computational model, hindering the elucidation of the underlying mechanisms and reducing the usefulness of model predictions. Methods are therefore required to generate optimized contextual network models from generic PKNs. We developed a new approach to generate and optimize Boolean networks, based on a given PKN. Using a genetic algorithm, a model network is built as a sub-network of the PKN and trained against experimental data to reproduce the experimentally observed behaviour in terms of attractors and the transitions that occur between them under specific perturbations. The resulting model network is therefore contextualized to the experimental conditions and constitutes a dynamical Boolean model closer to the observed biological process used to train the model than the original PKN. Such a model can then be interrogated to simulate response under perturbation, to detect stable states and their properties, to get insights into the underlying mechanisms and to generate new testable hypotheses. Generic PKNs attempt to synthesize knowledge of all interactions occurring in a biological process of interest, irrespective of the specific biological context. This limits their usefulness as a basis for the development of context-specific, predictive dynamical Boolean models. The optimization method presented in this article produces specific, contextualized models from generic
Energy Technology Data Exchange (ETDEWEB)
Costa, Paulo Roberto, E-mail: pcosta@if.usp.b [Universidade de Sao Paulo (IFUSP), SP (Brazil). Inst. de Fisica. Dept. de Fisica Nuclear; Araujo, Ericky Caldas de Almeida [Fine Image Technology, Sao Paulo, SP (Brazil)
2010-08-15
This work consisted on the study and application of the FDK (Feldkamp- Davis-Kress) algorithm for tomographic image reconstruction using cone-beam geometry, resulting on the implementation of an adapted multi-slice computed tomography system. For the acquisition of the projections, a rotating platform coupled to a goniometer, an X-ray equipment and a digital image detector charge-coupled device type were used. The FDK algorithm was implemented on a computer with a Pentium{sup R} XEON{sup TM} 3.0 processor, which was used for the reconstruction process. Initially, the original FDK algorithm was applied considering only the ideal physical conditions in the measurement process. Then some artifacts corrections related to the projections measurement process were incorporated. The implemented MSCT system was calibrated. A specially designed and manufactured object with a known linear attenuation coefficient distribution ({mu}(r)) was used for this purpose. Finally, the implemented MSCT system was used for multi-slice tomographic reconstruction of an inhomogeneous object, whose distribution {mu}(r) was unknown. Some aspects of the reconstructed images were analyzed to assess the robustness and reproducibility of the system. During the system calibration, a linear relationship between CT number and linear attenuation coefficients of materials was verified, which validate the application of the implemented multi-slice tomographic system for the characterization of linear attenuation coefficients of distinct several objects. (author)
Smarda, Magdalini; Efstathopoulos, Efstathios; Mazioti, Argyro; Kordolaimi, Sofia; Ploussi, Agapi; Priftis, Konstantinos; Kelekis, Nikolaos; Alexopoulou, Efthymia
2016-08-01
High radiosensitivity of children undergoing repetitive computed tomography examinations necessitates the use of iterative reconstruction algorithms in order to achieve a significant radiation dose reduction. The goal of this study is to compare the iDose iterative reconstruction algorithm with filtered backprojection in terms of radiation exposure and image quality in 33 chest high-resolution computed tomography examinations performed in young children with chronic bronchitis. Fourteen patients were scanned using the filtered backprojection protocol while 19 patients using the iDose protocol and reduced milliampere-seconds, both on a 64-detector row computed tomography scanner. The iDose group images were reconstructed with different iDose levels (2, 4, and 6). Radiation exposure quantities were estimated, while subjective and objective image qualities were evaluated. Unpaired t tests were used for data statistical analysis. The iDose application allowed significant effective dose reduction (about 80%). Subjective image quality evaluation showed satisfactory results even with iDose level 2, whereas it approached excellent image with iDose level 6. Subjective image noise was comparable between the 2 groups with the use of iDose level 4, while objective noise was comparable between filtered backprojection and iterative reconstruction level 6 images. The iDose algorithm use in pediatric chest high-resolution computed tomography reduces radiation exposure without compromising image quality. Further evaluation with iterative reconstruction algorithms is needed in order to establish high-resolution computed tomography as the gold standard low-dose method for children suffering from chronic lung diseases. Copyright © 2016 Canadian Association of Radiologists. Published by Elsevier Inc. All rights reserved.
Directory of Open Access Journals (Sweden)
V. Sakthivel
2015-12-01
Full Text Available The design of low complexity sharp transition width Modified Discrete Fourier Transform (MDFT filter bank with perfect reconstruction (PR is proposed in this work. The current trends in technology require high data rates and speedy processing along with reduced power consumption, implementation complexity and chip area. Filters with sharp transition width are required for various applications in wireless communication. Frequency response masking (FRM technique is used to reduce the implementation complexity of sharp MDFT filter banks with PR. Further, to reduce the implementation complexity, the continuous coefficients of the filters in the MDFT filter banks are represented in discrete space using canonic signed digit (CSD. The multipliers in the filters are replaced by shifters and adders. The number of non-zero bits is reduced in the conversion process to minimize the number of adders and shifters required for the filter implementation. Hence the performances of the MDFT filter bank with PR may degrade. In this work, the performances of the MDFT filter banks with PR are improved using a hybrid Harmony-Gravitational search algorithm.
Directory of Open Access Journals (Sweden)
Liangtian He
2014-01-01
Full Text Available We propose a new effective algorithm for recovering a group sparse signal from very limited observations or measured data. As we know that a better reconstruction quality can be achieved when encoding more structural information besides sparsity, the commonly employed l2,1-regularization incorporating the prior grouping information has a better performance than the plain l1-regularized models as expected. In this paper we make a further use of the prior grouping information as well as possibly other prior information by considering a weighted l2,1 model. Specifically, we propose a multistage convex relaxation procedure to alternatively estimate weights and solve the resulted weighted problem. The procedure of estimating weights makes better use of the prior grouping information and is implemented based on the iterative support detection (Wang and Yin, 2010. Comprehensive numerical experiments show that our approach brings significant recovery enhancements compared with the plain l2,1 model, solved via the alternating direction method (ADM (Deng et al., 2013, either in noiseless or in noisy environments.
Kirchengast, Gottfried; Li, Ying; Scherllin-Pirscher, Barbara; Schwärz, Marc; Schwarz, Jakob; Nielsen, Johannes K.
2017-04-01
The GNSS radio occultation (RO) technique is an important remote sensing technique for obtaining thermodynamic profiles of temperature, humidity, and pressure in the Earth's troposphere. However, due to refraction effects of both dry ambient air and water vapor in the troposphere, retrieval of accurate thermodynamic profiles at these lower altitudes is challenging and requires suitable background information in addition to the RO refractivity information. Here we introduce a new moist air retrieval algorithm aiming to improve the quality and robustness of retrieving temperature, humidity and pressure profiles in moist air tropospheric conditions. The new algorithm consists of four steps: (1) use of prescribed specific humidity and its uncertainty to retrieve temperature and its associated uncertainty; (2) use of prescribed temperature and its uncertainty to retrieve specific humidity and its associated uncertainty; (3) use of the previous results to estimate final temperature and specific humidity profiles through optimal estimation; (4) determination of air pressure and density profiles from the results obtained before. The new algorithm does not require elaborated matrix inversions which are otherwise widely used in 1D-Var retrieval algorithms, and it allows a transparent uncertainty propagation, whereby the uncertainties of prescribed variables are dynamically estimated accounting for their spatial and temporal variations. Estimated random uncertainties are calculated by constructing error covariance matrices from co-located ECMWF short-range forecast and corresponding analysis profiles. Systematic uncertainties are estimated by empirical modeling. The influence of regarding or disregarding vertical error correlations is quantified. The new scheme is implemented with static input uncertainty profiles in WEGC's current OPSv5.6 processing system and with full scope in WEGC's next-generation system, the Reference Occultation Processing System (rOPS). Results from
Marin, Daniele; Mileto, Achille; Gupta, Rajan T; Ho, Lisa M; Allen, Brian C; Choudhury, Kingshuk Roy; Nelson, Rendon C
2015-10-01
To prospectively evaluate whether clinical experience with an adaptive statistical iterative reconstruction algorithm (ASiR) has an effect on radiologists' diagnostic performance and confidence for the diagnosis of hypervascular liver tumors, as well as on their subjective perception of image quality. Forty patients, having 65 hypervascular liver tumors, underwent contrast-enhanced MDCT during the hepatic arterial phase. Image datasets were reconstructed with filtered backprojection algorithm and ASiR (20%, 40%, 60%, and 80% blending). During two reading sessions, performed before and after a three-year period of clinical experience with ASiR, three readers assessed datasets for lesion detection, likelihood of malignancy, and image quality. For all reconstruction algorithms, there was no significant change in readers' diagnostic accuracy and sensitivity for the detection of liver lesions, between the two reading sessions. However, a 60% ASiR dataset yielded a significant improvement in specificity, lesion conspicuity, and confidence for lesion likelihood of malignancy during the second reading session (P ASiR dataset resulted in significant improvement in readers' perception of image quality during the second reading session (P ASiR algorithm may improve radiologists' diagnostic performance for the diagnosis of hypervascular liver tumors, as well as their perception of image quality.
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Shieh, Chun-Chien [Radiation Physics Laboratory, Sydney Medical School, University of Sydney, NSW 2006, Australia and Institute of Medical Physics, School of Physics, University of Sydney, NSW 2006 (Australia); Kipritidis, John; O’Brien, Ricky T.; Keall, Paul J., E-mail: paul.keall@sydney.edu.au [Radiation Physics Laboratory, Sydney Medical School, University of Sydney, NSW 2006 (Australia); Kuncic, Zdenka [Institute of Medical Physics, School of Physics, University of Sydney, NSW 2006 (Australia)
2014-04-15
Purpose: Respiratory signal, binning method, and reconstruction algorithm are three major controllable factors affecting image quality in thoracic 4D cone-beam CT (4D-CBCT), which is widely used in image guided radiotherapy (IGRT). Previous studies have investigated each of these factors individually, but no integrated sensitivity analysis has been performed. In addition, projection angular spacing is also a key factor in reconstruction, but how it affects image quality is not obvious. An investigation of the impacts of these four factors on image quality can help determine the most effective strategy in improving 4D-CBCT for IGRT. Methods: Fourteen 4D-CBCT patient projection datasets with various respiratory motion features were reconstructed with the following controllable factors: (i) respiratory signal (real-time position management, projection image intensity analysis, or fiducial marker tracking), (ii) binning method (phase, displacement, or equal-projection-density displacement binning), and (iii) reconstruction algorithm [Feldkamp–Davis–Kress (FDK), McKinnon–Bates (MKB), or adaptive-steepest-descent projection-onto-convex-sets (ASD-POCS)]. The image quality was quantified using signal-to-noise ratio (SNR), contrast-to-noise ratio, and edge-response width in order to assess noise/streaking and blur. The SNR values were also analyzed with respect to the maximum, mean, and root-mean-squared-error (RMSE) projection angular spacing to investigate how projection angular spacing affects image quality. Results: The choice of respiratory signals was found to have no significant impact on image quality. Displacement-based binning was found to be less prone to motion artifacts compared to phase binning in more than half of the cases, but was shown to suffer from large interbin image quality variation and large projection angular gaps. Both MKB and ASD-POCS resulted in noticeably improved image quality almost 100% of the time relative to FDK. In addition, SNR
Zhou, Zhiguo; Chen, Haixi; Wei, Wei; Zhou, Shanghui; Xu, Jingbo; Wang, Xifu; Wang, Qingguo; Zhang, Guixiang; Zhang, Zhuoli; Zheng, Linfeng
2016-01-01
The purpose of this study was to evaluate the image quality and radiation dose in computed tomography urography (CTU) images acquired with a low kilovoltage peak (kVp) in combination with an adaptive statistical iterative reconstruction (ASiR) algorithm. A total of 45 subjects (18 women, 27 men) who underwent CTU with kV assist software for automatic selection of the optimal kVp were included and divided into two groups (A and B) based on the kVp and image reconstruction algorithm: group A consisted of patients who underwent CTU with a 80 or 100 kVp and whose images were reconstructed with the 50% ASiR algorithm (n=32); group B consisted of patients who underwent CTU with a 120 kVp and whose images were reconstructed with the filtered back projection (FBP) algorithm (n=13). The images were separately reconstructed with volume rendering (VR) and maximum intensity projection (MIP). Finally, the image quality was evaluated using an image score, CT attenuation, image noise, the contrast-to-noise ratio (CNR) of the renal pelvis-to-abdominal visceral fat and the signal-to-noise ratio (SNR) of the renal pelvis. The radiation dose was assessed using volume CT dose index (CTDIvol), dose-length product (DLP) and effective dose (ED). For groups A and B, the subjective image scores for the VR reconstruction images were 3.9±0.4 and 3.8±0.4, respectively, while those for the MIP reconstruction images were 3.8±0.4 and 3.6±0.6, respectively. No significant difference was found (p>0.05) between the two groups' image scores for either the VR or MIP reconstruction images. Additionally, the inter-reviewer image scores did not significantly differ (p>0.05). The mean attenuation of the bilateral renal pelvis in group A was significantly higher than that in group B (271.4±57.6 vs. 221.8±35.3 HU, preconstruction exhibit sufficient image quality and facilitate up to a 44% radiation dose reduction.
