WorldWideScience

Sample records for pol ii paralogs

  1. Pharmacological activation of myosin II paralogs to correct cell mechanics defects.

    Science.gov (United States)

    Surcel, Alexandra; Ng, Win Pin; West-Foyle, Hoku; Zhu, Qingfeng; Ren, Yixin; Avery, Lindsay B; Krenc, Agata K; Meyers, David J; Rock, Ronald S; Anders, Robert A; Freel Meyers, Caren L; Robinson, Douglas N

    2015-02-03

    Current approaches to cancer treatment focus on targeting signal transduction pathways. Here, we develop an alternative system for targeting cell mechanics for the discovery of novel therapeutics. We designed a live-cell, high-throughput chemical screen to identify mechanical modulators. We characterized 4-hydroxyacetophenone (4-HAP), which enhances the cortical localization of the mechanoenzyme myosin II, independent of myosin heavy-chain phosphorylation, thus increasing cellular cortical tension. To shift cell mechanics, 4-HAP requires myosin II, including its full power stroke, specifically activating human myosin IIB (MYH10) and human myosin IIC (MYH14), but not human myosin IIA (MYH9). We further demonstrated that invasive pancreatic cancer cells are more deformable than normal pancreatic ductal epithelial cells, a mechanical profile that was partially corrected with 4-HAP, which also decreased the invasion and migration of these cancer cells. Overall, 4-HAP modifies nonmuscle myosin II-based cell mechanics across phylogeny and disease states and provides proof of concept that cell mechanics offer a rich drug target space, allowing for possible corrective modulation of tumor cell behavior.

  2. Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons

    NARCIS (Netherlands)

    Jonkers, Iris; Kwak, Hojoong; Lis, John T

    2014-01-01

    Production of mRNA depends critically on the rate of RNA polymerase II (Pol II) elongation. To dissect Pol II dynamics in mouse ES cells, we inhibited Pol II transcription at either initiation or promoter-proximal pause escape with Triptolide or Flavopiridol, and tracked Pol II kinetically using

  3. Involvement of specialized DNA polymerases Pol II, Pol IV and DnaE2 in DNA replication in the absence of Pol I in Pseudomonas putida

    International Nuclear Information System (INIS)

    Sidorenko, Julia; Jatsenko, Tatjana; Saumaa, Signe; Teras, Riho; Tark-Dame, Mariliis; Horak, Rita; Kivisaar, Maia

    2011-01-01

    The majority of bacteria possess a different set of specialized DNA polymerases than those identified in the most common model organism Escherichia coli. Here, we have studied the ability of specialized DNA polymerases to substitute Pol I in DNA replication in Pseudomonas putida. Our results revealed that P. putida Pol I-deficient cells have severe growth defects in LB medium, which is accompanied by filamentous cell morphology. However, growth of Pol I-deficient bacteria on solid rich medium can be restored by reduction of reactive oxygen species in cells. Also, mutants with improved growth emerge rapidly. Similarly to the initial Pol I-deficient P. putida, its adapted derivatives express a moderate mutator phenotype, which indicates that DNA replication carried out in the absence of Pol I is erroneous both in the original Pol I-deficient bacteria and the adapted derivatives. Analysis of the spectra of spontaneous Rif r mutations in P. putida strains lacking different DNA polymerases revealed that the presence of specialized DNA polymerases Pol II and Pol IV influences the frequency of certain base substitutions in Pol I-proficient and Pol I-deficient backgrounds in opposite ways. Involvement of another specialized DNA polymerase DnaE2 in DNA replication in Pol I-deficient bacteria is stimulated by UV irradiation of bacteria, implying that DnaE2-provided translesion synthesis partially substitutes the absence of Pol I in cells containing heavily damaged DNA.

  4. Involvement of specialized DNA polymerases Pol II, Pol IV and DnaE2 in DNA replication in the absence of Pol I in Pseudomonas putida

    Energy Technology Data Exchange (ETDEWEB)

    Sidorenko, Julia; Jatsenko, Tatjana; Saumaa, Signe; Teras, Riho; Tark-Dame, Mariliis; Horak, Rita [Department of Genetics, Institute of Molecular and Cell Biology, Tartu University and Estonian Biocentre, 23 Riia Street, 51010 Tartu (Estonia); Kivisaar, Maia, E-mail: maiak@ebc.ee [Department of Genetics, Institute of Molecular and Cell Biology, Tartu University and Estonian Biocentre, 23 Riia Street, 51010 Tartu (Estonia)

    2011-09-01

    The majority of bacteria possess a different set of specialized DNA polymerases than those identified in the most common model organism Escherichia coli. Here, we have studied the ability of specialized DNA polymerases to substitute Pol I in DNA replication in Pseudomonas putida. Our results revealed that P. putida Pol I-deficient cells have severe growth defects in LB medium, which is accompanied by filamentous cell morphology. However, growth of Pol I-deficient bacteria on solid rich medium can be restored by reduction of reactive oxygen species in cells. Also, mutants with improved growth emerge rapidly. Similarly to the initial Pol I-deficient P. putida, its adapted derivatives express a moderate mutator phenotype, which indicates that DNA replication carried out in the absence of Pol I is erroneous both in the original Pol I-deficient bacteria and the adapted derivatives. Analysis of the spectra of spontaneous Rif{sup r} mutations in P. putida strains lacking different DNA polymerases revealed that the presence of specialized DNA polymerases Pol II and Pol IV influences the frequency of certain base substitutions in Pol I-proficient and Pol I-deficient backgrounds in opposite ways. Involvement of another specialized DNA polymerase DnaE2 in DNA replication in Pol I-deficient bacteria is stimulated by UV irradiation of bacteria, implying that DnaE2-provided translesion synthesis partially substitutes the absence of Pol I in cells containing heavily damaged DNA.

  5. File list: Pol.Kid.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Kid.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Kidney S...X1206068,SRX1206073,SRX1206074,SRX1206072,SRX1206071,SRX003882,SRX367323 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Kid.10.RNA_polymerase_II.AllCell.bed ...

  6. File list: Pol.Neu.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Neu.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Neural S...6,SRX743838,SRX743832,SRX743834,SRX743840 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Neu.20.RNA_polymerase_II.AllCell.bed ...

  7. File list: Pol.Emb.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.10.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Embryo SR...7582,SRX050604,SRX050605,SRX013077 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Emb.10.RNA_polymerase_II.AllCell.bed ...

  8. File list: Pol.Bon.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bon.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Bone SRX...,SRX351408 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bon.20.RNA_polymerase_II.AllCell.bed ...

  9. File list: Pol.ALL.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.20.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II All c...ell types http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.ALL.20.RNA_polymerase_II.AllCell.bed ...

  10. File list: Pol.Neu.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Neu.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Neural S...1,SRX099887,SRX099886,SRX743834,SRX743832 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Neu.05.RNA_polymerase_II.AllCell.bed ...

  11. File list: Pol.Oth.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Oth.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Others S...RX1027435,SRX668218,SRX1027436,SRX1027434,SRX1027433,SRX099879,SRX099880 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Oth.05.RNA_polymerase_II.AllCell.bed ...

  12. File list: Pol.Kid.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Kid.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Kidney S...SRX1206072,SRX1206066,SRX326423,SRX1206067,SRX003883,SRX003882,SRX367323 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Kid.20.RNA_polymerase_II.AllCell.bed ...

  13. File list: Pol.Bon.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bon.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Bone SRX...,SRX351408 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bon.10.RNA_polymerase_II.AllCell.bed ...

  14. File list: Pol.Emb.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.05.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Embryo SR...7582,SRX013077,SRX050604,SRX050605 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Emb.05.RNA_polymerase_II.AllCell.bed ...

  15. File list: Pol.Plc.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Plc.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Placenta... http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Plc.50.RNA_polymerase_II.AllCell.bed ...

  16. File list: Pol.Kid.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Kid.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Kidney S...SRX128201,SRX128200,SRX003882,SRX1206065,SRX1206066,SRX1206067,SRX367323 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Kid.05.RNA_polymerase_II.AllCell.bed ...

  17. File list: Pol.Gon.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Gon.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Gonad ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Gon.50.RNA_polymerase_II.AllCell.bed ...

  18. File list: Pol.Emb.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.20.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Embryo S...,SRX043869 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Emb.20.RNA_polymerase_II.AllCell.bed ...

  19. File list: Pol.Adp.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adp.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Adipocyt...e SRX682084,SRX682086,SRX682085,SRX682083 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Adp.50.RNA_polymerase_II.AllCell.bed ...

  20. File list: Pol.Epd.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Epd.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Epidermi...245,SRX663247,SRX807622 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Epd.05.RNA_polymerase_II.AllCell.bed ...

  1. File list: Pol.Utr.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Utr.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Uterus S...SRX573070,SRX027921,SRX1048949,SRX1136641,SRX1136638,SRX099217 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Utr.05.RNA_polymerase_II.AllCell.bed ...

  2. File list: Pol.CDV.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Cardiova...,SRX080152,SRX080153,SRX367018,SRX367016 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.CDV.10.RNA_polymerase_II.AllCell.bed ...

  3. File list: Pol.Emb.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.05.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Embryo S...,SRX043867 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Emb.05.RNA_polymerase_II.AllCell.bed ...

  4. File list: Pol.Unc.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Unclassi...fied http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Unc.10.RNA_polymerase_II.AllCell.bed ...

  5. File list: Pol.YSt.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.YSt.20.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II Yeast... strain http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.YSt.20.RNA_polymerase_II.AllCell.bed ...

  6. File list: Pol.Emb.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.10.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Embryo S...,SRX043867 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Emb.10.RNA_polymerase_II.AllCell.bed ...

  7. File list: Pol.Emb.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.50.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Embryo S...,SRX043866 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Emb.50.RNA_polymerase_II.AllCell.bed ...

  8. File list: Pol.ALL.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.50.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II All c...ell types http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.ALL.50.RNA_polymerase_II.AllCell.bed ...

  9. File list: Pol.Myo.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Myo.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Muscle h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Myo.05.RNA_polymerase_II.AllCell.bed ...

  10. File list: Pol.Unc.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Unclassi...fied http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Unc.05.RNA_polymerase_II.AllCell.bed ...

  11. File list: Pol.Myo.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Myo.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Muscle h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Myo.20.RNA_polymerase_II.AllCell.bed ...

  12. File list: Pol.ALL.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II All cell...,SRX1013886,SRX1013900 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.ALL.05.RNA_polymerase_II.AllCell.bed ...

  13. File list: Pol.Liv.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Liv.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Liver SR...1013886 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Liv.50.RNA_polymerase_II.AllCell.bed ...

  14. File list: Pol.Pup.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Pup.05.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Pupae SRX...013069 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Pup.05.RNA_polymerase_II.AllCell.bed ...

  15. File list: Pol.Dig.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Dig.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Digestiv...//dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Dig.10.RNA_polymerase_II.AllCell.bed ...

  16. File list: Pol.Epd.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Epd.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Epidermi...247,SRX080162,SRX807622 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Epd.50.RNA_polymerase_II.AllCell.bed ...

  17. File list: Pol.Bld.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Blood SR...,SRX153079,SRX017717,SRX103447,SRX386121,SRX038919,SRX038920,SRX080132 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.50.RNA_polymerase_II.AllCell.bed ...

  18. File list: Pol.Pup.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Pup.10.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Pupae SRX...013069 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Pup.10.RNA_polymerase_II.AllCell.bed ...

  19. File list: Pol.Dig.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Dig.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Digestiv...//dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Dig.05.RNA_polymerase_II.AllCell.bed ...

  20. File list: Pol.Kid.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Kid.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Kidney S...SRX1206066,SRX1206067,SRX003882,SRX003883,SRX1206065,SRX367323,SRX326416 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Kid.50.RNA_polymerase_II.AllCell.bed ...

  1. File list: Pol.Pan.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Pan.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Pancreas... SRX190244 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Pan.05.RNA_polymerase_II.AllCell.bed ...

  2. File list: Pol.ALL.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.05.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II All c...ell types http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.ALL.05.RNA_polymerase_II.AllCell.bed ...

  3. File list: Pol.Epd.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Epd.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Epidermi...246,SRX663247,SRX807622 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Epd.10.RNA_polymerase_II.AllCell.bed ...

  4. File list: Pol.Gon.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Gon.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Gonad ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Gon.20.RNA_polymerase_II.AllCell.bed ...

  5. File list: Pol.CDV.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Cardiova...,SRX346933,SRX346936,SRX367018,SRX367016 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.CDV.20.RNA_polymerase_II.AllCell.bed ...

  6. File list: Pol.Oth.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Oth.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Others S...RX1027436,SRX1027435,SRX1027434,SRX1027433,SRX668218,SRX099880,SRX099879 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Oth.20.RNA_polymerase_II.AllCell.bed ...

  7. File list: Pol.Plc.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Plc.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Placenta... http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Plc.05.RNA_polymerase_II.AllCell.bed ...

  8. File list: Pol.YSt.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.YSt.50.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II Yeast... strain http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.YSt.50.RNA_polymerase_II.AllCell.bed ...

  9. File list: Pol.ALL.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.05.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II All cell ...013077,SRX050604,SRX050605 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.ALL.05.RNA_polymerase_II.AllCell.bed ...

  10. File list: Pol.Epd.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Epd.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Epidermi...248,SRX663247,SRX807622 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Epd.20.RNA_polymerase_II.AllCell.bed ...

  11. File list: Pol.Emb.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.50.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Embryo SR...7582,SRX050604,SRX050605,SRX013073 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Emb.50.RNA_polymerase_II.AllCell.bed ...

  12. File list: Pol.ALL.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II All cell...0,SRX1013886,SRX016705 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.ALL.20.RNA_polymerase_II.AllCell.bed ...

  13. File list: Pol.Adl.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adl.20.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Adult SR...SRX554718,SRX043965,SRX043963,SRX043964 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Adl.20.RNA_polymerase_II.AllCell.bed ...

  14. File list: Pol.Lar.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Lar.05.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Larvae SR...SRX151962,SRX182775,SRX661503,SRX013070,SRX013072,SRX013113,SRX013082,SRX151961 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Lar.05.RNA_polymerase_II.AllCell.bed ...

  15. File list: Pol.Unc.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.50.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Unclassif...ied SRX110774 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Unc.50.RNA_polymerase_II.AllCell.bed ...

  16. File list: Pol.Unc.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.20.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II Uncla...ssified http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.Unc.20.RNA_polymerase_II.AllCell.bed ...

  17. File list: Pol.Lng.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Lng.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Lung SRX... http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Lng.20.RNA_polymerase_II.AllCell.bed ...

  18. File list: Pol.Plc.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Plc.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Placenta... http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Plc.10.RNA_polymerase_II.AllCell.bed ...

  19. File list: Pol.ALL.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.20.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II All cell...3874,SRX003817,SRX043845,SRX043964,SRX043967,SRX043881,SRX043879 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.ALL.20.RNA_polymerase_II.AllCell.bed ...

  20. File list: Pol.ALL.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.10.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II All c...ell types http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.ALL.10.RNA_polymerase_II.AllCell.bed ...

  1. File list: Pol.Utr.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Utr.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Uterus S...,SRX245742,SRX811393,SRX1136641,SRX099216,SRX1048949,SRX099217 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Utr.10.RNA_polymerase_II.AllCell.bed ...

  2. File list: Pol.Adl.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adl.05.RNA_Polymerase_II.AllCell ce10 RNA polymerase RNA Polymerase II Adult SR...SRX1388757,SRX1388756 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Adl.05.RNA_Polymerase_II.AllCell.bed ...

  3. File list: Pol.ALL.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II All cell ...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.ALL.20.RNA_Polymerase_II.AllCell.bed ...

  4. File list: Pol.Liv.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Liv.10.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Liver SRX...1,SRX020172,SRX020181,SRX020178,SRX193438,SRX193437,SRX020174,ERX204060,ERX204064 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Liv.10.RNA_Polymerase_II.AllCell.bed ...

  5. File list: Pol.Lar.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Lar.10.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Larvae SR...SRX661503,SRX026743,SRX013070,SRX013072,SRX182775,SRX013113,SRX013082,SRX151961 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Lar.10.RNA_polymerase_II.AllCell.bed ...

  6. File list: Pol.Myo.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Myo.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Muscle SR.../dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Myo.05.RNA_Polymerase_II.AllCell.bed ...

  7. File list: Pol.Adp.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adp.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Adipocyt...e SRX682084,SRX682086,SRX682083,SRX682085 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Adp.20.RNA_polymerase_II.AllCell.bed ...

  8. File list: Pol.Bld.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Blood SRX...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.20.RNA_Polymerase_II.AllCell.bed ...

  9. File list: Pol.Oth.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Oth.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Others SR...X736457,SRX736456,SRX112963,SRX143827,SRX335666,SRX112981,SRX143834,SRX957689 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Oth.20.RNA_Polymerase_II.AllCell.bed ...

  10. File list: Pol.YSt.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.YSt.10.RNA_Polymerase_II.AllCell sacCer3 RNA polymerase RNA Polymerase II Yeast... strain SRX092435,SRX360917,SRX360914,SRX497380,SRX497382,SRX497381,SRX360915 http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.YSt.10.RNA_Polymerase_II.AllCell.bed ...

  11. File list: Pol.Neu.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Neu.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Neural SR...,SRX685285,SRX217736 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Neu.20.RNA_Polymerase_II.AllCell.bed ...

  12. File list: Pol.Kid.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Kid.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Kidney SR...X661587,SRX062964,SRX143850,SRX236087,SRX020250 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Kid.20.RNA_Polymerase_II.AllCell.bed ...

  13. File list: Pol.Emb.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.20.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Embryo SR...0604,SRX013077,SRX050605,SRX197581 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Emb.20.RNA_polymerase_II.AllCell.bed ...

  14. File list: Pol.ALL.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.ALL.10.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II All cell ...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.ALL.10.RNA_Polymerase_II.AllCell.bed ...

  15. File list: Pol.Unc.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.05.RNA_Polymerase_II.AllCell ce10 RNA polymerase RNA Polymerase II Unclassi...fied http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Unc.05.RNA_Polymerase_II.AllCell.bed ...

  16. File list: Pol.CDV.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Cardiovas...X320034,SRX346170,SRX346169,SRX373605,SRX680476 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.20.RNA_Polymerase_II.AllCell.bed ...

  17. File list: Pol.Adl.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adl.05.RNA_polymerase_II.AllCell ce10 RNA polymerase RNA polymerase II Adult SR...SRX005635,SRX554718,SRX043963,SRX043965 http://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Adl.05.RNA_polymerase_II.AllCell.bed ...

  18. File list: Pol.Myo.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Myo.10.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Muscle SR.../dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Myo.10.RNA_Polymerase_II.AllCell.bed ...

  19. File list: Pol.Utr.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Utr.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Uterus SR...X508008,SRX129063,SRX314629,SRX508009,SRX129064,SRX314630 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Utr.05.RNA_Polymerase_II.AllCell.bed ...

  20. File list: Pol.Gon.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Gon.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Gonad ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Gon.05.RNA_polymerase_II.AllCell.bed ...

  1. File list: Pol.Epd.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Epd.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Epidermis... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Epd.05.RNA_Polymerase_II.AllCell.bed ...

  2. File list: Pol.Lng.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Lng.10.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Lung SRX1...43816,SRX062976,SRX020252 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Lng.10.RNA_Polymerase_II.AllCell.bed ...

  3. File list: Pol.Oth.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Oth.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Others SR...X143827,SRX112963,SRX736456,SRX736457,SRX112981,SRX143834,SRX335666,SRX957689 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Oth.05.RNA_Polymerase_II.AllCell.bed ...

  4. File list: Pol.Spl.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Spl.10.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Spleen SR...X062981,SRX143838,SRX020253 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Spl.10.RNA_Polymerase_II.AllCell.bed ...

  5. File list: Pol.CDV.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Cardiova...,SRX367018,SRX367016,SRX112014,SRX112013 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.CDV.50.RNA_polymerase_II.AllCell.bed ...

  6. File list: Pol.Emb.50.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.50.RNA_Polymerase_II.AllCell ce10 RNA polymerase RNA Polymerase II Embryo h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Emb.50.RNA_Polymerase_II.AllCell.bed ...

  7. File list: Pol.Utr.50.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Utr.50.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Uterus SR...X508008,SRX508009,SRX129063,SRX129064,SRX314629,SRX314630 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Utr.50.RNA_Polymerase_II.AllCell.bed ...

  8. File list: Pol.Unc.20.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.20.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Unclassif...ied SRX254629 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Unc.20.RNA_Polymerase_II.AllCell.bed ...

  9. File list: Pol.Adp.50.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Adp.50.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Adipocyte... SRX800011,SRX800010,SRX341031,SRX341032,SRX341029,SRX800016,SRX800017,SRX341030 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Adp.50.RNA_Polymerase_II.AllCell.bed ...

  10. File list: Pol.Emb.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Emb.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II Embryo SR...SRX099707 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Emb.05.RNA_Polymerase_II.AllCell.bed ...

  11. File list: Pol.YSt.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.YSt.10.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II Yeast... strain http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.YSt.10.RNA_polymerase_II.AllCell.bed ...

  12. File list: Pol.Lar.50.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Lar.50.RNA_Polymerase_II.AllCell ce10 RNA polymerase RNA Polymerase II Larvae h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/ce10/assembled/Pol.Lar.50.RNA_Polymerase_II.AllCell.bed ...

  13. Mitotic Transcriptional Activation: Clearance of Actively Engaged Pol II via Transcriptional Elongation Control in Mitosis.

    Science.gov (United States)

    Liang, Kaiwei; Woodfin, Ashley R; Slaughter, Brian D; Unruh, Jay R; Box, Andrew C; Rickels, Ryan A; Gao, Xin; Haug, Jeffrey S; Jaspersen, Sue L; Shilatifard, Ali

    2015-11-05

    Although it is established that some general transcription factors are inactivated at mitosis, many details of mitotic transcription inhibition (MTI) and its underlying mechanisms are largely unknown. We have identified mitotic transcriptional activation (MTA) as a key regulatory step to control transcription in mitosis for genes with transcriptionally engaged RNA polymerase II (Pol II) to activate and transcribe until the end of the gene to clear Pol II from mitotic chromatin, followed by global impairment of transcription reinitiation through MTI. Global nascent RNA sequencing and RNA fluorescence in situ hybridization demonstrate the existence of transcriptionally engaged Pol II in early mitosis. Both genetic and chemical inhibition of P-TEFb in mitosis lead to delays in the progression of cell division. Together, our study reveals a mechanism for MTA and MTI whereby transcriptionally engaged Pol II can progress into productive elongation and finish transcription to allow proper cellular division. Copyright © 2015 Elsevier Inc. All rights reserved.

  14. The paralogous salivary anti-complement proteins IRAC I and IRAC II encoded by Ixodes ricinus ticks have broad and complementary inhibitory activities against the complement of different host species.

    Science.gov (United States)

    Schroeder, Hélène; Daix, Virginie; Gillet, Laurent; Renauld, Jean-Christophe; Vanderplasschen, Alain

    2007-02-01

    Several observations suggest that inhibition of the host complement alternative pathway by Ixodes tick saliva is crucial to achieve blood feeding. We recently described two paralogous anti-complement proteins called Ixodes ricinus anti-complement (IRAC) proteins I and II co-expressed in I. ricinus salivary glands. Phylogenetic analyses suggested that these sequences were diversifying by a process of positive Darwinian selection, possibly leading to molecules with different biological properties. In the present study, we tested the hypothesis that each paralogue may have different inhibitory activities against the complement of different natural host species, thereby contributing to broaden the host range of I. ricinus ticks. IRAC I and IRAC II were tested against the complement of eight I. ricinus natural host species (six mammals and two birds). The results demonstrate that IRAC I and IRAC II have broad and complementary inhibition activities against the complement of different host species. This report is the first description of paralogous anti-complement molecules encoded by a pathogen with broad and complementary inhibitory activities against the complement of different host species.

