Atmospheres of polygons and knotted polygons

International Nuclear Information System (INIS)

Janse Rensburg, E J Janse; Rechnitzer, A

2008-01-01

In this paper we define two statistics a + (ω) and a - (ω), the positive and negative atmospheres of a lattice polygon ω of fixed length n. These statistics have the property that (a + (ω))/(a - (ω)) = p n+2 /p n , where p n is the number of polygons of length n, counted modulo translations. We use the pivot algorithm to sample polygons and to compute the corresponding average atmospheres. Using these data, we directly estimate the growth constants of polygons in two and three dimensions. We find that μ=2.63805±0.00012 in two dimensions and μ=4.683980±0.000042±0.000067 in three dimensions, where the error bars are 67% confidence intervals, and the second error bar in the three-dimensional estimate of μ is an estimated systematic error. We also compute atmospheres of polygons of fixed knot type K sampled by the BFACF algorithm. We discuss the implications of our results and show that different knot types have atmospheres which behave dramatically differently at small values of n

The role of ZIP transporters and group F bZIP transcription factors in the Zn-deficiency response of wheat (Triticum aestivum).

Science.gov (United States)

Evens, Nicholas P; Buchner, Peter; Williams, Lorraine E; Hawkesford, Malcolm J

2017-10-01

Understanding the molecular basis of zinc (Zn) uptake and transport in staple cereal crops is critical for improving both Zn content and tolerance to low-Zn soils. This study demonstrates the importance of group F bZIP transcription factors and ZIP transporters in responses to Zn deficiency in wheat (Triticum aestivum). Seven group F TabZIP genes and 14 ZIPs with homeologs were identified in hexaploid wheat. Promoter analysis revealed the presence of Zn-deficiency-response elements (ZDREs) in a number of the ZIPs. Functional complementation of the zrt1/zrt2 yeast mutant by TaZIP3, -6, -7, -9 and -13 supported an ability to transport Zn. Group F TabZIPs contain the group-defining cysteine-histidine-rich motifs, which are the predicted binding site of Zn 2+ in the Zn-deficiency response. Conservation of these motifs varied between the TabZIPs suggesting that individual TabZIPs may have specific roles in the wheat Zn-homeostatic network. Increased expression in response to low Zn levels was observed for several of the wheat ZIPs and bZIPs; this varied temporally and spatially suggesting specific functions in the response mechanism. The ability of the group F TabZIPs to bind to specific ZDREs in the promoters of TaZIPs indicates a conserved mechanism in monocots and dicots in responding to Zn deficiency. In support of this, TabZIPF1-7DL and TabZIPF4-7AL afforded a strong level of rescue to the Arabidopsis hypersensitive bzip19 bzip23 double mutant under Zn deficiency. These results provide a greater understanding of Zn-homeostatic mechanisms in wheat, demonstrating an expanded repertoire of group F bZIP transcription factors, adding to the complexity of Zn homeostasis. © 2017 The Authors The Plant Journal published by John Wiley & Sons Ltd and Society for Experimental Biology.

Convex Lattice Polygons

Science.gov (United States)

Scott, Paul

2006-01-01

A "convex" polygon is one with no re-entrant angles. Alternatively one can use the standard convexity definition, asserting that for any two points of the convex polygon, the line segment joining them is contained completely within the polygon. In this article, the author provides a solution to a problem involving convex lattice polygons.

A Novel Wheat C-bZIP Gene, TabZIP14-B, Participates in Salt and Freezing Tolerance in Transgenic Plants

Directory of Open Access Journals (Sweden)

Lina Zhang

2017-05-01

Full Text Available The group C-bZIP transcription factors (TFs are involved in diverse biological processes, such as the regulation of seed storage protein (SSP production and the responses to pathogen challenge and abiotic stress. However, our knowledge of the abiotic functions of group C-bZIP genes in wheat remains limited. Here, we present the function of a novel TabZIP14-B gene in wheat. This gene belongs to the group C-bZIP TFs and contains six exons and five introns; three haplotypes were identified among accessions of tetraploid and hexaploid wheat. A subcellular localization analysis indicated that TabZIP14-B was targeted to the nucleus of tobacco epidermal cells. A transactivation assay demonstrated that TabZIP14-B showed transcriptional activation ability and was capable of binding the abscisic acid (ABA responsive element (ABRE in yeast. RT-qPCR revealed that TabZIP14-B was expressed in the roots, stems, leaves, and young spikes and was up-regulated by exogenous ABA, salt, low-temperature, and polyethylene glycol (PEG stress treatments. Furthermore, Arabidopsis plants overexpressing TabZIP14-B exhibited enhanced tolerance to salt, freezing stresses and ABA sensitivity. Overexpression of TabZIP14-B resulted in increased expression of the AtRD29A, AtCOR47, AtRD20, AtGSTF6, and AtRAB18 genes and changes in several physiological characteristics. These results suggest that TabZIP14-B could function as a positive regulator in mediating the abiotic stress response.

Automatic Sequences and Zip-Specifications

NARCIS (Netherlands)

Grabmayer, C.A.; Endrullis, J.; Hendriks, D.; Klop, J.W.; Moss, L.S.

2012-01-01

We consider infinite sequences of symbols, also known as streams, and the decidability question for equality of streams defined in a restricted format. This restricted format consists of prefixing a symbol at the head of a stream, of the stream function `zip', and recursion variables. Here `zip'

Aberdeen polygons: computer displays of physiological profiles for intensive care.

Science.gov (United States)

Green, C A; Logie, R H; Gilhooly, K J; Ross, D G; Ronald, A

1996-03-01

The clinician in an intensive therapy unit is presented regularly with a range of information about the current physiological state of the patients under care. This information typically comes from a variety of sources and in a variety of formats. A more integrated form of display incorporating several physiological parameters may be helpful therefore. Three experiments are reported that explored the potential use of analogue, polygon diagrams to display physiological data from patients undergoing intensive therapy. Experiment 1 demonstrated that information can be extracted readily from such diagrams comprising 8- or 10-sided polygons, but with an advantage for simpler polygons and for information displayed at the top of the diagram. Experiment 2 showed that colour coding removed these biases for simpler polygons and the top of the diagram, together with speeding the processing time. Experiment 3 used polygons displaying patterns of physiological data that were consistent with typical conditions observed in the intensive care unit. It was found that physicians can readily learn to recognize these patterns and to diagnose both the nature and severity of the patient's physiological state. These polygon diagrams appear to have some considerable potential for use in providing on-line summary information of a patient's physiological state.

Floating polygon soup

OpenAIRE

Colleu , Thomas; Morin , Luce; Pateux , Stéphane; Labit , Claude

2011-01-01

International audience; This paper presents a new representation called floating polygon soup for applications like 3DTV and FTV (Free Viewpoint Television). This representation is based on 3D polygons and takes as input MVD data. It extends the previously proposed polygon soup representation which is appropriate for both compression, transmission and rendering stages. The floating polygon soup conserves these advantages while also taking into account misalignments at the view synthesis stage...

Two-convex polygons

OpenAIRE

Aichholzer, Oswin; Aurenhammer, Franz; Hurtado Díaz, Fernando Alfredo; Ramos, Pedro A.; Urrutia, J.

2009-01-01

We introduce a notion of k-convexity and explore some properties of polygons that have this property. In particular, 2-convex polygons can be recognized in O(n log n) time, and k-convex polygons can be triangulated in O(kn) time.

Soybean extracts increase cell surface ZIP4 abundance and cellular zinc levels: a potential novel strategy to enhance zinc absorption by ZIP4 targeting.

Science.gov (United States)

Hashimoto, Ayako; Ohkura, Katsuma; Takahashi, Masakazu; Kizu, Kumiko; Narita, Hiroshi; Enomoto, Shuichi; Miyamae, Yusaku; Masuda, Seiji; Nagao, Masaya; Irie, Kazuhiro; Ohigashi, Hajime; Andrews, Glen K; Kambe, Taiho

2015-12-01

Dietary zinc deficiency puts human health at risk, so we explored strategies for enhancing zinc absorption. In the small intestine, the zinc transporter ZIP4 functions as an essential component of zinc absorption. Overexpression of ZIP4 protein increases zinc uptake and thereby cellular zinc levels, suggesting that food components with the ability to increase ZIP4 could potentially enhance zinc absorption via the intestine. In the present study, we used mouse Hepa cells, which regulate mouse Zip4 (mZip4) in a manner indistinguishable from that in intestinal enterocytes, to screen for suitable food components that can increase the abundance of ZIP4. Using this ZIP4-targeting strategy, two such soybean extracts were identified that were specifically able to decrease mZip4 endocytosis in response to zinc. These soybean extracts also effectively increased the abundance of apically localized mZip4 in transfected polarized Caco2 and Madin-Darby canine kidney cells and, moreover, two apically localized mZip4 acrodermatitis enteropathica mutants. Soybean components were purified from one extract and soyasaponin Bb was identified as an active component that increased both mZip4 protein abundance and zinc levels in Hepa cells. Finally, we confirmed that soyasaponin Bb is capable of enhancing cell surface endogenous human ZIP4 in human cells. Our results suggest that ZIP4 targeting may represent a new strategy to improve zinc absorption in humans. © 2015 Authors; published by Portland Press Limited.

SlbZIP38, a Tomato bZIP Family Gene Downregulated by Abscisic Acid, Is a Negative Regulator of Drought and Salt Stress Tolerance

Science.gov (United States)

Pan, Yanglu; Hu, Xin; Li, Chunyan; Xu, Xing; Su, Chenggang; Li, Jinhua; Song, Hongyuan; Zhang, Xingguo; Pan, Yu

2017-01-01

The basic leucine zipper (bZIP) transcription factors have crucial roles in plant stress responses. In this study, the bZIP family gene SlbZIP38 (GenBank accession No: XM004239373) was isolated from a tomato (Solanum lycopersicum cv. Ailsa Craig) mature leaf cDNA library. The DNA sequence of SlbZIP38 encodes a protein of 484 amino acids, including a highly conserved bZIP DNA-binding domain in the C-terminal region. We found that SlbZIP38 was differentially expressed in various organs of the tomato plant and was downregulated by drought, salt stress, and abscisic acid (ABA). However, overexpression of SlbZIP38 significantly decreased drought and salt stress tolerance in tomatoes (Ailsa Craig). The findings that SlbZIP38 overexpression reduced the chlorophyll and free proline content in leaves but increased the malondialdehyde content may explain the reduced drought and salt tolerance observed in these lines. These results suggest that SlbZIP38 is a negative regulator of drought and salt resistance that acts by modulating ABA signaling. PMID:29261143

Ergodicity of polygonal slap maps

International Nuclear Information System (INIS)

Del Magno, Gianluigi; Pedro Gaivão, José; Lopes Dias, João; Duarte, Pedro

2014-01-01

Polygonal slap maps are piecewise affine expanding maps of the interval obtained by projecting the sides of a polygon along their normals onto the perimeter of the polygon. These maps arise in the study of polygonal billiards with non-specular reflection laws. We study the absolutely continuous invariant probabilities (acips) of the slap maps for several polygons, including regular polygons and triangles. We also present a general method for constructing polygons with slap maps with more than one ergodic acip. (paper)

Polygons and Their Circles

Science.gov (United States)

Stephenson, Paul

2009-01-01

In order to find its circumference, Archimedes famously boxed the circle between two polygons. Ending the first of a series of articles (MT179) with an aside, Francis Lopez-Real reverses the situation to ask: Which polygons can be boxed between two circles? (The official term for such polygons is "bicentric".) The sides of these polygons are…

Structure and function of homodomain-leucine zipper (HD-Zip) proteins.

Science.gov (United States)

Elhiti, Mohamed; Stasolla, Claudio

2009-02-01

Homeodomain-leucine zipper (HD-Zip) proteins are transcription factors unique to plants and are encoded by more than 25 genes in Arabidopsis thaliana. Based on sequence analyses these proteins have been classified into four distinct groups: HD-Zip I-IV. HD-Zip proteins are characterized by the presence of two functional domains; a homeodomain (HD) responsible for DNA binding and a leucine zipper domain (Zip) located immediately C-terminal to the homeodomain and involved in protein-protein interaction. Despite sequence similarities HD-ZIP proteins participate in a variety of processes during plant growth and development. HD-Zip I proteins are generally involved in responses related to abiotic stress, abscisic acid (ABA), blue light, de-etiolation and embryogenesis. HD-Zip II proteins participate in light response, shade avoidance and auxin signalling. Members of the third group (HD-Zip III) control embryogenesis, leaf polarity, lateral organ initiation and meristem function. HD-Zip IV proteins play significant roles during anthocyanin accumulation, differentiation of epidermal cells, trichome formation and root development.

Zernike-like systems in polygons and polygonal facets.

Science.gov (United States)

Ferreira, Chelo; López, José L; Navarro, Rafael; Sinusía, Ester Pérez

2015-07-20

Zernike polynomials are commonly used to represent the wavefront phase on circular optical apertures, since they form a complete and orthonormal basis on the unit disk. In [Opt. Lett.32, 74 (2007)10.1364/OL.32.000074OPLEDP0146-9592] we introduced a new Zernike basis for elliptic and annular optical apertures based on an appropriate diffeomorphism between the unit disk and the ellipse and the annulus. Here, we present a generalization of this Zernike basis for a variety of important optical apertures, paying special attention to polygons and the polygonal facets present in segmented mirror telescopes. On the contrary to ad hoc solutions, most of them based on the Gram-Smith orthonormalization method, here we consider a piecewise diffeomorphism that transforms the unit disk into the polygon under consideration. We use this mapping to define a Zernike-like orthonormal system over the polygon. We also consider ensembles of polygonal facets that are essential in the design of segmented mirror telescopes. This generalization, based on in-plane warping of the basis functions, provides a unique solution, and what is more important, it guarantees a reasonable level of invariance of the mathematical properties and the physical meaning of the initial basis functions. Both the general form and the explicit expressions for a typical example of telescope optical aperture are provided.

Pan-Domain Analysis of ZIP Zinc Transporters

Directory of Open Access Journals (Sweden)

Laura E. Lehtovirta-Morley

2017-12-01

Full Text Available The ZIP (Zrt/Irt-like protein family of zinc transporters is found in all three domains of life. However, little is known about the phylogenetic relationship amongst ZIP transporters, their distribution, or their origin. Here we employed phylogenetic analysis to explore the evolution of ZIP transporters, with a focus on the major human fungal pathogen, Candida albicans. Pan-domain analysis of bacterial, archaeal, fungal, and human proteins revealed a complex relationship amongst the ZIP family members. Here we report (i a eukaryote-wide group of cellular zinc importers, (ii a fungal-specific group of zinc importers having genetic association with the fungal zincophore, and, (iii a pan-kingdom supercluster made up of two distinct subgroups with orthologues in bacterial, archaeal, and eukaryotic phyla.

The bZIP protein from Tamarix hispida, ThbZIP1, is ACGT elements binding factor that enhances abiotic stress signaling in transgenic Arabidopsis.

Science.gov (United States)

Ji, Xiaoyu; Liu, Guifeng; Liu, Yujia; Zheng, Lei; Nie, Xianguang; Wang, Yucheng

2013-10-04

Tamarix spp. are woody halophyte, which are very tolerant to abiotic stresses such as salinity and drought, but little is known about their specific stress response systems. Basic leucine zipper proteins (bZIPs) play important roles in the ability of plants to withstand adverse environmental conditions. However, their exact roles in abiotic stress tolerance are still not fully known. In the current study, we functionally characterized a bZIP gene (ThbZIP1) from Tamarix hispida in response to abiotic stresses. We addressed the regulatory network of ThbZIP1 in three levels, i.e. its upstream regulators, the cis-acting elements recognized by ThbZIP1, and its downstream target genes. Two MYCs were found to bind to E-box, in the promoter of ThbZIP1 to activate its expression. Expression of ThbZIP1 is induced by ABA, salt, drought, methyl viologen and cold. ThbZIP1 can specifically bind to ACGT elements, with the highest binding affinity to the C-box, followed by the G-box and lastly the A-box. Compared with wild-type (Col-0) Arabidopsis, transgenic plants expressing ThbZIP1 had an increased tolerance to drought and salt, but had an increased sensitivity to ABA during seed germination and root growth; meanwhile, ROS level, cell death and water loss rate in transgenic plants were significantly reduced. Microarray analyses showed that many ROS scavenging genes were up-regulated by ThbZIP1 under salt stress conditions. Based on these data, we suggest that ThbZIP1 confers abiotic stress tolerance through activating stress tolerance genes to modulate ROS scavenging ability and other physiological changes involved in stress tolerance, and plays an important role in the ABA-mediated stress response of T. hispida.

Generalized polygons

CERN Document Server

Maldeghem, Hendrik

1998-01-01

This book is intended to be an introduction to the fascinating theory ofgeneralized polygons for both the graduate student and the specialized researcher in the field. It gathers together a lot of basic properties (some of which are usually referred to in research papers as belonging to folklore) and very recent and sometimes deep results. I have chosen a fairly strict geometrical approach, which requires some knowledge of basic projective geometry. Yet, it enables one to prove some typically group-theoretical results such as the determination of the automorphism groups of certain Moufang polygons. As such, some basic group-theoretical knowledge is required of the reader. The notion of a generalized polygon is a relatively recent one. But it is one of the most important concepts in incidence geometry. Generalized polygons are the building bricks of Tits buildings. They are the prototypes and precursors of more general geometries such as partial geometries, partial quadrangles, semi-partial ge­ ometries, near...

Generalized polygons

CERN Document Server

Van Maldeghem, Hendrik

1998-01-01

Generalized Polygons is the first book to cover, in a coherent manner, the theory of polygons from scratch. In particular, it fills elementary gaps in the literature and gives an up-to-date account of current research in this area, including most proofs, which are often unified and streamlined in comparison to the versions generally known. Generalized Polygons will be welcomed both by the student seeking an introduction to the subject as well as the researcher who will value the work as a reference. In particular, it will be of great value for specialists working in the field of generalized polygons (which are, incidentally, the rank 2 Tits-buildings) or in fields directly related to Tits-buildings, incidence geometry and finite geometry. The approach taken in the book is of geometric nature, but algebraic results are included and proven (in a geometric way!). A noteworthy feature is that the book unifies and generalizes notions, definitions and results that exist for quadrangles, hexagons, octagons - in the ...

Origin of giant Martian polygons

Science.gov (United States)

Mcgill, George E.; Hills, L. S.

1992-01-01

Extensive areas of the Martian northern plains in Utopia and Acidalia planitiae are characterized by 'polygonal terrane'. Polygonal terrane consists of material cut by complex troughs defining a pattern resembling mudcracks, columnar joints, or frost-wedge polygons on earth. However, the Martian polygons are orders of magnitude larger than these potential earth analogues, leading to severe mechanical difficulties for genetic models based on simple analogy arguments. Plate-bending and finite element models indicate that shrinkage of desiccating sediment or cooling volcanics accompanied by differential compaction over buried topography can account for the stresses responsible for polygon troughs as well as the large size of the polygons. Although trough widths and depths relate primarily to shrinkage, the large scale of the polygonl pattern relates to the spacing between topographic elevations on the surface buried beneath polygonal terrane material. Geological relationships favor a sedimentary origin for polygonal terrane material, but our model is not dependent on the specific genesis. Our analysis also suggests that the polygons must have formed at a geologically rapid rate.

Error-Detecting Identification Codes for Algebra Students.

Science.gov (United States)

Sutherland, David C.

1990-01-01

Discusses common error-detecting identification codes using linear algebra terminology to provide an interesting application of algebra. Presents examples from the International Standard Book Number, the Universal Product Code, bank identification numbers, and the ZIP code bar code. (YP)

High Latitude Polygons

Science.gov (United States)

2005-01-01

26 September 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows polygonal patterned ground on a south high-latitude plain. The outlines of the polygons, like the craters and hills in this region, are somewhat enhanced by the presence of bright frost left over from the previous winter. On Earth, polygons at high latitudes would usually be attributed to the seasonal freezing and thawing cycles of ground ice. The origin of similar polygons on Mars is less certain, but might also be an indicator of ground ice. Location near: 75.3oS, 113.2oW Image width: width: 3 km (1.9 mi) Illumination from: upper left Season: Southern Spring

Knotting in stretched polygons

International Nuclear Information System (INIS)

Rensburg, E J Janse van; Orlandini, E; Tesi, M C; Whittington, S G

2008-01-01

The knotting in a lattice polygon model of ring polymers is examined when a stretching force is applied to the polygon. By examining the incidence of cut-planes in the polygon, we prove a pattern theorem in the stretching regime for large applied forces. This theorem can be used to examine the incidence of entanglements such as knotting and writhing. In particular, we prove that for arbitrarily large positive, but finite, values of the stretching force, the probability that a stretched polygon is knotted approaches 1 as the length of the polygon increases. In the case of writhing, we prove that for stretched polygons of length n, and for every function f(n)=o(√n), the probability that the absolute value of the mean writhe is less than f(n) approaches 0 as n → ∞, for sufficiently large values of the applied stretching force

Functional Analysis of Maize Silk-Specific ZmbZIP25 Promoter

Directory of Open Access Journals (Sweden)

Wanying Li

2018-03-01

Full Text Available ZmbZIP25 (Zea mays bZIP (basic leucine zipper transcription factor 25 is a function-unknown protein that belongs to the D group of the bZIP transcription factor family. RNA-seq data showed that the expression of ZmbZIP25 was tissue-specific in maize silks, and this specificity was confirmed by RT-PCR (reverse transcription-polymerase chain reaction. In situ RNA hybridization showed that ZmbZIP25 was expressed exclusively in the xylem of maize silks. A 5′ RACE (rapid amplification of cDNA ends assay identified an adenine residue as the transcription start site of the ZmbZIP25 gene. To characterize this silk-specific promoter, we isolated and analyzed a 2450 bp (from −2083 to +367 and a 2600 bp sequence of ZmbZIP25 (from −2083 to +517, the transcription start site was denoted +1. Stable expression assays in Arabidopsis showed that the expression of the reporter gene GUS driven by the 2450 bp ZmbZIP25 5′-flanking fragment occurred exclusively in the papillae of Arabidopsis stigmas. Furthermore, transient expression assays in maize indicated that GUS and GFP expression driven by the 2450 bp ZmbZIP25 5′-flanking sequences occurred only in maize silks and not in other tissues. However, no GUS or GFP expression was driven by the 2600 bp ZmbZIP25 5′-flanking sequences in either stable or transient expression assays. A series of deletion analyses of the 2450 bp ZmbZIP25 5′-flanking sequence was performed in transgenic Arabidopsis plants, and probable elements prediction analysis revealed the possible presence of negative regulatory elements within the 161 bp region from −1117 to −957 that were responsible for the specificity of the ZmbZIP25 5′-flanking sequence.

Bioinformatic Analyses of Subgroup-A Members of the Wheat bZIP Transcription Factor Family and Functional Identification of TabZIP174 Involved in Drought Stress Response

Directory of Open Access Journals (Sweden)

Xueyin Li

2016-11-01

Full Text Available Extensive studies in Arabidopsis and rice have demonstrated that Subgroup-A members of the bZIP transcription factor family play important roles in plant responses to multiple abiotic stresses. Although common wheat (Triticum aestivum is one of the most widely cultivated and consumed food crops in the world, there are limited investigations into Subgroup A of the bZIP family in wheat. In this study, we performed bioinformatic analyses of the 41 Subgroup-A members of the wheat bZIP family. Phylogenetic and conserved motif analyses showed that most of the Subgroup-A bZIP proteins involved in abiotic stress responses of wheat, Arabidopsis and rice clustered in Clade A1 of the phylogenetic tree, and shared a majority of conserved motifs, suggesting the potential importance of Clade-A1 members in abiotic stress responses. Gene structure analysis showed that TabZIP genes with close phylogenetic relationships tended to possess similar exon-intron compositions, and the positions of introns in the hinge regions of the bZIP domains were highly conserved, whereas introns in the leucine zipper regions were at variable positions. Additionally, eleven groups of homologs and two groups of tandem paralogs were also identified in Subgroup A of the wheat bZIP family. Expression profiling analysis indicated that most Subgroup-A TabZIP genes were responsive to abscisic acid and various abiotic stress treatments. TabZIP27, TabZIP74, TabZIP138 and TabZIP174 proteins were localized in the nucleus of wheat protoplasts, whereas TabZIP9-GFP fusion protein was simultaneously present in the nucleus, cytoplasm and cell membrane. Transgenic Arabidopsis overexpressing TabZIP174 displayed increased seed germination rates and primary root lengths under drought treatments. Overexpression of TabZIP174 in transgenic Arabidopsis conferred enhanced drought tolerance, and transgenic plants exhibited lower water loss rates, higher survival rates, higher proline, soluble sugar and leaf

Bioinformatic Analyses of Subgroup-A Members of the Wheat bZIP Transcription Factor Family and Functional Identification of TabZIP174 Involved in Drought Stress Response

Science.gov (United States)

Li, Xueyin; Feng, Biane; Zhang, Fengjie; Tang, Yimiao; Zhang, Liping; Ma, Lingjian; Zhao, Changping; Gao, Shiqing

2016-01-01

Extensive studies in Arabidopsis and rice have demonstrated that Subgroup-A members of the bZIP transcription factor family play important roles in plant responses to multiple abiotic stresses. Although common wheat (Triticum aestivum) is one of the most widely cultivated and consumed food crops in the world, there are limited investigations into Subgroup A of the bZIP family in wheat. In this study, we performed bioinformatic analyses of the 41 Subgroup-A members of the wheat bZIP family. Phylogenetic and conserved motif analyses showed that most of the Subgroup-A bZIP proteins involved in abiotic stress responses of wheat, Arabidopsis, and rice clustered in Clade A1 of the phylogenetic tree, and shared a majority of conserved motifs, suggesting the potential importance of Clade-A1 members in abiotic stress responses. Gene structure analysis showed that TabZIP genes with close phylogenetic relationships tended to possess similar exon–intron compositions, and the positions of introns in the hinge regions of the bZIP domains were highly conserved, whereas introns in the leucine zipper regions were at variable positions. Additionally, eleven groups of homologs and two groups of tandem paralogs were also identified in Subgroup A of the wheat bZIP family. Expression profiling analysis indicated that most Subgroup-A TabZIP genes were responsive to abscisic acid and various abiotic stress treatments. TabZIP27, TabZIP74, TabZIP138, and TabZIP174 proteins were localized in the nucleus of wheat protoplasts, whereas TabZIP9-GFP fusion protein was simultaneously present in the nucleus, cytoplasm, and cell membrane. Transgenic Arabidopsis overexpressing TabZIP174 displayed increased seed germination rates and primary root lengths under drought treatments. Overexpression of TabZIP174 in transgenic Arabidopsis conferred enhanced drought tolerance, and transgenic plants exhibited lower water loss rates, higher survival rates, higher proline, soluble sugar, and leaf chlorophyll

Area of Lattice Polygons

Science.gov (United States)

Scott, Paul

2006-01-01

A lattice is a (rectangular) grid of points, usually pictured as occurring at the intersections of two orthogonal sets of parallel, equally spaced lines. Polygons that have lattice points as vertices are called lattice polygons. It is clear that lattice polygons come in various shapes and sizes. A very small lattice triangle may cover just 3…

Frosty Polygons

Science.gov (United States)

2004-01-01

16 January 2004 Looking somewhat like a roadmap, this 3 km (1.9 mi) wide view of a cratered plain in the martian south polar region shows a plethora of cracks that form polygonal patterns. This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image is located near 78.9oS, 357.3oW. Polygons such as these, where they are found on Earth, would be indicators of the presence of subsurface ice. Whether the same is true for Mars is uncertain. What is certain is that modern, seasonal frost on the surface enhances the appearance of the polygons as the frost persists longer in the cracks than on adjacent plains. This southern springtime image is illuminated by sunlight from the upper left.

Cross-sectional association between ZIP code-level gentrification and homelessness among a large community-based sample of people who inject drugs in 19 US cities.

Science.gov (United States)

Linton, Sabriya L; Cooper, Hannah Lf; Kelley, Mary E; Karnes, Conny C; Ross, Zev; Wolfe, Mary E; Friedman, Samuel R; Jarlais, Don Des; Semaan, Salaam; Tempalski, Barbara; Sionean, Catlainn; DiNenno, Elizabeth; Wejnert, Cyprian; Paz-Bailey, Gabriela

2017-06-20

Housing instability has been associated with poor health outcomes among people who inject drugs (PWID). This study investigates the associations of local-level housing and economic conditions with homelessness among a large sample of PWID, which is an underexplored topic to date. PWID in this cross-sectional study were recruited from 19 large cities in the USA as part of National HIV Behavioral Surveillance. PWID provided self-reported information on demographics, behaviours and life events. Homelessness was defined as residing on the street, in a shelter, in a single room occupancy hotel, or in a car or temporarily residing with friends or relatives any time in the past year. Data on county-level rental housing unaffordability and demand for assisted housing units, and ZIP code-level gentrification (eg, index of percent increases in non-Hispanic white residents, household income, gross rent from 1990 to 2009) and economic deprivation were collected from the US Census Bureau and Department of Housing and Urban Development. Multilevel models evaluated the associations of local economic and housing characteristics with homelessness. Sixty percent (5394/8992) of the participants reported homelessness in the past year. The multivariable model demonstrated that PWID living in ZIP codes with higher levels of gentrification had higher odds of homelessness in the past year (gentrification: adjusted OR=1.11, 95% CI=1.04 to 1.17). Additional research is needed to determine the mechanisms through which gentrification increases homelessness among PWID to develop appropriate community-level interventions. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Generating Health Estimates by Zip Code: A Semiparametric Small Area Estimation Approach Using the California Health Interview Survey.

Science.gov (United States)

Wang, Yueyan; Ponce, Ninez A; Wang, Pan; Opsomer, Jean D; Yu, Hongjian

2015-12-01

We propose a method to meet challenges in generating health estimates for granular geographic areas in which the survey sample size is extremely small. Our generalized linear mixed model predicts health outcomes using both individual-level and neighborhood-level predictors. The model's feature of nonparametric smoothing function on neighborhood-level variables better captures the association between neighborhood environment and the outcome. Using 2011 to 2012 data from the California Health Interview Survey, we demonstrate an empirical application of this method to estimate the fraction of residents without health insurance for Zip Code Tabulation Areas (ZCTAs). Our method generated stable estimates of uninsurance for 1519 of 1765 ZCTAs (86%) in California. For some areas with great socioeconomic diversity across adjacent neighborhoods, such as Los Angeles County, the modeled uninsured estimates revealed much heterogeneity among geographically adjacent ZCTAs. The proposed method can increase the value of health surveys by providing modeled estimates for health data at a granular geographic level. It can account for variations in health outcomes at the neighborhood level as a result of both socioeconomic characteristics and geographic locations.

Small-scale polygons on Mars

Science.gov (United States)

Lucchitta, B. K.

1984-01-01

Polygonal-fracture patterns on the martian surface were discovered on Viking Orbiter images. The polygons are 2-20 km in diameter, much larger than those of known patterned ground on Earth. New observations show, however, that polygons exist on Mars that have diameters similar to those of ice-wedge polygons on Earth (generally a few meters to more than 100 m). Various explanations for the origin of these crustal features are examined; seasonal desiccation and thermal-contraction cracking in ice-rich ground. It is difficult to ascertain whether the polygons are forming today or are relics from the past. The crispness of some crack suggests a recent origin. On the other hand the absence of upturned edges (indicating actively forming ice wedges), the locally disintegrating ground, and a few possible superposed rayed craters indicate that the polygons are not forming at the present.

Overexpression of a wheat (Triticum aestivum L.) bZIP transcription factor gene, TabZIP6, decreased the freezing tolerance of transgenic Arabidopsis seedlings by down-regulating the expression of CBFs.

Science.gov (United States)

Cai, Wangting; Yang, Yaling; Wang, Weiwei; Guo, Guangyan; Liu, Wei; Bi, Caili

2018-03-01

The basic leucine zipper (bZIP) proteins play important roles against abiotic stress in plants, including cold stress. However, most bZIPs involved in plant freezing tolerance are positive regulators. Only a few bZIPs function negatively in cold stress response. In this study, TabZIP6, a Group C bZIP transcription factor gene from common wheat (Triticum aestivum L.), was cloned and characterized. The transcript of TabZIP6 was strongly induced by cold treatment (4 °C). TabZIP6 is a nuclear-localized protein with transcriptional activation activity. Arabidopsis plants overexpressing TabZIP6 showed decreased tolerance to freezing stress. Microarray as well as quantitative real-time PCR (qRT-PCR) analysis showed that CBFs and some key COR genes, including COR47 and COR15B, were down-regulated by cold treatment in TabZIP6-overexpressing Arabidopsis lines. TabZIP6 was capable of binding to the G-box motif and the CBF1 and CBF3 promoters in yeast cells. A yeast two-hybrid assay revealed that TabZIP6, as well as the other two Group S bZIP proteins involved in cold stress tolerance in wheat, Wlip19 and TaOBF1, can form homodimers by themselves and heterodimers with each other. These results suggest that TabZIP6 may function negatively in the cold stress response by binding to the promoters of CBFs, and thereby decreasing the expression of downstream COR genes in TabZIP6-overexpressing Arabidopsis seedlings. Copyright © 2018. Published by Elsevier Masson SAS.

Zipping dielectric elastomer actuators: characterization, design and modeling

International Nuclear Information System (INIS)

Maffli, L; Rosset, S; Shea, H R

2013-01-01

We report on miniature dielectric elastomer actuators (DEAs) operating in zipping mode with an analytical model that predicts their behavior. Electrostatic zipping is a well-known mechanism in silicon MEMS to obtain large deformations and forces at lower voltages than for parallel plate electrostatic actuation. We extend this concept to DEAs, which allows us to obtain much larger out-of-plane displacements compared to silicon thanks to the softness of the elastomer membrane. We study experimentally the effect of sidewall angles and elastomer prestretch on 2.3 mm diameter actuators with PDMS membranes. With 15° and 22.5° sidewall angles, the devices zip in a bistable manner down 300 μm to the bottom of the chambers. The highly tunable bistable behavior is controllable by both chamber geometry and membrane parameters. Other specific characteristics of zipping DEAs include well-controlled deflected shape, tunable displacement versus voltage characteristics to virtually any shape, including multi-stable modes, sealing of embedded holes or channels for valving action and the reduction of the operating voltage. These properties make zipping DEAs an excellent candidate for applications such as integrated microfluidics actuators or Braille displays. (paper)

Rotating Polygons on a Fluid Surface

DEFF Research Database (Denmark)

Bohr, Tomas; Jansson, Thomas; Haspang, Martin

spontaneously and the surface can take the shape of a rigidly rotating polygon. With water we have observed polygons with up to 6 corners. The rotation speed of the polygons does not coincide with that of the plate, but it is often mode-locked, such that the polygon rotates by one corner for each complete...... and R. Miraghaie, ”Symmetry breaking in free-surface cylinder flows”, J. Fluid Mech., 502, 99 (2004)). The polygons occur at much larger Reynolds numbers, for water around 500.000. Correspondingly, the dependence on viscosity is rather small....

Polar Polygons

Science.gov (United States)

2005-01-01

18 August 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows dark-outlined polygons on a frost-covered surface in the south polar region of Mars. In summer, this surface would not be bright and the polygons would not have dark outlines--these are a product of the presence of seasonal frost. Location near: 77.2oS, 204.8oW Image width: width: 3 km (1.9 mi) Illumination from: upper left Season: Southern Spring

Stress sensing in plants by the ER stress sensor/transducer, bZIP28

Directory of Open Access Journals (Sweden)

Renu eSrivastava

2014-02-01

Full Text Available Two classes of ER stress sensors are known in plants, membrane associated bZIP transcription factors and RNA splicing factors. ER stress occurs under adverse environmental conditions and results from the accumulation of misfolded or unfolded proteins in the ER lumen. One of the membrane-associated transcription factors activated by heat and ER stress agents is bZIP28. In its inactive form, bZIP28 is a type II protein with a single pass transmembrane domain, residing in the ER. bZIP28’s N-terminus, containing a transcriptional activation domain, is oriented towards the cytoplasm and its C-terminal tail is inserted into the ER lumen. In response to stress, bZIP28 exits the ER and moves to the Golgi where it is proteolytically processed, liberating its cytosolic component which relocates to the nucleus to upregulate stress-response genes. bZIP28 is thought to sense stress through its interaction with the major ER chaperone, BIP. BiP binds to bZIP28’s lumenal domain under unstressed conditions and retains it in the ER. BIP binds to the intrinsically disordered regions on bZIP28’s lumen-facing tail. A truncated form of bZIP28, without its C-terminal tail is not retained in the ER but migrates constitutively to the nucleus. Upon stress, BiP releases bZIP28 allowing it to exit the ER. One model to account for the release of bZIP28 by BiP is that BiP is competed away from bZIP28 by the accumulation of misfolded proteins in the ER. However, other forces such as changes in energy charge levels, redox conditions or interaction with DNAJ proteins may also promote release of bZIP28 from BiP. Movement of bZIP28 from the ER to the Golgi is assisted by the interaction of elements of the COPII machinery with the cytoplasmic domain of bZIP28. Thus, the mobilization of bZIP28 in response to stress involves the dissociation of factors that retain it in the ER and the association of factors that mediate its further organelle-to-organelle movement.

Stretched polygons in a lattice tube

Energy Technology Data Exchange (ETDEWEB)

Atapour, M [Department of Mathematics and Statistics, York University, Toronto, ON M3J 1P3 (Canada); Soteros, C E [Department of Mathematics and Statistics, University of Saskatchewan, Saskatoon, SK S7N 5E6 (Canada); Whittington, S G [Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6 (Canada)], E-mail: atapour@mathstat.yorku.ca, E-mail: soteros@math.usask.ca, E-mail: swhittin@chem.utoronto.ca

2009-08-14

We examine the topological entanglements of polygons confined to a lattice tube and under the influence of an external tensile force f. The existence of the limiting free energy for these so-called stretched polygons is proved and then, using transfer matrix arguments, a pattern theorem for stretched polygons is proved. Note that the tube constraint allows us to prove a pattern theorem for any arbitrary value of f, while without the tube constraint it has so far only been proved for large values of f. The stretched polygon pattern theorem is used first to show that the average span per edge of a randomly chosen n-edge stretched polygon approaches a positive value, non-decreasing in f, as n {yields} {infinity}. We then show that the knotting probability of an n-edge stretched polygon confined to a tube goes to one exponentially as n {yields} {infinity}. Thus as n {yields} {infinity} when polygons are influenced by a force f, no matter its strength or direction, topological entanglements, as defined by knotting, occur with high probability. (fast track communication)

Stretched polygons in a lattice tube

International Nuclear Information System (INIS)

Atapour, M; Soteros, C E; Whittington, S G

2009-01-01

We examine the topological entanglements of polygons confined to a lattice tube and under the influence of an external tensile force f. The existence of the limiting free energy for these so-called stretched polygons is proved and then, using transfer matrix arguments, a pattern theorem for stretched polygons is proved. Note that the tube constraint allows us to prove a pattern theorem for any arbitrary value of f, while without the tube constraint it has so far only been proved for large values of f. The stretched polygon pattern theorem is used first to show that the average span per edge of a randomly chosen n-edge stretched polygon approaches a positive value, non-decreasing in f, as n → ∞. We then show that the knotting probability of an n-edge stretched polygon confined to a tube goes to one exponentially as n → ∞. Thus as n → ∞ when polygons are influenced by a force f, no matter its strength or direction, topological entanglements, as defined by knotting, occur with high probability. (fast track communication)

Novel mechanism of aberrant ZIP4 expression with zinc supplementation in oral tumorigenesis

International Nuclear Information System (INIS)

Ishida, Sho; Kasamatsu, Atsushi; Endo-Sakamoto, Yosuke; Nakashima, Dai; Koide, Nao; Takahara, Toshikazu; Shimizu, Toshihiro; Iyoda, Manabu; Shiiba, Masashi; Tanzawa, Hideki; Uzawa, Katsuhiro

2017-01-01

Zrt-Irt-like protein 4 (ZIP4) is critical molecule for proper mammalian development and releasing zinc from vesicular compartments. Recent studies suggested that ZIP4 plays an important role of tumor progression in pancreatic, prostate, and hepatocellular cancers, however, little is known about the detail mechanism of ZIP4 in their cancers. In the present study, we examined the possibility of ZIP4 as a new molecular target for oral squamous cell carcinoma (OSCC). We evaluated ZIP4 expression in OSCC-derived cell lines and primary OSCC samples by quantitative RT-PCR, immunoblotting, and immunohistochemistry (IHC). We also analyzed the clinical correlation between ZIP4 status and clinical behaviors in patients with OSCC. In addition, ZIP4 knockdown cells (shZIP4 cells) and ZnCl 2 treatment were used for functional experiments, including cellular proliferation assay, zinc uptake assay, and cell-cycle analysis. ZIP4 mRNA and protein were up-regulated significantly in OSCCs compared with normal counterparts in vitro and in vivo. IHC showed that ZIP4 expression in the primary OSCC was positively correlated with primary tumoral size. The shZIP4 cells showed decrease accumulation of intercellular zinc and decreased cellular growth by cell-cycle arrest at the G1 phase, resulting from up-regulation of cyclin-dependent kinase inhibitors and down-regulation of cyclins and cyclin-dependent kinases. Since cellular growth of OSCC cells after treatment with zinc was significantly greater than control cells, we speculated that intercellular ZnCl 2 accumulation is an important factor for cellular growth. Consistent with our hypothesis, not only decreased zinc uptake by ZIP4 knockdown but also chelating agent, N,N,N′,N′-tetrakis(2-pyridylmethyl) ethylenediamine (TPEN), showed inhibitory effects of cellular proliferation. Therefore, our data provide evidence for an essential role of ZIP4 and intracellular zinc for tumoral growth in OSCC, suggesting that zinc uptake might be a

Polygons near Lyot Crater

Science.gov (United States)

2003-01-01

MGS MOC Release No. MOC2-564, 4 December 2003This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows patterned ground, arranged in the form of polygons, on the undulating plains associated with ejecta from the Lyot impact crater on the martian northern plains. This picture was acquired in October 2003 and shows that the polygon margins are ridges with large boulders--shown here as dark dots--on them. On Earth, polygon patterns like this are created in arctic and antarctic regions where there is ice in the ground. The seasonal and longer-term cycles of freezing and thawing of the ice-rich ground cause these features to form over time. Whether the same is true for Mars is unknown. The polygons are located near 54.6oN, 326.6oW. The image covers an area 3 km (1.9 mi) wide and is illuminated from the lower left.

Tensor Product of Polygonal Cell Complexes

OpenAIRE

Chien, Yu-Yen

2017-01-01

We introduce the tensor product of polygonal cell complexes, which interacts nicely with the tensor product of link graphs of complexes. We also develop the unique factorization property of polygonal cell complexes with respect to the tensor product, and study the symmetries of tensor products of polygonal cell complexes.

Homotopic Polygonal Line Simplification

DEFF Research Database (Denmark)

Deleuran, Lasse Kosetski

This thesis presents three contributions to the area of polygonal line simplification, or simply line simplification. A polygonal path, or simply a path is a list of points with line segments between the points. A path can be simplified by morphing it in order to minimize some objective function...

FEMA DFIRM Panel Scheme Polygons

Data.gov (United States)

Minnesota Department of Natural Resources — This layer contains information about the Flood Insurance Rate Map (FIRM) panel areas. The spatial entities representing FIRM panels are polygons. The polygon for...

Polygons on Crater Floor

Science.gov (United States)

2003-01-01

MGS MOC Release No. MOC2-357, 11 May 2003This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) picture shows a pattern of polygons on the floor of a northern plains impact crater. These landforms are common on crater floors at high latitudes on Mars. Similar polygons occur in the arctic and antarctic regions of Earth, where they indicate the presence and freeze-thaw cycling of ground ice. Whether the polygons on Mars also indicate water ice in the ground is uncertain. The image is located in a crater at 64.8oN, 292.7oW. Sunlight illuminates the scene from the lower left.

MEMS variable capacitance devices utilizing the substrate: II. Zipping varactors

KAUST Repository

Elshurafa, Amro M.

2010-03-22

This paper, the second and last in this series, introduces PolyMUMPS zipping varactors that exploit the substrate and provide a high tuning range and a high quality factor. Building on the important findings of part I of this paper, the substrate was utilized effectively once again in the design and fabrication of zipping varactors to attain devices with very good performance. Two zipping varactors are proposed, analysed theoretically, simulated, fabricated and tested successfully. The tuning range, quality factor and actuation voltage of those varactors are 4.5, 16.4, 55 V and 4.2, 17, 55 V respectively. Finally, and based on one of the proposed zipping varactors, a very large capacitance value varactor array, with a tuning range of 5.3, was designed and tested. To the best of our knowledge, these zipping varactors exhibit the best reported characteristics in PolyMUMPS to date within their category in terms of tuning range, quality factor, required actuation voltage and total area consumed. © 2010 IOP Publishing Ltd.

Perceptually stable regions for arbitrary polygons.

Science.gov (United States)

Rocha, J

2003-01-01

Zou and Yan have recently developed a skeletonization algorithm of digital shapes based on a regularity/singularity analysis; they use the polygon whose vertices are the boundary pixels of the image to compute a constrained Delaunay triangulation (CDT) in order to find local symmetries and stable regions. Their method has produced good results but it is slow since its complexity depends on the number of contour pixels. This paper presents an extension of their technique to handle arbitrary polygons, not only polygons of short edges. Consequently, not only can we achieve results as good as theirs for digital images, but we can also compute skeletons of polygons of any number of edges. Since we can handle polygonal approximations of figures, the skeletons are more resilient to noise and faster to process.

Random packing of regular polygons and star polygons on a flat two-dimensional surface.

Science.gov (United States)

Cieśla, Michał; Barbasz, Jakub

2014-08-01

Random packing of unoriented regular polygons and star polygons on a two-dimensional flat continuous surface is studied numerically using random sequential adsorption algorithm. Obtained results are analyzed to determine the saturated random packing ratio as well as its density autocorrelation function. Additionally, the kinetics of packing growth and available surface function are measured. In general, stars give lower packing ratios than polygons, but when the number of vertexes is large enough, both shapes approach disks and, therefore, properties of their packing reproduce already known results for disks.

Approximation algorithms for guarding holey polygons ...

African Journals Online (AJOL)

Guarding edges of polygons is a version of art gallery problem.The goal is finding the minimum number of guards to cover the edges of a polygon. This problem is NP-hard, and to our knowledge there are approximation algorithms just for simple polygons. In this paper we present two approximation algorithms for guarding ...

Random walks and polygons in tight confinement

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Ziegler, U

2014-01-01

We discuss the effect of confinement on the topology and geometry of tightly confined random walks and polygons. Here the walks and polygons are confined in a sphere of radius R ≥ 1/2 and the polygons are equilateral with n edges of unit length. We illustrate numerically that for a fixed length of random polygons the knotting probability increases to one as the radius decreases to 1/2. We also demonstrate that for random polygons (walks) the curvature increases to πn (π(n – 1)) as the radius approaches 1/2 and that the torsion decreases to ≈ πn/3 (≈ π(n – 1)/3). In addition we show the effect of length and confinement on the average crossing number of a random polygon

Ares Vallis Polygons

Science.gov (United States)

2002-01-01

[figure removed for brevity, see original site] This jumble of eroded ridges and mesas occurs within Ares Vallis, one of the largest catastrophic outflow channels on the planet. Floods raged through this channel, portions of which are up to 25 km wide, pouring out into the Chryse Basin to the north. Close inspection of the THEMIS image reveals polygonal shapes on the floor of the channel system. Polygonal terrain on Mars is fairly common although the variety of forms and scales of the polygons suggests multiple modes of origin. Those in Ares Vallis resemble giant desiccation polygons that form in soils on Earth when a moist layer at depth drys out. While polygons can form in icy soils (permafrost) and even lava flows, their presence in a channel thought to have been carved by flowing water is at least consistent with a mode of origin that involved liquid water.Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

The regulatory network of ThbZIP1 in response to abscisic acid treatment

Directory of Open Access Journals (Sweden)

Xiaoyu eJi

2015-02-01

Full Text Available Previously, a bZIP transcription factor from Tamarix hispida, ThbZIP1, was characterized: plants overexpressing ThbZIP1 displayed improved salt stress tolerance but were sensitive to abscisic acid (ABA. In the current study, we further characterized the regulatory network of ThbZIP1 and the mechanism of ABA sensitivity mediated by ThbZIP1. An ABF transcription factor from T. hispida, ThABF1, directly regulates the expression of ThbZIP1. Microarray analysis identified 1,662 and 1,609 genes that were respectively significantly upregulated or downregulated by ThbZIP1 when exposed to ABA. GO analysis showed that the processes including response to stimulus, catalytic activity, binding function, and metabolic process were highly altered in ThbZIP1 expressing plants exposed to ABA. The gene expression in ThbZIP1 transformed plants were compared between exposed to ABA and salt on the genome scale. Genes differentially regulated by both salt and ABA treatment only accounted for 9.75% of total differentially regulated genes. GO analysis showed that structural molecule activity, organelle part, membrane-enclosed lumen, reproduction and reproductive process are enhanced by ABA but inhibited by salt stress. Conversely, immune system and multi-organism process were improved by salt but inhibited by ABA. Transcription regulator activity, enzyme regulator activity and developmental process were significantly altered by ABA but were not affected by salt stress. Our study provides insights into how ThbZIP1 mediates ABA and salt stress response at the molecular level.

Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response

International Nuclear Information System (INIS)

Tajima, Hiromi; Iwata, Yuji; Iwano, Megumi; Takayama, Seiji; Koizumi, Nozomu

2008-01-01

Among 75 bZIP transcription factors identified in Arabidopsis, 3 (AtbZIP17, AtbZIP28, and AtbZIP49) possess a putative transmembrane domain (TMD) in addition to AtbZIP60, which was characterized previously. In the present study, cDNAs of AtbZIP17 and AtbZIP28 were isolated. Truncated forms of AtbZIP17 and AtbZIP28 lacking the C-terminal domain including TMD were examined as putative active forms. One of them, AtbZIP28ΔC, activated BiP1 and BiP3 promoters through the cis-elements P-UPRE and ERSE responsible for the ER stress response. Subsequently, a fusion protein of green fluorescent protein (GFP) and AtbZIP28 was expressed in Arabidopsis cultured cells. Under non-stress conditions, GFP fluorescence localization almost overlapped with an ER marker; however, tunicamycin and dithiothreitol treatment clearly increased GFP fluorescence in the nucleus suggesting that the N-terminal fragment of AtbZIP28 translocates to the nucleus in response to ER stress

Near polygons and Fischer spaces

NARCIS (Netherlands)

Brouwer, A.E.; Cohen, A.M.; Hall, J.I.; Wilbrink, H.A.

1994-01-01

In this paper we exploit the relations between near polygons with lines of size 3 and Fischer spaces to classify near hexagons with quads and with lines of size three. We also construct some infinite families of near polygons.

Genomic survey of bZIP transcription factor genes related to tanshinone biosynthesis in Salvia miltiorrhiza

Directory of Open Access Journals (Sweden)

Yu Zhang

2018-03-01

Full Text Available Tanshinones are a class of bioactive components in the traditional Chinese medicine Salvia miltiorrhiza, and their biosynthesis and regulation have been widely studied. Current studies show that basic leucine zipper (bZIP proteins regulate plant secondary metabolism, growth and developmental processes. However, the bZIP transcription factors involved in tanshinone biosynthesis are unknown. Here, we conducted the first genome-wide survey of the bZIP gene family and analyzed the phylogeny, gene structure, additional conserved motifs and alternative splicing events in S. miltiorrhiza. A total of 70 SmbZIP transcription factors were identified and categorized into 11 subgroups based on their phylogenetic relationships with those in Arabidopsis. Moreover, seventeen SmbZIP genes underwent alternative splicing events. According to the transcriptomic data, the SmbZIP genes that were highly expressed in the Danshen root and periderm were selected. Based on the prediction of bZIP binding sites in the promoters and the co-expression analysis and co-induction patterns in response to Ag+ treatment via quantitative real-time polymerase chain reaction (qRT-PCR, we concluded that SmbZIP7 and SmbZIP20 potentially participate in the regulation of tanshinone biosynthesis. These results provide a foundation for further functional characterization of the candidate SmbZIP genes, which have the potential to increase tanshinone production. KEY WORDS: bZIP genes, Salvia miltiorrhiza, Phylogenetic analysis, Expression pattern analysis, Tanshinone biosynthesis

Polygonal-path approximations on the path spaces of quantum-mechanical systems: properties of the polygonal paths

International Nuclear Information System (INIS)

Exner, P.; Kolerov, G.I.