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Fernandez Marron, J. L.; Alberdi Primicia, J.; Barcala Riveira, J. M.
2007-12-28
The Electrical Capacitance Tomography (ECT) has not obtained a good development in order to be used at industrial level. That is due first to difficulties in the measurement of very little capacitances (in the range of femto farads) and second to the problem of reconstruction on- line of the images. This problem is due also to the small numbers of electrodes (maximum 16), that made the usual algorithms of reconstruction has many errors. In this work it is described a new purely geometrical method that could be used for this purpose. (Author) 4 refs.
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Woods, K; DiCostanzo, D; Gupta, N [Ohio State University Columbus, OH (United States)
2016-06-15
Purpose: To test the efficacy of a retrospective metal artifact reduction (MAR) reconstruction algorithm for a commercial computed tomography (CT) scanner for radiation therapy purposes. Methods: High Z geometric integrity and artifact reduction analysis was performed with three phantoms using General Electric’s (GE) Discovery CT. The three phantoms included: a Computerized Imaging Reference Systems (CIRS) electron density phantom (Model 062) with a 6.5 mm diameter titanium rod insert, a custom spine phantom using Synthes Spine hardware submerged in water, and a dental phantom with various high Z fillings submerged in water. Each phantom was reconstructed using MAR and compared against the original scan. Furthermore, each scenario was tested using standard and extended Hounsfield Unit (HU) ranges. High Z geometric integrity was performed using the CIRS phantom, while the artifact reduction was performed using all three phantoms. Results: Geometric integrity of the 6.5 mm diameter rod was slightly overestimated for non-MAR scans for both standard and extended HU. With MAR reconstruction, the rod was underestimated for both standard and extended HU. For artifact reduction, the mean and standard deviation was compared in a volume of interest (VOI) in the surrounding material (water and water equivalent material, ∼0HU). Overall, the mean value of the VOI was closer to 0 HU for the MAR reconstruction compared to the non-MAR scan for most phantoms. Additionally, the standard deviations for all phantoms were greatly reduced using MAR reconstruction. Conclusion: GE’s MAR reconstruction algorithm improves image quality with the presence of high Z material with minimal degradation of its geometric integrity. High Z delineation can be carried out with proper contouring techniques. The effects of beam hardening artifacts are greatly reduced with MAR reconstruction. Tissue corrections due to these artifacts can be eliminated for simple high Z geometries and greatly
Thomas, L.; Tremblais, B.; David, L.
2014-03-01
Optimization of multiplicative algebraic reconstruction technique (MART), simultaneous MART and block iterative MART reconstruction techniques was carried out on synthetic and experimental data. Different criteria were defined to improve the preprocessing of the initial images. Knowledge of how each reconstruction parameter influences the quality of particle volume reconstruction and computing time is the key in Tomo-PIV. These criteria were applied to a real case, a jet in cross flow, and were validated.
Du, Yi; Wang, Xiangang; Xiang, Xincheng; Wei, Zhouping
2016-12-21
Optical computed tomography (optical-CT) is a high-resolution, fast, and easily accessible readout modality for gel dosimeters. This paper evaluates a hybrid iterative image reconstruction algorithm for optical-CT gel dosimeter imaging, namely, the simultaneous algebraic reconstruction technique (SART) integrated with ordered subsets (OS) iteration and total variation (TV) minimization regularization. The mathematical theory and implementation workflow of the algorithm are detailed. Experiments on two different optical-CT scanners were performed for cross-platform validation. For algorithm evaluation, the iterative convergence is first shown, and peak-to-noise-ratio (PNR) and contrast-to-noise ratio (CNR) results are given with the cone-beam filtered backprojection (FDK) algorithm and the FDK results followed by median filtering (mFDK) as reference. The effect on spatial gradients and reconstruction artefacts is also investigated. The PNR curve illustrates that the results of SART + OS + TV finally converges to that of FDK but with less noise, which implies that the dose-OD calibration method for FDK is also applicable to the proposed algorithm. The CNR in selected regions-of-interest (ROIs) of SART + OS + TV results is almost double that of FDK and 50% higher than that of mFDK. The artefacts in SART + OS + TV results are still visible, but have been much suppressed with little spatial gradient loss. Based on the assessment, we can conclude that this hybrid SART + OS + TV algorithm outperforms both FDK and mFDK in denoising, preserving spatial dose gradients and reducing artefacts, and its effectiveness and efficiency are platform independent.
Du, Yi; Wang, Xiangang; Xiang, Xincheng; Wei, Zhouping
2016-12-01
Optical computed tomography (optical-CT) is a high-resolution, fast, and easily accessible readout modality for gel dosimeters. This paper evaluates a hybrid iterative image reconstruction algorithm for optical-CT gel dosimeter imaging, namely, the simultaneous algebraic reconstruction technique (SART) integrated with ordered subsets (OS) iteration and total variation (TV) minimization regularization. The mathematical theory and implementation workflow of the algorithm are detailed. Experiments on two different optical-CT scanners were performed for cross-platform validation. For algorithm evaluation, the iterative convergence is first shown, and peak-to-noise-ratio (PNR) and contrast-to-noise ratio (CNR) results are given with the cone-beam filtered backprojection (FDK) algorithm and the FDK results followed by median filtering (mFDK) as reference. The effect on spatial gradients and reconstruction artefacts is also investigated. The PNR curve illustrates that the results of SART + OS + TV finally converges to that of FDK but with less noise, which implies that the dose-OD calibration method for FDK is also applicable to the proposed algorithm. The CNR in selected regions-of-interest (ROIs) of SART + OS + TV results is almost double that of FDK and 50% higher than that of mFDK. The artefacts in SART + OS + TV results are still visible, but have been much suppressed with little spatial gradient loss. Based on the assessment, we can conclude that this hybrid SART + OS + TV algorithm outperforms both FDK and mFDK in denoising, preserving spatial dose gradients and reducing artefacts, and its effectiveness and efficiency are platform independent.
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Littrup, P J; Duric, N; Azevedo, S; Chambers, D; Candy, J V; Johnson, S; Auner, G; Rather, J; Holsapple, E T
2001-09-07
processing, but the operator dependent nature of using a moveable transducer head remains a significant problem for thorough coverage of the entire breast. We have therefore undertaken the development of a whole breast (i.e., including auxiliary tail) system, with improved resolution and tissue characterization abilities. The extensive ultrasound physics considerations, engineering, materials process development and subsequent algorithm reconstruction are beyond the scope of this initial paper. The proprietary nature of these processes will be forthcoming as the intellectual property is fully secured. We will focus here on the imaging outcomes as they apply to eventual expansion into clinical use.
Albert, A; André, M; Anghinolfi, M; Anton, G; Ardid, M; Aubert, J-J; Avgitas, T; Baret, B; Barrios-Martí, J; Basa, S; Bertin, V; Biagi, S; Bormuth, R; Bourret, S; Bouwhuis, M C; Bruijn, R; Brunner, J; Busto, J; Capone, A; Caramete, L; Carr, J; Celli, S; Chiarusi, T; Circella, M; Coelho, J A B; Coleiro, A; Coniglione, R; Costantini, H; Coyle, P; Creusot, A; Deschamps, A; De Bonis, G; Distefano, C; Di Palma, I; Domi, A; Donzaud, C; Dornic, D; Drouhin, D; Eberl, T; El Bojaddaini, I; Elsässer, D; Enzenhöfer, A; Felis, I; Folger, F; Fusco, L A; Galatà, S; Gay, P; Giordano, V; Glotin, H; Grégoire, T; Gracia Ruiz, R; Graf, K; Hallmann, S; van Haren, H; Heijboer, A J; Hello, Y; Hernández-Rey, J J; Hößl, J; Hofestädt, J; Hugon, C; Illuminati, G; James, C W; de Jong, M; Jongen, M; Kadler, M; Kalekin, O; Katz, U; Kießling, D; Kouchner, A; Kreter, M; Kreykenbohm, I; Kulikovskiy, V; Lachaud, C; Lahmann, R; Lefèvre, D; Leonora, E; Lotze, M; Loucatos, S; Marcelin, M; Margiotta, A; Marinelli, A; Martínez-Mora, J A; Mele, R; Melis, K; Michael, T; Migliozzi, P; Moussa, A; Nezri, E; Organokov, M; Păvălaş, G E; Pellegrino, C; Perrina, C; Piattelli, P; Popa, V; Pradier, T; Quinn, L; Racca, C; Riccobene, G; Sánchez-Losa, A; Saldaña, M; Salvadori, I; Samtleben, D F E; Sanguineti, M; Sapienza, P; Schüssler, F; Sieger, C; Spurio, M; Stolarczyk, Th; Taiuti, M; Tayalati, Y; Trovato, A; Turpin, D; Tönnis, C; Vallage, B; Van Elewyck, V; Versari, F; Vivolo, D; Vizzoca, A; Wilms, J; Zornoza, J D; Zúñiga, J
2017-01-01
A novel algorithm to reconstruct neutrino-induced particle showers within the ANTARES neutrino telescope is presented. The method achieves a median angular resolution of [Formula: see text] for shower energies below 100 TeV. Applying this algorithm to 6 years of data taken with the ANTARES detector, 8 events with reconstructed shower energies above 10 TeV are observed. This is consistent with the expectation of about 5 events from atmospheric backgrounds, but also compatible with diffuse astrophysical flux measurements by the IceCube collaboration, from which 2-4 additional events are expected. A [Formula: see text] C.L. upper limit on the diffuse astrophysical neutrino flux with a value per neutrino flavour of [Formula: see text] is set, applicable to the energy range from 23 TeV to 7.8 PeV, assuming an unbroken [Formula: see text] spectrum and neutrino flavour equipartition at Earth.