  15. File list: Pol.NoD.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.50.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.50.RNA_polymerase_II.AllCell.bed ...

  16. File list: Pol.NoD.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II No descr...iption http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.NoD.10.RNA_polymerase_II.AllCell.bed ...

  17. File list: Pol.NoD.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.20.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.20.RNA_polymerase_II.AllCell.bed ...

  18. File list: Pol.NoD.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II No descr...iption http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.NoD.20.RNA_polymerase_II.AllCell.bed ...

  19. File list: Pol.CeL.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CeL.50.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II Cell line...70,SRX749072,SRX749071,SRX749073,SRX017852,SRX529168 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.CeL.50.RNA_polymerase_II.AllCell.bed ...

  20. File list: Pol.NoD.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.10.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.10.RNA_polymerase_II.AllCell.bed ...

  1. File list: Pol.NoD.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.50.RNA_polymerase_II.AllCell dm3 RNA polymerase RNA polymerase II No descri...ption http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.NoD.50.RNA_polymerase_II.AllCell.bed ...

  2. File list: Pol.NoD.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II No descr...iption http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.NoD.50.RNA_polymerase_II.AllCell.bed ...

  3. File list: Pol.NoD.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.05.RNA_polymerase_II.AllCell sacCer3 RNA polymerase RNA polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.05.RNA_polymerase_II.AllCell.bed ...

  4. File list: Pol.NoD.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.05.RNA_Polymerase_II.AllCell mm9 RNA polymerase RNA Polymerase II No descri...ption http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.NoD.05.RNA_Polymerase_II.AllCell.bed ...

  5. File list: Pol.NoD.10.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.10.RNA_Polymerase_II.AllCell sacCer3 RNA polymerase RNA Polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.10.RNA_Polymerase_II.AllCell.bed ...

  6. File list: Pol.NoD.05.RNA_Polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.NoD.05.RNA_Polymerase_II.AllCell sacCer3 RNA polymerase RNA Polymerase II No de...scription http://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.NoD.05.RNA_Polymerase_II.AllCell.bed ...

  7. Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors.

    Science.gov (United States)

    Oler, Andrew J; Alla, Ravi K; Roberts, Douglas N; Wong, Alexander; Hollenhorst, Peter C; Chandler, Katherine J; Cassiday, Patrick A; Nelson, Cassie A; Hagedorn, Curt H; Graves, Barbara J; Cairns, Bradley R

    2010-05-01

    RNA polymerase (Pol) III transcribes many noncoding RNAs (for example, transfer RNAs) important for translational capacity and other functions. We localized Pol III, alternative TFIIIB complexes (BRF1 or BRF2) and TFIIIC in HeLa cells to determine the Pol III transcriptome, define gene classes and reveal 'TFIIIC-only' sites. Pol III localization in other transformed and primary cell lines reveals previously uncharacterized and cell type-specific Pol III loci as well as one microRNA. Notably, only a fraction of the in silico-predicted Pol III loci are occupied. Many occupied Pol III genes reside within an annotated Pol II promoter. Outside of Pol II promoters, occupied Pol III genes overlap with enhancer-like chromatin and enhancer-binding proteins such as ETS1 and STAT1. Moreover, Pol III occupancy scales with the levels of nearby Pol II, active chromatin and CpG content. These results suggest that active chromatin gates Pol III accessibility to the genome.

  8. Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons.

    Science.gov (United States)

    Jonkers, Iris; Kwak, Hojoong; Lis, John T

    2014-04-29

    Production of mRNA depends critically on the rate of RNA polymerase II (Pol II) elongation. To dissect Pol II dynamics in mouse ES cells, we inhibited Pol II transcription at either initiation or promoter-proximal pause escape with Triptolide or Flavopiridol, and tracked Pol II kinetically using GRO-seq. Both inhibitors block transcription of more than 95% of genes, showing that pause escape, like initiation, is a ubiquitous and crucial step within the transcription cycle. Moreover, paused Pol II is relatively stable, as evidenced from half-life measurements at ∼3200 genes. Finally, tracking the progression of Pol II after drug treatment establishes Pol II elongation rates at over 1000 genes. Notably, Pol II accelerates dramatically while transcribing through genes, but slows at exons. Furthermore, intergenic variance in elongation rates is substantial, and is influenced by a positive effect of H3K79me2 and negative effects of exon density and CG content within genes.DOI: http://dx.doi.org/10.7554/eLife.02407.001. Copyright © 2014, Jonkers et al.

  9. Role of Mediator in Regulating Pol II Elongation and Nucleosome Displacement in Saccharomyces cerevisiae

    Science.gov (United States)

    Kremer, Selena B.; Kim, Sunyoung; Jeon, Jeong Ok; Moustafa, Yara W.; Chen, Apeng; Zhao, Jing; Gross, David S.

    2012-01-01

    Mediator is a modular multisubunit complex that functions as a critical coregulator of RNA polymerase II (Pol II) transcription. While it is well accepted that Mediator plays important roles in the assembly and function of the preinitiation complex (PIC), less is known of its potential roles in regulating downstream steps of the transcription cycle. Here we use a combination of genetic and molecular approaches to investigate Mediator regulation of Pol II elongation in the model eukaryote, Saccharomyces cerevisiae. We find that ewe (expression without heat shock element) mutations in conserved Mediator subunits Med7, Med14, Med19, and Med21—all located within or adjacent to the middle module—severely diminish heat-shock–induced expression of the Hsf1-regulated HSP82 gene. Interestingly, these mutations do not impede Pol II recruitment to the gene’s promoter but instead impair its transit through the coding region. This implies that a normal function of Mediator is to regulate a postinitiation step at HSP82. In addition, displacement of histones from promoter and coding regions, a hallmark of activated heat-shock genes, is significantly impaired in the med14 and med21 mutants. Suggestive of a more general role, ewe mutations confer hypersensitivity to the anti-elongation drug 6-azauracil (6-AU) and one of them—med21—impairs Pol II processivity on a GAL1-regulated reporter gene. Taken together, our results suggest that yeast Mediator, acting principally through its middle module, can regulate Pol II elongation at both heat-shock and non–heat-shock genes. PMID:22377631

  10. A large fraction of extragenic RNA pol II transcription sites overlap enhancers.

    Directory of Open Access Journals (Sweden)

    Francesca De Santa

    2010-05-01

    Full Text Available Mammalian genomes are pervasively transcribed outside mapped protein-coding genes. One class of extragenic transcription products is represented by long non-coding RNAs (lncRNAs, some of which result from Pol_II transcription of bona-fide RNA genes. Whether all lncRNAs described insofar are products of RNA genes, however, is still unclear. Here we have characterized transcription sites located outside protein-coding genes in a highly regulated response, macrophage activation by endotoxin. Using chromatin signatures, we could unambiguously classify extragenic Pol_II binding sites as belonging to either canonical RNA genes or transcribed enhancers. Unexpectedly, 70% of extragenic Pol_II peaks were associated with genomic regions with a canonical chromatin signature of enhancers. Enhancer-associated extragenic transcription was frequently adjacent to inducible inflammatory genes, was regulated in response to endotoxin stimulation, and generated very low abundance transcripts. Moreover, transcribed enhancers were under purifying selection and contained binding sites for inflammatory transcription factors, thus suggesting their functionality. These data demonstrate that a large fraction of extragenic Pol_II transcription sites can be ascribed to cis-regulatory genomic regions. Discrimination between lncRNAs generated by canonical RNA genes and products of transcribed enhancers will provide a framework for experimental approaches to lncRNAs and help complete the annotation of mammalian genomes.

  11. Competition of Escherichia coli DNA polymerases I, II and III with DNA Pol IV in stressed cells.

    Directory of Open Access Journals (Sweden)

    P J Hastings

    2010-05-01

    Full Text Available Escherichia coli has five DNA polymerases, one of which, the low-fidelity Pol IV or DinB, is required for stress-induced mutagenesis in the well-studied Lac frameshift-reversion assay. Although normally present at approximately 200 molecules per cell, Pol IV is recruited to acts of DNA double-strand-break repair, and causes mutagenesis, only when at least two cellular stress responses are activated: the SOS DNA-damage response, which upregulates DinB approximately 10-fold, and the RpoS-controlled general-stress response, which upregulates Pol IV about 2-fold. DNA Pol III was also implicated but its role in mutagenesis was unclear. We sought in vivo evidence on the presence and interactions of multiple DNA polymerases during stress-induced mutagenesis. Using multiply mutant strains, we provide evidence of competition of DNA Pols I, II and III with Pol IV, implying that they are all present at sites of stress-induced mutagenesis. Previous data indicate that Pol V is also present. We show that the interactions of Pols I, II and III with Pol IV result neither from, first, induction of the SOS response when particular DNA polymerases are removed, nor second, from proofreading of DNA Pol IV errors by the editing functions of Pol I or Pol III. Third, we provide evidence that Pol III itself does not assist with but rather inhibits Pol IV-dependent mutagenesis. The data support the remaining hypothesis that during the acts of DNA double-strand-break (DSB repair, shown previously to underlie stress-induced mutagenesis in the Lac system, there is competition of DNA polymerases I, II and III with DNA Pol IV for action at the primer terminus. Up-regulation of Pol IV, and possibly other stress-response-controlled factor(s, tilt the competition in favor of error-prone Pol IV at the expense of more accurate polymerases, thus producing stress-induced mutations. This mutagenesis assay reveals the DNA polymerases operating in DSB repair during stress and also

  12. The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo.

    Science.gov (United States)

    Chopra, Vivek S; Hendrix, David A; Core, Leighton J; Tsui, Chiahao; Lis, John T; Levine, Michael

    2011-06-24

    Many developmental control genes contain paused RNA polymerase II (Pol II) and are thereby "poised" for rapid and synchronous activation in the early Drosophila embryo. Evidence is presented that Polycomb group (PcG) repressors can influence paused Pol II. ChIP-Seq and GRO-Seq assays were used to determine the genome-wide distributions of Pol II, H3K27me3, and H3K4me3 in extra sex combs (esc) mutant embryos. ESC is a key component of the Polycomb repressive complex 2 (PRC2), which mediates H3K27me3 modification. Enhanced Pol II occupancy is observed for thousands of genes in esc mutant embryos, including genes not directly regulated by PRC2. Thus, it would appear that silent genes lacking promoter-associated paused Pol II in wild-type embryos are converted into "poised" genes with paused Pol II in esc mutants. We suggest that this conversion of silent genes into poised genes might render differentiated cell types susceptible to switches in identity in PcG mutants. Copyright © 2011 Elsevier Inc. All rights reserved.

  13. Potent microRNA suppression by RNA Pol II-transcribed ‘Tough Decoy’ inhibitors

    Science.gov (United States)

    Bak, Rasmus O.; Hollensen, Anne Kruse; Primo, Maria Nascimento; Sørensen, Camilla Darum; Mikkelsen, Jacob Giehm

    2013-01-01

    MicroRNAs (miRNAs) are key regulators of gene expression and modulators of diverse biological pathways. Analyses of miRNA function as well as therapeutic managing of miRNAs rely on cellular administration of miRNA inhibitors which may be achieved by the use of viral vehicles. This study explores the miRNA-suppressive capacity of inhibitors expressed intracellularly from lentivirus-derived gene vectors. Superior activity of two decoy-type inhibitors, a “Bulged Sponge” with eight miRNA recognition sites and a hairpin-shaped “Tough Decoy” containing two miRNA recognition sites, is demonstrated in a side-by-side comparison of seven types of miRNA inhibitors transcribed as short RNAs from an RNA Pol III promoter. We find that lentiviral vectors expressing Tough Decoy inhibitors are less vulnerable than Bulged Sponge-encoding vectors to targeting by the cognate miRNA and less prone, therefore, to reductions in transfer efficiency. Importantly, it is demonstrated that Tough Decoy inhibitors retain their miRNA suppression capacity in the context of longer RNA transcripts expressed from an RNA Pol II promoter. Such RNA Pol II-transcribed Tough Decoy inhibitors are new tools in managing of miRNAs and may have potential for temporal and spatial regulation of miRNA activity as well as for therapeutic targeting of miRNAs that are aberrantly expressed in human disease. PMID:23249752

  14. Promoter2.0: for the recognition of PolII promoter sequences

    DEFF Research Database (Denmark)

    Knudsen, Steen; Knudsen, Steen

    1999-01-01

    Motivation : A new approach to the prediction of eukaryotic PolII promoters from DNA sequence takesadvantage of a combination of elements similar to neural networks and genetic algorithms to recognize a set ofdiscrete subpatterns with variable separation as one pattern: a promoter. The neural...... of optimization, the algorithm was able todiscriminate between vertebrate promoter and non-promoter sequences in a test set with a correlationcoefficient of 0.63. In addition, all five known transcription start sites on the plus strand of the completeadenovirus genome were within 161 bp of 35 predicted...... networks use as input a smallwindow of DNA sequence, as well as the output of other neural networks. Through the use of geneticalgorithms, the weights in the neural networks are optimized to discriminate maximally between promoters andnon-promoters. Results : After several thousand generations...

  15. Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides

    Directory of Open Access Journals (Sweden)

    Yu Zu-Guo

    2008-02-01

    Full Text Available Abstract Background Promoter region plays an important role in determining where the transcription of a particular gene should be initiated. Computational prediction of eukaryotic Pol II promoter sequences is one of the most significant problems in sequence analysis. Existing promoter prediction methods are still far from being satisfactory. Results We attempt to recognize the human Pol II promoter sequences from the non-promoter sequences which are made up of exon and intron sequences. Four methods are used: two kinds of multifractal analysis performed on the numeric sequences obtained from the dinucleotide free energy, Z curve analysis and global descriptor of the promoter/non-promoter primary sequences. A total of 141 parameters are extracted from these methods and categorized into seven groups (methods. They are used to generate certain spaces and then each promoter/non-promoter sequence is represented by a point in the corresponding space. All the 120 possible combinations of the seven methods are tested. Based on Fisher's linear discriminant algorithm, with a relatively smaller number of parameters (96 and 117, we get satisfactory discriminant accuracies. Particularly, in the case of 117 parameters, the accuracies for the training and test sets reach 90.43% and 89.79%, respectively. A comparison with five other existing methods indicates that our methods have a better performance. Using the global descriptor method (36 parameters, 17 of the 18 experimentally verified promoter sequences of human chromosome 22 are correctly identified. Conclusion The high accuracies achieved suggest that the methods of this paper are useful for understanding the difficult problem of promoter prediction.

  16. RNA Pol II transcription model and interpretation of GRO-seq data.

    Science.gov (United States)

    Lladser, Manuel E; Azofeifa, Joseph G; Allen, Mary A; Dowell, Robin D

    2017-01-01

    A mixture model and statistical method is proposed to interpret the distribution of reads from a nascent transcriptional assay, such as global run-on sequencing (GRO-seq) data. The model is annotation agnostic and leverages on current understanding of the behavior of RNA polymerase II. Briefly, it assumes that polymerase loads at key positions (transcription start sites) within the genome. Once loaded, polymerase either remains in the initiation form (with some probability) or transitions into an elongating form (with the remaining probability). The model can be fit genome-wide, allowing patterns of Pol II behavior to be assessed on each distinct transcript. Furthermore, it allows for the first time a principled approach to distinguishing the initiation signal from the elongation signal; in particular, it implies a data driven method for calculating the pausing index, a commonly used metric that informs on the behavior of RNA polymerase II. We demonstrate that this approach improves on existing analyses of GRO-seq data and uncovers a novel biological understanding of the impact of knocking down the Male Specific Lethal (MSL) complex in Drosophilia melanogaster.

  17. Simon Thadeas Budek und Christoph Harant von Polžice unter den Alchemisten Kaiser Rudolfs II

    Czech Academy of Sciences Publication Activity Database

    Hausenblasová, J.; Purš, Ivo

    -, č. 9 (2009), s. 70-86 ISSN 1213-5372 Institutional research plan: CEZ:AV0Z80330511 Keywords : Simon Thadeas Budek * Christoph Harant of Polžice * Rudolf II * alchemy * history Subject RIV: AL - Art, Architecture, Cultural Heritage

  18. Characterization of paralogous protein families in rice

    Directory of Open Access Journals (Sweden)

    Zhu Wei

    2008-02-01

    Full Text Available Abstract Background High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa, cultivated rice, is a diploid monocotyledonous species with a ~390 Mb genome that has undergone segmental duplication of a substantial portion of its genome. This, coupled with other genetic events such as tandem duplications, has resulted in a substantial number of its genes, and resulting proteins, occurring in paralogous families. Results Using a computational pipeline that utilizes Pfam and novel protein domains, we characterized paralogous families in rice and compared these with paralogous families in the model dicotyledonous diploid species, Arabidopsis thaliana. Arabidopsis, which has undergone genome duplication as well, has a substantially smaller genome (~120 Mb and gene complement compared to rice. Overall, 53% and 68% of the non-transposable element-related rice and Arabidopsis proteins could be classified into paralogous protein families, respectively. Singleton and paralogous family genes differed substantially in their likelihood of encoding a protein of known or putative function; 26% and 66% of singleton genes compared to 73% and 96% of the paralogous family genes encode a known or putative protein in rice and Arabidopsis, respectively. Furthermore, a major skew in the distribution of specific gene function was observed; a total of 17 Gene Ontology categories in both rice and Arabidopsis were statistically significant in their differential distribution between paralogous family and singleton proteins. In contrast to mammalian organisms, we found that duplicated genes in rice and Arabidopsis tend to have more alternative splice forms. Using data from Massively Parallel Signature Sequencing, we show that a significant portion of the duplicated genes in rice show divergent expression although a correlation between sequence divergence and correlation of expression could be seen in very young genes. Conclusion

  19. Characterization of paralogous protein families in rice.

    Science.gov (United States)

    Lin, Haining; Ouyang, Shu; Egan, Amy; Nobuta, Kan; Haas, Brian J; Zhu, Wei; Gu, Xun; Silva, Joana C; Meyers, Blake C; Buell, C Robin

    2008-02-19

    High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa, cultivated rice, is a diploid monocotyledonous species with a ~390 Mb genome that has undergone segmental duplication of a substantial portion of its genome. This, coupled with other genetic events such as tandem duplications, has resulted in a substantial number of its genes, and resulting proteins, occurring in paralogous families. Using a computational pipeline that utilizes Pfam and novel protein domains, we characterized paralogous families in rice and compared these with paralogous families in the model dicotyledonous diploid species, Arabidopsis thaliana. Arabidopsis, which has undergone genome duplication as well, has a substantially smaller genome (~120 Mb) and gene complement compared to rice. Overall, 53% and 68% of the non-transposable element-related rice and Arabidopsis proteins could be classified into paralogous protein families, respectively. Singleton and paralogous family genes differed substantially in their likelihood of encoding a protein of known or putative function; 26% and 66% of singleton genes compared to 73% and 96% of the paralogous family genes encode a known or putative protein in rice and Arabidopsis, respectively. Furthermore, a major skew in the distribution of specific gene function was observed; a total of 17 Gene Ontology categories in both rice and Arabidopsis were statistically significant in their differential distribution between paralogous family and singleton proteins. In contrast to mammalian organisms, we found that duplicated genes in rice and Arabidopsis tend to have more alternative splice forms. Using data from Massively Parallel Signature Sequencing, we show that a significant portion of the duplicated genes in rice show divergent expression although a correlation between sequence divergence and correlation of expression could be seen in very young genes. Collectively, these data suggest that while co

  20. RNA Pol II promotes transcription of centromeric satellite DNA in beetles.

    Directory of Open Access Journals (Sweden)

    Zeljka Pezer

    Full Text Available Transcripts of centromeric satellite DNAs are known to play a role in heterochromatin formation as well as in establishment of the kinetochore. However, little is known about basic mechanisms of satellite DNA expression within constitutive heterochromatin and its regulation. Here we present comprehensive analysis of transcription of abundant centromeric satellite DNA, PRAT from beetle Palorus ratzeburgii (Coleoptera. This satellite is characterized by preservation and extreme sequence conservation among evolutionarily distant insect species. PRAT is expressed in all three developmental stages: larvae, pupae and adults at similar level. Transcripts are abundant comprising 0.033% of total RNA and are heterogeneous in size ranging from 0.5 kb up to more than 5 kb. Transcription proceeds from both strands but with 10 fold different expression intensity and transcripts are not processed into siRNAs. Most of the transcripts (80% are not polyadenylated and remain in the nucleus while a small portion is exported to the cytoplasm. Multiple, irregularly distributed transcription initiation sites as well as termination sites have been mapped within the PRAT sequence using primer extension and RLM-RACE. The presence of cap structure as well as poly(A tails in a portion of the transcripts indicate RNA polymerase II-dependent transcription and a putative polymerase II promoter site overlaps the most conserved part of the PRAT sequence. The treatment of larvae with alpha-amanitin decreases the level of PRAT transcripts at concentrations that selectively inhibit pol II activity. In conclusion, stable, RNA polymerase II dependant transcripts of abundant centromeric satellite DNA, not regulated by RNAi, have been identified and characterized. This study offers a basic understanding of expression of highly abundant heterochromatic DNA which in beetle species constitutes up to 50% of the genome.

  1. Human pol II promoter prediction: time series descriptors and machine learning.

    Science.gov (United States)

    Gangal, Rajeev; Sharma, Pankaj

    2005-01-01

    Although several in silico promoter prediction methods have been developed to date, they are still limited in predictive performance. The limitations are due to the challenge of selecting appropriate features of promoters that distinguish them from non-promoters and the generalization or predictive ability of the machine-learning algorithms. In this paper we attempt to define a novel approach by using unique descriptors and machine-learning methods for the recognition of eukaryotic polymerase II promoters. In this study, non-linear time series descriptors along with non-linear machine-learning algorithms, such as support vector machine (SVM), are used to discriminate between promoter and non-promoter regions. The basic idea here is to use descriptors that do not depend on the primary DNA sequence and provide a clear distinction between promoter and non-promoter regions. The classification model built on a set of 1000 promoter and 1500 non-promoter sequences, showed a 10-fold cross-validation accuracy of 87% and an independent test set had an accuracy >85% in both promoter and non-promoter identification. This approach correctly identified all 20 experimentally verified promoters of human chromosome 22. The high sensitivity and selectivity indicates that n-mer frequencies along with non-linear time series descriptors, such as Lyapunov component stability and Tsallis entropy, and supervised machine-learning methods, such as SVMs, can be useful in the identification of pol II promoters.

  2. Oct-1, to go or not to go? That is the PolII question.

    Science.gov (United States)

    Pance, Alena

    2016-06-01

    The Oct transcription factors recognise an octamer DNA element from which they regulate transcription of specific target genes. Oct-1 is the only member of the subfamily that is ubiquitously expressed and has a wide role in transcriptional control. Through interaction with various partner proteins, Oct-1 can modulate accessibility to the chromatin to recruit the transcription machinery and form the pre-initiation complex. The recruited PolII is induced to initiate transcription and stalled until elongation is triggered on interaction with signalling transcription factors. In this way, Oct-1 can fulfil general roles in transcription by opening the chromatin as well as transduce extracellular signals by relaying activation through various interacting partners. The emerging picture of Oct-1 is that of a complex and versatile transcription factor with fundamental functions in cell homeostasis and signal response in general as well as cell specific contexts. This article is part of a Special Issue entitled: The Oct Transcription Factor Family, edited by Dr. Dean Tantin. Copyright © 2016 Elsevier B.V. All rights reserved.