1981-01-01

Properties of the subset of polygonal paths in the Hilbert space H of paths referring to a d-dimensional quantum-mechanical system are examined. Using the reproduction kernel technique we prove that each element of H is approximated by polygonal paths uniformly with respect to the ''norm'' of time-interval partitions. This result will be applied in the second part of the present paper to prove consistency of the uniform polygonal-path extension of the Feynman maps [ru

A formational model for the polygonal terrains of Mars: Taking a crack at the genesis of the Martian polygons

Science.gov (United States)

Wenrich, M. L.; Christensen, P. R.

1993-01-01

The mechanism for the genesis of the polygonal terrains in Acidalia and Utopia Planitia has long been sought: however, no completely satisfying model was put forth that characterizes the evolution of these complexly patterned terrains. The polygons are roughly hexagonal but some are not entirely enclosed by fractures. These polygonal features range in widths from approximately 5 to 20 km. Several origins were proposed that describe the polygon borders as desiccation cracks, columnar jointing in a cooled lava, or frost-wedge features. These tension-induced cracking hypotheses were addressed by Pechmann, who convincingly disputes these mechanisms of formation based on scale magnitude difficulties and morphology. Pechmann suggests instead that the cracks delineating the 5-20-km-wide polygons on the northern plains of Mars are graben resulting from deep-seated, uniform, horizontal tension. The difficulty with this hypothesis is that no analogous polygonal forms are known to have originated by tectonism on Earth. McGill and Hills propose that the polygonal terrains on Mars resulted from either rapid desiccation of sediments or cooling of volcanics coupled with differential compaction of the material over a buried irregular topographic surface. They suggest that fracturing was enhanced over the areas of positive relief and was suppressed above the topographic lows. McGill and Hills suggest that the spacing of the topographic highs primarily controls the size of the Martian polygons and the physics of the shrinkage process is a secondary concern. Ray et. al. conducted a terrestrial study of patterned ground in periglacial areas of the U.S. to determine the process responsible for polygonal ground formation. They developed a model for polygon formation in which convection of seasonal melt water above a permafrost layer, driven by an unstable density stratification, differentially melts the permafrost interface, causing it to become undulatory.

Model for polygonal hydraulic jumps

DEFF Research Database (Denmark)

Martens, Erik Andreas; Watanabe, Shinya; Bohr, Tomas

2012-01-01

We propose a phenomenological model for the polygonal hydraulic jumps discovered by Ellegaard and co-workers [Nature (London) 392, 767 (1998); Nonlinearity 12, 1 (1999); Physica B 228, 1 (1996)], based on the known flow structure for the type-II hydraulic jumps with a "roller" (separation eddy...... nonhydrostatic pressure contributions from surface tension in light of recent observations by Bush and co-workers [J. Fluid Mech. 558, 33 (2006); Phys. Fluids 16, S4 (2004)]. The model can be analyzed by linearization around the circular state, resulting in a parameter relationship for nearly circular polygonal...... states. A truncated but fully nonlinear version of the model can be solved analytically. This simpler model gives rise to polygonal shapes that are very similar to those observed in experiments, even though surface tension is neglected, and the condition for the existence of a polygon with N corners...

A polygonal nodal SP3 method for whole core Pin-by-Pin neutronics calculation

Energy Technology Data Exchange (ETDEWEB)

Li, Yunzhao; Wu, Hongchun; Cao, Liangzhi, E-mail: xjtulyz@gmail.com, E-mail: hongchun@mail.xjtu.edu.cn, E-mail: caolz@mail.xjtu.edu.cn [School of Nuclear Science and Technology, Xi' an Jiaotong University, Shaanxi (China)

2011-07-01

In this polygonal nodal-SP3 method, neutron transport equation is transformed by employing an isotropic SP3 method into two coupled equations that are both in the same mathematic form with the diffusion equation, and then a polygonal nodal method is proposed to solve the two coupled equations. In the polygonal nodal method, adjacent nodes are coupled through partial currents, and a nodal response matrix between incoming and outgoing currents is obtained by expanding detailed nodal flux distribution into a sum of exponential functions. This method avoids the transverse integral technique, which is widely used in regular nodal method and can not be used in triangular geometry because of the mathematical singularity. It is demonstrated by the numerical results of the test problems that the k{sub eff} and power distribution agree well with other codes, the triangular nodal-SP3 method appears faster, and that whole core pin-by-pin transport calculation with fine meshes is feasible after parallelization and acceleration. (author)

Polygons and Craters

Science.gov (United States)

2005-01-01

3 September 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows polygons enhanced by subliming seasonal frost in the martian south polar region. Polygons similar to these occur in frozen ground at high latitudes on Earth, suggesting that perhaps their presence on Mars is also a sign that there is or once was ice in the shallow subsurface. The circular features are degraded meteor impact craters. Location near: 72.2oS, 310.3oW Image width: width: 3 km (1.9 mi) Illumination from: upper left Season: Southern Spring

A polygon-surface reference Korean male phantom (PSRK-Man) and its direct implementation in Geant4 Monte Carlo simulation

Energy Technology Data Exchange (ETDEWEB)

Kim, Chan Hyeong; Jeong, Jong Hwi [Department of Nuclear Engineering, Hanyang University, 17 Haengdang-dong, Seongdong-gu, Seoul 133-791 (Korea, Republic of); Bolch, Wesley E [Department of Nuclear and Radiological Engineering, University of Florida, Gainesville, FL 32611 (United States); Cho, Kun-Woo [Korea Institute of Nuclear Safety, 19 Guseong-dong, Yuseong-gu, Daejeon 305-600 (Korea, Republic of); Hwang, Sung Bae, E-mail: chkim@hanyang.ac.kr [Department of Physical Therapy, Kyungbuk College, Hyucheon 2-dong, Yeongju-si, Gyeongbuk 750-712 (Korea, Republic of)

2011-05-21

Even though the hybrid phantom embodies both the anatomic reality of voxel phantoms and the deformability of stylized phantoms, it must be voxelized to be used in a Monte Carlo code for dose calculation or some imaging simulation, which incurs the inherent limitations of voxel phantoms. In the present study, a voxel phantom named VKH-Man (Visible Korean Human-Man), was converted to a polygon-surface phantom (PSRK-Man, Polygon-Surface Reference Korean-Man), which was then adjusted to the Reference Korean data. Subsequently, the PSRK-Man polygon phantom was directly, without any voxelization process, implemented in the Geant4 Monte Carlo code for dose calculations. The calculated dose values and computation time were then compared with those of HDRK-Man (High Definition Reference Korean-Man), a corresponding voxel phantom adjusted to the same Reference Korean data from the same VKH-Man voxel phantom. Our results showed that the calculated dose values of the PSRK-Man surface phantom agreed well with those of the HDRK-Man voxel phantom. The calculation speed for the PSRK-Man polygon phantom though was 70-150 times slower than that of the HDRK-Man voxel phantom; that speed, however, could be acceptable in some applications, in that direct use of the surface phantom PSRK-Man in Geant4 does not require a separate voxelization process. Computing speed can be enhanced, in future, either by optimizing the Monte Carlo transport kernel for the polygon surfaces or by using modern computing technologies such as grid computing and general-purpose computing on graphics processing units programming.

A polygon-surface reference Korean male phantom (PSRK-Man) and its direct implementation in Geant4 Monte Carlo simulation

International Nuclear Information System (INIS)

Kim, Chan Hyeong; Jeong, Jong Hwi; Bolch, Wesley E; Cho, Kun-Woo; Hwang, Sung Bae

2011-01-01

Even though the hybrid phantom embodies both the anatomic reality of voxel phantoms and the deformability of stylized phantoms, it must be voxelized to be used in a Monte Carlo code for dose calculation or some imaging simulation, which incurs the inherent limitations of voxel phantoms. In the present study, a voxel phantom named VKH-Man (Visible Korean Human-Man), was converted to a polygon-surface phantom (PSRK-Man, Polygon-Surface Reference Korean-Man), which was then adjusted to the Reference Korean data. Subsequently, the PSRK-Man polygon phantom was directly, without any voxelization process, implemented in the Geant4 Monte Carlo code for dose calculations. The calculated dose values and computation time were then compared with those of HDRK-Man (High Definition Reference Korean-Man), a corresponding voxel phantom adjusted to the same Reference Korean data from the same VKH-Man voxel phantom. Our results showed that the calculated dose values of the PSRK-Man surface phantom agreed well with those of the HDRK-Man voxel phantom. The calculation speed for the PSRK-Man polygon phantom though was 70-150 times slower than that of the HDRK-Man voxel phantom; that speed, however, could be acceptable in some applications, in that direct use of the surface phantom PSRK-Man in Geant4 does not require a separate voxelization process. Computing speed can be enhanced, in future, either by optimizing the Monte Carlo transport kernel for the polygon surfaces or by using modern computing technologies such as grid computing and general-purpose computing on graphics processing units programming.

Tessellating the Sphere with Regular Polygons

Science.gov (United States)

Soto-Johnson, Hortensia; Bechthold, Dawn

2004-01-01

Tessellations in the Euclidean plane and regular polygons that tessellate the sphere are reviewed. The regular polygons that can possibly tesellate the sphere are spherical triangles, squares and pentagons.

Self-avoiding polygons and walks in slits

International Nuclear Information System (INIS)

Alvarez, J; Whittington, S G; Rensburg, E J Janse van; Soteros, C E

2008-01-01

A polymer in a confined geometry may be modeled by a self-avoiding walk or a self-avoiding polygon confined between two parallel walls. In two dimensions, this model involves self-avoiding walks or self-avoiding polygons in the square lattice between two parallel confining lines. Interactions of the polymer with the confining walls are introduced by energy terms associated with edges in the walk or polygon which are at or near the confining lines. We use transfer-matrix methods to investigate the forces between the walk or polygon and the confining lines, as well as to investigate the effects of the confining slit's width and of the energy terms on the thermodynamic properties of the walks or polygons in several models. The phase diagram found for the self-avoiding walk models is qualitatively similar to the phase diagram of a directed walk model confined between two parallel lines, as was previously conjectured. However, the phase diagram of one of our polygon models is found to be significantly different and we present numerical data to support this. For that particular model we prove that, for any finite values of the energy terms, there are an infinite number of slit widths where a polygon will induce a steric repulsion between the confining lines

Kink-free deformations of polygons

NARCIS (Netherlands)

Vegter, Gert

1989-01-01

We consider a discrete version of the Whitney-Graustein theorem concerning regular equivalence of closed curves. Two regular polygons P and P’, i.e. polygons without overlapping adjacent edges, are called regularly equivalent if there is a continuous one-parameter family Ps, 0 ≤ s ≤ 1, of regular

Conversion of ICRP male reference phantom to polygon-surface phantom

Science.gov (United States)

Yeom, Yeon Soo; Han, Min Cheol; Kim, Chan Hyeong; Jeong, Jong Hwi

2013-10-01

The International Commission on Radiological Protection (ICRP) reference phantoms, developed based on computed tomography images of human bodies, provide much more realism of human anatomy than the previously used MIRD5 (Medical Internal Radiation Dose) mathematical phantoms. It has been, however, realized that the ICRP reference phantoms have some critical limitations showing a considerable amount of holes for the skin and wall organs mainly due to the nature of voxels of which the phantoms are made, especially due to their low voxel resolutions. To address this problem, we are planning to develop the polygon-surface version of ICRP reference phantoms by directly converting the ICRP reference phantoms (voxel phantoms) to polygon-surface phantoms. The objective of this preliminary study is to see if it is indeed possible to construct the high-quality polygon-surface phantoms based on the ICRP reference phantoms maintaining identical organ morphology and also to identify any potential issues, and technologies to address these issues, in advance. For this purpose, in the present study, the ICRP reference male phantom was roughly converted to a polygon-surface phantom. Then, the constructed phantom was implemented in Geant4, Monte Carlo particle transport code, for dose calculations, and the calculated dose values were compared with those of the original ICRP reference phantom to see how much the calculated dose values are sensitive to the accuracy of the conversion process. The results of the present study show that it is certainly possible to convert the ICRP reference phantoms to surface phantoms with enough accuracy. In spite of using relatively less resources (original ICRP reference phantoms, it is believed that the polygon-surface version of ICRP reference phantoms properly developed will not only provide the same or similar dose values (say, difference <5 or 10%) for highly penetrating radiations, but also provide correct dose values for the weakly penetrating

Dilation-optimal edge deletion in polygonal cycles

NARCIS (Netherlands)

Ahn, H.K.; Farshi, M.; Knauer, C.; Smid, M.H.M.; Wang, Y.; Tokuyama, T.

2007-01-01

Let C be a polygonal cycle on n vertices in the plane. A randomized algorithm is presented which computes in O(n log3 n) expected time, the edge of C whose removal results in a polygonal path of smallest possible dilation. It is also shown that the edge whose removal gives a polygonal path of

Separable Crossover-Promoting and Crossover-Constraining Aspects of Zip1 Activity during Budding Yeast Meiosis.

Directory of Open Access Journals (Sweden)

Karen Voelkel-Meiman

2015-06-01

Full Text Available Accurate chromosome segregation during meiosis relies on the presence of crossover events distributed among all chromosomes. MutSγ and MutLγ homologs (Msh4/5 and Mlh1/3 facilitate the formation of a prominent group of meiotic crossovers that mature within the context of an elaborate chromosomal structure called the synaptonemal complex (SC. SC proteins are required for intermediate steps in the formation of MutSγ-MutLγ crossovers, but whether the assembled SC structure per se is required for MutSγ-MutLγ-dependent crossover recombination events is unknown. Here we describe an interspecies complementation experiment that reveals that the mature SC is dispensable for the formation of Mlh3-dependent crossovers in budding yeast. Zip1 forms a major structural component of the budding yeast SC, and is also required for MutSγ and MutLγ-dependent crossover formation. Kluyveromyces lactis ZIP1 expressed in place of Saccharomyces cerevisiae ZIP1 in S. cerevisiae cells fails to support SC assembly (synapsis but promotes wild-type crossover levels in those nuclei that progress to form spores. While stable, full-length SC does not assemble in S. cerevisiae cells expressing K. lactis ZIP1, aggregates of K. lactis Zip1 displayed by S. cerevisiae meiotic nuclei are decorated with SC-associated proteins, and K. lactis Zip1 promotes the SUMOylation of the SC central element protein Ecm11, suggesting that K. lactis Zip1 functionally interfaces with components of the S. cerevisiae synapsis machinery. Moreover, K. lactis Zip1-mediated crossovers rely on S. cerevisiae synapsis initiation proteins Zip3, Zip4, Spo16, as well as the Mlh3 protein, as do the crossovers mediated by S. cerevisiae Zip1. Surprisingly, however, K. lactis Zip1-mediated crossovers are largely Msh4/Msh5 (MutSγ-independent. This separation-of-function version of Zip1 thus reveals that neither assembled SC nor MutSγ is required for Mlh3-dependent crossover formation per se in budding yeast

Generating random walks and polygons with stiffness in confinement

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Saarinen, S; Ziegler, U

2015-01-01

The purpose of this paper is to explore ways to generate random walks and polygons in confinement with a bias toward stiffness. Here the stiffness refers to the curvature angle between two consecutive edges along the random walk or polygon. The stiffer the walk (polygon), the smaller this angle on average. Thus random walks and polygons with an elevated stiffness have lower than expected curvatures. The authors introduced and studied several generation algorithms with a stiffness parameter s>0 that regulates the expected curvature angle at a given vertex in which the random walks and polygons are generated one edge at a time using conditional probability density functions. Our generating algorithms also allow the generation of unconfined random walks and polygons with any desired mean curvature angle. In the case of random walks and polygons confined in a sphere of fixed radius, we observe that, as expected, stiff random walks or polygons are more likely to be close to the confinement boundary. The methods developed here require that the random walks and random polygons be rooted at the center of the confinement sphere. (paper)

Hepatic ZIP14-mediated zinc transport is required for adaptation to endoplasmic reticulum stress.

Science.gov (United States)

Kim, Min-Hyun; Aydemir, Tolunay B; Kim, Jinhee; Cousins, Robert J

2017-07-18

Extensive endoplasmic reticulum (ER) stress damages the liver, causing apoptosis and steatosis despite the activation of the unfolded protein response (UPR). Restriction of zinc from cells can induce ER stress, indicating that zinc is essential to maintain normal ER function. However, a role for zinc during hepatic ER stress is largely unknown despite important roles in metabolic disorders, including obesity and nonalcoholic liver disease. We have explored a role for the metal transporter ZIP14 during pharmacologically and high-fat diet-induced ER stress using Zip14 -/- (KO) mice, which exhibit impaired hepatic zinc uptake. Here, we report that ZIP14-mediated hepatic zinc uptake is critical for adaptation to ER stress, preventing sustained apoptosis and steatosis. Impaired hepatic zinc uptake in Zip14 KO mice during ER stress coincides with greater expression of proapoptotic proteins. ER stress-induced Zip14 KO mice show greater levels of hepatic steatosis due to higher expression of genes involved in de novo fatty acid synthesis, which are suppressed in ER stress-induced WT mice. During ER stress, the UPR-activated transcription factors ATF4 and ATF6α transcriptionally up-regulate Zip14 expression. We propose ZIP14 mediates zinc transport into hepatocytes to inhibit protein-tyrosine phosphatase 1B (PTP1B) activity, which acts to suppress apoptosis and steatosis associated with hepatic ER stress. Zip14 KO mice showed greater hepatic PTP1B activity during ER stress. These results show the importance of zinc trafficking and functional ZIP14 transporter activity for adaptation to ER stress associated with chronic metabolic disorders.

Automatically repairing invalid polygons with a constrained triangulation

NARCIS (Netherlands)

Ledoux, H.; Arroyo Ohori, K.; Meijers, M.

2012-01-01

Although the validation of single polygons has received considerable attention, the automatic repair of invalid polygons has not. Automated repair methods can be considered as interpreting ambiguous or ill-defined polygons and giving a coherent and clearly defined output. At this moment, automatic

Generating equilateral random polygons in confinement II

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Montemayor, A; Ziegler, U

2012-01-01

In this paper we continue an earlier study (Diao et al 2011 J. Phys. A: Math. Theor. 44 405202) on the generation algorithms of random equilateral polygons confined in a sphere. Here, the equilateral random polygons are rooted at the center of the confining sphere and the confining sphere behaves like an absorbing boundary. One way to generate such a random polygon is the accept/reject method in which an unconditioned equilateral random polygon rooted at origin is generated. The polygon is accepted if it is within the confining sphere, otherwise it is rejected and the process is repeated. The algorithm proposed in this paper offers an alternative to the accept/reject method, yielding a faster generation process when the confining sphere is small. In order to use this algorithm effectively, a large, reusable data set needs to be pre-computed only once. We derive the theoretical distribution of the given random polygon model and demonstrate, with strong numerical evidence, that our implementation of the algorithm follows this distribution. A run time analysis and a numerical error estimate are given at the end of the paper. (paper)

Does a point lie inside a polygon

International Nuclear Information System (INIS)

Milgram, M.S.

1988-01-01

A superficially simple problem in computational geometry is that of determining whether a query point P lies in the interior of a polygon if it lies in the polygon's plane. Answering this question is often required when tracking particles in a Monte Carlo program; it is asked frequently and an efficient algorithm is crucial. Littlefield has recently rediscovered Shimrat's algorithm, while in separate works, Wooff, Preparata and Shamos and Mehlhorn, as well as Yamaguchi, give other algorithms. A practical algorithm answering this question when the polygon's plane is skewed in space is not immediately evident from most of these methods. Additionally, all but one fails when two sides extend to infinity (open polygons). In this paper the author review the above methods and present a new, efficient algorithm, valid for all convex polygons, open or closed, and topologically connected in n-dimensional space (n ≥ 2)

Genome-wide analysis of the homeodomain-leucine zipper (HD-ZIP) gene family in peach (Prunus persica).

Science.gov (United States)

Zhang, C H; Ma, R J; Shen, Z J; Sun, X; Korir, N K; Yu, M L

2014-04-08

In this study, 33 homeodomain-leucine zipper (HD-ZIP) genes were identified in peach using the HD-ZIP amino acid sequences of Arabidopsis thaliana as a probe. Based on the phylogenetic analysis and the individual gene or protein characteristics, the HD-ZIP gene family in peach can be classified into 4 subfamilies, HD-ZIP I, II, III, and IV, containing 14, 7, 4, and 8 members, respectively. The most closely related peach HD-ZIP members within the same subfamilies shared very similar gene structure in terms of either intron/exon numbers or lengths. Almost all members of the same subfamily shared common motif compositions, thereby implying that the HD-ZIP proteins within the same subfamily may have functional similarity. The 33 peach HD-ZIP genes were distributed across scaffolds 1 to 7. Although the primary structure varied among HD-ZIP family proteins, their tertiary structures were similar. The results from this study will be useful in selecting candidate genes from specific subfamilies for functional analysis.

Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus.

Science.gov (United States)

Zhou, Yan; Xu, Daixiang; Jia, Ledong; Huang, Xiaohu; Ma, Guoqiang; Wang, Shuxian; Zhu, Meichen; Zhang, Aoxiang; Guan, Mingwei; Lu, Kun; Xu, Xinfu; Wang, Rui; Li, Jiana; Qu, Cunmin

2017-10-24

The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed ( Brassica napus ). In this study, we identified 247 BnbZIP genes in the rapeseed genome, which we classified into 10 subfamilies based on phylogenetic analysis of their deduced protein sequences. The BnbZIP genes were grouped into functional clades with Arabidopsis genes with similar putative functions, indicating functional conservation. Genome mapping analysis revealed that the BnbZIPs are distributed unevenly across all 19 chromosomes, and that some of these genes arose through whole-genome duplication and dispersed duplication events. All expression profiles of 247 bZIP genes were extracted from RNA-sequencing data obtained from 17 different B . napus ZS11 tissues with 42 various developmental stages. These genes exhibited different expression patterns in various tissues, revealing that these genes are differentially regulated. Our results provide a valuable foundation for functional dissection of the different BnbZIP homologs in B . napus and its parental lines and for molecular breeding studies of bZIP genes in B . napus .

BLM National Surface Management Agency: Area Polygons, Withdrawal Area Polygons, and Special Public Purpose Withdrawal Area Polygons

Data.gov (United States)

Federal Geographic Data Committee — The SMA implementation is comprised of one feature dataset, with several polygon feature classes, rather than a single feature class. SurfaceManagementAgency: The...

bZIPs and WRKYs: two large transcription factor families executing two different functional strategies

Directory of Open Access Journals (Sweden)

Carles eMarco Llorca

2014-04-01

Full Text Available bZIPs and WRKYs are two important plant transcription factor families regulating diverse developmental and stress-related processes. Since a partial overlap in these biological processes is obvious, it can be speculated that they fulfill non-redundant functions in a complex regulatory network. Here, we focus on the regulatory mechanisms that are so far described for bZIPs and WRKYs. bZIP factors need to heterodimerize for DNA-binding and regulation of transcription, and based on a bioinformatics approach, bZIPs can build up more than the double of protein interactions than WRKYs. In contrast, an enrichment of the WRKY DNA-binding motifs can be found in WRKY promoters, a phenomenon which is not observed for the bZIP family. Thus, the two transcription factor families follow two different functional strategies in which WRKYs regulate each other’s transcription in a transcriptional network whereas bZIP action relies on intensive heterodimerization.

Casimir effect in hyperbolic polygons

International Nuclear Information System (INIS)

Ahmedov, H

2007-01-01

Using the point splitting regularization method and the trace formula for the spectra of quantum-mechanical systems in hyperbolic polygons which are the fundamental domains of discrete isometry groups acting in the two-dimensional hyperboloid we calculate the Casimir energy for massless scalar fields in hyperbolic polygons. The dependence of the vacuum energy on the number of vertices is established

Linking of uniform random polygons in confined spaces

International Nuclear Information System (INIS)

Arsuaga, J; Blackstone, T; Diao, Y; Karadayi, E; Saito, M

2007-01-01

In this paper, we study the topological entanglement of uniform random polygons in a confined space. We derive the formula for the mean squared linking number of such polygons. For a fixed simple closed curve in the confined space, we rigorously show that the linking probability between this curve and a uniform random polygon of n vertices is at least 1-O(1/√n). Our numerical study also indicates that the linking probability between two uniform random polygons (in a confined space), of m and n vertices respectively, is bounded below by 1-O(1/√(mn)). In particular, the linking probability between two uniform random polygons, both of n vertices, is bounded below by 1-O(1/n)

ZipA binds to FtsZ with high affinity and enhances the stability of FtsZ protofilaments.

Directory of Open Access Journals (Sweden)

Anuradha Kuchibhatla

Full Text Available A bacterial membrane protein ZipA that tethers FtsZ to the membrane is known to promote FtsZ assembly. In this study, the binding of ZipA to FtsZ was monitored using fluorescence spectroscopy. ZipA was found to bind to FtsZ with high affinities at three different (6.0, 6.8 and 8.0 pHs, albeit the binding affinity decreased with increasing pH. Further, thick bundles of FtsZ protofilaments were observed in the presence of ZipA under the pH conditions used in this study indicating that ZipA can promote FtsZ assembly and stabilize FtsZ polymers under unfavorable conditions. Bis-ANS, a hydrophobic probe, decreased the interaction of FtsZ and ZipA indicating that the interaction between FtsZ and ZipA is hydrophobic in nature. ZipA prevented the dilution induced disassembly of FtsZ polymers suggesting that it stabilizes FtsZ protofilaments. Fluorescein isothiocyanate-labeled ZipA was found to be uniformly distributed along the length of the FtsZ protofilaments indicating that ZipA stabilizes FtsZ protofilaments by cross-linking them.

From Newton's bucket to rotating polygons

DEFF Research Database (Denmark)

Bach, B.; Linnartz, E. C.; Vested, Malene Louise Hovgaard

2014-01-01

We present an experimental study of 'polygons' forming on the free surface of a swirling water flow in a partially filled cylindrical container. In our set-up, we rotate the bottom plate and the cylinder wall with separate motors. We thereby vary rotation rate and shear strength independently...... and move from a rigidly rotating 'Newton's bucket' flow to one where bottom and cylinder wall are rotating oppositely and the surface is strongly turbulent but flat on average. Between those two extremes, we find polygonal states for which the rotational symmetry is spontaneously broken. We investigate...... the phase diagram spanned by the two rotational frequencies at a given water filling height and find polygons in a regime, where the two frequencies are sufficiently different and, predominantly, when they have opposite signs. In addition to the extension of the family of polygons found with the stationary...

Theory on the Mechanism of DNA Renaturation: Stochastic Nucleation and Zipping.

Directory of Open Access Journals (Sweden)

Gnanapragasam Niranjani

Full Text Available Renaturation of the complementary single strands of DNA is one of the important processes that requires better understanding in the view of molecular biology and biological physics. Here we develop a stochastic dynamical model on the DNA renaturation. According to our model there are at least three steps in the renaturation process viz. nonspecific-contact formation, correct-contact formation and nucleation, and zipping. Most of the earlier two-state models combined nucleation with nonspecific-contact formation step. In our model we suggest that it is considerably meaningful when we combine the nucleation with the zipping since nucleation is the initial step of zipping and nucleated and zipping molecules are indistinguishable. Nonspecific contact formation step is a pure three-dimensional diffusion controlled collision process. Whereas nucleation involves several rounds of one-dimensional slithering and internal displacement dynamics of one single strand of DNA on the other complementary strand in the process of searching for the correct-contact and then initiate nucleation. Upon nucleation, the stochastic zipping follows to generate a fully renatured double stranded DNA. It seems that the square-root dependency of the overall renaturation rate constant on the length of reacting single strands originates mainly from the geometric constraints in the diffusion controlled nonspecific-contact formation step. Further the inverse scaling of the renaturation rate on the viscosity of reaction medium also originates from nonspecific contact formation step. On the other hand the inverse scaling of the renaturation rate with the sequence complexity originates from the stochastic zipping which involves several rounds of crossing over the free-energy barrier at microscopic levels. When the sequence of renaturing single strands of DNA is repetitive with less complexity then the cooperative effects will not be noticeable since the parallel zipping will be a

Slc39a7/zip7 plays a critical role in development and zinc homeostasis in zebrafish.

Directory of Open Access Journals (Sweden)

Guang Yan

Full Text Available BACKGROUND: Slc39a7/Zip7, also known as Ke4, is a member of solute carrier family 39 (Slc39a and plays a critical role in regulating cell growth and death. Because the function of Zip7 in vivo was unclear, the present study investigated the function of zip7 in vertebrate development and zinc metabolism using zebrafish as a model organism. PRINCIPAL FINDING: Using real-time PCR to determine the gene expression pattern of zip7 during zebrafish development, we found that zip7 mRNA is expressed throughout embryonic development and into maturity. Interestingly, whole mount in situ hybridization revealed that while zip7 mRNA is ubiquitously expressed until 12 hours post-fertilization (hpf; at 24 hpf and beyond, zip7 mRNA was specifically detected only in eyes. Morpholino-antisense (MO gene knockdown assay revealed that downregulation of zip7 expression resulted in several morphological defects in zebrafish including decreased head size, smaller eyes, shorter palates, and shorter and curved spinal cords. Analysis by synchrotron radiation X-ray fluorescence (SR-XRF showed reduced concentrations of zinc in brain, eyes, and gills of zip7-MO-injected embryos. Furthermore, incubation of the zip7 knockdown embryos in a zinc-supplemented solution was able to rescue the MO-induced morphological defects. SIGNIFICANCE: Our data suggest that zip7 is required for eye, brain, and skeleton formation during early embryonic development in zebrafish. Moreover, zinc supplementation can partially rescue defects resulting from zip7 gene knockdown. Taken together, our data provide critical insight into a novel function of zip7 in development and zinc homeostasis in vivo in zebrafish.

Polygons on a rotating fluid surface

DEFF Research Database (Denmark)

Jansson, Thomas R.N.; Haspang, Martin P.; Jensen, Kåre H.

2006-01-01

We report a novel and spectacular instability of a fluid surface in a rotating system. In a flow driven by rotating the bottom plate of a partially filled, stationary cylindrical container, the shape of the free surface can spontaneously break the axial symmetry and assume the form of a polygon...... rotating rigidly with a speed different from that of the plate. With water, we have observed polygons with up to 6 corners. It has been known for many years that such flows are prone to symmetry breaking, but apparently the polygonal surface shapes have never been observed. The creation of rotating...

Generating equilateral random polygons in confinement

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Montemayor, A; Ziegler, U

2011-01-01

One challenging problem in biology is to understand the mechanism of DNA packing in a confined volume such as a cell. It is known that confined circular DNA is often knotted and hence the topology of the extracted (and relaxed) circular DNA can be used as a probe of the DNA packing mechanism. However, in order to properly estimate the topological properties of the confined circular DNA structures using mathematical models, it is necessary to generate large ensembles of simulated closed chains (i.e. polygons) of equal edge lengths that are confined in a volume such as a sphere of certain fixed radius. Finding efficient algorithms that properly sample the space of such confined equilateral random polygons is a difficult problem. In this paper, we propose a method that generates confined equilateral random polygons based on their probability distribution. This method requires the creation of a large database initially. However, once the database has been created, a confined equilateral random polygon of length n can be generated in linear time in terms of n. The errors introduced by the method can be controlled and reduced by the refinement of the database. Furthermore, our numerical simulations indicate that these errors are unbiased and tend to cancel each other in a long polygon. (paper)

Linking of uniform random polygons in confined spaces

Science.gov (United States)

Arsuaga, J.; Blackstone, T.; Diao, Y.; Karadayi, E.; Saito, M.

2007-03-01

In this paper, we study the topological entanglement of uniform random polygons in a confined space. We derive the formula for the mean squared linking number of such polygons. For a fixed simple closed curve in the confined space, we rigorously show that the linking probability between this curve and a uniform random polygon of n vertices is at least 1-O\\big(\\frac{1}{\\sqrt{n}}\\big) . Our numerical study also indicates that the linking probability between two uniform random polygons (in a confined space), of m and n vertices respectively, is bounded below by 1-O\\big(\\frac{1}{\\sqrt{mn}}\\big) . In particular, the linking probability between two uniform random polygons, both of n vertices, is bounded below by 1-O\\big(\\frac{1}{n}\\big) .

Zinc transporter ZIP14 functions in hepatic zinc, iron and glucose homeostasis during the innate immune response (endotoxemia.

Directory of Open Access Journals (Sweden)

Tolunay Beker Aydemir

Full Text Available ZIP14 (slc39A14 is a zinc transporter induced in response to pro-inflammatory stimuli. ZIP14 induction accompanies the reduction in serum zinc (hypozincemia of acute inflammation. ZIP14 can transport Zn(2+ and non-transferrin-bound Fe(2+ in vitro. Using a Zip14(-/- mouse model we demonstrated that ZIP14 was essential for control of phosphatase PTP1B activity and phosphorylation of c-Met during liver regeneration. In the current studies, a global screening of ZIP transporter gene expression in response to LPS-induced endotoxemia was conducted. Following LPS, Zip14 was the most highly up-regulated Zip transcript in liver, but also in white adipose tissue and muscle. Using ZIP14(-/- mice we show that ZIP14 contributes to zinc absorption from the gastrointestinal tract directly or indirectly as zinc absorption was decreased in the KOs. In contrast, Zip14(-/- mice absorbed more iron. The Zip14 KO mice did not exhibit hypozincemia following LPS, but do have hypoferremia. Livers of Zip14-/- mice had increased transcript abundance for hepcidin, divalent metal transporter-1, ferritin and transferrin receptor-1 and greater accumulation of iron. The Zip14(-/- phenotype included greater body fat, hypoglycemia and higher insulin levels, as well as increased liver glucose and greater phosphorylation of the insulin receptor and increased GLUT2, SREBP-1c and FASN expression. The Zip14 KO mice exhibited decreased circulating IL-6 with increased hepatic SOCS-3 following LPS, suggesting SOCS-3 inhibited insulin signaling which produced the hypoglycemia in this genotype. The results are consistent with ZIP14 ablation yielding abnormal labile zinc pools which lead to increased SOCS-3 production through G-coupled receptor activation and increased cAMP production as well as signaled by increased pSTAT3 via the IL-6 receptor, which inhibits IRS 1/2 phosphorylation. Our data show the role of ZIP14 in the hepatocyte is multi-functional since zinc and iron trafficking are

A novel bZIP gene from Tamarix hispida mediates physiological responses to salt stress in tobacco plants.

Science.gov (United States)

Wang, Yucheng; Gao, Caiqiu; Liang, Yenan; Wang, Chao; Yang, Chuanping; Liu, Guifeng

2010-02-15

Basic leucine zipper proteins (bZIPs) are transcription factors that bind abscisic acid (ABA)-responsive elements (ABREs) and enable plants to withstand adverse environmental conditions. In the present study, a novel bZIP gene, ThbZIP1 was cloned from Tamarix hispida. Expression studies in T. hispida showed differential regulation of ThbZIP1 in response to treatment with NaCl, polyethylene glycol (PEG) 6000, NaHCO(3), and CdCl(2), suggesting that ThbZIP1 is involved in abiotic stress responses. To identify the physiological responses mediated by ThbZIP1, transgenic tobacco plants overexpressing exogenous ThbZIP1 were generated. Various physiological parameters related to salt stress were measured and compared between transgenic and wild type (WT) plants. Our results indicate that overexpression of ThbZIP1 can enhance the activity of both peroxidase (POD) and superoxide dismutase (SOD), and increase the content of soluble sugars and soluble proteins under salt stress conditions. These results suggest that ThbZIP1 contributes to salt tolerance by mediating signaling through multiple physiological pathways. Furthermore, ThbZIP1 confers stress tolerance to plants by enhancing reactive oxygen species (ROS) scavenging, facilitating the accumulation of compatible osmolytes, and inducing and/or enhancing the biosynthesis of soluble proteins. Copyright 2009 Elsevier GmbH. All rights reserved.

Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants

DEFF Research Database (Denmark)

Castro, Pedro Humberto Araújo R F; Lilay, Grmay Hailu; Muñoz-Mérida, Antonio

2017-01-01

Basic leucine zipper (bZIP) transcription factors control important developmental and physiological processes in plants. In Arabidopsis thaliana, the three gene F-bZIP subfamily has been associated with zinc deficiency and salt stress response. Benefiting from the present abundance of plant genomic...... data, we performed an evolutionary and structural characterization of plant F-bZIPs. We observed divergence during seed plant evolution, into two groups and inferred different selective pressures for each. Group 1 contains AtbZIP19 and AtbZIP23 and appears more conserved, whereas Group 2, containing...... of AtZIP4. A survey of AtZIP4 orthologs promoters across different plant taxa revealed an enrichment of the Zinc Deficiency Response Element (ZDRE) to which both AtbZIP19/23 bind. Overall, our results indicate that while the AtbZIP24 function in the regulation of the salt stress response may...

Conversion of ICRP male reference phantom to polygon-surface phantom

International Nuclear Information System (INIS)

Yeom, Yeon Soo; Han, Min Cheol; Kim, Chan Hyeong; Jeong, Jong Hwi

2013-01-01

The International Commission on Radiological Protection (ICRP) reference phantoms, developed based on computed tomography images of human bodies, provide much more realism of human anatomy than the previously used MIRD5 (Medical Internal Radiation Dose) mathematical phantoms. It has been, however, realized that the ICRP reference phantoms have some critical limitations showing a considerable amount of holes for the skin and wall organs mainly due to the nature of voxels of which the phantoms are made, especially due to their low voxel resolutions. To address this problem, we are planning to develop the polygon-surface version of ICRP reference phantoms by directly converting the ICRP reference phantoms (voxel phantoms) to polygon-surface phantoms. The objective of this preliminary study is to see if it is indeed possible to construct the high-quality polygon-surface phantoms based on the ICRP reference phantoms maintaining identical organ morphology and also to identify any potential issues, and technologies to address these issues, in advance. For this purpose, in the present study, the ICRP reference male phantom was roughly converted to a polygon-surface phantom. Then, the constructed phantom was implemented in Geant4, Monte Carlo particle transport code, for dose calculations, and the calculated dose values were compared with those of the original ICRP reference phantom to see how much the calculated dose values are sensitive to the accuracy of the conversion process. The results of the present study show that it is certainly possible to convert the ICRP reference phantoms to surface phantoms with enough accuracy. In spite of using relatively less resources (<2 man-months), we were able to construct the polygon-surface phantom with the organ masses perfectly matching the ICRP reference values. The analysis of the calculated dose values also implies that the dose values are indeed not very sensitive to the detailed morphology of the organ models in the phantom

ZIP MK 2 : A Fortran code for calculating the eigenvalues (poles and zeros and frequency responses of large sets of linear equations representing complex dynamic systems)

International Nuclear Information System (INIS)

Sumner, H.M.

1969-03-01

The KDF9/EGDON program ZIP MK 2 is the third of a series of programs for off-line digital computer analysis of dynamic systems: it has been designed specifically to cater for the needs of the design or control engineer in having an input scheme which is minimally computer-oriented. It uses numerical algorithms which are as near fool-proof as the author could discover or devise, and has comprehensive diagnostic sections to help the user in the event of faulty data or machine execution. ZIP MK 2 accepts mathematical models comprising first order linear differential and linear algebraic equations, and from these computes and factorises the transfer functions between specified pairs of output and input variables; if desired, the frequency response may be computed from the computed transfer function. The model input scheme is fully compatible with the frequency response programs FRP MK 1 and MK 2, except that, for ZIP MK 2, transport, or time-delays must be converted by the user to Pade or Bode approximations prior to input. ZIP provides the pole-zero plot, (or complex plane analysis), while FRP provides the frequency response and FIFI the time domain analyses. The pole-zero method of analysis has been little used in the past for complex models, especially where transport delays occur, and one of its primary purposes is as a research tool to investigate the usefulness of this method, for process plant, whether nuclear, chemical or other continuous processes. (author)

A model of competing species that exhibits zip bifurcation

Directory of Open Access Journals (Sweden)

Luis F. Echeverri

2017-01-01

Full Text Available El objetivo de este trabajo es presentar un modelo concreto d e poblaciones de especies en competición que exhibe la bifurc ación Zip. La bifurcación zip fue introducida por Farkas en 1984 para un si stema tridi- mensional de ecuaciones diferenciales ordinarias que desc ribe un quimiostato. Estudiaremos un sistema tridimensional de ecuaciones dife renciales ordinarias que modela la competición de dos poblaciones distintas de pr edadores por una única población presa. El sistema usa funciones trigonomét ricas concretas pa- ra representar la tasa de crecimiento de la presa y la respues ta funcional del predador. El modelo exhibe diferentes clases de comportami entos y muestra ejemplos de los llamados principio de exclusión competitiva y la competición de un r-estratega contra un k-estratega . Adicionalmente, para ilustrar la bi- furcacion zip, presentaremos algunas simulaciones numéri cas.

Probing convex polygons with X-rays

International Nuclear Information System (INIS)

Edelsbrunner, H.; Skiena, S.S.

1988-01-01

An X-ray probe through a polygon measures the length of intersection between a line and the polygon. This paper considers the properties of various classes of X-ray probes, and shows how they interact to give finite strategies for completely describing convex n-gons. It is shown that (3n/2)+6 probes are sufficient to verify a specified n-gon, while for determining convex polygons (3n-1)/2 X-ray probes are necessary and 5n+O(1) sufficient, with 3n+O(1) sufficient given that a lower bound on the size of the smallest edge of P is known

Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.).

Science.gov (United States)

Li, Dayong; Fu, Fuyou; Zhang, Huijuan; Song, Fengming

2015-10-12

Transcription factors of the basic leucine zipper (bZIP) family represent exclusively in eukaryotes and have been shown to regulate diverse biological processes in plant growth and development as well as in abiotic and biotic stress responses. However, little is known about the bZIP family in tomato (Solanum lycopersicum L.). The SlbZIP genes were identified using local BLAST and hidden Markov model profile searches. The phylogenetic trees, conserved motifs and gene structures were generated by MEGA6.06, MEME tool and gene Structure Display Server, respectively. The syntenic block diagrams were generated by the Circos software. The transcriptional gene expression profiles were obtained using Genevestigator tool and quantitative RT-PCR. In the present study, we carried out a genome-wide identification and systematic analyses of 69 SlbZIP genes that distributes unevenly on the tomato chromosomes. This family can be divided into 9 groups according to the phylogenetic relationship among the SlbZIP proteins. Six kinds of intron patterns (a-f) within the basic and hinge regions are defined. The additional conserved motifs and their presence of the group specificity were also identified. Further, we predicted the DNA-binding patterns and the dimerization property on the basis of the characteristic features in the basic and hinge regions and the leucine zipper, respectively, which supports our classification greatly and helps to classify 24 distinct subfamilies. Within the SlbZIP family, a total of 40 SlbZIP genes are located in the segmental duplicate regions in the tomato genome, suggesting that the segment chromosomal duplications contribute greatly to the expansion of the tomato SlbZIP family. Expression profiling analyses of 59 SlbZIP genes using quantitative RT-PCR and publicly available microarray data indicate that the tomato SlbZIP genes have distinct and diverse expression patterns in different tissues and developmental stages and many of the tomato bZIP genes

Using Wireless Pedometers to Measure Children’s Physical Activity: How Reliable is the Fitbit Zip?

Directory of Open Access Journals (Sweden)

Tingting Xu

2017-07-01

Full Text Available The purpose of this study is to examine the reliability of wireless pedometers in measuring elementary school children’s physical activity. Activity measurement using a wireless pedometer Fitbit ZipTM was compared to activity measurement using Yamax Digi-WalkerTM SW701 for a group of randomly selected 25 children in Grades 3, 4, and 5. Fitbit ZipTM wireless pedometers were found to have an appropriate degree (Nunnally & Bernstein, 1994 of accuracy and reliability compared to the Yamax Digi-WalkerTM SW701 pedometer. The Fitbit ZipTM wireless pedometer collected more step counts than the Yamax Digi-WalkerTM SW701 pedometer; however, the difference was not statistically significant. Participants reported that they preferred wearing the Fitbit ZipTM to the Yamax Digi-WalkerTM SW701 because the Fitbit ZipTM was more comfortable to wear and less likely to fall off. Participants also reported being more motivated to move while wearing the Fitbit ZipTM.

Comic image understanding based on polygon detection

Science.gov (United States)

Li, Luyuan; Wang, Yongtao; Tang, Zhi; Liu, Dong

2013-01-01

Comic image understanding aims to automatically decompose scanned comic page images into storyboards and then identify the reading order of them, which is the key technique to produce digital comic documents that are suitable for reading on mobile devices. In this paper, we propose a novel comic image understanding method based on polygon detection. First, we segment a comic page images into storyboards by finding the polygonal enclosing box of each storyboard. Then, each storyboard can be represented by a polygon, and the reading order of them is determined by analyzing the relative geometric relationship between each pair of polygons. The proposed method is tested on 2000 comic images from ten printed comic series, and the experimental results demonstrate that it works well on different types of comic images.

Minimal knotted polygons in cubic lattices

International Nuclear Information System (INIS)

Van Rensburg, E J Janse; Rechnitzer, A

2011-01-01

In this paper we examine numerically the properties of minimal length knotted lattice polygons in the simple cubic, face-centered cubic, and body-centered cubic lattices by sieving minimal length polygons from a data stream of a Monte Carlo algorithm, implemented as described in Aragão de Carvalho and Caracciolo (1983 Phys. Rev. B 27 1635), Aragão de Carvalho et al (1983 Nucl. Phys. B 215 209) and Berg and Foester (1981 Phys. Lett. B 106 323). The entropy, mean writhe, and mean curvature of minimal length polygons are computed (in some cases exactly). While the minimal length and mean curvature are found to be lattice dependent, the mean writhe is found to be only weakly dependent on the lattice type. Comparison of our results to numerical results for the writhe obtained elsewhere (see Janse van Rensburg et al 1999 Contributed to Ideal Knots (Series on Knots and Everything vol 19) ed Stasiak, Katritch and Kauffman (Singapore: World Scientific), Portillo et al 2011 J. Phys. A: Math. Theor. 44 275004) shows that the mean writhe is also insensitive to the length of a knotted polygon. Thus, while these results for the mean writhe and mean absolute writhe at minimal length are not universal, our results demonstrate that these values are quite close the those of long polygons regardless of the underlying lattice and length

Computing nonsimple polygons of minimum perimeter

NARCIS (Netherlands)

Fekete, S.P.; Haas, A.; Hemmer, M.; Hoffmann, M.; Kostitsyna, I.; Krupke, D.; Maurer, F.; Mitchell, J.S.B.; Schmidt, A.; Schmidt, C.; Troegel, J.

2018-01-01

We consider the Minimum Perimeter Polygon Problem (MP3): for a given set V of points in the plane, find a polygon P with holes that has vertex set V , such that the total boundary length is smallest possible. The MP3 can be considered a natural geometric generalization of the Traveling Salesman

Salt and drought stress and ABA responses related to bZIP genes from V. radiata and V. angularis.

Science.gov (United States)

Wang, Lanfen; Zhu, Jifeng; Li, Xiaoming; Wang, Shumin; Wu, Jing

2018-04-20

Mung bean and adzuki bean are warm-season legumes widely cultivated in China. However, bean production in major producing regions is limited by biotic and abiotic stress, such as drought and salt stress. Basic leucine zipper (bZIP) genes play key roles in responses to various biotic and abiotic stresses. However, only several bZIP genes involved in drought and salt stress in legumes, especially Vigna radiata and Vigna angularis, have been identified. In this study, we identified 54 and 50 bZIP proteins from whole-genome sequences of V. radiata and V. angularis, respectively. First, we comprehensively surveyed the characteristics of all bZIP genes, including their gene structure, chromosome distribution and motif composition. Phylogenetic trees showed that VrbZIP and VabZIP proteins were divided into ten clades comprising nine known and one unknown subgroup. The results of the nucleotide substitution rate of the orthologous gene pairs showed that bZIP proteins have undergone strong purifying selection: V. radiata and V. angularis diverged 1.25 million years ago (mya) to 9.20 mya (average of 4.95 mya). We also found that many cis-acting regulatory elements (CAREs) involved in abiotic stress and plant hormone responses were detected in the putative promoter regions of the bZIP genes. Finally, using the quantitative real-time PCR (qRT-PCR) method, we performed expression profiling of the bZIP genes in response to drought, salt and abscisic acid (ABA). We identified several bZIP genes that may be involved in drought and salt responses. Generally, our results provided useful and rich resources of VrbZIP and VabZIP genes for the functional characterization and understanding of bZIP transcription factors (TFs) in warm-season legumes. In addition, our results revealed important and interesting data - a subset of VrbZIP and VabZIP gene expression profiles in response to drought, salt and ABA stress. These results provide gene expression evidence for the selection of

Water polygons in high-resolution protein crystal structures.

Science.gov (United States)

Lee, Jonas; Kim, Sung-Hou

2009-07-01

We have analyzed the interstitial water (ISW) structures in 1500 protein crystal structures deposited in the Protein Data Bank that have greater than 1.5 A resolution with less than 90% sequence similarity with each other. We observed varieties of polygonal water structures composed of three to eight water molecules. These polygons may represent the time- and space-averaged structures of "stable" water oligomers present in liquid water, and their presence as well as relative population may be relevant in understanding physical properties of liquid water at a given temperature. On an average, 13% of ISWs are localized enough to be visible by X-ray diffraction. Of those, averages of 78% are water molecules in the first water layer on the protein surface. Of the localized ISWs beyond the first layer, almost half of them form water polygons such as trigons, tetragons, as well as expected pentagons, hexagons, higher polygons, partial dodecahedrons, and disordered networks. Most of the octagons and nanogons are formed by fusion of smaller polygons. The trigons are most commonly observed. We suggest that our observation provides an experimental basis for including these water polygon structures in correlating and predicting various water properties in liquid state.

A specific role for the ZipA protein in cell division: stabilization of the FtsZ protein.

Science.gov (United States)

Pazos, Manuel; Natale, Paolo; Vicente, Miguel

2013-02-01

In Escherichia coli, the cell division protein FtsZ is anchored to the cytoplasmic membrane by the action of the bitopic membrane protein ZipA and the cytoplasmic protein FtsA. Although the presence of both ZipA and FtsA is strictly indispensable for cell division, an FtsA gain-of-function mutant FtsA* (R286W) can bypass the ZipA requirement for cell division. This observation casts doubts on the role of ZipA and its need for cell division. Maxicells are nucleoid-free bacterial cells used as a whole cell in vitro system to probe protein-protein interactions without the need of protein purification. We show that ZipA protects FtsZ from the ClpXP-directed degradation observed in E. coli maxicells and that ZipA-stabilized FtsZ forms membrane-attached spiral-like structures in the bacterial cytoplasm. The overproduction of the FtsZ-binding ZipA domain is sufficient to protect FtsZ from degradation, whereas other C-terminal ZipA partial deletions lacking it are not. Individual overproduction of the proto-ring component FtsA or its gain-of-function mutant FtsA* does not result in FtsZ protection. Overproduction of FtsA or FtsA* together with ZipA does not interfere with the FtsZ protection. Moreover, neither FtsA nor FtsA* protects FtsZ when overproduced together with ZipA mutants lacking the FZB domain. We propose that ZipA protects FtsZ from degradation by ClpP by making the FtsZ site of interaction unavailable to the ClpX moiety of the ClpXP protease. This role cannot be replaced by either FtsA or FtsA*, suggesting a unique function for ZipA in proto-ring stability.