Luo, Zhen; Ma, Yingjin; Liu, Chungen; Ma, Haibo
2017-10-10
We improve the methodology to construct a complete active space-configuration interaction (CAS-CI) expansion for density-matrix renormalization group (DMRG) wave functions using a matrix-product state representation, inspired by the sampling-reconstructed CAS [SR-CAS; Boguslawski , K. ; J. Chem. Phys. 2011 , 134 , 224101 ] algorithm. In our scheme, the genetic algorithm, in which the "crossover" and "mutation" processes can be optimized based on quantum information theory, is employed when reconstructing a CAS-CI-type wave function in the Hilbert space. Analysis of results for ground and excited state wave functions of conjugated molecules, transition metal compounds, and a lanthanide complex illustrate that our scheme is very efficient for searching the most important CI expansions in large active spaces.
Thresher: an improved algorithm for peak height thresholding of microbial community profiles.
Starke, Verena; Steele, Andrew
2014-11-15
This article presents Thresher, an improved technique for finding peak height thresholds for automated rRNA intergenic spacer analysis (ARISA) profiles. We argue that thresholds must be sample dependent, taking community richness into account. In most previous fragment analyses, a common threshold is applied to all samples simultaneously, ignoring richness variations among samples and thereby compromising cross-sample comparison. Our technique solves this problem, and at the same time provides a robust method for outlier rejection, selecting for removal any replicate pairs that are not valid replicates. Thresholds are calculated individually for each replicate in a pair, and separately for each sample. The thresholds are selected to be the ones that minimize the dissimilarity between the replicates after thresholding. If a choice of threshold results in the two replicates in a pair failing a quantitative test of similarity, either that threshold or that sample must be rejected. We compare thresholded ARISA results with sequencing results, and demonstrate that the Thresher algorithm outperforms conventional thresholding techniques. The software is implemented in R, and the code is available at http://verenastarke.wordpress.com or by contacting the author. vstarke@ciw.edu or http://verenastarke.wordpress.com Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.
Gavrielides, Marios A.; DeFilippo, Gino; Berman, Benjamin P.; Li, Qin; Petrick, Nicholas; Schultz, Kurt; Siegelman, Jenifer
2017-03-01
Computed tomography is primarily the modality of choice to assess stability of nonsolid pulmonary nodules (sometimes referred to as ground-glass opacity) for three or more years, with change in size being the primary factor to monitor. Since volume extracted from CT is being examined as a quantitative biomarker of lung nodule size, it is important to examine factors affecting the performance of volumetric CT for this task. More specifically, the effect of reconstruction algorithms and measurement method in the context of low-dose CT protocols has been an under-examined area of research. In this phantom study we assessed volumetric CT with two different measurement methods (model-based and segmentation-based) for nodules with radiodensities of both nonsolid (-800HU and -630HU) and solid (-10HU) nodules, sizes of 5mm and 10mm, and two different shapes (spherical and spiculated). Imaging protocols included CTDIvol typical of screening (1.7mGy) and sub-screening (0.6mGy) scans and different types of reconstruction algorithms across three scanners. Results showed that radio-density was the factor contributing most to overall error based on ANOVA. The choice of reconstruction algorithm or measurement method did not affect substantially the accuracy of measurements; however, measurement method affected repeatability with repeatability coefficients ranging from around 3-5% for the model-based estimator to around 20-30% across reconstruction algorithms for the segmentation-based method. The findings of the study can be valuable toward developing standardized protocols and performance claims for nonsolid nodules.
Park, Chul Hwan; Lee, Joohee; Oh, Chisuk; Han, Kyung Hwa; Kim, Tae Hoon
2015-12-01
We evaluated the feasibility of sub-millisievert (mSv) coronary CT angiography (CCTA) using low tube voltage, prospective ECG gating, and a knowledge-based iterative model reconstruction algorithm. Twenty-four non-obese healthy subjects (M:F 13:11; mean age 50.2 ± 7.8 years) were enrolled. Three sets of CT images were reconstructed using three different reconstruction methods: filtered back projection (FBP), iterative reconstruction (IR), and knowledge-based iterative model reconstruction (IMR). The scanning parameters were as follows: step-and-shoot axial scanning, 80 kVp, and 200 mAs. On the three sets of CT images, the attenuation and image noise values were measured at the aortic root. The signal-to-noise ratio (SNR) and the contrast-to-noise ratio (CNR) were calculated at the proximal right coronary artery and the left main coronary artery. The qualitative image quality of the CCTA with IMR was assessed using a 4-point grading scale (grade 1, poor; grade 4, excellent). The mean radiation dose of the CCTA was 0.89 ± 0.09 mSv. The attenuation values with IMR were not different from those of other reconstruction methods. The image noise with IMR was significantly lower than with IR and FBP. Compared to FBP, the noise reduction rate of IMR was 69 %. The SNR and CNR of CCTA with IMR were significantly higher than with FBP or IR. On the qualitative analysis with IMR, all included segments were diagnostic (grades 2, 3, and 4), and the mean image quality score was 3.6 ± 0.6. In conclusion, CCTA with low tube voltage, prospective ECG gating, and an IMR algorithm might be a feasible method that allows for sub-millisievert radiation doses and good image quality when used with non-obese subjects.
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Nakamoto, Atsushi; Tanaka, Yoshikazu; Juri, Hiroshi; Nakai, Go; Narumi, Yoshifumi [Osaka Medical College, Department of Radiology, Takatsuki, Osaka (Japan); Yoshikawa, Shushi [Osaka Medical College Hospital, Central Radiology Department, Takatsuki, Osaka (Japan)
2017-07-15
To investigate the diagnostic performance of reduced-dose CT with a hybrid iterative reconstruction (IR) algorithm for the detection of hypervascular liver lesions. Thirty liver phantoms with or without simulated hypervascular lesions were scanned with a 320-slice CT scanner with control-dose (40 mAs) and reduced-dose (30 and 20 mAs) settings. Control-dose images were reconstructed with filtered back projection (FBP), and reduced-dose images were reconstructed with FBP and a hybrid IR algorithm. Objective image noise and the lesion to liver contrast-to-noise ratio (CNR) were evaluated quantitatively. Images were interpreted independently by 2 blinded radiologists, and jackknife alternative free-response receiver-operating characteristic (JAFROC) analysis was performed. Hybrid IR images with reduced-dose settings (both 30 and 20 mAs) yielded significantly lower objective image noise and higher CNR than control-dose FBP images (P <.05). However, hybrid IR images with reduced-dose settings had lower JAFROC1 figure of merit than control-dose FBP images, although only the difference between 20 mAs images and control-dose FBP images was significant for both readers (P <.01). An aggressive reduction of the radiation dose would impair the detectability of hypervascular liver lesions, although objective image noise and CNR would be preserved by a hybrid IR algorithm. (orig.)
Application of profiled flooring during reconstruction and repair of small bridges
Directory of Open Access Journals (Sweden)
Ye.S. Krasnova
2011-12-01
Full Text Available The review of plate span structures constructions is carried out. The perspectiveness of application of plate span structures with outer reinforcement in the form of profiled steel sheets is paid attention to. The distributive capacity of plate span structures with application of profiled steel sheets is investigated.
Liu, Y.; Jian, W.; Wang, J. Y.; Hofmann, S.; Shimizu, K.
2015-03-01
High-resolution depth profiles of a thiourea (CH4N2S) molecular monolayer on a copper substrate obtained by radio frequency glow discharge optical emission spectroscopy (rf-GDOES) are quantified by the Mixing-Roughness-Information depth (MRI) model. Based on the molecular structure of the self-assembled thiourea layer, the measured intensity-sputtering time profiles of N, S, C and Cu are fitted to the MRI model results with an appropriate depth resolution function. The sputtering rate is determined accordingly, using two different approaches based on constant sputtering rate and on composition dependent sputtering rate. While the first approach requires an additional background for a fairly acceptable solution, the approach using a newly developed multielement dependent sputtering rate results in a complete and consistent reconstruction of all the measured elemental depth profiles. It is demonstrated that for depth profiling of the first few monolayers with rf-GDOES, the depth resolution Δz can be as low as 0.5 nm, which is of the order of the theoretical limit.
Shin, Cheong-Il; Kim, Se Hyung; Lee, Eun Sun; Lee, Dong Ho; Hwang, Eui Jin; Chung, Se-Yeong; Lee, Jeong Min; Han, Joon Koo; Choi, Byung Ihn
2014-12-01
To analyze the effect of a decrease in computed tomographic (CT) colonographic voltage, from 100 and 120 kVp to 80 kVp and reconstructed with filtered back projection ( FBP filtered back projection ), on radiation dose, image noise, and diagnostic performance in anthropomorphic phantoms and to assess the effect of iterative reconstruction ( IR iterative reconstruction ) algorithms on radiologists' performance for 80-kVp CT colonography. Seven colon phantoms with 68 simulated polyps (≥6 mm) were scanned at three peak voltage settings (80, 100, 120 kVp) and 10 mAs. Images were reconstructed by using FBP filtered back projection , hybrid statistic-based IR iterative reconstruction , and knowledge-based IR iterative reconstruction algorithms. Effective radiation dose, image noise, and per-polyp sensitivity were recorded and compared by two reviewers with Friedman test, repeated measures analysis of variance, and McNemar test. Median size-specific dose estimate and effective radiation dose of 80-kVp CT colonography was 0.231 mGy and 0.167 mSv, respectively, which was lower than with 100- and 120-kVp CT colonography, with significant difference between 80 and 120 kVp (P = .0005). Image noise (202.0 HU) at 80-kVp FBP filtered back projection CT colonography was significantly higher than at 100-kVp FBP filtered back projection (139.1 HU) and 120-kVp FBP filtered back projection (120.4 HU) (P iterative reconstruction , image noise at 80 kVp decreased significantly (52.8% [106.7 HU of 202.0 HU]) compared with that at 80-kVp FBP filtered back projection (P iterative reconstruction remained significantly lower than at 100-kVp statistic-based IR iterative reconstruction (reviewer 1, 95.6% [65 of 68]; reviewer 2, 86.8% [59 of 68]) (P = .001) and 120-kVp statistic-based IR iterative reconstruction (reviewer 1, 98.5% [67 of 68]; reviewer 2, 89.7% [61 of 68]) (P iterative reconstruction , per-polyp sensitivity at 80 kVp was improved to 98.5% (67 of 68) and 94.1% (64 of 68), not
A simple algorithm for longitudinal phase space tomography
Hancock, S
1997-01-01
Tomography is now a very broad topic with a wealth of different algorithms for the reconstruction of both qualitative and quantitative images. One of the simplest algorithms has been modified to take into account the non-linearity of large-amplitude synchrotron motion. This permits the accurate reconstruction of longitudinal phase space density from one-dimensional bunch profile data. The method may be further extended to treat, for example, multi-harmonic systems and self-fields.
Ott, Julien G.; Becce, Fabio; Monnin, Pascal; Schmidt, Sabine; Bochud, François O.; Verdun, Francis R.
2014-08-01
The state of the art to describe image quality in medical imaging is to assess the performance of an observer conducting a task of clinical interest. This can be done by using a model observer leading to a figure of merit such as the signal-to-noise ratio (SNR). Using the non-prewhitening (NPW) model observer, we objectively characterised the evolution of its figure of merit in various acquisition conditions. The NPW model observer usually requires the use of the modulation transfer function (MTF) as well as noise power spectra. However, although the computation of the MTF poses no problem when dealing with the traditional filtered back-projection (FBP) algorithm, this is not the case when using iterative reconstruction (IR) algorithms, such as adaptive statistical iterative reconstruction (ASIR) or model-based iterative reconstruction (MBIR). Given that the target transfer function (TTF) had already shown it could accurately express the system resolution even with non-linear algorithms, we decided to tune the NPW model observer, replacing the standard MTF by the TTF. It was estimated using a custom-made phantom containing cylindrical inserts surrounded by water. The contrast differences between the inserts and water were plotted for each acquisition condition. Then, mathematical transformations were performed leading to the TTF. As expected, the first results showed a dependency of the image contrast and noise levels on the TTF for both ASIR and MBIR. Moreover, FBP also proved to be dependent of the contrast and noise when using the lung kernel. Those results were then introduced in the NPW model observer. We observed an enhancement of SNR every time we switched from FBP to ASIR to MBIR. IR algorithms greatly improve image quality, especially in low-dose conditions. Based on our results, the use of MBIR could lead to further dose reduction in several clinical applications.