  3. Kmt5a Controls Hepatic Metabolic Pathways by Facilitating RNA Pol II Release from Promoter-Proximal Regions.

    Science.gov (United States)

    Nikolaou, Kostas C; Moulos, Panagiotis; Harokopos, Vangelis; Chalepakis, George; Talianidis, Iannis

    2017-07-25

    H4K20 monomethylation maintains genome integrity by regulating proper mitotic condensation, DNA damage response, and replication licensing. Here, we show that, in non-dividing hepatic cells, H4K20Me1 is specifically enriched in active gene bodies and dynamically regulated by the antagonistic action of Kmt5a methylase and Kdm7b demethylase. In liver-specific Kmt5a-deficient mice, reduced levels of H4K20Me 1 correlated with reduced RNA Pol II release from promoter-proximal regions. Genes regulating glucose and fatty acid metabolism were most sensitive to impairment of RNA Pol II release. Downregulation of glycolytic genes resulted in an energy starvation condition partially compensated by AMP-activated protein kinase (AMPK) activation and increased mitochondrial activity. This metabolic reprogramming generated a highly sensitized state that, upon different metabolic stress conditions, quickly aggravated into a senescent phenotype due to ROS overproduction-mediated oxidative DNA damage. The results illustrate how defects in the general process of RNA Pol II transition into a productive elongation phase can trigger specific metabolic changes and genome instability. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

  4. Kmt5a Controls Hepatic Metabolic Pathways by Facilitating RNA Pol II Release from Promoter-Proximal Regions

    Directory of Open Access Journals (Sweden)

    Kostas C. Nikolaou

    2017-07-01

    Full Text Available H4K20 monomethylation maintains genome integrity by regulating proper mitotic condensation, DNA damage response, and replication licensing. Here, we show that, in non-dividing hepatic cells, H4K20Me1 is specifically enriched in active gene bodies and dynamically regulated by the antagonistic action of Kmt5a methylase and Kdm7b demethylase. In liver-specific Kmt5a-deficient mice, reduced levels of H4K20Me1 correlated with reduced RNA Pol II release from promoter-proximal regions. Genes regulating glucose and fatty acid metabolism were most sensitive to impairment of RNA Pol II release. Downregulation of glycolytic genes resulted in an energy starvation condition partially compensated by AMP-activated protein kinase (AMPK activation and increased mitochondrial activity. This metabolic reprogramming generated a highly sensitized state that, upon different metabolic stress conditions, quickly aggravated into a senescent phenotype due to ROS overproduction-mediated oxidative DNA damage. The results illustrate how defects in the general process of RNA Pol II transition into a productive elongation phase can trigger specific metabolic changes and genome instability.

  5. Cell cycle dependent oscillatory expression of estrogen receptor-α links Pol II elongation to neoplastic transformation.

    Science.gov (United States)

    Vantaggiato, Cristina; Tocchetti, Marta; Cappelletti, Vera; Gurtner, Aymone; Villa, Alessandro; Daidone, Maria Grazia; Piaggio, Giulia; Maggi, Adriana; Ciana, Paolo

    2014-07-01

    Decades of studies provided a detailed view of the mechanism of estrogen receptor-α (ERα) regulated gene transcription and the physio-pathological relevance of the genetic programs controlled by this receptor in a variety of tissues. However, still limited is our knowledge on the regulation of ERα synthesis. Preliminary observations showed that the expression of ERα is cell cycle regulated. Here, we have demonstrated that a well described polymorphic sequence in the first intron of ERα (PvuII and XbaI) has a key role in regulating the ERα content in cycling cells. We have shown that the RNA Pol II (Pol II) elongation is blocked at the polymorphic site and that the proto-oncogene c-MYB modulates the release of the pausing polymerase. It is well known that the two SNPs are associated to an increased risk, progression, survival and mortality of endocrine-related cancers, here we have demonstrated that the c-MYB-dependent release of Pol II at a specific phase of the cell cycle is facilitated by the px haplotype, thus leading to a higher ERα mitogenic signal. In breast cancer, this mechanism is disrupted when the hormone refractory phenotype is established; therefore, we propose this oscillator as a novel target for the development of therapies aimed at sensitizing breast cancer resistant to hormonal treatments. Because PvuII and XbaI were associated to a broad range physio-pathological conditions beside neoplastic transformation, we expect that the ERα oscillator contributes to the regulation of the estrogen signal in several tissues.

  6. Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach.

    Science.gov (United States)

    Anwar, Firoz; Baker, Syed Murtuza; Jabid, Taskeed; Mehedi Hasan, Md; Shoyaib, Mohammad; Khan, Haseena; Walshe, Ray

    2008-10-04

    Eukaryotic promoter prediction using computational analysis techniques is one of the most difficult jobs in computational genomics that is essential for constructing and understanding genetic regulatory networks. The increased availability of sequence data for various eukaryotic organisms in recent years has necessitated for better tools and techniques for the prediction and analysis of promoters in eukaryotic sequences. Many promoter prediction methods and tools have been developed to date but they have yet to provide acceptable predictive performance. One obvious criteria to improve on current methods is to devise a better system for selecting appropriate features of promoters that distinguish them from non-promoters. Secondly improved performance can be achieved by enhancing the predictive ability of the machine learning algorithms used. In this paper, a novel approach is presented in which 128 4-mer motifs in conjunction with a non-linear machine-learning algorithm utilising a Support Vector Machine (SVM) are used to distinguish between promoter and non-promoter DNA sequences. By applying this approach to plant, Drosophila, human, mouse and rat sequences, the classification model has showed 7-fold cross-validation percentage accuracies of 83.81%, 94.82%, 91.25%, 90.77% and 82.35% respectively. The high sensitivity and specificity value of 0.86 and 0.90 for plant; 0.96 and 0.92 for Drosophila; 0.88 and 0.92 for human; 0.78 and 0.84 for mouse and 0.82 and 0.80 for rat demonstrate that this technique is less prone to false positive results and exhibits better performance than many other tools. Moreover, this model successfully identifies location of promoter using TATA weight matrix. The high sensitivity and specificity indicate that 4-mer frequencies in conjunction with supervised machine-learning methods can be beneficial in the identification of RNA pol II promoters comparative to other methods. This approach can be extended to identify promoters in sequences

  7. Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach

    Directory of Open Access Journals (Sweden)

    Shoyaib Mohammad

    2008-10-01

    Full Text Available Abstract Background Eukaryotic promoter prediction using computational analysis techniques is one of the most difficult jobs in computational genomics that is essential for constructing and understanding genetic regulatory networks. The increased availability of sequence data for various eukaryotic organisms in recent years has necessitated for better tools and techniques for the prediction and analysis of promoters in eukaryotic sequences. Many promoter prediction methods and tools have been developed to date but they have yet to provide acceptable predictive performance. One obvious criteria to improve on current methods is to devise a better system for selecting appropriate features of promoters that distinguish them from non-promoters. Secondly improved performance can be achieved by enhancing the predictive ability of the machine learning algorithms used. Results In this paper, a novel approach is presented in which 128 4-mer motifs in conjunction with a non-linear machine-learning algorithm utilising a Support Vector Machine (SVM are used to distinguish between promoter and non-promoter DNA sequences. By applying this approach to plant, Drosophila, human, mouse and rat sequences, the classification model has showed 7-fold cross-validation percentage accuracies of 83.81%, 94.82%, 91.25%, 90.77% and 82.35% respectively. The high sensitivity and specificity value of 0.86 and 0.90 for plant; 0.96 and 0.92 for Drosophila; 0.88 and 0.92 for human; 0.78 and 0.84 for mouse and 0.82 and 0.80 for rat demonstrate that this technique is less prone to false positive results and exhibits better performance than many other tools. Moreover, this model successfully identifies location of promoter using TATA weight matrix. Conclusion The high sensitivity and specificity indicate that 4-mer frequencies in conjunction with supervised machine-learning methods can be beneficial in the identification of RNA pol II promoters comparative to other methods. This

  8. Direct HPV E6/Myc interactions induce histone modifications, Pol II phosphorylation, and hTERT promoter activation

    Science.gov (United States)

    Chen, Renxiang; Dai, Yuhai; Schlegel, Richard; Liu, Xuefeng

    2017-01-01

    Human Papillomavirus Viruses (HPVs) are associated with the majority of human cervical and anal cancers and 10-30% of head and neck squamous carcinomas. E6 oncoprotein from high risk HPVs interacts with the p53 tumor suppressor protein to facilitate its degradation and increases telomerase activity for extending the life span of host cells. We published previously that the Myc cellular transcription factor associates with the high-risk HPV E6 protein in vivo and participates in the transactivation of the hTERT promoter. In the present study, we further analyzed the role of E6 and the Myc-Max-Mad network in regulating the hTERT promoter. We confirmed that E6 and Myc interact independently and that Max can also form a complex with E6. However, the E6/Max complex is observed only in the presence of Myc, suggesting that E6 associates with Myc/Max dimers. Consistent with the hypothesis that Myc is required for E6 induction of the hTERT promoter, Myc antagonists (Mad or Mnt) significantly blocked E6-mediated transactivation of the hTERT promoter. Analysis of Myc mutants demonstrated that both the transactivation domain and HLH domain of Myc protein were required for binding E6 and for the consequent transactivation of the hTERT promoter, by either Myc or E6. We also showed that E6 increased phosphorylation of Pol II on the hTERT promoter and induced epigenetic histone modifications of the hTERT promoter. More important, knockdown of Myc expression dramatically decreased engagement of acetyl-histones and Pol II at the hTERT promoter in E6-expressing cells. Thus, E6/Myc interaction triggers the transactivation of the hTERT promoter by modulating both histone modifications, Pol II phosphorylation and promoter engagement, suggesting a novel mechanism for telomerase activation and a new target for HPV- associated human cancer. PMID:29221209

  9. Los grandes, el poder y la cultura política de la nobleza en el reinado de Carlos II

    Directory of Open Access Journals (Sweden)

    Adolfo CARRASCO MARTÍNEZ

    2009-12-01

    Full Text Available RESUMEN: Este artículo se centra en los comportamientos políticos de la aristocracia española durante el reinado de Carlos II. Se estudian las actitudes colectivas del grupo y la evolución de la cultura política nobiliaria en el contexto de las profundas transformaciones que el ejercicio del poder experimentó en el periodo. Grandes y títulos hubieron de dar respuesta a la sucesión de escenarios políticos y, al mismo tiempo, influyeron decisivamente en la marcha de los asuntos. El progresivo deterioro de la autoridad regia determinó el paso a una poliarquía, a un modelo de múltiples centros de poder de equilibrios precarios que reflejaba el debate sobre el absolutismo y la participación política de la alta nobleza. Factores externos, como la cuestión sucesoria y la injerencia de las potencias extranjeras, y factores internos, como la incapacidad nobiliaria de cohesionarse en un proyecto común, la esperanza en liderazgos imposibles y las limitaciones de su cultura política, produjeron la rápida degeneración de la poliarquía en un régimen caótico en el crepúsculo del siglo XVII.ABSTRACT: This paper is focused on the political behaviour of the Spanish aristocracy under the reign of Charles II. It examines the group's general attitudes and the evolution of the noble political consciousness in a context where the exercise of power underwent deep changes. Grandees and titles had to react towards the series of political scenes and at the same time, they decisively had an influence over the course of events. The progressive impairment of the royal authority gave place to a polyarchy, a model of manifold control centres of precarious balance, which reflected the debate between the absolutism and the upper nobility's political concern. External factors, such as successory matters and foreign countries interference, and internal factors, like the noble inability to integrate themselves into a common project, the expectation around

  10. Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis

    Directory of Open Access Journals (Sweden)

    Zhining Sa

    2017-08-01

    Full Text Available Side effects from targeted drugs remain a serious concern. One reason is the nonselective binding of a drug to unintended proteins such as its paralogs, which are highly homologous in sequences and have similar structures and drug-binding pockets. To identify targetable differences between paralogs, we analyzed two types (type-I and type-II of functional divergence between two paralogs in the known target protein receptor family G-protein coupled receptors (GPCRs at the amino acid level. Paralogous protein receptors in glucagon-like subfamily, glucagon receptor (GCGR and glucagon-like peptide-1 receptor (GLP-1R, exhibit divergence in ligands and are clinically validated drug targets for type 2 diabetes. Our data showed that type-II amino acids were significantly enriched in the binding sites of antagonist MK-0893 to GCGR, which had a radical shift in physicochemical properties between GCGR and GLP-1R. We also examined the role of type-I amino acids between GCGR and GLP-1R. The divergent features between GCGR and GLP-1R paralogs may be helpful in their discrimination, thus enabling the identification of binding sites to reduce undesirable side effects and increase the target specificity of drugs.

  11. Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II.

    Directory of Open Access Journals (Sweden)

    Ophir Shalem

    2011-09-01

    Full Text Available Transcriptome dynamics is governed by two opposing processes, mRNA production and degradation. Recent studies found that changes in these processes are frequently coordinated and that the relationship between them shapes transcriptome kinetics. Specifically, when transcription changes are counter-acted with changes in mRNA stability, transient fast-relaxing transcriptome kinetics is observed. A possible molecular mechanism underlying such coordinated regulation might lay in two RNA polymerase (Pol II subunits, Rpb4 and Rpb7, which are recruited to mRNAs during transcription and later affect their degradation in the cytoplasm. Here we used a yeast strain carrying a mutant Pol II which poorly recruits these subunits. We show that this mutant strain is impaired in its ability to modulate mRNA stability in response to stress. The normal negative coordinated regulation is lost in the mutant, resulting in abnormal transcriptome profiles both with respect to magnitude and kinetics of responses. These results reveal an important role for Pol II, in regulation of both mRNA synthesis and degradation, and also in coordinating between them. We propose a simple model for production-degradation coupling that accounts for our observations. The model shows how a simple manipulation of the rates of co-transcriptional mRNA imprinting by Pol II may govern genome-wide transcriptome kinetics in response to environmental changes.

  12. Specific interaction between DNA polymerase II (PolD) and RadB, a Rad51/Dmc1 homolog, in Pyrococcus furiosus.

    Science.gov (United States)

    Hayashi, I; Morikawa, K; Ishino, Y

    1999-12-15

    Pyrococcus furiosus has an operon containing the DNA polymerase II (PolD) gene and three other genes. Using a two-hybrid screening to examine the interactions of the proteins encoded by the operon, we identified a specific interaction between the second subunit of PolD (DP1) and a Rad51/Dmc1 homologous protein (RadB). To ensure the specific interaction between these two proteins, each gene in the operon was expressed in Escherichia coli or insect cells separately and the products were purified. The in vitro analyses using the purified proteins also showed the interaction between DP1 and RadB. The deletion mutant analysis of DP1 revealed that a region important for binding with RadB is located in the central part of the sequence (amino acid residues 206-498). This region has an overlap to the C-terminal half (amino acids 334-613), which is highly conserved among euryarchaeal DP1s and is essential for the activity of PolD. Our results suggest that, although RadB does not noticeably affect the primer extension ability of PolD in vitro, PolD may utilize the RadB protein in DNA synthesis under certain conditions.

  13. Arabidopsis Pol II-Dependent in Vitro Transcription System Reveals Role of Chromatin for Light-Inducible rbcS Gene Transcription1

    Science.gov (United States)

    Ido, Ayaka; Iwata, Shinya; Iwata, Yuka; Igarashi, Hisako; Hamada, Takahiro; Sonobe, Seiji; Sugiura, Masahiro; Yukawa, Yasushi

    2016-01-01

    In vitro transcription is an essential tool to study the molecular mechanisms of transcription. For over a decade, we have developed an in vitro transcription system from tobacco (Nicotiana tabacum)-cultured cells (BY-2), and this system supported the basic activities of the three RNA polymerases (Pol I, Pol II, and Pol III). However, it was not suitable to study photosynthetic genes, because BY-2 cells have lost their photosynthetic activity. Therefore, Arabidopsis (Arabidopsis thaliana) in vitro transcription systems were developed from green and etiolated suspension cells. Sufficient in vitro Pol II activity was detected after the minor modification of the nuclear soluble extracts preparation method; removal of vacuoles from protoplasts and L-ascorbic acid supplementation in the extraction buffer were particularly effective. Surprisingly, all four Arabidopsis Rubisco small subunit (rbcS-1A, rbcS-1B, rbcS-2B, and rbcS-3B) gene members were in vitro transcribed from the naked DNA templates without any light-dependent manner. However, clear light-inducible transcriptions were observed using chromatin template of rbcS-1A gene, which was prepared with a human nucleosome assembly protein 1 (hNAP1) and HeLa histones. This suggested that a key determinant of light-dependency through the rbcS gene transcription was a higher order of DNA structure (i.e. chromatin). PMID:26662274

  14. Identifying Coevolving Partners from Paralogous Gene Families

    Directory of Open Access Journals (Sweden)

    Chen-Hsiang Yeang

    2008-01-01

    Full Text Available Many methods have been developed to detect coevolution from aligned sequences. However, all the existing methods require a one-to-one mapping of candidate coevolving partners (nucleotides, amino acids a priori. When two families of sequences have distinct duplication and loss histories, finding the one-to-one mapping of coevolving partners can be computationally involved. We propose an algorithm to identify the coevolving partners from two families of sequences with distinct phylogenetic trees. The algorithm maps each gene tree to a reference species tree, and builds a joint state of sequence composition and assignments of coevolving partners for each species tree node. By applying dynamic programming on the joint states, the optimal assignments can be identified. Time complexity is quadratic to the size of the species tree, and space complexity is exponential to the maximum number of gene tree nodes mapped to the same species tree node. Analysis on both simulated data and Pfam protein domain sequences demonstrates that the paralog coevolution algorithm picks up the coevolving partners with 60%–88% accuracy. This algorithm extends phylogeny-based coevolutionary models and make them applicable to a wide range of problems such as predicting protein-protein, protein-DNA and DNA-RNA interactions of two distinct families of sequences.

  15. DNA damage regulates alternative splicing through changes in POL II elongation

    International Nuclear Information System (INIS)

    Munoz, M.J.; Perez Santangelo, M.S.; De la Mata, M.; Kornblihtt, A.R.

    2008-01-01

    Many apoptotic genes are regulated via alternative splicing (AS) but little is known about the mechanisms controlling AS in stress situations derived from DNA damage. Here we show that ultraviolet (UV) radiation affects co-transcriptional, but not post transcriptional, AS through a systemic mechanism involving a CDK-9-dependent hyper phosphorylation of RNA polymerase II carboxy terminal domain (CTD) and a subsequent and unprecedented inhibition of transcriptional elongation, estimated in vivo and in real time by FRAP. To mimic this hyper phosphorylation we used CTD mutants with serines 2 or 5 substituted by glutamic acids and found that they not only display lower elongation rates but duplicate the effects of UV light on AS in the absence of irradiation. Consistently, substitution of the serines with alanines prevents the UV effect on splicing. These results represent the first in vivo proof of modulation of elongation in response to an environmental signal, affecting in turn the kinetic coupling between transcription and splicing. (authors)

  16. Function of Rad51 paralogs in eukaryotic homologous recombinational repair

    International Nuclear Information System (INIS)

    Liu, N.; Skowronek, K.

    2003-01-01

    Full text: Homologous recombinational repair (HRR) is an important mechanism for maintaining genetic integrity and cancer prevention by accurately repair of DNA double strand breaks induced by environmental insults or occurred in DNA replication. A critical step in HRR is the polymerization of Rad51 on single stranded DNA to form nuclear protein filaments, the later conduct DNA strand paring and exchange between homologous strands. A number of proteins, including replication protein A (RPA), Rad52 and Rad51 paralogs, are suggested to modulate or facilitate the process of Rad51 filament formation. Five Rad51 paralogs, namely XRCC2, XRCC3, Rad51B, Rad51C and Rad51D have been identified in eucaryotic cells. These proteins show distant protein sequence identity to Rad51, to yeast Rad51 paralogs (Rad55 and Rad57) and to each other. Hamster or chicken mutants of Rad51 paralogs exhibit hypersensitivity to a variety of DNA damaging agents, especially cross-linking agents, and are defective in assembly of Rad51 onto HRR site after DNA damage. Recent data from our and other labs showed that Rad51 paralogs constitute two distinct complexes in cell extracts, one contains XRCC2, Rad51B, Rad51C and Rad51D, and the other contains Rad51C and XRCC3. Rad51C is involved in both complexes. Our results also showed that XRCC3-Rad51C complex interacts with Rad51 in vivo. Furthermore, overexpression of Rad52 can partially suppress the hypersensitivity of XRCC2 mutant irs1 to ionizing radiation and corrected the defects in Rad51 focus formation. These results suggest that XRCC2 and other Rad51 paralogs play a mediator function to Rad51 in the early stage of HRR

  17. Autoridades locales y partidos políticos en Andalucía durante la II República

    Directory of Open Access Journals (Sweden)

    OCTAVIO RUIZ MANJÓN

    1979-01-01

    Full Text Available Se presenta una tentativa de análisis del comportamiento de los gobernadores provinciales andaluces en su relación con las organizaciones políticas locales entre los años 1931 y 1936. Se establecen vínculos entre tales comportamientos y la sucesión de eventos políticos nacionales y locales. Para ello se emplea la información disponible en la Gaceta de Madrid (el órgano oficial español de la administración pública, así como recortes de la prensa local procedente de las ochos provincias andaluzas. Se analiza la estabilidad de los gobiernos en el ejercicio de sus responsabilidades mediante la comparación del promedio general presentado por cada provincia. Se comparan las fluctuaciones entre los porcentajes con las fluctuaciones generales que tienen lugar en la vida política en cada período considerado. Se concluye que la vida política local, su estructura organizativa y los sucesos que en ella acaecen tienen escasa influencia en la elección y estabilidad de los gobernantes.

  18. Arabidopsis small ubiquitin-like modifier paralogs have distinct functions in development and defense

    NARCIS (Netherlands)

    van den Burg, H.A.; Kini, R.K.; Schuurink, R.C.; Takken, F.L.W.