Some solvable, and as yet unsolvable, polygon and walk models

International Nuclear Information System (INIS)

Guttmann, Anthony J

2006-01-01

One partly solvable and two solvable models of polygons are discussed. Using a simple transfer matrix approach Iwan Jensen has derived very long series expansions for the perimeter generating function of both three-choice polygons and punctured staircase polygons. In both cases it is found that all the terms in the generating function can be reproduced from a linear Fuchsian differential equation of order 8. We report on an analysis of the properties of the differential equations. Recently Enrica Duchi has discussed the problem of so-called prudent self-avoiding walks. We discuss the polygon analogue of this problem, and argue that the generating function for prudent polygons is unlikely to be differentiably finite, though a restricted version of the problem, called prudent polygons of the second type, is likely to be differentiably finite. The exact generating function for prudent polygons of the first type is also found

A modified detector concept for SuperCDMS: The HiZIP and its charge performance

Energy Technology Data Exchange (ETDEWEB)

Page, Kedar Mohan [Queen' s U.

2013-01-01

SuperCDMS (Super Cryogenic Dark Matter Search) is a leading direct dark mat-ter search experiment which uses solid state detectors (Ge crystals) at milliKelvintemperatures to look for nuclear recoils caused by dark matter interactions in the de-tector. `Weakly Interacting Massive Particles' (WIMPs) are the most favoured darkmatter candidate particles. SuperCDMS, like many other direct dark matter searchexperiments, primarily looks for WIMPs. The measurement of both the ionizationand the lattice vibration (phonon) signals from an interaction in the detector allow itto discriminate against electron recoils which are the main source of background forWIMP detection.SuperCDMS currently operates about 9 kg of Ge detectors at the Soudan under-ground lab in northern Minnesota. In its next phase, SuperCDMS SNOLAB plansto use 100-200 kg of target mass (Ge) which would allow it to probe more of theinteresting and and as of yet unexplored parameter space for WIMPs predicted bytheoretical models. The SuperCDMS Queen's Test Facility is a detector test facilitywhich is intended to serve as detector testing and detector research and developmentpurposes for the SuperCDMS experiment.A modifed detector called the HiZIP (Half-iZIP), which is reduced in complex-ity in comparison to the currently used iZIP (interleaved Z-sensitive Ionization and Phonon mediated) detectors, is studied in this thesis. The HiZIP detector designalso serves to discriminate against background from multiple scatter events occurringclose to the surfaces in a single detector. Studies carried out to compare the surfaceevent leakage in the HiZIP detector using limited information from iZIP data takenat SuperCDMS test facility at UC Berkley produce a highly conservative upper limitof 5 out of 10,000 events at 90% condence level. This upper limit is the best amongmany different HiZIP congurations that were investigated and is comparable to theupper limit calculated for an HiZIP detector in the same way

A Petunia Homeodomain-Leucine Zipper Protein, PhHD-Zip, Plays an Important Role in Flower Senescence

Science.gov (United States)

Chang, Xiaoxiao; Donnelly, Linda; Sun, Daoyang; Rao, Jingping; Reid, Michael S.; Jiang, Cai-Zhong

2014-01-01

Flower senescence is initiated by developmental and environmental signals, and regulated by gene transcription. A homeodomain-leucine zipper transcription factor, PhHD-Zip, is up-regulated during petunia flower senescence. Virus-induced gene silencing of PhHD-Zip extended flower life by 20% both in unpollinated and pollinated flowers. Silencing PhHD-Zip also dramatically reduced ethylene production and the abundance of transcripts of genes involved in ethylene (ACS, ACO), and ABA (NCED) biosynthesis. Abundance of transcripts of senescence-related genes (SAG12, SAG29) was also dramatically reduced in the silenced flowers. Over-expression of PhHD-Zip accelerated petunia flower senescence. Furthermore, PhHD-Zip transcript abundance in petunia flowers was increased by application of hormones (ethylene, ABA) and abiotic stresses (dehydration, NaCl and cold). Our results suggest that PhHD-Zip plays an important role in regulating petunia flower senescence. PMID:24551088

A Petunia homeodomain-leucine zipper protein, PhHD-Zip, plays an important role in flower senescence.

Science.gov (United States)

Chang, Xiaoxiao; Donnelly, Linda; Sun, Daoyang; Rao, Jingping; Reid, Michael S; Jiang, Cai-Zhong

2014-01-01

Flower senescence is initiated by developmental and environmental signals, and regulated by gene transcription. A homeodomain-leucine zipper transcription factor, PhHD-Zip, is up-regulated during petunia flower senescence. Virus-induced gene silencing of PhHD-Zip extended flower life by 20% both in unpollinated and pollinated flowers. Silencing PhHD-Zip also dramatically reduced ethylene production and the abundance of transcripts of genes involved in ethylene (ACS, ACO), and ABA (NCED) biosynthesis. Abundance of transcripts of senescence-related genes (SAG12, SAG29) was also dramatically reduced in the silenced flowers. Over-expression of PhHD-Zip accelerated petunia flower senescence. Furthermore, PhHD-Zip transcript abundance in petunia flowers was increased by application of hormones (ethylene, ABA) and abiotic stresses (dehydration, NaCl and cold). Our results suggest that PhHD-Zip plays an important role in regulating petunia flower senescence.

A Petunia homeodomain-leucine zipper protein, PhHD-Zip, plays an important role in flower senescence.

Directory of Open Access Journals (Sweden)

Xiaoxiao Chang

Full Text Available Flower senescence is initiated by developmental and environmental signals, and regulated by gene transcription. A homeodomain-leucine zipper transcription factor, PhHD-Zip, is up-regulated during petunia flower senescence. Virus-induced gene silencing of PhHD-Zip extended flower life by 20% both in unpollinated and pollinated flowers. Silencing PhHD-Zip also dramatically reduced ethylene production and the abundance of transcripts of genes involved in ethylene (ACS, ACO, and ABA (NCED biosynthesis. Abundance of transcripts of senescence-related genes (SAG12, SAG29 was also dramatically reduced in the silenced flowers. Over-expression of PhHD-Zip accelerated petunia flower senescence. Furthermore, PhHD-Zip transcript abundance in petunia flowers was increased by application of hormones (ethylene, ABA and abiotic stresses (dehydration, NaCl and cold. Our results suggest that PhHD-Zip plays an important role in regulating petunia flower senescence.

Reprogramming of metabolism by the Arabidopsis thaliana bZIP11 transcription factor

NARCIS (Netherlands)

Ma, J.

2012-01-01

The Arabidopsis bZIP11 transcription factor is known to regulate amino acid metabolism, and transcriptomic analysis suggests that bZIP11 has a broader regulatory effects in metabolism. Moreover, sucrose controls its translation via its uORF and all the available evidences point to the fact that

Decomposition of orthogonal polygons in a set of rectanglеs

OpenAIRE

Shestakov, E.; Voronov, A.

2009-01-01

Algorithm for covering orthogonal integrated circuit layout objects is considered. Objects of the research are special single-connected orthogonal polygons which are generated during decomposition of any multiply connected polygon in a set of single-connected orthogonal polygons. Developed algorithm for covering polygons based on the mathematical techinque of logic matrix transformation. Results described in this paper, can be applied in computer geometry and image analysis.

The magnetic field generated by a rotating charged polygon

International Nuclear Information System (INIS)

Wan, Songlin; Chen, Xiangyu; Teng, Baohua; Fu, Hao; Li, Yefeng; Wu, Minghe; Wu, Shaoyi; Balfour, E A

2014-01-01

The magnetic field along the symmetry axis of a regular polygon carrying a uniform electric charge on its edges is calculated systematically when the polygon is rotated about this axis of symmetry. A group of circular current-carrying coils arranged concentrically about the axis of the polygon has been designed to simulate the magnetic field characteristics of the rotating charged polygon. The magnetic field of the simulated coils is measured using the PASCO magnetic field sensor. The results show that the theoretical calculation agrees well with the experimental results. (paper)

Parcels and Land Ownership - Volusia County Parcels (Polygons)

Data.gov (United States)

NSGIC Local Govt | GIS Inventory — Parcel Ownership Polygon Layer: Polygons showing property ownership created from the "master" subdivision base map for Volusia County. Multiple lots and parcels...

Entanglement complexity of semiflexible lattice polygons

International Nuclear Information System (INIS)

Orlandini, E; Tesi, M C; Whittington, S G

2005-01-01

We use Monte Carlo methods to study knotting in polygons on the simple cubic lattice with a stiffness fugacity. We investigate how the knot probability depends on stiffness and how the relative frequency of trefoils and figure eight knots changes as the stiffness changes. In addition, we examine the effect of stiffness on the writhe of the polygons. (letter to the editor)

Generating equilateral random polygons in confinement III

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Montemayor, A; Ziegler, U

2012-01-01

In this paper we continue our earlier studies (Diao et al 2011 J. Phys. A: Math. Theor. 44 405202, Diao et al J. Phys. A: Math. Theor. 45 275203) on the generation methods of random equilateral polygons confined in a sphere. The first half of this paper is concerned with the generation of confined equilateral random walks. We show that if the selection of a vertex is uniform subject to the position of its previous vertex and the confining condition, then the distributions of the vertices are not uniform, although there exists a distribution such that if the initial vertex is selected following this distribution, then all vertices of the random walk follow this same distribution. Thus in order to generate a confined equilateral random walk, the selection of a vertex cannot be uniform subject to the position of its previous vertex and the confining condition. We provide a simple algorithm capable of generating confined equilateral random walks whose vertex distribution is almost uniform in the confinement sphere. In the second half of this paper we show that any process generating confined equilateral random walks can be turned into a process generating confined equilateral random polygons with the property that the vertex distribution of the polygons approaches the vertex distribution of the walks as the polygons get longer and longer. In our earlier studies, the starting point of the confined polygon is fixed at the center of the sphere. The new approach here allows us to move the starting point of the confined polygon off the center of the sphere. (paper)

Inscribed polygons and Heron polynomials

International Nuclear Information System (INIS)

Varfolomeev, V V

2003-01-01

Heron's well-known formula expressing the area of a triangle in terms of the lengths of its sides is generalized in the following sense to polygons inscribed in a circle: it is proved that the area is an algebraic function of the lengths of the edges of the polygon. Similar results are proved for the diagonals and the radius of the circumscribed circle. The resulting algebraic equations are studied and elementary geometric applications of the algebraic results obtained are presented

Elucidation of the Specific Formation of Homo- and Heterodimeric Forms of ThbZIP1 and Its Role in Stress

Directory of Open Access Journals (Sweden)

Xianguang Nie

2014-06-01

Full Text Available Protein–protein interactions are important for the molecular understanding of the biological processes of proteins. The dimerization of bZIPs (basic leucine zipper proteins is involved in modifying binding site specificities, altering dimer stability, and permitting a new set of specific protein-to-protein interactions to occur at the promoter. In the present study, we studied the whether ThbZIP1 form homo- and heterodimers using the yeast two-hybrid method. Five bZIP genes were cloned from Tamarix hispida to investigate their interaction with ThbZIP1. Our results showed that ThbZIP1 can form homodimers with itself, and three out of five bZIPs could interact with the ThbZIP1 protein to form heterodimers. Real-time RT-PCR results suggested that these ThbZIPs can all respond to abiotic stresses and abscisic acid (ABA, and shared very similar expression patterns in response to NaCl, ABA or PEG6000. Subcellular localization studies showed that all ThbZIPs are targeted to the nucleus. Our results showed that ThbZIP1 are dimeric proteins, which can form homo- or heterodimers.

Isolation and expression analysis of EcbZIP17 from different finger millet genotypes shows conserved nature of the gene.

Science.gov (United States)

Chopperla, Ramakrishna; Singh, Sonam; Mohanty, Sasmita; Reddy, Nanja; Padaria, Jasdeep C; Solanke, Amolkumar U

2017-10-01

Basic leucine zipper (bZIP) transcription factors comprise one of the largest gene families in plants. They play a key role in almost every aspect of plant growth and development and also in biotic and abiotic stress tolerance. In this study, we report isolation and characterization of EcbZIP17 , a group B bZIP transcription factor from a climate smart cereal, finger millet ( Eleusine coracana L.). The genomic sequence of EcbZIP17 is 2662 bp long encompassing two exons and one intron with ORF of 1722 bp and peptide length of 573 aa. This gene is homologous to AtbZIP17 ( Arabidopsis ), ZmbZIP17 (maize) and OsbZIP60 (rice) which play a key role in endoplasmic reticulum (ER) stress pathway. In silico analysis confirmed the presence of basic leucine zipper (bZIP) and transmembrane (TM) domains in the EcbZIP17 protein. Allele mining of this gene in 16 different genotypes by Sanger sequencing revealed no variation in nucleotide sequence, including the 618 bp long intron. Expression analysis of EcbZIP17 under heat stress exhibited similar pattern of expression in all the genotypes across time intervals with highest upregulation after 4 h. The present study established the conserved nature of EcbZIP17 at nucleotide and expression level.

Zinc Transporter SLC39A7/ZIP7 Promotes Intestinal Epithelial Self-Renewal by Resolving ER Stress

Science.gov (United States)

Ohashi, Wakana; Kimura, Shunsuke; Iwanaga, Toshihiko; Furusawa, Yukihiro; Irié, Tarou; Izumi, Hironori; Watanabe, Takashi; Hara, Takafumi; Ohara, Osamu; Koseki, Haruhiko; Sato, Toshiro; Robine, Sylvie; Mori, Hisashi; Hattori, Yuichi; Mishima, Kenji; Ohno, Hiroshi; Hase, Koji; Fukada, Toshiyuki

2016-01-01

Zinc transporters play a critical role in spatiotemporal regulation of zinc homeostasis. Although disruption of zinc homeostasis has been implicated in disorders such as intestinal inflammation and aberrant epithelial morphology, it is largely unknown which zinc transporters are responsible for the intestinal epithelial homeostasis. Here, we show that Zrt-Irt-like protein (ZIP) transporter ZIP7, which is highly expressed in the intestinal crypt, is essential for intestinal epithelial proliferation. Mice lacking Zip7 in intestinal epithelium triggered endoplasmic reticulum (ER) stress in proliferative progenitor cells, leading to significant cell death of progenitor cells. Zip7 deficiency led to the loss of Olfm4+ intestinal stem cells and the degeneration of post-mitotic Paneth cells, indicating a fundamental requirement for Zip7 in homeostatic intestinal regeneration. Taken together, these findings provide evidence for the importance of ZIP7 in maintenance of intestinal epithelial homeostasis through the regulation of ER function in proliferative progenitor cells and maintenance of intestinal stem cells. Therapeutic targeting of ZIP7 could lead to effective treatment of gastrointestinal disorders. PMID:27736879

Zinc Transporter SLC39A7/ZIP7 Promotes Intestinal Epithelial Self-Renewal by Resolving ER Stress.

Directory of Open Access Journals (Sweden)

Wakana Ohashi

2016-10-01

Full Text Available Zinc transporters play a critical role in spatiotemporal regulation of zinc homeostasis. Although disruption of zinc homeostasis has been implicated in disorders such as intestinal inflammation and aberrant epithelial morphology, it is largely unknown which zinc transporters are responsible for the intestinal epithelial homeostasis. Here, we show that Zrt-Irt-like protein (ZIP transporter ZIP7, which is highly expressed in the intestinal crypt, is essential for intestinal epithelial proliferation. Mice lacking Zip7 in intestinal epithelium triggered endoplasmic reticulum (ER stress in proliferative progenitor cells, leading to significant cell death of progenitor cells. Zip7 deficiency led to the loss of Olfm4+ intestinal stem cells and the degeneration of post-mitotic Paneth cells, indicating a fundamental requirement for Zip7 in homeostatic intestinal regeneration. Taken together, these findings provide evidence for the importance of ZIP7 in maintenance of intestinal epithelial homeostasis through the regulation of ER function in proliferative progenitor cells and maintenance of intestinal stem cells. Therapeutic targeting of ZIP7 could lead to effective treatment of gastrointestinal disorders.

A modified detector concept for SuperCDMS: The HiZIP and its charge performance

Science.gov (United States)

Page, Kedar Mohan

SuperCDMS is a leading direct dark matter search experiment which uses solid state detectors (Ge crystals) at milliKelvin temperatures to look for nuclear recoils caused by dark matter interactions in the detector. 'Weakly Interacting Massive Particles' (WIMPs) are the most favoured dark matter candidate particles. SuperCDMS, like many other direct dark matter search experiments, primarily looks for WIMPs. The measurement of both the ionization and the lattice vibration (phonon) signals from an interaction in the detector allow it to discriminate against electron recoils which are the main source of background for WIMP detection. SuperCDMS currently operates about 9 kgs worth of germanium detectors at the Soudan underground lab in northern Minnesota. In its next phase, SuperCDMS SNOLAB, it plans to use 100-200 kg of target mass (Ge) which would allow it to probe more of the interesting and unexplored parameter space for WIMPs predicted by theoretical models. The SuperCDMS Queen's Test Facility is a detector testing facility which is intended to serve detector testing and detector research and development purposes for the SuperCDMS experiment. A modified detector called the 'HiZIP' (Half-iZIP), which is reduced in complexity in comparison to the currently used iZIP (interleaved Z-sensitive Ionization and Phonon mediated) detectors, is studied in this thesis. The HiZIP detector design also serves to discriminate against background from multiple scatter events occurring close to the surfaces in a single detector. Studies carried out to compare the surface event leakage in the HiZIP detector using limited information from iZIP data taken at SuperCDMS test facility at UC Berkley produce a highly conservative upper limit of 5 out of 10,000 events at 90% confidence level. This upper limit is the best among many different HiZIP configurations that were investigated and is comparable to the upper limit calculated for an iZIP detector in the same way using the same data. A

Polygon on Mars

Science.gov (United States)

2008-01-01

This image shows a small-scale polygonal pattern in the ground near NASA's Phoenix Mars Lander. This pattern is similar in appearance to polygonal structures in icy ground in the arctic regions of Earth. Phoenix touched down on the Red Planet at 4:53 p.m. Pacific Time (7:53 p.m. Eastern Time), May 25, 2008, in an arctic region called Vastitas Borealis, at 68 degrees north latitude, 234 degrees east longitude. This image was acquired by the Surface Stereo Imager shortly after landing. On the Phoenix mission calendar, landing day is known as Sol 0, the first Martian day of the mission. The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

N-terminal segments modulate the α-helical propensities of the intrinsically disordered basic regions of bZIP proteins.

Science.gov (United States)

Das, Rahul K; Crick, Scott L; Pappu, Rohit V

2012-02-17

Basic region leucine zippers (bZIPs) are modular transcription factors that play key roles in eukaryotic gene regulation. The basic regions of bZIPs (bZIP-bRs) are necessary and sufficient for DNA binding and specificity. Bioinformatic predictions and spectroscopic studies suggest that unbound monomeric bZIP-bRs are uniformly disordered as isolated domains. Here, we test this assumption through a comparative characterization of conformational ensembles for 15 different bZIP-bRs using a combination of atomistic simulations and circular dichroism measurements. We find that bZIP-bRs have quantifiable preferences for α-helical conformations in their unbound monomeric forms. This helicity varies from one bZIP-bR to another despite a significant sequence similarity of the DNA binding motifs (DBMs). Our analysis reveals that intramolecular interactions between DBMs and eight-residue segments directly N-terminal to DBMs are the primary modulators of bZIP-bR helicities. We test the accuracy of this inference by designing chimeras of bZIP-bRs to have either increased or decreased overall helicities. Our results yield quantitative insights regarding the relationship between sequence and the degree of intrinsic disorder within bZIP-bRs, and might have general implications for other intrinsically disordered proteins. Understanding how natural sequence variations lead to modulation of disorder is likely to be important for understanding the evolution of specificity in molecular recognition through intrinsically disordered regions (IDRs). Copyright © 2011 Elsevier Ltd. All rights reserved.

A fast ergodic algorithm for generating ensembles of equilateral random polygons

Science.gov (United States)

Varela, R.; Hinson, K.; Arsuaga, J.; Diao, Y.

2009-03-01

Knotted structures are commonly found in circular DNA and along the backbone of certain proteins. In order to properly estimate properties of these three-dimensional structures it is often necessary to generate large ensembles of simulated closed chains (i.e. polygons) of equal edge lengths (such polygons are called equilateral random polygons). However finding efficient algorithms that properly sample the space of equilateral random polygons is a difficult problem. Currently there are no proven algorithms that generate equilateral random polygons with its theoretical distribution. In this paper we propose a method that generates equilateral random polygons in a 'step-wise uniform' way. We prove that this method is ergodic in the sense that any given equilateral random polygon can be generated by this method and we show that the time needed to generate an equilateral random polygon of length n is linear in terms of n. These two properties make this algorithm a big improvement over the existing generating methods. Detailed numerical comparisons of our algorithm with other widely used algorithms are provided.

Steady state of tapped granular polygons

International Nuclear Information System (INIS)

Carlevaro, Carlos M; Pugnaloni, Luis A

2011-01-01

The steady state packing fraction of a tapped granular bed is studied for different grain shapes via a discrete element method. Grains are monosized regular polygons, from triangles to icosagons. Comparisons with disc packings show that the steady state packing fraction as a function of the tapping intensity presents the same general trends in polygon packings. However, better packing fractions are obtained, as expected, for shapes that can tessellate the plane (triangles, squares and hexagons). In addition, we find a sharp transition for packings of polygons with more than 13 vertices signaled by a discontinuity in the packing fraction at a particular tapping intensity. Density fluctuations for most shapes are consistent with recent experimental findings in disc packing; however, a peculiar behavior is found for triangles and squares

Morphometric analysis of the arteries of Willis Polygon

Directory of Open Access Journals (Sweden)

Canaz Huseyin

2018-03-01

Full Text Available Objective: Willis polygon forms the basis of the arterial circulation of the cerebrum. Willis polygon is a vascular structure whom variations are not rare. Knowledge of the anatomy and preservation of its integrity is crucial for performing neurovascular surgery and intracranial tumour surgery. Because of the important vascular and neurological structures, approaches to this region are considered extremely risky. One of the main variations in-person basis is the diameter differences of the arteries, which forms Willis polygon, between the left and right hemispheres. About structure and variations, studies of Rhoton and Yasargil had formed the touchstone. Our aim is to contribute to the literature and clinical studies, to be done in the future, by comparing our results with previous studies about variations and morphometric features of Willis polygon.

Geophysical Features - SILURIAN_REEF_POLYGONS_MM54_IN: Silurian Reef Locations in Indiana (Indiana Geological Survey, 1:500,000, Polygon Shapefile)

Data.gov (United States)

NSGIC State | GIS Inventory — SILURIAN_REEF_POLYGONS_MM54_IN is a polygon shapefile that shows the general locations of Silurian rock reef bank formations in Indiana. These data include two major...

HvZIP7 mediates zinc accumulation in barley (Hordeum vulgare) at moderately high zinc supply

DEFF Research Database (Denmark)

Tiong, Jingwen; Mcdonald, Glenn K.; Genc, Yusuf

2014-01-01

Summary: High expression of zinc (Zn)-regulated, iron-regulated transporter-like protein (ZIP) genes increases root Zn uptake in dicots, leading to high accumulation of Zn in shoots. However, none of the ZIP genes tested previously in monocots could enhance shoot Zn accumulation. In this report...... were also generated to further understand the functions of HvZIP7 in metal transport. HvZIP7 is strongly induced by Zn deficiency, primarily in vascular tissues of roots and leaves, and its protein was localized in the plasma membrane. These properties are similar to its closely related homologs...... in dicots. Overexpression of HvZIP7 in barley plants increased Zn uptake when moderately high concentrations of Zn were supplied. Significantly, there was a specific enhancement of shoot Zn accumulation, with no measurable increase in iron (Fe), manganese (Mn), copper (Cu) or cadmium (Cd). HvZIP7 displays...

ZIP13: A Study of Drosophila Offers an Alternative Explanation for the Corresponding Human Disease

Directory of Open Access Journals (Sweden)

Guiran Xiao

2018-01-01

Full Text Available The fruit fly Drosophila melanogaster has become an important model organism to investigate metal homeostasis and human diseases. Previously we identified dZIP13 (CG7816, a member of the ZIP transporter family (SLC39A and presumably a zinc importer, is in fact physiologically primarily responsible to move iron from the cytosol into the secretory compartments in the fly. This review will discuss the implication of this finding for the etiology of Spondylocheirodysplasia-Ehlers-Danlos Syndrome (SCD–EDS, a human disease defective in ZIP13. We propose an entirely different model in that lack of iron in the secretory compartment may underlie SCD-EDS. Altogether three different working models are discussed, supported by relevant findings made in different studies, with uncertainties, and questions remained to be solved. We speculate that the distinct ZIP13 sequence features, different from those of all other ZIP family members, may confer it special transport properties.

Two generalizations of column-convex polygons

International Nuclear Information System (INIS)

Feretic, Svjetlan; Guttmann, Anthony J

2009-01-01

Column-convex polygons were first counted by area several decades ago, and the result was found to be a simple, rational, generating function. In this work we generalize that result. Let a p-column polyomino be a polyomino whose columns can have 1, 2, ..., p connected components. Then column-convex polygons are equivalent to 1-convex polyominoes. The area generating function of even the simplest generalization, namely 2-column polyominoes, is unlikely to be solvable. We therefore define two classes of polyominoes which interpolate between column-convex polygons and 2-column polyominoes. We derive the area generating functions of those two classes, using extensions of existing algorithms. The growth constants of both classes are greater than the growth constant of column-convex polyominoes. Rather tight lower bounds on the growth constants complement a comprehensive asymptotic analysis.

Genome Wide Identification of Orthologous ZIP Genes Associated with Zinc and Iron Translocation in Setaria italica.

Science.gov (United States)

Alagarasan, Ganesh; Dubey, Mahima; Aswathy, Kumar S; Chandel, Girish

2017-01-01

Genes in the ZIP family encode transcripts to store and transport bivalent metal micronutrient, particularly iron (Fe) and or zinc (Zn). These transcripts are important for a variety of functions involved in the developmental and physiological processes in many plant species, including most, if not all, Poaceae plant species and the model species Arabidopsis. Here, we present the report of a genome wide investigation of orthologous ZIP genes in Setaria italica and the identification of 7 single copy genes. RT-PCR shows 4 of them could be used to increase the bio-availability of zinc and iron content in grains. Of 36 ZIP members, 25 genes have traces of signal peptide based sub-cellular localization, as compared to those of plant species studied previously, yet translocation of ions remains unclear. In silico analysis of gene structure and protein nature suggests that these two were preeminent in shaping the functional diversity of the ZIP gene family in S. italica . NAC, bZIP and bHLH are the predominant Fe and Zn responsive transcription factors present in SiZIP genes. Together, our results provide new insights into the signal peptide based/independent iron and zinc translocation in the plant system and allowed identification of ZIP genes that may be involved in the zinc and iron absorption from the soil, and thus transporting it to the cereal grain underlying high micronutrient accumulation.

Exact generating function for 2-convex polygons

International Nuclear Information System (INIS)

James, W R G; Jensen, I; Guttmann, A J

2008-01-01

Polygons are described as almost-convex if their perimeter differs from the perimeter of their minimum bounding rectangle by twice their 'concavity index', m. Such polygons are called m-convex polygons and are characterized by having up to m indentations in their perimeter. We first describe how we conjectured the (isotropic) generating function for the case m = 2 using a numerical procedure based on series expansions. We then proceed to prove this result for the more general case of the full anisotropic generating function, in which steps in the x and y directions are distinguished. In doing so, we develop tools that would allow for the case m > 2 to be studied

Accelerating Generalized Polygon Beams and Their Propagation

International Nuclear Information System (INIS)

Zhang Yun-Tian; Zhang Zhi-Gang; Cheng Teng; Zhang Qing-Chuan; Wu Xiao-Ping

2015-01-01

Accelerating beams with intensity cusps and exotic topological properties are drawing increasing attention as they have extensive uses in many intriguing fields. We investigate the structural features of accelerating polygon beams, show their generalized mathematical form theoretically, and discuss the even-numbered polygon beams. Furthermore, we also carry out the experiment and observe the intensity evolution during their propagation

Up-regulation of Slc39A2(Zip2) mRNA in peripheral blood mononuclear cells from patients with pulmonary tuberculosis.

Science.gov (United States)

Tao, Yan-ting; Huang, Qing; Jiang, Ya-li; Wang, Xiao-lei; Sun, Ping; Tian, Yuanyuan; Wu, Hai-liang; Zhang, Min; Meng, Si-bo; Wang, Yu-shu; Sun, Qing; Zhang, Lian-ying

2013-08-01

Zinc is the most common trace mineral after iron in the human body. In organisms, zinc transporters help zinc influx and efflux from cells. A previous study has reported that Zip2 was up-regulated over 27-fold in human monocytic THP-1 cells, when intracellular zinc was depleted by TPEN. Our study found Zip2 was over-expressed in leukocytes of asthmatic infants, especially those in which the serum zinc level was lower than those in healthy infants. Pulmonary tuberculosis (PTB) patients have significantly low serum zinc levels. Here we investigated whether Zip2 level was changed in the patients with PTB. Zip2 mRNA and protein levels in peripheral blood mononuclear cells (PBMC) from PTB (n1=23) and healthy controls (n2=42) were detected by quantitative real-time PCR and western blot, respectively. mRNA expression levels of another four zinc transporters, Zip1, Zip6, Zip8 and ZnT1, were detected by quantitative real-time PCR. Zip2 mRNA level was significantly up-regulated in PTB patients (P=0.001), and Zip8 mRNA level was significantly down-regulated compared with control individuals (Plevels of Zip1, Zip6 and ZnT1 in either group (P>0.05). Zip2 protein expression levels increased in PTB patients compared with control individuals. Our study found that knockdown of ZIP2 with siRNA caused a decrease in Zip2 levels in PBMC of PTB patients, while reducing the expression of INF-γ (Pinitial infection control of the human body, by promoting and maintaining the immune response of adaptive T cells.

The zinc transporter ZIP12 regulates the pulmonary vascular response to chronic hypoxia.

Science.gov (United States)

Zhao, Lan; Oliver, Eduardo; Maratou, Klio; Atanur, Santosh S; Dubois, Olivier D; Cotroneo, Emanuele; Chen, Chien-Nien; Wang, Lei; Arce, Cristina; Chabosseau, Pauline L; Ponsa-Cobas, Joan; Frid, Maria G; Moyon, Benjamin; Webster, Zoe; Aldashev, Almaz; Ferrer, Jorge; Rutter, Guy A; Stenmark, Kurt R; Aitman, Timothy J; Wilkins, Martin R

2015-08-20

The typical response of the adult mammalian pulmonary circulation to a low oxygen environment is vasoconstriction and structural remodelling of pulmonary arterioles, leading to chronic elevation of pulmonary artery pressure (pulmonary hypertension) and right ventricular hypertrophy. Some mammals, however, exhibit genetic resistance to hypoxia-induced pulmonary hypertension. We used a congenic breeding program and comparative genomics to exploit this variation in the rat and identified the gene Slc39a12 as a major regulator of hypoxia-induced pulmonary vascular remodelling. Slc39a12 encodes the zinc transporter ZIP12. Here we report that ZIP12 expression is increased in many cell types, including endothelial, smooth muscle and interstitial cells, in the remodelled pulmonary arterioles of rats, cows and humans susceptible to hypoxia-induced pulmonary hypertension. We show that ZIP12 expression in pulmonary vascular smooth muscle cells is hypoxia dependent and that targeted inhibition of ZIP12 inhibits the rise in intracellular labile zinc in hypoxia-exposed pulmonary vascular smooth muscle cells and their proliferation in culture. We demonstrate that genetic disruption of ZIP12 expression attenuates the development of pulmonary hypertension in rats housed in a hypoxic atmosphere. This new and unexpected insight into the fundamental role of a zinc transporter in mammalian pulmonary vascular homeostasis suggests a new drug target for the pharmacological management of pulmonary hypertension.

The average inter-crossing number of equilateral random walks and polygons

International Nuclear Information System (INIS)

Diao, Y; Dobay, A; Stasiak, A

2005-01-01

In this paper, we study the average inter-crossing number between two random walks and two random polygons in the three-dimensional space. The random walks and polygons in this paper are the so-called equilateral random walks and polygons in which each segment of the walk or polygon is of unit length. We show that the mean average inter-crossing number ICN between two equilateral random walks of the same length n is approximately linear in terms of n and we were able to determine the prefactor of the linear term, which is a = 3ln2/8 ∼ 0.2599. In the case of two random polygons of length n, the mean average inter-crossing number ICN is also linear, but the prefactor of the linear term is different from that of the random walks. These approximations apply when the starting points of the random walks and polygons are of a distance ρ apart and ρ is small compared to n. We propose a fitting model that would capture the theoretical asymptotic behaviour of the mean average ICN for large values of ρ. Our simulation result shows that the model in fact works very well for the entire range of ρ. We also study the mean ICN between two equilateral random walks and polygons of different lengths. An interesting result is that even if one random walk (polygon) has a fixed length, the mean average ICN between the two random walks (polygons) would still approach infinity if the length of the other random walk (polygon) approached infinity. The data provided by our simulations match our theoretical predictions very well

The unusual asymptotics of three-sided prudent polygons

International Nuclear Information System (INIS)

Beaton, Nicholas R; Guttmann, Anthony J; Flajolet, Philippe

2010-01-01

We have studied the area-generating function of prudent polygons on the square lattice. Exact solutions are obtained for the generating function of two-sided and three-sided prudent polygons, and a functional equation is found for four-sided prudent polygons. This is used to generate series coefficients in polynomial time, and these are analysed to determine the asymptotics numerically. A careful asymptotic analysis of the three-sided polygons produces a most surprising result. A transcendental critical exponent is found, and the leading amplitude is not quite a constant, but is a constant plus a small oscillatory component with an amplitude approximately 10 -8 times that of the leading amplitude. This effect cannot be seen by any standard numerical analysis, but it may be present in other models. If so, it changes our whole view of the asymptotic behaviour of lattice models. (fast track communication)

OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm.

Science.gov (United States)

Wang, Jie-Chen; Xu, Heng; Zhu, Ying; Liu, Qiao-Quan; Cai, Xiu-Ling

2013-08-01

Starch composition and the amount in endosperm, both of which contribute dramatically to seed yield, cooking quality, and taste in cereals, are determined by a series of complex biochemical reactions. However, the mechanism regulating starch biosynthesis in cereal seeds is not well understood. This study showed that OsbZIP58, a bZIP transcription factor, is a key transcriptional regulator controlling starch synthesis in rice endosperm. OsbZIP58 was expressed mainly in endosperm during active starch synthesis. osbzip58 null mutants displayed abnormal seed morphology with altered starch accumulation in the white belly region and decreased amounts of total starch and amylose. Moreover, osbzip58 had a higher proportion of short chains and a lower proportion of intermediate chains of amylopectin. Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression. These findings indicate that OsbZIP58 functions as a key regulator of starch synthesis in rice seeds and provide new insights into seed quality control.

The prion-ZIP connection: From cousins to partners in iron uptake

Science.gov (United States)

Singh, Neena; Asthana, Abhishek; Baksi, Shounak; Desai, Vilok; Haldar, Swati; Hari, Sahi; Tripathi, Ajai K

2015-01-01

ABSTRACT Converging observations from disparate lines of inquiry are beginning to clarify the cause of brain iron dyshomeostasis in sporadic Creutzfeldt-Jakob disease (sCJD), a neurodegenerative condition associated with the conversion of prion protein (PrPC), a plasma membrane glycoprotein, from α-helical to a β-sheet rich PrP-scrapie (PrPSc) isoform. Biochemical evidence indicates that PrPC facilitates cellular iron uptake by functioning as a membrane-bound ferrireductase (FR), an activity necessary for the transport of iron across biological membranes through metal transporters. An entirely different experimental approach reveals an evolutionary link between PrPC and the Zrt, Irt-like protein (ZIP) family, a group of proteins involved in the transport of zinc, iron, and manganese across the plasma membrane. Close physical proximity of PrPC with certain members of the ZIP family on the plasma membrane and increased uptake of extracellular iron by cells that co-express PrPC and ZIP14 suggest that PrPC functions as a FR partner for certain members of this family. The connection between PrPC and ZIP proteins therefore extends beyond common ancestry to that of functional cooperation. Here, we summarize evidence supporting the facilitative role of PrPC in cellular iron uptake, and implications of this activity on iron metabolism in sCJD brains. PMID:26689487

Memory Retrieval Has a Dynamic Influence on the Maintenance Mechanisms That Are Sensitive to ζ-Inhibitory Peptide (ZIP).

Science.gov (United States)

Levitan, David; Fortis-Santiago, Yaihara; Figueroa, Joshua A; Reid, Emily E; Yoshida, Takashi; Barry, Nicholas C; Russo, Abigail; Katz, Donald B

2016-10-12

In neuroscientists' attempts to understand the long-term storage of memory, topics of particular importance and interest are the cellular and system mechanisms of maintenance (e.g., those sensitive to ζ-inhibitory peptide, ZIP) and those induced by memory retrieval (i.e., reconsolidation). Much is known about each of these processes in isolation, but less is known concerning how they interact. It is known that ZIP sensitivity and memory retrieval share at least some molecular targets (e.g., recycling α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid, AMPA, receptors to the plasma membrane); conversely, the fact that sensitivity to ZIP emerges only after consolidation ends suggests that consolidation (and by extension reconsolidation) and maintenance might be mutually exclusive processes, the onset of one canceling the other. Here, we use conditioned taste aversion (CTA) in rats, a cortically dependent learning paradigm, to test this hypothesis. First, we demonstrate that ZIP infusions into gustatory cortex begin interfering with CTA memory 43-45 h after memory acquisition-after consolidation ends. Next, we show that a retrieval trial administered after this time point interrupts the ability of ZIP to induce amnesia and that ZIP's ability to induce amnesia is reengaged only 45 h after retrieval. This pattern of results suggests that memory retrieval and ZIP-sensitive maintenance mechanisms are mutually exclusive and that the progression from one to the other are similar after acquisition and retrieval. They also reveal concrete differences between ZIP-sensitive mechanisms induced by acquisition and retrieval: the latency with which ZIP-sensitive mechanisms are expressed differ for the two processes. Memory retrieval and the molecular mechanisms that are sensitive to ζ-inhibitory peptide (ZIP) are the few manipulations that have been shown to effect memory maintenance. Although much is known about their effect on maintenance separately, it is unknown how they

Calculating the Areas of Polygons with a Smartphone Light Sensor

Science.gov (United States)

Kapucu, Serkan; Simsek, Mertkan; Öçal, Mehmet Fatih

2017-01-01

This study explores finding the areas of polygons with a smartphone light sensor. A square and an irregular pentagon were chosen as our polygons. During the activity, the LED light was placed at the vertices of our polygons, and the illuminance values of this LED light were detected by the smartphone light sensor. The smartphone was placed on a…

Genome Wide Identification of Orthologous ZIP Genes Associated with Zinc and Iron Translocation in Setaria italica

Directory of Open Access Journals (Sweden)

Ganesh Alagarasan

2017-05-01

Full Text Available Genes in the ZIP family encode transcripts to store and transport bivalent metal micronutrient, particularly iron (Fe and or zinc (Zn. These transcripts are important for a variety of functions involved in the developmental and physiological processes in many plant species, including most, if not all, Poaceae plant species and the model species Arabidopsis. Here, we present the report of a genome wide investigation of orthologous ZIP genes in Setaria italica and the identification of 7 single copy genes. RT-PCR shows 4 of them could be used to increase the bio-availability of zinc and iron content in grains. Of 36 ZIP members, 25 genes have traces of signal peptide based sub-cellular localization, as compared to those of plant species studied previously, yet translocation of ions remains unclear. In silico analysis of gene structure and protein nature suggests that these two were preeminent in shaping the functional diversity of the ZIP gene family in S. italica. NAC, bZIP and bHLH are the predominant Fe and Zn responsive transcription factors present in SiZIP genes. Together, our results provide new insights into the signal peptide based/independent iron and zinc translocation in the plant system and allowed identification of ZIP genes that may be involved in the zinc and iron absorption from the soil, and thus transporting it to the cereal grain underlying high micronutrient accumulation.

Average size of random polygons with fixed knot topology.

Science.gov (United States)

Matsuda, Hiroshi; Yao, Akihisa; Tsukahara, Hiroshi; Deguchi, Tetsuo; Furuta, Ko; Inami, Takeo

2003-07-01

We have evaluated by numerical simulation the average size R(K) of random polygons of fixed knot topology K=,3(1),3(1) musical sharp 4(1), and we have confirmed the scaling law R(2)(K) approximately N(2nu(K)) for the number N of polygonal nodes in a wide range; N=100-2200. The best fit gives 2nu(K) approximately 1.11-1.16 with good fitting curves in the whole range of N. The estimate of 2nu(K) is consistent with the exponent of self-avoiding polygons. In a limited range of N (N greater, similar 600), however, we have another fit with 2nu(K) approximately 1.01-1.07, which is close to the exponent of random polygons.

Phosphorylation of the Synaptonemal Complex Protein Zip1 Regulates the Crossover/Noncrossover Decision during Yeast Meiosis.

Directory of Open Access Journals (Sweden)

Xiangyu Chen

2015-12-01

Full Text Available Interhomolog crossovers promote proper chromosome segregation during meiosis and are formed by the regulated repair of programmed double-strand breaks. This regulation requires components of the synaptonemal complex (SC, a proteinaceous structure formed between homologous chromosomes. In yeast, SC formation requires the "ZMM" genes, which encode a functionally diverse set of proteins, including the transverse filament protein, Zip1. In wild-type meiosis, Zmm proteins promote the biased resolution of recombination intermediates into crossovers that are distributed throughout the genome by interference. In contrast, noncrossovers are formed primarily through synthesis-dependent strand annealing mediated by the Sgs1 helicase. This work identifies a conserved region on the C terminus of Zip1 (called Zip1 4S, whose phosphorylation is required for the ZMM pathway of crossover formation. Zip1 4S phosphorylation is promoted both by double-strand breaks (DSBs and the meiosis-specific kinase, MEK1/MRE4, demonstrating a role for MEK1 in the regulation of interhomolog crossover formation, as well as interhomolog bias. Failure to phosphorylate Zip1 4S results in meiotic prophase arrest, specifically in the absence of SGS1. This gain of function meiotic arrest phenotype is suppressed by spo11Δ, suggesting that it is due to unrepaired breaks triggering the meiotic recombination checkpoint. Epistasis experiments combining deletions of individual ZMM genes with sgs1-md zip1-4A indicate that Zip1 4S phosphorylation functions prior to the other ZMMs. These results suggest that phosphorylation of Zip1 at DSBs commits those breaks to repair via the ZMM pathway and provides a mechanism by which the crossover/noncrossover decision can be dynamically regulated during yeast meiosis.

Calculus domains modelled using an original bool algebra based on polygons

Science.gov (United States)

Oanta, E.; Panait, C.; Raicu, A.; Barhalescu, M.; Axinte, T.

2016-08-01

Analytical and numerical computer based models require analytical definitions of the calculus domains. The paper presents a method to model a calculus domain based on a bool algebra which uses solid and hollow polygons. The general calculus relations of the geometrical characteristics that are widely used in mechanical engineering are tested using several shapes of the calculus domain in order to draw conclusions regarding the most effective methods to discretize the domain. The paper also tests the results of several CAD commercial software applications which are able to compute the geometrical characteristics, being drawn interesting conclusions. The tests were also targeting the accuracy of the results vs. the number of nodes on the curved boundary of the cross section. The study required the development of an original software consisting of more than 1700 computer code lines. In comparison with other calculus methods, the discretization using convex polygons is a simpler approach. Moreover, this method doesn't lead to large numbers as the spline approximation did, in that case being required special software packages in order to offer multiple, arbitrary precision. The knowledge resulted from this study may be used to develop complex computer based models in engineering.

Vigorous convection as the explanation for Pluto's polygonal terrain.

Science.gov (United States)

Trowbridge, A J; Melosh, H J; Steckloff, J K; Freed, A M

2016-06-02

Pluto's surface is surprisingly young and geologically active. One of its youngest terrains is the near-equatorial region informally named Sputnik Planum, which is a topographic basin filled by nitrogen (N2) ice mixed with minor amounts of CH4 and CO ices. Nearly the entire surface of the region is divided into irregular polygons about 20-30 kilometres in diameter, whose centres rise tens of metres above their sides. The edges of this region exhibit bulk flow features without polygons. Both thermal contraction and convection have been proposed to explain this terrain, but polygons formed from thermal contraction (analogous to ice-wedges or mud-crack networks) of N2 are inconsistent with the observations on Pluto of non-brittle deformation within the N2-ice sheet. Here we report a parameterized convection model to compute the Rayleigh number of the N2 ice and show that it is vigorously convecting, making Rayleigh-Bénard convection the most likely explanation for these polygons. The diameter of Sputnik Planum's polygons and the dimensions of the 'floating mountains' (the hills of of water ice along the edges of the polygons) suggest that its N2 ice is about ten kilometres thick. The estimated convection velocity of 1.5 centimetres a year indicates a surface age of only around a million years.

Measured Hydrologic Storage Characteristics of Three Major Ice Wedge Polygon Types, Barrow, Alaska

Science.gov (United States)

Chamberlain, A. J.; Liljedahl, A.; Wilson, C. J.; Cable, W.; Romanovsky, V. E.

2014-12-01

Model simulations have suggested that the hydrologic fluxes and stores of Arctic wetlands are constrained by the micro-topographical features of ice wedge polygons, which are abundant in lowland tundra landscapes. Recently observed changes in ice wedge polygon landscapes - in particular, ice wedge degradation and trough formation - emphasize the need to better understand how differing ice wedge polygon morphologies affect the larger hydrologic system. Here we present three seasons of measured end-of-winter snow accumulation, continuous soil moisture and water table elevations, and repeated frost table mapping. Together, these describe the hydrologic characteristics of three main ice wedge polygon types: low centered polygons with limited trough development (representative of a ~500 year old vegetated drained thaw lake basin), and low- and high-centered polygons with well-defined troughs. Dramatic spatiotemporal variability exists both between polygon types and between the features of an individual polygon (e.g. troughs, centers, rims). Landscape-scale end-of-winter snow water equivalent is similar between polygon types, while the sub-polygon scale distribution of the surface water differs, both as snow and as ponded water. Some sub-polygon features appear buffered against large variations in water levels, while others display periods of prolonged recessions and large responses to rain events. Frost table elevations in general mimic the ground surface topography, but with spatiotemporal variability in thaw rate. The studied thaw seasons represented above long-term average rainfall, and in 2014, record high June precipitation. Differing ice wedge polygon types express dramatically different local hydrology, despite nearly identical climate forcing and landscape-scale snow accumulation, making ice wedge polygons an important component when describing the Arctic water, nutrient and energy system.

Polygons on a rotating fluid surface.

Science.gov (United States)

Jansson, Thomas R N; Haspang, Martin P; Jensen, Kåre H; Hersen, Pascal; Bohr, Tomas

2006-05-05

We report a novel and spectacular instability of a fluid surface in a rotating system. In a flow driven by rotating the bottom plate of a partially filled, stationary cylindrical container, the shape of the free surface can spontaneously break the axial symmetry and assume the form of a polygon rotating rigidly with a speed different from that of the plate. With water, we have observed polygons with up to 6 corners. It has been known for many years that such flows are prone to symmetry breaking, but apparently the polygonal surface shapes have never been observed. The creation of rotating internal waves in a similar setup was observed for much lower rotation rates, where the free surface remains essentially flat [J. M. Lopez, J. Fluid Mech. 502, 99 (2004). We speculate that the instability is caused by the strong azimuthal shear due to the stationary walls and that it is triggered by minute wobbling of the rotating plate.

The Polygon

International Nuclear Information System (INIS)

2000-01-01

In Russian, ''The Polygon'' stands for a nuclear test site of 19.000 square kilometers in Kazakhstan, used by the former Soviet Union for hundreds of nuclear tests from 1947 to 1991. This film looks at the legacy of what was once a top secret area, now abandoned, but still sparsely populated, and at the work to be done to detect and map the areas of elevated radiation levels

A polygon soup representation for free viewpoint video

Science.gov (United States)

Colleu, T.; Pateux, S.; Morin, L.; Labit, C.

2010-02-01

This paper presents a polygon soup representation for multiview data. Starting from a sequence of multi-view video plus depth (MVD) data, the proposed representation takes into account, in a unified manner, different issues such as compactness, compression, and intermediate view synthesis. The representation is built in two steps. First, a set of 3D quads is extracted using a quadtree decomposition of the depth maps. Second, a selective elimination of the quads is performed in order to reduce inter-view redundancies and thus provide a compact representation. Moreover, the proposed methodology for extracting the representation allows to reduce ghosting artifacts. Finally, an adapted compression technique is proposed that limits coding artifacts. The results presented on two real sequences show that the proposed representation provides a good trade-off between rendering quality and data compactness.

Evaluating geographic imputation approaches for zip code level data: an application to a study of pediatric diabetes

Directory of Open Access Journals (Sweden)

Puett Robin C

2009-10-01

Full Text Available Abstract Background There is increasing interest in the study of place effects on health, facilitated in part by geographic information systems. Incomplete or missing address information reduces geocoding success. Several geographic imputation methods have been suggested to overcome this limitation. Accuracy evaluation of these methods can be focused at the level of individuals and at higher group-levels (e.g., spatial distribution. Methods We evaluated the accuracy of eight geo-imputation methods for address allocation from ZIP codes to census tracts at the individual and group level. The spatial apportioning approaches underlying the imputation methods included four fixed (deterministic and four random (stochastic allocation methods using land area, total population, population under age 20, and race/ethnicity as weighting factors. Data included more than 2,000 geocoded cases of diabetes mellitus among youth aged 0-19 in four U.S. regions. The imputed distribution of cases across tracts was compared to the true distribution using a chi-squared statistic. Results At the individual level, population-weighted (total or under age 20 fixed allocation showed the greatest level of accuracy, with correct census tract assignments averaging 30.01% across all regions, followed by the race/ethnicity-weighted random method (23.83%. The true distribution of cases across census tracts was that 58.2% of tracts exhibited no cases, 26.2% had one case, 9.5% had two cases, and less than 3% had three or more. This distribution was best captured by random allocation methods, with no significant differences (p-value > 0.90. However, significant differences in distributions based on fixed allocation methods were found (p-value Conclusion Fixed imputation methods seemed to yield greatest accuracy at the individual level, suggesting use for studies on area-level environmental exposures. Fixed methods result in artificial clusters in single census tracts. For studies

A Polygon and Point-Based Approach to Matching Geospatial Features

Directory of Open Access Journals (Sweden)

Juan J. Ruiz-Lendínez

2017-12-01

Full Text Available A methodology for matching bidimensional entities is presented in this paper. The matching is proposed for both area and point features extracted from geographical databases. The procedure used to obtain homologous entities is achieved in a two-step process: The first matching, polygon to polygon matching (inter-element matching, is obtained by means of a genetic algorithm that allows the classifying of area features from two geographical databases. After this, we apply a point to point matching (intra-element matching based on the comparison of changes in their turning functions. This study shows that genetic algorithms are suitable for matching polygon features even if these features are quite different. Our results show up to 40% of matched polygons with differences in geometrical attributes. With regards to point matching, the vertex from homologous polygons, the function and threshold values proposed in this paper show a useful method for obtaining precise vertex matching.

A numerical investigation of sub-wavelength resonances in polygonal metamaterial cylinders

DEFF Research Database (Denmark)

Arslanagic, Samel; Breinbjerg, Olav

2009-01-01

The sub-wavelength resonances, known to exist in metamaterial radiators and scatterers of circular cylindrical shape, are investigated with the aim of determining if these resonances also exist for polygonal cylinders and, if so, how they are affected by the shape of the polygon. To this end, a set...... of polygonal cylinders excited by a nearby electric line current is analyzed numerically and it is shown, through detailed analysis of the near-field distribution and radiation resistance, that these polygonal cylinders do indeed support sub-wavelength resonances similar to those of the circular cylinders...