Energy Technology Data Exchange (ETDEWEB)
Weir, V [Baylor Scott and White Healthcare System, Dallas, TX (United States); Zhang, J [University of Kentucky, Lexington, KY (United States)
2016-06-15
Purpose: Iterative reconstruction (IR) algorithms have been adopted by medical centers in the past several years. IR has a potential to substantially reduce patient dose while maintaining or improving image quality. This study characterizes dose reductions in clinical settings for CT examinations using IR. Methods: We retrospectively analyzed dose information from patients who underwent abdomen/pelvis CT examinations with and without contrast media in multiple locations of our Healthcare system. A total of 743 patients scanned with ASIR on 64 slice GE lightspeed VCTs at three sites, and 30 patients scanned with SAFIRE on a Siemens 128 slice Definition Flash in one site was retrieved. For comparison, patient data (n=291) from a GE scanner and patient data (n=61) from two Siemens scanners where filtered back-projection (FBP) was used was collected retrospectively. 30% and 10% ASIR, and SAFIRE Level 2 was used. CTDIvol, Dose-length-product (DLP), weight and height from all patients was recorded. Body mass index (BMI) was calculated accordingly. To convert CTDIvol to SSDE, AP and lateral dimensions at the mid-liver level was measured for each patient. Results: Compared with FBP, 30% ASIR reduces dose by 44.1% (SSDE: 12.19mGy vs. 21.83mGy), while 10% ASIR reduced dose by 20.6% (SSDE 17.32mGy vs. 21.83). Use of SAFIRE reduced dose by 61.4% (SSDE: 8.77mGy vs. 22.7mGy). The geometric mean for patients scanned with ASIR was larger than for patients scanned with FBP (geometric mean is 297.48 mmm vs. 284.76 mm). The same trend was observed for the Siemens scanner where SAFIRE was used (geometric mean: 316 mm with SAFIRE vs. 239 mm with FBP). Patient size differences suggest that further dose reduction is possible. Conclusion: Our data confirmed that in clinical practice IR can significantly reduce dose to patients who undergo CT examinations, while meeting diagnostic requirements for image quality.
Energy Technology Data Exchange (ETDEWEB)
Houy, P
1999-10-15
The aim of this work is to propose a real-time control of the current profile in order to achieve reproducible operating modes with improved energetic confinement in tokamaks. The determination of the profile is based on measurements given by interferometry and polarimetry diagnostics. Different ways to evaluate and improve the accuracy of these measurements are exposed. The position and the shape of a plasma are controlled by the poloidal system that forces them to cope with standard values. Gas or neutral ions or ice pellet or extra power injection are technical means used to control other plasma parameters. These controls are performed by servo-controlled loops. The poloidal system of Tore-supra is presented. The main obstacle to a reliable determination of the current profile is the fact that slightly different Faraday angles lead to very different profiles. The direct identification method that is exposed in this work, gives the profile that minimizes the square of the margin between measured and computed values. The different algorithms proposed to control current profiles on Tore-supra have been validated by using a plasma simulation. The code Cronos that solves the resistive diffusion equation of current has been used. (A.C.)
Aad, G.; Abdallah, Jalal; Abdinov, Ovsat; Abeloos, Baptiste; Aben, Rosemarie; Abolins, Maris; AbouZeid, Ossama; Abramowicz, Halina; Abreu, Henso; Abreu, Ricardo; Abulaiti, Yiming; Acharya, Bobby Samir; Adamczyk, Leszek; Adams, David; Adelman, Jahred; Adomeit, Stefanie; Adye, Tim; Affolder, Tony; Agatonovic-Jovin, Tatjana; Agricola, Johannes; Aguilar-Saavedra, Juan Antonio; Ahlen, Steven; Ahmadov, Faig; Aielli, Giulio; Akerstedt, Henrik; Åkesson, Torsten Paul Ake; Akimov, Andrei; Alberghi, Gian Luigi; Albert, Justin; Albrand, Solveig; Alconada Verzini, Maria Josefina; Aleksa, Martin; Aleksandrov, Igor; Alexa, Calin; Alexander, Gideon; Alexopoulos, Theodoros; Alhroob, Muhammad; Alimonti, Gianluca; Alio, Lion; Alison, John; Alkire, Steven Patrick; Allbrooke, Benedict; Allen, Benjamin William; Allport, Phillip; Aloisio, Alberto; Alonso, Alejandro; Alonso, Francisco; Alpigiani, Cristiano; Alvarez Gonzalez, Barbara; Άlvarez Piqueras, Damián; Alviggi, Mariagrazia; Amadio, Brian Thomas; Amako, Katsuya; Amaral Coutinho, Yara; Amelung, Christoph; Amidei, Dante; Amor Dos Santos, Susana Patricia; Amorim, Antonio; Amoroso, Simone; Amram, Nir; Amundsen, Glenn; Anastopoulos, Christos; Ancu, Lucian Stefan; Andari, Nansi; Andeen, Timothy; Anders, Christoph Falk; Anders, Gabriel; Anders, John Kenneth; Anderson, Kelby; Andreazza, Attilio; Andrei, George Victor; Angelidakis, Stylianos; Angelozzi, Ivan; Anger, Philipp; Angerami, Aaron; Anghinolfi, Francis; Anisenkov, Alexey; Anjos, Nuno; Annovi, Alberto; Antonelli, Mario; Antonov, Alexey; Antos, Jaroslav; Anulli, Fabio; Aoki, Masato; Aperio Bella, Ludovica; Arabidze, Giorgi; Arai, Yasuo; Araque, Juan Pedro; Arce, Ayana; Arduh, Francisco Anuar; Arguin, Jean-Francois; Argyropoulos, Spyridon; Arik, Metin; Armbruster, Aaron James; Arnaez, Olivier; Arnold, Hannah; Arratia, Miguel; Arslan, Ozan; Artamonov, Andrei; Artoni, Giacomo; Artz, Sebastian; Asai, Shoji; Asbah, Nedaa; Ashkenazi, Adi; Åsman, Barbro; Asquith, Lily; Assamagan, Ketevi; Astalos, Robert; Atkinson, Markus; Atlay, Naim Bora; Augsten, Kamil; Avolio, Giuseppe; Axen, Bradley; Ayoub, Mohamad Kassem; Azuelos, Georges; Baak, Max; Baas, Alessandra; Baca, Matthew John; Bachacou, Henri; Bachas, Konstantinos; Backes, Moritz; Backhaus, Malte; Bagiacchi, Paolo; Bagnaia, Paolo; Bai, Yu; Baines, John; Baker, Oliver Keith; Baldin, Evgenii; Balek, Petr; Balestri, Thomas; Balli, Fabrice; Balunas, William Keaton; Banas, Elzbieta; Banerjee, Swagato; Bannoura, Arwa A E; Barak, Liron; Barberio, Elisabetta Luigia; Barberis, Dario; Barbero, Marlon; Barillari, Teresa; Barklow, Timothy; Barlow, Nick; Barnes, Sarah Louise; Barnett, Bruce; Barnett, Michael; Barnovska, Zuzana; Baroncelli, Antonio; Barone, Gaetano; Barr, Alan; Barranco Navarro, Laura; Barreiro, Fernando; Barreiro Guimarães da Costa, João; Bartoldus, Rainer; Barton, Adam Edward; Bartos, Pavol; Basalaev, Artem; Bassalat, Ahmed; Basye, Austin; Bates, Richard; Batista, Santiago Juan; Batley, Richard; Battaglia, Marco; Bauce, Matteo; Bauer, Florian; Bawa, Harinder Singh; Beacham, James; Beattie, Michael David; Beau, Tristan; Beauchemin, Pierre-Hugues; Beccherle, Roberto; Bechtle, Philip; Beck, Hans~Peter; Becker, Kathrin; Becker, Maurice; Beckingham, Matthew; Becot, Cyril; Beddall, Andrew; Beddall, Ayda; Bednyakov, Vadim; Bedognetti, Matteo; Bee, Christopher; Beemster, Lars; Beermann, Thomas; Begel, Michael; Behr, Janna Katharina; Belanger-Champagne, Camille; Bella, Gideon; Bellagamba, Lorenzo; Bellerive, Alain; Bellomo, Massimiliano; Belotskiy, Konstantin; Beltramello, Olga; Benary, Odette; Benchekroun, Driss; Bender, Michael; Bendtz, Katarina; Benekos, Nektarios; Benhammou, Yan; Benhar Noccioli, Eleonora; Benitez Garcia, Jorge-Armando; Benjamin, Douglas; Bensinger, James; Bentvelsen, Stan; Beresford, Lydia; Beretta, Matteo; Berge, David; Bergeaas Kuutmann, Elin; Berger, Nicolas; Berghaus, Frank; Beringer, Jürg; Bernard, Clare; Bernard, Nathan Rogers; Bernius, Catrin; Bernlochner, Florian Urs; Berry, Tracey; Berta, Peter; Bertella, Claudia; 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Cantero, Josu; Cantrill, Robert; Cao, Tingting; Capeans Garrido, Maria Del Mar; Caprini, Irinel; Caprini, Mihai; Capua, Marcella; Caputo, Regina; Carbone, Ryne Michael; Cardarelli, Roberto; Cardillo, Fabio; Carli, Ina; Carli, Tancredi; Carlino, Gianpaolo; Carminati, Leonardo; Caron, Sascha; Carquin, Edson; Carrillo-Montoya, German D; Carter, Janet; Carvalho, João; Casadei, Diego; Casado, Maria Pilar; Casolino, Mirkoantonio; Casper, David William; Castaneda-Miranda, Elizabeth; Castelli, Angelantonio; Castillo Gimenez, Victoria; Castro, Nuno