    2010-01-01

    Posttranslational modifications allow dynamic and reversible changes to protein function. In Arabidopsis thaliana, a small gene family encodes paralogs of the small ubiquitin-like posttranslational modifier. We studied the function of these paralogs. Single mutants of the SUM1 and SUM2 paralogs do

  19. TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF.

    Directory of Open Access Journals (Sweden)

    Hannah E Seberg

    2017-03-01

    Full Text Available Mutations in the gene encoding transcription factor TFAP2A result in pigmentation anomalies in model organisms and premature hair graying in humans. However, the pleiotropic functions of TFAP2A and its redundantly-acting paralogs have made the precise contribution of TFAP2-type activity to melanocyte differentiation unclear. Defining this contribution may help to explain why TFAP2A expression is reduced in advanced-stage melanoma compared to benign nevi. To identify genes with TFAP2A-dependent expression in melanocytes, we profile zebrafish tissue and mouse melanocytes deficient in Tfap2a, and find that expression of a small subset of genes underlying pigmentation phenotypes is TFAP2A-dependent, including Dct, Mc1r, Mlph, and Pmel. We then conduct TFAP2A ChIP-seq in mouse and human melanocytes and find that a much larger subset of pigmentation genes is associated with active regulatory elements bound by TFAP2A. These elements are also frequently bound by MITF, which is considered the "master regulator" of melanocyte development. For example, the promoter of TRPM1 is bound by both TFAP2A and MITF, and we show that the activity of a minimal TRPM1 promoter is lost upon deletion of the TFAP2A binding sites. However, the expression of Trpm1 is not TFAP2A-dependent, implying that additional TFAP2 paralogs function redundantly to drive melanocyte differentiation, which is consistent with previous results from zebrafish. Paralogs Tfap2a and Tfap2b are both expressed in mouse melanocytes, and we show that mouse embryos with Wnt1-Cre-mediated deletion of Tfap2a and Tfap2b in the neural crest almost completely lack melanocytes but retain neural crest-derived sensory ganglia. These results suggest that TFAP2 paralogs, like MITF, are also necessary for induction of the melanocyte lineage. Finally, we observe a genetic interaction between tfap2a and mitfa in zebrafish, but find that artificially elevating expression of tfap2a does not increase levels of

  20. NADPH-Cytochrome P450 Reductase: Molecular Cloning and Functional Characterization of Two Paralogs from Withania somnifera (L.) Dunal

    Science.gov (United States)

    Rana, Satiander; Lattoo, Surrinder K.; Dhar, Niha; Razdan, Sumeer; Bhat, Wajid Waheed; Dhar, Rekha S.; Vishwakarma, Ram

    2013-01-01

    Withania somnifera (L.) Dunal, a highly reputed medicinal plant, synthesizes a large array of steroidal lactone triterpenoids called withanolides. Although its chemical profile and pharmacological activities have been studied extensively during the last two decades, limited attempts have been made to decipher the biosynthetic route and identification of key regulatory genes involved in withanolide biosynthesis. Cytochrome P450 reductase is the most imperative redox partner of multiple P450s involved in primary and secondary metabolite biosynthesis. We describe here the cloning and characterization of two paralogs of cytochrome P450 reductase from W. somnifera. The full length paralogs of WsCPR1 and WsCPR2 have open reading frames of 2058 and 2142 bp encoding 685 and 713 amino acid residues, respectively. Phylogenetic analysis demonstrated that grouping of dual CPRs was in accordance with class I and class II of eudicotyledon CPRs. The corresponding coding sequences were expressed in Escherichia coli as glutathione-S-transferase fusion proteins, purified and characterized. Recombinant proteins of both the paralogs were purified with their intact membrane anchor regions and it is hitherto unreported for other CPRs which have been purified from microsomal fraction. Southern blot analysis suggested that two divergent isoforms of CPR exist independently in Withania genome. Quantitative real-time PCR analysis indicated that both genes were widely expressed in leaves, stalks, roots, flowers and berries with higher expression level of WsCPR2 in comparison to WsCPR1. Similar to CPRs of other plant species, WsCPR1 was un-inducible while WsCPR2 transcript level increased in a time-dependent manner after elicitor treatments. High performance liquid chromatography of withanolides extracted from elicitor-treated samples showed a significant increase in two of the key withanolides, withanolide A and withaferin A, possibly indicating the role of WsCPR2 in withanolide biosynthesis

  1. Roquin Paralogs Differentially Regulate Functional NKT Cell Subsets.

    Science.gov (United States)

    Drees, Christoph; Vahl, J Christoph; Bortoluzzi, Sabrina; Heger, Klaus D; Fischer, Julius C; Wunderlich, F Thomas; Peschel, Christian; Schmidt-Supprian, Marc

    2017-04-01

    NKT cells represent a small subset of glycolipid-recognizing T cells that are heavily implicated in human allergic, autoimmune, and malignant diseases. In the thymus, precursor cells recognize self-glycolipids by virtue of their semi-invariant TCR, which triggers NKT cell lineage commitment and maturation. During their development, NKT cells are polarized into the NKT1, NKT2, and NKT17 subsets, defined through their cytokine-secretion patterns and the expression of key transcription factors. However, we have largely ignored how the differentiation into the NKT cell subsets is regulated. In this article, we describe the mRNA-binding Roquin-1 and -2 proteins as central regulators of murine NKT cell fate decisions. In the thymus, T cell-specific ablation of the Roquin paralogs leads to a dramatic expansion of NKT17 cells, whereas peripheral mature NKT cells are essentially absent. Roquin-1/2-deficient NKT17 cells show exaggerated lineage-specific expression of nearly all NKT17-defining proteins tested. We show through mixed bone marrow chimera experiments that NKT17 polarization is mediated through cell-intrinsic mechanisms early during NKT cell development. In contrast, the loss of peripheral NKT cells is due to cell-extrinsic factors. Surprisingly, Roquin paralog-deficient NKT cells are, in striking contrast to conventional T cells, compromised in their ability to secrete cytokines. Altogether, we show that Roquin paralogs regulate the development and function of NKT cell subsets in the thymus and periphery. Copyright © 2017 by The American Association of Immunologists, Inc.

  2. Gene conversion homogenizes the CMT1A paralogous repeats

    Directory of Open Access Journals (Sweden)

    Hurles Matthew E

    2001-12-01

    Full Text Available Abstract Background Non-allelic homologous recombination between paralogous repeats is increasingly being recognized as a major mechanism causing both pathogenic microdeletions and duplications, and structural polymorphism in the human genome. It has recently been shown empirically that gene conversion can homogenize such repeats, resulting in longer stretches of absolute identity that may increase the rate of non-allelic homologous recombination. Results Here, a statistical test to detect gene conversion between pairs of non-coding sequences is presented. It is shown that the 24 kb Charcot-Marie-Tooth type 1A paralogous repeats (CMT1A-REPs exhibit the imprint of gene conversion processes whilst control orthologous sequences do not. In addition, Monte Carlo simulations of the evolutionary divergence of the CMT1A-REPs, incorporating two alternative models for gene conversion, generate repeats that are statistically indistinguishable from the observed repeats. Bounds are placed on the rate of these conversion processes, with central values of 1.3 × 10-4 and 5.1 × 10-5 per generation for the alternative models. Conclusions This evidence presented here suggests that gene conversion may have played an important role in the evolution of the CMT1A-REP paralogous repeats. The rates of these processes are such that it is probable that homogenized CMT1A-REPs are polymorphic within modern populations. Gene conversion processes are similarly likely to play an important role in the evolution of other segmental duplications and may influence the rate of non-allelic homologous recombination between them.

  3. Functional plasticity of paralogous diterpene synthases involved in conifer defense.

    Science.gov (United States)

    Keeling, Christopher I; Weisshaar, Sabrina; Lin, Roy P C; Bohlmann, Jörg

    2008-01-22

    The diversity of terpenoid compounds produced by plants plays an important role in mediating various plant-herbivore, plant-pollinator, and plant-pathogen interactions. This diversity has resulted from gene duplication and neofunctionalization of the enzymes that synthesize and subsequently modify terpenes. Two diterpene synthases in Norway spruce (Picea abies), isopimaradiene synthase and levopimaradiene/abietadiene synthase, provide the hydrocarbon precursors for most of the diterpene resin acids found in the defensive oleoresin of conifers. Although these paralogous enzymes are 91% identical at the amino acid level, one is a single-product enzyme, whereas the other is a multiproduct enzyme that forms completely different products. We used a rational approach of homology modeling, protein sequence comparison, domain swapping, and a series of reciprocal site-directed mutagenesis to identify the specific residues that direct the different product outcomes. A one-amino acid mutation switched the levopimaradiene/abietadiene synthase into producing isopimaradiene and sandaracopimaradiene and none of its normal products. Four mutations were sufficient to reciprocally reverse the product profiles for both of these paralogous enzymes while maintaining catalytic efficiencies similar to the wild-type enzymes. This study illustrates how neofunctionalization can result from relatively minor changes in protein sequence, increasing the diversity of secondary metabolites important for conifer defense.

  4. Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.

    Directory of Open Access Journals (Sweden)

    Nadezda Kryuchkova-Mostacci

    2016-12-01

    Full Text Available The ortholog conjecture implies that functional similarity between orthologous genes is higher than between paralogs. It has been supported using levels of expression and Gene Ontology term analysis, although the evidence was rather weak and there were also conflicting reports. In this study on 12 species we provide strong evidence of high conservation in tissue-specificity between orthologs, in contrast to low conservation between within-species paralogs. This allows us to shed a new light on the evolution of gene expression patterns. While there have been several studies of the correlation of expression between species, little is known about the evolution of tissue-specificity itself. Ortholog tissue-specificity is strongly conserved between all tetrapod species, with the lowest Pearson correlation between mouse and frog at r = 0.66. Tissue-specificity correlation decreases strongly with divergence time. Paralogs in human show much lower conservation, even for recent Primate-specific paralogs. When both paralogs from ancient whole genome duplication tissue-specific paralogs are tissue-specific, it is often to different tissues, while other tissue-specific paralogs are mostly specific to the same tissue. The same patterns are observed using human or mouse as focal species, and are robust to choices of datasets and of thresholds. Our results support the following model of evolution: in the absence of duplication, tissue-specificity evolves slowly, and tissue-specific genes do not change their main tissue of expression; after small-scale duplication the less expressed paralog loses the ancestral specificity, leading to an immediate difference between paralogs; over time, both paralogs become more broadly expressed, but remain poorly correlated. Finally, there is a small number of paralog pairs which stay tissue-specific with the same main tissue of expression, for at least 300 million years.

  5. Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana.

    Science.gov (United States)

    Hoffmann, Robert D; Palmgren, Michael

    2016-06-13

    Whole-genome duplications in the ancestors of many diverse species provided the genetic material for evolutionary novelty. Several models explain the retention of paralogous genes. However, how these models are reflected in the evolution of coding and non-coding sequences of paralogous genes is unknown. Here, we analyzed the coding and non-coding sequences of paralogous genes in Arabidopsis thaliana and compared these sequences with those of orthologous genes in Arabidopsis lyrata. Paralogs with lower expression than their duplicate had more nonsynonymous substitutions, were more likely to fractionate, and exhibited less similar expression patterns with their orthologs in the other species. Also, lower-expressed genes had greater tissue specificity. Orthologous conserved non-coding sequences in the promoters, introns, and 3' untranslated regions were less abundant at lower-expressed genes compared to their higher-expressed paralogs. A gene ontology (GO) term enrichment analysis showed that paralogs with similar expression levels were enriched in GO terms related to ribosomes, whereas paralogs with different expression levels were enriched in terms associated with stress responses. Loss of conserved non-coding sequences in one gene of a paralogous gene pair correlates with reduced expression levels that are more tissue specific. Together with increased mutation rates in the coding sequences, this suggests that similar forces of purifying selection act on coding and non-coding sequences. We propose that coding and non-coding sequences evolve concurrently following gene duplication.

  6. Recessive Cancer Genes Engage in Negative Genetic Interactions with Their Functional Paralogs

    Directory of Open Access Journals (Sweden)

    Matteo D’Antonio

    2013-12-01

    Full Text Available Cancer genetic heterogeneity offers a wide repertoire of molecular determinants to be screened as therapeutic targets. Here, we identify potential anticancer targets by exploiting negative genetic interactions between genes with driver loss-of-function mutations (recessive cancer genes and their functionally redundant paralogs. We identify recessive genes with additional copies and experimentally test our predictions on three paralogous pairs. We confirm digenic negative interactions between two cancer genes (SMARCA4 and CDH1 and their corresponding paralogs (SMARCA2 and CDH3. Furthermore, we identify a trigenic negative interaction between the cancer gene DNMT3A, its functional paralog DNMT3B, and a third gene, DNMT1, which encodes the only other human DNA-methylase domain. Although our study does not exclude other causes of synthetic lethality, it suggests that functionally redundant paralogs of cancer genes could be targets in anticancer therapy.

  7. Paralogous Genes as a Tool to Study the Regulation of Gene Expression

    DEFF Research Database (Denmark)

    Hoffmann, Robert D

    their duplicate were found to be under less purifying selection. A gene ontology (GO) term enrichment analysis showed that paralogs with similar expression levels were enriched in GO terms related to macromolecular complexes, whereas paralogs with different expression levels were enriched in terms associated...... new functions, or their gene products are in a dosage balance. Regulatory DNA elements - some of which are conserved across species and hence called conserved non-coding sequences (CNSs) - that control expression of duplicated genes are thus under similar purifying selection. In the present study, I...... have performed in-depth analyses of paralogous genes in Arabidopsis thaliana, their expression profile, their sequence conservation, and their functions, in order to investigate the relationship between gene expression and retention of paralogous genes. Paralogs with lower expression than...

  8. Global gene expression analysis of fission yeast mutants impaired in Ser-2 phosphorylation of the RNA pol II carboxy terminal domain.

    Directory of Open Access Journals (Sweden)

    Reza Saberianfar

    Full Text Available In Schizosaccharomyces pombe the nuclear-localized Lsk1p-Lsc1p cyclin dependent kinase complex promotes Ser-2 phosphorylation of the heptad repeats found within the RNA pol II carboxy terminal domain (CTD. Here, we first provide evidence supporting the existence of a third previously uncharacterized Ser-2 CTD kinase subunit, Lsg1p. As expected for a component of the complex, Lsg1p localizes to the nucleus, promotes Ser-2 phosphorylation of the CTD, and physically interacts with both Lsk1p and Lsc1p in vivo. Interestingly, we also demonstrate that lsg1Δ mutants--just like lsk1Δ and lsc1Δ strains--are compromised in their ability to faithfully and reliably complete cytokinesis. Next, to address whether kinase mediated alterations in CTD phosphorylation might selectively alter the expression of genes with roles in cytokinesis and/or the cytoskeleton, global gene expression profiles were analyzed. Mutants impaired in Ser-2 phosphorylation display little change with respect to the level of transcription of most genes. However, genes affecting cytokinesis--including the actin interacting protein gene, aip1--as well as genes with roles in meiosis, are included in a small subset that are differentially regulated. Significantly, genetic analysis of lsk1Δ aip1Δ double mutants is consistent with Lsk1p and Aip1p acting in a linear pathway with respect to the regulation of cytokinesis.

  9. IX Congreso Nacional y II Congreso Internacional sobre Democracia: “Los senderos de la democracia en América Latina: Estado, Sociedad Civil y Cambio Político”. Rosario, Argentina, del 18 al 21 de octubre de 2010

    OpenAIRE

    Bartolacci, Franco

    2010-01-01

    Reseña del X Congreso Nacional y II Congreso Internacional sobre Democracia: “Los senderos de la democracia en América Latina: Estado, Sociedad Civil y Cambio Político” Rosario, Argentina, del 18 al 21 de octubre de 2010 Organizado por Facultad de Ciencia Política y Relaciones Internacionales de la Universidad Nacional de Rosario

  10. Differential paralog divergence modulates genome evolution across yeast species

    Science.gov (United States)

    Lynch, Bryony; Huang, Mei; Alcantara, Erica; DeSevo, Christopher G.; Pai, Dave A.; Hoang, Margaret L.

    2017-01-01

    Evolutionary outcomes depend not only on the selective forces acting upon a species, but also on the genetic background. However, large timescales and uncertain historical selection pressures can make it difficult to discern such important background differences between species. Experimental evolution is one tool to compare evolutionary potential of known genotypes in a controlled environment. Here we utilized a highly reproducible evolutionary adaptation in Saccharomyces cerevisiae to investigate whether experimental evolution of other yeast species would select for similar adaptive mutations. We evolved populations of S. cerevisiae, S. paradoxus, S. mikatae, S. uvarum, and interspecific hybrids between S. uvarum and S. cerevisiae for ~200–500 generations in sulfate-limited continuous culture. Wild-type S. cerevisiae cultures invariably amplify the high affinity sulfate transporter gene, SUL1. However, while amplification of the SUL1 locus was detected in S. paradoxus and S. mikatae populations, S. uvarum cultures instead selected for amplification of the paralog, SUL2. We measured the relative fitness of strains bearing deletions and amplifications of both SUL genes from different species, confirming that, converse to S. cerevisiae, S. uvarum SUL2 contributes more to fitness in sulfate limitation than S. uvarum SUL1. By measuring the fitness and gene expression of chimeric promoter-ORF constructs, we were able to delineate the cause of this differential fitness effect primarily to the promoter of S. uvarum SUL1. Our data show evidence of differential sub-functionalization among the sulfate transporters across Saccharomyces species through recent changes in noncoding sequence. Furthermore, these results show a clear example of how such background differences due to paralog divergence can drive changes in genome evolution. PMID:28196070

  11. Live-cell Imaging of Pol II Promoter Activity to Monitor Gene expression with RNA IMAGEtag reporters

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Ilchung [Ames Laboratory; Ray, Judhajeet [Ames Laboratory; Gupta, Vinayak [Iowa State University; Ilgu, Muslum [Ames Laboratory; Beasley, Jonathan [Iowa State University; Bendickson, Lee [Ames Laboratory; Mehanovic, Samir [Molecular Express; Kraus, George A. [Iowa State University; Nilsen-Hamilton, Marit [Ames Laboratory

    2014-04-20

    We describe a ribonucleic acid (RNA) reporter system for live-cell imaging of gene expression to detect changes in polymerase II activity on individual promoters in individual cells. The reporters use strings of RNA aptamers that constitute IMAGEtags (Intracellular MultiAptamer GEnetic tags) that can be expressed from a promoter of choice. For imaging, the cells are incubated with their ligands that are separately conjugated with one of the FRET pair, Cy3 and Cy5. The IMAGEtags were expressed in yeast from the GAL1, ADH1 or ACT1 promoters. Transcription from all three promoters was imaged in live cells and transcriptional increases from the GAL1 promoter were observed with time after adding galactose. Expression of the IMAGEtags did not affect cell proliferation or endogenous gene expression. Advantages of this method are that no foreign proteins are produced in the cells that could be toxic or otherwise influence the cellular response as they accumulate, the IMAGEtags are short lived and oxygen is not required to generate their signals. The IMAGEtag RNA reporter system provides a means of tracking changes in transcriptional activity in live cells and in real time.

  12. HYPOTHESIS: PARALOG FORMATION FROM PROGENITOR PROTEINS AND PARALOG MUTAGENESIS SPUR THE RAPID EVOLUTION OF TELOMERE BINDING PROTEINS

    Directory of Open Access Journals (Sweden)

    Arthur J Lustig

    2016-02-01

    Full Text Available Through elegant studies in fungal cells and complex organisms, we propose a unifying paradigm for the rapid evolution of telomere binding proteins (TBPs that associate with either (or both telomeric DNA and telomeric proteins. TBPs protect and regulate telomere structure and function. Four critical factors are involved. First, TBPs that commonly bind to telomeric DNA include the c-Myb binding proteins, OB-fold single-stranded binding proteins, and G-G base paired Hoogsteen structure (G4 binding proteins. Each contributes independently or, in some cases, cooperatively, to provide a minimum level of telomere function. As a result of these minimal requirements and the great abundance of homologs of these motifs in the proteome, DNA telomere-binding activity may be generated more easily than expected. Second, telomere dysfunction gives rise to genome instability, through the elevation of recombination rates, genome ploidy, and the frequency of gene mutations. The formation of paralogs that diverge from their progenitor proteins ultimately can form a high frequency of altered TBPs with altered functions. Third, TBPs that assemble into complexes (e.g. mammalian shelterin derive benefits from the novel emergent functions. Fourth, a limiting factor in the evolution of TBP complexes is the formation of mutually compatible interaction surfaces amongst the TBPs. These factors may have different degrees of importance in the evolution of different phyla, illustrated by the apparently simpler telomeres in complex plants. Selective pressures that can utilize the mechanisms of paralog formation and mutagenesis to drive TBP evolution along routes dependent on the requisite physiologic changes.

  13. NADPH-cytochrome P450 reductase: molecular cloning and functional characterization of two paralogs from Withania somnifera (L. dunal.

    Directory of Open Access Journals (Sweden)

    Satiander Rana

    Full Text Available Withania somnifera (L. Dunal, a highly reputed medicinal plant, synthesizes a large array of steroidal lactone triterpenoids called withanolides. Although its chemical profile and pharmacological activities have been studied extensively during the last two decades, limited attempts have been made to decipher the biosynthetic route and identification of key regulatory genes involved in withanolide biosynthesis. Cytochrome P450 reductase is the most imperative redox partner of multiple P450s involved in primary and secondary metabolite biosynthesis. We describe here the cloning and characterization of two paralogs of cytochrome P450 reductase from W. somnifera. The full length paralogs of WsCPR1 and WsCPR2 have open reading frames of 2058 and 2142 bp encoding 685 and 713 amino acid residues, respectively. Phylogenetic analysis demonstrated that grouping of dual CPRs was in accordance with class I and class II of eudicotyledon CPRs. The corresponding coding sequences were expressed in Escherichia coli as glutathione-S-transferase fusion proteins, purified and characterized. Recombinant proteins of both the paralogs were purified with their intact membrane anchor regions and it is hitherto unreported for other CPRs which have been purified from microsomal fraction. Southern blot analysis suggested that two divergent isoforms of CPR exist independently in Withania genome. Quantitative real-time PCR analysis indicated that both genes were widely expressed in leaves, stalks, roots, flowers and berries with higher expression level of WsCPR2 in comparison to WsCPR1. Similar to CPRs of other plant species, WsCPR1 was un-inducible while WsCPR2 transcript level increased in a time-dependent manner after elicitor treatments. High performance liquid chromatography of withanolides extracted from elicitor-treated samples showed a significant increase in two of the key withanolides, withanolide A and withaferin A, possibly indicating the role of WsCPR2 in

  14. Non-coding RNA derived from the region adjacent to the human HO-1 E2 enhancer selectively regulates HO-1 gene induction by modulating Pol II binding.

    Science.gov (United States)

    Maruyama, Atsushi; Mimura, Junsei; Itoh, Ken

    2014-12-16

    Recent studies have disclosed the function of enhancer RNAs (eRNAs), which are long non-coding RNAs transcribed from gene enhancer regions, in transcriptional regulation. However, it remains unclear whether eRNAs are involved in the regulation of human heme oxygenase-1 gene (HO-1) induction. Here, we report that multiple nuclear-enriched eRNAs are transcribed from the regions adjacent to two human HO-1 enhancers (i.e. the distal E2 and proximal E1 enhancers), and some of these eRNAs are induced by the oxidative stress-causing reagent diethyl maleate (DEM). We demonstrated that the expression of one forward direction (5' to 3') eRNA transcribed from the human HO-1 E2 enhancer region (named human HO-1enhancer RNA E2-3; hereafter called eRNA E2-3) was induced by DEM in an NRF2-dependent manner in HeLa cells. Conversely, knockdown of BACH1, a repressor of HO-1 transcription, further increased DEM-inducible eRNA E2-3 transcription as well as HO-1 expression. In addition, we showed that knockdown of eRNA E2-3 selectively down-regulated DEM-induced HO-1 expression. Furthermore, eRNA E2-3 knockdown attenuated DEM-induced Pol II binding to the promoter and E2 enhancer regions of HO-1 without affecting NRF2 recruitment to the E2 enhancer. These findings indicate that eRNAE2-3 is functional and is required for HO-1 induction. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  15. Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea

    Directory of Open Access Journals (Sweden)

    Leigh John A

    2009-08-01

    Full Text Available Abstract Background Methanogenesis is the sole means of energy production in methanogenic Archaea. H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd catalyzes a step in the hydrogenotrophic methanogenesis pathway in class I methanogens. At least one hmd paralog has been identified in nine of the eleven complete genome sequences of class I hydrogenotrophic methanogens. The products of these paralog genes have thus far eluded any detailed functional characterization. Results Here we present a thorough computational analysis of Hmd enzymes and paralogs that includes state of the art phylogenetic inference, structure prediction, and functional site prediction techniques. We determine that the Hmd enzymes are phylogenetically distinct from Hmd paralogs but share a common overall structure. We predict that the active site of the Hmd enzyme is conserved as a functional site in Hmd paralogs and use this observation to propose possible molecular functions of the paralog that are consistent with previous experimental evidence. We also identify an uncharacterized site in the N-terminal domains of both proteins that is predicted by our methods to directly impart function. Conclusion This study contributes to our understanding of the evolutionary history, structural conservation, and functional roles, of the Hmd enzymes and paralogs. The results of our phylogenetic and structural analysis constitute datasets that will aid in the future study of the Hmd protein family. Our functional site predictions generate several testable hypotheses that will guide further experimental characterization of the Hmd paralog. This work also represents a novel approach to protein function prediction in which multiple computational methods are integrated to achieve a detailed characterization of proteins that are not well understood.

  16. ChIP-seq and ChIP-exo profiling of Pol II, H2A.Z, and H3K4me3 in human K562 cells

    Science.gov (United States)

    McHaourab, Zenab F.; Perreault, Andrea A.; Venters, Bryan J.

    2018-03-01

    The human K562 chronic myeloid leukemia cell line has long served as an experimental paradigm for functional genomic studies. To systematically and functionally annotate the human genome, the ENCODE consortium generated hundreds of functional genomic data sets, such as chromatin immunoprecipitation coupled to sequencing (ChIP-seq). While ChIP-seq analyses have provided tremendous insights into gene regulation, spatiotemporal insights were limited by a resolution of several hundred base pairs. ChIP-exonuclease (ChIP-exo) is a refined version of ChIP-seq that overcomes this limitation by providing higher precision mapping of protein-DNA interactions. To study the interplay of transcription initiation and chromatin, we profiled the genome-wide locations for RNA polymerase II (Pol II), the histone variant H2A.Z, and the histone modification H3K4me3 using ChIP-seq and ChIP-exo. In this Data Descriptor, we present detailed information on parallel experimental design, data generation, quality control analysis, and data validation. We discuss how these data lay the foundation for future analysis to understand the relationship between the occupancy of Pol II and nucleosome positions at near base pair resolution.