LiZIP3 is a cellular zinc transporter that mediates the tightly regulated import of zinc in Leishmania infantum parasites

Science.gov (United States)

Carvalho, Sandra; da Silva, Rosa Barreira; Shawki, Ali; Castro, Helena; Lamy, Márcia; Eide, David; Costa, Vítor; Mackenzie, Bryan; Tomás, Ana M.

2016-01-01

Summary Cellular zinc homeostasis ensures that the intracellular concentration of this element is kept within limits that enable its participation in critical physiological processes without exerting toxic effects. We report here the identification and characterization of the first mediator of zinc homeostasis in Leishmania infantum, LiZIP3, a member of the ZIP family of divalent metal-ion transporters. The zinc transporter activity of LiZIP3 was first disclosed by its capacity to rescue the growth of Saccharomyces cerevisiae strains deficient in zinc acquisition. Subsequent expression of LiZIP3 in Xenopus laevis oocytes was shown to stimulate the uptake of a broad range of metal ions, among which Zn2+ was the preferred LiZIP3 substrate (K0.5 ≈ 0.1 μM). Evidence that LiZIP3 functions as a zinc importer in L. infantum came from the observations that the protein locates to the cell membrane and that its overexpression leads to augmented zinc internalization. Importantly, expression and cell-surface location of LiZIP3 are lost when parasites face high zinc bioavailability. LiZIP3 decline in response to zinc is regulated at the mRNA level in a process involving (a) short-lived protein(s). Collectively, our data reveal that LiZIP3 enables L. infantum to acquire zinc in a highly regulated manner, hence contributing to zinc homeostasis. PMID:25644708

Supramolecule-to-supramolecule transformations of coordination-driven self-assembled polygons.

Science.gov (United States)

Zhao, Liang; Northrop, Brian H; Stang, Peter J

2008-09-10

Two types of supramolecular transformations, wherein a self-assembled Pt(II)-pyridyl metal-organic polygon is controllably converted into an alternative polygon, have been achieved through the reaction between cobalt carbonyl and the acetylene moiety of a dipyridyl donor ligand. A [6 + 6] hexagon is transformed into two [3 + 3] hexagons, and a triangle-square mixture is converted into [2 + 2] rhomboids. 1H and 31P NMR spectra are used to track the transformation process and evaluate the yield of new self-assembled polygons. Such transformed species are identified by electrospray ionization (ESI) mass spectrometry. This new kind of supramolecule-to-supramolecule transformations provides a viable means for constructing, and then converting, new self-assembled polygons.

PolyFit: Polygonal Surface Reconstruction from Point Clouds

KAUST Repository

Nan, Liangliang; Wonka, Peter

2017-01-01

We propose a novel framework for reconstructing lightweight polygonal surfaces from point clouds. Unlike traditional methods that focus on either extracting good geometric primitives or obtaining proper arrangements of primitives, the emphasis of this work lies in intersecting the primitives (planes only) and seeking for an appropriate combination of them to obtain a manifold polygonal surface model without boundary.,We show that reconstruction from point clouds can be cast as a binary labeling problem. Our method is based on a hypothesizing and selection strategy. We first generate a reasonably large set of face candidates by intersecting the extracted planar primitives. Then an optimal subset of the candidate faces is selected through optimization. Our optimization is based on a binary linear programming formulation under hard constraints that enforce the final polygonal surface model to be manifold and watertight. Experiments on point clouds from various sources demonstrate that our method can generate lightweight polygonal surface models of arbitrary piecewise planar objects. Besides, our method is capable of recovering sharp features and is robust to noise, outliers, and missing data.

PolyFit: Polygonal Surface Reconstruction from Point Clouds

KAUST Repository

Nan, Liangliang

2017-12-25

We propose a novel framework for reconstructing lightweight polygonal surfaces from point clouds. Unlike traditional methods that focus on either extracting good geometric primitives or obtaining proper arrangements of primitives, the emphasis of this work lies in intersecting the primitives (planes only) and seeking for an appropriate combination of them to obtain a manifold polygonal surface model without boundary.,We show that reconstruction from point clouds can be cast as a binary labeling problem. Our method is based on a hypothesizing and selection strategy. We first generate a reasonably large set of face candidates by intersecting the extracted planar primitives. Then an optimal subset of the candidate faces is selected through optimization. Our optimization is based on a binary linear programming formulation under hard constraints that enforce the final polygonal surface model to be manifold and watertight. Experiments on point clouds from various sources demonstrate that our method can generate lightweight polygonal surface models of arbitrary piecewise planar objects. Besides, our method is capable of recovering sharp features and is robust to noise, outliers, and missing data.

Anisotropic rectangular metric for polygonal surface remeshing

KAUST Repository

Pellenard, Bertrand

2013-06-18

We propose a new method for anisotropic polygonal surface remeshing. Our algorithm takes as input a surface triangle mesh. An anisotropic rectangular metric, defined at each triangle facet of the input mesh, is derived from both a user-specified normal-based tolerance error and the requirement to favor rectangle-shaped polygons. Our algorithm uses a greedy optimization procedure that adds, deletes and relocates generators so as to match two criteria related to partitioning and conformity.

Anisotropic rectangular metric for polygonal surface remeshing

KAUST Repository

Pellenard, Bertrand; Morvan, Jean-Marie; Alliez, Pierre

2013-01-01

We propose a new method for anisotropic polygonal surface remeshing. Our algorithm takes as input a surface triangle mesh. An anisotropic rectangular metric, defined at each triangle facet of the input mesh, is derived from both a user-specified normal-based tolerance error and the requirement to favor rectangle-shaped polygons. Our algorithm uses a greedy optimization procedure that adds, deletes and relocates generators so as to match two criteria related to partitioning and conformity.

Polygons, Stars, and Clusters; an Investigation of Polygon Displays

Science.gov (United States)

1988-01-01

variables were chosen, nine in each case , to give reasonably complex polygons without being too complex. I have seen no reported studies of the relation...Pont. Catalina C Datsun 210, Toyota Corolla, Dodge Colt, Honda Civic, Mazda GLC, Subaru, Ford Fiesta, Plym. Champ Figure 6. Clusters on the basis of...Merc. Marquis, Pont. Catalina, Pont. Grand Prix C Datsun 210, Toyota Corolla, Dodge Colt, Honda Civic, Mazda GLC, Subaru, Ford Fiesta, Plym. Champ

Overexpression of ZmIRT1 and ZmZIP3 Enhances Iron and Zinc Accumulation in Transgenic Arabidopsis.

Directory of Open Access Journals (Sweden)

Suzhen Li

Full Text Available Iron and zinc are important micronutrients for both the growth and nutrient availability of crop plants, and their absorption is tightly controlled by a metal uptake system. Zinc-regulated transporters, iron-regulated transporter-like proteins (ZIP, is considered an essential metal transporter for the acquisition of Fe and Zn in graminaceous plants. Several ZIPs have been identified in maize, although their physiological function remains unclear. In this report, ZmIRT1 was shown to be specifically expressed in silk and embryo, whereas ZmZIP3 was a leaf-specific gene. Both ZmIRT1 and ZmZIP3 were shown to be localized to the plasma membrane and endoplasmic reticulum. In addition, transgenic Arabidopsis plants overexpressing ZmIRT1 or ZmZIP3 were generated, and the metal contents in various tissues of transgenic and wild-type plants were examined based on ICP-OES and Zinpyr-1 staining. The Fe and Zn concentration increased in roots and seeds of ZmIRT1-overexpressing plants, while the Fe content in shoots decreased. Overexpressing ZmZIP3 enhanced Zn accumulation in the roots of transgenic plants, while that in shoots was repressed. In addition, the transgenic plants showed altered tolerance to various Fe and Zn conditions compared with wild-type plants. Furthermore, the genes associated with metal uptake were stimulated in ZmIRT1 transgenic plants, while those involved in intra- and inter- cellular translocation were suppressed. In conclusion, ZmIRT1 and ZmZIP3 are functional metal transporters with different ion selectivities. Ectopic overexpression of ZmIRT1 may stimulate endogenous Fe uptake mechanisms, which may facilitate metal uptake and homeostasis. Our results increase our understanding of the functions of ZIP family transporters in maize.

Clastic polygonal networks around Lyot crater, Mars: Possible formation mechanisms from morphometric analysis

Science.gov (United States)

Brooker, L. M.; Balme, M. R.; Conway, S. J.; Hagermann, A.; Barrett, A. M.; Collins, G. S.; Soare, R. J.

2018-03-01

Polygonal networks of patterned ground are a common feature in cold-climate environments. They can form through the thermal contraction of ice-cemented sediment (i.e. formed from fractures), or the freezing and thawing of ground ice (i.e. formed by patterns of clasts, or ground deformation). The characteristics of these landforms provide information about environmental conditions. Analogous polygonal forms have been observed on Mars leading to inferences about environmental conditions. We have identified clastic polygonal features located around Lyot crater, Mars (50°N, 30°E). These polygons are unusually large (>100 m diameter) compared to terrestrial clastic polygons, and contain very large clasts, some of which are up to 15 metres in diameter. The polygons are distributed in a wide arc around the eastern side of Lyot crater, at a consistent distance from the crater rim. Using high-resolution imaging data, we digitised these features to extract morphological information. These data are compared to existing terrestrial and Martian polygon data to look for similarities and differences and to inform hypotheses concerning possible formation mechanisms. Our results show the clastic polygons do not have any morphometric features that indicate they are similar to terrestrial sorted, clastic polygons formed by freeze-thaw processes. They are too large, do not show the expected variation in form with slope, and have clasts that do not scale in size with polygon diameter. However, the clastic networks are similar in network morphology to thermal contraction cracks, and there is a potential direct Martian analogue in a sub-type of thermal contraction polygons located in Utopia Planitia. Based upon our observations, we reject the hypothesis that polygons located around Lyot formed as freeze-thaw polygons and instead an alternative mechanism is put forward: they result from the infilling of earlier thermal contraction cracks by wind-blown material, which then became

Structural characterization of the packings of granular regular polygons.

Science.gov (United States)

Wang, Chuncheng; Dong, Kejun; Yu, Aibing

2015-12-01

By using a recently developed method for discrete modeling of nonspherical particles, we simulate the random packings of granular regular polygons with three to 11 edges under gravity. The effects of shape and friction on the packing structures are investigated by various structural parameters, including packing fraction, the radial distribution function, coordination number, Voronoi tessellation, and bond-orientational order. We find that packing fraction is generally higher for geometrically nonfrustrated regular polygons, and can be increased by the increase of edge number and decrease of friction. The changes of packing fraction are linked with those of the microstructures, such as the variations of the translational and orientational orders and local configurations. In particular, the free areas of Voronoi tessellations (which are related to local packing fractions) can be described by log-normal distributions for all polygons. The quantitative analyses establish a clearer picture for the packings of regular polygons.

Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication

Directory of Open Access Journals (Sweden)

Xiao-Long Wang

2015-01-01

Full Text Available The basic leucine zipper (bZIP transcription factors are the most diverse members of dimerizing transcription factors. In the present study, 50, 116, and 47 bZIP genes were identified in Malus domestica (apple, Prunus persica (peach, and Fragaria vesca (strawberry, respectively. Species-specific duplication was the main contributor to the large number of bZIPs observed in apple. After WGD in apple genome, orthologous bZIP genes corresponding to strawberry on duplicated regions in apple genome were retained. However, in peach ancestor, these syntenic regions were quickly lost or deleted. Maybe the positive selection contributed to the expansion of clade S to adapt to the development and environment stresses. In addition, purifying selection was mainly responsible for bZIP sequence-specific DNA binding. The analysis of orthologous pairs between chromosomes indicates that these orthologs derived from one gene duplication located on one of the nine ancient chromosomes in the Rosaceae. The comparative analysis of bZIP genes in three species provides information on the evolutionary fate of bZIP genes in apple and peach after they diverged from strawberry.

Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte

Czech Academy of Sciences Publication Activity Database

Gibalová, A.; Steinbachová, L.; Hafidh, S.; Bláhová, Veronika; Gadiou, Z.; Michailidis, Ch.; Müller, K.; Pleskot, Roman; Dupľáková, N.; Honys, D.

2017-01-01

Roč. 30, č. 1 (2017), s. 1-17 ISSN 2194-7953 Institutional support: RVO:67985823 ; RVO:61388963 Keywords : bZIP * transcription factors * regulatory network * male gametophyte * Y2H * pollen development Subject RIV: ED - Physiology; CE - Biochemistry (UOCHB-X) OBOR OECD: Physiology (including cytology); Biochemistry and molecular biology (UOCHB-X) Impact factor: 2.629, year: 2016

Sequential and Parallel Algorithms for Finding a Maximum Convex Polygon

DEFF Research Database (Denmark)

Fischer, Paul

1997-01-01

This paper investigates the problem where one is given a finite set of n points in the plane each of which is labeled either ?positive? or ?negative?. We consider bounded convex polygons, the vertices of which are positive points and which do not contain any negative point. It is shown how...... such a polygon which is maximal with respect to area can be found in time O(n³ log n). With the same running time one can also find such a polygon which contains a maximum number of positive points. If, in addition, the number of vertices of the polygon is restricted to be at most M, then the running time...... becomes O(M n³ log n). It is also shown how to find a maximum convex polygon which contains a given point in time O(n³ log n). Two parallel algorithms for the basic problem are also presented. The first one runs in time O(n log n) using O(n²) processors, the second one has polylogarithmic time but needs O...

Deregulation of sucrose-controlled translation of a bZIP-type transcription factor results in sucrose accumulation in leaves.

Directory of Open Access Journals (Sweden)

Sunil Kumar Thalor

Full Text Available Sucrose is known to repress the translation of Arabidopsis thaliana AtbZIP11 transcript which encodes a protein belonging to the group of S (S--stands for small basic region-leucine zipper (bZIP-type transcription factor. This repression is called sucrose-induced repression of translation (SIRT. It is mediated through the sucrose-controlled upstream open reading frame (SC-uORF found in the AtbZIP11 transcript. The SIRT is reported for 4 other genes belonging to the group of S bZIP in Arabidopsis. Tobacco tbz17 is phylogenetically closely related to AtbZIP11 and carries a putative SC-uORF in its 5'-leader region. Here we demonstrate that tbz17 exhibits SIRT mediated by its SC-uORF in a manner similar to genes belonging to the S bZIP group of the Arabidopsis genus. Furthermore, constitutive transgenic expression of tbz17 lacking its 5'-leader region containing the SC-uORF leads to production of tobacco plants with thicker leaves composed of enlarged cells with 3-4 times higher sucrose content compared to wild type plants. Our finding provides a novel strategy to generate plants with high sucrose content.

Deregulation of sucrose-controlled translation of a bZIP-type transcription factor results in sucrose accumulation in leaves.

Science.gov (United States)

Thalor, Sunil Kumar; Berberich, Thomas; Lee, Sung Shin; Yang, Seung Hwan; Zhu, Xujun; Imai, Ryozo; Takahashi, Yoshihiro; Kusano, Tomonobu

2012-01-01

Sucrose is known to repress the translation of Arabidopsis thaliana AtbZIP11 transcript which encodes a protein belonging to the group of S (S--stands for small) basic region-leucine zipper (bZIP)-type transcription factor. This repression is called sucrose-induced repression of translation (SIRT). It is mediated through the sucrose-controlled upstream open reading frame (SC-uORF) found in the AtbZIP11 transcript. The SIRT is reported for 4 other genes belonging to the group of S bZIP in Arabidopsis. Tobacco tbz17 is phylogenetically closely related to AtbZIP11 and carries a putative SC-uORF in its 5'-leader region. Here we demonstrate that tbz17 exhibits SIRT mediated by its SC-uORF in a manner similar to genes belonging to the S bZIP group of the Arabidopsis genus. Furthermore, constitutive transgenic expression of tbz17 lacking its 5'-leader region containing the SC-uORF leads to production of tobacco plants with thicker leaves composed of enlarged cells with 3-4 times higher sucrose content compared to wild type plants. Our finding provides a novel strategy to generate plants with high sucrose content.

On the mean and variance of the writhe of random polygons

International Nuclear Information System (INIS)

Portillo, J; Scharein, R; Arsuaga, J; Vazquez, M; Diao, Y

2011-01-01

We here address two problems concerning the writhe of random polygons. First, we study the behavior of the mean writhe as a function length. Second, we study the variance of the writhe. Suppose that we are dealing with a set of random polygons with the same length and knot type, which could be the model of some circular DNA with the same topological property. In general, a simple way of detecting chirality of this knot type is to compute the mean writhe of the polygons; if the mean writhe is non-zero then the knot is chiral. How accurate is this method? For example, if for a specific knot type K the mean writhe decreased to zero as the length of the polygons increased, then this method would be limited in the case of long polygons. Furthermore, we conjecture that the sign of the mean writhe is a topological invariant of chiral knots. This sign appears to be the same as that of an 'ideal' conformation of the knot. We provide numerical evidence to support these claims, and we propose a new nomenclature of knots based on the sign of their expected writhes. This nomenclature can be of particular interest to applied scientists. The second part of our study focuses on the variance of the writhe, a problem that has not received much attention in the past. In this case, we focused on the equilateral random polygons. We give numerical as well as analytical evidence to show that the variance of the writhe of equilateral random polygons (of length n) behaves as a linear function of the length of the equilateral random polygon.

On the mean and variance of the writhe of random polygons.

Science.gov (United States)

Portillo, J; Diao, Y; Scharein, R; Arsuaga, J; Vazquez, M

We here address two problems concerning the writhe of random polygons. First, we study the behavior of the mean writhe as a function length. Second, we study the variance of the writhe. Suppose that we are dealing with a set of random polygons with the same length and knot type, which could be the model of some circular DNA with the same topological property. In general, a simple way of detecting chirality of this knot type is to compute the mean writhe of the polygons; if the mean writhe is non-zero then the knot is chiral. How accurate is this method? For example, if for a specific knot type K the mean writhe decreased to zero as the length of the polygons increased, then this method would be limited in the case of long polygons. Furthermore, we conjecture that the sign of the mean writhe is a topological invariant of chiral knots. This sign appears to be the same as that of an "ideal" conformation of the knot. We provide numerical evidence to support these claims, and we propose a new nomenclature of knots based on the sign of their expected writhes. This nomenclature can be of particular interest to applied scientists. The second part of our study focuses on the variance of the writhe, a problem that has not received much attention in the past. In this case, we focused on the equilateral random polygons. We give numerical as well as analytical evidence to show that the variance of the writhe of equilateral random polygons (of length n ) behaves as a linear function of the length of the equilateral random polygon.

Self-Assembly of Flux-Closure Polygons from Magnetite Nanocubes.

Science.gov (United States)

Szyndler, Megan W; Corn, Robert M

2012-09-06

Well-defined nanoscale flux-closure polygons (nanogons) have been fabricated on hydrophilic surfaces from the face-to-face self-assembly of magnetite nanocubes. Uniform ferrimagnetic magnetite nanocubes (∼86 nm) were synthesized and characterized with a combination of electron microscopy, diffraction, and magnetization measurements. The nanocubes were subsequently cast onto hydrophilic substrates, wherein the cubes lined up face-to-face and formed a variety of polygons due to magnetostatic and hydrophobic interactions. The generated surfaces consist primarily of three- and four-sided nanogons; polygons ranging from two to six sides were also observed. Further examination of the nanogons showed that the constraints of the face-to-face assembly of nanocubes often led to bowed sides, strained cube geometries, and mismatches at the acute angle vertices. Additionally, extra nanocubes were often present at the vertices, suggesting the presence of external magnetostatic fields at the polygon corners. These nanogons are inimitable nanoscale magnetic structures with potential applications in the areas of magnetic memory storage and high-frequency magnetics.

Small Scale Polygons and the History of Ground Ice on Mars

Science.gov (United States)

Mellon, Michael T.

2003-01-01

Recent progress on polygon modeling has focused on the diameter and surface relief that we expect of thermal-contraction polygons in martian permafrost. With this in mind, we developed a finite-element model of thermal-contraction-crack behavior in permafrost in a martian climate. This model was generated from a finite element code by Jay Melosh (called TECTON) originally developed for terrestrial and planetary crustal-deformation studies. We adapted this model to martian permafrost by including time (and temperature) dependent rheologies, boundary conditions, and isotropic thermal-contraction, as well as several small adaptations to a martian environment. We tested our model extensively, including comparison to an analytic solution of pre-fracture stress. We recently published an analysis of two potential sources of water for forming the recent gullies. In this work we first evaluated the potential for near-surface ground ice (in the top meter or so of soil) to melt under conditions of solar heating on sloped surfaces at high obliquity, utilizing both thermal and diffusion-based ground-ice-stability models; our results suggested that the ground ice will sublimate, and the ice table will recede to greater depths before the melting temperature can be reached. An exception can occur only for extremely salt-rich ice, depressing the freezing point.

Virginia ESI: INDEX (Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of all hardcopy cartographic products produced as part of the Environmental Sensitivity Index...

Material parameters characterization for arbitrary N-sided regular polygonal invisible cloak

International Nuclear Information System (INIS)

Wu Qun; Zhang Kuang; Meng Fanyi; Li Lewei

2009-01-01

Arbitrary N-sided regular polygonal cylindrical cloaks are proposed and designed based on the coordinate transformation theory. First, the general expressions of constitutive tensors of the N-sided regular polygonal cylindrical cloaks are derived, then there are some full-wave simulations of the cloaks that are composed of inhomogeneous and anisotropic metamaterials, which will bend incoming electromagnetic waves and guide them to propagate around the inner region; such electromagnetic waves will return to their original propagation directions without distorting the waves outside the polygonal cloak. The results of full-wave simulations validate the general expressions of constitutive tensors of the N-sided regular polygonal cylindrical cloaks we derived.

Convex lattice polygons of fixed area with perimeter-dependent weights.

Science.gov (United States)

Rajesh, R; Dhar, Deepak

2005-01-01

We study fully convex polygons with a given area, and variable perimeter length on square and hexagonal lattices. We attach a weight tm to a convex polygon of perimeter m and show that the sum of weights of all polygons with a fixed area s varies as s(-theta(conv))eK(t)square root(s) for large s and t less than a critical threshold tc, where K(t) is a t-dependent constant, and theta(conv) is a critical exponent which does not change with t. Using heuristic arguments, we find that theta(conv) is 1/4 for the square lattice, but -1/4 for the hexagonal lattice. The reason for this unexpected nonuniversality of theta(conv) is traced to existence of sharp corners in the asymptotic shape of these polygons.

Small-Scale Polygons and the History of Ground Ice on Mars

Science.gov (United States)

Mellon, Michael T.

2000-01-01

This research has laid a foundation for continued study of permafrost polygons on Mars using the models and understanding discussed here. Further study of polygonal patterns on Mars is proceeding (under new funding) which is expected to reveal more results about the origin of observed martian polygons and what information they contain regarding the recent history of tile martian climate and of water ice on Mars.

Beam envelope profile of non-centrosymmetric polygonal phase space

International Nuclear Information System (INIS)

Chen Yinbao; Xie Xi

1984-01-01

The general theory of beam envelope profile of non-centrosymmetric polygonal phase space is developed. By means of this theory the beam envelope profile of non-centrosymmetric polygonal phase space can be calculated directly. An example is carried out in detail to show the practical application of the theory

Maryland ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, anadromous, and freshwater fish species in Maryland. Vector polygons in this data...

Alabama ESI: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine and estuarine invertebrate species in Alabama. Vector polygons in this data set represent...

Virginia ESI: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, and rare invertebrate species in Virginia. Vector polygons in this data set...

Louisiana ESI: BIRDS (Bird Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for waterfowl species and shorebirds in coastal Louisiana. Vector polygons in this data set represent...

Virginia ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, anadromous, and brackishwater fish species in Virginia. Vector polygons in this data...

Louisiana ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for freshwater (inland) fish species in coastal Louisiana. Vector polygons represent water-bodies and other...

A simple algorithm for computing positively weighted straight skeletons of monotone polygons.

Science.gov (United States)

Biedl, Therese; Held, Martin; Huber, Stefan; Kaaser, Dominik; Palfrader, Peter

2015-02-01

We study the characteristics of straight skeletons of monotone polygonal chains and use them to devise an algorithm for computing positively weighted straight skeletons of monotone polygons. Our algorithm runs in [Formula: see text] time and [Formula: see text] space, where n denotes the number of vertices of the polygon.

Development of polygon elements based on the scaled boundary finite element method

International Nuclear Information System (INIS)

Chiong, Irene; Song Chongmin

2010-01-01

We aim to extend the scaled boundary finite element method to construct conforming polygon elements. The development of the polygonal finite element is highly anticipated in computational mechanics as greater flexibility and accuracy can be achieved using these elements. The scaled boundary polygonal finite element will enable new developments in mesh generation, better accuracy from a higher order approximation and better transition elements in finite element meshes. Polygon elements of arbitrary number of edges and order have been developed successfully. The edges of an element are discretised with line elements. The displacement solution of the scaled boundary finite element method is used in the development of shape functions. They are shown to be smooth and continuous within the element, and satisfy compatibility and completeness requirements. Furthermore, eigenvalue decomposition has been used to depict element modes and outcomes indicate the ability of the scaled boundary polygonal element to express rigid body and constant strain modes. Numerical tests are presented; the patch test is passed and constant strain modes verified. Accuracy and convergence of the method are also presented and the performance of the scaled boundary polygonal finite element is verified on Cook's swept panel problem. Results show that the scaled boundary polygonal finite element method outperforms a traditional mesh and accuracy and convergence are achieved from fewer nodes. The proposed method is also shown to be truly flexible, and applies to arbitrary n-gons formed of irregular and non-convex polygons.

Nanopatterning by molecular polygons.

Science.gov (United States)

Jester, Stefan-S; Sigmund, Eva; Höger, Sigurd

2011-07-27

Molecular polygons with three to six sides and binary mixtures thereof form long-range ordered patterns at the TCB/HOPG interface. This includes also the 2D crystallization of pentagons. The results provide an insight into how the symmetry of molecules is translated into periodic structures.

Metric inequalities for polygons

Directory of Open Access Journals (Sweden)

Adrian Dumitrescu

2013-07-01

Full Text Available Let A1,A2,…,An be the vertices of a polygon with unit perimeter, that is Σi |Ai Ai+1|=1. We derive various tight estimates on the minimum and maximum values of the sum of pairwise distances, and respectively sum of pairwise squared distances among its vertices. In most cases such estimates on these sums in the literature were known only for convex polygons.In the second part, we turn to a problem of Braß  regarding the maximum perimeter of a simplen-gon (n odd contained in a disk of unit radius. The problem was recently solved by Audet et al. 2009, who gave an exact formula. Here we present an alternative simpler proof of this formula. We then examine what happens if the simplicity condition is dropped, and obtain an exact formula for the maximum perimeter in this case as well.

Alabama ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, and freshwater fish species in Alabama. Vector polygons in this data set represent...

Zip Code Manager

Data.gov (United States)

Office of Personnel Management — The system used to associate what Federal Employees Health Benefits Program (FEHBP) and Federal Employees Dental/Vision Program (FEDVIP) health, dental, and vision...

Image segmentation by hierarchial agglomeration of polygons using ecological statistics

Science.gov (United States)

Prasad, Lakshman; Swaminarayan, Sriram

2013-04-23

A method for rapid hierarchical image segmentation based on perceptually driven contour completion and scene statistics is disclosed. The method begins with an initial fine-scale segmentation of an image, such as obtained by perceptual completion of partial contours into polygonal regions using region-contour correspondences established by Delaunay triangulation of edge pixels as implemented in VISTA. The resulting polygons are analyzed with respect to their size and color/intensity distributions and the structural properties of their boundaries. Statistical estimates of granularity of size, similarity of color, texture, and saliency of intervening boundaries are computed and formulated into logical (Boolean) predicates. The combined satisfiability of these Boolean predicates by a pair of adjacent polygons at a given segmentation level qualifies them for merging into a larger polygon representing a coarser, larger-scale feature of the pixel image and collectively obtains the next level of polygonal segments in a hierarchy of fine-to-coarse segmentations. The iterative application of this process precipitates textured regions as polygons with highly convolved boundaries and helps distinguish them from objects which typically have more regular boundaries. The method yields a multiscale decomposition of an image into constituent features that enjoy a hierarchical relationship with features at finer and coarser scales. This provides a traversable graph structure from which feature content and context in terms of other features can be derived, aiding in automated image understanding tasks. The method disclosed is highly efficient and can be used to decompose and analyze large images.

Hawaii ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for reef, marine, estuarine, and native stream fish species in coastal Hawaii. Vector polygons in this data...

Alabama ESI: REPTILES (Reptile Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for threatened/endangered and rare reptiles in Alabama. Vector polygons in this data set represent the rare...

Soils - Volusia County Soils (Polygons)

Data.gov (United States)

NSGIC Local Govt | GIS Inventory — Soils: 1:24000 SSURGO Map. Polygon boundaries of Soils in Volusia County, downloaded from SJRWMD and created by NRCS and SJRWMD. This data set is a digital version...

Conformal array design on arbitrary polygon surface with transformation optics

Energy Technology Data Exchange (ETDEWEB)

Deng, Li, E-mail: dengl@bupt.edu.cn; Hong, Weijun, E-mail: hongwj@bupt.edu.cn; Zhu, Jianfeng; Peng, Biao; Li, Shufang [Beijing Key Laboratory of Network System Architecture and Convergence, School of Information and Communication Engineering, Beijing University of Posts and Telecommunications, 100876 Beijing (China); Wu, Yongle, E-mail: wuyongle138@gmail.com [Beijing Key Laboratory of Work Safety Intelligent Monitoring, School of Electronic Engineering, Beijing University of Posts and Telecommunications, 100876 Beijing (China)

2016-06-15

A transformation-optics based method to design a conformal antenna array on an arbitrary polygon surface is proposed and demonstrated in this paper. This conformal antenna array can be adjusted to behave equivalently as a uniformly spaced linear array by applying an appropriate transformation medium. An typical example of general arbitrary polygon conformal arrays, not limited to circular array, is presented, verifying the proposed approach. In summary, the novel arbitrary polygon surface conformal array can be utilized in array synthesis and beam-forming, maintaining all benefits of linear array.

Conformal array design on arbitrary polygon surface with transformation optics

International Nuclear Information System (INIS)

Deng, Li; Hong, Weijun; Zhu, Jianfeng; Peng, Biao; Li, Shufang; Wu, Yongle

2016-01-01

A transformation-optics based method to design a conformal antenna array on an arbitrary polygon surface is proposed and demonstrated in this paper. This conformal antenna array can be adjusted to behave equivalently as a uniformly spaced linear array by applying an appropriate transformation medium. An typical example of general arbitrary polygon conformal arrays, not limited to circular array, is presented, verifying the proposed approach. In summary, the novel arbitrary polygon surface conformal array can be utilized in array synthesis and beam-forming, maintaining all benefits of linear array.

Co-evolution of polygonal and scalloped terrains, southwestern Utopia Planitia, Mars

Science.gov (United States)

Haltigin, T. W.; Pollard, W. H.; Dutilleul, P.; Osinski, G. R.; Koponen, L.

2014-02-01

Thermal contraction crack polygons and scalloped depressions, two of the most common landforms found in Utopia Planitia, Mars, have previously been linked to the presence of ice-rich deposits in the subsurface. Although the formation and evolution of these features individually are relatively well understood, little to no effort has been directed towards elucidating possible interactions that occur between them during their development. Thus, the overarching goal of this research was to investigate if there is an evolutionary link between polygonal and scalloped terrains by correlating metrics representing polygon and scallop maturity. A variety of statistical analyses were performed using HiRISE and MOLA datasets to quantify interactions between four sets of polygonal and scalloped terrains. Our results demonstrate the existence of a negative relationship between polygonal subdivision and surface elevation, indicating that polygon networks become more ‘evolved’ as the surface subsides. These results suggest that the permafrost landscape in Utopia Planitia may once have been extremely ice-rich, and that multiple geomorphic processes may be responsible for its evolution. Ultimately, this work demonstrates that landscape reconstruction is more complete when a system approach is followed, quantifying interactions between landforms as opposed to examining an individual landform in isolation.

Control Point Generated PLS - polygons

Data.gov (United States)

Minnesota Department of Natural Resources — The Control Point Generated PLS layer contains line and polygon features to the 1/4 of 1/4 PLS section (approximately 40 acres) and government lot level. The layer...

Hawaii ESI: INDEX (Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of the U.S. Geological Survey 1:24,000 topographic maps and other map and digital data boundaries...

Decompositions, partitions, and coverings with convex polygons and pseudo-triangles

NARCIS (Netherlands)

Aichholzer, O.; Huemer, C.; Kappes, S.; Speckmann, B.; Tóth, Cs.D.

2007-01-01

We propose a novel subdivision of the plane that consists of both convex polygons and pseudo-triangles. This pseudo-convex decomposition is significantly sparser than either convex decompositions or pseudo-triangulations for planar point sets and simple polygons. We also introduce pseudo-convex

137Cs in Research Polygon 'Sumbar'

International Nuclear Information System (INIS)

Skoko, B.; Marovic, G.; Babic, D.; Vickovic, I.

2011-01-01

In 2009, Radiation Protection Unit of the Institute for Medical Reseach and Occupational Health started a radioactivity measurement programme in research polygon ''Sumbar''. The purpose of these investigations is to collect as many data as possible about the contamination of the polygon that is mainly covered by a forest of English oak (Quercus robur) and hornbeam (Carpinus betulus). Once contaminated, forests represent long-term sources of radiation exposure to specific population groups which are using them as a source of foodstuffs. After the Chernobyl accident, researchers have shown that there has been more variability in radionuclide activity concentration in forests than in agricultural ecosystems. In order to carry out a radioactivity screening of the polygon, we randomly chosed three sampling sites for collecting soil, grass and moss samples. Different species of mushrooms were collected over the whole polygon area. The average activity concentration of 137Cs in soil for two sampling sites is (123 @ 9) Bq kg -1 , while the result for the third site is lower by an order of magnitude ((16.1@0.5) Bq kg -1 ). The activity concentration of 137Cs in grass samples ranges from (0.43 @ 0.03) Bq kg -1 to (13.2 @ 0.1) Bq kg -1 , and in moss samples from (8.7 @ 0.2) Bq kg -1 to (57.8 @ 0.3) Bq kg - 1. In five collected mushroom species, the activity of 137Cs is in the range between (4.1 @ 0.5) Bq kg -1 and (610 @ 5) Bq kg -1 , the lowest and the highest values referreing to Clitocybe nebularis and Gymnopus dryophilus, respectively. Parasitic mushrooms exhibit activity below the minimum detection level. Our preliminary results show and confirm variability of the activity concentration of 137Cs in different parts of this ecosystem. (author)

System and method for the adaptive mapping of matrix data to sets of polygons

Science.gov (United States)

Burdon, David (Inventor)

2003-01-01

A system and method for converting bitmapped data, for example, weather data or thermal imaging data, to polygons is disclosed. The conversion of the data into polygons creates smaller data files. The invention is adaptive in that it allows for a variable degree of fidelity of the polygons. Matrix data is obtained. A color value is obtained. The color value is a variable used in the creation of the polygons. A list of cells to check is determined based on the color value. The list of cells to check is examined in order to determine a boundary list. The boundary list is then examined to determine vertices. The determination of the vertices is based on a prescribed maximum distance. When drawn, the ordered list of vertices create polygons which depict the cell data. The data files which include the vertices for the polygons are much smaller than the corresponding cell data files. The fidelity of the polygon representation can be adjusted by repeating the logic with varying fidelity values to achieve a given maximum file size or a maximum number of vertices per polygon.

Structural control of polygonal cracks in La Pedriza del Manzanares (Madrid)

International Nuclear Information System (INIS)

Garcia-Rodriguez, M.; Aroztegui, J.; Lopez Portillo, H.

2015-01-01

Polygonal cracks represent a common way of modeling granite whose origin and evolution continues under study not even existing a systematization of these diverse structures. Some authors explain their origin by internal geo dynamic processes relating to movements of fracture planes in later stages of magmatic consolidation. Other authors attribute their formation and development to external factors related to climate regime. The great variety of polygonal cracks requires the use of a greater number of variables to define their different origins, the possible interrelations between external and internal factors, to explain the evolution of these structures and advance the classification of specific patterns. This work aims to contribute to systematize the mechanisms involved in the development of polygonal cracks. For that only polygonal cracks formed on flat vertical or sub vertical fractures are studied. In particular relations are established between the presence of polygonal cracks with: the fracturing network, height of appearance, angle and tilt of the wall, plaque morphology and depth of incision of the perimeter cracks. Moreover it establishes relationships between internal geo dynamic processes and external weathering processes. (Author)

Expression analysis of OsbZIP transcription factors in resistance ...

African Journals Online (AJOL)

zino

2013-08-21

Aug 21, 2013 ... Plant basic leucine zipper (bZIP) proteins play an essential role in the genes expression and regulation in higher plants. They have been shown to regulate diverse plant specific phenomena, including germination, floral induction and development, seed maturation, photomorphogenesis, biotic and.

Giant polygons and mounds in the lowlands of Mars: signatures of an ancient ocean?

Science.gov (United States)

Oehler, Dorothy Z; Allen, Carlton C

2012-06-01

This paper presents the hypothesis that the well-known giant polygons and bright mounds of the martian lowlands may be related to a common process-a process of fluid expulsion that results from burial of fine-grained sediments beneath a body of water. Specifically, we hypothesize that giant polygons and mounds in Chryse and Acidalia Planitiae are analogous to kilometer-scale polygons and mud volcanoes in terrestrial, marine basins and that the co-occurrence of masses of these features in Chryse and Acidalia may be the signature of sedimentary processes in an ancient martian ocean. We base this hypothesis on recent data from both Earth and Mars. On Earth, 3-D seismic data illustrate kilometer-scale polygons that may be analogous to the giant polygons on Mars. The terrestrial polygons form in fine-grained sediments that have been deposited and buried in passive-margin, marine settings. These polygons are thought to result from compaction/dewatering, and they are commonly associated with fluid expulsion features, such as mud volcanoes. On Mars, in Chryse and Acidalia Planitiae, orbital data demonstrate that giant polygons and mounds have overlapping spatial distributions. There, each set of features occurs within a geological setting that is seemingly analogous to that of the terrestrial, kilometer-scale polygons (broad basin of deposition, predicted fine-grained sediments, and lack of significant horizontal stress). Regionally, the martian polygons and mounds both show a correlation to elevation, as if their formation were related to past water levels. Although these observations are based on older data with incomplete coverage, a similar correlation to elevation has been established in one local area studied in detail with newer higher-resolution data. Further mapping with the latest data sets should more clearly elucidate the relationship(s) of the polygons and mounds to elevation over the entire Chryse-Acidalia region and thereby provide more insight into this

Equipartitioning and balancing points of polygons

Directory of Open Access Journals (Sweden)

Shunmugam Pillay

2010-07-01

Full Text Available The centre of mass G of a triangle has the property that the rays to the vertices from G sweep out triangles having equal areas. We show that such points, termed equipartitioning points in this paper, need not exist in other polygons. A necessary and sufficient condition for a quadrilateral to have an equipartitioning point is that one of its diagonals bisects the other. The general theorem, namely, necessary and sufficient conditions for equipartitioning points for arbitrary polygons to exist, is also stated and proved. When this happens, they are in general, distinct from the centre of mass. In parallelograms, and only in them, do the two points coincide.

Self-assembly of chiral molecular polygons.

Science.gov (United States)

Jiang, Hua; Lin, Wenbin

2003-07-09

Treatment of 2,2'-diacetyl-1,1'-binaphthyl-6,6'-bis(ethyne), L-H2, with 1 equiv of trans-Pt(PEt3)2Cl2 led to a mixture of different sizes of chiral metallocycles [trans-(PEt3)2Pt(L)]n (n = 3-8, 1-6). Each of the chiral molecular polygons 1-6 was purified by silica gel column chromatography and characterized by 1H, 13C{1H}, and 31P{1H} NMR spectroscopy, MS, IR, UV-vis, and circular dichroism spectroscopies, and microanalysis. The presence of tunable cavities (1.4-4.3 nm) and chiral functionalities in these molecular polygons promises to make them excellent receptors for a variety of guests.

Irradiation and contamination owed to nuclear weapons experimentations on the Kazakhstan Semipalatinsk polygon

International Nuclear Information System (INIS)

Chenal, C.

1996-01-01

Semipalatinsk in Kazakhstan was one of the nuclear weapons polygon for atmospheric, excavation and underground tests. After a description of the actual state of the polygon, a dosimetric approach inside and outside the polygon is presented from 1949 to 1989. (A.B.). 5 refs., 3 figs., 5 tabs

Polygon formation and surface flow on a rotating fluid surface

DEFF Research Database (Denmark)

Bergmann, Raymond; Tophøj, Laust Emil Hjerrild; Homan, T. A. M.

2011-01-01

We present a study of polygons forming on the free surface of a water flow confined to a stationary cylinder and driven by a rotating bottom plate as described by Jansson et al. (Phys. Rev. Lett., vol. 96, 2006, 174502). In particular, we study the case of a triangular structure, either completely...... there the symmetry breaking proceeds like a low-dimensional linear instability. We show that the circular state and the unstable manifold connecting it with the polygon solution are universal in the sense that very different initial conditions lead to the same circular state and unstable manifold. For a wet triangle......, we measure the surface flows by particle image velocimetry (PIV) and show that there are three vortices present, but that the strength of these vortices is far too weak to account for the rotation velocity of the polygon. We show that partial blocking of the surface flow destroys the polygons and re...

The packing of two species of polygons on the square lattice

International Nuclear Information System (INIS)

Dei Cont, David; Nienhuis, Bernard

2004-01-01

We decorate the square lattice with two species of polygons under the constraint that every lattice edge is covered by only one polygon and every vertex is visited by both types of polygons. We end up with a 24-vertex model which is known in the literature as the fully packed double loop model (FPL 2 ). In the particular case in which the fugacities of the polygons are the same, the model admits an exact solution. The solution is obtained using coordinate Bethe ansatz and provides a closed expression for the free energy. In particular, we find the free energy of the four-colouring model and the double Hamiltonian walk and recover the known entropy of the Ice model. When both fugacities are set equal to 2 the model undergoes an infinite-order phase transition

Polygons in Utopia

Science.gov (United States)

2005-01-01

14 April 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a typical view of polygon-cracked and pitted surfaces unique to western Utopia Planitia. No other place on Mars has this appearance. Some Mars scientists have speculated that ground ice may be responsible for these landforms. Location near: 42.3oN, 275.6oW Image width: 3 km (1.9 mi) Illumination from: lower left Season: Northern Summer

Decryption-decompression of AES protected ZIP files on GPUs

Science.gov (United States)

Duong, Tan Nhat; Pham, Phong Hong; Nguyen, Duc Huu; Nguyen, Thuy Thanh; Le, Hung Duc

2011-10-01

AES is a strong encryption system, so decryption-decompression of AES encrypted ZIP files requires very large computing power and techniques of reducing the password space. This makes implementations of techniques on common computing system not practical. In [1], we reduced the original very large password search space to a much smaller one which surely containing the correct password. Based on reduced set of passwords, in this paper, we parallel decryption, decompression and plain text recognition for encrypted ZIP files by using CUDA computing technology on graphics cards GeForce GTX295 of NVIDIA, to find out the correct password. The experimental results have shown that the speed of decrypting, decompressing, recognizing plain text and finding out the original password increases about from 45 to 180 times (depends on the number of GPUs) compared to sequential execution on the Intel Core 2 Quad Q8400 2.66 GHz. These results have demonstrated the potential applicability of GPUs in this cryptanalysis field.

Slow relaxation in weakly open rational polygons.

Science.gov (United States)

Kokshenev, Valery B; Vicentini, Eduardo

2003-07-01

The interplay between the regular (piecewise-linear) and irregular (vertex-angle) boundary effects in nonintegrable rational polygonal billiards (of m equal sides) is discussed. Decay dynamics in polygons (of perimeter P(m) and small opening Delta) is analyzed through the late-time survival probability S(m) approximately equal t(-delta). Two distinct slow relaxation channels are established. The primary universal channel exhibits relaxation of regular sliding orbits, with delta=1. The secondary channel is given by delta>1 and becomes open when m>P(m)/Delta. It originates from vertex order-disorder dual effects and is due to relaxation of chaoticlike excitations.

Interpolation Error Estimates for Mean Value Coordinates over Convex Polygons.

Science.gov (United States)

Rand, Alexander; Gillette, Andrew; Bajaj, Chandrajit

2013-08-01

In a similar fashion to estimates shown for Harmonic, Wachspress, and Sibson coordinates in [Gillette et al., AiCM, to appear], we prove interpolation error estimates for the mean value coordinates on convex polygons suitable for standard finite element analysis. Our analysis is based on providing a uniform bound on the gradient of the mean value functions for all convex polygons of diameter one satisfying certain simple geometric restrictions. This work makes rigorous an observed practical advantage of the mean value coordinates: unlike Wachspress coordinates, the gradient of the mean value coordinates does not become large as interior angles of the polygon approach π.

Characterization of a putative grapevine Zn transporter, VvZIP3, suggests its involvement in early reproductive development in Vitis vinifera L

Directory of Open Access Journals (Sweden)

Gainza-Cortés Felipe

2012-07-01

Full Text Available Abstract Background Zinc (Zn deficiency is one of the most widespread mineral nutritional problems that affect normal development in plants. Because Zn cannot passively diffuse across cell membranes, it must be transported into intracellular compartments for all biological processes where Zn is required. Several members of the Zinc-regulated transporters, Iron-regulated transporter-like Protein (ZIP gene family have been characterized in plants, and have shown to be involved in metal uptake and transport. This study describes the first putative Zn transporter in grapevine. Unravelling its function may explain an important symptom of Zn deficiency in grapevines, which is the production of clusters with fewer and usually smaller berries than normal. Results We identified and characterized a putative Zn transporter from berries of Vitis vinifera L., named VvZIP3. Compared to other members of the ZIP family identified in the Vitis vinifera L. genome, VvZIP3 is mainly expressed in reproductive tissue - specifically in developing flowers - which correlates with the high Zn accumulation in these organs. Contrary to this, the low expression of VvZIP3 in parthenocarpic berries shows a relationship with the lower Zn accumulation in this tissue than in normal seeded berries where its expression is induced by Zn. The predicted protein sequence indicates strong similarity with several members of the ZIP family from Arabidopsis thaliana and other species. Moreover, VvZIP3 complemented the growth defect of a yeast Zn-uptake mutant, ZHY3, and is localized in the plasma membrane of plant cells, suggesting that VvZIP3 has the function of a Zn uptake transporter. Conclusions Our results suggest that VvZIP3 encodes a putative plasma membrane Zn transporter protein member of the ZIP gene family that might play a role in Zn uptake and distribution during the early reproductive development in Vitis vinifera L., indicating that the availability of this micronutrient

Abscisic-acid-dependent basic leucine zipper (bZIP) transcription factors in plant abiotic stress.

Science.gov (United States)

Banerjee, Aditya; Roychoudhury, Aryadeep

2017-01-01

One of the major causes of significant crop loss throughout the world is the myriad of environmental stresses including drought, salinity, cold, heavy metal toxicity, and ultraviolet-B (UV-B) rays. Plants as sessile organisms have evolved various effective mechanism which enable them to withstand this plethora of stresses. Most of such regulatory mechanisms usually follow the abscisic-acid (ABA)-dependent pathway. In this review, we have primarily focussed on the basic leucine zipper (bZIP) transcription factors (TFs) activated by the ABA-mediated signalosome. Upon perception of ABA by specialized receptors, the signal is transduced via various groups of Ser/Thr kinases, which phosphorylate the bZIP TFs. Following such post-translational modification of TFs, they are activated so that they bind to specific cis-acting sequences called abscisic-acid-responsive elements (ABREs) or GC-rich coupling elements (CE), thereby influencing the expression of their target downstream genes. Several in silico techniques have been adopted so far to predict the structural features, recognize the regulatory modification sites, undergo phylogenetic analyses, and facilitate genome-wide survey of TF under multiple stresses. Current investigations on the epigenetic regulation that controls greater accessibility of the inducible regions of DNA of the target gene to the bZIP TFs exclusively under stress situations, along with the evolved stress memory responses via genomic imprinting mechanism, have been highlighted. The potentiality of overexpression of bZIP TFs, either in a homologous or in a heterologous background, in generating transgenic plants tolerant to various abiotic stressors have also been addressed by various groups. The present review will provide a coherent documentation on the functional characterization and regulation of bZIP TFs under multiple environmental stresses, with the major goal of generating multiple-stress-tolerant plant cultivars in near future.

ZmbZIP60 mRNA is spliced in maize in response to ER stress

Directory of Open Access Journals (Sweden)

Li Yanjie

2012-03-01

Full Text Available Abstract Background Adverse environmental conditions produce ER stress and elicit the unfolded protein response (UPR in plants. Plants are reported to have two "arms" of the ER stress signaling pathway-one arm involving membrane-bound transcription factors and the other involving a membrane-associated RNA splicing factor, IRE1. IRE1 in yeast to mammals recognizes a conserved twin loop structure in the target RNA. Results A segment of the mRNA encoding ZmbZIP60 in maize can be folded into a twin loop structure, and in response to ER stress this mRNA is spliced, excising a 20b intron. Splicing converts the predicted protein from a membrane-associated transcription factor to one that is targeted to the nucleus. Splicing of ZmbZIP60 can be elicited in maize seedlings by ER stress agents such as dithiothreitol (DTT or tunicamycin (TM or by heat treatment. Younger, rather than older seedlings display a more robust splicing response as do younger parts of leaf, along a developmental gradient in a leaf. The molecular signature of an ER stress response in plants includes the upregulation of Binding Protein (BIP genes. Maize has numerous BIP-like genes, and ER stress was found to upregulate one of these, ZmBIPb. Conclusions The splicing of ZmbZIP60 mRNA is an indicator of ER stress in maize seedlings resulting from adverse environmental conditions such as heat stress. ZmbZIP60 mRNA splicing in maize leads predictively to the formation of active bZIP transcription factor targeted to the nucleus to upregulate stress response genes. Among the genes upregulated by ER stress in maize is one of 22 BIP-like genes, ZmBIPb.

Measuring Historical Coastal Change using GIS and the Change Polygon Approach

Science.gov (United States)

Smith, M.J.; Cromley, R.G.

2012-01-01

This study compares two automated approaches, the transect-from-baseline technique and a new change polygon method, for quantifying historical coastal change over time. The study shows that the transect-from-baseline technique is complicated by choice of a proper baseline as well as generating transects that intersect with each other rather than with the nearest shoreline. The change polygon method captures the full spatial difference between the positions of the two shorelines and average coastal change is the defined as the ratio of the net area divided by the shoreline length. Although then change polygon method is sensitive to the definition and measurement of shoreline length, the results are more invariant to parameter changes than the transect-from-baseline method, suggesting that the change polygon technique may be a more robust coastal change method. ?? 2012 Blackwell Publishing Ltd.

High-order polygonal discontinuous Petrov-Galerkin (PolyDPG) methods using ultraweak formulations

Science.gov (United States)

Vaziri Astaneh, Ali; Fuentes, Federico; Mora, Jaime; Demkowicz, Leszek

2018-04-01

This work represents the first endeavor in using ultraweak formulations to implement high-order polygonal finite element methods via the discontinuous Petrov-Galerkin (DPG) methodology. Ultraweak variational formulations are nonstandard in that all the weight of the derivatives lies in the test space, while most of the trial space can be chosen as copies of $L^2$-discretizations that have no need to be continuous across adjacent elements. Additionally, the test spaces are broken along the mesh interfaces. This allows one to construct conforming polygonal finite element methods, termed here as PolyDPG methods, by defining most spaces by restriction of a bounding triangle or box to the polygonal element. The only variables that require nontrivial compatibility across elements are the so-called interface or skeleton variables, which can be defined directly on the element boundaries. Unlike other high-order polygonal methods, PolyDPG methods do not require ad hoc stabilization terms thanks to the crafted stability of the DPG methodology. A proof of convergence of the form $h^p$ is provided and corroborated through several illustrative numerical examples. These include polygonal meshes with $n$-sided convex elements and with highly distorted concave elements, as well as the modeling of discontinuous material properties along an arbitrary interface that cuts a uniform grid. Since PolyDPG methods have a natural a posteriori error estimator a polygonal adaptive strategy is developed and compared to standard adaptivity schemes based on constrained hanging nodes. This work is also accompanied by an open-source $\\texttt{PolyDPG}$ software supporting polygonal and conventional elements.