Filipe; Catinaccio, Andrea; Catmore, James; Cattai, Ariella; Caudron, Julien; Cavaliere, Viviana; Cavalli, Donatella; Cavalli-Sforza, Matteo; Cavasinni, Vincenzo; Ceradini, Filippo; Cerda Alberich, Leonor; Cerio, Benjamin; Santiago Cerqueira, Augusto; Cerri, Alessandro; Cerrito, Lucio; Cerutti, Fabio; Cerv, Matevz; Cervelli, Alberto; Cetin, Serkant Ali; Chafaq, Aziz; Chakraborty, Dhiman; Chan, Yat Long; Chang, Philip; Chapman, John Derek; Charlton, Dave; Chau, Chav Chhiv; Chavez Barajas, Carlos Alberto; Che, Siinn; Cheatham, Susan; Chegwidden, Andrew; Chekanov, Sergei; Chekulaev, Sergey; Chelkov, Gueorgui; Chelstowska, Magda Anna; Chen, Chunhui; Chen, Hucheng; Chen, Karen; Chen, Shenjian; Chen, Shion; Chen, Xin; Chen, Ye; Cheng, Hok Chuen; Cheng, Yangyang; Cheplakov, Alexander; Cheremushkina, Evgenia; Cherkaoui El Moursli, Rajaa; Chernyatin, Valeriy; Cheu, Elliott; Chevalier, Laurent; Chiarella, Vitaliano; Chiarelli, Giorgio; Chiodini, Gabriele; Chisholm, Andrew; Chislett, Rebecca Thalatta; Chitan, Adrian; Chizhov, Mihail; Choi, Kyungeon; Chouridou, Sofia; Chow, Bonnie Kar Bo; Christodoulou, Valentinos; Chromek-Burckhart, Doris; Chudoba, Jiri; Chuinard, Annabelle Julia; Chwastowski, Janusz; Chytka, Ladislav; Ciapetti, Guido; Ciftci, Abbas Kenan; Cinca, Diane; Cindro, Vladimir; Cioara, Irina Antonela; Ciocio, Alessandra; Cirotto, Francesco; Citron, Zvi Hirsh; Ciubancan, Mihai; Clark, Allan G; Clark, Brian Lee; Clark, Philip James; Clarke, Robert; Clement, Christophe; Coadou, Yann; Cobal, Marina; Coccaro, Andrea; Cochran, James H; Coffey, Laurel; Colasurdo, Luca; Cole, Brian; Cole, Stephen; Colijn, Auke-Pieter; Collot, Johann; Colombo, Tommaso; Compostella, Gabriele; Conde Muiño, Patricia; Coniavitis, Elias; Connell, Simon Henry; Connelly, Ian; Consorti, Valerio; Constantinescu, Serban; Conta, Claudio; Conti, Geraldine; Conventi, Francesco; Cooke, Mark; Cooper, Ben; Cooper-Sarkar, Amanda; Cornelissen, Thijs; Corradi, Massimo; Corriveau, Francois; Corso-Radu, Alina; Cortes-Gonzalez, Arely; Cortiana, Giorgio; Costa, Giuseppe; Costa, María José; Costanzo, Davide; Cottin, Giovanna; Cowan, Glen; Cox, Brian; Cranmer, Kyle; Crawley, Samuel Joseph; Cree, Graham; Crépé-Renaudin, Sabine; Crescioli, Francesco; Cribbs, Wayne Allen; Crispin Ortuzar, Mireia; Cristinziani, Markus; Croft, Vince; Crosetti, Giovanni; Cuhadar Donszelmann, Tulay; Cummings, Jane; Curatolo, Maria; Cúth, Jakub; Cuthbert, Cameron; Czirr, Hendrik; Czodrowski, Patrick; D'Auria, Saverio; D'Onofrio, Monica; Da Cunha Sargedas De Sousa, Mario Jose; Da Via, Cinzia; Dabrowski, Wladyslaw; Dafinca, Alexandru; Dai, Tiesheng; Dale, Orjan; Dallaire, Frederick; Dallapiccola, Carlo; Dam, Mogens; Dandoy, Jeffrey Rogers; Dang, Nguyen Phuong; Daniells, Andrew Christopher; Danninger, Matthias; Dano Hoffmann, Maria; Dao, Valerio; Darbo, Giovanni; Darmora, Smita; Dassoulas, James; Dattagupta, Aparajita; Davey, Will; David, Claire; Davidek, Tomas; Davies, Eleanor; Davies, Merlin; Davison, Peter; Davygora, Yuriy; Dawe, Edmund; Dawson, Ian; Daya-Ishmukhametova, Rozmin; De, Kaushik; de Asmundis, Riccardo; De Benedetti, Abraham; De Castro, Stefano; De Cecco, Sandro; De Groot, Nicolo; de Jong, Paul; De la Torre, Hector; De Lorenzi, Francesco; De Pedis, Daniele; De Salvo, Alessandro; De Sanctis, Umberto; De Santo, Antonella; De Vivie De Regie, Jean-Baptiste; Dearnaley, William James; Debbe, Ramiro; Debenedetti, Chiara; Dedovich, Dmitri; Deigaard, Ingrid; Del Peso, Jose; Del Prete, Tarcisio; Delgove, David; Deliot, Frederic; Delitzsch, Chris Malena; Deliyergiyev, Maksym; Dell'Acqua, Andrea; Dell'Asta, Lidia; Dell'Orso, Mauro; Della Pietra, Massimo; della Volpe, Domenico; Delmastro, Marco; Delsart, Pierre-Antoine; Deluca, Carolina; DeMarco, David; Demers, Sarah; Demichev, Mikhail; Demilly, Aurelien; Denisov, Sergey; Denysiuk, Denys; Derendarz, Dominik; Derkaoui, Jamal Eddine; Derue, Frederic; Dervan, Paul; Desch, Klaus Kurt; Deterre, Cecile; Dette, Karola; Deviveiros, Pier-Olivier; Dewhurst, Alastair; Dhaliwal, Saminder; Di Ciaccio, Anna; Di Ciaccio, Lucia; Di Donato, Camilla; Di Girolamo, Alessandro; Di Girolamo, Beniamino; Di Micco, Biagio; Di Nardo, Roberto; Di Simone, Andrea; Di Sipio, Riccardo; Di Valentino, David; Diaconu, Cristinel; Diamond, Miriam; Dias, Flavia; Diaz, Marco Aurelio; Diehl, Edward; Dietrich, Janet; Diglio, Sara; Dimitrievska, Aleksandra; Dingfelder, Jochen; Dita, Petre; Dita, Sanda; Dittus, Fridolin; Djama, Fares; Djobava, Tamar; Djuvsland, Julia Isabell; Barros do Vale, Maria Aline; 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Endo, Masaki; Ennis, Joseph Stanford; Erdmann, Johannes; Ereditato, Antonio; Ernis, Gunar; Ernst, Jesse; Ernst, Michael; Errede, Steven; Ertel, Eugen; Escalier, Marc; Esch, Hendrik; Escobar, Carlos; Esposito, Bellisario; Etienvre, Anne-Isabelle; Etzion, Erez; Evans, Hal; Ezhilov, Alexey; Fabbri, Laura; Facini, Gabriel; Fakhrutdinov, Rinat; Falciano, Speranza; Falla, Rebecca Jane; Faltova, Jana; Fang, Yaquan; Fanti, Marcello; Farbin, Amir; Farilla, Addolorata; Farina, Christian; Farooque, Trisha; Farrell, Steven; Farrington, Sinead; Farthouat, Philippe; Fassi, Farida; Fassnacht, Patrick; Fassouliotis, Dimitrios; Faucci Giannelli, Michele; Favareto, Andrea; Fayard, Louis; Fedin, Oleg; Fedorko, Wojciech; Feigl, Simon; Feligioni, Lorenzo; Feng, Cunfeng; Feng, Eric; Feng, Haolu; Fenyuk, Alexander; Feremenga, Last; Fernandez Martinez, Patricia; Fernandez Perez, Sonia; Ferrando, James; Ferrari, Arnaud; Ferrari, Pamela; Ferrari, Roberto; Ferreira de Lima, Danilo Enoque; Ferrer, Antonio; Ferrere, Didier; Ferretti, Claudio; Ferretto Parodi, Andrea; Fiedler, Frank; Filipčič, Andrej; Filipuzzi, Marco; Filthaut, Frank; Fincke-Keeler, Margret; Finelli, Kevin Daniel; Fiolhais, Miguel; Fiorini, Luca; Firan, Ana; Fischer, Adam; Fischer, Cora; Fischer, Julia; Fisher, Wade Cameron; Flaschel, Nils; Fleck, Ivor; Fleischmann, Philipp; Fletcher, Gareth Thomas; Fletcher, Gregory; Fletcher, Rob Roy MacGregor; Flick, Tobias; Floderus, Anders; Flores Castillo, Luis; Flowerdew, Michael; Forcolin, Giulio Tiziano; Formica, Andrea; Forti, Alessandra; Fournier, Daniel; Fox, Harald; Fracchia, Silvia; Francavilla, Paolo; Franchini, Matteo; Francis, David; Franconi, Laura; Franklin, Melissa; Frate, Meghan; Fraternali, Marco; Freeborn, David; Fressard-Batraneanu, Silvia; Friedrich, Felix; Froidevaux, Daniel; Frost, James; Fukunaga, Chikara; Fullana Torregrosa, Esteban; Fusayasu, Takahiro; Fuster, Juan; Gabaldon, Carolina; Gabizon, Ofir; Gabrielli, Alessandro; Gabrielli, Andrea; Gach, Grzegorz; Gadatsch, Stefan; Gadomski, Szymon; Gagliardi, Guido; Gagnon, Pauline; Galea, Cristina; Galhardo, Bruno; Gallas, Elizabeth; Gallop, Bruce; Gallus, Petr; Galster, Gorm Aske Gram Krohn; Gan, KK; Gao, Jun; Gao, Yanyan; Gao, Yongsheng; Garay Walls, Francisca; García, Carmen; García Navarro, José Enrique; Garcia-Sciveres, Maurice; Gardner, Robert; Garelli, Nicoletta; Garonne, Vincent; Gatti, Claudio; Gaudiello, Andrea; Gaudio, Gabriella; Gaur, Bakul; Gauthier, Lea; Gavrilenko, Igor; Gay, Colin; Gaycken, Goetz; Gazis, Evangelos; Gecse, Zoltan; Gee, Norman; Geich-Gimbel, Christoph; Geisler, Manuel Patrice; Gemme, Claudia; Genest, Marie-Hélène; Geng, Cong; Gentile, Simonetta; George, Simon; Gerbaudo, Davide; Gershon, Avi; Ghasemi, Sara; Ghazlane, Hamid; Giacobbe, Benedetto; Giagu, Stefano; Giannetti, Paola; Gibbard, Bruce; Gibson, Stephen; Gignac, Matthew; Gilchriese, Murdock; Gillam, Thomas; Gillberg, Dag; Gilles, Geoffrey; Gingrich, Douglas; Giokaris, Nikos; Giordani, MarioPaolo; Giorgi, Filippo Maria; Giorgi, Francesco Michelangelo; Giraud, Pierre-Francois; Giromini, Paolo; Giugni, Danilo; Giuliani, Claudia; Giulini, Maddalena; Gjelsten, Børge Kile; Gkaitatzis, Stamatios; Gkialas, Ioannis; Gkougkousis, Evangelos Leonidas; Gladilin, Leonid; Glasman, Claudia; Glatzer, Julian; Glaysher, Paul; Glazov, Alexandre; Goblirsch-Kolb, Maximilian; Goddard, Jack Robert; Godlewski, Jan; Goldfarb, Steven; Golling, Tobias; Golubkov, Dmitry; Gomes, Agostinho; Gonçalo, Ricardo; Goncalves