  17. ChIP-seq and ChIP-exo profiling of Pol II, H2A.Z, and H3K4me3 in human K562 cells.

    Science.gov (United States)

    Mchaourab, Zenab F; Perreault, Andrea A; Venters, Bryan J

    2018-03-06

    The human K562 chronic myeloid leukemia cell line has long served as an experimental paradigm for functional genomic studies. To systematically and functionally annotate the human genome, the ENCODE consortium generated hundreds of functional genomic data sets, such as chromatin immunoprecipitation coupled to sequencing (ChIP-seq). While ChIP-seq analyses have provided tremendous insights into gene regulation, spatiotemporal insights were limited by a resolution of several hundred base pairs. ChIP-exonuclease (ChIP-exo) is a refined version of ChIP-seq that overcomes this limitation by providing higher precision mapping of protein-DNA interactions. To study the interplay of transcription initiation and chromatin, we profiled the genome-wide locations for RNA polymerase II (Pol II), the histone variant H2A.Z, and the histone modification H3K4me3 using ChIP-seq and ChIP-exo. In this Data Descriptor, we present detailed information on parallel experimental design, data generation, quality control analysis, and data validation. We discuss how these data lay the foundation for future analysis to understand the relationship between the occupancy of Pol II and nucleosome positions at near base pair resolution.

  18. The impact of paralogy on phylogenomic studies - a case study on annelid relationships.

    Directory of Open Access Journals (Sweden)

    Torsten H Struck

    Full Text Available Phylogenomic studies based on hundreds of genes derived from expressed sequence tags libraries are increasingly used to reveal the phylogeny of taxa. A prerequisite for these studies is the assignment of genes into clusters of orthologous sequences. Sophisticated methods of orthology prediction are used in such analyses, but it is rarely assessed whether paralogous sequences have been erroneously grouped together as orthologous sequences after the prediction, and whether this had an impact on the phylogenetic reconstruction using a super-matrix approach. Herein, I tested the impact of paralogous sequences on the reconstruction of annelid relationships based on phylogenomic datasets. Using single-partition analyses, screening for bootstrap support, blast searches and pruning of sequences in the supermatrix, wrongly assigned paralogous sequences were found in eight partitions and the placement of five taxa (the annelids Owenia, Scoloplos, Sthenelais and Eurythoe and the nemertean Cerebratulus including the robust bootstrap support could be attributed to the presence of paralogous sequences in two partitions. Excluding these sequences resulted in a different, weaker supported placement for these taxa. Moreover, the analyses revealed that paralogous sequences impacted the reconstruction when only a single taxon represented a previously supported higher taxon such as a polychaete family. One possibility of a priori detection of wrongly assigned paralogous sequences could combine 1 a screening of single-partition analyses based on criteria such as nodal support or internal branch length with 2 blast searches of suspicious cases as presented herein. Also possible are a posteriori approaches in which support for specific clades is investigated by comparing alternative hypotheses based on differences in per-site likelihoods. Increasing the sizes of EST libraries will also decrease the likelihood of wrongly assigned paralogous sequences, and in the case

  19. Oct-2 forms a complex with Oct-1 on the iNOS promoter and represses transcription by interfering with recruitment of RNA PolII by Oct-1

    Science.gov (United States)

    Bentrari, Fatima; Chantôme, Aurelie; Knights, Andrew; Jeannin, Jean-François; Pance, Alena

    2015-01-01

    Oct-1 (POU2f1) and Oct-2 (POU2f2) are members of the POU family of transcription factors. They recognize the same DNA sequence but fulfil distinct functions: Oct-1 is ubiquitous and regulates a variety of genes while Oct-2 is restricted to B-cells and neurones. Here we examine the interplay and regulatory mechanisms of these factors to control the inducible nitric oxide synthase (iNOS, NOS2). Using two breast cancer cell lines as a comparative model, we found that MCF-7 express iNOS upon cytokine stimulation while MDA-MB-231 do not. Oct-1 is present in both cell lines but MDA-MB-231also express high levels of Oct-2. Manipulation of Oct-2 expression in these cell lines demonstrates that it is directly responsible for the repression of iNOS in MDA-MB-231. In MCF-7 cells Oct-1 binds the iNOS promoter, recruits RNA PolII and triggers initiation of transcription. In MDA-MB-231 cells, both Oct-1 and Oct-2 bind the iNOS promoter, forming a higher-order complex which fails to recruit RNA PolII, and as a consequence iNOS transcription does not proceed. Unravelling the mechanisms of transcription factor activity is paramount to the understanding of gene expression patterns that determine cell behaviour. PMID:26271992

  20. The Creatine Transporter Gene Paralogous at 16p11.2 Is Expressed in Human Brain

    Directory of Open Access Journals (Sweden)

    Nadia Bayou

    2008-01-01

    We report on the clinical, cytogenetic, and molecular findings in a boy with autism carrying a de novo translocation t(7;16(p22.1;p11.2. The chromosome 16 breakpoint disrupts the paralogous SLC6A8 gene also called SLC6A10 or CT2. Predicted translation of exons and RT-PCR analysis reveal specific expression of the creatine transporter paralogous in testis and brain. Several studies reported on the role of X-linked creatine transporter mutations in individuals with mental retardation, with or without autism. The existence of disruption in SLC6A8 paralogous gene associated with idiopathic autism suggests that this gene may be involved in the autistic phenotype in our patient.

  1. Investigating the effect of paralogs on microarray gene-set analysis

    Directory of Open Access Journals (Sweden)

    Seoighe Cathal

    2011-01-01

    Full Text Available Abstract Background In order to interpret the results obtained from a microarray experiment, researchers often shift focus from analysis of individual differentially expressed genes to analyses of sets of genes. These gene-set analysis (GSA methods use previously accumulated biological knowledge to group genes into sets and then aim to rank these gene sets in a way that reflects their relative importance in the experimental situation in question. We suspect that the presence of paralogs affects the ability of GSA methods to accurately identify the most important sets of genes for subsequent research. Results We show that paralogs, which typically have high sequence identity and similar molecular functions, also exhibit high correlation in their expression patterns. We investigate this correlation as a potential confounding factor common to current GSA methods using Indygene http://www.cbio.uct.ac.za/indygene, a web tool that reduces a supplied list of genes so that it includes no pairwise paralogy relationships above a specified sequence similarity threshold. We use the tool to reanalyse previously published microarray datasets and determine the potential utility of accounting for the presence of paralogs. Conclusions The Indygene tool efficiently removes paralogy relationships from a given dataset and we found that such a reduction, performed prior to GSA, has the ability to generate significantly different results that often represent novel and plausible biological hypotheses. This was demonstrated for three different GSA approaches when applied to the reanalysis of previously published microarray datasets and suggests that the redundancy and non-independence of paralogs is an important consideration when dealing with GSA methodologies.

  2. Investigating the effect of paralogs on microarray gene-set analysis

    LENUS (Irish Health Repository)

    Faure, Andre J

    2011-01-24

    Abstract Background In order to interpret the results obtained from a microarray experiment, researchers often shift focus from analysis of individual differentially expressed genes to analyses of sets of genes. These gene-set analysis (GSA) methods use previously accumulated biological knowledge to group genes into sets and then aim to rank these gene sets in a way that reflects their relative importance in the experimental situation in question. We suspect that the presence of paralogs affects the ability of GSA methods to accurately identify the most important sets of genes for subsequent research. Results We show that paralogs, which typically have high sequence identity and similar molecular functions, also exhibit high correlation in their expression patterns. We investigate this correlation as a potential confounding factor common to current GSA methods using Indygene http:\\/\\/www.cbio.uct.ac.za\\/indygene, a web tool that reduces a supplied list of genes so that it includes no pairwise paralogy relationships above a specified sequence similarity threshold. We use the tool to reanalyse previously published microarray datasets and determine the potential utility of accounting for the presence of paralogs. Conclusions The Indygene tool efficiently removes paralogy relationships from a given dataset and we found that such a reduction, performed prior to GSA, has the ability to generate significantly different results that often represent novel and plausible biological hypotheses. This was demonstrated for three different GSA approaches when applied to the reanalysis of previously published microarray datasets and suggests that the redundancy and non-independence of paralogs is an important consideration when dealing with GSA methodologies.

  3. Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula)

    Czech Academy of Sciences Publication Activity Database

    Symonová, Radka; Havelka, M.; Amemiya, C. T.; Howell, M. W.; Kořínková, Tereza; Flajšhans, M.; Gela, D.; Ráb, Petr

    2017-01-01

    Roč. 18, č. 1 (2017), č. článku 19. ISSN 1471-2156 R&D Projects: GA ČR GA14-02940S; GA MŠk EF15_003/0000460 Institutional support: RVO:67985904 Keywords : hoxA/D paralogs mapping * sturgeon whole genome duplication * ancient fish genome * rediploidization Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Genetics and heredity (medical genetics to be 3) Impact factor: 2.266, year: 2016

  4. Naturally-acquired cellular immune response against Plasmodium vivax merozoite surface protein-1 paralog antigen.

    Science.gov (United States)

    Changrob, Siriruk; Leepiyasakulchai, Chaniya; Tsuboi, Takafumi; Cheng, Yang; Lim, Chae Seung; Chootong, Patchanee; Han, Eun-Taek

    2015-04-15

    Plasmodium vivax merozoite surface protein-1 paralog (PvMSP1P) is a glycosylphosphatidylinositol-anchored protein expressed on the merozoite surface. This molecule is a target of natural immunity, as high anti-MSP1P-19 antibody levels were detected during P. vivax infection and the antibody inhibited PvMSP1P-erythrocyte binding. Recombinant PvMSP1P antigen results in production of a significant Th1 cytokine response in immunized mice. The present study was performed to characterize natural cellular immunity against PvMSP1P-19 and PvDBP region II in acute and recovery P. vivax infection. Peripheral blood mononuclear cells (PBMCs) from acute and recovery P. vivax infection were obtained for lymphocyte proliferation assay upon PvMSP1P-19 and PvDBP region II antigen stimulation. The culture supernatant was examined for the presence of the cytokines IL-2, TNF, IFN-γ and IL-10 by enzyme-linked immunosorbent assay (ELISA). To determine whether Th1 or Th2 have a memory response against PvMSP1P-19 and PvDBPII protein antigen, PBMCs from subjects who had recovered from P. vivax infection 8-10 weeks prior to the study were obtained for lymphocyte proliferation assay. Cytokine-producing cells were analysed by flow cytometry. IL-2 was detected at high levels in lymphocyte cultures from acutely infected P. vivax patients upon PvMSP1P-19 stimulation. Analysis of the Th1 or Th2 memory response in PBMC cultures from subjects who had recovered from P. vivax infection showed significantly elevated levels of PvMSP1P-19 and PvDBPII-specific IFN-γ-producing cells (P  response of IFN-γ-producing cells in PvMSP1P stimulation was fourfold greater in recovered subjects than that in acute-infection patients. CD4(+) T cells were the major cell phenotype involved in the response to PvMSP1P-19 and PvDBPII antigen. PvMSP1P-19 strongly induces a specific cellular immune response for protection against P. vivax compared with PvDBPII as the antigen induces activation of IFN

  5. Identifying pathogenicity of human variants via paralog-based yeast complementation.

    Directory of Open Access Journals (Sweden)

    Fan Yang

    2017-05-01

    Full Text Available To better understand the health implications of personal genomes, we now face a largely unmet challenge to identify functional variants within disease-associated genes. Functional variants can be identified by trans-species complementation, e.g., by failure to rescue a yeast strain bearing a mutation in an orthologous human gene. Although orthologous complementation assays are powerful predictors of pathogenic variation, they are available for only a few percent of human disease genes. Here we systematically examine the question of whether complementation assays based on paralogy relationships can expand the number of human disease genes with functional variant detection assays. We tested over 1,000 paralogous human-yeast gene pairs for complementation, yielding 34 complementation relationships, of which 33 (97% were novel. We found that paralog-based assays identified disease variants with success on par with that of orthology-based assays. Combining all homology-based assay results, we found that complementation can often identify pathogenic variants outside the homologous sequence region, presumably because of global effects on protein folding or stability. Within our search space, paralogy-based complementation more than doubled the number of human disease genes with a yeast-based complementation assay for disease variation.

  6. The Second Republic and the Civil War in the current political debate | La II República y la Guerra Civil en el debate político actual

    Directory of Open Access Journals (Sweden)

    Eduardo Sotillos Palet

    2007-12-01

    Full Text Available Seven decades on, the Second Republic and the civil war are still controversial topics that generate heated debate in numerous social groups, particularly among political parties and certain sectors of the media. Different individuals and groups express their sympathies towards either one of the two opposing factions. After the long years of silence imposed by Franco’s dictatorship, and once democracy had been firmly established in Spain, a powerful social movement emerged to vindicate the memory of those defeated in 1939, ignored and reviled by the Franco regime. | Después de setenta años, la II República y la Guerra Civil siguen siendo dos temas que generan un debate polémico en amplios sectores sociales, y en particular entre los partidos políticos y en determinados medios de comunicación. Unos y otros expresan sus simpatías hacia cada uno de los dos bandos en conflicto. Tras muchos años de silencio impuesto por la dictadura franquista y tras el proceso de transición a la democracia, y una vez que ésta está plena y sólidamente asentada, ha surgido un potente movimiento social que reivindica la memoria de los vencidos en 1939, ignorados y denostados por el franquismo.

  7. Regulation of expression of the paralogous Mlp family in Borrelia burgdorferi.

    Science.gov (United States)

    Yang, Xiaofeng F; Hübner, Anette; Popova, Taissia G; Hagman, Kayla E; Norgard, Michael V

    2003-09-01

    The Mlp (multicopy lipoproteins) family is one of many paralogous protein families in Borrelia burgdorferi. To examine the extent to which the 10 members of the Mlp family in B. burgdorferi strain 297 might be differentially regulated, antibodies specific for each of the Mlps were developed and used to analyze the protein expression profiles of individual Mlps when B. burgdorferi replicated under various cultivation conditions. All of the Mlps were upregulated coordinately when B. burgdorferi was cultivated at either elevated temperature, reduced culture pH, or increased spirochete cell density. Inasmuch as the expression of OspC is influenced by a novel RpoN-RpoS regulatory pathway, similar induction patterns for OspC and the Mlp paralogs prompted an assessment of whether the RpoN-RpoS pathway also was involved in Mlp expression. In contrast to wild-type B. burgdorferi, both RpoN- and RpoS-deficient mutants were unable to upregulate OspC or the Mlp paralogs when grown at lower pH (6.8), indicating that pH-mediated regulation of OspC and Mlp paralogs is dependent on the RpoN-RpoS pathway. However, when RpoN- or RpoS-deficient mutants were shifted from 23 degrees C to 37 degrees C or were cultivated to higher spirochete densities, some induction of the Mlps still occurred, whereas OspC expression was abolished. The combined findings suggest that the Mlp paralogs are coordinately regulated as a family and have an expression profile similar, but not identical, to that of OspC. Although Mlp expression as a family is influenced by the RpoN-RpoS regulatory pathway, there exists at least one additional layer of gene regulation, yet to be elucidated, contributing to Mlp expression in B. burgdorferi.

  8. Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.

    Directory of Open Access Journals (Sweden)

    Ho-Huu Joan

    2012-10-01

    Full Text Available Abstract Background Gene duplications are a molecular mechanism potentially mediating generation of functional novelty. However, the probabilities of maintenance and functional divergence of duplicated genes are shaped by selective pressures acting on gene copies immediately after the duplication event. The ratio of non-synonymous to synonymous substitution rates in protein-coding sequences provides a means to investigate selective pressures based on genic sequences. Three molecular signatures can reveal early stages of functional divergence between gene copies: change in the level of purifying selection between paralogous genes, occurrence of positive selection, and transient relaxed purifying selection following gene duplication. We studied three pairs of genes that are known to be involved in an interaction with symbiotic bacteria and were recently duplicated in the history of the Medicago genus (Fabaceae. We sequenced two pairs of polygalacturonase genes (Pg11-Pg3 and Pg11a-Pg11c and one pair of auxine transporter-like genes (Lax2-Lax4 in 17 species belonging to the Medicago genus, and sought for molecular signatures of differentiation between copies. Results Selective histories revealed by these three signatures of molecular differentiation were found to be markedly different between each pair of paralogs. We found sites under positive selection in the Pg11 paralogs while Pg3 has mainly evolved under purifying selection. The most recent paralogs examined Pg11a and Pg11c, are both undergoing positive selection and might be acquiring new functions. Lax2 and Lax4 paralogs are both under strong purifying selection, but still underwent a temporary relaxation of purifying selection immediately after duplication. Conclusions This study illustrates the variety of selective pressures undergone by duplicated genes and the effect of age of the duplication. We found that relaxation of selective constraints immediately after duplication might promote

  9. Morfologia do polén anemófilo e alergizante no Brasil: II. Polygonaceae, Amaranthaceae, Chenopodiaceae, Leguminosae, Euphorbiaceae e Myrtaceae

    Directory of Open Access Journals (Sweden)

    Ortrud Monika Barth

    1976-01-01

    Full Text Available Em continuação à primeira parte deste catálogo (Barth et al., 1975, é estudada a morfologia dos grãos de polén das espécies anemófilas pertencentes às famílias Polygonaceae, Amaranthaceae, Chenopodiaceae, Leguminosae, Euphorbiaceae e Myrta ceae, cujo conhecimento interessa a estudos relacionados à poluição atmosférica e a processos alérgicos, especialmente das vias respiratórias.In continuation to the first part of this catalogue (Barth et al., 1975, the morphology of the pollen grains of the anemophilous species of six additional families is studied, their correct identification being relevant to studies concerning air pollution and allergic processes, chiefly of the respiratory tract.

  10. La cultura política del ciudadano y la comunicación política en TV en la transición política del plebiscito chileno (octubre 1988. I. Metodología. II. Conclusiones

    Directory of Open Access Journals (Sweden)

    JOSÉ LUIS PIÑUEL RAIGADA

    1990-01-01

    Full Text Available Exposición de la acotación material y formal del objeto al que se destina la investigación realizada, y cuyo campo de observación es la situación histórica brindada con la campaña política del plebiscito chileno del 5 de octubre de 1988. La prefiguración teórica de este objeto es la responsable de la selección y consistencia de los datos que se han recolectado y procesado, y la que ha motivado a escoger como campo de observación la COMUNICACIÓN POLÍTICA televisiva y la CULTURA POLÍTICA del ciudadano en el Chile Plebiscitario. De la investigación se concluye que la Mediación comunicativa del Plebiscito ha implantado en la Transición chilena un proceso de resignificación cuyo sentido radica más en la "afirmación del cambio" que en la "afirmación de opciones contra", curiosamente ligadas estas últimas, por la vía de la comunicación, a la opción política cuya práctica no era de cambio, sino de continuidad.

  11. Interaction of fish aryl hydrocarbon receptor paralogs (AHR1 and AHR2) with the retinoblastoma protein

    Energy Technology Data Exchange (ETDEWEB)

    Merson, Rebeka R., E-mail: rmerson@ric.edu [Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543 (United States); Biology Department, Rhode Island College, 500 Mt. Pleasant Ave., Providence, RI 02908 (United States); Karchner, Sibel I.; Hahn, Mark E. [Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543 (United States)

    2009-08-13

    The aryl hydrocarbon receptor (AHR) mediates the toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and related compounds. In some mammalian cell lines, TCDD induces G1 cell cycle arrest, which depends on an interaction between the AHR and the retinoblastoma tumor suppressor (RB). Mammals possess one AHR, whereas fishes possess two or more AHR paralogs that differ in the domains important for AHR-RB interactions in mammals. To test the hypothesis that fish AHR paralogs differ in their ability to interact with RB, we cloned RB cDNA from Atlantic killifish, Fundulus heteroclitus, and studied the interactions of killifish RB protein with killifish AHR1 and AHR2. In coimmunoprecipitation experiments, in vitro-expressed killifish RB coprecipitated with both AHR1 and AHR2. Consistent with these results, both killifish AHR1 and AHR2 interacted with RB in mammalian two-hybrid assays. These results suggest that both fish AHR1 and AHR2 paralogs may have the potential to influence cell proliferation through interactions with RB.

  12. Expression of Hox paralog group 13 genes in adult and developing Megalobrama amblycephala.

    Science.gov (United States)

    Jakovlić, Ivan; Wang, Wei-Min

    2016-07-01

    Hox genes encode transcription factors that play a key role in specifying the body plan in most metazoans. HoxPG13 genes most probably played an important role in body length variation during the evolution of animals. This is the first report of the mRNA expression patterns of the entire Hox paralog group 13 (HoxA13a, HoxA13b, HoxB13a, HoxC13a, HoxC13b, HoxD13a) in fish. Expression was studied by qPCR in five tissues of adult Megalobrama amblycephala specimens (spleen, liver, kidney, intestine and gills) and during development (17 stages: fertilised egg to 90 days-old juveniles). Expression in tissues (for all six genes) was generally very low in gills (0.0006-0.05), spleen (0.006-0.09) and kidney (0.02-0.39); the highest in intestine (from 2.28 for HoxC13b to 244.29 for HoxC13a). During the development, a peak in expression around the hatching was observed for all six genes. Results suggest a high maternal expression of HoxA13a, and low for HoxA13ab. HoxD13a paralog exhibited the lowest expression: 0.0006-2.63 in tissues and 0.0005-1.7 during development, suggesting the possibility of a gradual loss of functionality. Expression of HoxC13 paralogs corroborates the findings in zebrafish: HoxC13b is maternally expressed and more important during the development. In adults, it was the opposite: expression was low for HoxC13b and very variable for HoxC13a (0.06-244.29). Differences in expression levels between both pairs of paralogs (Aa/Ab and Ca/Cb) indicate the possibility of the existence of some redundancy afforded by maintaining both paralogs. Copyright © 2016 Elsevier B.V. All rights reserved.

  13. Síntese, caracterização e estudo das propriedades magnéticas de um polímero de coordenação contendo cobalto(II e cobre(II

    Directory of Open Access Journals (Sweden)

    Tamyris T. da Cunha

    2012-01-01

    Full Text Available This work describes the synthesis and characterization of two new compounds with ligand opy (N-(2-pyridyloxamate: the copper(II precursor [Me4N]2[Cu(opy2].5H2O and CoII CuII coordination polymer {[CoCu(opy2]}n×4nH2O. This latter compound was obtained by reaction of [Me4N]2[Cu(opy2].5H2O and CoCl2.6H2O in water. The heterobimetallic CoII CuII chain was characterized by elemental analysis, IR spectroscopy, thermogravimetry and magnetic measurements. Magnetic characterization revealed typical behavior of one-dimensional (1D ferrimagnetic chain as shown in the curves of temperature (T dependence of magnetic susceptibility (χM, in the form of χMT versus T, and dependence of magnetization (M with applied field (H.

  14. Translesion DNA polymerases Pol ζ, Pol η, Pol ι, Pol κ and Rev1 are ...

    Indian Academy of Sciences (India)

    MADU

    Kozmin S G, Pavlov Y I, Kunkel T A and Sage E 2003 Roles of Saccharomyces cerevisiae DNA polymerases Pol η and. Pol ζ in response to simulated sunlight; Nucleic Acids Res. 31. 4541–4552. Lawrence C W 2002 Cellular roles of DNA polymerase ζ and Rev. 1 protein; DNA Repair 1 425–435. Lemontt J F 1971 Mutants ...