ZIP4H (TEX11 deficiency in the mouse impairs meiotic double strand break repair and the regulation of crossing over.

Directory of Open Access Journals (Sweden)

Carrie A Adelman

2008-03-01

Full Text Available We have recently shown that hypomorphic Mre11 complex mouse mutants exhibit defects in the repair of meiotic double strand breaks (DSBs. This is associated with perturbation of synaptonemal complex morphogenesis, repair and regulation of crossover formation. To further assess the Mre11 complex's role in meiotic progression, we identified testis-specific NBS1-interacting proteins via two-hybrid screening in yeast. In this screen, Zip4h (Tex11, a male germ cell specific X-linked gene was isolated. Based on sequence and predicted structural similarity to the S. cerevisiae and A. thaliana Zip4 orthologs, ZIP4H appears to be the mammalian ortholog. In S. cerevisiae and A. thaliana, Zip4 is a meiosis-specific protein that regulates the level of meiotic crossovers, thus influencing homologous chromosome segregation in these organisms. As is true for hypomorphic Nbs1 (Nbs1(DeltaB/DeltaB mice, Zip4h(-/Y mutant mice were fertile. Analysis of spermatocytes revealed a delay in meiotic double strand break repair and decreased crossover formation as inferred from DMC1 and MLH1 staining patterns, respectively. Achiasmate chromosomes at the first meiotic division were also observed in Zip4h(-/Y mutants, consistent with the observed reduction in MLH1 focus formation. These results indicate that meiotic functions of Zip4 family members are conserved and support the view that the Mre11 complex and ZIP4H interact functionally during the execution of the meiotic program in mammals.

MEMS variable capacitance devices utilizing the substrate: II. Zipping varactors

KAUST Repository

Elshurafa, Amro M.; El-Masry, Ezz I.

2010-01-01

and tested. To the best of our knowledge, these zipping varactors exhibit the best reported characteristics in PolyMUMPS to date within their category in terms of tuning range, quality factor, required actuation voltage and total area consumed. © 2010 IOP

Western Alaska ESI: INDEX (Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of all the hardcopy cartographic products produced as part of the Environmental Sensitivity Index...

Columbia River ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, anadromous, and freshwater fish species in Columbia River. Vector polygons in this...

Polygons of global undersea features for geographic searches

Science.gov (United States)

Hartwell, Stephen R.; Wingfield, Dana K.; Allwardt, Alan O.; Lightsom, Frances L.; Wong, Florence L.

2018-01-01

A shapefile of 311 undersea features from all major oceans and seas has been created as an aid for retrieving georeferenced information resources. Geospatial information systems with the capability to search user-defined, polygonal geographic areas will be able to utilize this shapefile or secondary products derived from it, such as linked data based on well-known text representations of the individual polygons within the shapefile. Version 1.1 of this report also includes a linked data representation of 299 of these features and their spatial extents.

Utopia Cracks and Polygons

Science.gov (United States)

2003-01-01

MGS MOC Release No. MOC2-339, 23 April 2003This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a pattern of polygonal cracks and aligned, elliptical pits in western Utopia Planitia. The picture covers an area about 3 km (about 1.9 mi) wide near 44.9oN, 274.7oW. Sunlight illuminates the scene from the left.

Columbia River ESI: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for clams, oysters, crabs, and other invertebrate species in Columbia River. Vector polygons in this data...

Southeast Alaska ESI: BIRDS (Bird Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for waterfowl in Southeast Alaska. Vector polygons in this data set represent locations of foraging and rafting...

Western Alaska ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, and anadromous fish species in Western Alaska. Vector polygons in this data set...

Finding the Maximal Area of Bounded Polygons in a Circle

Science.gov (United States)

Rokach, Arie

2005-01-01

The article deals with the area of polygons that are inscribed in a given circle. Naturally, the following question arises: Among all n-polygons that are inscribed in a given circle, which one has the biggest area? Intuitively, it may be guessed that is suitable for secondary students, and without any use id calculus, but only using very…

Western Alaska ESI: LAKES (Lake Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing lakes and land masses used in the creation of the Environmental Sensitivity Index (ESI) for Western Alaska. The...

Virginia ESI: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains boundaries for management areas, national parks, state and local parks, and wildlife refuges in Virginia. Vector polygons in this data set...

Louisiana ESI: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains boundaries for managed lands in coastal Louisiana. Vector polygons in this data set represent the management areas. Location-specific type and...

Southeast Alaska ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for estuarine, benthic, and pelagic fish in Southeast Alaska. Vector polygons in this data set represent locations of...

Long-term repetition priming with symmetrical polygons and words.

Science.gov (United States)

Kersteen-Tucker, Z

1991-01-01

In two different tasks, subjects were asked to make lexical decisions (word or nonword) and symmetry judgments (symmetrical or nonsymmetrical) about two-dimensional polygons. In both tasks, every stimulus was repeated at one of four lags (0, 1, 4, or 8 items interposed between the first and second stimulus presentations). This paradigm, known as repetition priming, revealed comparable short-term priming (Lag 0) and long-term priming (Lags 1, 4, and 8) both for symmetrical polygons and for words. A shorter term component (Lags 0 and 1) of priming was observed for nonwords, and only very short-term priming (Lag 0) was observed for nonsymmetrical polygons. These results indicate that response facilitation accruing from repeated exposure can be observed for stimuli that have no preexisting memory representations and suggest that perceptual factors contribute to repetition-priming effects.

Rotating polygon instability of a swirling free surface flow

DEFF Research Database (Denmark)

Tophøj, Laust Emil Hjerrild; Bohr, Tomas; Mougel, J.

2013-01-01

We explain the rotating polygon instability on a swirling fluid surface [G. H. Vatistas, J. Fluid Mech. 217, 241 (1990)JFLSA70022-1120 and Jansson et al., Phys. Rev. Lett. 96, 174502 (2006)PRLTAO0031-9007] in terms of resonant interactions between gravity waves on the outer part of the surface...... behavior near the corners), and indeed we show that we can obtain the polygons transiently by violently stirring liquid nitrogen in a hot container....

PET image reconstruction with rotationally symmetric polygonal pixel grid based highly compressible system matrix

International Nuclear Information System (INIS)

Yu Yunhan; Xia Yan; Liu Yaqiang; Wang Shi; Ma Tianyu; Chen Jing; Hong Baoyu

2013-01-01

To achieve a maximum compression of system matrix in positron emission tomography (PET) image reconstruction, we proposed a polygonal image pixel division strategy in accordance with rotationally symmetric PET geometry. Geometrical definition and indexing rule for polygonal pixels were established. Image conversion from polygonal pixel structure to conventional rectangular pixel structure was implemented using a conversion matrix. A set of test images were analytically defined in polygonal pixel structure, converted to conventional rectangular pixel based images, and correctly displayed which verified the correctness of the image definition, conversion description and conversion of polygonal pixel structure. A compressed system matrix for PET image recon was generated by tap model and tested by forward-projecting three different distributions of radioactive sources to the sinogram domain and comparing them with theoretical predictions. On a practical small animal PET scanner, a compress ratio of 12.6:1 of the system matrix size was achieved with the polygonal pixel structure, comparing with the conventional rectangular pixel based tap-mode one. OS-EM iterative image reconstruction algorithms with the polygonal and conventional Cartesian pixel grid were developed. A hot rod phantom was detected and reconstructed based on these two grids with reasonable time cost. Image resolution of reconstructed images was both 1.35 mm. We conclude that it is feasible to reconstruct and display images in a polygonal image pixel structure based on a compressed system matrix in PET image reconstruction. (authors)

Triangulating and guarding realistic polygons

NARCIS (Netherlands)

Aloupis, G.; Bose, P.; Dujmovic, V.; Gray, C.M.; Langerman, S.; Speckmann, B.

2014-01-01

We propose a new model of realistic input: k-guardable objects. An object is k-guardable if its boundary can be seen by k guards. We show that k-guardable polygons generalize two previously identified classes of realistic input. Following this, we give two simple algorithms for triangulating

Scaling behavior of knotted random polygons and self-avoiding polygons: Topological swelling with enhanced exponent.

Science.gov (United States)

Uehara, Erica; Deguchi, Tetsuo

2017-12-07

We show that the average size of self-avoiding polygons (SAPs) with a fixed knot is much larger than that of no topological constraint if the excluded volume is small and the number of segments is large. We call it topological swelling. We argue an "enhancement" of the scaling exponent for random polygons with a fixed knot. We study them systematically through SAP consisting of hard cylindrical segments with various different values of the radius of segments. Here we mean by the average size the mean-square radius of gyration. Furthermore, we show numerically that the topological balance length of a composite knot is given by the sum of those of all constituent prime knots. Here we define the topological balance length of a knot by such a number of segments that topological entropic repulsions are balanced with the knot complexity in the average size. The additivity suggests the local knot picture.

Fast incorporation of optical flow into active polygons.

Science.gov (United States)

Unal, Gozde; Krim, Hamid; Yezzi, Anthony

2005-06-01

In this paper, we first reconsider, in a different light, the addition of a prediction step to active contour-based visual tracking using an optical flow and clarify the local computation of the latter along the boundaries of continuous active contours with appropriate regularizers. We subsequently detail our contribution of computing an optical flow-based prediction step directly from the parameters of an active polygon, and of exploiting it in object tracking. This is in contrast to an explicitly separate computation of the optical flow and its ad hoc application. It also provides an inherent regularization effect resulting from integrating measurements along polygon edges. As a result, we completely avoid the need of adding ad hoc regularizing terms to the optical flow computations, and the inevitably arbitrary associated weighting parameters. This direct integration of optical flow into the active polygon framework distinguishes this technique from most previous contour-based approaches, where regularization terms are theoretically, as well as practically, essential. The greater robustness and speed due to a reduced number of parameters of this technique are additional and appealing features.

Triangulating and guarding realistic polygons

NARCIS (Netherlands)

Aloupis, G.; Bose, P.; Dujmovic, V.; Gray, C.M.; Langerman, S.; Speckmann, B.

2008-01-01

We propose a new model of realistic input: k-guardable objects. An object is k-guardable if its boundary can be seen by k guards in the interior of the object. In this abstract, we describe a simple algorithm for triangulating k-guardable polygons. Our algorithm, which is easily implementable, takes

Spectral analysis of point-vortex dynamics : first application to vortex polygons in a circular domain

NARCIS (Netherlands)

Speetjens, M.F.M.; Meleshko, V.V.; Heijst, van G.J.F.

2014-01-01

The present study addresses the classical problem of the dynamics and stability of a cluster of N point vortices of equal strength arranged in a polygonal configuration ("N-vortex polygons"). In unbounded domains, such N-vortex polygons are unconditionally stable for N

Genome-wide analysis of the HD-ZIP IV transcription factor family in Gossypium arboreum and GaHDG11 involved in osmotic tolerance in transgenic Arabidopsis.

Science.gov (United States)

Chen, Eryong; Zhang, Xueyan; Yang, Zhaoen; Wang, Xiaoqian; Yang, Zuoren; Zhang, Chaojun; Wu, Zhixia; Kong, Depei; Liu, Zhao; Zhao, Ge; Butt, Hamama Islam; Zhang, Xianlong; Li, Fuguang

2017-06-01

HD-ZIP IV proteins belong to the homeodomain-leucine zipper (HD-ZIP) transcription factor family and are involved in trichome development and drought stress in plants. Although some functions of the HD-ZIP IV group are well understood in Arabidopsis, little is known about their function in cotton. In this study, HD-ZIP genes were identified from three Gossypium species (G. arboreum, G. raimondii and G. hirsutum) and clustered into four families (HD-ZIP I, II, III and IV) to separate HD-ZIP IV from the other three families. Systematic analyses of phylogeny, gene structure, conserved domains, and expression profiles in different plant tissues and the expression patterns under osmotic stress in leaves were further conducted in G. arboreum. More importantly, ectopic overexpression of GaHDG11, a representative of the HD-ZIP IV family, confers enhanced osmotic tolerance in transgenic Arabidopsis plants, possibly due to elongated primary root length, lower water loss rates, high osmoprotectant proline levels, significant levels of antioxidants CAT, and/or SOD enzyme activity with reduced levels of MDA. Taken together, these observations may lay the foundation for future functional analysis of cotton HD-ZIP IV genes to unravel their biological roles in cotton.

DINÁMICA DE LA BIFURCACIÓN DE HOPF EN UNA CLASE DE MODELOS DE COMPETENCIA QUE EXHIBEN LA BIFURCACIÓN ZIP Hopf Bifurcation Dynamic in a Class of Competence Model Exhibiting Zip Bifurcation

Directory of Open Access Journals (Sweden)

Carlos Mario Escobar Callejas

2011-12-01

Full Text Available En el presente artículo de investigación se caracteriza el tipo de bifurcación de Hopf que se presenta en el fenómeno de la bifurcación de zip para un sistema tridimensional no lineal de ecuaciones diferenciales que satisface las condiciones planteadas por Butler y Farkas, las cuales modelan la competición de dos especies predadoras por una presa singular que se regenera. Se demuestra que en todas las variedades bidimensionales invariantes del sistema considerado se desarrolla una bifurcación de Hopf supercrítica lo cual es una extensión de algunos resultados sobre el tipo de bifurcación de Hopf que se forma en el fenómeno de la bifurcación de zip en sistema con respuesta funcional del predador del tipo Holling II, [1].This research article characterizes the type of Hopf bifurcation occurring in the Zip bifurcation phenomenon for a non-linear 3D system of differential equations which meets the conditions stated by Butler and Farkas to model competition of two predators struggling for a prey. It is shown that a supercritical Hopf bifurcation is developed in all invariant two-dimensional varieties of the system considered, which is an extension of some results about the kind of Hopf bifurcation which is formed in the Zip bifurcation phenomenon in a system with functional response of the Holling-type predator.

Investigation of the Development of 7th Grade Students’ Skills to Define, Construct and Classify Polygons with Cabri Geometry

Directory of Open Access Journals (Sweden)

Ahmet Yanık

2013-03-01

Full Text Available The aim of the study is to investigate the development of 7th Grade students’ skills to define, construct and classify polygons in geometry course with Cabri Geometry II Plus software geometry, an example of dynamic geometry software. The study used qualitative and quantitative research methods in accordance with the research objectives and focus, so it was designed as a mixed method research. The participants of the study were 21 7th Grade students, 11 girls and 10 boys, who were attending a secondary school in Eskişehir city center during 2012-2013 school year. As a source of qualitative data, four students in this class were selected for the interview. The data were collected with “Polygon Identification and Classification Scale”, one group pre-test and post-test in order to determine the level of development and significance level of the gender variable, and Cabri Geometry worksheets developed by the researchers. The quantitative data were analyzed with SPSS Statistics 20. Also, t-test and Wilcoxon test were used in data analysis. The data obtained from the interviews were analyzed through descriptive analysis. The qualitative data showed that the mean of correct answers given by the students to the questions in the Polygon Identification and Classification Scale was higher in the post-test than the pre-test. The ttest results for the pre-test and post-test mean scores and the results of the paired samples test showed a significant difference in favor of the post-test. There was no significant difference based on the gender variable. On the other hand, the data obtained from the interviews were coded under five different themes. The activities about the concept of formation showed that incorrect formations caused incorrect generalizations about the shapes. The study found that, as a result of the teaching practice in the study, hierarchical relations among polygons were expressed correctly. Finally, after the practice, the

The generation algorithm of arbitrary polygon animation based on dynamic correction

Directory of Open Access Journals (Sweden)

Hou Ya Wei

2016-01-01

Full Text Available This paper, based on the key-frame polygon sequence, proposes a method that makes use of dynamic correction to develop continuous animation. Firstly we use quadratic Bezier curve to interpolate the corresponding sides vector of polygon sequence consecutive frame and realize the continuity of animation sequences. And then, according to Bezier curve characteristic, we conduct dynamic regulation to interpolation parameters and implement the changing smoothness. Meanwhile, we take use of Lagrange Multiplier Method to correct the polygon and close it. Finally, we provide the concrete algorithm flow and present numerical experiment results. The experiment results show that the algorithm acquires excellent effect.

Global regularizing flows with topology preservation for active contours and polygons.

Science.gov (United States)

Sundaramoorthi, Ganesh; Yezzi, Anthony

2007-03-01

Active contour and active polygon models have been used widely for image segmentation. In some applications, the topology of the object(s) to be detected from an image is known a priori, despite a complex unknown geometry, and it is important that the active contour or polygon maintain the desired topology. In this work, we construct a novel geometric flow that can be added to image-based evolutions of active contours and polygons in order to preserve the topology of the initial contour or polygon. We emphasize that, unlike other methods for topology preservation, the proposed geometric flow continually adjusts the geometry of the original evolution in a gradual and graceful manner so as to prevent a topology change long before the curve or polygon becomes close to topology change. The flow also serves as a global regularity term for the evolving contour, and has smoothness properties similar to curvature flow. These properties of gradually adjusting the original flow and global regularization prevent geometrical inaccuracies common with simple discrete topology preservation schemes. The proposed topology preserving geometric flow is the gradient flow arising from an energy that is based on electrostatic principles. The evolution of a single point on the contour depends on all other points of the contour, which is different from traditional curve evolutions in the computer vision literature.

Experimental investigation into the mechanism of the polygonal wear of electric locomotive wheels

Science.gov (United States)

Tao, Gongquan; Wang, Linfeng; Wen, Zefeng; Guan, Qinghua; Jin, Xuesong

2018-06-01

Experiments were conducted at field sites to investigate the mechanism of the polygonal wear of electric locomotive wheels. The polygonal wear rule of electric locomotive wheels was obtained. Moreover, two on-track tests have been carried out to investigate the vibration characteristics of the electric locomotive's key components. The measurement results of wheels out-of-round show that most electric locomotive wheels exhibit polygonal wear. The main centre wavelength in the 1/3 octave bands is 200 mm and/or 160 mm. The test results of vibration characteristics indicate that the dominating frequency of the vertical acceleration measured on the axle box is approximately equal to the passing frequency of a polygonal wheel, and does not vary with the locomotive speed during the acceleration course. The wheelset modal analysis using the finite element method (FEM) indicates that the first bending resonant frequency of the wheelset is quite close to the main vibration frequency of the axle box. The FEM results are verified by the experimental modal analysis of the wheelset. Moreover, different plans were designed to verify whether the braking system and the locomotive's adhesion control have significant influence on the wheel polygon or not. The test results indicate that they are not responsible for the initiation of the wheel polygon. The first bending resonance of the wheelset is easy to be excited in the locomotive operation and it is the root cause of wheel polygon with centre wavelength of 200 mm in the 1/3 octave bands.

Exploring the bZIP transcription factor regulatory network in Neurospora crassa.

Science.gov (United States)

Tian, Chaoguang; Li, Jingyi; Glass, N Louise

2011-03-01

Transcription factors (TFs) are key nodes of regulatory networks in eukaryotic organisms, including filamentous fungi such as Neurospora crassa. The 178 predicted DNA-binding TFs in N. crassa are distributed primarily among six gene families, which represent an ancient expansion in filamentous ascomycete genomes; 98 TF genes show detectable expression levels during vegetative growth of N. crassa, including 35 that show a significant difference in expression level between hyphae at the periphery versus hyphae in the interior of a colony. Regulatory networks within a species genome include paralogous TFs and their respective target genes (TF regulon). To investigate TF network evolution in N. crassa, we focused on the basic leucine zipper (bZIP) TF family, which contains nine members. We performed baseline transcriptional profiling during vegetative growth of the wild-type and seven isogenic, viable bZIP deletion mutants. We further characterized the regulatory network of one member of the bZIP family, NCU03905. NCU03905 encodes an Ap1-like protein (NcAp-1), which is involved in resistance to multiple stress responses, including oxidative and heavy metal stress. Relocalization of NcAp-1 from the cytoplasm to the nucleus was associated with exposure to stress. A comparison of the NcAp-1 regulon with Ap1-like regulons in Saccharomyces cerevisiae, Schizosaccharomyces pombe, Candida albicans and Aspergillus fumigatus showed both conservation and divergence. These data indicate how N. crassa responds to stress and provide information on pathway evolution.

Expression Patterns and Correlations with Metabolic Markers of Zinc Transporters ZIP14 and ZNT1 in Obesity and Polycystic Ovary Syndrome

Science.gov (United States)

Maxel, Trine; Svendsen, Pernille Fog; Smidt, Kamille; Lauridsen, Jesper Krogh; Brock, Birgitte; Pedersen, Steen Bønlykke; Rungby, Jørgen; Larsen, Agnete

2017-01-01

Polycystic ovary syndrome (PCOS) is associated with infertility, increased androgen levels, and insulin resistance. In adipose tissue, zinc facilitates insulin signaling. Circulating zinc levels are altered in obesity, diabetes, and PCOS; and zinc supplementation can ameliorate metabolic disturbances in PCOS. In adipose tissue, expression of zinc influx transporter ZIP14 varies with body mass index (BMI), clinical markers of metabolic syndrome, and peroxisome proliferator-activated receptor gamma (PPARG). In this study, we investigated expression levels of ZIP14 and PPARG in subcutaneous adipose tissue of 36 PCOS women (17 lean and 19 obese women) compared with 23 healthy controls (7 lean and 16 obese women). Further, expression levels of zinc transporter ZIP9, a recently identified androgen receptor, and zinc efflux transporter ZNT1 were investigated, alongside lipid profile and markers of glucose metabolism [insulin degrading enzyme, retinol-binding protein 4 (RBP4), and glucose transporter 4 (GLUT4)]. We find that ZIP14 expression is reduced in obesity and positively correlates with PPARG expression, which is downregulated with increasing BMI. ZNT1 is upregulated in obesity, and both ZIP14 and ZNT1 expression significantly correlates with clinical markers of altered glucose metabolism. In addition, RBP4 and GLUT4 associate with obesity, but an association with PCOS as such was present only for PPARG and RBP4. ZIP14 and ZNT1 does not relate to clinical androgen status and ZIP9 is unaffected by all parameters investigated. In conclusion, our findings support the existence of a zinc dyshomeostasis in adipose tissue in metabolic disturbances including PCOS-related obesity. PMID:28303117

The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum.

Science.gov (United States)

Matthijs, Michiel; Fabris, Michele; Obata, Toshihiro; Foubert, Imogen; Franco-Zorrilla, José Manuel; Solano, Roberto; Fernie, Alisdair R; Vyverman, Wim; Goossens, Alain

2017-06-01

Diatoms are amongst the most important marine microalgae in terms of biomass, but little is known concerning the molecular mechanisms that regulate their versatile metabolism. Here, the pennate diatom Phaeodactylum tricornutum was studied at the metabolite and transcriptome level during nitrogen starvation and following imposition of three other stresses that impede growth. The coordinated upregulation of the tricarboxylic acid (TCA) cycle during the nitrogen stress response was the most striking observation. Through co-expression analysis and DNA binding assays, the transcription factor bZIP14 was identified as a regulator of the TCA cycle, also beyond the nitrogen starvation response, namely in diurnal regulation. Accordingly, metabolic and transcriptional shifts were observed upon overexpression of bZIP14 in transformed P. tricornutum cells. Our data indicate that the TCA cycle is a tightly regulated and important hub for carbon reallocation in the diatom cell during nutrient starvation and that bZIP14 is a conserved regulator of this cycle. © 2017 The Authors.

Microtopographic control on the ground thermal regime in ice wedge polygons

Science.gov (United States)

Abolt, Charles J.; Young, Michael H.; Atchley, Adam L.; Harp, Dylan R.

2018-06-01

The goal of this research is to constrain the influence of ice wedge polygon microtopography on near-surface ground temperatures. Ice wedge polygon microtopography is prone to rapid deformation in a changing climate, and cracking in the ice wedge depends on thermal conditions at the top of the permafrost; therefore, feedbacks between microtopography and ground temperature can shed light on the potential for future ice wedge cracking in the Arctic. We first report on a year of sub-daily ground temperature observations at 5 depths and 9 locations throughout a cluster of low-centered polygons near Prudhoe Bay, Alaska, and demonstrate that the rims become the coldest zone of the polygon during winter, due to thinner snowpack. We then calibrate a polygon-scale numerical model of coupled thermal and hydrologic processes against this dataset, achieving an RMSE of less than 1.1 °C between observed and simulated ground temperature. Finally, we conduct a sensitivity analysis of the model by systematically manipulating the height of the rims and the depth of the troughs and tracking the effects on ice wedge temperature. The results indicate that winter temperatures in the ice wedge are sensitive to both rim height and trough depth, but more sensitive to rim height. Rims act as preferential outlets of subsurface heat; increasing rim size decreases winter temperatures in the ice wedge. Deeper troughs lead to increased snow entrapment, promoting insulation of the ice wedge. The potential for ice wedge cracking is therefore reduced if rims are destroyed or if troughs subside, due to warmer conditions in the ice wedge. These findings can help explain the origins of secondary ice wedges in modern and ancient polygons. The findings also imply that the potential for re-establishing rims in modern thermokarst-affected terrain will be limited by reduced cracking activity in the ice wedges, even if regional air temperatures stabilize.

Total curvature and total torsion of knotted random polygons in confinement

Science.gov (United States)

Diao, Yuanan; Ernst, Claus; Rawdon, Eric J.; Ziegler, Uta

2018-04-01

Knots in nature are typically confined spatially. The confinement affects the possible configurations, which in turn affects the spectrum of possible knot types as well as the geometry of the configurations within each knot type. The goal of this paper is to determine how confinement, length, and knotting affect the total curvature and total torsion of random polygons. Previously published papers have investigated these effects in the unconstrained case. In particular, we analyze how the total curvature and total torsion are affected by (1) varying the length of polygons within a fixed confinement radius and (2) varying the confinement radius of polygons with a fixed length. We also compare the total curvature and total torsion of groups of knots with similar complexity (measured as crossing number). While some of our results fall in line with what has been observed in the studies of the unconfined random polygons, a few surprising results emerge from our study, showing some properties that are unique due to the effect of knotting in confinement.

BFACF-style algorithms for polygons in the body-centered and face-centered cubic lattices

Energy Technology Data Exchange (ETDEWEB)

Janse van Rensburg, E J [Department of Mathematics and Statistics, York University, Toronto, Ontario M3J 1P3 (Canada); Rechnitzer, A, E-mail: rensburg@yorku.ca, E-mail: andrewr@math.ubc.ca [Department of Mathematics, The University of British Columbia, Vancouver V6T 1Z2, British Columbia (Canada)

2011-04-22

In this paper, the elementary moves of the BFACF-algorithm (Aragao de Carvalho and Caracciolo 1983 Phys. Rev. B 27 1635-45, Aragao de Carvalho and Caracciolo 1983 Nucl. Phys. B 215 209-48, Berg and Foester 1981 Phys. Lett. B 106 323-6) for lattice polygons are generalized to elementary moves of BFACF-style algorithms for lattice polygons in the body-centered (BCC) and face-centered (FCC) cubic lattices. We prove that the ergodicity classes of these new elementary moves coincide with the knot types of unrooted polygons in the BCC and FCC lattices and so expand a similar result for the cubic lattice (see Janse van Rensburg and Whittington (1991 J. Phys. A: Math. Gen. 24 5553-67)). Implementations of these algorithms for knotted polygons using the GAS algorithm produce estimates of the minimal length of knotted polygons in the BCC and FCC lattices.

BFACF-style algorithms for polygons in the body-centered and face-centered cubic lattices

Science.gov (United States)

Janse van Rensburg, E. J.; Rechnitzer, A.

2011-04-01

In this paper, the elementary moves of the BFACF-algorithm (Aragão de Carvalho and Caracciolo 1983 Phys. Rev. B 27 1635-45, Aragão de Carvalho and Caracciolo 1983 Nucl. Phys. B 215 209-48, Berg and Foester 1981 Phys. Lett. B 106 323-6) for lattice polygons are generalized to elementary moves of BFACF-style algorithms for lattice polygons in the body-centered (BCC) and face-centered (FCC) cubic lattices. We prove that the ergodicity classes of these new elementary moves coincide with the knot types of unrooted polygons in the BCC and FCC lattices and so expand a similar result for the cubic lattice (see Janse van Rensburg and Whittington (1991 J. Phys. A: Math. Gen. 24 5553-67)). Implementations of these algorithms for knotted polygons using the GAS algorithm produce estimates of the minimal length of knotted polygons in the BCC and FCC lattices.

BFACF-style algorithms for polygons in the body-centered and face-centered cubic lattices

International Nuclear Information System (INIS)

Janse van Rensburg, E J; Rechnitzer, A

2011-01-01

In this paper, the elementary moves of the BFACF-algorithm (Aragao de Carvalho and Caracciolo 1983 Phys. Rev. B 27 1635-45, Aragao de Carvalho and Caracciolo 1983 Nucl. Phys. B 215 209-48, Berg and Foester 1981 Phys. Lett. B 106 323-6) for lattice polygons are generalized to elementary moves of BFACF-style algorithms for lattice polygons in the body-centered (BCC) and face-centered (FCC) cubic lattices. We prove that the ergodicity classes of these new elementary moves coincide with the knot types of unrooted polygons in the BCC and FCC lattices and so expand a similar result for the cubic lattice (see Janse van Rensburg and Whittington (1991 J. Phys. A: Math. Gen. 24 5553-67)). Implementations of these algorithms for knotted polygons using the GAS algorithm produce estimates of the minimal length of knotted polygons in the BCC and FCC lattices.

Louisiana ESI: REPTILES (Reptile and Amphibian Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for reptiles and amphibians in coastal Louisiana. Vector polygons represent reptile and amphibian habitats,...

Louisiana ESI: T_MAMMAL (Terrestrial Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for terrestrial mammals in Louisiana. Vector polygons in this data set represent terrestrial mammal...

Isolation and expression analysis of four HD-ZIP III family genes targeted by microRNA166 in peach.

Science.gov (United States)

Zhang, C H; Zhang, B B; Ma, R J; Yu, M L; Guo, S L; Guo, L

2015-10-30

MicroRNA166 (miR166) is known to have highly conserved targets that encode proteins of the class III homeodomain-leucine zipper (HD-ZIP III) family, in a broad range of plant species. To further understand the relationship between HD-ZIP III genes and miR166, four HD-ZIP III family genes (PpHB14, PpHB15, PpHB8, and PpREV) were isolated from peach (Prunus persica) tissue and characterized. Spatio-temporal expression profiles of the genes were analyzed. Genes of the peach HD-ZIP III family were predicted to encode five conserved domains. Deduced amino acid sequences and tertiary structures of the four peach HD-ZIP III genes were highly conserved, with corresponding genes in Arabidopsis thaliana. The expression level of four targets displayed the opposite trend to that of miR166 throughout fruit development, with the exception of PpHB14 from 35 to 55 days after full bloom (DAFB). This finding indicates that miR166 may negatively regulate its four targets throughout fruit development. As for leaf and phloem, the same trend in expression level was observed between four targets and miR166 from 75 to 105 DAFB. However, the opposite trend was observed for the transcript level between four targets and miR166 from 35 to 55 DAFB. miRNA166 may negatively regulate four targets in some but not all developmental stages for a given tissue. The four genes studied were observed to have, exactly or generally, the same change tendency as individual tissue development, a finding that suggests genes of the HD-ZIP III family in peach may have complementary or cooperative functions in various tissues.

A Polygon Model for Wireless Sensor Network Deployment with Directional Sensing Areas

Science.gov (United States)

Wu, Chun-Hsien; Chung, Yeh-Ching

2009-01-01

The modeling of the sensing area of a sensor node is essential for the deployment algorithm of wireless sensor networks (WSNs). In this paper, a polygon model is proposed for the sensor node with directional sensing area. In addition, a WSN deployment algorithm is presented with topology control and scoring mechanisms to maintain network connectivity and improve sensing coverage rate. To evaluate the proposed polygon model and WSN deployment algorithm, a simulation is conducted. The simulation results show that the proposed polygon model outperforms the existed disk model and circular sector model in terms of the maximum sensing coverage rate. PMID:22303159

Modeling of chromosome intermingling by partially overlapping uniform random polygons.

Science.gov (United States)

Blackstone, T; Scharein, R; Borgo, B; Varela, R; Diao, Y; Arsuaga, J

2011-03-01

During the early phase of the cell cycle the eukaryotic genome is organized into chromosome territories. The geometry of the interface between any two chromosomes remains a matter of debate and may have important functional consequences. The Interchromosomal Network model (introduced by Branco and Pombo) proposes that territories intermingle along their periphery. In order to partially quantify this concept we here investigate the probability that two chromosomes form an unsplittable link. We use the uniform random polygon as a crude model for chromosome territories and we model the interchromosomal network as the common spatial region of two overlapping uniform random polygons. This simple model allows us to derive some rigorous mathematical results as well as to perform computer simulations easily. We find that the probability that one uniform random polygon of length n that partially overlaps a fixed polygon is bounded below by 1 − O(1/√n). We use numerical simulations to estimate the dependence of the linking probability of two uniform random polygons (of lengths n and m, respectively) on the amount of overlapping. The degree of overlapping is parametrized by a parameter [Formula: see text] such that [Formula: see text] indicates no overlapping and [Formula: see text] indicates total overlapping. We propose that this dependence relation may be modeled as f (ε, m, n) = [Formula: see text]. Numerical evidence shows that this model works well when [Formula: see text] is relatively large (ε ≥ 0.5). We then use these results to model the data published by Branco and Pombo and observe that for the amount of overlapping observed experimentally the URPs have a non-zero probability of forming an unsplittable link.

A genome-wide survey of homeodomain-leucine zipper genes and analysis of cold-responsive HD-Zip I members' expression in tomato.

Science.gov (United States)

Zhang, Zhenzhu; Chen, Xiuling; Guan, Xin; Liu, Yang; Chen, Hongyu; Wang, Tingting; Mouekouba, Liana Dalcantara Ongouya; Li, Jingfu; Wang, Aoxue

2014-01-01

Homeodomain-leucine zipper (HD-Zip) proteins are a kind of transcriptional factors that play a vital role in plant growth and development. However, no detailed information of HD-Zip family in tomato has been reported till now. In this study, 51 HD-Zip genes (SlHZ01-51) in this family were identified and categorized into 4 classes by exon-intron and protein structure in tomato (Solanum lycopersicum) genome. The synthetical phylogenetic tree of tomato, Arabidopsis and rice HD-Zip genes were established for an insight into their evolutionary relationships and putative functions. The results showed that the contribution of segmental duplication was larger than that of tandem duplication for expansion and evolution of genes in this family of tomato. The expression profile results under abiotic stress suggested that all SlHZ I genes were responsive to cold stress. This study will provide a clue for the further investigation of functional identification and the role of tomato HD-Zip I subfamily in plant cold stress responses and developmental events.

Properties of regular polygons of coupled microring resonators.

Science.gov (United States)

Chremmos, Ioannis; Uzunoglu, Nikolaos

2007-11-01

The resonant properties of a closed and symmetric cyclic array of N coupled microring resonators (coupled-microring resonator regular N-gon) are for the first time determined analytically by applying the transfer matrix approach and Floquet theorem for periodic propagation in cylindrically symmetric structures. By solving the corresponding eigenvalue problem with the field amplitudes in the rings as eigenvectors, it is shown that, for even or odd N, this photonic molecule possesses 1 + N/2 or 1+N resonant frequencies, respectively. The condition for resonances is found to be identical to the familiar dispersion equation of the infinite coupled-microring resonator waveguide with a discrete wave vector. This result reveals the so far latent connection between the two optical structures and is based on the fact that, for a regular polygon, the field transfer matrix over two successive rings is independent of the polygon vertex angle. The properties of the resonant modes are discussed in detail using the illustration of Brillouin band diagrams. Finally, the practical application of a channel-dropping filter based on polygons with an even number of rings is also analyzed.

Western Alaska ESI: HYDRO (Land Mass Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing coastal hydrography that defines the primary land masses used in the creation of the Environmental Sensitivity...

Louisiana ESI: LG_INDEX (Large Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of all the hardcopy cartographic products produced as part of the Environmental Sensitivity Index...

Activation of the Arabidopsis membrane-bound transcription factor bZIP28 is mediated by site-2 protease, but not site-1 protease.

Science.gov (United States)

Iwata, Yuji; Ashida, Makoto; Hasegawa, Chisa; Tabara, Kazuki; Mishiba, Kei-Ichiro; Koizumi, Nozomu

2017-08-01

The unfolded protein response (UPR) is a homeostatic cellular response conserved in eukaryotic cells to alleviate the accumulation of unfolded proteins in the endoplasmic reticulum (ER). Arabidopsis bZIP28 is a membrane-bound transcription factor activated by proteolytic cleavage in response to ER stress, thereby releasing its cytosolic portion containing the bZIP domain from the membrane to translocate into the nucleus where it induces the transcription of genes encoding ER-resident molecular chaperones and folding enzymes. It has been widely recognized that the proteolytic activation of bZIP28 is mediated by the sequential cleavage of site-1 protease (S1P) and site-2 protease (S2P). In the present study we provide evidence that bZIP28 protein is cleaved by S2P, but not by S1P. We demonstrated that wild-type and s1p mutant plants produce the active, nuclear form of bZIP28 in response to the ER stress inducer tunicamycin. In contrast, tunicamycin-treated s2p mutants do not accumulate the active, nuclear form of bZIP28. Consistent with these observations, s2p mutants, but not s1p mutants, exhibited a defective transcriptional response of ER stress-responsive genes and significantly higher sensitivity to tunicamycin. Interestingly, s2p mutants accumulate two membrane-bound bZIP28 fragments with a shorter ER lumen-facing C-terminal domain. Importantly, the predicted cleavage sites are located far from the canonical S1P recognition motif previously described. We propose that ER stress-induced proteolytic activation of bZIP28 is mediated by the sequential actions of as-yet-unidentified protease(s) and S2P, and does not require S1P. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Meter-scale thermal contraction crack polygons on the nucleus of comet 67P/Churyumov-Gerasimenko

Science.gov (United States)

Auger, A.-T.; Groussin, O.; Jorda, L.; El-Maarry, M. R.; Bouley, S.; Séjourné, A.; Gaskell, R.; Capanna, C.; Davidsson, B.; Marchi, S.; Höfner, S.; Lamy, P. L.; Sierks, H.; Barbieri, C.; Rodrigo, R.; Koschny, D.; Rickman, H.; Keller, H. U.; Agarwal, J.; A'Hearn, M. F.; Barucci, M. A.; Bertaux, J.-L.; Bertini, I.; Cremonese, G.; Da Deppo, V.; Debei, S.; De Cecco, M.; Fornasier, S.; Fulle, M.; Gutiérrez, P. J.; Güttler, C.; Hviid, S.; Ip, W.-H.; Knollenberg, J.; Kramm, J.-R.; Kührt, E.; Küppers, M.; Lara, L. M.; Lazzarin, M.; Lopez Moreno, J. J.; Marzari, F.; Massironi, M.; Michalik, H.; Naletto, G.; Oklay, N.; Pommerol, A.; Sabau, L.; Thomas, N.; Tubiana, C.; Vincent, J.-B.; Wenzel, K.-P.

2018-02-01

We report on the detection and characterization of more than 6300 polygons on the surface of the nucleus of comet 67P/Churyumov-Gerasimenko, using images acquired by the OSIRIS camera onboard Rosetta between August 2014 and March 2015. They are found in consolidated terrains and grouped in localized networks. They are present at all latitudes (from North to South) and longitudes (head, neck, and body), sometimes on pit walls or following lineaments. About 1.5% of the observed surface is covered by polygons. Polygons have an homogeneous size across the nucleus, with 90% of them in the size range 1 - 5 m and a mean size of 3.0 ± 1.4 m. They show different morphologies, depending on the width and depth of their trough. They are found in networks with 3- or 4-crack intersection nodes. The polygons observed on 67P are consistent with thermal contraction crack polygons formed by the diurnal or seasonal temperature variations in a hard (MPa) and consolidated sintered layer of water ice, located a few centimeters below the surface. Our thermal analysis shows an evolution of thermal contraction crack polygons according to the local thermal environment, with more evolved polygons (i.e. deeper and larger troughs) where the temperature and the diurnal and seasonal temperature range are the highest. Thermal contraction crack polygons are young surface morphologies that probably formed after the injection of 67P in the inner solar system, typically 100,000 years ago, and could be as young as a few orbital periods, following the decreasing of its perihelion distance in 1959 from 2.7 to 1.3 a.u. Meter scale thermal contraction crack polygons should be common features on the nucleus of Jupiter family comets.

Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte

Czech Academy of Sciences Publication Activity Database

Gibalová, Antónia; Steinbachová, Lenka; Hafidh, Said; Bláhová, Veronika; Gadiou, Zuzana; Michailidis, Christos; Müller, Karel; Pleskot, Roman; Dupľáková, Nikoleta; Honys, David

2017-01-01

Roč. 30, č. 1 (2017), s. 1-17 ISSN 2194-7953 R&D Projects: GA ČR GA15-22720S; GA ČR(CZ) GA14-32292S; GA ČR GP13-41444P; GA MŠk(CZ) LD14109 Institutional support: RVO:61389030 Keywords : reticulum stress-response * transcription factor * arabidopsis-thaliana * molecular-interactions * plant transformation * gene-expression * heterodimerization * dimerization * evolution * specificity * bZIP * Transcription factors * Regulatory network * Male gametophyte * y2h * Pollen development Subject RIV: ED - Physiology OBOR OECD: Plant sciences, botany Impact factor: 2.629, year: 2016

In-gap corner states in core-shell polygonal quantum rings.

Science.gov (United States)

Sitek, Anna; Ţolea, Mugurel; Niţă, Marian; Serra, Llorenç; Gudmundsson, Vidar; Manolescu, Andrei

2017-01-10

We study Coulomb interacting electrons confined in polygonal quantum rings. We focus on the interplay of localization at the polygon corners and Coulomb repulsion. Remarkably, the Coulomb repulsion allows the formation of in-gap states, i.e., corner-localized states of electron pairs or clusters shifted to energies that were forbidden for non-interacting electrons, but below the energies of corner-side-localized states. We specify conditions allowing optical excitation to those states.

In-gap corner states in core-shell polygonal quantum rings

Science.gov (United States)

Sitek, Anna; Ţolea, Mugurel; Niţă, Marian; Serra, Llorenç; Gudmundsson, Vidar; Manolescu, Andrei

2017-01-01

We study Coulomb interacting electrons confined in polygonal quantum rings. We focus on the interplay of localization at the polygon corners and Coulomb repulsion. Remarkably, the Coulomb repulsion allows the formation of in-gap states, i.e., corner-localized states of electron pairs or clusters shifted to energies that were forbidden for non-interacting electrons, but below the energies of corner-side-localized states. We specify conditions allowing optical excitation to those states.

Knot probability of polygons subjected to a force: a Monte Carlo study

International Nuclear Information System (INIS)

Rensburg, E J Janse van; Orlandini, E; Tesi, M C; Whittington, S G

2008-01-01

We use Monte Carlo methods to study the knot probability of lattice polygons on the cubic lattice in the presence of an external force f. The force is coupled to the span of the polygons along a lattice direction, say the z-direction. If the force is negative polygons are squeezed (the compressive regime), while positive forces tend to stretch the polygons along the z-direction (the tensile regime). For sufficiently large positive forces we verify that the Pincus scaling law in the force-extension curve holds. At a fixed number of edges n the knot probability is a decreasing function of the force. For a fixed force the knot probability approaches unity as 1 - exp(-α 0 (f)n + o(n)), where α 0 (f) is positive and a decreasing function of f. We also examine the average of the absolute value of the writhe and we verify the square root growth law (known for f = 0) for all values of f

Alabama ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for dolphins and manatees in Alabama. Vector polygons in this data set represent marine mammal distribution...

Virginia ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for dolphin, seals, whales, and porpoise in Virginia. Vector polygons in this data set represent marine...

Southeast Alaska ESI: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains management area data for National Parks, Wildlife Refuges, and areas designated as Critical Habitat in Southeast Alaska. Vector polygons in...

Hawaii ESI: REPTILES (Reptile and Amphibian Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for threatened/endangered sea turtles in coastal Hawaii. Vector polygons in this data set represent sea...

Maryland ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for seals, whales, porpoise, and dolphin in Maryland. Vector polygons in this data set represent marine...

Louisiana ESI: PARISH (Parish Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains boundaries for parishes in coastal Louisiana. Vector polygons in this data set represent parish management areas. Location-specific type and...

Virginia ESI: HYDRO (Hydrography Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for Virginia. The...

Coding chaotic billiards: I-Non-Compact billiards on a negative curvature manifold

International Nuclear Information System (INIS)

Giannoni, M.J.; Ullmo, D.

1989-03-01

This paper presents a method for coding billiards. The main device is to use a proper surface of section, the bounce mapping, and foliate the reduced phase space into regions associated with a given code. The alphabet is merely the ensemble of the labels of the sides of the billiard. The procedure is applied here to non-compact polygonal billiard defined on a manifold of constant negative curvature, with all vertices at infinity. A simple grammar rule is necessary and sufficient to insure existence and uniqueness of the coding

A fast direct sampling algorithm for equilateral closed polygons

International Nuclear Information System (INIS)

Cantarella, Jason; Duplantier, Bertrand; Shonkwiler, Clayton; Uehara, Erica

2016-01-01

Sampling equilateral closed polygons is of interest in the statistical study of ring polymers. Over the past 30 years, previous authors have proposed a variety of simple Markov chain algorithms (but have not been able to show that they converge to the correct probability distribution) and complicated direct samplers (which require extended-precision arithmetic to evaluate numerically unstable polynomials). We present a simple direct sampler which is fast and numerically stable, and analyze its runtime using a new formula for the volume of equilateral polygon space as a Dirichlet-type integral. (paper)

PpHB22, a member of HD-Zip proteins, activates PpDAM1 to regulate bud dormancy transition in 'Suli' pear (Pyrus pyrifolia White Pear Group).

Science.gov (United States)

Yang, Qinsong; Niu, Qingfeng; Li, Jianzhao; Zheng, Xiaoyan; Ma, Yunjing; Bai, Songling; Teng, Yuanwen

2018-06-01

Homeodomain-leucine zipper (HD-Zip) proteins, which form one of the largest and most diverse families, regulate many biological processes in plants, including differentiation, flowering, vascular development, and stress signaling. Abscisic acid (ABA) has been proved to be one of the key regulators of bud dormancy and to influence several HD-Zip genes expression. However, the role of HD-Zip genes in regulating bud dormancy remains unclear. We identified 47 pear (P. pyrifolia White Pear Group) HD-Zip genes, which were classified into four subfamilies (HD-Zip I-IV). We further revealed that gene expression levels of some HD-Zip members were closely related to ABA concentrations in flower buds during dormancy transition. Exogenous ABA treatment confirmed that PpHB22 and several other HD-Zip genes responded to ABA. Yeast one-hybrid and dual luciferase assay results combining subcellular localization showed that PpHB22 was present in nucleus and directly induced PpDAM1 (dormancy associated MADS-box 1) expression. Thus, PpHB22 is a negative regulator of plant growth associated with the ABA response pathway and functions upstream of PpDAM1. These findings enrich our understanding of the function of HD-Zip genes related to the bud dormancy transition. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Western Alaska ESI: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains management area data for Designated Critical Habitats, Wildlife Refuges, Wild and Scenic Rivers, and State Parks. Vector polygons in this data...

Exploring Nonconvex, Crossed and Degenerate Polygons

Science.gov (United States)

Contreras, Jose N.

2004-01-01

An exploration of nonconvex, crossed, and degenerate polygons (NCCDPs) are described with the help of examples with pedagogical tips and recommendations that are found useful when teaching the mathematical process of extending geometric patterns to NCCDPs. The study concludes that investigating such extensions with interactive geometry software…

of polygons

KAUST Repository

Lu, Yanyan; Lien, Jyh-Ming; Ghosh, Mukulika; Amato, Nancy M.

2012-01-01

Decomposing a shape into visually meaningful parts comes naturally to humans, but recreating this fundamental operation in computers has been shown to be difficult. Similar challenges have puzzled researchers in shape reconstruction for decades. In this paper, we recognize the strong connection between shape reconstruction and shape decomposition at a fundamental level and propose a method called α-decomposition. The α-decomposition generates a space of decompositions parameterized by α, the diameter of a circle convolved with the input polygon. As we vary the value of α, some structural features appear and disappear quickly while others persist. Therefore, by analyzing the persistence of the features, we can determine better decompositions that are more robust to both geometrical and topological noises. © 2012 Elsevier Ltd. All rights reserved.

of polygons

KAUST Repository

Lu, Yanyan

2012-08-01

Decomposing a shape into visually meaningful parts comes naturally to humans, but recreating this fundamental operation in computers has been shown to be difficult. Similar challenges have puzzled researchers in shape reconstruction for decades. In this paper, we recognize the strong connection between shape reconstruction and shape decomposition at a fundamental level and propose a method called α-decomposition. The α-decomposition generates a space of decompositions parameterized by α, the diameter of a circle convolved with the input polygon. As we vary the value of α, some structural features appear and disappear quickly while others persist. Therefore, by analyzing the persistence of the features, we can determine better decompositions that are more robust to both geometrical and topological noises. © 2012 Elsevier Ltd. All rights reserved.

ZIP8 zinc transporter: indispensable role for both multiple-organ organogenesis and hematopoiesis in utero.

Directory of Open Access Journals (Sweden)

Marina Gálvez-Peralta

Full Text Available Previously this laboratory characterized Slc39a8-encoded ZIP8 as a Zn(2+/(HCO(3(-(2 symporter; yet, the overall physiological importance of ZIP8 at the whole-organism level remains unclear. Herein we describe the phenotype of the hypomorphic Slc39a8(neo/neo mouse which has retained the neomycin-resistance gene in intron 3, hence causing significantly decreased ZIP8 mRNA and protein levels in embryo, fetus, placenta, yolk sac, and several tissues of neonates. The Slc39a8(neo allele is associated with diminished zinc and iron uptake in mouse fetal fibroblast and liver-derived cultures; consequently, Slc39a8(neo/neo newborns exhibit diminished zinc and iron levels in several tissues. Slc39a8(neo/neo homozygotes from gestational day(GD-11.5 onward are pale, growth-stunted, and die between GD18.5 and 48 h postnatally. Defects include: severely hypoplastic spleen; hypoplasia of liver, kidney, lung, and lower limbs. Histologically, Slc39a8(neo/neo neonates show decreased numbers of hematopoietic islands in yolk sac and liver. Low hemoglobin, hematocrit, red cell count, serum iron, and total iron-binding capacity confirmed severe anemia. Flow cytometry of fetal liver cells revealed the erythroid series strikingly affected in the hypomorph. Zinc-dependent 5-aminolevulinic acid dehydratase, required for heme synthesis, was not different between Slc39a8(+/+ and Slc39a8(neo/neo offspring. To demonstrate further that the mouse phenotype is due to ZIP8 deficiency, we bred Slc39a8(+/neo with BAC-transgenic BTZIP8-3 line (carrying three extra copies of the Slc39a8 allele; this cross generated viable Slc39a8(neo/neo_BTZIP8-3(+/+ pups showing none of the above-mentioned congenital defects-proving Slc39a8(neo/neo causes the described phenotype. Our study demonstrates that ZIP8-mediated zinc transport plays an unappreciated critical role during in utero and neonatal growth, organ morphogenesis, and hematopoiesis.