Pinto Firmino Da Costa, Joao; Gonella, Laura; González de la Hoz, Santiago; Gonzalez Parra, Garoe; Gonzalez-Sevilla, Sergio; Goossens, Luc; Gorbounov, Petr Andreevich; Gordon, Howard; Gorelov, Igor; Gorini, Benedetto; Gorini, Edoardo; Gorišek, Andrej; Gornicki, Edward; Goshaw, Alfred; Gössling, Claus; Gostkin, Mikhail Ivanovitch; Goudet, Christophe Raymond; Goujdami, Driss; Goussiou, Anna; Govender, Nicolin; Gozani, Eitan; Graber, Lars; Grabowska-Bold, Iwona; Gradin, Per Olov Joakim; Grafström, Per; Gramling, Johanna; Gramstad, Eirik; Grancagnolo, Sergio; Gratchev, Vadim; Gray, Heather; Graziani, Enrico; Greenwood, Zeno Dixon; Grefe, Christian; Gregersen, Kristian; Gregor, Ingrid-Maria; Grenier, Philippe; Grevtsov, Kirill; Griffiths, Justin; Grillo, Alexander; Grimm, Kathryn; Grinstein, Sebastian; Gris, Philippe Luc Yves; Grivaz, Jean-Francois; Groh, Sabrina; Grohs, Johannes Philipp; Gross, Eilam; Grosse-Knetter, Joern; Grossi, Giulio Cornelio; Grout, Zara Jane; Guan, Liang; Guenther, Jaroslav; Guescini, Francesco; Guest, Daniel; Gueta, Orel; Guido, Elisa; Guillemin, Thibault; Guindon, Stefan; Gul, Umar; Gumpert, Christian; Guo, Jun; Guo, Yicheng; Gupta, Shaun; Gustavino, Giuliano; Gutierrez, Phillip; Gutierrez Ortiz, Nicolas Gilberto; Gutschow, Christian; Guyot, Claude; Gwenlan, Claire; Gwilliam, Carl; Haas, Andy; Haber, Carl; Hadavand, Haleh Khani; Haddad, Nacim; Hadef, Asma; Haefner, Petra; Hageböck, Stephan; Hajduk, Zbigniew; Hakobyan, Hrachya; Haleem, Mahsana; Haley, Joseph; Hall, David; Halladjian, Garabed; Hallewell, Gregory David; Hamacher, Klaus; Hamal, Petr; Hamano, Kenji; Hamilton, Andrew; Hamity, Guillermo Nicolas; Hamnett, Phillip George; Han, Liang; Hanagaki, Kazunori; Hanawa, Keita; Hance, Michael; Haney, Bijan; Hanke, Paul; Hanna, Remie; Hansen, Jørgen Beck; Hansen, Jorn Dines; Hansen, Maike Christina; Hansen, Peter Henrik; Hara, Kazuhiko; Hard, Andrew; Harenberg, Torsten; Hariri, Faten; Harkusha, Siarhei; Harrington, Robert; Harrison, Paul Fraser; Hartjes, Fred; Hasegawa, Makoto; Hasegawa, Yoji; Hasib, A; Hassani, Samira; Haug, Sigve; Hauser, Reiner; Hauswald, Lorenz; Havranek, Miroslav; Hawkes, Christopher; Hawkings, Richard John; Hawkins, Anthony David; Hayashi, Takayasu; Hayden, Daniel; Hays, Chris; Hays, Jonathan Michael; Hayward, Helen; Haywood, Stephen; Head, Simon; Heck, Tobias; Hedberg, Vincent; Heelan, Louise; Heim, Sarah; Heim, Timon; Heinemann, Beate; Heinrich, Lukas; Hejbal, Jiri; Helary, Louis; Hellman, Sten; Helsens, Clement; Henderson, James; Henderson, Robert; Heng, Yang; Henkelmann, Steffen; Henriques Correia, Ana Maria; Henrot-Versille, Sophie; Herbert, Geoffrey Henry; Hernández Jiménez, Yesenia; Herten, Gregor; Hertenberger, Ralf; Hervas, Luis; Hesketh, Gavin Grant; Hessey, Nigel; Hetherly, Jeffrey Wayne; Hickling, Robert; Higón-Rodriguez, Emilio; Hill, Ewan; Hill, John; Hiller, Karl Heinz; Hillier, Stephen; Hinchliffe, Ian; Hines, Elizabeth; Hinman, Rachel Reisner; Hirose, Minoru; Hirschbuehl, Dominic; Hobbs, John; Hod, Noam; Hodgkinson, Mark; Hodgson, Paul; Hoecker, Andreas; Hoeferkamp, Martin; Hoenig, Friedrich; Hohlfeld, Marc; Hohn, David; Holmes, Tova Ray; Homann, Michael; Hong, Tae Min; Hooberman, Benjamin Henry; Hopkins, Walter; Horii, Yasuyuki; Horton, Arthur James; Hostachy, Jean-Yves; Hou, Suen; Hoummada, Abdeslam; Howard, Jacob; Howarth, James; Hrabovsky, Miroslav; Hristova, Ivana; Hrivnac, Julius; Hryn'ova, Tetiana; Hrynevich, Aliaksei; Hsu, Catherine; Hsu, Pai-hsien Jennifer; Hsu, Shih-Chieh; Hu, Diedi; Hu, Qipeng; Huang, Yanping; Hubacek, Zdenek; Hubaut, Fabrice; Huegging, Fabian; Huffman, Todd Brian; Hughes, Emlyn; Hughes, Gareth; Huhtinen, Mika; Hülsing, Tobias Alexander; Huseynov, Nazim; Huston, Joey; Huth, John; Iacobucci, Giuseppe; Iakovidis, Georgios; Ibragimov, Iskander; Iconomidou-Fayard, Lydia; Ideal, Emma; Idrissi, Zineb; Iengo, Paolo; Igonkina, Olga; Iizawa, Tomoya; Ikegami, Yoichi; Ikeno, Masahiro; Ilchenko, Iurii; Iliadis, Dimitrios; Ilic, Nikolina; Ince, Tayfun; Introzzi, Gianluca; Ioannou, Pavlos; Iodice, Mauro; Iordanidou, Kalliopi; Ippolito, Valerio; Irles Quiles, Adrian; Isaksson, Charlie; Ishino, Masaya; Ishitsuka, Masaki; Ishmukhametov, Renat; Issever, Cigdem; Istin, Serhat; Iturbe Ponce, Julia Mariana; Iuppa, Roberto; Ivarsson, Jenny; Iwanski, Wieslaw; Iwasaki, Hiroyuki; Izen, Joseph; Izzo, Vincenzo; Jabbar, Samina; Jackson, Brett; Jackson, Matthew; Jackson, Paul; Jain, Vivek; Jakobi, Katharina Bianca; Jakobs, Karl; Jakobsen, Sune; Jakoubek, Tomas; Jamin, David Olivier; Jana, Dilip; Jansen, Eric; Jansky, Roland; Janssen, Jens; Janus, Michel; Jarlskog, Göran; Javadov, Namig; Javůrek, Tomáš; Jeanneau, Fabien; Jeanty, Laura; Jejelava, Juansher; Jeng, Geng-yuan; Jennens, David; Jenni, Peter; Jentzsch, Jennifer; Jeske, Carl; Jézéquel, Stéphane; Ji, Haoshuang; Jia, Jiangyong; Jiang, Hai; Jiang, Yi; Jiggins, Stephen; Jimenez Pena, Javier; Jin, Shan; Jinaru, Adam; Jinnouchi, Osamu; Johansson, Per; Johns, Kenneth; Johnson, William Joseph; Jon-And, Kerstin; Jones, Graham; Jones, Roger; Jones, Sarah; Jones, Tim; Jongmanns, Jan; Jorge, Pedro; Jovicevic, Jelena; Ju, Xiangyang; Juste Rozas, Aurelio; Köhler, Markus Konrad; Kaci, Mohammed; Kaczmarska, Anna; Kado, Marumi; Kagan, Harris; Kagan, Michael; Kahn, Sebastien Jonathan; Kajomovitz, Enrique; Kalderon, Charles William; Kaluza, Adam; Kama, Sami; Kamenshchikov, Andrey; Kanaya, Naoko; Kaneti, Steven; Kantserov, Vadim; Kanzaki, Junichi; Kaplan, Benjamin; Kaplan, Laser Seymour; Kapliy, Anton; Kar, Deepak; Karakostas, Konstantinos; Karamaoun, Andrew; Karastathis, Nikolaos; Kareem, Mohammad Jawad; Karentzos, Efstathios; Karnevskiy, Mikhail; Karpov, Sergey; Karpova, Zoya; Karthik, Krishnaiyengar; Kartvelishvili, Vakhtang; Karyukhin, Andrey; Kasahara, Kota; Kashif, Lashkar; Kass, Richard; Kastanas, Alex; Kataoka, Yousuke; Kato, Chikuma; Katre, Akshay; Katzy, Judith; Kawagoe, Kiyotomo; Kawamoto, Tatsuo; Kawamura, Gen; Kazama, Shingo; Kazanin, Vassili; Keeler, Richard; Kehoe, Robert; Keller, John; Kempster, Jacob Julian; Kentaro, Kawade; Keoshkerian, Houry; Kepka, Oldrich; Kerševan, Borut Paul; Kersten, Susanne; Keyes, Robert; Khalil-zada, Farkhad; Khandanyan, Hovhannes; Khanov, Alexander; Kharlamov, Alexey; Khoo, Teng Jian; Khovanskiy, Valery; Khramov, Evgeniy; Khubua, Jemal; Kido, Shogo; Kim, Hee Yeun; Kim, Shinhong; Kim, Young-Kee; Kimura, Naoki; Kind, Oliver Maria; King, Barry; King, Matthew; King, Samuel Burton; Kirk, Julie; Kiryunin, Andrey; Kishimoto, Tomoe; Kisielewska, Danuta; Kiss, Florian; Kiuchi, Kenji; Kivernyk, Oleh; Kladiva, Eduard; Klein, Matthew Henry; Klein, Max; Klein, Uta; Kleinknecht, Konrad; Klimek, Pawel; Klimentov, Alexei; Klingenberg, Reiner; Klinger, Joel Alexander; Klioutchnikova, Tatiana; Kluge, Eike-Erik; Kluit, Peter; Kluth, Stefan; Knapik, Joanna; Kneringer, Emmerich; Knoops, Edith; Knue, Andrea; Kobayashi, Aine; Kobayashi, Dai; Kobayashi, Tomio; Kobel, Michael; Kocian, Martin; Kodys, Peter; Koffas, Thomas; Koffeman, Els; Kogan, Lucy Anne; Kohlmann, Simon; Koi, Tatsumi; Kolanoski, Hermann; Kolb, Mathis; Koletsou, Iro; Komar, Aston; Komori, Yuto; Kondo, Takahiko; Kondrashova, Nataliia; Köneke, Karsten; König, Adriaan; Kono, Takanori; Konoplich, Rostislav; Konstantinidis, Nikolaos; Kopeliansky, Revital; Koperny, Stefan; Köpke, Lutz; Kopp, Anna Katharina; Korcyl, Krzysztof; Kordas, Kostantinos; Korn, Andreas; Korol, Aleksandr; Korolkov, Ilya; Korolkova, Elena; Kortner, Oliver; Kortner, Sandra; Kosek, Tomas; Kostyukhin, Vadim; Kotov, Vladislav; Kotwal, Ashutosh; Kourkoumeli-Charalampidi, Athina; Kourkoumelis, Christine; Kouskoura, Vasiliki; Koutsman, Alex; Kowalewski, Robert Victor; Kowalski, Tadeusz; Kozanecki, Witold; Kozhin, Anatoly; Kramarenko, Viktor; Kramberger, Gregor; Krasnopevtsev, Dimitriy; Krasny, Mieczyslaw Witold; Krasznahorkay, Attila; Kraus, Jana; Kravchenko, Anton; Kretz, Moritz; Kretzschmar, Jan; Kreutzfeldt, Kristof; Krieger, Peter; Krizka, Karol; Kroeninger, Kevin; Kroha, Hubert; Kroll, Joe; Kroseberg, Juergen; Krstic, Jelena; Kruchonak, Uladzimir; Krüger, Hans; Krumnack, Nils; Kruse, Amanda; Kruse, Mark; Kruskal, Michael; Kubota, Takashi; Kucuk, Hilal; Kuday, Sinan; Kuechler, Jan