  15. In vitro transcription activities of Pol IV, Pol V and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing

    Energy Technology Data Exchange (ETDEWEB)

    Haag, Jeremy R.; Ream, Thomas S.; Marasco, Michelle; Nicora, Carrie D.; Norbeck, Angela D.; Pasa-Tolic, Ljiljana; Pikaard, Craig S.

    2012-12-14

    In Arabidopsis, RNA-dependent DNA methylation and transcriptional silencing involves three nuclear RNA polymerases that are biochemically undefined: the presumptive DNA-dependent RNA polymerases, Pol IV and Pol V and the putative RNA-dependent RNA polymerase, RDR2. Here, we demonstrate their RNA polymerase activities in vitro. Unlike Pol II, Pols IV and V require an RNA primer, are insensitive to alpha-amanitin and differ in their ability to displace non-template DNA during transcription. Biogenesis of 24 nt small interfering RNAs (siRNAs) requires both Pol IV and RDR2, which physically associate in vivo. Pol IV does not require RDR2 for activity, but RDR2 is nonfunctional in the absence of associated Pol IV, suggesting that their coupling explains the channeling of Pol IV transcripts into double-stranded RNAs that are then diced into 24 nt siRNAs.

  16. Los tres libros a Autólico de Teófilo de Antioquia y la Actitud Política de los cristianos en el siglo II

    Directory of Open Access Journals (Sweden)

    Daniel MORALES ESCOBAR

    2009-11-01

    Full Text Available El presente artículo tiene un objetivo muy concreto: llamar la atención sobre la importancia que Los tres libros a Autólico de Teófilo de Antioquia tienen como fuente histórica para d conocimiento de la actitud política de los cristianos en el último cuarto del siglo II, concretamente, en la época final del reinado de Marco Aurelio y de los primeros años del de Cómodo. Y ello porque hasta ahora nadie ha puesto de manifiesto esta importancia, cuando, por el contrario, se han dedicado muchas páginas al mismo tema en apologetas anteriores y posteriores a Teófilo, como son, entre los primeros, Justino, Melitón y Atenágoras, y entre los segundos, Apolonio y Tertuliano. Con ello no quiero decir que el nombre de Teófilo haya estado totalmente ausente de los trabajos publicados sobre las relaciones entre el cristianismo y el Imperio Romano, pero, desde luego, no ha sido objeto de la atención que en realidad merece.

  17. An enhanced method for sequence walking and paralog mining: TOPO® Vector-Ligation PCR

    Directory of Open Access Journals (Sweden)

    Davis Thomas M

    2010-03-01

    Full Text Available Abstract Background Although technological advances allow for the economical acquisition of whole genome sequences, many organisms' genomes remain unsequenced, and fully sequenced genomes may contain gaps. Researchers reliant upon partial genomic or heterologous sequence information require methods for obtaining unknown sequences from loci of interest. Various PCR based techniques are available for sequence walking - i.e., the acquisition of unknown DNA sequence adjacent to known sequence. Many such methods require rigid, elaborate protocols and/or impose narrowly confined options in the choice of restriction enzymes for necessary genomic digests. We describe a new method, TOPO® Vector-Ligation PCR (or TVL-PCR that innovatively integrates available tools and familiar concepts to offer advantages as a means of both targeted sequence walking and paralog mining. Findings TVL-PCR exploits the ligation efficiency of the pCR®4-TOPO® (Invitrogen, Carlsbad, California vector system to capture fragments of unknown sequence by creating chimeric molecules containing defined priming sites at both ends. Initially, restriction enzyme-digested genomic DNA is end-repaired to create 3' adenosine overhangs and is then ligated to pCR4-TOPO vectors. The ligation product pool is used directly as a template for nested PCR, using specific primers to target orthologous sequences, or degenerate primers to enable capture of paralogous gene family members. We demonstrated the efficacy of this method by capturing entire coding and partial promoter sequences of several strawberry Superman-like genes. Conclusions TVL-PCR is a convenient and efficient method for DNA sequence walking and paralog mining that is applicable to any organism for which relevant DNA sequence is available as a basis for primer design.

  18. Dilemas da cooperação: conflitos gerados pela política das "Listas Negras" no Brasil durante a Segunda Guerra Mundial Dilemmas of cooperation: the conflicts provoked by the policy of "Black Lists" in Brazil during World War II

    Directory of Open Access Journals (Sweden)

    Tania Quintaneiro

    2006-12-01

    Full Text Available No artigo são analisados os conflitos políticos gerados pela implementação das "Listas Negras" norte-americanas entre órgãos estatais e interesses privados no Brasil durante a Segunda Guerra Mundial.The article analyses the political conflicts caused by the implementation of American Black Lists between State agencies and private interests in Brazil during World War II.

  19. Nutrilyzer: A Tool for Deciphering Atomic Stoichiometry of Differentially Expressed Paralogous Proteins

    Directory of Open Access Journals (Sweden)

    Lotz Katrin

    2012-06-01

    Full Text Available Organisms try to maintain homeostasis by balanced uptake of nutrients from their environment. From an atomic perspective this means that, for example, carbon:nitrogen:sulfur ratios are kept within given limits. Upon limitation of, for example, sulfur, its acquisition is triggered. For yeast it was shown that transporters and enzymes involved in sulfur up- take are encoded as paralogous genes that express different isoforms. Sulfur deprivation leads to up-regulation of isoforms that are poor in sulfur-containing amino acids, that is, methinone and cysteine. Accordingly, sulfur-rich isoforms are down-regulated.

  20. Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.

    Science.gov (United States)

    Goodstadt, Leo; Ponting, Chris P

    2006-09-29

    Accurate predictions of orthology and paralogy relationships are necessary to infer human molecular function from experiments in model organisms. Previous genome-scale approaches to predicting these relationships have been limited by their use of protein similarity and their failure to take into account multiple splicing events and gene prediction errors. We have developed PhyOP, a new phylogenetic orthology prediction pipeline based on synonymous rate estimates, which accurately predicts orthology and paralogy relationships for transcripts, genes, exons, or genomic segments between closely related genomes. We were able to identify orthologue relationships to human genes for 93% of all dog genes from Ensembl. Among 1:1 orthologues, the alignments covered a median of 97.4% of protein sequences, and 92% of orthologues shared essentially identical gene structures. PhyOP accurately recapitulated genomic maps of conserved synteny. Benchmarking against predictions from Ensembl and Inparanoid showed that PhyOP is more accurate, especially in its predictions of paralogy. Nearly half (46%) of PhyOP paralogy predictions are unique. Using PhyOP to investigate orthologues and paralogues in the human and dog genomes, we found that the human assembly contains 3-fold more gene duplications than the dog. Species-specific duplicate genes, or "in-paralogues," are generally shorter and have fewer exons than 1:1 orthologues, which is consistent with selective constraints and mutation biases based on the sizes of duplicated genes. In-paralogues have experienced elevated amino acid and synonymous nucleotide substitution rates. Duplicates possess similar biological functions for either the dog or human lineages. Having accounted for 2,954 likely pseudogenes and gene fragments, and after separating 346 erroneously merged genes, we estimated that the human genome encodes a minimum of 19,700 protein-coding genes, similar to the gene count of nematode worms. PhyOP is a fast and robust

  1. Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.

    Directory of Open Access Journals (Sweden)

    Leo Goodstadt

    2006-09-01

    Full Text Available Accurate predictions of orthology and paralogy relationships are necessary to infer human molecular function from experiments in model organisms. Previous genome-scale approaches to predicting these relationships have been limited by their use of protein similarity and their failure to take into account multiple splicing events and gene prediction errors. We have developed PhyOP, a new phylogenetic orthology prediction pipeline based on synonymous rate estimates, which accurately predicts orthology and paralogy relationships for transcripts, genes, exons, or genomic segments between closely related genomes. We were able to identify orthologue relationships to human genes for 93% of all dog genes from Ensembl. Among 1:1 orthologues, the alignments covered a median of 97.4% of protein sequences, and 92% of orthologues shared essentially identical gene structures. PhyOP accurately recapitulated genomic maps of conserved synteny. Benchmarking against predictions from Ensembl and Inparanoid showed that PhyOP is more accurate, especially in its predictions of paralogy. Nearly half (46% of PhyOP paralogy predictions are unique. Using PhyOP to investigate orthologues and paralogues in the human and dog genomes, we found that the human assembly contains 3-fold more gene duplications than the dog. Species-specific duplicate genes, or "in-paralogues," are generally shorter and have fewer exons than 1:1 orthologues, which is consistent with selective constraints and mutation biases based on the sizes of duplicated genes. In-paralogues have experienced elevated amino acid and synonymous nucleotide substitution rates. Duplicates possess similar biological functions for either the dog or human lineages. Having accounted for 2,954 likely pseudogenes and gene fragments, and after separating 346 erroneously merged genes, we estimated that the human genome encodes a minimum of 19,700 protein-coding genes, similar to the gene count of nematode worms. PhyOP is a

  2. An H3K9/S10 methyl-phospho switch modulates Polycomb and Pol II binding at repressed genes during differentiation.

    Science.gov (United States)

    Sabbattini, Pierangela; Sjoberg, Marcela; Nikic, Svetlana; Frangini, Alberto; Holmqvist, Per-Henrik; Kunowska, Natalia; Carroll, Tom; Brookes, Emily; Arthur, Simon J; Pombo, Ana; Dillon, Niall

    2014-03-01

    Methylated histones H3K9 and H3K27 are canonical epigenetic silencing modifications in metazoan organisms, but the relationship between the two modifications has not been well characterized. H3K9me3 coexists with H3K27me3 in pluripotent and differentiated cells. However, we find that the functioning of H3K9me3 is altered by H3S10 phosphorylation in differentiated postmitotic osteoblasts and cycling B cells. Deposition of H3K9me3/S10ph at silent genes is partially mediated by the mitogen- and stress-activated kinases (MSK1/2) and the Aurora B kinase. Acquisition of H3K9me3/S10ph during differentiation correlates with loss of paused S5 phosphorylated RNA polymerase II, which is present on Polycomb-regulated genes in embryonic stem cells. Reduction of the levels of H3K9me3/S10ph by kinase inhibition results in increased binding of RNAPIIS5ph and the H3K27 methyltransferase Ezh1 at silent promoters. Our results provide evidence of a novel developmentally regulated methyl-phospho switch that modulates Polycomb regulation in differentiated cells and stabilizes repressed states.

  3. Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog

    Energy Technology Data Exchange (ETDEWEB)

    Volkov, Oleg A.; Kinch, Lisa; Ariagno, Carson; Deng, Xiaoyi; Zhong, Shihua; Grishin, Nick; Tomchick, Diana R.; Chen, Zhe; Phillips, Margaret A.

    2016-12-15

    Catalytically inactive enzyme paralogs occur in many genomes. Some regulate their active counterparts but the structural principles of this regulation remain largely unknown. We report X-ray structures ofTrypanosoma brucei S-adenosylmethionine decarboxylase alone and in functional complex with its catalytically dead paralogous partner, prozyme. We show monomericTbAdoMetDC is inactive because of autoinhibition by its N-terminal sequence. Heterodimerization with prozyme displaces this sequence from the active site through a complex mechanism involving acis-to-transproline isomerization, reorganization of a β-sheet, and insertion of the N-terminal α-helix into the heterodimer interface, leading to enzyme activation. We propose that the evolution of this intricate regulatory mechanism was facilitated by the acquisition of the dimerization domain, a single step that can in principle account for the divergence of regulatory schemes in the AdoMetDC enzyme family. These studies elucidate an allosteric mechanism in an enzyme and a plausible scheme by which such complex cooperativity evolved.

  4. IDN2 and its paralogs form a complex required for RNA-directed DNA methylation.

    Directory of Open Access Journals (Sweden)

    Cui-Jun Zhang

    Full Text Available IDN2/RDM12 has been previously identified as a component of the RNA-directed DNA methylation (RdDM machinery in Arabidopsis thaliana, but how it functions in RdDM remains unknown. By affinity purification of IDN2, we co-purified two IDN2 paralogs IDP1 and IDP2 (IDN2 PARALOG 1 and 2. The coiled-coil domain between the XS and XH domains of IDN2 is essential for IDN2 homodimerization, whereas the IDN2 C-terminal XH domain but not the coiled-coil domain is required for IDN2 interaction with IDP1 and IDP2. By introducing the wild-type IDN2 sequence and its mutated derivatives into the idn2 mutant for complementation testing, we demonstrated that the previously uncharacterized IDN2 XH domain is required for the IDN2-IDP1/IDP2 complex formation as well as for IDN2 function. IDP1 is required for de novo DNA methylation, siRNA accumulation, and transcriptional gene silencing, whereas IDP2 has partially overlapping roles with IDP1. Unlike IDN2, IDP1 and IDP2 are incapable of binding double-stranded RNA, suggesting that the roles of IDP1 and IDP2 are different from those of IDN2 in the IDN2-IDP1/IDP2 complex and that IDP1 and IDP2 are essential for the functioning of the complex in RdDM.

  5. Differential expression and novel permeability properties of three aquaporin 8 paralogs from seawater-challenged Atlantic salmon smolts

    DEFF Research Database (Denmark)

    Engelund, Morten Buch; Chauvigné, François; Christensen, Birgitte M

    2013-01-01

    paralog. Immunofluorescence microscopy localized Aqp8aa(1+2) to intracellular compartments of the liver and intestine, and Aqp8ab and Aqp8b to apical plasma membrane domains of the intestinal epithelium, with Aqp8b also in goblet cells. In a control experiment with rainbow trout, immunoelectron microscopy...... confirmed abundant labeling of Aqp8ab and -8b at apical plasma membranes of enterocytes in the middle intestine and also in subapical vesicular structures. During SW-challenge, Aqp8ab showed significantly increased levels of protein expression in plasma membrane enriched fractions of the intestine...... of SW challenged smolts. All three Aqp8 paralogs were permeable to water and urea, whereas Aqp8ab and -8b were, surprisingly, also permeable to glycerol. The mRNA tissue distribution of each paralog was distinct although some tissues, such as the intestine showed redundant expression of more than one...

  6. Propuesta de Modelo Teórico que señala las variables de la Mercadotecnia política que influyen en el comportamiento electoral. Caso: Delegación D-II-IPN-7 del SNTE

    OpenAIRE

    Parra Ortega, Viridiana

    2013-01-01

    En Mexico cada vez mas se manejan estrategias de mercadotecnia política para lograr incentivar la desicion del voto, diversas variables que afectan el comportamiento electoral se encuentran inmersas dentro de la aplicación y estudio de la mercadotecnia política, pero no se han determinado las variables de mercadotecnia política que influyen en el comportamiento electoral.A partir de lo anterior el objetivo de esta investigación es: proponer un modelo teórico que señale las variables de mercad...

  7. Computational Identification of the Paralogs and Orthologs of Human Cytochrome P450 Superfamily and the Implication in Drug Discovery

    Directory of Open Access Journals (Sweden)

    Shu-Ting Pan

    2016-06-01

    Full Text Available The human cytochrome P450 (CYP superfamily consisting of 57 functional genes is the most important group of Phase I drug metabolizing enzymes that oxidize a large number of xenobiotics and endogenous compounds, including therapeutic drugs and environmental toxicants. The CYP superfamily has been shown to expand itself through gene duplication, and some of them become pseudogenes due to gene mutations. Orthologs and paralogs are homologous genes resulting from speciation or duplication, respectively. To explore the evolutionary and functional relationships of human CYPs, we conducted this bioinformatic study to identify their corresponding paralogs, homologs, and orthologs. The functional implications and implications in drug discovery and evolutionary biology were then discussed. GeneCards and Ensembl were used to identify the paralogs of human CYPs. We have used a panel of online databases to identify the orthologs of human CYP genes: NCBI, Ensembl Compara, GeneCards, OMA (“Orthologous MAtrix” Browser, PATHER, TreeFam, EggNOG, and Roundup. The results show that each human CYP has various numbers of paralogs and orthologs using GeneCards and Ensembl. For example, the paralogs of CYP2A6 include CYP2A7, 2A13, 2B6, 2C8, 2C9, 2C18, 2C19, 2D6, 2E1, 2F1, 2J2, 2R1, 2S1, 2U1, and 2W1; CYP11A1 has 6 paralogs including CYP11B1, 11B2, 24A1, 27A1, 27B1, and 27C1; CYP51A1 has only three paralogs: CYP26A1, 26B1, and 26C1; while CYP20A1 has no paralog. The majority of human CYPs are well conserved from plants, amphibians, fishes, or mammals to humans due to their important functions in physiology and xenobiotic disposition. The data from different approaches are also cross-validated and validated when experimental data are available. These findings facilitate our understanding of the evolutionary relationships and functional implications of the human CYP superfamily in drug discovery.

  8. Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming.

    Science.gov (United States)

    Lyubetsky, Vassily; Gershgorin, Roman; Gorbunov, Konstantin

    2017-12-06

    Chromosome structure is a very limited model of the genome including the information about its chromosomes such as their linear or circular organization, the order of genes on them, and the DNA strand encoding a gene. Gene lengths, nucleotide composition, and intergenic regions are ignored. Although highly incomplete, such structure can be used in many cases, e.g., to reconstruct phylogeny and evolutionary events, to identify gene synteny, regulatory elements and promoters (considering highly conserved elements), etc. Three problems are considered; all assume unequal gene content and the presence of gene paralogs. The distance problem is to determine the minimum number of operations required to transform one chromosome structure into another and the corresponding transformation itself including the identification of paralogs in two structures. We use the DCJ model which is one of the most studied combinatorial rearrangement models. Double-, sesqui-, and single-operations as well as deletion and insertion of a chromosome region are considered in the model; the single ones comprise cut and join. In the reconstruction problem, a phylogenetic tree with chromosome structures in the leaves is given. It is necessary to assign the structures to inner nodes of the tree to minimize the sum of distances between terminal structures of each edge and to identify the mutual paralogs in a fairly large set of structures. A linear algorithm is known for the distance problem without paralogs, while the presence of paralogs makes it NP-hard. If paralogs are allowed but the insertion and deletion operations are missing (and special constraints are imposed), the reduction of the distance problem to integer linear programming is known. Apparently, the reconstruction problem is NP-hard even in the absence of paralogs. The problem of contigs is to find the optimal arrangements for each given set of contigs, which also includes the mutual identification of paralogs. We proved that these

  9. Legalidad islámica y legitimidad política en el Califato de Córdoba: la proclamación de Hišām II

    Directory of Open Access Journals (Sweden)

    García Sanjuán, Alejandro

    2008-06-01

    Full Text Available This article deals with the process of proclamation as Caliph of Cordoba of Hišām, son and next-in-line to al-Ḥakam II, when he was scarcely eleven years old. Two problems are analyzed in relation to this aspect. On the one hand, from a legal point of view, it is brought into question the lawfulness of the government of an under age in the classical Islamic societies. On the other hand, the political crisis produced by the proclamation of Hišām as a consequence of the opposition to his proclamation in certain juridical and palatine circles. In this context, Ibn Abī ‘Āmir, the future Almanzor, managed to usurp the political authority, pushing aside the caliph and making in that way the caliphal institution fall into disrepute. As a result, the proclamation of Hišām constitutes the first stage of the crisis of the Cordoban caliphate, which finally led to its collapse.

    Este artículo aborda el proceso de proclamación como califa de Córdoba de Hišām, hijo y sucesor de al-Ḥakam II, cuando era todavía un niño de apenas once años. En relación con este aspecto, se analizan dos problemas. Desde el punto de vista jurídico, la cuestión de la legalidad del gobierno de un menor de edad en las sociedades islámicas clásicas. Por otro lado, la crisis política que la proclamación de Hišām desencadenó, debido a las resistencias que generaba en ciertos medios palatinos y jurídicos su minoría. En este contexto, Ibn Abī ‘Āmir, futuro Almanzor, logró usurpar el ejercicio del poder, marginando por completo al califa y provocando con ello el descrédito de la institución califal. Por todo ello, la proclamación de Hišām constituye la primera fase en la crisis del califato de Córdoba, que acabó desembocando en su abolición.

  10. Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana

    Science.gov (United States)

    Richardson, Dale N.; Wiehe, Thomas

    Whole genome duplication (WGD) has catalyzed the formation of new species, genes with novel functions, altered expression patterns, complexified signaling pathways and has provided organisms a level of genetic robustness. We studied the long-term evolution and interrelationships of 5’ upstream regulatory sequences (URSs), protein coding sequences (CDSs) and expression correlations (EC) of duplicated gene pairs in Arabidopsis. Three distinct methods revealed significant evolutionary conservation between paralogous URSs and were highly correlated with microarray-based expression correlation of the respective gene pairs. Positional information on exact matches between sequences unveiled the contribution of micro-chromosomal rearrangements on expression divergence. A three-way rank analysis of URS similarity, CDS divergence and EC uncovered specific gene functional biases. Transcription factor activity was associated with gene pairs exhibiting conserved URSs and divergent CDSs, whereas a broad array of metabolic enzymes was found to be associated with gene pairs showing diverged URSs but conserved CDSs.

  11. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.

    Science.gov (United States)

    Pryszcz, Leszek P; Huerta-Cepas, Jaime; Gabaldón, Toni

    2011-03-01

    Reliable prediction of orthology is central to comparative genomics. Approaches based on phylogenetic analyses closely resemble the original definition of orthology and paralogy and are known to be highly accurate. However, the large computational cost associated to these analyses is a limiting factor that often prevents its use at genomic scales. Recently, several projects have addressed the reconstruction of large collections of high-quality phylogenetic trees from which orthology and paralogy relationships can be inferred. This provides us with the opportunity to infer the evolutionary relationships of genes from multiple, independent, phylogenetic trees. Using such strategy, we combine phylogenetic information derived from different databases, to predict orthology and paralogy relationships for 4.1 million proteins in 829 fully sequenced genomes. We show that the number of independent sources from which a prediction is made, as well as the level of consistency across predictions, can be used as reliable confidence scores. A webserver has been developed to easily access these data (http://orthology.phylomedb.org), which provides users with a global repository of phylogeny-based orthology and paralogy predictions.

  12. Signal transducer and activator of transcription 5 (STAT5) paralog dose governs T cell effector and regulatory functions

    Science.gov (United States)

    Villarino, Alejandro; Laurence, Arian; Robinson, Gertraud W; Bonelli, Michael; Dema, Barbara; Afzali, Behdad; Shih, Han-Yu; Sun, Hong-Wei; Brooks, Stephen R; Hennighausen, Lothar; Kanno, Yuka; O'Shea, John J

    2016-01-01

    The transcription factor STAT5 is fundamental to the mammalian immune system. However, the relationship between its two paralogs, STAT5A and STAT5B, and the extent to which they are functionally distinct, remain uncertain. Using mouse models of paralog deficiency, we demonstrate that they are not equivalent for CD4+ 'helper' T cells, the principal orchestrators of adaptive immunity. Instead, we find that STAT5B is dominant for both effector and regulatory (Treg) responses and, therefore, uniquely necessary for immunological tolerance. Comparative analysis of genomic distribution and transcriptomic output confirm that STAT5B has fargreater impact but, surprisingly, the data point towards asymmetric expression (i.e. paralog dose), rather than distinct functional properties, as the key distinguishing feature. Thus, we propose a quantitative model of STAT5 paralog activity whereby relative abundance imposes functional specificity (or dominance) in the face of widespread structural homology. DOI: http://dx.doi.org/10.7554/eLife.08384.001 PMID:26999798

  13. Highly divergent 18S rRNA gene paralogs in a Cryptosporidium genotype from eastern chipmunks (Tamias striatus)

    Czech Academy of Sciences Publication Activity Database

    Stenger, B.L.S.; Clark, M.E.; Kváč, Martin; Khan, E.; Giddings, C.W.; Dyer, N.W.; Schultz, J.L.; McEvoy, J.M.