Coding chaotic billiards. Pt. 2

International Nuclear Information System (INIS)

Giannoni, M.J.; Ullmo, D.

1993-01-01

A method was proposed earlier to derive exact symbolic dynamics for polygonal billiards defined on a negative curvature surface, whose all vertices lie at infinity. This method is now extended to the case of compact billiards tiling the Poincare disk, using elementary tools such as the bounce mapping. An exact coding is derived also in this case. Furthermore, some results are obtained without using the tiling property. They allow to tackle the more complicated case of non-tiling billiards. (authors). 18 refs., 13 figs

Allegheny County Fatal Accidental Overdoses

Data.gov (United States)

Allegheny County / City of Pittsburgh / Western PA Regional Data Center — Fatal accidental overdose incidents in Allegheny County, denoting age, gender, race, drugs present, zip code of incident and zip code of residence. Zip code of...

Western Alaska ESI: BIOINDEX (Biological Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of the 1:250,000 map boundaries used in the creation of the Environmental Sensitivity Index (ESI)...

Alabama ESI: T_MAMMAL (Terrestrial Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for Alabama and Perdido Key beach mice in Alabama. Vector polygons in this data set represent the rare...

Curvature of random walks and random polygons in confinement

International Nuclear Information System (INIS)

Diao, Y; Ernst, C; Montemayor, A; Ziegler, U

2013-01-01

The purpose of this paper is to study the curvature of equilateral random walks and polygons that are confined in a sphere. Curvature is one of several basic geometric properties that can be used to describe random walks and polygons. We show that confinement affects curvature quite strongly, and in the limit case where the confinement diameter equals the edge length the unconfined expected curvature value doubles from π/2 to π. To study curvature a simple model of an equilateral random walk in spherical confinement in dimensions 2 and 3 is introduced. For this simple model we derive explicit integral expressions for the expected value of the total curvature in both dimensions. These expressions are functions that depend only on the radius R of the confinement sphere. We then show that the values obtained by numeric integration of these expressions agrees with numerical average curvature estimates obtained from simulations of random walks. Finally, we compare the confinement effect on curvature of random walks with random polygons. (paper)

Electronic properties of carbon nanotubes with polygonized cross sections

International Nuclear Information System (INIS)

Charlier, J.; Lambin, P.; Ebbesen, T.

1996-01-01

The electronic properties of carbon nanotubes having polygonized cross sections instead of purely circular ones, such as recently observed using transmission electron microscopy, are investigated with plane-wave ab initio pseudopotential local-density-functional calculations and simple tight-binding models. Strong σ * -π * hybridization effects occur in zigzag nanotubes due to the high curvature located near the edges of the polygonal cross-section prism. These effects, combined with a lowering of symmetry, dramatically affect the electronic properties of the nanotubes. It is found that modified low-lying conduction-band states are introduced either into the bandgap of insulating nanotubes, or below the degenerate states that form the top of the valence band of metallic nanotubes, leading the corresponding nanostructures to be metals, semimetals, or at least very-small-gap semiconductors. The degree of the polygon representing the cross section of the tube, and the sharpness of the edge angles, are found to be major factors in the hybridization effect, and consequently govern the electronic behavior at the Fermi level. copyright 1996 The American Physical Society

Does it really matter that people zip through ads? Testing the effectiveness of simultaneous presentation advertising in an IDTV environment.

Science.gov (United States)

Nam, Yoonjae; Kwon, Kyonghee H; Lee, Sungjoon

2010-04-01

In an IDTV environment, which facilitates self-scheduling, skipping advertisements by zipping is an emerging ad-avoidance behavior. This study explores whether an alternative ad format, called simultaneous presentation advertising (SPA), may overcome the limitations of classical sequential advertising (CSA) in controlling zipping behavior and increasing the effectiveness of ads. The experiment revealed that SPA is more effective than CSA in reducing zipping and increasing recall, but SPA was more intrusive and produced a negative product image. There was no difference regarding cognitive avoidance. This work discusses the implications of these findings in the interactive media environment.

Agency for Toxic Substances and Disease Registry (ATSDR) Hazardous Waste Site Polygon Data, 1996

Data.gov (United States)

National Aeronautics and Space Administration — The Agency for Toxic Substances and Disease Registry (ATSDR) Hazardous Waste Site Polygon Data, 1996 consists of 2042 polygons for selected hazardous waste sites...

Columbia River ESI: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive human-use data for Wildlife Refuges, National Forests, and State Parks for the Columbia River area. Vector polygons in this data set...

HIERARCHICAL REGULARIZATION OF POLYGONS FOR PHOTOGRAMMETRIC POINT CLOUDS OF OBLIQUE IMAGES

Directory of Open Access Journals (Sweden)

L. Xie

2017-05-01

Full Text Available Despite the success of multi-view stereo (MVS reconstruction from massive oblique images in city scale, only point clouds and triangulated meshes are available from existing MVS pipelines, which are topologically defect laden, free of semantical information and hard to edit and manipulate interactively in further applications. On the other hand, 2D polygons and polygonal models are still the industrial standard. However, extraction of the 2D polygons from MVS point clouds is still a non-trivial task, given the fact that the boundaries of the detected planes are zigzagged and regularities, such as parallel and orthogonal, cannot preserve. Aiming to solve these issues, this paper proposes a hierarchical polygon regularization method for the photogrammetric point clouds from existing MVS pipelines, which comprises of local and global levels. After boundary points extraction, e.g. using alpha shapes, the local level is used to consolidate the original points, by refining the orientation and position of the points using linear priors. The points are then grouped into local segments by forward searching. In the global level, regularities are enforced through a labeling process, which encourage the segments share the same label and the same label represents segments are parallel or orthogonal. This is formulated as Markov Random Field and solved efficiently. Preliminary results are made with point clouds from aerial oblique images and compared with two classical regularization methods, which have revealed that the proposed method are more powerful in abstracting a single building and is promising for further 3D polygonal model reconstruction and GIS applications.

Realistic roofs over a rectilinear polygon

KAUST Repository

Ahn, Heekap; Bae, Sangwon; Knauer, Christian; Lee, Mira; Shin, Chansu; Vigneron, Antoine E.

2013-01-01

Given a simple rectilinear polygon P in the xy-plane, a roof over P is a terrain over P whose faces are supported by planes through edges of P that make a dihedral angle π/4 with the xy-plane. According to this definition, some roofs may have faces

Potential novel bZIP-like gene for resistance to Erysiphe necator ...

African Journals Online (AJOL)

AJL

2012-06-19

Jun 19, 2012 ... In this study, a novel bZIP-like gene was isolated from Chinese wild Vitis ... Results reveal that it was in lower lever in flower than in leaf, stem, tendril and fruit. .... First-strand cDNA was synthesized from 1 µg of DNase treated.

DNA Methylation Influences Chlorogenic Acid Biosynthesis in Lonicera japonica by Mediating LjbZIP8 to Regulate Phenylalanine Ammonia-Lyase 2 Expression

Directory of Open Access Journals (Sweden)

Liangping Zha

2017-07-01

Full Text Available The content of active compounds differ in buds and flowers of Lonicera japonica (FLJ and L. japonica var. chinensis (rFLJ. Chlorogenic acid (CGAs were major active compounds of L. japonica and regarded as measurements for quality evaluation. However, little is known concerning the formation of active compounds at the molecular level. We quantified the major CGAs in FLJ and rFLJ, and found the concentrations of CGAs were higher in the buds of rFLJ than those of FLJ. Further analysis of CpG methylation of CGAs biosynthesis genes showed differences between FLJ and rFLJ in the 5′-UTR of phenylalanine ammonia-lyase 2 (PAL2. We identified 11 LjbZIP proteins and 24 rLjbZIP proteins with conserved basic leucine zipper domains, subcellular localization, and electrophoretic mobility shift assay showed that the transcription factor LjbZIP8 is a nuclear-localized protein that specifically binds to the G-box element of the LjPAL2 5′-UTR. Additionally, a transactivation assay and LjbZIP8 overexpression in transgenic tobacco indicated that LjbZIP8 could function as a repressor of transcription. Finally, treatment with 5-azacytidine decreased the transcription level of LjPAL2 and CGAs content in FLJ leaves. These results raise the possibility that DNA methylation might influence the recruitment of LjbZIP8, regulating PAL2 expression level and CGAs content in L. japonica.

Engineering of a novel zipFv using leucine zipper motif against rabies virus glycoprotein G with improved protection potency in vivo.

Science.gov (United States)

Xi, Hualong; Zhang, Kaixin; Yin, Yanchun; Gu, Tiejun; Sun, Qing; Li, Zhuang; Cheng, Yue; Jiang, Chunlai; Kong, Wei; Wu, Yongge

2017-06-01

Rabies is an acute zoonotic infectious disease with a high fatality rate but is preventable with vaccination and rabies immunoglobulin (RIG). The single-chain Fv fragment (scFv), a small engineered antigen-binding protein derived from antibody variable heavy (V H ) and light (V L ) chains connected by a peptide linker, can potentially be used to replace RIG. Here, we produced two peptides V H -JUN-HIS and V L -FOS-HA separately in Escherichia coli and assembled them to form zipFv successfully in vitro. The new zipFv utilizes FOS and JUN leucine zippers to form an antibody structure similar to the IgG counterpart with two free N-terminal ends of V H and V L . The zipFv protein showed notable improvement in binding ability and affinity over its corresponding scFv. The zipFv also demonstrated greater stability in serum and the same protective rate as RIG against challenge with a standard rabies virus (CVS-24) in mice. Our results indicated zipFv as a novel and efficient antibody form with enhanced neutralizing potency. Copyright © 2017. Published by Elsevier B.V.

Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor

KAUST Repository

Nagashima, Yukihiro

2011-07-01

IRE1 plays an essential role in the endoplasmic reticulum (ER) stress response in yeast and mammals. We found that a double mutant of Arabidopsis IRE1A and IRE1B (ire1a/ire1b) is more sensitive to the ER stress inducer tunicamycin than the wild-type. Transcriptome analysis revealed that genes whose induction was reduced in ire1a/ire1b largely overlapped those in the bzip60 mutant. We observed that the active form of bZIP60 protein detected in the wild-type was missing in ire1a/ire1b. We further demonstrated that bZIP60 mRNA is spliced by ER stress, removing 23 ribonucleotides and therefore causing a frameshift that replaces the C-terminal region of bZIP60 including the transmembrane domain (TMD) with a shorter region without a TMD. This splicing was detected in ire1a and ire1b single mutants, but not in the ire1a/ire1b double mutant. We conclude that IRE1A and IRE1B catalyse unconventional splicing of bZIP60 mRNA to produce the active transcription factor.

Generation of oculomotor images during tasks requiring visual recognition of polygons.

Science.gov (United States)

Olivier, G; de Mendoza, J L

2001-06-01

This paper concerns the contribution of mentally simulated ocular exploration to generation of a visual mental image. In Exp. 1, repeated exploration of the outlines of an irregular decagon allowed an incidental learning of the shape. Analyses showed subjects memorized their ocular movements rather than the polygon. In Exp. 2, exploration of a reversible figure such as a Necker cube varied in opposite directions. Then, both perspective possibilities are presented. The perspective the subjects recognized depended on the way they explored the ambiguous figure. In both experiments, during recognition the subjects recalled a visual mental image of the polygon they compared with the different polygons proposed for recognition. To interpret the data, hypotheses concerning common processes underlying both motor intention of ocular movements and generation of a visual image are suggested.

Infinite genus surfaces and irrational polygonal billiards

OpenAIRE

Valdez, Ferrán

2009-01-01

We prove that the natural invariant surface associated with the billiard game on an irrational polygonal table is homeomorphic to the Loch Ness monster, that is, the only orientable infinite genus topological real surface with exactly one end.

Topology optimization of adaptive fluid-actuated cellular structures with arbitrary polygonal motor cells

International Nuclear Information System (INIS)

Lv, Jun; Tang, Liang; Li, Wenbo; Liu, Lei; Zhang, Hongwu

2016-01-01

This paper mainly focuses on the fast and efficient design method for plant bioinspired fluidic cellular materials and structures composed of polygonal motor cells. Here we developed a novel structural optimization method with arbitrary polygonal coarse-grid elements based on multiscale finite element frameworks. The fluidic cellular structures are meshed with irregular polygonal coarse-grid elements according to their natural size and the shape of the imbedded motor cells. The multiscale base functions of solid displacement and hydraulic pressure are then constructed to bring the small-scale information of the irregular motor cells to the large-scale simulations on the polygonal coarse-grid elements. On this basis, a new topology optimization method based on the resulting polygonal coarse-grid elements is proposed to determine the optimal distributions or number of motor cells in the smart cellular structures. Three types of optimization problems are solved according to the usages of the fluidic cellular structures. Firstly, the proposed optimization method is utilized to minimize the system compliance of the load-bearing fluidic cellular structures. Second, the method is further extended to design biomimetic compliant actuators of the fluidic cellular materials due to the fact that non-uniform volume expansions of fluid in the cells can induce elastic action. Third, the optimization problem focuses on the weight minimization of the cellular structure under the constraints for the compliance of the whole system. Several representative examples are investigated to validate the effectiveness of the proposed polygon-based topology optimization method of the smart materials. (paper)

Simulating 3D deformation using connected polygons

Science.gov (United States)

Tarigan, J. T.; Jaya, I.; Hardi, S. M.; Zamzami, E. M.

2018-03-01

In modern 3D application, interaction between user and the virtual world is one of an important factor to increase the realism. This interaction can be visualized in many forms; one of them is object deformation. There are many ways to simulate object deformation in virtual 3D world; each comes with different level of realism and performance. Our objective is to present a new method to simulate object deformation by using a graph-connected polygon. In this solution, each object contains multiple level of polygons in different level of volume. The proposed solution focusses on performance rather while maintaining the acceptable level of realism. In this paper, we present the design and implementation of our solution and show that this solution is usable in performance sensitive 3D application such as games and virtual reality.

A QUALITY ASSESSMENT METHOD FOR 3D ROAD POLYGON OBJECTS

Directory of Open Access Journals (Sweden)

L. Gao

2015-08-01

Full Text Available With the development of the economy, the fast and accurate extraction of the city road is significant for GIS data collection and update, remote sensing images interpretation, mapping and spatial database updating etc. 3D GIS has attracted more and more attentions from academics, industries and governments with the increase of requirements for interoperability and integration of different sources of data. The quality of 3D geographic objects is very important for spatial analysis and decision-making. This paper presents a method for the quality assessment of the 3D road polygon objects which is created by integrating 2D Road Polygon data with LiDAR point cloud and other height information such as Spot Height data in Hong Kong Island. The quality of the created 3D road polygon data set is evaluated by the vertical accuracy, geometric and attribute accuracy, connectivity error, undulation error and completeness error and the final results are presented.

Effects of Rashba spin–orbit coupling and a magnetic field on a polygonal quantum ring

International Nuclear Information System (INIS)

Tang, Han-Zhao; Zhai, Li-Xue; Shen, Man; Liu, Jian-Jun

2014-01-01

Using standard quantum network method, we analytically investigate the effect of Rashba spin–orbit coupling (RSOC) and a magnetic field on the spin transport properties of a polygonal quantum ring. Using Landauer–Büttiker formula, we have found that the polarization direction and phase of transmitted electrons can be controlled by both the magnetic field and RSOC. A device to generate a spin-polarized conductance in a polygon with an arbitrary number of sides is discussed. This device would permit precise control of spin and selectively provide spin filtering for either spin up or spin down simply by interchanging the source and drain. - Highlights: • Spin conductance of polygon with RSOC and magnetic field is calculated analytically. • We show how the RSOC and a magnetic field control the phase of electron in polygon. • The AB oscillation and shape-dependent conductance are studied in a polygonal ring. • Our model can provide spin filtering simply by interchanging the source and drain

Polygonal approximation and scale-space analysis of closed digital curves

CERN Document Server

Ray, Kumar S

2013-01-01

This book covers the most important topics in the area of pattern recognition, object recognition, computer vision, robot vision, medical computing, computational geometry, and bioinformatics systems. Students and researchers will find a comprehensive treatment of polygonal approximation and its real life applications. The book not only explains the theoretical aspects but also presents applications with detailed design parameters. The systematic development of the concept of polygonal approximation of digital curves and its scale-space analysis are useful and attractive to scholars in many fi

Origin of the Polygons and Underground Structures in Western Utopia Planitia on Mars

Science.gov (United States)

Yoshikawa, K.

2002-01-01

The area of lower albedo (Hvm) has a higher density of polygonal patterns. These patterns potentially suggest that 1) the polygonal pattern is caused primarily by ground heaving and collapsing, 2) lower albedo materials had higher tensile strength. Additional information is contained in the original extended abstract.

Columbia River ESI: NWI (National Wetlands Inventory - Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the wetlands of Columbia River classified according to the Environmental Sensitivity Index (ESI) classification...

The linking number and the writhe of uniform random walks and polygons in confined spaces

International Nuclear Information System (INIS)

Panagiotou, E; Lambropoulou, S; Millett, K C

2010-01-01

Random walks and polygons are used to model polymers. In this paper we consider the extension of the writhe, self-linking number and linking number to open chains. We then study the average writhe, self-linking and linking number of random walks and polygons over the space of configurations as a function of their length. We show that the mean squared linking number, the mean squared writhe and the mean squared self-linking number of oriented uniform random walks or polygons of length n, in a convex confined space, are of the form O(n 2 ). Moreover, for a fixed simple closed curve in a convex confined space, we prove that the mean absolute value of the linking number between this curve and a uniform random walk or polygon of n edges is of the form O(√n). Our numerical studies confirm those results. They also indicate that the mean absolute linking number between any two oriented uniform random walks or polygons, of n edges each, is of the form O(n). Equilateral random walks and polygons are used to model polymers in θ-conditions. We use numerical simulations to investigate how the self-linking and linking number of equilateral random walks scale with their length.

Non-convex polygons clustering algorithm

Directory of Open Access Journals (Sweden)

Kruglikov Alexey

2016-01-01

Full Text Available A clustering algorithm is proposed, to be used as a preliminary step in motion planning. It is tightly coupled to the applied problem statement, i.e. uses parameters meaningful only with respect to it. Use of geometrical properties for polygons clustering allows for a better calculation time as opposed to general-purpose algorithms. A special form of map optimized for quick motion planning is constructed as a result.

Fat polygonal partitions with applications to visualization and embeddings

Directory of Open Access Journals (Sweden)

Mark de Berg

2013-12-01

Full Text Available Let T be a rooted and weighted tree, where the weight of any node is equal to the sum of the weights of its children. The popular Treemap algorithm visualizes such a tree as a hierarchical partition of a square into rectangles, where the area of the rectangle corresponding to any node in T is equal to the weight of that node. The aspect ratio of the rectangles in such a rectangular partition necessarily depends on the weights and can become arbitrarily high.We introduce a new hierarchical partition scheme, called a polygonal partition, which uses convex polygons rather than just rectangles. We present two methods for constructing polygonal partitions, both having guarantees on the worst-case aspect ratio of the constructed polygons; in particular, both methods guarantee a bound on the aspect ratio that is independent of the weights of the nodes.We also consider rectangular partitions with slack, where the areas of the rectangles may differ slightly from the weights of the corresponding nodes. We show that this makes it possible to obtain partitions with constant aspect ratio. This result generalizes to hyper-rectangular partitions in ℝd. We use these partitions with slack for embedding ultrametrics into d-dimensional Euclidean space:  we give a polylog(Δ-approximation algorithm for embedding n-point ultrametrics into ℝd with minimum distortion, where Δ denotes the spread of the metric. The previously best-known approximation ratio for this problem was polynomial in n. This is the first algorithm for embedding a non-trivial family of weighted-graph metrics into a space of constant dimension that achieves polylogarithmic approximation ratio.

Model of Random Polygon Particles for Concrete and Mesh Automatic Subdivision

Institute of Scientific and Technical Information of China (English)

无

2001-01-01

In order to study the constitutive behavior of concrete in mesoscopic level, a new method is proposed in this paper. This method uses random polygon particles to simulate full grading broken aggregates of concrete. Based on computational geometry, we carry out the automatic generation of the triangle finite element mesh for the model of random polygon particles of concrete. The finite element mesh generated in this paper is also applicable to many other numerical methods.

Fast voxel and polygon ray-tracing algorithms in intensity modulated radiation therapy treatment planning

International Nuclear Information System (INIS)

Fox, Christopher; Romeijn, H. Edwin; Dempsey, James F.

2006-01-01

We present work on combining three algorithms to improve ray-tracing efficiency in radiation therapy dose computation. The three algorithms include: An improved point-in-polygon algorithm, incremental voxel ray tracing algorithm, and stereographic projection of beamlets for voxel truncation. The point-in-polygon and incremental voxel ray-tracing algorithms have been used in computer graphics and nuclear medicine applications while the stereographic projection algorithm was developed by our group. These algorithms demonstrate significant improvements over the current standard algorithms in peer reviewed literature, i.e., the polygon and voxel ray-tracing algorithms of Siddon for voxel classification (point-in-polygon testing) and dose computation, respectively, and radius testing for voxel truncation. The presented polygon ray-tracing technique was tested on 10 intensity modulated radiation therapy (IMRT) treatment planning cases that required the classification of between 0.58 and 2.0 million voxels on a 2.5 mm isotropic dose grid into 1-4 targets and 5-14 structures represented as extruded polygons (a.k.a. Siddon prisms). Incremental voxel ray tracing and voxel truncation employing virtual stereographic projection was tested on the same IMRT treatment planning cases where voxel dose was required for 230-2400 beamlets using a finite-size pencil-beam algorithm. Between a 100 and 360 fold cpu time improvement over Siddon's method was observed for the polygon ray-tracing algorithm to perform classification of voxels for target and structure membership. Between a 2.6 and 3.1 fold reduction in cpu time over current algorithms was found for the implementation of incremental ray tracing. Additionally, voxel truncation via stereographic projection was observed to be 11-25 times faster than the radial-testing beamlet extent approach and was further improved 1.7-2.0 fold through point-classification using the method of translation over the cross product technique

A study on the nuclear computer code maintenance and management system

International Nuclear Information System (INIS)

Kim, Yeon Seung; Huh, Young Hwan; Lee, Jong Bok; Choi, Young Gil; Suh, Soong Hyok; Kang, Byong Heon; Kim, Hee Kyung; Kim, Ko Ryeo; Park, Soo Jin

1990-12-01

According to current software development and quality assurance trends. It is necessary to develop computer code management system for nuclear programs. For this reason, the project started in 1987. Main objectives of the project are to establish a nuclear computer code management system, to secure software reliability, and to develop nuclear computer code packages. Contents of performing the project in this year were to operate and maintain computer code information system of KAERI computer codes, to develop application tool, AUTO-i, for solving the 1st and 2nd moments of inertia on polygon or circle, and to research nuclear computer code conversion between different machines. For better supporting the nuclear code availability and reliability, assistance from users who are using codes is required. Lastly, for easy reference about the codes information, we presented list of code names and information on the codes which were introduced or developed during this year. (Author)

A Novel Polygonal Finite Element Method: Virtual Node Method

Science.gov (United States)

Tang, X. H.; Zheng, C.; Zhang, J. H.

2010-05-01

Polygonal finite element method (PFEM), which can construct shape functions on polygonal elements, provides greater flexibility in mesh generation. However, the non-polynomial form of traditional PFEM, such as Wachspress method and Mean Value method, leads to inexact numerical integration. Since the integration technique for non-polynomial functions is immature. To overcome this shortcoming, a great number of integration points have to be used to obtain sufficiently exact results, which increases computational cost. In this paper, a novel polygonal finite element method is proposed and called as virtual node method (VNM). The features of present method can be list as: (1) It is a PFEM with polynomial form. Thereby, Hammer integral and Gauss integral can be naturally used to obtain exact numerical integration; (2) Shape functions of VNM satisfy all the requirements of finite element method. To test the performance of VNM, intensive numerical tests are carried out. It found that, in standard patch test, VNM can achieve significantly better results than Wachspress method and Mean Value method. Moreover, it is observed that VNM can achieve better results than triangular 3-node elements in the accuracy test.

A model of anelastic relaxation associated with polygonization boundary

International Nuclear Information System (INIS)

Yan, S.C.

1990-01-01

A model of anelastic relaxation associated with polygonization boundary is proposed in order to explain internal friction peaks and other experimental phenomena observed recently. The model, which is referred to as vacancy-thermal jog model, shows that under conditions of high temperature and low applied stress with lower frequencies of vibration, thermal jog pairs are generated on dislocation segments of the boundaries. These jogs are in saturation with vacancies in the vicinity of them, and the vacancy current due to the concentration gradient of vacancy drifts among the boundaries. As a result, a diffusional creep is produced and a part of energy is dissipated. For vacancy drift, it is required that the thermal jogs emit (absorb) vacancies, which brings climbing bow of segments into operation, and another part of energy is dissipated so that there are two parts of energy dissipated in the strain process connected with polygonization boundary. Based on this point of view, the mathematical expressions of internal friction and modulus defect associated with polygonization boundary were subsequently derived and found to be in satisfactory agreement with experiments. (author). 13 refs, 6 figs

Development of polygonal surface version of ICRP reference phantoms: Preliminary study for posture change

International Nuclear Information System (INIS)

Nguyen, Tat Thang; Yeom, Yeon Soo; Han, Min Cheol; Kim, Chan Hyeong

2013-01-01

Even though International Commission on Radiological Protection (ICRP) officially adopted a set of adult male and female voxel phantoms as the ICRP reference phantoms, there are several critical limitations due to the nature of voxel geometry and their low voxel resolutions. In order to overcome these limitations of the ICRP phantoms, we are currently developing polygonal surface version of ICRP reference phantoms by directly converting the ICRP voxel phantoms to polygonal surface geometries. Among the many advantages of the ICRP polygonal surface phantom, especially, it is flexible and deformable. In principle, it is, therefore, possible to make the posture-changed ICRP phantoms which can provide more accurate dose values for exposure situations strongly relevant to worker's postures. As a preliminary study for developing the posture-changed ICRP phantoms, in this work we changed the posture of the preliminary version of ICRP male polygon-surface phantom constructed in the previous study. Organ doses were then compared between original and posture-changed phantoms. In the present study, we successfully changed a posture of the preliminary version of ICRP male polygon-surface phantom to the walking posture. From this results, it was explicitly shown that the polygon-surface version of the ICRP phantoms can be sufficiently modified to be various postures with the posture-changing method used in this study. In addition, it was demonstrated that phantom's posture must be considered in certain exposure situations, which can differ dose values from the conventional standing-posture phantom

Location memory for dots in polygons versus cities in regions: evaluating the category adjustment model.

Science.gov (United States)

Friedman, Alinda; Montello, Daniel R; Burte, Heather

2012-09-01

We conducted 3 experiments to examine the category adjustment model (Huttenlocher, Hedges, & Duncan, 1991) in circumstances in which the category boundaries were irregular schematized polygons made from outlines of maps. For the first time, accuracy was tested when only perceptual and/or existing long-term memory information about identical locations was cued. Participants from Alberta, Canada and California received 1 of 3 conditions: dots-only, in which a dot appeared within the polygon, and after a 4-s dynamic mask the empty polygon appeared and the participant indicated where the dot had been; dots-and-names, in which participants were told that the first polygon represented Alberta/California and that each dot was in the correct location for the city whose name appeared outside the polygon; and names-only, in which there was no first polygon, and participants clicked on the city locations from extant memory alone. Location recall in the dots-only and dots-and-names conditions did not differ from each other and had small but significant directional errors that pointed away from the centroids of the polygons. In contrast, the names-only condition had large and significant directional errors that pointed toward the centroids. Experiments 2 and 3 eliminated the distribution of stimuli and overall screen position as causal factors. The data suggest that in the "classic" category adjustment paradigm, it is difficult to determine a priori when Bayesian cue combination is applicable, making Bayesian analysis less useful as a theoretical approach to location estimation. PsycINFO Database Record (c) 2012 APA, all rights reserved.

On reconstruction of an unknown polygonal cavity in a linearized elasticity with one measurement

International Nuclear Information System (INIS)

Ikehata, M; Itou, H

2011-01-01

In this paper we consider a reconstruction problem of an unknown polygonal cavity in a linearized elastic body. For this problem, an extraction formula of the convex hull of the unknown polygonal cavity is established by means of the enclosure method introduced by Ikehata. The advantages of our method are that it needs only a single set of boundary data and we do not require any a priori assumptions for the unknown polygonal cavity and any constraints on boundary data. The theoretical formula may have possibility of application in nondestructive evaluation.

Coastal Resources Atlas: Long Island: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, anadromous, and freshwater fish species for Long Island, New York. Vector polygons...

Bristol Bay, Alaska Subarea ESI: INDEX (Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of all the hardcopy cartographic products produced as part of the Environmental Sensitivity Index...

Columbia River ESI: HYDRO (Hydrography Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for Columbia...

Spectral segmentation of polygonized images with normalized cuts

Energy Technology Data Exchange (ETDEWEB)

Matsekh, Anna [Los Alamos National Laboratory; Skurikhin, Alexei [Los Alamos National Laboratory; Rosten, Edward [UNIV OF CAMBRIDGE

2009-01-01

We analyze numerical behavior of the eigenvectors corresponding to the lowest eigenvalues of the generalized graph Laplacians arising in the Normalized Cuts formulations of the image segmentation problem on coarse polygonal grids.

Polygons in Martian Frost

Science.gov (United States)

2003-01-01

MGS MOC Release No. MOC2-428, 21 July 2003This June 2003 Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a polygonal pattern developed in seasonal carbon dioxide frost in the martian southern hemisphere. The frost accumulated during the recent southern winter; it is now spring, and the carbon dioxide frost is subliming away. This image is located near 80.4oS, 200.2oW; it is illuminated by sunlight from the upper left, and covers an area 3 km (1.9 mi) across.

Polygon construction to investigate melting in two-dimensional strongly coupled dusty plasma

International Nuclear Information System (INIS)

Ruhunusiri, W. D. Suranga; Goree, J.; Feng Yan; Liu Bin

2011-01-01

The polygon construction method of Glaser and Clark is used to characterize melting and crystallization in a two-dimensional (2D) strongly coupled dusty plasma. Using particle positions measured by video microscopy, bonds are identified by triangulation, and unusually long bonds are deleted. The resulting polygons have three or more sides. Geometrical defects, which are polygons with more than three sides, are found to proliferate during melting. Pentagons are found in liquids, where they tend to cluster with other pentagons. Quadrilaterals are a less severe defect, so that disorder can be characterized by the ratio of quadrilaterals to pentagons. This ratio is found to be less in a liquid than in a solid or a superheated solid. Another measure of disorder is the abundance of different kinds of vertices, according to the type of polygons that adjoin there. Unexpectedly, spikes are observed in the abundance of certain vertex types during rapid temperature changes. Hysteresis, revealed by a plot of a disorder parameter vs temperature, is examined to study sudden heating. The hysteresis diagram also reveals features suggesting a possibility of latent heat in the melting and rapid cooling processes.

Southeast Alaska ESI: T_MAMMAL (Terrestrial Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for brown bears in Southeast Alaska. Vector polygons in this data set represent locations of bear concentrations....

Western Alaska ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for seals, whales, dolphins, walruses, and Steller sea lions in Western Alaska. Vector polygons in this...

American Samoa ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for whales and dolphins in American Samoa. Vector polygons in this data set represent marine mammal...

Coastal Resources Atlas: Long Island: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for coastal, estuarine, and marine invertebrate species for Long Island, New York. Vector polygons in this...

American Samoa ESI: REPTILES (Reptile and Amphibian Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for sea turtles in American Samoa. Vector polygons in this data set represent sea turtle nesting and...

Columbia River ESI: REPTILES (Reptile and Amphibian Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for western pond turtles and western painted turtles in Columbia River. Vector polygons in this data set...

Columbia River ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for Steller sea lions, harbor seals, and California sea lions in Columbia River. Vector polygons in this...

North Slope, Alaska ESI: BIOINDEX (Biological Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the quad boundaries of the 1:250,000 USGS topographic quadrangles. These boundaries represent the extent of the...

Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

Science.gov (United States)

The homeodomain leucine zipper (HD-Zip) transcription factor family is one of the largest plant specific superfamilies, and includes genes with roles in modulation of plant growth and response to environmental stresses. Many HD-Zip genes are well characterized in Arabidopsis (Arabidopsis thaliana), ...

Quasi regular polygons and their duals with Coxeter symmetries Dn represented by complex numbers

International Nuclear Information System (INIS)

Koca, M; Koca, N O

2011-01-01

This paper deals with tiling of the plane by quasi regular polygons and their duals. The problem is motivated from the fact that the graphene, infinite number of carbon molecules forming a honeycomb lattice, may have states with two bond lengths and equal bond angles or one bond length and different bond angles. We prove that the Euclidean plane can be tiled with two tiles consisting of quasi regular hexagons with two different lengths (isogonal hexagons) and regular hexagons. The dual lattice is constructed with the isotoxal hexagons (equal edges but two different interior angles) and regular hexagons. We also give similar tilings of the plane with the quasi regular polygons along with the regular polygons possessing the Coxeter symmetries D n , n=2,3,4,5. The group elements as well as the vertices of the polygons are represented by the complex numbers.

Exact moduli space metrics for hyperbolic vortex polygons

International Nuclear Information System (INIS)

Krusch, S.; Speight, J. M.

2010-01-01

Exact metrics on some totally geodesic submanifolds of the moduli space of static hyperbolic N-vortices are derived. These submanifolds, denoted as Σ n,m , are spaces of C n -invariant vortex configurations with n single vortices at the vertices of a regular polygon and m=N-n coincident vortices at the polygon's center. The geometric properties of Σ n,m are investigated, and it is found that Σ n,n-1 is isometric to the hyperbolic plane of curvature -(3πn) -1 . The geodesic flow on Σ n,m and a geometrically natural variant of geodesic flow recently proposed by Collie and Tong ['The dynamics of Chern-Simons vortices', Phys. Rev. D Part. Fields Gravit. Cosmol. 78, 065013 (2008);e-print arXiv:hep-th/0805.0602] are analyzed in detail.

Knotting probabilities after a local strand passage in unknotted self-avoiding polygons

International Nuclear Information System (INIS)

Szafron, M L; Soteros, C E

2011-01-01

We investigate, both theoretically and numerically, the knotting probabilities after a local strand passage is performed in an unknotted self-avoiding polygon (SAP) on the simple cubic lattice. In the polygons studied, it is assumed that two polygon segments have already been brought close together for the purpose of performing a strand passage. This restricts the polygons considered to those that contain a specific pattern called Θ at a fixed location; an unknotted polygon containing Θ is called a Θ-SAP. It is proved that the number of n-edge Θ-SAPs grows exponentially (with n) at the same rate as the total number of n-edge unknotted SAPs (those with no prespecified strand passage structure). Furthermore, it is proved that the same holds for subsets of n-edge Θ-SAPs that yield a specific after-strand-passage knot-type. Thus, the probability of a given after-strand-passage knot-type does not grow (or decay) exponentially with n. Instead, it is conjectured that these after-strand-passage knot probabilities approach, as n goes to infinity, knot-type dependent amplitude ratios lying strictly between 0 and 1. This conjecture is supported by numerical evidence from Monte Carlo data generated using a composite (aka multiple) Markov chain Monte Carlo BFACF algorithm developed to study Θ-SAPs. A new maximum likelihood method is used to estimate the critical exponents relevant to this conjecture. We also obtain strong numerical evidence that the after-strand-passage knotting probability depends on the local structure around the strand-passage site. If the local structure and the crossing sign at the strand-passage site are considered, then we observe that the more 'compact' the local structure, the less likely the after-strand-passage polygon is to be knotted. This trend for compactness versus knotting probability is consistent with results obtained for other strand-passage models; however, we are the first to note the influence of the crossing-sign information. We

Ice-Wedge Polygon Formation Impacts Permafrost Carbon Storage and Vulnerability to Top-Down Thaw in Arctic Coastal Plain Soils

Science.gov (United States)

Jastrow, J. D.; Matamala, R.; Ping, C. L.; Vugteveen, T. W.; Lederhouse, J. S.; Michaelson, G. J.; Mishra, U.

2017-12-01

Ice-wedge polygons are ubiquitous, patterned ground features throughout Arctic coastal plains and river deltas. The progressive expansion of ice wedges influences polygon development and strongly affects cryoturbation and soil formation. Thus, we hypothesized that polygon type impacts the distribution and composition of soil organic carbon (C) stocks across the landscape and that such information can improve estimates of permafrost C stocks vulnerable to active layer thickening and increased decomposition due to climatic change. We quantified the distribution of soil C across entire polygon profiles (2-m depth) for three developmental types - flat-centered (FCP), low-centered (LCP), and high-centered (HCP) polygons (3 replicates of each) - formed on glaciomarine sediments within and near the Barrow Environmental Observatory at the northern tip of Alaska. Active layer thickness averaged 45 cm and did not vary among polygon types. Similarly, active layer C stocks were unaffected by polygon type, but permafrost C stocks increased from FCPs to LCPs to HCPs despite greater ice volumes in HCPs. These differences were due to a greater presence of organic horizons in the upper permafrost of LCPs and, especially, HCPs. On average, C stocks in polygon interiors were double those of troughs, on a square meter basis. However, HCPs were physically smaller than LCPs and FCPs, which affected estimates of C stocks at the landscape scale. Accounting for the number of polygons per unit area and the proportional distribution of troughs versus interiors, we estimated permafrost C stocks (2-m depth) increased from 259 Mg C ha-1 in FCPs to 366 Mg C ha-1 in HCPs. Active layer C stocks did not differ among polygon types and averaged 328 Mg C ha-1. We used our detailed polygon profiles to investigate the impact of active layer deepening as projected by Earth system models under future climate scenarios. Because HCPs have a greater proportion of upper permafrost C stocks in organic horizons

The polygonal model: A simple representation of biomolecules as a tool for teaching metabolism.

Science.gov (United States)

Bonafe, Carlos Francisco Sampaio; Bispo, Jose Ailton Conceição; de Jesus, Marcelo Bispo

2018-01-01

Metabolism involves numerous reactions and organic compounds that the student must master to understand adequately the processes involved. Part of biochemical learning should include some knowledge of the structure of biomolecules, although the acquisition of such knowledge can be time-consuming and may require significant effort from the student. In this report, we describe the "polygonal model" as a new means of graphically representing biomolecules. This model is based on the use of geometric figures such as open triangles, squares, and circles to represent hydroxyl, carbonyl, and carboxyl groups, respectively. The usefulness of the polygonal model was assessed by undergraduate students in a classroom activity that consisted of "transforming" molecules from Fischer models to polygonal models and vice and versa. The survey was applied to 135 undergraduate Biology and Nursing students. Students found the model easy to use and we noted that it allowed identification of students' misconceptions in basic concepts of organic chemistry, such as in stereochemistry and organic groups that could then be corrected. The students considered the polygonal model easier and faster for representing molecules than Fischer representations, without loss of information. These findings indicate that the polygonal model can facilitate the teaching of metabolism when the structures of biomolecules are discussed. Overall, the polygonal model promoted contact with chemical structures, e.g. through drawing activities, and encouraged student-student dialog, thereby facilitating biochemical learning. © 2017 by The International Union of Biochemistry and Molecular Biology, 46(1):66-75, 2018. © 2017 The International Union of Biochemistry and Molecular Biology.

Invariant polygons in systems with grazing-sliding.

Science.gov (United States)

Szalai, R; Osinga, H M

2008-06-01

The paper investigates generic three-dimensional nonsmooth systems with a periodic orbit near grazing-sliding. We assume that the periodic orbit is unstable with complex multipliers so that two dominant frequencies are present in the system. Because grazing-sliding induces a dimension loss and the instability drives every trajectory into sliding, the system has an attractor that consists of forward sliding orbits. We analyze this attractor in a suitably chosen Poincare section using a three-parameter generalized map that can be viewed as a normal form. We show that in this normal form the attractor must be contained in a finite number of lines that intersect in the vertices of a polygon. However the attractor is typically larger than the associated polygon. We classify the number of lines involved in forming the attractor as a function of the parameters. Furthermore, for fixed values of parameters we investigate the one-dimensional dynamics on the attractor.

United States National Grid for New Mexico, UTM 12, (1000m X 1000m polygons )

Data.gov (United States)

Earth Data Analysis Center, University of New Mexico — This is a polygon feature data layer of United States National Grid (1000m x 1000m polygons ) constructed by the Center for Interdisciplinary Geospatial Information...

United States National Grid for New Mexico, UTM 13, (1000m X 1000m polygons )

Data.gov (United States)

Earth Data Analysis Center, University of New Mexico — This is a polygon feature data layer of United States National Grid (1000m x 1000m polygons ) constructed by the Center for Interdisciplinary Geospatial Information...

Logarithmic solution to the line-polygon intersection problem. 127

International Nuclear Information System (INIS)

Siddon, R.L.; Barth, N.H.

1987-01-01

Algorithmic solution for a special case of the line - polygon intersection problem has been developed. The special case involves repeated solution to the problem where one point on the line is held fixed and the other allowed to vary. In addition, the fixed point on the line must lie outside the rectangle defined by the extrema of the polygon and varying point. In radiotherapy applications, the fixed point corresponds to the source of radiation, whereas the varying points refer to the grid of multiple calculation points. For smooth contours of 100-200 vertices, it is found that the new algorithm results in a CPU savings of approximately a factor of 3-5. 3 refs.; 4 figs

Analysis of the Misconceptions of 7th Grade Students on Polygons and Specific Quadrilaterals

Science.gov (United States)

Ozkan, Mustafa; Bal, Ayten Pinar

2017-01-01

Purpose: This study will find out student misconceptions about geometrical figures, particularly polygons and quadrilaterals. Thus, it will offer insights into teaching these concepts. The objective of this study, the question of "What are the misconceptions of seventh grade students on polygons and quadrilaterals?" constitutes the…

Sub-wavelength resonances in polygonal metamaterial cylinders

DEFF Research Database (Denmark)

Arslanagic, Samel; Breinbjerg, Olav

2008-01-01

It has been shown that the sub-wavelength resonances of circular MTM cylinders also occur for polygonal MTM cylinders. This is the case for lossless and non-dispersive cylinders as well as lossy and dispersive cylinders. The sub-wavelength resonances are thus not limited to structures of canonical...

Generating realistic roofs over a rectilinear polygon

KAUST Repository

Ahn, Heekap; Bae, Sangwon; Knauer, Christian; Lee, Mira; Shin, Chansu; Vigneron, Antoine E.

2011-01-01

Given a simple rectilinear polygon P in the xy-plane, a roof over P is a terrain over P whose faces are supported by planes through edges of P that make a dihedral angle π/4 with the xy-plane. In this paper, we introduce realistic roofs by imposing

3D Polygon Mesh Compression with Multi Layer Feed Forward Neural Networks

Directory of Open Access Journals (Sweden)

Emmanouil Piperakis

2003-06-01

Full Text Available In this paper, an experiment is conducted which proves that multi layer feed forward neural networks are capable of compressing 3D polygon meshes. Our compression method not only preserves the initial accuracy of the represented object but also enhances it. The neural network employed includes the vertex coordinates, the connectivity and normal information in one compact form, converting the discrete and surface polygon representation into an analytic, solid colloquial. Furthermore, the 3D object in its compressed neural form can be directly - without decompression - used for rendering. The neural compression - representation is viable to 3D transformations without the need of any anti-aliasing techniques - transformations do not disrupt the accuracy of the geometry. Our method does not su.er any scaling problem and was tested with objects of 300 to 107 polygons - such as the David of Michelangelo - achieving in all cases an order of O(b3 less bits for the representation than any other commonly known compression method. The simplicity of our algorithm and the established mathematical background of neural networks combined with their aptness for hardware implementation can establish this method as a good solution for polygon compression and if further investigated, a novel approach for 3D collision, animation and morphing.

PolyRES: A polygon-based Richards equation solver

International Nuclear Information System (INIS)

Hills, R.G.

1995-12-01

This document describes the theory, implementation, and use of a software package designed to solve the transient, two-dimensional, Richards equation for water flow in unsaturated-saturated soils. This package was specifically designed to model complex geometries with minimal input from the user and to simulate groundwater flow related to assessment of low-level radioactive waste disposal sites and engineered facilities. The spatial variation of the hydraulic properties can be defined across individual polygon-shaped subdomains, called objects. These objects combine to form a polygon-shaped model domain. Each object can have its own distribution of hydraulic parameters. The resulting model domain and polygon-shaped internal objects are mapped onto a rectangular, finite-volume, computational grid by a preprocessor. This allows the user to specify model geometry independently of the underlying grid and greatly simplifies user input for complex geometries. In addition, this approach significantly reduces the computational requirements since complex geometries are actually modeled on a rectangular grid. This results in well-structured, finite difference-like systems of equations that require minimal storage and are very efficient to solve. The documentation for this software package includes a user's manual, a detailed description of the underlying theory, and a detailed discussion of program flow. Several example problems are presented that show the use and features of the software package. The water flow predictions for several of these example problems are compared to those of another algorithm to test for prediction equivalency

The average crossing number of equilateral random polygons

International Nuclear Information System (INIS)

Diao, Y; Dobay, A; Kusner, R B; Millett, K; Stasiak, A

2003-01-01

In this paper, we study the average crossing number of equilateral random walks and polygons. We show that the mean average crossing number ACN of all equilateral random walks of length n is of the form (3/16)n ln n + O(n). A similar result holds for equilateral random polygons. These results are confirmed by our numerical studies. Furthermore, our numerical studies indicate that when random polygons of length n are divided into individual knot types, the for each knot type K can be described by a function of the form = a(n-n 0 )ln(n-n 0 ) + b(n-n 0 ) + c where a, b and c are constants depending on K and n 0 is the minimal number of segments required to form K. The profiles diverge from each other, with more complex knots showing higher than less complex knots. Moreover, the profiles intersect with the profile of all closed walks. These points of intersection define the equilibrium length of K, i.e., the chain length n e (K) at which a statistical ensemble of configurations with given knot type K-upon cutting, equilibration and reclosure to a new knot type K'-does not show a tendency to increase or decrease . This concept of equilibrium length seems to be universal, and applies also to other length-dependent observables for random knots, such as the mean radius of gyration g >

Null polygonal Wilson loops and minimal surfaces in Anti-de-Sitter space

International Nuclear Information System (INIS)

Alday, Luis F.; Maldacena, Juan

2009-01-01

We consider minimal surfaces in three dimensional anti-de-Sitter space that end at the AdS boundary on a polygon given by a sequence of null segments. The problem can be reduced to a certain generalized Sinh-Gordon equation and to SU(2) Hitchin equations. We describe in detail the mathematical problem that needs to be solved. This problem is mathematically the same as the one studied by Gaiotto, Moore and Neitzke in the context of the moduli space of certain supersymmetric theories. Using their results we can find the explicit answer for the area of a surface that ends on an eight-sided polygon. Via the gauge/gravity duality this can also be interpreted as a certain eight-gluon scattering amplitude at strong coupling. In addition, we give fairly explicit solutions for regular polygons.

Analytical approach of laser beam propagation in the hollow polygonal light pipe.

Science.gov (United States)

Zhu, Guangzhi; Zhu, Xiao; Zhu, Changhong

2013-08-10

An analytical method of researching the light distribution properties on the output end of a hollow n-sided polygonal light pipe and a light source with a Gaussian distribution is developed. The mirror transformation matrices and a special algorithm of removing void virtual images are created to acquire the location and direction vector of each effective virtual image on the entrance plane. The analytical method is demonstrated by Monte Carlo ray tracing. At the same time, four typical cases are discussed. The analytical results indicate that the uniformity of light distribution varies with the structural and optical parameters of the hollow n-sided polygonal light pipe and light source with a Gaussian distribution. The analytical approach will be useful to design and choose the hollow n-sided polygonal light pipe, especially for high-power laser beam homogenization techniques.

The structure of near polygons with quads

NARCIS (Netherlands)

Brouwer, A.E.; Wilbrink, H.A.

1983-01-01

We develop a structure theory for near polygons with quads. Main results are the existence of sub 2j-gons for 2jd and the nonexistence of regular sporadic 2d-gons for d4 with s>1 and t 2>1 and t 3t 2(t 2+1).

AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen

Czech Academy of Sciences Publication Activity Database

Gibalová, Antónia; Reňák, David; Matczuk, Katarzyna; Dupľáková, Nikoleta; Cháb, David; Twell, D.; Honys, David

2009-01-01

Roč. 70, č. 5 (2009), s. 581-601 ISSN 0167-4412 R&D Projects: GA ČR GA522/06/0896; GA ČR GA522/09/0858; GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Keywords : bZIP transcription factor * AtbZIP34 * Male gametophyte development Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.978, year: 2009

Multifrequency Piezoelectric Energy Harvester Based on Polygon-Shaped Cantilever Array

Directory of Open Access Journals (Sweden)

Dalius Mažeika

2018-01-01

Full Text Available This paper focuses on numerical and experimental investigations of a novel design piezoelectric energy harvester. Investigated harvester is based on polygon-shaped cantilever array and employs multifrequency operating principle. It consists of eight cantilevers with irregular design of cross-sectional area. Cantilevers are connected to each other by specific angle to form polygon-shaped structure. Moreover, seven seismic masses with additional lever arms are added in order to create additional rotation moment. Numerical investigation showed that piezoelectric polygon-shaped energy harvester has five natural frequencies in the frequency range from 10 Hz to 240 Hz, where the first and the second bending modes of the cantilevers are dominating. Maximum output voltage density and energy density equal to 50.03 mV/mm3 and 604 μJ/mm3, respectively, were obtained during numerical simulation. Prototype of piezoelectric harvester was made and experimental investigation was performed. Experimental measurements of the electrical characteristics showed that maximum output voltage density, energy density, and output power are 37.5 mV/mm3, 815.16 μJ/mm3, and 65.24 μW, respectively.

PNW River Reach Files -- 1:100k Waterbodies (polygons)

Data.gov (United States)

Pacific States Marine Fisheries Commission — This feature class includes the POLYGON waterbody features from the 2001 version of the PNW River Reach files Arc/INFO coverage. Separate, companion feature classes...

Geometrical bucklings for two-dimensional regular polygonal regions using the finite Fourier transformation

International Nuclear Information System (INIS)

Mori, N.; Kobayashi, K.

1996-01-01

A two-dimensional neutron diffusion equation is solved for regular polygonal regions by the finite Fourier transformation, and geometrical bucklings are calculated for regular 3-10 polygonal regions. In the case of the regular triangular region, it is found that a simple and rigorous analytic solution is obtained for the geometrical buckling and the distribution of the neutron current along the outer boundary. (author)

Finding the Most Uniform Changes in Vowel Polygon Caused by Psychological Stress

Directory of Open Access Journals (Sweden)

M. Stanek

2015-06-01

Full Text Available Using vowel polygons, exactly their parameters, is chosen as the criterion for achievement of differences between normal state of speaker and relevant speech under real psychological stress. All results were experimentally obtained by created software for vowel polygon analysis applied on ExamStress database. Selected 6 methods based on cross-correlation of different features were classified by the coefficient of variation and for each individual vowel polygon, the efficiency coefficient marking the most significant and uniform differences between stressed and normal speech were calculated. As the best method for observing generated differences resulted method considered mean of cross correlation values received for difference area value with vector length and angle parameter couples. Generally, best results for stress detection are achieved by vowel triangles created by /i/-/o/-/u/ and /a/-/i/-/o/ vowel triangles in formant planes containing the fifth formant F5 combined with other formants.

Assessment of uncertainties in core melt phenomenology and their impact on risk at the Z/IP facilities

International Nuclear Information System (INIS)

Pratt, W.T.; Ludewig, H.; Bari, R.A.; Meyer, J.F.