Thomas; Kuehn, Susanne; Kugel, Andreas; Kuger, Fabian; Kuhl, Andrew; Kuhl, Thorsten; Kukhtin, Victor; Kukla, Romain; Kulchitsky, Yuri; Kuleshov, Sergey; Kuna, Marine; Kunigo, Takuto; Kupco, Alexander; Kurashige, Hisaya; Kurochkin, Yurii; Kus, Vlastimil; Kuwertz, Emma Sian; Kuze, Masahiro; Kvita, Jiri; Kwan, Tony; Kyriazopoulos, Dimitrios; La Rosa, Alessandro; La Rosa Navarro, Jose Luis; La Rotonda, Laura; Lacasta, Carlos; Lacava, Francesco; Lacey, James; Lacker, Heiko; Lacour, Didier; Lacuesta, Vicente Ramón; Ladygin, Evgueni; Lafaye, Remi; Laforge, Bertrand; Lagouri, Theodota; Lai, Stanley; Lambourne, Luke; Lammers, Sabine; Lampen, Caleb; Lampl, Walter; Lançon, Eric; Landgraf, Ulrich; Landon, Murrough; Lang, Valerie Susanne; Lange, J örn Christian; Lankford, Andrew; Lanni, Francesco; Lantzsch, Kerstin; Lanza, Agostino; Laplace, Sandrine; Lapoire, Cecile; Laporte, Jean-Francois; Lari, Tommaso; Lasagni Manghi, Federico; Lassnig, Mario; Laurelli, Paolo; Lavrijsen, Wim; Law, Alexander; Laycock, Paul; Lazovich, Tomo; Le Dortz, Olivier; Le Guirriec, Emmanuel; Le Menedeu, Eve; LeBlanc, Matthew Edgar; LeCompte, Thomas; Ledroit-Guillon, Fabienne Agnes Marie; Lee, Claire Alexandra; Lee, Shih-Chang; Lee, Lawrence; Lefebvre, Guillaume; Lefebvre, Michel; Legger, Federica; Leggett, Charles; Lehan, Allan; Lehmann Miotto, Giovanna; Lei, Xiaowen; Leight, William Axel; Leisos, Antonios; Leister, Andrew Gerard; Leite, Marco Aurelio Lisboa; Leitner, Rupert; Lellouch, Daniel; Lemmer, Boris; Leney, Katharine; Lenz, Tatjana; Lenzi, Bruno; Leone, Robert; Leone, Sandra; Leonidopoulos, Christos; Leontsinis, Stefanos; Leroy, Claude; Lester, Christopher; Levchenko, Mikhail; Levêque, Jessica; Levin, Daniel; Levinson, Lorne; Levy, Mark; Lewis, Adrian; Leyko, Agnieszka; Leyton, Michael; Li, Bing; Li, Haifeng; Li, Ho Ling; Li, Lei; Li, Liang; Li, Shu; Li, Xingguo; Li, Yichen; Liang, Zhijun; Liao, Hongbo; Liberti, Barbara; Liblong, Aaron; Lichard, Peter; Lie, Ki; Liebal, Jessica; Liebig, Wolfgang; Limbach, Christian; Limosani, Antonio; Lin, Simon; Lin, Tai-Hua; Lindquist, Brian Edward; Lipeles, Elliot; Lipniacka, Anna; Lisovyi, Mykhailo; Liss, Tony; Lissauer, David; Lister, Alison; Litke, Alan; Liu, Bo; Liu, Dong; Liu, Hao; Liu, Hongbin; Liu, Jian; Liu, Jianbei; Liu, Kun; Liu, Lulu; Liu, Miaoyuan; Liu, Minghui; Liu, Yanlin; Liu, Yanwen; Livan, Michele; Lleres, Annick; Llorente Merino, Javier; Lloyd, Stephen; Lo Sterzo, Francesco; Lobodzinska, Ewelina; Loch, Peter; Lockman, William; Loebinger, Fred; Loevschall-Jensen, Ask Emil; Loew, Kevin Michael; Loginov, Andrey; Lohse, Thomas; Lohwasser, Kristin; Lokajicek, Milos; Long, Brian Alexander; Long, Jonathan David; Long, Robin Eamonn; Looper, Kristina Anne; Lopes, Lourenco; Lopez Mateos, David; Lopez Paredes, Brais; Lopez Paz, Ivan; Lopez Solis, Alvaro; Lorenz, Jeanette; Lorenzo Martinez, Narei; Losada, Marta; Lösel, Philipp Jonathan; Lou, XinChou; Lounis, Abdenour; Love, Jeremy; Love, Peter; Lu, Haonan; Lu, Nan; Lubatti, Henry; Luci, Claudio; Lucotte, Arnaud; Luedtke, Christian; Luehring, Frederick; Lukas, Wolfgang; Luminari, Lamberto; Lundberg, Olof; Lund-Jensen, Bengt; Lynn, David; Lysak, Roman; Lytken, Else; Ma, Hong; Ma, Lian Liang; Maccarrone, Giovanni; Macchiolo, Anna; Macdonald, Calum Michael; Maček, Boštjan; Machado Miguens, Joana; Madaffari, Daniele; Madar, Romain; Maddocks, Harvey Jonathan; Mader, Wolfgang; Madsen, Alexander; Maeda, Junpei; Maeland, Steffen; Maeno, Tadashi; Maevskiy, Artem; Magradze, Erekle; Mahlstedt, Joern; Maiani, Camilla; Maidantchik, Carmen; Maier, Andreas Alexander; Maier, Thomas; Maio, Amélia; Majewski, Stephanie; Makida, Yasuhiro; Makovec, Nikola; Malaescu, Bogdan; Malecki, Pawel; Maleev, Victor; Malek, Fairouz; Mallik, Usha; Malon, David; Malone, Caitlin; Maltezos, Stavros; Malyukov, Sergei; Mamuzic, Judita; Mancini, Giada; Mandelli, Beatrice; Mandelli, Luciano; Mandić, Igor; Maneira, José; Manhaes de Andrade Filho, Luciano; Manjarres Ramos, Joany; Mann, Alexander; Mansoulie, Bruno; Mantifel, Rodger; Mantoani, Matteo; Manzoni, Stefano; Mapelli, Livio; March, Luis; Marchiori, Giovanni; Marcisovsky, Michal; Marjanovic, Marija; Marley, Daniel; Marroquim, Fernando; Marsden, Stephen Philip; Marshall, Zach; Marti, Lukas Fritz; Marti-Garcia, Salvador; Martin, Brian Thomas; Martin, Tim; Martin, Victoria Jane; Martin dit Latour, Bertrand; Martinez, Mario; Martin-Haugh, Stewart; Martoiu, Victor Sorin; Martyniuk, Alex; Marx, Marilyn; Marzano, Francesco; Marzin, Antoine; Masetti, Lucia; Mashimo, Tetsuro; Mashinistov, Ruslan; Masik, Jiri; Maslennikov, Alexey; Massa, Ignazio; Massa, Lorenzo; Mastrandrea, Paolo; Mastroberardino, Anna; Masubuchi, Tatsuya; Mättig, Peter; Mattmann, Johannes; Maurer, Julien; Maxfield, Stephen; Maximov, Dmitriy; Mazini, Rachid; Mazza, Simone Michele; Mc Fadden, Neil Christopher; Mc Goldrick, Garrin; Mc Kee, Shawn Patrick; McCarn, Allison; McCarthy, Robert; McCarthy, Tom; McFarlane, Kenneth; Mcfayden, Josh; Mchedlidze, Gvantsa; McMahon, Steve; McPherson, Robert; Medinnis, Michael; Meehan, Samuel; Mehlhase, Sascha; Mehta, Andrew; Meier, Karlheinz; Meineck, Christian; Meirose, Bernhard; Mellado Garcia, Bruce Rafael; Meloni, Federico; Mengarelli, Alberto; Menke, Sven; Meoni, Evelin; Mercurio, Kevin Michael; Mergelmeyer, Sebastian; Mermod, Philippe; Merola, Leonardo; Meroni, Chiara; Merritt, Frank; Messina, Andrea; Metcalfe, Jessica; Mete, Alaettin Serhan; Meyer, Carsten; Meyer, Christopher; Meyer, Jean-Pierre; Meyer, Jochen; Meyer Zu Theenhausen, Hanno; Middleton, Robin; Miglioranzi, Silvia; Mijović, Liza; Mikenberg, Giora; Mikestikova, Marcela; Mikuž, Marko; Milesi, Marco; Milic, Adriana; Miller, David; Mills, Corrinne; Milov, Alexander; Milstead, David; Minaenko, Andrey; Minami, Yuto; Minashvili, Irakli; Mincer, Allen; Mindur, Bartosz; Mineev, Mikhail; Ming, Yao; Mir, Lluisa-Maria; Mistry, Khilesh; Mitani, Takashi; Mitrevski, Jovan; Mitsou, Vasiliki A; Miucci, Antonio; Miyagawa, Paul; Mjörnmark, Jan-Ulf; Moa, Torbjoern; Mochizuki, Kazuya; Mohapatra, Soumya; Mohr, Wolfgang; Molander, Simon; Moles-Valls, Regina; Monden, Ryutaro; Mondragon, Matthew Craig; Mönig, Klaus; Monk, James; Monnier, Emmanuel; Montalbano, Alyssa; Montejo Berlingen, Javier; Monticelli, Fernando; Monzani, Simone; Moore, Roger; Morange, Nicolas; Moreno, Deywis; Moreno Llácer, María; Morettini, Paolo; Mori, Daniel; Mori, Tatsuya; Morii, Masahiro; Morinaga, Masahiro; Morisbak, Vanja; Moritz, Sebastian; Morley, Anthony Keith; Mornacchi, Giuseppe; Morris, John; Mortensen, Simon Stark; Morvaj, Ljiljana; Mosidze, Maia; Moss, Josh; Motohashi, Kazuki; Mount, Richard; Mountricha, Eleni; Mouraviev, Sergei; Moyse, Edward; Muanza, Steve; Mudd, Richard; Mueller, Felix; Mueller, James; Mueller, Ralph Soeren Peter; Mueller, Thibaut; Muenstermann, Daniel; Mullen, Paul; Mullier, Geoffrey; Munoz Sanchez, Francisca Javiela; Murillo Quijada, Javier Alberto; Murray, Bill; Musheghyan, Haykuhi; Myagkov, Alexey; Myska, Miroslav; Nachman, Benjamin Philip; Nackenhorst, Olaf; Nadal, Jordi; Nagai, Koichi; Nagai, Ryo; Nagai, Yoshikazu; Nagano, Kunihiro; Nagasaka, Yasushi; Nagata, Kazuki; Nagel, Martin; Nagy, Elemer; Nairz, Armin Michael; Nakahama, Yu; Nakamura, Koji; Nakamura, Tomoaki; Nakano, Itsuo; Namasivayam, Harisankar; Naranjo Garcia, Roger Felipe; Narayan, Rohin; Narrias Villar, Daniel Isaac; Naryshkin, Iouri; Naumann, Thomas; Navarro, Gabriela; Nayyar, Ruchika; Neal, Homer; Nechaeva, Polina; Neep, Thomas James; Nef, Pascal Daniel; Negri, Andrea; Negrini, Matteo; Nektarijevic, Snezana; Nellist, Clara; Nelson, Andrew; Nemecek, Stanislav; Nemethy, Peter; Nepomuceno, Andre Asevedo; Nessi, Marzio; Neubauer, Mark; Neumann, Manuel; Neves, Ricardo; Nevski, Pavel; Newman, Paul; Nguyen, Duong Hai; Nickerson, Richard; Nicolaidou, Rosy; Nicquevert, Bertrand; Nielsen, Jason; Nikiforov, Andriy; Nikolaenko, Vladimir; Nikolic-Audit, Irena; Nikolopoulos, Konstantinos; Nilsen, Jon