    2015-01-01

    Roč. 32, JUN 2015 (2015), s. 113-123 ISSN 1567-1348 R&D Projects: GA MŠk(CZ) LH11061 Institutional support: RVO:60077344 Keywords : Cryptosporidium * Paralogy * 18S rRNA * 18S rDNA Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 2.591, year: 2015

  14. Effects of MreB paralogs on poly-γ-glutamic acid synthesis and cell morphology in Bacillus amyloliquefaciens.

    Science.gov (United States)

    Gao, Weixia; Zhang, Zhongxiong; Feng, Jun; Dang, Yulei; Quan, Yufen; Gu, Yanyan; Wang, Shufang; Song, Cunjiang

    2016-09-01

    Actin-like MreB paralogs play important roles in cell shape maintenance, cell wall synthesis and the regulation of the D,L-endopeptidases, CwlO and LytE. The gram-positive bacteria, Bacillus amyloliquefaciens LL3, is a poly-γ-glutamic acid (γ-PGA) producing strain that contains three MreB paralogs: MreB, Mbl and MreBH. In B. amyloliquefaciens, CwlO and LytE can degrade γ-PGA. In this study, we aimed to test the hypothesis that modulating transcript levels of MreB paralogs would alter the synthesis and degradation of γ-PGA. The results showed that overexpression or inhibition of MreB, Mbl or MreBH had distinct effects on cell morphology and the molecular weight of the γ-PGA products. In fermentation medium, cells of mreB inhibition mutant were 50.2% longer than LL3, and the γ-PGA titer increased by 55.7%. However, changing the expression level of mbl showed only slight effects on the morphology, γ-PGA molecular weight and titer. In the mreBH inhibition mutant, γ-PGA production and its molecular weight increased by 56.7% and 19.4%, respectively. These results confirmed our hypothesis that suppressing the expression of MreB paralogs might reduce γ-PGA degradation, and that improving the cell size could strengthen γ-PGA synthesis. This is the first report of enhanced γ-PGA production via suppression of actin-like MreB paralogs. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Editing out five Serpina1 paralogs to create a mouse model of genetic emphysema

    Science.gov (United States)

    Sun, Huaming; Zieger, Marina; Cox, Andrew; Cardozo, Brynn; Li, Weiying; Oliveira, Gabriella; Davis, Airiel; Gruntman, Alisha; Flotte, Terence R.; Brodsky, Michael H.; Hoffman, Andrew M.; Elmallah, Mai K.; Mueller, Christian

    2018-01-01

    Chronic obstructive pulmonary disease affects 10% of the worldwide population, and the leading genetic cause is α-1 antitrypsin (AAT) deficiency. Due to the complexity of the murine locus, which includes up to six Serpina1 paralogs, no genetic animal model of the disease has been successfully generated until now. Here we create a quintuple Serpina1a–e knockout using CRISPR/Cas9-mediated genome editing. The phenotype recapitulates the human disease phenotype, i.e., absence of hepatic and circulating AAT translates functionally to a reduced capacity to inhibit neutrophil elastase. With age, Serpina1 null mice develop emphysema spontaneously, which can be induced in younger mice by a lipopolysaccharide challenge. This mouse models not only AAT deficiency but also emphysema and is a relevant genetic model and not one based on developmental impairment of alveolarization or elastase administration. We anticipate that this unique model will be highly relevant not only to the preclinical development of therapeutics for AAT deficiency, but also to emphysema and smoking research. PMID:29453277

  16. Two highly thermostable paralogous single-stranded DNA-binding proteins from Thermoanaerobacter tengcongensis.

    Science.gov (United States)

    Olszewski, Marcin; Mickiewicz, Małgorzata; Kur, Józef

    2008-07-01

    The thermophilic bacterium Thermoanaerobacter tengcongensis has two single-stranded DNA-binding (SSB) proteins, designated TteSSB2 and TteSSB3. In a SSB complementation assay in Escherichia coli, only TteSSB3 took over the in vivo function of EcoSSB. We have cloned the ssb genes obtained by PCR and have developed E. coli overexpression systems. The TteSSB2 and TteSSB3 consist of 153 and 150 amino acids with a calculated molecular mass of 17.29 and 16.96 kDa, respectively. They are the smallest known bacterial SSB proteins. The homology between amino acid sequences of these proteins is 40% identity and 53% similarity. They are functional as homotetramers, with each monomer encoding one single-stranded DNA binding domain (OB-fold). In fluorescence titrations with poly(dT), both proteins bind single-stranded DNA with a binding site size of about 40 nt per homotetramer. Thermostability with half-life of about 30 s at 95 degrees C makes TteSSB3 similar to the known SSB of Thermus aquaticus (TaqSSB). The TteSSB2 was fully active even after 6 h incubation at 100 degrees C. Here, we show for the first time paralogous thermostable homotetrameric SSBs, which could be an attractive alternative for known homodimeric thermostable SSB proteins in their applications for molecular biology methods and analytical purposes.

  17. Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs

    Directory of Open Access Journals (Sweden)

    Mironov Andrey A

    2009-06-01

    Full Text Available Abstract Background Alternative splicing is an important mechanism for generating functional and evolutionary diversity of proteins in eukaryotes. Here, we studied the frequency and functionality of recently gained, rodent-specific alternative exons. Results We projected the data about alternative splicing of mouse genes to the rat, human, and dog genomes, and identified exons conserved in the rat genome, but missing in more distant genomes. We estimated the frequency of rodent-specific exons while controlling for possible residual conservation of spurious exons. The frequency of rodent-specific exons is higher among predominantly skipped exons and exons disrupting the reading frame. Separation of all genes by the rate of sequence evolution and by gene families has demonstrated that rodent-specific cassette exons are more frequent in rapidly evolving genes and in rodent-specific paralogs. Conclusion Thus we demonstrated that recently gained exons tend to occur in fast-evolving genes, and their inclusion rate tends to be lower than that of older exons. This agrees with the theory that gain of alternative exons is one of the major mechanisms of gene evolution.

  18. Synthetic lethal interaction between the tumour suppressor STAG2 and its paralog STAG1.

    Science.gov (United States)

    Benedetti, Lorena; Cereda, Matteo; Monteverde, LeeAnn; Desai, Nikita; Ciccarelli, Francesca D

    2017-06-06

    Cohesin is a multi-protein complex that tethers sister chromatids during mitosis and mediates DNA repair, genome compartmentalisation and regulation of gene expression. Cohesin subunits frequently acquire cancer loss-of-function alterations and act as tumour suppressors in several tumour types. This has led to increased interest in cohesin as potential target in anti-cancer therapy. Here we show that the loss-of-function of STAG2, a core component of cohesin and an emerging tumour suppressor, leads to synthetic dependency of mutated cancer cells on its paralog STAG1. STAG1 and STAG2 share high sequence identity, encode mutually exclusive cohesin subunits and retain partially overlapping functions. We inhibited STAG1 and STAG2 in several cancer cell lines where the two genes have variable mutation and copy number status. In all cases, we observed that the simultaneous blocking of STAG1 and STAG2 significantly reduces cell proliferation. We further confirmed the synthetic lethal interaction developing a vector-free CRISPR system to induce STAG1/STAG2 double gene knockout. We provide strong evidence that STAG1 is a promising therapeutic target in cancers with inactivating alterations of STAG2.

  19. Functional Divergence of Poplar Histidine-Aspartate Kinase HK1 Paralogs in Response to Osmotic Stress

    Directory of Open Access Journals (Sweden)

    François Héricourt

    2016-12-01

    Full Text Available Previous works have shown the existence of protein partnerships belonging to a MultiStep Phosphorelay (MSP in Populus putatively involved in osmosensing. This study is focused on the identification of a histidine-aspartate kinase, HK1b, paralog of HK1a. The characterization of HK1b showed its ability to homo- and hetero-dimerize and to interact with a few Histidine-containing Phosphotransfer (HPt proteins, suggesting a preferential partnership in poplar MSP linked to drought perception. Furthermore, determinants for interaction specificity between HK1a/1b and HPts were studied by mutagenesis analysis, identifying amino acids involved in this specificity. The HK1b expression analysis in different poplar organs revealed its co-expression with three HPts, reinforcing the hypothesis of partnership participation in the MSP in planta. Moreover, HK1b was shown to act as an osmosensor with kinase activity in a functional complementation assay of an osmosensor deficient yeast strain. These results revealed that HK1b showed a different behaviour for canonical phosphorylation of histidine and aspartate residues. These phosphorylation modularities of canonical amino acids could explain the improved osmosensor performances observed in yeast. As conserved duplicates reflect the selective pressures imposed by the environmental requirements on the species, our results emphasize the importance of HK1 gene duplication in poplar adaptation to drought stress.

  20. Specific Roles of XRCC4 Paralogs PAXX and XLF during V(DJ Recombination

    Directory of Open Access Journals (Sweden)

    Chloé Lescale

    2016-09-01

    Full Text Available Paralog of XRCC4 and XLF (PAXX is a member of the XRCC4 superfamily and plays a role in nonhomologous end-joining (NHEJ, a DNA repair pathway critical for lymphocyte antigen receptor gene assembly. Here, we find that the functions of PAXX and XLF in V(DJ recombination are masked by redundant joining activities. Thus, combined PAXX and XLF deficiency leads to an inability to join RAG-cleaved DNA ends. Additionally, we demonstrate that PAXX function in V(DJ recombination depends on its interaction with Ku. Importantly, we show that, unlike XLF, the role of PAXX during the repair of DNA breaks does not overlap with ATM and the RAG complex. Our findings illuminate the role of PAXX in V(DJ recombination and support a model in which PAXX and XLF function during NHEJ repair of DNA breaks, whereas XLF, the RAG complex, and the ATM-dependent DNA damage response promote end joining by stabilizing DNA ends.

  1. No Distinction of Orthology/Paralogy between Human and Chimpanzee Rh Blood Group Genes.

    Science.gov (United States)

    Kitano, Takashi; Kim, Choong-Gon; Blancher, Antoine; Saitou, Naruya

    2016-02-12

    On human (Homo sapiens) chromosome 1, there is a tandem duplication encompassing Rh blood group genes (Hosa_RHD and Hosa_RHCE). This duplication occurred in the common ancestor of humans, chimpanzees (Pan troglodytes), and gorillas, after splitting from their common ancestor with orangutans. Although several studies have been conducted on ape Rh blood group genes, the clear genome structures of the gene clusters remain unknown. Here, we determined the genome structure of the gene cluster of chimpanzee Rh genes by sequencing five BAC (Bacterial Artificial Chromosome) clones derived from chimpanzees. We characterized three complete loci (Patr_RHα, Patr_RHβ, and Patr_RHγ). In the Patr_RHβ locus, a short version of the gene, which lacked the middle part containing exons 4-8, was observed. The Patr_RHα and Patr_RHβ genes were located on the locations corresponding to Hosa_RHD and Hosa_RHCE, respectively, and Patr_RHγ was in the immediate vicinity of Patr_RHβ. Sequence comparisons revealed high sequence similarity between Patr_RHβ and Hosa_RHCE, while the chimpanzee Rh gene closest to Hosa_RHD was not Patr_RHα but rather Patr_RHγ. The results suggest that rearrangements and gene conversions frequently occurred between these genes and that the classic orthology/paralogy dichotomy no longer holds between human and chimpanzee Rh blood group genes. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  2. Selenium controls transcription of paralogous formate dehydrogenase genes in the termite gut acetogen, Treponema primitia.

    Science.gov (United States)

    Matson, Eric G; Zhang, Xinning; Leadbetter, Jared R

    2010-08-01

    The termite gut spirochete, Treponema primitia, is a CO(2)-reductive acetogen that is phylogenetically distinct from other distantly related and more extensively studied acetogens such as Moorella thermoacetica. Research on T. primitia has revealed details about the role of spirochetes in CO(2)-reductive acetogenesis, a process important to the mutualism occurring between termites and their gut microbial communities. Here, a locus of the T. primitia genome containing Wood-Ljungdahl pathway genes for CO(2)-reductive acetogenesis was sequenced. This locus contained methyl-branch genes of the pathway (i.e. for the reduction of CO(2) to the level of methyl-tetrahydrofolate) including paralogous genes for cysteine and selenocysteine (Sec) variants of formate dehydrogenase (FDH) and genes for Sec incorporation. The FDH variants affiliated phylogenetically with hydrogenase-linked FDH enzymes, suggesting that T. primitia FDH enzymes utilize electrons derived directly from molecular H(2). Sub-nanomolar concentrations of selenium decreased transcript levels of the cysteine variant FDH gene. Selenium concentration did not markedly influence the level of mRNA upstream of the Sec-codon in the Sec variant FDH; however, the level of transcript extending downstream of the Sec-codon increased incrementally with increasing selenium concentrations. The features and regulation of these FDH genes are an indication that T. primitia may experience dynamic selenium availability in its H(2)-rich gut environment. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

  3. A paralogous decoy protects Phytophthora sojae apoplastic effector PsXEG1 from a host inhibitor.

    Science.gov (United States)

    Ma, Zhenchuan; Zhu, Lin; Song, Tianqiao; Wang, Yang; Zhang, Qi; Xia, Yeqiang; Qiu, Min; Lin, Yachun; Li, Haiyang; Kong, Liang; Fang, Yufeng; Ye, Wenwu; Wang, Yan; Dong, Suomeng; Zheng, Xiaobo; Tyler, Brett M; Wang, Yuanchao

    2017-02-17

    The extracellular space (apoplast) of plant tissue represents a critical battleground between plants and attacking microbes. Here we show that a pathogen-secreted apoplastic xyloglucan-specific endoglucanase, PsXEG1, is a focus of this struggle in the Phytophthora sojae -soybean interaction. We show that soybean produces an apoplastic glucanase inhibitor protein, GmGIP1, that binds to PsXEG1 to block its contribution to virulence. P. sojae , however, secretes a paralogous PsXEG1-like protein, PsXLP1, that has lost enzyme activity but binds to GmGIP1 more tightly than does PsXEG1, thus freeing PsXEG1 to support P. sojae infection. The gene pair encoding PsXEG1 and PsXLP1 is conserved in many Phytophthora species, and the P. parasitica orthologs PpXEG1 and PpXLP1 have similar functions. Thus, this apoplastic decoy strategy may be widely used in Phytophthora pathosystems. Copyright © 2017, American Association for the Advancement of Science.

  4. Nuclear ribosomal ITS functional paralogs resolve the phylogenetic relationships of a late-Miocene radiation cycad Cycas (Cycadaceae.

    Directory of Open Access Journals (Sweden)

    Long-Qian Xiao

    Full Text Available Cycas is the most widespread and diverse genus among the ancient cycads, but the extant species could be the product of late Miocene rapid radiations. Taxonomic treatments to date for this genus are quite controversial, which makes it difficult to elucidate its evolutionary history. We cloned 161 genomic ITS sequences from 31 species representing all sections of Cycas. The divergent ITS paralogs were examined within each species and identified as putative pseudogenes, recombinants and functional paralogs. Functional paralogs were used to reconstruct phylogenetic relationships with pseudogene sequences as molecular outgroups, since an unambiguous ITS sequence alignment with their closest relatives, the Zamiaceae, is unachievable. A fully resolved and highly supported tree topology was obtained at the section level, with two major clades including six minor clades. The results fully supported the classification scheme proposed by Hill (2004 at the section level, with the minor clades representing his six sections. The two major clades could be recognised as two subgenera. The obtained pattern of phylogenetic relationships, combined with the different seed dispersal capabilities and paleogeography, allowed us to propose a late Miocene rapid radiation of Cycas that might have been promoted by vicariant events associated with the complex topography and orogeny of South China and adjacent regions. In contrast, transoceanic dispersals might have played an important role in the rapid diversification of sect. Cycas, whose members have evolved a spongy layer in their seeds aiding water dispersals.

  5. Nuclear Ribosomal ITS Functional Paralogs Resolve the Phylogenetic Relationships of a Late-Miocene Radiation Cycad Cycas (Cycadaceae)

    Science.gov (United States)

    Xiao, Long-Qian; Möller, Michael

    2015-01-01

    Cycas is the most widespread and diverse genus among the ancient cycads, but the extant species could be the product of late Miocene rapid radiations. Taxonomic treatments to date for this genus are quite controversial, which makes it difficult to elucidate its evolutionary history. We cloned 161 genomic ITS sequences from 31 species representing all sections of Cycas. The divergent ITS paralogs were examined within each species and identified as putative pseudogenes, recombinants and functional paralogs. Functional paralogs were used to reconstruct phylogenetic relationships with pseudogene sequences as molecular outgroups, since an unambiguous ITS sequence alignment with their closest relatives, the Zamiaceae, is unachievable. A fully resolved and highly supported tree topology was obtained at the section level, with two major clades including six minor clades. The results fully supported the classification scheme proposed by Hill (2004) at the section level, with the minor clades representing his six sections. The two major clades could be recognised as two subgenera. The obtained pattern of phylogenetic relationships, combined with the different seed dispersal capabilities and paleogeography, allowed us to propose a late Miocene rapid radiation of Cycas that might have been promoted by vicariant events associated with the complex topography and orogeny of South China and adjacent regions. In contrast, transoceanic dispersals might have played an important role in the rapid diversification of sect. Cycas, whose members have evolved a spongy layer in their seeds aiding water dispersals. PMID:25635842

  6. Functional Divergence among Silkworm Antimicrobial Peptide Paralogs by the Activities of Recombinant Proteins and the Induced Expression Profiles

    Science.gov (United States)

    Ye, Mingqiang; Deng, Xiaojuan; Yi, Huiyu; Huang, Yadong; Tan, Xiang; Han, Dong; Wang, Bo; Xiang, Zhonghuai; Cao, Yang; Xia, Qingyou

    2011-01-01

    Antimicrobial peptides are small-molecule proteins that are usually encoded by multiple-gene families. They play crucial roles in the innate immune response, but reports on the functional divergence of antimicrobial peptide gene families are rare. In this study, 14 paralogs of antimicrobial peptides belonging to cecropin, moricin and gloverin families were recombinantly expressed in pET expression systems. By antimicrobial activity tests, peptides representing paralogs in the same family of cecropin and moricin families, displayed remarkable differences against 10 tested bacteria. The evolutionary rates were relatively fast in the two families, which presented obvious functional divergence among paralogs of each family. Four peptides of gloverin family had similar antimicrobial spectrum and activity against tested bacteria. The gloverin family showed similar antimicrobial function and slow evolutionary rates. By induced transcriptional activity, genes encoding active antimicrobial peptides were upregulated at obviously different levels when silkworm pupae were infected by three types of microbes. Association analysis of antimicrobial activities and induced transcriptional activities indicated that the antimicrobial activities might be positively correlated with induced transcriptional activities in the cecropin and moricin families. These results suggest that representative BmcecB6, BmcecD and Bmmor as the major effector genes have broad antimicrobial spectrum, strong antimicrobial activity and high microbe-induced expression among each family and maybe play crucial roles in eliminating microbial infection. PMID:21479226

  7. Relationships of RNA polymerase II genetic interactors to transcription start site usage defects and growth in Saccharomyces cerevisiae.

    Science.gov (United States)

    Jin, Huiyan; Kaplan, Craig D

    2014-11-06

    Transcription initiation by RNA Polymerase II (Pol II) is an essential step in gene expression and regulation in all organisms. Initiation requires a great number of factors, and defects in this process can be apparent in the form of altered transcription start site (TSS) selection in Saccharomyces cerevisiae (Baker's yeast). It has been shown previously that TSS selection in S. cerevisiae is altered in Pol II catalytic mutants defective in a conserved active site feature known as the trigger loop. Pol II trigger loop mutants show growth phenotypes in vivo that correlate with biochemical defects in vitro and exhibit wide-ranging genetic interactions. We assessed how Pol II mutant growth phenotypes and TSS selection in vivo are modified by Pol II genetic interactors to estimate the relationship between altered TSS selection in vivo and organismal fitness of Pol II mutants. We examined whether the magnitude of TSS selection defects could be correlated with Pol II mutant-transcription factor double mutant phenotypes. We observed broad genetic interactions among Pol II trigger loop mutants and General Transcription Factor (GTF) alleles, with reduced-activity Pol II mutants especially sensitive to defects in TFIIB. However, Pol II mutant growth defects could be uncoupled from TSS selection defects in some Pol II allele-GTF allele double mutants, whereas a number of other Pol II genetic interactors did not influence ADH1 start site selection alone or in combination with Pol II mutants. Initiation defects are likely only partially responsible for Pol II allele growth phenotypes, with some Pol II genetic interactors able to exacerbate Pol II mutant growth defects while leaving initiation at a model TSS selection promoter unaffected. Copyright © 2015 Jin and Kaplan.

  8. Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases.

    Science.gov (United States)

    Matsumoto, Shunsuke; Shimada, Atsushi; Kohda, Daisuke

    2013-07-01

    Protein N-glycosylation occurs in the three domains of life. Oligosaccharyltransferase (OST) transfers an oligosaccharide chain to the asparagine residue in the N-glycosylation sequons. The catalytic subunits of the OST enzyme are STT3 in eukaryotes, AglB in archaea and PglB in eubacteria. The genome of a hyperthermophilic archaeon, Archaeoglobus fulgidus, encodes three paralogous AglB proteins. We previously solved the crystal structures of the C-terminal globular domains of two paralogs, AglB-Short 1 and AglB-Short 2. We determined the crystal structure of the C-terminal globular domain of the third AglB paralog, AglB-Long, at 1.9 Å resolutions. The crystallization of the fusion protein with maltose binding protein (MBP) afforded high quality protein crystals. Two MBP-AglB-L molecules formed a swapped dimer in the crystal. Since the fusion protein behaved as a monomer upon gel filtration, we reconstituted the monomer structure from the swapped dimer by exchanging the swapped segments. The C-terminal domain of A. fulgidus AglB-L includes a structural unit common to AglB-S1 and AglB-S2. This structural unit contains the evolutionally conserved WWDYG and DK motifs. The present structure revealed that A. fulgidus AglB-L contained a variant type of the DK motif with a short insertion, and confirmed that the second signature residue, Lys, of the DK motif participates in the formation of a pocket that binds to the serine and threonine residues at the +2 position of the N-glycosylation sequon. The structure of A. fulgidus AglB-L, together with the two previously solved structures of AglB-S1 and AglB-S2, provides a complete overview of the three AglB paralogs encoded in the A. fulgidus genome. All three AglBs contain a variant type of the DK motif. This finding supports a previously proposed rule: The STT3/AglB/PglB paralogs in one organism always contain the same type of Ser/Thr-binding pocket. The present structure will be useful as a search model for molecular

  9. As políticas activas e passivas do mercado de trabalho

    OpenAIRE

    Novo, Álvaro; Centeno, Mário

    2008-01-01

    A generalidade dos países utiliza políticas destinadas a minorar os custos sociais e individuais do desemprego. Os economistas classificam estas políticas do mercado de trabalho em dois grupos: (i) políticas activas e (ii) políticas passivas. As primeiras têm como objectivo dotar os desempregados com as qualificações necessárias para minimizar a duração do desemprego, enquanto as segundas visam garantir uma fonte de rendimento durante o período de desemprego, sendo particularmente úteis para ...

  10. OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies

    Directory of Open Access Journals (Sweden)

    Young Nevin D

    2003-09-01

    Full Text Available Abstract Background In eukaryotic genomes, most genes are members of gene families. When comparing genes from two species, therefore, most genes in one species will be homologous to multiple genes in the second. This often makes it difficult to distinguish orthologs (separated through speciation from paralogs (separated by other types of gene duplication. Combining phylogenetic relationships and genomic position in both genomes helps to distinguish between these scenarios. This kind of comparison can also help to describe how gene families have evolved within a single genome that has undergone polyploidy or other large-scale duplications, as in the case of Arabidopsis thaliana – and probably most plant genomes. Results We describe a suite of programs called OrthoParaMap (OPM that makes genomic comparisons, identifies syntenic regions, determines whether sets of genes in a gene family are related through speciation or internal chromosomal duplications, maps this information onto phylogenetic trees, and infers internal nodes within the phylogenetic tree that may represent local – as opposed to speciation or segmental – duplication. We describe the application of the software using three examples: the melanoma-associated antigen (MAGE gene family on the X chromosomes of mouse and human; the 20S proteasome subunit gene family in Arabidopsis, and the major latex protein gene family in Arabidopsis. Conclusion OPM combines comparative genomic positional information and phylogenetic reconstructions to identify which gene duplications are likely to have arisen through internal genomic duplications (such as polyploidy, through speciation, or through local duplications (such as unequal crossing-over. The software is freely available at http://www.tc.umn.edu/~cann0010/.