1983-01-01

An evaluation of core meltdown accidents in the Z/IP facilities has been performed. Containment event trees have been developed to relate the progression of a given accident to various potential containment building failure modes. An extensive uncertainty analysis related to core melt phenomenology has been performed. A major conclusion of the study is that large variations in parameters associated with major phenomenological uncertainties have a relatively minor impact on risk when external initiators are considered. This is due to the inherent capability fo the Z/IP containment buildings to contain a wide range of core meltdown accidents. 12 references, 2 tables

Shinarump Channel Polygons, North Central AUM Region, 1964, USDOE

Data.gov (United States)

U.S. Environmental Protection Agency — This is a polygon shapefile that provides Shinarump channels compiled and mapped by Young and Malan (1964) in the Monument Valley District, San Juan County, Utah,...

North Slope, Alaska ESI: HYDRO (Hydrography Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for the North...

Polygons in Seasonal Frost

Science.gov (United States)

2004-01-01

8 February 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a summertime scene in the south polar region of the red planet. A patch of bright frost--possibly water ice--is seen in the lower third of the image. Polygon patterns that have developed in the ice as it sublimes away can be seen; these are not evident in the defrosted surfaces, so they are thought to have formed in the frost. This image is located near 82.6oS, 352.5oW. Sunlight illuminates this scene from the upper left; the image covers an area 3 km (1.9 mi) wide.

North Slope, Alaska ESI: T_MAMMAL (Terrestrial Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for brown bears, caribou, and muskoxen for the North Slope, Alaska. Vector polygons in this data set...

Fair partitions of polygons: An elementary introduction

Indian Academy of Sciences (India)

In this paper we discuss only convex polygonal regions with finite number of sides. But we think this property holds ... trivial interest and have updated [9] into the present paper. 2. Proof of the conjecture N = .... surface have a proper intersection if they cut through each other either at a point or after being coincident in a finite ...

A characteristic based multiple balance approach for SN on arbitrary polygonal meshes

International Nuclear Information System (INIS)

Grove, R.E.; Pevey, R.E.

1995-01-01

The authors introduce a new approach for characteristic based S n transport on arbitrary polygonal meshes in XY geometry. They approximate a general surface as an arbitrary polygon and rotate to a coordinate system aligned with the direction of particle travel. They use exact moment balance equations on whole cells and subregions called slices and close the system by analytically solving the characteristic equation. The authors assume spatial functions for boundary conditions and cell sources and formulate analogous functions for outgoing edge and cell angular fluxes which exactly preserve spatial moments of the analytic solution. In principle, their approach provides the framework to extend characteristic methods formulated on rectangular grids to arbitrary polygonal meshes. The authors derive schemes based on step and linear spatial approximations. Their step characteristic scheme is mathematically equivalent to the Extended Step Characteristic (ESC) method but their approach and scheme differ in the geometry rotation and in the solution form. Their solutions are simple and permit edge-based transport sweep ordering

North Slope, Alaska ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for whales, seals, walruses, and polar bears for the North Slope of Alaska. Vector polygons in this data...

linear time algorithm for finding the convex ropes between two vertices of a simple polygon without triangulation

International Nuclear Information System (INIS)

Phan Thanh An

2008-06-01

The convex rope problem, posed by Peshkin and Sanderson in IEEE J. Robotics Automat, 2 (1986) pp. 53-58, is to find the counterclockwise and clockwise convex ropes starting at the vertex a and ending at the vertex b of a simple polygon, where a is on the boundary of the convex hull of the polygon and b is visible from infinity. In this paper, we present a linear time algorithm for solving this problem without resorting to a linear-time triangulation algorithm and without resorting to a convex hull algorithm for the polygon. The counterclockwise (clockwise, respectively) convex rope consists of two polylines obtained in a basic incremental strategy described in convex hull algorithms for the polylines forming the polygon from a to b. (author)

Spectral analysis of point-vortex dynamics: first application to vortex polygons in a circular domain

International Nuclear Information System (INIS)

Speetjens, M F M; Meleshko, V V; Van Heijst, G J F

2014-01-01

The present study addresses the classical problem of the dynamics and stability of a cluster of N-point vortices of equal strength arranged in a polygonal configuration (‘N-vortex polygons’). In unbounded domains, such N-vortex polygons are unconditionally stable for N⩽7. Confinement in a circular domain tightens the stability conditions to N⩽6 and a maximum polygon size relative to the domain radius. This work expands on existing studies on stability and integrability by a first giving an exploratory spectral analysis of the dynamics of N vortex polygons in circular domains. Key to this is that the spectral signature of the time evolution of vortex positions reflects their qualitative behaviour. Expressing vortex motion by a generic evolution operator (the so-called Koopman operator) provides a rigorous framework for such spectral analyses. This paves the way to further differentiation and classification of point-vortex behaviour beyond stability and integrability. The concept of Koopman-based spectral analysis is demonstrated for N-vortex polygons. This reveals that conditional stability can be seen as a local form of integrability and confirms an important generic link between spectrum and dynamics: discrete spectra imply regular (quasi-periodic) motion; continuous (sub-)spectra imply chaotic motion. Moreover, this exposes rich nonlinear dynamics as intermittency between regular and chaotic motion and quasi-coherent structures formed by chaotic vortices. (ss 1)

The use of ZIP and CART to model cryptosporidiosis in relation to climatic variables.

Science.gov (United States)

Hu, Wenbiao; Mengersen, Kerrie; Fu, Shiu-Yun; Tong, Shilu

2010-07-01

This research assesses the potential impact of weekly weather variability on the incidence of cryptosporidiosis disease using time series zero-inflated Poisson (ZIP) and classification and regression tree (CART) models. Data on weather variables, notified cryptosporidiosis cases and population size in Brisbane were supplied by the Australian Bureau of Meteorology, Queensland Department of Health, and Australian Bureau of Statistics, respectively. Both time series ZIP and CART models show a clear association between weather variables (maximum temperature, relative humidity, rainfall and wind speed) and cryptosporidiosis disease. The time series CART models indicated that, when weekly maximum temperature exceeded 31 degrees C and relative humidity was less than 63%, the relative risk of cryptosporidiosis rose by 13.64 (expected morbidity: 39.4; 95% confidence interval: 30.9-47.9). These findings may have applications as a decision support tool in planning disease control and risk-management programs for cryptosporidiosis disease.

Counting convex polygons in planar point sets

NARCIS (Netherlands)

Mitchell, J.S.B.; Rote, G.; Sundaram, Gopalakrishnan; Woeginger, G.J.

1995-01-01

Given a set S of n points in the plane, we compute in time O(n3) the total number of convex polygons whose vertices are a subset of S. We give an O(m · n3) algorithm for computing the number of convex k-gons with vertices in S, for all values k = 3,…, m; previously known bounds were exponential

Images from the Mind: BCI image reconstruction based on Rapid Serial Visual Presentations of polygon primitives

Directory of Open Access Journals (Sweden)

Luís F Seoane

2015-04-01

Full Text Available We provide a proof of concept for an EEG-based reconstruction of a visual image which is on a user's mind. Our approach is based on the Rapid Serial Visual Presentation (RSVP of polygon primitives and Brain-Computer Interface (BCI technology. In an experimental setup, subjects were presented bursts of polygons: some of them contributed to building a target image (because they matched the shape and/or color of the target while some of them did not. The presentation of the contributing polygons triggered attention-related EEG patterns. These Event Related Potentials (ERPs could be determined using BCI classification and could be matched to the stimuli that elicited them. These stimuli (i.e. the ERP-correlated polygons were accumulated in the display until a satisfactory reconstruction of the target image was reached. As more polygons were accumulated, finer visual details were attained resulting in more challenging classification tasks. In our experiments, we observe an average classification accuracy of around 75%. An in-depth investigation suggests that many of the misclassifications were not misinterpretations of the BCI concerning the users' intent, but rather caused by ambiguous polygons that could contribute to reconstruct several different images. When we put our BCI-image reconstruction in perspective with other RSVP BCI paradigms, there is large room for improvement both in speed and accuracy. These results invite us to be optimistic. They open a plethora of possibilities to explore non-invasive BCIs for image reconstruction both in healthy and impaired subjects and, accordingly, suggest interesting recreational and clinical applications.

Polygons and adhesion plaques and the disassembly and assembly of myofibrils in cardiac myocytes.

Science.gov (United States)

Lin, Z X; Holtzer, S; Schultheiss, T; Murray, J; Masaki, T; Fischman, D A; Holtzer, H

1989-06-01

Successive stages in the disassembly of myofibrils and the subsequent assembly of new myofibrils have been studied in cultures of dissociated chick cardiac myocytes. The myofibrils in trypsinized and dispersed myocytes are sequentially disassembled during the first 3 d of culture. They split longitudinally and then assemble into transitory polygons. Multiples of single sarcomeres, the cardiac polygons, are analogous to the transitory polygonal configurations assumed by stress fibers in spreading fibroblasts. They differ from their counterparts in fibroblasts in that they consist of muscle alpha-actinin vertices and muscle myosin heavy chain struts, rather than of the nonmuscle contractile protein isoforms of stress fiber polygons. EM sections reveal the vertices and struts in cardiac polygons to be typical Z and A bands. Most cardiac polygons are eliminated by day 5 of culture. Concurrent with the disassembly and elimination of the original myofibrils new myofibrils are rapidly assembled elsewhere in the same myocyte. Without exception both distal tips of each nascent myofibril terminate in adhesion plaques. The morphology and composition of the adhesion plaques capping each end of each myofibril are similar to those of the termini of stress fibers in fibroblasts. However, whereas the adhesion complexes involving stress fibers in fibroblasts consist of vinculin/nonmuscle alpha-actinin/beta- and gamma-actins, the analogous structures in myocytes involving myofibrils consist of vinculin/muscle alpha-actinin/alpha-actin. The addition of 1.7-2.0 microns sarcomeres to the distal tips of an elongating myofibril, irrespective of whether the myofibril consists of 1, 10, or several hundred tandem sarcomeres, occurs while the myofibril appears to remain linked to its respective adhesion plaques. The adhesion plaques in vitro are the equivalent of the in vivo intercalated discs, both in terms of their molecular composition and with respect to their functioning as initiating

A Teaching Polygon Makes Learning a Community Enterprise

Science.gov (United States)

Colgan, Mark; DeLong, Matt

2015-01-01

In order to strengthen departmental collegiality and improve teaching, our mathematics department instituted a Teaching Polygon. Building on the faculty development idea of Teaching Squares, each member of our department visited one class taught by every other department member in a round-robin fashion during the school year. The visits were…

Hamiltonian evolutions of twisted polygons in RPn

International Nuclear Information System (INIS)

Beffa, Gloria Marì; Wang, Jing Ping

2013-01-01

In this paper we find a discrete moving frame and their associated invariants along projective polygons in RP n , and we use them to describe invariant evolutions of projective N-gons. We then apply a reduction process to obtain a natural Hamiltonian structure on the space of projective invariants for polygons, establishing a close relationship between the projective N-gon invariant evolutions and the Hamiltonian evolutions on the invariants of the flow. We prove that any Hamiltonian evolution is induced on invariants by an invariant evolution of N-gons—what we call a projective realization—and both evolutions are connected explicitly in a very simple way. Finally, we provide a completely integrable evolution (the Boussinesq lattice related to the lattice W 3 -algebra), its projective realization in RP 2 and its Hamiltonian pencil. We generalize both structures to n-dimensions and we prove that they are Poisson, defining explicitly the n-dimensional generalization of the planar evolution (a discretization of the W n -algebra). We prove that the generalization is completely integrable, and we also give its projective realization, which turns out to be very simple. (paper)

Double level selection in a constitutional dynamic library of coordination driven supramolecular polygons.

Science.gov (United States)

Rancan, Marzio; Tessarolo, Jacopo; Casarin, Maurizio; Zanonato, Pier Luigi; Quici, Silvio; Armelao, Lidia

2014-07-21

A constitutional dynamic library (CDL) of Cu(II) metallo-supramolecular polygons has been studied as a bench test to examine an interesting selection case based on molecular recognition. Sorting of the CDL polygons is achieved through a proper guest that is hosted into the triangular metallo-macrocycle constituent. Two selection mechanisms are observed, a guest induced path and a guest templated self-assembly (virtual library approach). Remarkably, the triangular host can accommodate several guests with a degree of selectivity ranging from ∼1 to ∼10(4) for all possible guest pairs. A double level selection operates: guests drive the CDL toward the triangular polygon, and, at the same time, this is able to pick a specific guest from a set of competitive molecules, according to a selectivity-affinity correlation. Association constants of the host-guest systems have been determined. Guest competition and exchange studies have been analyzed through variable temperature UV-Vis absorption spectroscopy and single crystal X-ray diffraction studies. Molecular structures and electronic properties of the triangular polygon and of the host-guest systems also have been studied by means of all electrons density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations including dispersive contributions. DFT outcomes ultimately indicate the dispersive nature of the host-guest interactions, while TDDFT results allow a thorough assignment of the host and host-guests spectral features.

Matching soil grid unit resolutions with polygon unit scales for DNDC modelling of regional SOC pool

Science.gov (United States)

Zhang, H. D.; Yu, D. S.; Ni, Y. L.; Zhang, L. M.; Shi, X. Z.

2015-03-01

Matching soil grid unit resolution with polygon unit map scale is important to minimize uncertainty of regional soil organic carbon (SOC) pool simulation as their strong influences on the uncertainty. A series of soil grid units at varying cell sizes were derived from soil polygon units at the six map scales of 1:50 000 (C5), 1:200 000 (D2), 1:500 000 (P5), 1:1 000 000 (N1), 1:4 000 000 (N4) and 1:14 000 000 (N14), respectively, in the Tai lake region of China. Both format soil units were used for regional SOC pool simulation with DeNitrification-DeComposition (DNDC) process-based model, which runs span the time period 1982 to 2000 at the six map scales, respectively. Four indices, soil type number (STN) and area (AREA), average SOC density (ASOCD) and total SOC stocks (SOCS) of surface paddy soils simulated with the DNDC, were attributed from all these soil polygon and grid units, respectively. Subjecting to the four index values (IV) from the parent polygon units, the variation of an index value (VIV, %) from the grid units was used to assess its dataset accuracy and redundancy, which reflects uncertainty in the simulation of SOC. Optimal soil grid unit resolutions were generated and suggested for the DNDC simulation of regional SOC pool, matching with soil polygon units map scales, respectively. With the optimal raster resolution the soil grid units dataset can hold the same accuracy as its parent polygon units dataset without any redundancy, when VIV indices was assumed as criteria to the assessment. An quadratic curve regression model y = -8.0 × 10-6x2 + 0.228x + 0.211 (R2 = 0.9994, p < 0.05) was revealed, which describes the relationship between optimal soil grid unit resolution (y, km) and soil polygon unit map scale (1:x). The knowledge may serve for grid partitioning of regions focused on the investigation and simulation of SOC pool dynamics at certain map scale.

Determination of wave direction from linear and polygonal arrays

Digital Repository Service at National Institute of Oceanography (India)

Fernandes, A.A; Gouveia, A; Nagarajan, R.

documentation of Borgman (1974) in case of linear arrays; and the second issue being the failure of Esteva (1976, 1977) to correctly determine wave directions over the design range 25 to 7 sec of his polygonal array. This paper presents requisite documentation...

Visual feature discrimination versus compression ratio for polygonal shape descriptors

Science.gov (United States)

Heuer, Joerg; Sanahuja, Francesc; Kaup, Andre

2000-10-01

In the last decade several methods for low level indexing of visual features appeared. Most often these were evaluated with respect to their discrimination power using measures like precision and recall. Accordingly, the targeted application was indexing of visual data within databases. During the standardization process of MPEG-7 the view on indexing of visual data changed, taking also communication aspects into account where coding efficiency is important. Even if the descriptors used for indexing are small compared to the size of images, it is recognized that there can be several descriptors linked to an image, characterizing different features and regions. Beside the importance of a small memory footprint for the transmission of the descriptor and the memory footprint in a database, eventually the search and filtering can be sped up by reducing the dimensionality of the descriptor if the metric of the matching can be adjusted. Based on a polygon shape descriptor presented for MPEG-7 this paper compares the discrimination power versus memory consumption of the descriptor. Different methods based on quantization are presented and their effect on the retrieval performance are measured. Finally an optimized computation of the descriptor is presented.

Cook Inlet and Kenai Peninsula, Alaska ESI: INDEX (Index Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries used in the creation of the Environmental Sensitivity Index (ESI) for Cook Inlet and Kenai...

Coastal Resources Atlas: Long Island: HYDRO (Hydrography Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for Long Island,...

Bristol Bay, Alaska Subarea ESI: HYDRO (Hydrography Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for the Bristol...

Selection of industrial robots using the Polygons area method

Directory of Open Access Journals (Sweden)

Mortaza Honarmande Azimi

2014-08-01

Full Text Available Selection of robots from the several proposed alternatives is a very important and tedious task. Decision makers are not limited to one method and several methods have been proposed for solving this problem. This study presents Polygons Area Method (PAM as a multi attribute decision making method for robot selection problem. In this method, the maximum polygons area obtained from the attributes of an alternative robot on the radar chart is introduced as a decision-making criterion. The results of this method are compared with other typical multiple attribute decision-making methods (SAW, WPM, TOPSIS, and VIKOR by giving two examples. To find similarity in ranking given by different methods, Spearman’s rank correlation coefficients are obtained for different pairs of MADM methods. It was observed that the introduced method is in good agreement with other well-known MADM methods in the robot selection problem.

Sex differences in mental rotation with polygons of different complexity: Do men utilize holistic processes whereas women prefer piecemeal ones?

Science.gov (United States)

Heil, Martin; Jansen-Osmann, Petra

2008-05-01

Sex differences in mental rotation were investigated as a function of stimulus complexity with a sample size of N = 72. Replicating earlier findings with polygons, mental rotation was faster for males than for females, and reaction time increased with more complex polygons. Additionally, sex differences increased for complex polygons. Most importantly, however, mental rotation speed decreased with increasing complexity for women but did not change for men. Thus, the sex effects reflect a difference in strategy, with women mentally rotating the polygons in an analytic, piecemeal fashion and men using a holistic mode of mental rotation.

Biogeochemical controls on microbial CH4 and CO2 production in Arctic polygon tundra

Science.gov (United States)

Zheng, J.

2016-12-01

Accurately simulating methane (CH4) and carbon dioxide (CO2) emissions from high latitude soils is critically important for reducing uncertainties in soil carbon-climate feedback predictions. The signature polygonal ground of Arctic tundra generates high level of heterogeneity in soil thermal regime, hydrology and oxygen availability, which limits the application of current land surface models with simple moisture response functions. We synthesized CH4 and CO2 production measurements from soil microcosm experiments across a wet-to dry permafrost degradation gradient from low-centered (LCP) to flat-centered (FCP), and high-centered polygons (HCP) to evaluate the relative importance of biogeochemical processes and their response to warming. More degraded polygon (HCP) showed much less carbon loss as CO2 or CH4, while the total CO2 production from FCP is comparable to that from LCP. Maximum CH4 production from the active layer of LCP was nearly 10 times that of permafrost and FCP. Multivariate analyses identifies gravimetric water content and organic carbon content as key predictors for CH4 production, and iron reduction as a key regulator of pH. The synthesized data are used to validate the geochemical model PHREEQC with extended anaerobic organic substrate turnover, fermentation, iron reduction, and methanogenesis reactions. Sensitivity analyses demonstrate that better representations of anaerobic processes and their pH dependency could significantly improve estimates of CH4 and CO2 production. The synthesized data suggest local decreases in CH4 production along the polygon degradation gradient, which is consistent with previous surface flux measurements. Methane oxidation occurring through the soil column of degraded polygons contributes to their low CH4 emissions as well.

Coastal Resources Atlas: Long Island: REPTILES (Reptile and Amphibian Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for sea turtles, estuarine turtles, and amphibians for Long Island, New York. Vector polygons in this data...

Cook Inlet and Kenai Peninsula, Alaska ESI: FISH (Fish Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for herring spawning areas in Cook Inlet and Kenai Peninsula, Alaska. Vector polygons in this data set represent...

Coastal Resources Atlas: Long Island: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for seals, whales, and porpoises for Long Island, New York. Vector polygons in this data set represent...

Influence of macroscopic shear deformation on polygonization and recrystallization of molybdenum crystals

International Nuclear Information System (INIS)

Larikov, L.N.; Belyakova, M.N.; Maksimenko, E.A.; Mudruk, P.V.

1984-01-01

The effect of shear bands on polygonization and recrystallization is studied on molybdenum monocrystals deformed by compression. A sharp bend of the lattice is shown to be a structural condition necessary for arising the shear step. Internal stress relaxation strongly changes kinetics of softening processes in compressed molybdenum crystals: it slows down polygonization under low-temperature heating (below 700 deg C) and accelerates it under high-temperature heating (higher 1000 deg C). Under the effect of relaxation of internal streses recrystallization in the investigated crystals is similar to dynamical: recrystallized grains are distorted and they have a developed substructure

Polygonal patterned peatlands of the White Sea islands

Science.gov (United States)

Kutenkov, S. A.; Kozhin, M. N.; Golovina, E. O.; Kopeina, E. I.; Stoikina, N. V.

2018-03-01

The summits and slopes of some islands along the northeastern and northern coasts of the White Sea are covered with dried out peatlands. The thickness of the peat deposit is 30–80 cm and it is separated by troughs into gently sloping polygonal peat blocks up to 20 m2 in size. On some northern islands the peat blocks have permafrost cores. The main components of the dried out peatlands vegetation are dwarf shrubs and lichens. The peat stratigraphy reveals two stages of peatland development. On the first stage, the islands were covered with wet cottongrass carpets, which repeated the convex relief shape. On the second stage, they were occupied by the xeromorphic vegetation. We suggest that these polygonal patterned peatlands are the remnants of blanket bogs, the formation of which assumes the conditions of a much more humid climate in the historical past. The time of their active development was calculated according to the White Sea level changes and radiocarbon dates from 1000–4000 BP.

Nonimaging polygonal mirrors achieving uniform irradiance distributions on concentrating photovoltaic cells.

Science.gov (United States)

Schmitz, Max; Dähler, Fabian; Elvinger, François; Pedretti, Andrea; Steinfeld, Aldo

2017-04-10

We introduce a design methodology for nonimaging, single-reflection mirrors with polygonal inlet apertures that generate a uniform irradiance distribution on a polygonal outlet aperture, enabling a multitude of applications within the domain of concentrated photovoltaics. Notably, we present single-mirror concentrators of square and hexagonal perimeter that achieve very high irradiance uniformity on a square receiver at concentrations ranging from 100 to 1000 suns. These optical designs can be assembled in compound concentrators with maximized active area fraction by leveraging tessellation. More advanced multi-mirror concentrators, where each mirror individually illuminates the whole area of the receiver, allow for improved performance while permitting greater flexibility for the concentrator shape and robustness against partial shading of the inlet aperture.

Cook Inlet and Kenai Peninsula, Alaska ESI: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for razor clams in Cook Inlet and Kenai Peninsula, Alaska. Vector polygons in this data set represent locations of...

Coastal Resources Atlas: Long Island: T_MAMMAL (Terrestrial Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for northern river otter, mink, muskrat, and beaver for Long Island, New York. Vector polygons in this data...

Subsatellite polygon for studying hydrophysical processes in the Black Sea shelf-slope zone

Science.gov (United States)

Zatsepin, A. G.; Ostrovskii, A. G.; Kremenetskiy, V. V.; Nizov, S. S.; Piotukh, V. B.; Soloviev, V. A.; Shvoev, D. A.; Tsibul'sky, A. L.; Kuklev, S. B.; Kukleva, O. N.; Moskalenko, L. V.; Podymov, O. I.; Baranov, V. I.; Kondrashov, A. A.; Korzh, A. O.; Kubryakov, A. A.; Soloviev, D. M.; Stanichny, S. V.

2014-01-01

The first data on the creation of the subsatellite polygon on the Black Sea shelf and continental slope in the Gelendzhik area (designed in order to permanently monitor the state of the aquatic environment and biota) and the plans for maintaining and developing this polygon are presented. The autonomous measuring systems of the polygon in the composition of bottom stations with acoustic Doppler current profilers (ADCP), Aqualog robotic profilers, and thermo-chains on moored buoy stations should make it possible to regularly obtain hydrophysical, hydrochemical, and bio-optical data with a high spatial-time resolution and transmit these data to the coastal center on a real-time basis. These field data should be used to study the characteristics and formation mechanisms of the marine environment and biota variability, as well as the water-exchange processes in the shelf-deep basin system, ocean-atmosphere coupling, and many other processes. These data are used to calibrate the satellite measurements and verify the water circulation numerical simulation. It is assumed to use these data in order to warn about the hazardous natural phenomena and control the marine environment state and its variation under the action of anthropogenic and natural factors, including climatic trends. It is planned to use the polygon subsatellite monitoring methods and equipment in other coastal areas, including other Black Sea sectors, in order to create a unified system for monitoring the Black Sea shelf-slope zone.

The growth of the mean average crossing number of equilateral polygons in confinement

International Nuclear Information System (INIS)

Arsuaga, J; Borgo, B; Scharein, R; Diao, Y

2009-01-01

The physical and biological properties of collapsed long polymer chains as well as of highly condensed biopolymers (such as DNA in all organisms) are known to be determined, at least in part, by their topological and geometrical properties. With this purpose of characterizing the topological properties of such condensed systems equilateral random polygons restricted to confined volumes are often used. However, very few analytical results are known. In this paper, we investigate the effect of volume confinement on the mean average crossing number (ACN) of equilateral random polygons. The mean ACN of knots and links under confinement provides a simple alternative measurement for the topological complexity of knots and links in the statistical sense. For an equilateral random polygon of n segments without any volume confinement constrain, it is known that its mean ACN (ACN) is of the order 3/16 n log n + O(n). Here we model the confining volume as a simple sphere of radius R. We provide an analytical argument which shows that (ACN) of an equilateral random polygon of n segments under extreme confinement (meaning R 2 ). We propose to model the growth of (ACN) as a(R)n 2 + b(R)nln(n) under a less-extreme confinement condition, where a(R) and b(R) are functions of R with R being the radius of the confining sphere. Computer simulations performed show a fairly good fit using this model.

Vibrational resonances of nonrigid vehicles: Polygonization and ripple patterns

NARCIS (Netherlands)

Dekker, H.

2009-01-01

The well-known phenomenon of ripples on roads has its modern counterpart in ripple patterns on railroads and polygonization of wheels on state-of-the-art lightrail streetcars. Here we study an idealized mechanical suspension model for the vibrational frequency response of a buggy with a nonrigid

design chart procedures for polygonal concrete-filled steel columns

African Journals Online (AJOL)

ADMIN

hexagonal and octagonal steel-concrete composite columns subjected to ... This paper also outlines procedures that will enable preparation of ... buildings and in a variety of large-span building ... Likewise, hot-rolled steel tubes are used while ... small moderate large. Fig. 2. Possible arrangement of composite polygonal ...

On the areas of various bodies in the Euclidean space: The case of irregular convex polygons

International Nuclear Information System (INIS)

Ozoemena, P.C.

1988-11-01

A theorem is proposed for the areas of n-sided irregular convex polygons, of given length of sides. The theorem is illustrated as a simple but powerful one in estimating the areas of irregular polygons, being dependent only on the number of sides n (and not on any of the explicit angles) of the irregular polygon. Finally, because of the global symmetry shown by equilateral triangles, squares and circles under group (gauge) theory, the relationships governing their areas, when they are inscribed or escribed in one another are discussed as riders, and some areas of their applications in graph theory, ratios and maxima and minima problems of differential calculus briefly mentioned. (author). 11 refs, 6 figs, 1 tab

3-D surface reconstruction of patient specific anatomic data using a pre-specified number of polygons.

Science.gov (United States)

Aharon, S; Robb, R A

1997-01-01

Virtual reality environments provide highly interactive, natural control of the visualization process, significantly enhancing the scientific value of the data produced by medical imaging systems. Due to the computational and real time display update requirements of virtual reality interfaces, however, the complexity of organ and tissue surfaces which can be displayed is limited. In this paper, we present a new algorithm for the production of a polygonal surface containing a pre-specified number of polygons from patient or subject specific volumetric image data. The advantage of this new algorithm is that it effectively tiles complex structures with a specified number of polygons selected to optimize the trade-off between surface detail and real-time display rates.

Near-Surface Profiles of Water Stable Isotope Components and Indicated Transitional History of Ice-Wedge Polygons Near Barrow

Science.gov (United States)

Iwahana, G.; Wilson, C.; Newman, B. D.; Heikoop, J. M.; Busey, R.

2017-12-01

Wetlands associated with ice-wedge polygons are commonly distributed across the Arctic Coastal Plain of northern Alaska, a region underlain by continuous permafrost. Micro-topography of the ice-wedge polygons controls local hydrology, and the micro-topography could be altered due to factors such like surface vegetation, wetness, freeze-thaw cycles, and permafrost degradation/aggradation under climate change. Understanding status of the wetlands in the near future is important because it determines biogeochemical cycle, which drives release of greenhouse gases from the ground. However, transitional regime of the ice-wedge polygons under the changing climate is not fully understood. In this study, we analyzed geochemistry of water extracted from frozen soil cores sampled down to about 1m depth in 2014 March at NGEE-Arctic sites in the Barrow Environmental Observatory. The cores were sampled from troughs/rims/centers of five different low-centered or flat-centered polygons. The frozen cores are divided into 5-10cm cores for each location, thawed in sealed plastic bags, and then extracted water was stored in vials. Comparison between the profiles of geochemistry indicated connection of soil water in the active layer at different location in a polygon, while it revealed that distinctly different water has been stored in permafrost layer at troughs/rims/centers of some polygons. Profiles of volumetric water content (VWC) showed clear signals of freeze-up desiccation in the middle of saturated active layers as low VWC anomalies at most sampling points. Water in the active layer and near-surface permafrost was classified into four categories: ice wedge / fresh meteoric / transitional / highly fractionated water. The overall results suggested prolonged separation of water in the active layer at the center of low-centered polygons without lateral connection in water path in the past.

Electron localization and optical absorption of polygonal quantum rings

Science.gov (United States)

Sitek, Anna; Serra, Llorenç; Gudmundsson, Vidar; Manolescu, Andrei

2015-06-01

We investigate theoretically polygonal quantum rings and focus mostly on the triangular geometry where the corner effects are maximal. Such rings can be seen as short core-shell nanowires, a generation of semiconductor heterostructures with multiple applications. We show how the geometry of the sample determines the electronic energy spectrum, and also the localization of electrons, with effects on the optical absorption. In particular, we show that irrespective of the ring shape low-energy electrons are always attracted by corners and are localized in their vicinity. The absorption spectrum in the presence of a magnetic field shows only two peaks within the corner-localized state domain, each associated with different circular polarization. This picture may be changed by an external electric field which allows previously forbidden transitions, and thus enables the number of corners to be determined. We show that polygonal quantum rings allow absorption of waves from distant ranges of the electromagnetic spectrum within one sample.

Origami tubes with reconfigurable polygonal cross-sections.

Science.gov (United States)

Filipov, E T; Paulino, G H; Tachi, T

2016-01-01

Thin sheets can be assembled into origami tubes to create a variety of deployable, reconfigurable and mechanistically unique three-dimensional structures. We introduce and explore origami tubes with polygonal, translational symmetric cross-sections that can reconfigure into numerous geometries. The tubular structures satisfy the mathematical definitions for flat and rigid foldability, meaning that they can fully unfold from a flattened state with deformations occurring only at the fold lines. The tubes do not need to be straight and can be constructed to follow a non-linear curved line when deployed. The cross-section and kinematics of the tubular structures can be reprogrammed by changing the direction of folding at some folds. We discuss the variety of tubular structures that can be conceived and we show limitations that govern the geometric design. We quantify the global stiffness of the origami tubes through eigenvalue and structural analyses and highlight the mechanical characteristics of these systems. The two-scale nature of this work indicates that, from a local viewpoint, the cross-sections of the polygonal tubes are reconfigurable while, from a global viewpoint, deployable tubes of desired shapes are achieved. This class of tubes has potential applications ranging from pipes and micro-robotics to deployable architecture in buildings.

Origami tubes with reconfigurable polygonal cross-sections

Science.gov (United States)

Filipov, E. T.; Paulino, G. H.; Tachi, T.

2016-01-01

Thin sheets can be assembled into origami tubes to create a variety of deployable, reconfigurable and mechanistically unique three-dimensional structures. We introduce and explore origami tubes with polygonal, translational symmetric cross-sections that can reconfigure into numerous geometries. The tubular structures satisfy the mathematical definitions for flat and rigid foldability, meaning that they can fully unfold from a flattened state with deformations occurring only at the fold lines. The tubes do not need to be straight and can be constructed to follow a non-linear curved line when deployed. The cross-section and kinematics of the tubular structures can be reprogrammed by changing the direction of folding at some folds. We discuss the variety of tubular structures that can be conceived and we show limitations that govern the geometric design. We quantify the global stiffness of the origami tubes through eigenvalue and structural analyses and highlight the mechanical characteristics of these systems. The two-scale nature of this work indicates that, from a local viewpoint, the cross-sections of the polygonal tubes are reconfigurable while, from a global viewpoint, deployable tubes of desired shapes are achieved. This class of tubes has potential applications ranging from pipes and micro-robotics to deployable architecture in buildings. PMID:26997894

Analytical algorithm for the generation of polygonal projection data for tomographic reconstruction

International Nuclear Information System (INIS)

Davis, G.R.

1996-01-01

Tomographic reconstruction algorithms and filters can be tested using a mathematical phantom, that is, a computer program which takes numerical data as its input and outputs derived projection data. The input data is usually in the form of pixel ''densities'' over a regular grid, or position and dimensions of simple, geometrical objects. The former technique allows a greater variety of objects to be simulated, but is less suitable in the case when very small (relative to the ray-spacing) features are to be simulated. The second technique is normally used to simulate biological specimens, typically a human skull, modelled as a number of ellipses. This is not suitable for simulating non-biological specimens with features such as straight edges and fine cracks. We have therefore devised an algorithm for simulating objects described as a series of polygons. These polygons, or parts of them, may be smaller than the ray-spacing and there is no limit, except that imposed by computing resources, on the complexity, number or superposition of polygons. A simple test of such a phantom, reconstructed using the filtered back-projection method, revealed reconstruction artefacts not normally seen with ''biological'' phantoms. (orig.)

Integrating Carbon Flux Measurements with Hydrologic and Thermal Responses in a Low Centered Ice-Wedge Polygon near Prudhoe Bay, AK

Science.gov (United States)

Larson, T.; Young, M.; Caldwell, T. G.; Abolt, C.

2014-12-01

Substantial attention is being devoted to soil organic carbon (SOC) dynamics in Polar Regions, given the potential impacts of CO2 and methane (CH4) release into the atmosphere. In this study, which is part of a broader effort to quantify carbon loss pathways in patterned Arctic permafrost soils, CH4 and CO2 flux measurements were recorded from a site approximately 30 km south of Deadhorse, Alaska and 1 km west of the Dalton Highway. Samples were collected in late July, 2014 using six static flux chambers that were located within a single low-centered ice-wedge polygon. Three flux chambers were co-located (within a 1 m triangle of each other) near the center of the polygon and three were co-located (along a 1.5 m line) on the ridge adjacent to a trough. Soil in the center of the polygon was 100% water saturated, whereas water saturation measured on the ridge ranged between 25-50%. Depth to ice table was approximately 50 cm near the center of the polygon and 40 cm at the ridge. Temperature depth probes were installed within the center and ridge of the polygon. Nine gas measurements were collected from each chamber over a 24 h period, stored in helium-purged Exetainer vials, shipped to a laboratory, and analyzed using gas chromatography. Measured cumulative methane fluxes were linear over the 24 h period demonstrating constant methane production, but considerable spatial variability in flux was observed (0.1 to 4.7 mg hr-1 m-2 in polygon center, and 0.003 to 0.36 mg hr-1m-2 on polygon ridge). Shallow soil temperatures varied between 1.3 and 9.8oC in the center and 0.6 to 7.5oC in the rim of the polygon. Air temperatures varied between 1.3 and 4.6oC. CO2 fluxes were greater than methane fluxes and more consistent at each co-location; ranging from 21.7 to 36.6 mg hr-1 m-2 near the polygon centers and 3.5 to 29.1 mg hr-1 m-2 in the drier polygon ridge. Results are consistent with previous observations that methanogenesis is favored in a water saturated active layer. The

A Novel Shape-Free Plane Quadratic Polygonal Hybrid Stress-Function Element

Directory of Open Access Journals (Sweden)

Pei-Lei Zhou

2015-01-01

Full Text Available A novel plane quadratic shape-free hybrid stress-function (HS-F polygonal element is developed by employing the principle of minimum complementary energy and the fundamental analytical solutions of the Airy stress function. Without construction of displacement interpolation function, the formulations of the new model are much simpler than those of the displacement-based polygonal elements and can be degenerated into triangular or quadrilateral elements directly. In particular, it is quite insensitive to various mesh distortions and even can keep precision when element shape is concave. Furthermore, the element does not show any spurious zero energy modes. Numerical examples show the excellent performance of the new element, denoted by HSF-AP-19β, in both displacement and stress solutions.

Multi-scale Clustering of Points Synthetically Considering Lines and Polygons Distribution

Directory of Open Access Journals (Sweden)

YU Li

2015-10-01

Full Text Available Considering the complexity and discontinuity of spatial data distribution, a clustering algorithm of points was proposed. To accurately identify and express the spatial correlation among points,lines and polygons, a Voronoi diagram that is generated by all spatial features is introduced. According to the distribution characteristics of point's position, an area threshold used to control clustering granularity was calculated. Meanwhile, judging scale convergence by constant area threshold, the algorithm classifies spatial features based on multi-scale, with an O(n log n running time.Results indicate that spatial scale converges self-adaptively according with distribution of points.Without the custom parameters, the algorithm capable to discover arbitrary shape clusters which be bound by lines and polygons, and is robust for outliers.

Variation Analysis of Physiological Traits in Betula platyphylla Overexpressing TaLEA-ThbZIP Gene under Salt Stress.

Directory of Open Access Journals (Sweden)

Xiyang Zhao

Full Text Available The aim of this study was to determine whether transgenic birch (Betula platyphylla ectopic overexpressing a late embryogenesis abundant (LEA gene and a basic leucine zipper (bZIP gene from the salt-tolerant genus Tamarix (salt cedar show increased tolerance to salt (NaCl stress. Co-transfer of TaLEA and ThbZIP in birch under the control of two independent CaMV 35S promoters significantly enhanced salt stress. PCR and northern blot analyses indicated that the two genes were ectopically overexpressed in several dual-gene transgenic birch lines. We compared the effects of salt stress among three transgenic birch lines (L-4, L-5, and L-8 and wild type (WT. In all lines, the net photosynthesis values were higher before salt stress treatment than afterwards. After the salt stress treatment, the transgenic lines L-4 and L-8 showed higher values for photosynthetic traits, chlorophyll fluorescence, peroxidase and superoxide dismutase activities, and lower malondialdehyde and Na+ contents, compared with those in WT and L-5. These different responses to salt stress suggested that the transcriptional level of the TaLEA and ThbZIP genes differed among the transgenic lines, resulting in a variety of genetic and phenotypic effects. The results of this research can provide a theoretical basis for the genetic engineering of salt-tolerant trees.

Virginia ESI: ESI (Environmental Sensitivity Index Shoreline Types - Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing the shoreline and coastal habitats for Virginia, classified according to the Environmental Sensitivity...

Maryland ESI: ESI (Environmental Sensitivity Index Shoreline Types - Lines and Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing the shoreline and coastal habitats for Maryland, classified according to the Environmental Sensitivity...

Behavior of the polygonal HEPA filter exposed to water droplets carried by the offgas flow

International Nuclear Information System (INIS)

Jannakos, K.; Potgeter, G.; Legner, W.

1991-01-01

A polygonal high-efficiency particulate air (HEPA) filter element has been developed and tested with a view to cleaning the dissolver offgas from reprocessing plants. It is likewise suited to filter process offgases generated in other plants. Due to its high dew point (about 30 degree C) the dissolver offgas, before being directed into the HEPA filter, is heated with a gas heater to approx. 100 degree C so that condensation in the pipework upstream of the filter and in the filter proper is avoided. In case of failure of the heater the offgas may undergo condensation upstream of the HEPA filter until it is bypassed to a standby heater or a standby filter system. Consequently, the filter may be loaded with water droplets. therefore, experiments have been performed with a view to estimating the behavior of the polygonal filter element when exposed to condensate droplets in a real plant. According to the experiments performed so far it can be anticipated that in case of failure of the heater the amount of condensate produced until bypassing to a standby system will not damage a new or little loaded polygonal filter element. The experiments will be carried on with the goal of investigating the behavior of a heavily loaded polygonal filter element exposed to water droplets

Where Do Freestanding Emergency Departments Choose to Locate? A National Inventory and Geographic Analysis in Three States.

Science.gov (United States)

Schuur, Jeremiah D; Baker, Olesya; Freshman, Jaclyn; Wilson, Michael; Cutler, David M

2017-04-01

We determine the number and location of freestanding emergency departments (EDs) across the United States and determine the population characteristics of areas where freestanding EDs are located. We conducted a systematic inventory of US freestanding EDs. For the 3 states with the highest number of freestanding EDs, we linked demographic, insurance, and health services data, using the 5-digit ZIP code corresponding to the freestanding ED's location. To create a comparison nonfreestanding ED group, we matched 187 freestanding EDs to 1,048 nonfreestanding ED ZIP codes on land and population within state. We compared differences in demographic, insurance, and health services factors between matched ZIP codes with and without freestanding EDs, using univariate regressions with weights. We identified 360 freestanding EDs located in 30 states; 54.2% of freestanding EDs were hospital satellites, 36.6% were independent, and 9.2% were not classifiable. The 3 states with the highest number of freestanding EDs accounted for 66% of all freestanding EDs: Texas (181), Ohio (34), and Colorado (24). Across all 3 states, freestanding EDs were located in ZIP codes that had higher incomes and a lower proportion of the population with Medicaid. In Texas and Ohio, freestanding EDs were located in ZIP codes with a higher proportion of the population with private insurance. In Texas, freestanding EDs were located in ZIP codes that had fewer Hispanics, had a greater number of hospital-based EDs and physician offices, and had more physician visits and medical spending per year than ZIP codes without a freestanding ED. In Ohio, freestanding EDs were located in ZIP codes with fewer hospital-based EDs. In Texas, Ohio, and Colorado, freestanding EDs were located in areas with a better payer mix. The location of freestanding EDs in relation to other health care facilities and use and spending on health care varied between states. Copyright © 2016 American College of Emergency Physicians

Computing the Fréchet distance between folded polygons

NARCIS (Netherlands)

Cook IV, A.F.; Driemel, A.; Sherette, J.; Wenk, C.

2015-01-01

Computing the Fréchet distance for surfaces is a surprisingly hard problem and the only known polynomial-time algorithm is limited to computing it between flat surfaces. We study the problem of computing the Fréchet distance for a class of non-flat surfaces called folded polygons. We present a

hp-version discontinuous Galerkin methods on polygonal and polyhedral meshes

CERN Document Server

Cangiani, Andrea; Georgoulis, Emmanuil H; Houston, Paul

2017-01-01

Over the last few decades discontinuous Galerkin finite element methods (DGFEMs) have been witnessed tremendous interest as a computational framework for the numerical solution of partial differential equations. Their success is due to their extreme versatility in the design of the underlying meshes and local basis functions, while retaining key features of both (classical) finite element and finite volume methods. Somewhat surprisingly, DGFEMs on general tessellations consisting of polygonal (in 2D) or polyhedral (in 3D) element shapes have received little attention within the literature, despite the potential computational advantages. This volume introduces the basic principles of hp-version (i.e., locally varying mesh-size and polynomial order) DGFEMs over meshes consisting of polygonal or polyhedral element shapes, presents their error analysis, and includes an extensive collection of numerical experiments. The extreme flexibility provided by the locally variable elemen t-shapes, element-sizes, and elemen...

Stoichiometric control of multiple different tectons in coordination-driven self-assembly: preparation of fused metallacyclic polygons.

Science.gov (United States)

Lee, Junseong; Ghosh, Koushik; Stang, Peter J

2009-09-02

We present a general strategy for the synthesis of stable, multicomponent fused polygon complexes in which coordination-driven self-assembly allows for single supramolecular species to be formed from multicomponent self-assembly and the shape of the obtained polygons can be controlled simply by changing the ratio of individual components. The compounds have been characterized by multinuclear NMR spectroscopy and electrospray ionization mass spectrometry.

Biophysical properties of regions flanking the bHLH-Zip motif in the p22 Max protein

International Nuclear Information System (INIS)

Pursglove, Sharon E.; Fladvad, Malin; Bellanda, Massimo; Moshref, Ahmad; Henriksson, Marie; Carey, Jannette; Sunnerhagen, Maria

2004-01-01

The Max protein is the central dimerization partner in the Myc-Max-Mad network of transcriptional regulators, and a founding structural member of the family of basic-helix-loop-helix (bHLH)-leucine zipper (Zip) proteins. Biologically important regions flanking its bHLH-Zip motif have been disordered or absent in crystal structures. The present study shows that these regions are resistant to proteolysis in both the presence and absence of DNA, and that Max dimers containing both flanking regions have significantly higher helix content as measured by circular dichroism than that predicted from the crystal structures. Nuclear magnetic resonance measurements in the absence of DNA also support the inferred structural order. Deletion of both flanking regions is required to achieve maximal DNA affinity as measured by EMSA. Thus, the previously observed functionalities of these Max regions in DNA binding, phosphorylation, and apoptosis are suggested to be linked to structural properties

The Knot Spectrum of Confined Random Equilateral Polygons

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Diao Y.

2014-01-01

Full Text Available It is well known that genomic materials (long DNA chains of living organisms are often packed compactly under extreme confining conditions using macromolecular self-assembly processes but the general DNA packing mechanism remains an unsolved problem. It has been proposed that the topology of the packed DNA may be used to study the DNA packing mechanism. For example, in the case of (mutant bacteriophage P4, DNA molecules packed inside the bacteriophage head are considered to be circular since the two sticky ends of the DNA are close to each other. The DNAs extracted from the capsid without separating the two ends can thus preserve the topology of the (circular DNAs. It turns out that the circular DNAs extracted from bacteriophage P4 are non-trivially knotted with very high probability and with a bias toward chiral knots. In order to study this problem using a systematic approach based on mathematical modeling, one needs to introduce a DNA packing model under extreme volume confinement condition and test whether such a model can produce the kind of knot spectrum observed in the experiments. In this paper we introduce and study a model of equilateral random polygons con_ned in a sphere. This model is not meant to generate polygons that model DNA packed in a virus head directly. Instead, the average topological characteristics of this model may serve as benchmark data for totally randomly packed circular DNAs. The difference between the biologically observed topological characteristics and our benchmark data might reveal the bias of DNA packed in the viral capsids and possibly lead to a better understanding of the DNA packing mechanism, at least for the bacteriophage DNA. The purpose of this paper is to provide information about the knot spectrum of equilateral random polygons under such a spherical confinement with length and confinement ratios in a range comparable to circular DNAs packed inside bacteriophage heads.

POLYGON - A New Fundamental Movement Skills Test for 8 Year Old Children: Construction and Validation.

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Zuvela, Frane; Bozanic, Ana; Miletic, Durdica

2011-01-01

Inadequately adopted fundamental movement skills (FMS) in early childhood may have a negative impact on the motor performance in later life (Gallahue and Ozmun, 2005). The need for an efficient FMS testing in Physical Education was recognized. The aim of this paper was to construct and validate a new FMS test for 8 year old children. Ninety-five 8 year old children were used for the testing. A total of 24 new FMS tasks were constructed and only the best representatives of movement areas entered into the final test product - FMS-POLYGON. The ICC showed high values for all 24 tasks (0.83-0.97) and the factorial analysis revealed the best representatives of each movement area that entered the FMS-POLYGON: tossing and catching the volleyball against a wall, running across obstacles, carrying the medicine balls, and straight running. The ICC for the FMS-POLYGON showed a very high result (0.98) and, therefore, confirmed the test's intra-rater reliability. Concurrent validity was tested with the use of the "Test of Gross Motor Development" (TGMD-2). Correlation analysis between the newly constructed FMS-POLYGON and the TGMD-2 revealed the coefficient of -0.82 which indicates a high correlation. In conclusion, the new test for FMS assessment proved to be a reliable and valid instrument for 8 year old children. Application of this test in schools is justified and could play an important factor in physical education and sport practice. Key pointsAll 21 newly constructed tasks demonstrated high intra-rater reliability (0.83-0.97) in FMS assessment. High reliability was also noted in the FMS-POLYGON test (0.98).A high correlation was found between the FMS-POLYGON and TGMD-2 which is a confirmation of the new test's concurrent validity.The research resolved the problem of long and detailed FMS assessment by adding a new dimension using quick and effective norm-referenced approach but also covering all the most important movement areas.New and validated test can be of great use

Hepatitis C: Treatment

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... Public Home » Hepatitis C » Hepatitis C Treatment Viral Hepatitis Menu Menu Viral Hepatitis Viral Hepatitis Home For ... Enter ZIP code here Enter ZIP code here Hepatitis C Treatment for Veterans and the Public Treatment ...

Peripheral Neuropathy and Agent Orange

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... Enter ZIP code here Enter ZIP code here Peripheral Neuropathy and Agent Orange VA presumes Veterans' early-onset ... 10 percent disabling by VA's rating regulations. About peripheral neuropathy Peripheral neuropathy is a condition of the peripheral ...

Self-assembly of a constitutional dynamic library of Cu(II) coordination polygons and reversible sorting by crystallization.

Science.gov (United States)

Rancan, Marzio; Tessarolo, Jacopo; Zanonato, Pier Luigi; Seraglia, Roberta; Quici, Silvio; Armelao, Lidia

2013-06-07

A small coordination constitutional dynamic library (CDL) is self-assembled from Cu(2+) ions and the ortho bis-(3-acetylacetone)benzene ligand. Two coordination polygons, a rhomboid and a triangle, establish a dynamic equilibrium. Quantitative sorting of the rhomboidal polygon is reversibly obtained by crystallization. Thermodynamic and kinetic aspects ruling the CDL system have been elucidated.

Extreme Population Differences in the Human Zinc Transporter ZIP4 (SLC39A4) Are Explained by Positive Selection in Sub-Saharan Africa

Science.gov (United States)

Pybus, Marc; Andrews, Glen K.; Lalueza-Fox, Carles; Comas, David; Sekler, Israel; de la Rasilla, Marco; Rosas, Antonio; Stoneking, Mark; Valverde, Miguel A.; Vicente, Rubén; Bosch, Elena

2014-01-01

Extreme differences in allele frequency between West Africans and Eurasians were observed for a leucine-to-valine substitution (Leu372Val) in the human intestinal zinc uptake transporter, ZIP4, yet no further evidence was found for a selective sweep around the ZIP4 gene (SLC39A4). By interrogating allele frequencies in more than 100 diverse human populations and resequencing Neanderthal DNA, we confirmed the ancestral state of this locus and found a strong geographical gradient for the derived allele (Val372), with near fixation in West Africa. In extensive coalescent simulations, we show that the extreme differences in allele frequency, yet absence of a classical sweep signature, can be explained by the effect of a local recombination hotspot, together with directional selection favoring the Val372 allele in Sub-Saharan Africans. The possible functional effect of the Leu372Val substitution, together with two pathological mutations at the same codon (Leu372Pro and Leu372Arg) that cause acrodermatitis enteropathica (a disease phenotype characterized by extreme zinc deficiency), was investigated by transient overexpression of human ZIP4 protein in HeLa cells. Both acrodermatitis mutations cause absence of the ZIP4 transporter cell surface expression and nearly absent zinc uptake, while the Val372 variant displayed significantly reduced surface protein expression, reduced basal levels of intracellular zinc, and reduced zinc uptake in comparison with the Leu372 variant. We speculate that reduced zinc uptake by the ZIP4-derived Val372 isoform may act by starving certain pathogens of zinc, and hence may have been advantageous in Sub-Saharan Africa. Moreover, these functional results may indicate differences in zinc homeostasis among modern human populations with possible relevance for disease risk. PMID:24586184

Extreme population differences in the human zinc transporter ZIP4 (SLC39A4 are explained by positive selection in Sub-Saharan Africa.