Kerr; Nilsson, Paul; Ninomiya, Yoichi; Nisati, Aleandro; Nisius, Richard; Nobe, Takuya; Nodulman, Lawrence; Nomachi, Masaharu; Nomidis, Ioannis; Nooney, Tamsin; Norberg, Scarlet; Nordberg, Markus; Novgorodova, Olga; Nowak, Sebastian; Nozaki, Mitsuaki; Nozka, Libor; Ntekas, Konstantinos; Nurse, Emily; Nuti, Francesco; O'grady, Fionnbarr; O'Neil, Dugan; O'Shea, Val; Oakham, Gerald; Oberlack, Horst; Obermann, Theresa; Ocariz, Jose; Ochi, Atsuhiko; Ochoa, Ines; Ochoa-Ricoux, Juan Pedro; Oda, Susumu; Odaka, Shigeru; Ogren, Harold; Oh, Alexander; Oh, Seog; Ohm, Christian; Ohman, Henrik; Oide, Hideyuki; Okawa, Hideki; Okumura, Yasuyuki; Okuyama, Toyonobu; Olariu, Albert; Oleiro Seabra, Luis Filipe; Olivares Pino, Sebastian Andres; Oliveira Damazio, Denis; Olszewski, Andrzej; Olszowska, Jolanta; Onofre, António; Onogi, Kouta; Onyisi, Peter; Oram, Christopher; Oreglia, Mark; Oren, Yona; Orestano, Domizia; Orlando, Nicola; Orr, Robert; Osculati, Bianca; Ospanov, Rustem; Otero y Garzon, Gustavo; Otono, Hidetoshi; Ouchrif, Mohamed; Ould-Saada, Farid; Ouraou, Ahmimed; Oussoren, Koen Pieter; Ouyang, Qun; Ovcharova, Ana; Owen, Mark; Owen, Rhys Edward; Ozcan, Veysi Erkcan; Ozturk, Nurcan; Pachal, Katherine; Pacheco Pages, Andres; Padilla Aranda, Cristobal; Pagáčová, Martina; Pagan Griso, Simone; Paige, Frank; Pais, Preema; Pajchel, Katarina; Palacino, Gabriel; Palestini, Sandro; Palka, Marek; Pallin, Dominique; Palma, Alberto; Panagiotopoulou, Evgenia; Pandini, Carlo Enrico; Panduro Vazquez, William; Pani, Priscilla; Panitkin, Sergey; Pantea, Dan; Paolozzi, Lorenzo; Papadopoulou, Theodora; Papageorgiou, Konstantinos; Paramonov, Alexander; Paredes Hernandez, Daniela; Parker, Michael Andrew; Parker, Kerry Ann; Parodi, Fabrizio; Parsons, John; Parzefall, Ulrich; Pascuzzi, Vincent; Pasqualucci, Enrico; Passaggio, Stefano; Pastore, Fernanda; Pastore, Francesca; Pásztor, Gabriella; Pataraia, Sophio; Patel, Nikhul; Pater, Joleen; Pauly, Thilo; Pearce, James; Pearson, Benjamin; Pedersen, Lars Egholm; Pedersen, Maiken; Pedraza Lopez, Sebastian; Pedro, Rute; Peleganchuk, Sergey; Pelikan, Daniel; Penc, Ondrej; Peng, Cong; Peng, Haiping; Penning, Bjoern; Penwell, John; Perepelitsa, Dennis; Perez Codina, Estel; Perini, Laura; Pernegger, Heinz; Perrella, Sabrina; Peschke, Richard; Peshekhonov, Vladimir; Peters, Krisztian; Peters, Yvonne; Petersen, Brian; Petersen, Troels; Petit, Elisabeth; Petridis, Andreas; Petridou, Chariclia; Petroff, Pierre; Petrolo, Emilio; Petrucci, Fabrizio; Pettersson, Nora Emilia; Peyaud, Alan; Pezoa, Raquel; Phillips, Peter William; Piacquadio, Giacinto; Pianori, Elisabetta; Picazio, Attilio; Piccaro, Elisa; Piccinini, Maurizio; Pickering, Mark Andrew; Piegaia, Ricardo; Pilcher, James; Pilkington, Andrew; Pin, Arnaud Willy J; Pina, João Antonio; Pinamonti, Michele; Pinfold, James; Pingel, Almut; Pires, Sylvestre; Pirumov, Hayk; Pitt, Michael; Pizio, Caterina; Plazak, Lukas; Pleier, Marc-Andre; Pleskot, Vojtech; Plotnikova, Elena; Plucinski, Pawel; Pluth, Daniel; Poettgen, Ruth; Poggioli, Luc; Pohl, David-leon; Polesello, Giacomo; Poley, Anne-luise; Policicchio, Antonio; Polifka, Richard; Polini, Alessandro; Pollard, Christopher Samuel; Polychronakos, Venetios; Pommès, Kathy; Pontecorvo, Ludovico; Pope, Bernard; Popeneciu, Gabriel Alexandru; Popovic, Dragan; Poppleton, Alan; Pospisil, Stanislav; Potamianos, Karolos; Potrap, Igor; Potter, Christina; Potter, Christopher; Poulard, Gilbert; Poveda, Joaquin; Pozdnyakov, Valery; Pozo Astigarraga, Mikel Eukeni; Pralavorio, Pascal; Pranko, Aliaksandr; Prell, Soeren; Price, Darren; Price, Lawrence; Primavera, Margherita; Prince, Sebastien; Proissl, Manuel; Prokofiev, Kirill; Prokoshin, Fedor; Protopapadaki, Eftychia-sofia; Protopopescu, Serban; Proudfoot, James; Przybycien, Mariusz; Puddu, Daniele; Puldon, David; Purohit, Milind; Puzo, Patrick; Qian, Jianming; Qin, Gang; Qin, Yang; Quadt, Arnulf; Quarrie, David; Quayle, William; Queitsch-Maitland, Michaela; Quilty, Donnchadha; Raddum, Silje; Radeka, Veljko; Radescu, Voica; Radhakrishnan, Sooraj Krishnan; Radloff, Peter; Rados, Pere; Ragusa, Francesco; Rahal, Ghita; Rajagopalan, Srinivasan; Rammensee, Michael; Rangel-Smith, Camila; Rauscher, Felix; Rave, Stefan; Ravenscroft, Thomas; Raymond, Michel; Read, Alexander Lincoln; Readioff, Nathan Peter; Rebuzzi, Daniela; Redelbach, Andreas; Redlinger, George; Reece, Ryan; Reeves, Kendall; Rehnisch, Laura; Reichert, Joseph; Reisin, Hernan; Rembser, Christoph; Ren, Huan; Rescigno, Marco; Resconi, Silvia; Rezanova, Olga; Reznicek, Pavel; Rezvani, Reyhaneh; Richter, Robert; Richter, Stefan; Richter-Was, Elzbieta; Ricken, Oliver; Ridel, Melissa; 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Sokhrannyi, Grygorii; Solans Sanchez, Carlos; Solar, Michael; Soldatov, Evgeny; Soldevila, Urmila; Solodkov, Alexander; Soloshenko, Alexei; Solovyanov, Oleg; Solovyev, Victor; Sommer, Philip; Song, Hong Ye; Soni, Nitesh; Sood, Alexander; Sopczak, Andre; Sopko, Vit; Sorin, Veronica; Sosa, David; Sotiropoulou, Calliope Louisa; Soualah, Rachik; Soukharev, Andrey; South, David; Sowden, Benjamin; Spagnolo, Stefania; Spalla, Margherita; Spangenberg, Martin; Spanò, Francesco; Sperlich, Dennis; Spettel, Fabian; Spighi, Roberto; Spigo, Giancarlo; Spiller, Laurence Anthony; Spousta, Martin; St Denis, Richard Dante; Stabile, Alberto; Stahlman, Jonathan; Stamen, Rainer; Stamm, Soren; Stanecka, Ewa; Stanek, Robert; Stanescu, Cristian; Stanescu-Bellu, Madalina; Stanitzki, Marcel Michael; Stapnes, Steinar; Starchenko, Evgeny; Stark, Giordon; Stark, Jan; Staroba, Pavel; Starovoitov, Pavel; Stärz, Steffen; Staszewski, Rafal; Steinberg, Peter; Stelzer, Bernd; Stelzer, Harald Joerg; Stelzer-Chilton, Oliver; Stenzel, Hasko; Stewart, Graeme; Stillings, Jan Andre; Stockton, Mark; Stoebe, Michael; Stoicea, Gabriel; Stolte, Philipp; Stonjek, Stefan; Stradling, Alden; Straessner, Arno; Stramaglia, Maria Elena; Strandberg, Jonas; Strandberg, Sara; Strandlie, Are; Strauss, Michael; Strizenec, Pavol; Ströhmer, Raimund; Strom, David; Stroynowski, Ryszard; Strubig, Antonia; Stucci, Stefania Antonia; Stugu, Bjarne; Styles, Nicholas Adam; Su, Dong; Su, Jun; Subramaniam, Rajivalochan; Suchek, Stanislav; Sugaya, Yorihito; Suk, Michal; Sulin, Vladimir; Sultansoy, Saleh; Sumida, Toshi; Sun, Siyuan; Sun, Xiaohu; Sundermann, Jan Erik; Suruliz, Kerim; Susinno, Giancarlo; Sutton, Mark; Suzuki, Shota; Svatos, Michal; Swiatlowski, Maximilian; Sykora, Ivan; Sykora, Tomas; Ta, Duc; Taccini, Cecilia; Tackmann, Kerstin; Taenzer, Joe; Taffard, Anyes; Tafirout, Reda; Taiblum, Nimrod; Takai, Helio; Takashima, Ryuichi; Takeda, Hiroshi; Takeshita, Tohru; Takubo, Yosuke; Talby, Mossadek; Talyshev, Alexey; Tam, Jason; Tan, Kong Guan; Tanaka, Junichi; Tanaka, Reisaburo; Tanaka, Shuji; Tannenwald, Benjamin Bordy; Tapia Araya, Sebastian; Tapprogge, Stefan; Tarem, Shlomit; Tartarelli, Giuseppe Francesco; Tas, Petr; Tasevsky, Marek; Tashiro, Takuya; Tassi, Enrico; Tavares Delgado, Ademar; Tayalati, Yahya; Taylor, Aaron; Taylor, Geoffrey; Taylor, Pierre Thor Elliot; Taylor, Wendy; Teischinger, Florian Alfred; Teixeira-Dias, Pedro; Temming, Kim Katrin; Temple, Darren; Ten Kate, Herman; Teng, Ping-Kun; Teoh, Jia Jian; Tepel, Fabian-Phillipp; Terada, Susumu; Terashi, Koji; Terron, Juan; Terzo, Stefano; Testa, Marianna; Teuscher, Richard; Theveneaux-Pelzer, Timothée; Thomas, Juergen; Thomas-Wilsker, Joshuha; Thompson, Emily; Thompson, Paul; Thompson, Ray; Thompson, Stan; Thomsen, Lotte Ansgaard; Thomson, Evelyn; Thomson, Mark; Tibbetts, Mark James; Ticse Torres, Royer Edson; Tikhomirov, Vladimir; Tikhonov, Yury; Timoshenko, Sergey; Tiouchichine, Elodie; Tipton, Paul; Tisserant, Sylvain; Todome, Kazuki; Todorov, Theodore; Todorova-Nova, Sharka; Tojo, Junji; Tokár, Stanislav; Tokushuku, Katsuo; Tolley, Emma; Tomlinson, Lee; Tomoto, Makoto; Tompkins, Lauren; Toms, Konstantin; Tong, Baojia(Tony); Torrence, Eric; Torres, Heberth; Torró Pastor, Emma; Toth, Jozsef; Touchard, Francois; Tovey, Daniel; Trefzger, Thomas; Tricoli, Alessandro; Trigger, Isa