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Johannes Engelken

2014-02-01

Full Text Available Extreme differences in allele frequency between West Africans and Eurasians were observed for a leucine-to-valine substitution (Leu372Val in the human intestinal zinc uptake transporter, ZIP4, yet no further evidence was found for a selective sweep around the ZIP4 gene (SLC39A4. By interrogating allele frequencies in more than 100 diverse human populations and resequencing Neanderthal DNA, we confirmed the ancestral state of this locus and found a strong geographical gradient for the derived allele (Val372, with near fixation in West Africa. In extensive coalescent simulations, we show that the extreme differences in allele frequency, yet absence of a classical sweep signature, can be explained by the effect of a local recombination hotspot, together with directional selection favoring the Val372 allele in Sub-Saharan Africans. The possible functional effect of the Leu372Val substitution, together with two pathological mutations at the same codon (Leu372Pro and Leu372Arg that cause acrodermatitis enteropathica (a disease phenotype characterized by extreme zinc deficiency, was investigated by transient overexpression of human ZIP4 protein in HeLa cells. Both acrodermatitis mutations cause absence of the ZIP4 transporter cell surface expression and nearly absent zinc uptake, while the Val372 variant displayed significantly reduced surface protein expression, reduced basal levels of intracellular zinc, and reduced zinc uptake in comparison with the Leu372 variant. We speculate that reduced zinc uptake by the ZIP4-derived Val372 isoform may act by starving certain pathogens of zinc, and hence may have been advantageous in Sub-Saharan Africa. Moreover, these functional results may indicate differences in zinc homeostasis among modern human populations with possible relevance for disease risk.

Assessing Differences in the Availability of Opioid Addiction Therapy Options: Rural Versus Urban and American Indian Reservation Versus Nonreservation.

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Hirchak, Katherine A; Murphy, Sean M

2017-01-01

Opioid misuse is a large public health problem in the United States. Residents of rural areas and American Indian (AI) reservation/trust lands represent traditionally underserved populations with regard to substance-use disorder therapy. Assess differences in the number of opioid agonist therapy (OAT) facilities and physicians with Drug Addiction Treatment Act (DATA) waivers for rural versus urban, and AI reservation/trust land versus non-AI reservation/trust land areas in Washington State. The unit of analysis was the ZIP code. The dependent variables were the number of OAT facilities and DATA-waivered physicians in a region per 10,000 residents aged 18-64 in a ZIP code. A region was defined as a ZIP code and its contiguous ZIP codes. The independent variables were binary measures of whether a ZIP code was classified as rural versus urban, or AI reservation/trust land versus non-AI reservation/trust land. Zero-inflated negative binomial regressions with robust standard errors were estimated. The number of OAT clinics in a region per 10,000 ZIP-code residents was significantly lower in rural versus urban areas (P = .002). This did not differ significantly between AI reservation/trust land and non-AI reservation/trust land areas (P = .79). DATA-waivered physicians in a region per 10,000 ZIP-code residents was not significantly different between rural and urban (P = .08), or AI reservation/trust land versus non-AI reservation/trust land areas (P = .21). It appears that the potential for Washington State residents of rural and AI reservation areas to receive OAT is similar to that of residents outside of those areas; however, difficulties in accessing therapy may remain, highlighting the importance of expanding health care insurance and providing support for DATA-waivered physicians. © 2016 National Rural Health Association.

Assessing Differences in the Availability of Opioid Addiction Therapy Options: Rural Versus Urban and American Indian Reservation Versus Non-Reservation

Science.gov (United States)

Hirchak, Katherine A.; Murphy, Sean M.

2017-01-01

Background Opioid misuse is a large public health problem in the United States. Residents of rural areas and American Indian (AI) reservation/trust lands represent traditionally underserved populations with regard to substance-use-disorder therapy. Purpose Assess differences in the number of opioid agonist therapy (OAT) facilities and physicians with Drug Addiction Treatment Act (DATA) waivers for rural versus urban, and AI reservation/trust land versus non-AI reservation/trust land areas in Washington State. Methods The unit of analysis was the zip code. The dependent variables were the number of OAT facilities and DATA-waivered physicians in a region per 10,000 residents aged 18–64 in a zip code. A region was defined as a zip code and its contiguous zip codes. The independent variables were binary measures of whether a zip code was classified as rural versus urban, or AI reservation/trust land versus non-AI reservation/trust land. Zero-inflated negative binomial regressions with robust standard errors were estimated. Results The number of OAT clinics in a region per 10,000 zip-code residents was significantly lower in rural versus urban areas (P = .002). This did not differ significantly between AI reservation/trust land and non-AI reservation/trust land areas (P = .79). DATA-waivered physicians in a region per 10,000 zip-code residents was not significantly different between rural and urban (P = .08), or AI reservation/trust land versus non-AI reservation/trust land areas (P = .21). Conclusions It appears that the potential for Washington State residents of rural and AI reservation areas to receive OAT is similar to that of residents outside of those areas; however, difficulties in accessing therapy may remain, highlighting the importance of expanding health care insurance and providing support for DATA-waivered physicians. PMID:26987797

National substance use patterns on Twitter.

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Hsien-Wen Meng

Full Text Available We examined openly shared substance-related tweets to estimate prevalent sentiment around substance use and identify popular substance use activities. Additionally, we investigated associations between substance-related tweets and business characteristics and demographics at the zip code level.A total of 79,848,992 tweets were collected from 48 states in the continental United States from April 2015-March 2016 through the Twitter API, of which 688,757 were identified as being related to substance use. We implemented a machine learning algorithm (maximum entropy text classifier to estimate sentiment score for each tweet. Zip code level summaries of substance use tweets were created and merged with the 2013 Zip Code Business Patterns and 2010 US Census Data.Quality control analyses with a random subset of tweets yielded excellent agreement rates between computer generated and manually generated labels: 97%, 88%, 86%, 75% for underage engagement in substance use, alcohol, drug, and smoking tweets, respectively. Overall, 34.1% of all substance-related tweets were classified as happy. Alcohol was the most frequently tweeted substance, followed by marijuana. Regression results suggested more convenience stores in a zip code were associated with higher percentages of tweets about alcohol. Larger zip code population size and higher percentages of African Americans and Hispanics were associated with fewer tweets about substance use and underage engagement. Zip code economic disadvantage was associated with fewer alcohol tweets but more drug tweets.The patterns in substance use mentions on Twitter differ by zip code economic and demographic characteristics. Online discussions have great potential to glorify and normalize risky behaviors. Health promotion and underage substance prevention efforts may include interactive social media campaigns to counter the social modeling of risky behaviors.

Uncertainty assessment of a polygon database of soil organic carbon for greenhouse gas reporting in Canada’s Arctic and sub-arctic

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M.F. Hossain

2014-08-01

Full Text Available Canada’s Arctic and sub-arctic consist 46% of Canada’s landmass and contain 45% of the total soil organic carbon (SOC. Pronounced climate warming and increasing human disturbances could induce the release of this SOC to the atmosphere as greenhouse gases. Canada is committed to estimating and reporting the greenhouse gases emissions and removals induced by land use change in the Arctic and sub-arctic. To assess the uncertainty of the estimate, we compiled a site-measured SOC database for Canada’s north, and used it to compare with a polygon database, that will be used for estimating SOC for the UNFCCC reporting. In 10 polygons where 3 or more measured sites were well located in each polygon, the site-averaged SOC content agreed with the polygon data within ±33% for the top 30 cm and within ±50% for the top 1 m soil. If we directly compared the SOC of the 382 measured sites with the polygon mean SOC, there was poor agreement: The relative error was less than 50% at 40% of the sites, and less than 100% at 68% of the sites. The relative errors were more than 400% at 10% of the sites. These comparisons indicate that the polygon database is too coarse to represent the SOC conditions for individual sites. The difference is close to the uncertainty range for reporting. The spatial database could be improved by relating site and polygon SOC data with more easily observable surface features that can be identified and derived from remote sensing imagery.

QUADRATIC SERENDIPITY FINITE ELEMENTS ON POLYGONS USING GENERALIZED BARYCENTRIC COORDINATES.

Science.gov (United States)

Rand, Alexander; Gillette, Andrew; Bajaj, Chandrajit

2014-01-01

We introduce a finite element construction for use on the class of convex, planar polygons and show it obtains a quadratic error convergence estimate. On a convex n -gon, our construction produces 2 n basis functions, associated in a Lagrange-like fashion to each vertex and each edge midpoint, by transforming and combining a set of n ( n + 1)/2 basis functions known to obtain quadratic convergence. The technique broadens the scope of the so-called 'serendipity' elements, previously studied only for quadrilateral and regular hexahedral meshes, by employing the theory of generalized barycentric coordinates. Uniform a priori error estimates are established over the class of convex quadrilaterals with bounded aspect ratio as well as over the class of convex planar polygons satisfying additional shape regularity conditions to exclude large interior angles and short edges. Numerical evidence is provided on a trapezoidal quadrilateral mesh, previously not amenable to serendipity constructions, and applications to adaptive meshing are discussed.

A simple algorithm for calculating the area of an arbitrary polygon

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K.R. Wijeweera

2017-06-01

Full Text Available Computing the area of an arbitrary polygon is a popular problem in pure mathematics. The two methods used are Shoelace Method (SM and Orthogonal Trapezoids Method (OTM. In OTM, the polygon is partitioned into trapezoids by drawing either horizontal or vertical lines through its vertices. The area of each trapezoid is computed and the resultant areas are added up. In SM, a formula which is a generalization of Green’s Theorem for the discrete case is used. The most of the available systems is based on SM. Since an algorithm for OTM is not available in literature, this paper proposes an algorithm for OTM along with efficient implementation. Conversion of a pure mathematical method into an efficient computer program is not straightforward. In order to reduce the run time, minimal computation needs to be achieved. Handling of indeterminate forms and special cases separately can support this. On the other hand, precision error should also be avoided. Salient feature of the proposed algorithm is that it successfully handles these situations achieving minimum run time. Experimental results of the proposed method are compared against that of the existing algorithm. However, the proposed algorithm suggests a way to partition a polygon into orthogonal trapezoids which is not an easy task. Additionally, the proposed algorithm uses only basic mathematical concepts while the Green’s theorem uses complicated mathematical concepts. The proposed algorithm can be used when the simplicity is important than the speed.

Gene expression of the zinc transporter ZIP14 (SLC39a14) is affected by weight loss and metabolic status and associates with PPARγ in human adipose tissue and 3T3-L1 pre-adipocytes

DEFF Research Database (Denmark)

Juul, Trine Maxel; Smidt, Kamille; Larsen, Agnete

2015-01-01

of clinical importance, including body mass index, triglyceride, and insulin resistance, were inversely correlated with ZIP14. During early adipogensis an up-regulation of ZIP14 gene expression was found. PPARγ gene expression was positively correlated with the ZIP14 gene expression in both adipose tissue......BACKGROUND: The expansion and function of adipose tissue are important during the development of insulin resistance and inflammation in obesity. Zinc dyshomeostasis is common in obese individuals. In the liver, zinc influx transporter ZIP14, affects proliferation and glucose metabolism but the role...

Explicitly represented polygon wall boundary model for the explicit MPS method

Science.gov (United States)

Mitsume, Naoto; Yoshimura, Shinobu; Murotani, Kohei; Yamada, Tomonori

2015-05-01

This study presents an accurate and robust boundary model, the explicitly represented polygon (ERP) wall boundary model, to treat arbitrarily shaped wall boundaries in the explicit moving particle simulation (E-MPS) method, which is a mesh-free particle method for strong form partial differential equations. The ERP model expresses wall boundaries as polygons, which are explicitly represented without using the distance function. These are derived so that for viscous fluids, and with less computational cost, they satisfy the Neumann boundary condition for the pressure and the slip/no-slip condition on the wall surface. The proposed model is verified and validated by comparing computed results with the theoretical solution, results obtained by other models, and experimental results. Two simulations with complex boundary movements are conducted to demonstrate the applicability of the E-MPS method to the ERP model.

Capsella rubella TGA4, a bZIP transcription factor, causes delayed flowering in Arabidopsis thaliana

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Li Maofu

2016-01-01

Full Text Available Flowering time is usually regulated by many environmental factors and endogenous signals. TGA family members are bZIP transcription factors that bind to the octopine synthase element, which has been closely linked to defense/stress responses. Most TGA factors interact with non-expressor of PR1 (NPR1 and plant defense responses are strengthened by this interaction. TGA1and TGA4factors bind to NPR1 only in salicylic acid (SA-induced leaves, suggesting that TGA4 has another function during plant development. Here, we isolated a bZIP transcription factor gene, TGA4, from Capsella rubella. TGA4transcripts were detected in most tissues, with high expression in leaves, low expression in stems and flowering buds, and undetectable in siliques. CruTGA4was over expressed in Arabidopsis thaliana wild typeCol-0 plants. Flowering time and total leaf number in the transgenic plants showed that overexpression of CruTGA4could delay flowering in A. thaliana. Our findings suggest that TGA4 may act as flowering regulator that controls plant flowering.

PTSD in Children and Teens

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... for PTSD » Public » PTSD in Children and Teens PTSD: National Center for PTSD Menu Menu PTSD PTSD Home For the Public ... Enter ZIP code here Enter ZIP code here PTSD in Children and Teens Public This section is ...

PTSD Treatment Programs in the U.S. Department of Veterans Affairs

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... Programs in the U.S. Department of Veterans Affairs PTSD: National Center for PTSD Menu Menu PTSD PTSD Home For the Public ... Enter ZIP code here Enter ZIP code here PTSD Treatment Programs in the U.S. Department of Veterans ...

PTSD and Problems with Alcohol Use

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... PTSD » Public » PTSD and Problems with Alcohol Use PTSD: National Center for PTSD Menu Menu PTSD PTSD Home For the Public ... Enter ZIP code here Enter ZIP code here PTSD and Problems with Alcohol Use Public This section ...

PTSD: National Center for PTSD

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The Effect of Inquiry-Based Explorations in a Dynamic Geometry Environment on Sixth Grade Students' Achievements in Polygons

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Erbas, Ayhan Kursat; Yenmez, Arzu Aydogan

2011-01-01

The purpose of this study was to investigate the effects of using a dynamic geometry environment (DGE) together with inquiry-based explorations on the sixth grade students' achievements in polygons and congruency and similarity of polygons. Two groups of sixth grade students were selected for this study: an experimental group composed of 66…

Development of a pregnant woman phantom using polygonal mesh, for dosimetric evaluations

Energy Technology Data Exchange (ETDEWEB)

Cabral, Manuela O.M.; Vieira, Jose W., E-mail: manuela.omc@gmail.com [Universidade Federal de Pernambuco (DEN/UFPE), Recife, PE (Brazil). Departamento de Energia Nuclear; Leal Neto, Viriato, E-mail: viriatoleal@yahoo.com.br [Instituto Federal de Educacao, Ciencia e Tecnologia de Pernambuco (IFPE), Recife, PE (Brazil); Lima, Fernando R.A., E-mail: falima@cnen.gov.br [Centro Regional de Ciencias Nucleares do Nordeste (CRCN-NE/CNEN-PE), Recife, PE (Brazil)

2014-07-01

Due to the embryo/fetus radiosensitivity the accurate estimation of the absorbed dose distribution in the abdominal area is an additional problem caused by the exposure of pregnant women to ionizing radiation in medical applications. This paper reports the construction and insertion of a fetal representation in a female geometry by means of 3D modeling techniques. In order to characterize an ECM the Grupo de Dosimetria Numerica (GDN) is using, mainly, simulators emitting gamma sources and voxel phantoms coupled to a MC code. The phantoms are predominantly constructed from stacks of magnetic resonance images (MRI), computed tomography (CT) (obtained from scans of real patients) or from 3D modeling techniques. Due to the difficulty of obtaining medical images of pregnant women, 3D objects in several formats (.obj, .max, .blend, etc.) were acquired for anatomical representation of a non-pregnant adult. To construct a fetal representation, the 3D modeling technique called Poly Modeling (polygon mesh) was used inside of the software Autodesk 3ds Max 2014 (free student version). Information about the radiosensibility of organs included in the abdominal area will be used to fit and use the pregnant phantom in numerical dosimetry. For this, the phantom will be voxelized and the masses of organs of interest will be adjusted according to data provided by International Commission on Radiological Protection (ICRP). Finally, the phantom will be coupled to a MC code creating a MCE that will serve as base for the construction of several other models involving pregnant women submitted to ionizing radiation. (author)

Development of a pregnant woman phantom using polygonal mesh, for dosimetric evaluations

International Nuclear Information System (INIS)

Cabral, Manuela O.M.; Vieira, Jose W.; Lima, Fernando R.A.

2014-01-01

Due to the embryo/fetus radiosensitivity the accurate estimation of the absorbed dose distribution in the abdominal area is an additional problem caused by the exposure of pregnant women to ionizing radiation in medical applications. This paper reports the construction and insertion of a fetal representation in a female geometry by means of 3D modeling techniques. In order to characterize an ECM the Grupo de Dosimetria Numerica (GDN) is using, mainly, simulators emitting gamma sources and voxel phantoms coupled to a MC code. The phantoms are predominantly constructed from stacks of magnetic resonance images (MRI), computed tomography (CT) (obtained from scans of real patients) or from 3D modeling techniques. Due to the difficulty of obtaining medical images of pregnant women, 3D objects in several formats (.obj, .max, .blend, etc.) were acquired for anatomical representation of a non-pregnant adult. To construct a fetal representation, the 3D modeling technique called Poly Modeling (polygon mesh) was used inside of the software Autodesk 3ds Max 2014 (free student version). Information about the radiosensibility of organs included in the abdominal area will be used to fit and use the pregnant phantom in numerical dosimetry. For this, the phantom will be voxelized and the masses of organs of interest will be adjusted according to data provided by International Commission on Radiological Protection (ICRP). Finally, the phantom will be coupled to a MC code creating a MCE that will serve as base for the construction of several other models involving pregnant women submitted to ionizing radiation. (author)

Mixed FEM for Second Order Elliptic Problems on Polygonal Meshes with BEM-Based Spaces

KAUST Repository

Efendiev, Yalchin

2014-01-01

We present a Boundary Element Method (BEM)-based FEM for mixed formulations of second order elliptic problems in two dimensions. The challenge, we would like to address, is a proper construction of H(div)-conforming vector valued trial functions on arbitrary polygonal partitions of the domain. The proposed construction generates trial functions on polygonal elements which inherit some of the properties of the unknown solution. In the numerical realization, the relevant local problems are treated by means of boundary integral formulations. We test the accuracy of the method on two model problems. © 2014 Springer-Verlag.

Cook Inlet and Kenai Peninsula, Alaska ESI: HYDRO (Hydrography Lines and Polygons)

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National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for Cook Inlet...

POLYGON - A NEW FUNDAMENTAL MOVEMENT SKILLS TEST FOR 8 YEAR OLD CHILDREN: CONSTRUCTION AND VALIDATION

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Frane Zuvela

2011-03-01

Full Text Available Inadequately adopted fundamental movement skills (FMS in early childhood may have a negative impact on the motor performance in later life (Gallahue and Ozmun, 2005. The need for an efficient FMS testing in Physical Education was recognized. The aim of this paper was to construct and validate a new FMS test for 8 year old children. Ninety-five 8 year old children were used for the testing. A total of 24 new FMS tasks were constructed and only the best representatives of movement areas entered into the final test product - FMS-POLYGON. The ICC showed high values for all 24 tasks (0.83-0.97 and the factorial analysis revealed the best representatives of each movement area that entered the FMS-POLYGON: tossing and catching the volleyball against a wall, running across obstacles, carrying the medicine balls, and straight running. The ICC for the FMS-POLYGON showed a very high result (0.98 and, therefore, confirmed the test's intra-rater reliability. Concurrent validity was tested with the use of the "Test of Gross Motor Development" (TGMD-2. Correlation analysis between the newly constructed FMS-POLYGON and the TGMD-2 revealed the coefficient of -0.82 which indicates a high correlation. In conclusion, the new test for FMS assessment proved to be a reliable and valid instrument for 8 year old children. Application of this test in schools is justified and could play an important factor in physical education and sport practice.

Guam and the Northern Mariana Islands ESI: M_MAMMAL (Marine Mammal Polygons)

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National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for dolphins in Guam and the Northern Mariana Islands. Vector polygons in this data set represent marine...

Guam and the Northern Mariana Islands ESI: HYDRO (Hydrography Lines and Polygons)

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National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector lines and polygons representing coastal hydrography used in the creation of the Environmental Sensitivity Index (ESI) for Guam and the...

The membrane tethered transcription factor EcbZIP17 from finger millet promotes plant growth and enhances tolerance to abiotic stresses.

Science.gov (United States)

Ramakrishna, Chopperla; Singh, Sonam; Raghavendrarao, Sangala; Padaria, Jasdeep C; Mohanty, Sasmita; Sharma, Tilak Raj; Solanke, Amolkumar U

2018-02-01

The occurrence of various stresses, as the outcome of global climate change, results in the yield losses of crop plants. Prospecting of genes in stress tolerant plant species may help to protect and improve their agronomic performance. Finger millet (Eleusine coracana L.) is a valuable source of superior genes and alleles for stress tolerance. In this study, we isolated a novel endoplasmic reticulum (ER) membrane tethered bZIP transcription factor from finger millet, EcbZIP17. Transgenic tobacco plants overexpressing this gene showed better vegetative growth and seed yield compared with wild type (WT) plants under optimal growth conditions and confirmed upregulation of brassinosteroid signalling genes. Under various abiotic stresses, such as 250 mM NaCl, 10% PEG6000, 400 mM mannitol, water withdrawal, and heat stress, the transgenic plants showed higher germination rate, biomass, primary and secondary root formation, and recovery rate, compared with WT plants. The transgenic plants exposed to an ER stress inducer resulted in greater leaf diameter and plant height as well as higher expression of the ER stress-responsive genes BiP, PDIL, and CRT1. Overall, our results indicated that EcbZIP17 improves plant growth at optimal conditions through brassinosteroid signalling and provide tolerance to various environmental stresses via ER signalling pathways.

Precise algorithm to generate random sequential adsorption of hard polygons at saturation

Science.gov (United States)

Zhang, G.

2018-04-01

Random sequential adsorption (RSA) is a time-dependent packing process, in which particles of certain shapes are randomly and sequentially placed into an empty space without overlap. In the infinite-time limit, the density approaches a "saturation" limit. Although this limit has attracted particular research interest, the majority of past studies could only probe this limit by extrapolation. We have previously found an algorithm to reach this limit using finite computational time for spherical particles and could thus determine the saturation density of spheres with high accuracy. In this paper, we generalize this algorithm to generate saturated RSA packings of two-dimensional polygons. We also calculate the saturation density for regular polygons of three to ten sides and obtain results that are consistent with previous, extrapolation-based studies.

Actively Q-switched laser with novel Nd:YAG/YAG polygonal active-mirror

Science.gov (United States)

Lang, Ye; Chen, Yanzhong; Ge, Wenqi; He, Jianguo; Zhang, Hongbo; Liao, Lifen; Xin, Jianguo; Zhang, Jian; Fan, Zhongwei

2018-03-01

In this work, we demonstrate an efficient actively Q-switched laser based on a novel crystal Nd:YAG/YAG polygonal active mirror. A passively cooled crystal Nd:YAG/YAG polygonal active mirror with an end pump scheme was used as the gain medium. For the overlap between the TEM00 laser mode and large gain profile, a cavity was carefully designed with a large fundamental mode volume. With a maximum absorbed power of 3.1 W, a 685 mW average output power with a pulse repetition of 5 kHz was attained, and the corresponding optical-optical and slope efficiency were 22.1% and 27.7%, respectively. The pulse width was 133.9 ns. The beam quality (M 2) was 1.561 in the horizontal direction and 1.261 in the vertical direction.

Polygons, Pillars and Pavilions: Discovering Connections between Geometry and Architecture

Science.gov (United States)

Madden, Sean Patrick

2017-01-01

Crowning the second semester of geometry, taught within a Catholic middle school, the author's students explored connections between the geometry of regular polygons and architecture of local buildings. They went on to explore how these principles apply famous buildings around the world such as the monuments of Washington, D.C. and the elliptical…

(2+1) gravity for higher genus in the polygon model

NARCIS (Netherlands)

Kádár, Zoltán; Loll, R.

2004-01-01

We construct explicitly a (12g − 12)-dimensional space P of unconstrained and independent initial data for ’t Hooft’s polygon model of (2+1) gravity for vacuum spacetimes with compact genus-g spacelike slices, for any g ≥ 2. Our method relies on interpreting the boost parameters of the gluing

Radon in homes of the Portland, Oregon Area: Radon data from local radon testing companies collected by CRM (Continuous Radon Measurement) machines

Science.gov (United States)

Whitney, H.; Lindsey, K.; Linde, T.; Burns, S. F.

2013-12-01

Students from the Department of Geology at Portland State University paired up with the Oregon Health Authority to better understand radon gas values in homes of the Portland metropolitan area. This study focuses on radon values collected by continuous radon measurement (CRM) machines, taken by local radon testing companies. The local companies participating in this study include Alpha Environmental Services, Inc., Cascade Radon, Environmental Works, The House Detectives, LLC, and Soil Solutions Environmental Services, Inc. In total, 2491 radon readings spanning across 77 zip codes were collected from local companies in the Portland metropolitan area. The maximum value, average value, percentage of homes greater than 4 pCi/L and total rank sum was calculated and used to determine the overall radon potential for each zip code (Burns et al., 1998). A list and four maps were produced showing the results from each category. Out of the total records, 24 zip codes resulted in high radon potential and the average reading for the entire Portland Metropolitan area was 3.7 pCi/L. High potential zip codes are thought to be a result of sand and gravel (Missoula Flood deposits) and faults present in the subsurface. The CRM data was compared with both long-term and short-term data provided by the Oregon Health Authority to validate radon potentials in each zip code. If a home is located in a zip code with high or moderate radon potential across two types of data sets, it is recommended that those homes be tested for radon gas.

Cook Inlet and Kenai Peninsula, Alaska ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for marine mammals in Cook Inlet and Kenai Peninsula, Alaska. Vector polygons in this data set represent locations of...

Abandoned Uranium Mine (AUM) Region Polygons, Navajo Nation, 2016, US EPA Region 9

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U.S. Environmental Protection Agency — This GIS dataset contains polygon features representing the boundaries of the six Abandoned Uranium Mines (AUM) Regions, including the: Central, Eastern, Northern,...

Rhode Island, Connecticut, New York, and New Jersey ESI: INDEX (Index Polygons)

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National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing the boundaries of the U.S. Geological Survey 1:24,000 topographic maps and other map and digital data boundaries...

Structural control of polygonal cracks in La Pedriza del Manzanares (Madrid); Control estructural de agrietamientos poligonales en la Pedriza del Manzanares (Madrid)

Energy Technology Data Exchange (ETDEWEB)

Garcia-Rodriguez, M.; Aroztegui, J.; Lopez Portillo, H.

2015-07-01

Polygonal cracks represent a common way of modeling granite whose origin and evolution continues under study not even existing a systematization of these diverse structures. Some authors explain their origin by internal geo dynamic processes relating to movements of fracture planes in later stages of magmatic consolidation. Other authors attribute their formation and development to external factors related to climate regime. The great variety of polygonal cracks requires the use of a greater number of variables to define their different origins, the possible interrelations between external and internal factors, to explain the evolution of these structures and advance the classification of specific patterns. This work aims to contribute to systematize the mechanisms involved in the development of polygonal cracks. For that only polygonal cracks formed on flat vertical or sub vertical fractures are studied. In particular relations are established between the presence of polygonal cracks with: the fracturing network, height of appearance, angle and tilt of the wall, plaque morphology and depth of incision of the perimeter cracks. Moreover it establishes relationships between internal geo dynamic processes and external weathering processes. (Author)

Engaging student expeditionary units to land work at aerospace polygons

Directory of Open Access Journals (Sweden)

Ирина Жемерова

2016-10-01

Full Text Available To organize the aerospace polygon it is necessary to conduct a large number of measurement and descriptive works. First and foremost is working with the fund and cartographic material. The map of the landfill shows the most important objects and phenomena: quarries, sinkholes, deep ravines, industrial, residential and protected areas. Organization of the aerospace polygon operation involves large labour costs. To train professionals on the ground research of the earth’s cover remote sensing, we have organized a permanent student expedition. Prior to the start of work, students listen to a series of introductory lectures on remote sensing, principles of ground work, methods of statistical evaluation, basic methods of data collection and processing. This article covers one direction of work - collecting and processing of phytometric data of crops and steppe vegetation in the Streletskaya steppe in the Central Chernozem nature reserve. The work is carried out on the test area of Kursk aerospace polygon, organized on the basis of Kursk biospheric station of the Institute of Geography RAS. A generally accepted method of test platforms is used on the routes. The results of measurements and observations are recorded in a field book. Species diversity, plant height, projective cover and crops density are determined on the sample area by the instrumental and visual methods. The rest phytometric indexes are calculated in laboratory conditions. The students can use the resulting material when writing articles, course and degree works. At the site, students acquire skills of working in field conditions with natural objects, collecting and processing of information by various methods, expanding understanding of the need and importance of the earth surface study by remote sensing methods.

Sensitivity of Coastal Environments and Wildlife to Spilled Oil: Mississippi: WETLANDS (Wetland Polygons)

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National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vector polygons representing coastal wetlands classified according to the Environmental Sensitivity Index (ESI) classification system for...

Transit Traffic Analysis Zone Delineating Method Based on Thiessen Polygon

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Shuwei Wang

2014-04-01

Full Text Available A green transportation system composed of transit, busses and bicycles could be a significant in alleviating traffic congestion. However, the inaccuracy of current transit ridership forecasting methods is imposing a negative impact on the development of urban transit systems. Traffic Analysis Zone (TAZ delineating is a fundamental and essential step in ridership forecasting, existing delineating method in four-step models have some problems in reflecting the travel characteristics of urban transit. This paper aims to come up with a Transit Traffic Analysis Zone delineation method as supplement of traditional TAZs in transit service analysis. The deficiencies of current TAZ delineating methods were analyzed, and the requirements of Transit Traffic Analysis Zone (TTAZ were summarized. Considering these requirements, Thiessen Polygon was introduced into TTAZ delineating. In order to validate its feasibility, Beijing was then taken as an example to delineate TTAZs, followed by a spatial analysis of office buildings within a TTAZ and transit station departure passengers. Analysis result shows that the TTAZs based on Thiessen polygon could reflect the transit travel characteristic and is of in-depth research value.

Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.

Science.gov (United States)

González-Grandío, Eduardo; Pajoro, Alice; Franco-Zorrilla, José M; Tarancón, Carlos; Immink, Richard G H; Cubas, Pilar

2017-01-10

Shoot-branching patterns determine key aspects of plant life and are important targets for crop breeding. However, we are still largely ignorant of the genetic networks controlling locally the most important decision during branch development: whether the axillary bud, or branch primordium, grows out to give a lateral shoot or remains dormant. Here we show that, inside the buds, the TEOSINTE BRANCHED1, CYCLOIDEA, PCF (TCP) transcription factor BRANCHED1 (BRC1) binds to and positively regulates the transcription of three related Homeodomain leucine zipper protein (HD-ZIP)-encoding genes: HOMEOBOX PROTEIN 21 (HB21), HOMEOBOX PROTEIN 40 (HB40), and HOMEOBOX PROTEIN 53 (HB53). These three genes, together with BRC1, enhance 9-CIS-EPOXICAROTENOID DIOXIGENASE 3 (NCED3) expression, lead to abscisic acid accumulation, and trigger hormone response, thus causing suppression of bud development. This TCP/HD-ZIP genetic module seems to be conserved in dicot and monocotyledonous species to prevent branching under light-limiting conditions.

Open-source tool for automatic import of coded surveying data to multiple vector layers in GIS environment

Directory of Open Access Journals (Sweden)

Eva Stopková

2016-12-01

Full Text Available This paper deals with a tool that enables import of the coded data in a singletext file to more than one vector layers (including attribute tables, together withautomatic drawing of line and polygon objects and with optional conversion toCAD. Python script v.in.survey is available as an add-on for open-source softwareGRASS GIS (GRASS Development Team. The paper describes a case study basedon surveying at the archaeological mission at Tell-el Retaba (Egypt. Advantagesof the tool (e.g. significant optimization of surveying work and its limits (demandson keeping conventions for the points’ names coding are discussed here as well.Possibilities of future development are suggested (e.g. generalization of points’names coding or more complex attribute table creation.

Effects of Unsaturated Microtopography on Nitrate Concentrations in Tundra Ecosystems: Examples from Polygonal Terrain and Degraded Peat Plateaus

Science.gov (United States)

Heikoop, J. M.; Arendt, C. A.; Newman, B. D.; Charsley-Groffman, L.; Perkins, G.; Wilson, C. J.; Wullschleger, S.

2017-12-01

Under the auspices of the Next Generation Ecosystem Experiment - Arctic, we have been studying hydrogeochemical signals in Alaskan tundra ecosystems underlain by continuous permafrost (Barrow Environmental Observatory (BEO)) and discontinuous permafrost (Seward Peninsula). The Barrow site comprises largely saturated tundra associated with the low gradient Arctic Coastal Plain. Polygonal microtopography, however, can result in slightly raised areas that are unsaturated. In these areas we have previously demonstrated production and accumulation of nitrate, which, based on nitrate isotopic analysis, derives from microbial degradation. Our Seward Peninsula site is located in a much steeper and generally well-drained watershed. In lower-gradient areas at the top and bottom of the watershed, however, the tundra is generally saturated, likely because of the presence of underlying discontinuous permafrost inhibiting infiltration. These settings also contain microtopographic features, though in the form of degraded peat plateaus surrounded by wet graminoid sag ponds. Despite being very different microtopographic features in a very different setting with distinct vegetation, qualitatively similar nitrate accumulation patterns as seen in polygonal terrain were observed. The highest nitrate pore water concentration observed in an unsaturated peat plateau was approximately 5 mg/L, whereas subsurface pore water concentrations in surrounding sag ponds were generally below the limit of detection. Nitrate isotopes indicate this nitrate results from microbial mineralization and nitrification based on comparison to the nitrate isotopic composition of reduced nitrogen sources in the environment and the oxygen isotope composition of site pore water. Nitrate concentrations were most similar to those found in low-center polygon rims and flat-centered polygon centers at the BEO, but were significantly lower than the maximum concentrations seen in the highest and driest polygonal features

AMCO Off-Site Air Monitoring Polygons, Oakland CA, 2017, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — This feature class was developed to support the AMCO Chemical Superfund Site air monitoring process and depicts a single polygon layer, Off-Site Air Monitors,...

Rotational Fourier tracking of diffusing polygons.

Science.gov (United States)

Mayoral, Kenny; Kennair, Terry P; Zhu, Xiaoming; Milazzo, James; Ngo, Kathy; Fryd, Michael M; Mason, Thomas G

2011-11-01

We use optical microscopy to measure the rotational Brownian motion of polygonal platelets that are dispersed in a liquid and confined by depletion attractions near a wall. The depletion attraction inhibits out-of-plane translational and rotational Brownian fluctuations, thereby facilitating in-plane imaging and video analysis. By taking fast Fourier transforms (FFTs) of the images and analyzing the angular position of rays in the FFTs, we determine an isolated particle's rotational trajectory, independent of its position. The measured in-plane rotational diffusion coefficients are significantly smaller than estimates for the bulk; this difference is likely due to the close proximity of the particles to the wall arising from the depletion attraction.

Major zircon megacryst suites of the Indo-Pacific lithospheric margin (ZIP) and their petrogenetic and regional implications

Science.gov (United States)

Sutherland, Lin; Graham, Ian; Yaxley, Gregory; Armstrong, Richard; Giuliani, Gaston; Hoskin, Paul; Nechaev, Victor; Woodhead, Jon

2016-04-01

Zircon megacrysts (± gem corundum) appear in basalt fields of Indo-Pacific origin over a 12,000 km zone (ZIP) along West Pacific continental margins. Age-dating, trace element, oxygen and hafnium isotope studies on representative zircons (East Australia-Asia) indicate diverse magmatic sources. The U-Pb (249 to 1 Ma) and zircon fission track (ZFT) ages (65 to 1 Ma) suggest thermal annealing during later basalt transport, with < 1 to 203 Ma gaps between the U-Pb and ZFT ages. Magmatic growth zonation and Zr/Hf ratios (0.01-0.02) suggest alkaline magmatic sources, while Ti—in—zircon thermometry suggests that most zircons crystallized within ranges between 550 and 830 °C. Chondrite-normalised multi-element plots show variable enrichment patterns, mostly without marked Eu depletion, indicating little plagioclase fractionation in source melts. Key elements and ratios matched against zircons from magmatic rocks suggest a range of ultramafic to felsic source melts. Zircon O-isotope ratios (δ18O in the range 4 to 11‰) and initial Hf isotope ratios (ɛHf in the range +2 to +14) encompass ranges for both mantle and crustal melts. Calculated Depleted Mantle (TDM 0.03-0.56 Ga) and Crustal Residence (0.20-1.02 Ga) model ages suggest several mantle events, continental break-ups (Rodinia and Gondwana) and convergent margin collisions left imprints in the zircon source melts. East Australian ZIP sites reflect prolonged intraplate magmatism (~85 Ma), often during times of fast-migrating lithosphere. In contrast, East Asian-Russian ZIP sites reflect later basaltic magmatism (<40 Ma), often linked to episodes of back-arc rifting and spreading, slow-migrating lithosphere and slab subduction.

Polygonal tundra geomorphological change in response to warming alters future CO2 and CH4 flux on the Barrow Peninsula.

Science.gov (United States)

Lara, Mark J; McGuire, A David; Euskirchen, Eugenie S; Tweedie, Craig E; Hinkel, Kenneth M; Skurikhin, Alexei N; Romanovsky, Vladimir E; Grosse, Guido; Bolton, W Robert; Genet, Helene

2015-04-01

The landscape of the Barrow Peninsula in northern Alaska is thought to have formed over centuries to millennia, and is now dominated by ice-wedge polygonal tundra that spans drained thaw-lake basins and interstitial tundra. In nearby tundra regions, studies have identified a rapid increase in thermokarst formation (i.e., pits) over recent decades in response to climate warming, facilitating changes in polygonal tundra geomorphology. We assessed the future impact of 100 years of tundra geomorphic change on peak growing season carbon exchange in response to: (i) landscape succession associated with the thaw-lake cycle; and (ii) low, moderate, and extreme scenarios of thermokarst pit formation (10%, 30%, and 50%) reported for Alaskan arctic tundra sites. We developed a 30 × 30 m resolution tundra geomorphology map (overall accuracy:75%; Kappa:0.69) for our ~1800 km² study area composed of ten classes; drained slope, high center polygon, flat-center polygon, low center polygon, coalescent low center polygon, polygon trough, meadow, ponds, rivers, and lakes, to determine their spatial distribution across the Barrow Peninsula. Land-atmosphere CO2 and CH4 flux data were collected for the summers of 2006-2010 at eighty-two sites near Barrow, across the mapped classes. The developed geomorphic map was used for the regional assessment of carbon flux. Results indicate (i) at present during peak growing season on the Barrow Peninsula, CO2 uptake occurs at -902.3 10(6) gC-CO2 day(-1) (uncertainty using 95% CI is between -438.3 and -1366 10(6) gC-CO2 day(-1)) and CH4 flux at 28.9 10(6) gC-CH4 day(-1) (uncertainty using 95% CI is between 12.9 and 44.9 10(6) gC-CH4 day(-1)), (ii) one century of future landscape change associated with the thaw-lake cycle only slightly alter CO2 and CH4 exchange, while (iii) moderate increases in thermokarst pits would strengthen both CO2 uptake (-166.9 10(6) gC-CO2 day(-1)) and CH4 flux (2.8 10(6) gC-CH4 day(-1)) with geomorphic change from low

Polygonal tundra geomorphological change in response to warming alters future CO2 and CH4 flux on the Barrow Peninsula

Science.gov (United States)

Lara, Mark J.; McGuire, A. David; Euskirchen, Eugénie S.; Tweedie, Craig E.; Hinkel, Kenneth M.; Skurikhin, Alexei N.; Romanovsky, Vladimir E.; Grosse, Guido; Bolton, W. Robert; Genet, Helene

2015-01-01

The landscape of the Barrow Peninsula in northern Alaska is thought to have formed over centuries to millennia, and is now dominated by ice-wedge polygonal tundra that spans drained thaw-lake basins and interstitial tundra. In nearby tundra regions, studies have identified a rapid increase in thermokarst formation (i.e., pits) over recent decades in response to climate warming, facilitating changes in polygonal tundra geomorphology. We assessed the future impact of 100 years of tundra geomorphic change on peak growing season carbon exchange in response to: (i) landscape succession associated with the thaw-lake cycle; and (ii) low, moderate, and extreme scenarios of thermokarst pit formation (10%, 30%, and 50%) reported for Alaskan arctic tundra sites. We developed a 30 × 30 m resolution tundra geomorphology map (overall accuracy:75%; Kappa:0.69) for our ~1800 km² study area composed of ten classes; drained slope, high center polygon, flat-center polygon, low center polygon, coalescent low center polygon, polygon trough, meadow, ponds, rivers, and lakes, to determine their spatial distribution across the Barrow Peninsula. Land-atmosphere CO2 and CH4 flux data were collected for the summers of 2006–2010 at eighty-two sites near Barrow, across the mapped classes. The developed geomorphic map was used for the regional assessment of carbon flux. Results indicate (i) at present during peak growing season on the Barrow Peninsula, CO2 uptake occurs at -902.3 106gC-CO2 day−1(uncertainty using 95% CI is between −438.3 and −1366 106gC-CO2 day−1) and CH4 flux at 28.9 106gC-CH4 day−1(uncertainty using 95% CI is between 12.9 and 44.9 106gC-CH4 day−1), (ii) one century of future landscape change associated with the thaw-lake cycle only slightly alter CO2 and CH4 exchange, while (iii) moderate increases in thermokarst pits would strengthen both CO2uptake (−166.9 106gC-CO2 day−1) and CH4 flux (2.8 106gC-CH4 day−1) with geomorphic change from

The Populus Class III HD ZIP, popREVOLUTA, influences cambium initiation and patterning of woody stems

Science.gov (United States)

Marcel Robischon; Juan Du; Eriko Miura; Andrew Groover

2011-01-01

The secondary growth of a woody stem requires the formation of a vascular cambium at an appropriate position and proper patterning of the vascular tissues derived from the cambium. Class III homeodomain-leucine zipper (HD ZIP) transcription factors have been implicated in polarity determination and patterning in lateral organs and primary vascular tissues and in the...

Sensitivity of Coastal Environments and Wildlife to Spilled Oil: Mississippi: INVERT (Invertebrate Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for marine, estuarine, and brackish water invertebrate species in Mississippi. Vector polygons in this data...

Identifying Factors Causing Variability in Greenhouse Gas (GHG) Fluxes in a Polygonal Tundra Landscape

Science.gov (United States)

Arora, B.; Wainwright, H. M.; Vaughn, L. S.; Curtis, J. B.; Torn, M. S.; Dafflon, B.; Hubbard, S. S.

2017-12-01

Greenhouse gas (GHG) flux variations in Arctic tundra environments are important to understand because of the vast amount of soil carbon stored in these regions and the potential of these regions to convert from a global carbon sink to a source under warmer conditions. Multiple factors potentially contribute to GHG flux variations observed in these environments, including snowmelt timing, growing season length, active layer thickness, water table variations, and temperature fluctuations. The objectives of this study are to investigate temporal variability in CO2 and CH4 fluxes at Barrow, AK over three successive growing seasons (2012-14) and to determine the factors influencing this variability using a novel entropy-based classification scheme. We analyzed soil, vegetation, and climate parameters as well as GHG fluxes at multiple locations within low-, flat- and high-centered polygons at Barrow, AK as part of the Next Generation Ecosystem Experiment (NGEE) Arctic project. Entropy results indicate that different environmental factors govern variability in GHG fluxes under different spatiotemporal settings. In particular, flat-centered polygons are more likely to become significant sources of CO2 during warm and dry years as opposed to high-centered polygons that contribute considerably to CO2 emissions during cold and wet years. In contrast, the highest CH4 emissions were always associated with low-centered polygons. Temporal variability in CO2 fluxes was primarily associated with factors affecting soil temperature and/or vegetation dynamics during early and late season periods. Temporal variability in CH4 fluxes was primarily associated with changes in vegetation cover and its covariability with primary controls such as seasonal thaw—rather than direct response to changes in soil moisture. Overall, entropy results document which factors became important under different spatiotemporal settings, thus providing clues concerning the manner in which ecosystem

BnaA.bZIP1 Negatively Regulates a Novel Small Peptide Gene, BnaC.SP6, Involved in Pollen Activity

Directory of Open Access Journals (Sweden)

Xuanpeng Wang

2017-12-01

Full Text Available Small peptides secreted to the extracellular matrix control many aspects of the plant’s physiological activities which were identified in Arabidopsis thaliana, called ATSPs. Here, we isolated and characterized the small peptide gene Bna.SP6 from Brassica napus. The BnaC.SP6 promoter was cloned and identified. Promoter deletion analysis suggested that the -447 to -375 and -210 to -135 regions are crucial for the silique septum and pollen expression of BnaC.SP6, respectively. Furthermore, the minimal promoter region of p158 (-210 to -52 was sufficient for driving gene expression specifically in pollen and highly conserved in Brassica species. In addition, BnaA.bZIP1 was predominantly expressed in anthers where BnaC.SP6 was also expressed, and was localized to the nuclei. BnaA.bZIP1 possessed transcriptional activation activity in yeast and protoplast system. It could specifically bind to the C-box in p158 in vitro, and negatively regulate p158 activity in vivo. BnaA.bZIP1 functions as a transcriptional repressor of BnaC.SP6 in pollen activity. These results provide novel insight into the transcriptional regulation of BnaC.SP6 in pollen activity and the pollen/anther-specific promoter regions of BnaC.SP6 may have their potential agricultural application for new male sterility line generation.

Stage-specific regulation of four HD-ZIP III transcription factors during polar pattern formation in Larix leptolepis somatic embryos.

Science.gov (United States)

Li, Shui-gen; Li, Wan-feng; Han, Su-ying; Yang, Wen-hua; Qi, Li-wang

2013-06-15

Polar auxin transport provides a developmental signal for cell fate specification during somatic embryogenesis. Some members of the HD-ZIP III transcription factors participate in regulation of auxin transport, but little is known about this regulation in somatic embryogenesis. Here, four HD-ZIP III homologues from Larix leptolepis were identified and designated LaHDZ31, 32, 33 and 34. The occurrence of a miR165/166 target sequence in all four cDNA sequences indicated that they might be targets of miR165/166. Identification of the cleavage products of LaHDZ31 and LaHDZ32 in vivo confirmed that they were regulated by miRNA. Their mRNA accumulation patterns during somatic embryogenesis and the effects of 1-N-naphthylphthalamic acid (NPA) on their transcript levels and somatic embryo maturation were investigated. The results showed that the four genes had higher transcript levels at mature stages than at the proliferation stage, and that NPA treatment down-regulated the mRNA abundance of LaHDZ31, 32 and 33 at cotyledonary embryo stages, but had no effect on the mRNA abundance of LaHDZ34. We concluded that these four members of Larix HD-ZIP III family might participate in polar auxin transport and the development of somatic embryos, providing new insights into the regulatory mechanisms of somatic embryogenesis. Copyright © 2013 Elsevier B.V. All rights reserved.

National Priorities List (NPL) Site Polygons, Region 9, 2014, US EPA Region 9

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U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

National Priorities List (NPL) Site Polygons, Region 9, 2013, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

Aleutian Islands Coastal Resources Inventory and Environmental Sensitivity Maps: MGT (Management Area Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains management area data for National Wildlife Refuges in the Aleutian Islands, Alaska. Vector polygons in this data set represent management...

Sensitivity of Coastal Environments and Wildlife to Spilled Oil: Mississippi: REPTILES (Reptile Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains sensitive biological resource data for sea turtles, estuarine turtles, and gopher tortoise in Mississippi. Vector polygons in this data set...

National Priorities List (NPL) Site Polygons, Region 9, 2015, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

National Priorities List (NPL) Site Polygons, Region 9, 2012, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

National Priorities List (NPL) Site Polygons, Region 9, 2010, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

National Priorities List (NPL) Site Polygons, Region 9, 2017, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — NPL site POLYGON locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup...

Range-efficient consistent sampling and locality-sensitive hashing for polygons

DEFF Research Database (Denmark)

Gudmundsson, Joachim; Pagh, Rasmus

2017-01-01

Locality-sensitive hashing (LSH) is a fundamental technique for similarity search and similarity estimation in high-dimensional spaces. The basic idea is that similar objects should produce hash collisions with probability significantly larger than objects with low similarity. We consider LSH for...... or union of a set of preprocessed polygons. Curiously, our consistent sampling method uses transformation to a geometric problem....

A feed-forward spiking model of shape-coding by IT cells

Directory of Open Access Journals (Sweden)

August eRomeo

2014-05-01

Full Text Available The ability to recognize a shape is linked to figure-ground organization. Cell preferences appear to be correlated across contrast-polarity reversals and mirror reversals of polygon displays, but not so much across figure-ground (FG reversals. Here we present a network structure which explains both shape-coding by IT cells and the suppression of responses to figure-ground reversed stimuli. In the model figure-ground discrimination is achieved much before shape discrimination, that is itself evidenced by the difference in the spiking onsets of a couple of cells selective for two image categories.

Dynamic Function Allocation in Fighter Cockpits.

Science.gov (United States)

1987-06-30

Ifapplicable) Sciences and Leadership IO USAFA/ DRL Sc. ADDRESS (City. State and ZIP Code) 7b. ADDRESS (City, State and ZIP Code) USAF Academy Colorado...the experimenter) was deploying DCH using a different strategy than the subject would have (Morris at al., 1984). That is, the *computer’s modelo of

Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice

NARCIS (Netherlands)

Zhang, S.; Kohlen, W.; Jiang, L.; Bouwmeester, H.J.; Meijer, A.H.; Schluepmann, H.; Liu, C.M.; Ouwerkerk, P.B.F.

2012-01-01

Oshox22 belongs to the homeodomain-leucine zipper (HD-Zip) family I of transcription factors, most of which have unknown functions. Here we show that the expression of Oshox22 is strongly induced by salt stress, abscisic acid (ABA), and polyethylene glycol treatment (PEG), and weakly by cold stress.

Closed almost-periodic orbits in semiclassical quantization of generic polygons

Science.gov (United States)

Biswas

2000-05-01

Periodic orbits are the central ingredients of modern semiclassical theories and corrections to these are generally nonclassical in origin. We show here that, for the class of generic polygonal billiards, the corrections are predominantly classical in origin owing to the contributions from closed almost-periodic (CAP) orbit families. Furthermore, CAP orbit families outnumber periodic families but have comparable weights. They are hence indispensable for semiclassical quantization.

Hydrobiological investigations of Kytalyk Wildlife Reserve polygonal ponds (North-Eastern Yakutia)

Science.gov (United States)

Nigamatzyanova, G.; Frolova, L.; Pestryakova, L.

2018-01-01

In the following article there are introduced the first researching results of 27 water bodies of polygonal tundra in Kytalyk Wildlife Reserve in the summer 2011. The evaluation of physic-hydrochemical indexes of water bodies is given. The basic structure-forming characteristics of zooplankton communities are analyzed. The ecological state of the lakes is estimated.

Mimetic finite difference method for the stokes problem on polygonal meshes

Energy Technology Data Exchange (ETDEWEB)

Lipnikov, K [Los Alamos National Laboratory; Beirao Da Veiga, L [DIPARTIMENTO DI MATE; Gyrya, V [PENNSYLVANIA STATE UNIV; Manzini, G [ISTIUTO DI MATEMATICA

2009-01-01