  11. Regulation of gill claudin paralogs by salinity, cortisol and prolactin in Mozambique tilapia (Oreochromis mossambicus).

    Science.gov (United States)

    Tipsmark, Christian K; Breves, Jason P; Rabeneck, D Brett; Trubitt, Rebecca T; Lerner, Darren T; Grau, E Gordon

    2016-09-01

    In euryhaline teleosts, reorganization of gill tight junctions during salinity acclimation involves dynamic expression of specific claudin (Cldn) paralogs. We identified four transcripts encoding Cldn tight junction proteins in the tilapia gill transcriptome: cldn10c, cldn10e, cldn28a and cldn30. A tissue distribution experiment found cldn10c and cldn10e expression levels in the gill to be 100-fold higher than any other tissues examined. cldn28a and cldn30 levels in the gill were 10-fold greater than levels in other tissues. Expression of these genes in Mozambique tilapia was examined during acclimation to fresh water (FW), seawater (SW), and in response to hormone treatments. Transfer of tilapia from FW to SW elevated cldn10c and cldn10e, while cldn28a and cldn30 were stimulated following transfer from SW to FW. In hypophysectomized tilapia transferred to FW, pituitary extirpation induced reduced expression of cldn10c, cldn10e and cldn28a; these effects were mitigated equally by either prolactin or cortisol replacement. In vitro experiments with gill filaments showed that cortisol stimulated expression of all four cldns examined, suggesting a direct action of cortisol in situ. Our data indicate that elevated cldn10c and cldn10e expression is important during acclimation of tilapia to SW possibly by conferring ion specific paracellular permeability. On the other hand, expression of cldn28a and cldn30 appears to contribute to reorganization of branchial epithelium during FW acclimation. Hormone treatment experiments showed that particular FW- and SW-induced cldns are controlled by cortisol and prolactin. Copyright © 2016 Elsevier Inc. All rights reserved.

  12. Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs.

    Directory of Open Access Journals (Sweden)

    Feng-Xia Tian

    Full Text Available Aldehyde dehydrogenases (ALDHs constitute a superfamily of NAD(P+-dependent enzymes that catalyze the irreversible oxidation of a wide range of reactive aldehydes to their corresponding nontoxic carboxylic acids. ALDHs have been studied in many organisms from bacteria to mammals; however, no systematic analyses incorporating genome organization, gene structure, expression profiles, and cis-acting elements have been conducted in the model tree species Populus trichocarpa thus far. In this study, a comprehensive analysis of the Populus ALDH gene superfamily was performed. A total of 26 Populus ALDH genes were found to be distributed across 12 chromosomes. Genomic organization analysis indicated that purifying selection may have played a pivotal role in the retention and maintenance of PtALDH gene families. The exon-intron organizations of PtALDHs were highly conserved within the same family, suggesting that the members of the same family also may have conserved functionalities. Microarray data and qRT-PCR analysis indicated that most PtALDHs had distinct tissue-specific expression patterns. The specificity of cis-acting elements in the promoter regions of the PtALDHs and the divergence of expression patterns between nine paralogous PtALDH gene pairs suggested that gene duplications may have freed the duplicate genes from the functional constraints. The expression levels of some ALDHs were up- or down-regulated by various abiotic stresses, implying that the products of these genes may be involved in the adaptation of Populus to abiotic stresses. Overall, the data obtained from our investigation contribute to a better understanding of the complexity of the Populus ALDH gene superfamily and provide insights into the function and evolution of ALDH gene families in vascular plants.

  13. Independent regulation of vertebral number and vertebral identity by microRNA-196 paralogs.

    Science.gov (United States)

    Wong, Siew Fen Lisa; Agarwal, Vikram; Mansfield, Jennifer H; Denans, Nicolas; Schwartz, Matthew G; Prosser, Haydn M; Pourquié, Olivier; Bartel, David P; Tabin, Clifford J; McGlinn, Edwina

    2015-09-01

    The Hox genes play a central role in patterning the embryonic anterior-to-posterior axis. An important function of Hox activity in vertebrates is the specification of different vertebral morphologies, with an additional role in axis elongation emerging. The miR-196 family of microRNAs (miRNAs) are predicted to extensively target Hox 3' UTRs, although the full extent to which miR-196 regulates Hox expression dynamics and influences mammalian development remains to be elucidated. Here we used an extensive allelic series of mouse knockouts to show that the miR-196 family of miRNAs is essential both for properly patterning vertebral identity at different axial levels and for modulating the total number of vertebrae. All three miR-196 paralogs, 196a1, 196a2, and 196b, act redundantly to pattern the midthoracic region, whereas 196a2 and 196b have an additive role in controlling the number of rib-bearing vertebra and positioning of the sacrum. Independent of this, 196a1, 196a2, and 196b act redundantly to constrain total vertebral number. Loss of miR-196 leads to a collective up-regulation of numerous trunk Hox target genes with a concomitant delay in activation of caudal Hox genes, which are proposed to signal the end of axis extension. Additionally, we identified altered molecular signatures associated with the Wnt, Fgf, and Notch/segmentation pathways and demonstrate that miR-196 has the potential to regulate Wnt activity by multiple mechanisms. By feeding into, and thereby integrating, multiple genetic networks controlling vertebral number and identity, miR-196 is a critical player defining axial formulae.

  14. Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins

    Directory of Open Access Journals (Sweden)

    Yan Koon-Kiu

    2007-11-01

    Full Text Available Abstract Background The evolution of the full repertoire of proteins encoded in a given genome is mostly driven by gene duplications, deletions, and sequence modifications of existing proteins. Indirect information about relative rates and other intrinsic parameters of these three basic processes is contained in the proteome-wide distribution of sequence identities of pairs of paralogous proteins. Results We introduce a simple mathematical framework based on a stochastic birth-and-death model that allows one to extract some of this information and apply it to the set of all pairs of paralogous proteins in H. pylori, E. coli, S. cerevisiae, C. elegans, D. melanogaster, and H. sapiens. It was found that the histogram of sequence identities p generated by an all-to-all alignment of all protein sequences encoded in a genome is well fitted with a power-law form ~ p-γ with the value of the exponent γ around 4 for the majority of organisms used in this study. This implies that the intra-protein variability of substitution rates is best described by the Gamma-distribution with the exponent α ≈ 0.33. Different features of the shape of such histograms allow us to quantify the ratio between the genome-wide average deletion/duplication rates and the amino-acid substitution rate. Conclusion We separately measure the short-term ("raw" duplication and deletion rates rdup∗ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaemOCai3aa0baaSqaaiabbsgaKjabbwha1jabbchaWbqaaiabgEHiQaaaaaa@3283@, rdel∗ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaemOCai3aa0baaSqaaiabbsga

  15. Política y Administración Provincial. La Diputación de Sevilla durante la Dictadura de Primo de Rivera y la II República (1923-1936).

    OpenAIRE

    Ponce Alberca, Julio

    2016-01-01

    Desde la perspectiva de fines del siglo XX, los regímenes políticos de la España de los años veinte y treinta aparecen como una secuencia de ensayos en respuesta a la profunda crisis sufrida por el sistema de la Restauración (1876-1923). Bajo ese enfoque, la Segunda República (1931-1936) se nos muestra inscrita en el esfuerzo por encontrar una nueva alternativa tras el fracaso de la Dictadura primorriverista (1923-1930) y las dictablandas del genera...

  16. Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana

    Directory of Open Access Journals (Sweden)

    Mara Sangiovanni

    2013-12-01

    Full Text Available Arabidopsis thaliana became the model organism for plant studies because of its small diploid genome, rapid lifecycle and short adult size. Its genome was the first among plants to be sequenced, becoming the reference in plant genomics. However, the Arabidopsis genome is characterized by an inherently complex organization, since it has undergone ancient whole genome duplications, followed by gene reduction, diploidization events and extended rearrangements, which relocated and split up the retained portions. These events, together with probable chromosome reductions, dramatically increased the genome complexity, limiting its role as a reference. The identification of paralogs and single copy genes within a highly duplicated genome is a prerequisite to understand its organization and evolution and to improve its exploitation in comparative genomics. This is still controversial, even in the widely studied Arabidopsis genome. This is also due to the lack of a reference bioinformatics pipeline that could exhaustively identify paralogs and singleton genes. We describe here a complete computational strategy to detect both duplicated and single copy genes in a genome, discussing all the methodological issues that may strongly affect the results, their quality and their reliability. This approach was used to analyze the organization of Arabidopsis nuclear protein coding genes, and besides classifying computationally defined paralogs into networks and single copy genes into different classes, it unraveled further intriguing aspects concerning the genome annotation and the gene relationships in this reference plant species. Since our results may be useful for comparative genomics and genome functional analyses, we organized a dedicated web interface to make them accessible to the scientific community.

  17. Bases teórico-políticas del bloque ibérico : la relación peninsular en la fase de inflexión de la II Guerra Mundial, 1942-1945

    Directory of Open Access Journals (Sweden)

    Juan Carlos Jiménez Redondo

    1994-01-01

    Full Text Available Al abordar las relaciones entre España y Portugal cualquiera que sea el momento histórico escogido, resulta siempre sorprendente comprobar cómo una frontera política, ausente de impedimentos naturales, ha podido levantar un muro difícilmente franqueable entre ambas comunidades. De hecho, la noción de vecindad tiene en el caso hispano-portugués una dimensión estática, basada en el hecho de una contigüedad geográfica, que contrasta con la dimensión dinámica propia de una relación de vecindad, donde los actores no sólo están unidos geográficamente sino que se da una comunicación y relación efectiva entre ellos.

  18. The ribosomal protein Rpl22 controls ribosome composition by directly repressing expression of its own paralog, Rpl22l1.

    Directory of Open Access Journals (Sweden)

    Monique N O'Leary

    Full Text Available Most yeast ribosomal protein genes are duplicated and their characterization has led to hypotheses regarding the existence of specialized ribosomes with different subunit composition or specifically-tailored functions. In yeast, ribosomal protein genes are generally duplicated and evidence has emerged that paralogs might have specific roles. Unlike yeast, most mammalian ribosomal proteins are thought to be encoded by a single gene copy, raising the possibility that heterogenous populations of ribosomes are unique to yeast. Here, we examine the roles of the mammalian Rpl22, finding that Rpl22(-/- mice have only subtle phenotypes with no significant translation defects. We find that in the Rpl22(-/- mouse there is a compensatory increase in Rpl22-like1 (Rpl22l1 expression and incorporation into ribosomes. Consistent with the hypothesis that either ribosomal protein can support translation, knockdown of Rpl22l1 impairs growth of cells lacking Rpl22. Mechanistically, Rpl22 regulates Rpl22l1 directly by binding to an internal hairpin structure and repressing its expression. We propose that ribosome specificity may exist in mammals, providing evidence that one ribosomal protein can influence composition of the ribosome by regulating its own paralog.

  19. The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-ß-lysine

    DEFF Research Database (Denmark)

    Roy, Hervé; Zou, S Betty; Bullwinkle, Tammy J

    2011-01-01

    The lysyl-tRNA synthetase paralog PoxA modifies elongation factor P (EF-P) with a-lysine at low efficiency. Cell-free extracts containing non-a-lysine substrates of PoxA modified EF-P with a change in mass consistent with addition of ß-lysine, a substrate also predicted by genomic analyses. EF-P ......-P was efficiently functionally modified with (R)-ß-lysine but not (S)-ß-lysine or genetically encoded a-amino acids, indicating that PoxA has evolved an activity orthogonal to that of the canonical aminoacyl-tRNA synthetases.......The lysyl-tRNA synthetase paralog PoxA modifies elongation factor P (EF-P) with a-lysine at low efficiency. Cell-free extracts containing non-a-lysine substrates of PoxA modified EF-P with a change in mass consistent with addition of ß-lysine, a substrate also predicted by genomic analyses. EF...

  20. The MMT-POL Instrument Control System

    Science.gov (United States)

    Warner, C.; Packham, C.; Jones, T. J.; Varosi, F.; Eikenberry, S. S.; Dewahl, K.; Krejny, M.

    2011-07-01

    Instrument control system (ICS) suites are a continually evolving class of software packages that are highly dependent upon the design choices and application programming interfaces (APIs) of the observatory control system (OCS), as well as the hardware choices for motors and electronics. We present the ICS for MMT-POL, a 1-5 μm polarimeter for the MMT telescope, in the context of being a transitional step between the software packages developed for facility class instruments at the University of Florida (UF), such as Flamingos-II and CanariCam, and in preparation for 30 m-class instruments. Our goals for improving ICS suites are to make them (a) portable (compile once, run anywhere), (b) highly modular and extensible (through the re-use of common libraries), (c) multi-threaded (to allow multiple tasks to be performed in parallel), (d) smart, and (e) easy to use and maintain. An ICS should also be well-defined and use mature languages (we choose Java and Python) and common standards (such as XML and the FITS file format). We also note that as hardware moves away from serial communications to ethernet, the use of TCP sockets makes communication faster and easier. Below, we present our design choices for the MMT-POL ICS and discuss our reasons for these choices and potential issues that must be addressed for future ICS suites ready for thirty meter class instruments.

  1. Characterisation of a novel paralog of scavenger receptor class B member I (SCARB1 in Atlantic salmon (Salmo salar

    Directory of Open Access Journals (Sweden)

    Omholt Stig W

    2011-05-01

    Full Text Available Abstract Background Red flesh colour is a unique trait found in some salmonid genera. Carotenoid pigments are not synthesized de novo in the fish, but are provided by dietary uptake. A better understanding of the molecular mechanisms underlying the cellular uptake and deposition of carotenoids could potentially be used to improve the low muscle deposition rate that is typically found in farmed Atlantic salmon. In addition, from an evolutionary point of view, the establishment and maintenance of this trait is still poorly understood. It has been demonstrated in several species that scavenger receptor class B, member 1 (SCARB1 is involved in intestinal absorption of carotenoids, which makes this gene a possible source of genetic variation in salmonid flesh pigmentation. Results In this study, a novel paralog of SCARB1 (SCARB1-2 was detected through screening for genetic variation in Atlantic salmon SCARB1. Full length SCARB1-2 encodes a protein with 89% identity to Atlantic salmon SCARB1, except for the C-terminal cytoplasmic tail that shows only 12% identity. The most prominent site of SCARB1 mRNA expression was in the mid gut, while a five-fold lower level was detected in Atlantic salmon skeletal muscle and liver. The SCARB1-2 mRNA was equally expressed in liver, muscle and mid gut, and at a lower level than SCARB1 mRNA. A total of seven different SCARB1-2 alleles comprising repetitive enhancer of zeste motifs (EZH2 were identified in the founding parents of a resource Atlantic salmon population. We mapped the SCARB1-2 paralog to a region on Atlantic salmon chromosome 1, containing a putative QTL for flesh colour. Addition of the SCARB1-2 marker increased the significance of this QTL, however the large confidence interval surrounding the QTL precludes confirmation of SCARB1-2 as a causative gene underlying variation in this trait. Conclusion We have characterised a novel paralog of SCARB1 (SCARB1-2, have mapped it to Atlantic salmon chromosome 1

  2. Characterisation of a novel paralog of scavenger receptor class B member I (SCARB1) in Atlantic salmon (Salmo salar).

    Science.gov (United States)

    Sundvold, Hilde; Helgeland, Hanna; Baranski, Matthew; Omholt, Stig W; Våge, Dag Inge

    2011-05-30

    Red flesh colour is a unique trait found in some salmonid genera. Carotenoid pigments are not synthesized de novo in the fish, but are provided by dietary uptake. A better understanding of the molecular mechanisms underlying the cellular uptake and deposition of carotenoids could potentially be used to improve the low muscle deposition rate that is typically found in farmed Atlantic salmon. In addition, from an evolutionary point of view, the establishment and maintenance of this trait is still poorly understood. It has been demonstrated in several species that scavenger receptor class B, member 1 (SCARB1) is involved in intestinal absorption of carotenoids, which makes this gene a possible source of genetic variation in salmonid flesh pigmentation. In this study, a novel paralog of SCARB1 (SCARB1-2) was detected through screening for genetic variation in Atlantic salmon SCARB1. Full length SCARB1-2 encodes a protein with 89% identity to Atlantic salmon SCARB1, except for the C-terminal cytoplasmic tail that shows only 12% identity. The most prominent site of SCARB1 mRNA expression was in the mid gut, while a five-fold lower level was detected in Atlantic salmon skeletal muscle and liver. The SCARB1-2 mRNA was equally expressed in liver, muscle and mid gut, and at a lower level than SCARB1 mRNA. A total of seven different SCARB1-2 alleles comprising repetitive enhancer of zeste motifs (EZH2) were identified in the founding parents of a resource Atlantic salmon population. We mapped the SCARB1-2 paralog to a region on Atlantic salmon chromosome 1, containing a putative QTL for flesh colour. Addition of the SCARB1-2 marker increased the significance of this QTL, however the large confidence interval surrounding the QTL precludes confirmation of SCARB1-2 as a causative gene underlying variation in this trait. We have characterised a novel paralog of SCARB1 (SCARB1-2), have mapped it to Atlantic salmon chromosome 1 and have described its expression in various tissues

  3. The zebrafish genome encodes the largest vertebrate repertoire of functional aquaporins with dual paralogy and substrate specificities similar to mammals

    Directory of Open Access Journals (Sweden)

    Chauvigné François

    2010-02-01

    Full Text Available Abstract Background Aquaporins are integral membrane proteins that facilitate the transport of water and small solutes across cell membranes. These proteins are vital for maintaining water homeostasis in living organisms. In mammals, thirteen aquaporins (AQP0-12 have been characterized, but in lower vertebrates, such as fish, the diversity, structure and substrate specificity of these membrane channel proteins are largely unknown. Results The screening and isolation of transcripts from the zebrafish (Danio rerio genome revealed eighteen sequences structurally related to the four subfamilies of tetrapod aquaporins, i.e., aquaporins (AQP0, -1 and -4, water and glycerol transporters or aquaglyceroporins (Glps; AQP3 and AQP7-10, a water and urea transporter (AQP8, and two unorthodox aquaporins (AQP11 and -12. Phylogenetic analyses of nucleotide and deduced amino acid sequences demonstrated dual paralogy between teleost and human aquaporins. Three of the duplicated zebrafish isoforms have unlinked loci, two have linked loci, while DrAqp8 was found in triplicate across two chromosomes. Genomic sequencing, structural analysis, and maximum likelihood reconstruction, further revealed the presence of a putative pseudogene that displays hybrid exons similar to tetrapod AQP5 and -1. Ectopic expression of the cloned transcripts in Xenopus laevis oocytes demonstrated that zebrafish aquaporins and Glps transport water or water, glycerol and urea, respectively, whereas DrAqp11b and -12 were not functional in oocytes. Contrary to humans and some rodents, intrachromosomal duplicates of zebrafish AQP8 were water and urea permeable, while the genomic duplicate only transported water. All aquaporin transcripts were expressed in adult tissues and found to have divergent expression patterns. In some tissues, however, redundant expression of transcripts encoding two duplicated paralogs seems to occur. Conclusion The zebrafish genome encodes the largest repertoire of

  4. Molecular and functional characterization of seven Na+/K+-ATPase β subunit paralogs in Senegalese sole (Solea senegalensis Kaup, 1858).

    Science.gov (United States)

    Armesto, Paula; Infante, Carlos; Cousin, Xavier; Ponce, Marian; Manchado, Manuel

    2015-04-01

    In the present work, seven genes encoding Na(+),K(+)-ATPase (NKA) β-subunits in the teleost Solea senegalensis are described for the first time. Sequence analysis of the predicted polypeptides revealed a high degree of conservation with those of other vertebrate species and maintenance of important motifs involved in structure and function. Phylogenetic analysis clustered the seven genes into four main clades: β1 (atp1b1a and atp1b1b), β2 (atp1b2a and atp1b2b), β3 (atp1b3a and atp1b3b) and β4 (atp1b4). In juveniles, all paralogous transcripts were detected in the nine tissues examined albeit with different expression patterns. The most ubiquitous expressed gene was atp1b1a whereas atp1b1b was mainly detected in osmoregulatory organs (gill, kidney and intestine), and atp1b2a, atp1b2b, atp1b3a, atp1b3b and atp1b4 in brain. An expression analysis in three brain regions and pituitary revealed that β1-type transcripts were more abundant in pituitary than the other β paralogs with slight differences between brain regions. Quantification of mRNA abundance in gills after a salinity challenge showed an activation of atp1b1a and atp1b1b at high salinity water (60 ppt) and atp1b3a and atp1b3b in response to low salinity (5 ppt). Transcriptional analysis during larval development showed specific expression patterns for each paralog. Moreover, no differences in the expression profiles between larvae cultivated at 10 and 35 ppt were observed except for atp1b4 with higher mRNA levels at 10 than 35 ppt at 18 days post hatch. Whole-mount in situ hybridization analysis revealed that atp1b1b was mainly localized in gut, pronephric tubule, gill, otic vesicle, and chordacentrum of newly hatched larvae. All these data suggest distinct roles of NKA β subunits in tissues, during development and osmoregulation with β1 subunits involved in the adaptation to hyperosmotic conditions and β3 subunits to hypoosmotic environments. Copyright © 2014 Elsevier Inc. All rights reserved.

  5. Major histocompatibility (MH) class II ß gene polymorphism influences disease resistance of common carp (Cyprinus carpio L.)

    NARCIS (Netherlands)

    Rakus, K.L.; Wiegertjes, G.F.; Jurecka, P.M.; Walker, P.D.; Pilarczyk, A.; Irnazarow, I.

    2009-01-01

    Genes of the major histocompatibility complex (MHC) are crucial elements of adaptive immunity. High polymorphism renders the MHC genes highly suitable for studies on association with disease resistance. In common carp (Cyprinus carpio L.), there are two paralogous groups of MH class II B genes,

  6. Nonredundant and locus-specific gene repression functions of PRC1 paralog family members in human hematopoietic stem/progenitor cells

    NARCIS (Netherlands)

    van den Boom, Vincent; Rozenveld-Geugien, Marjan; Bonardi, Francesco; Malanga, Donatella; van Gosliga, Djoke; Heyink, Anne Margriet; Viglietto, Giuseppe; Morrone, Giovanni; Fusetti, Fabrizia; Vellenga, Edo; Schuringa, Jan Jacob

    2013-01-01

    The Polycomb group (PcG) protein BMI1 is a key factor in regulating hematopoietic stem cell (HSC) and leukemic stem cell self-renewal and functions in the context of the Polycomb repressive complex 1 (PRC1). In humans, each of the 5 subunits of PRC1 has paralog family members of which many reside in

  7. Structure–Activity Relationship in a Purine-Scaffold Compound Series with Selectivity for the Endoplasmic Reticulum Hsp90 Paralog Grp94

    Science.gov (United States)

    Patel, Hardik J.; Patel, Pallav D.; Ochiana, Stefan O.; Yan, Pengrong; Sun, Weilin; Patel, Maulik R.; Shah, Smit K.; Tramentozzi, Elisa; Brooks, James; Bolaender, Alexander; Shrestha, Liza; Stephani, Ralph; Finotti, Paola; Leifer, Cynthia; Li, Zihai; Gewirth, Daniel T.; Taldone, Tony; Chiosis, Gabriela

    2015-01-01

    Grp94 is involved in the regulation of a restricted number of proteins and represents a potential target in a host of diseases, including cancer, septic shock, autoimmune diseases, chronic inflammatory conditions, diabetes, coronary thrombosis, and stroke. We have recently identified a novel allosteric pocket located in the Grp94 N-terminal binding site that can be used to design ligands with a 2-log selectivity over the other Hsp90 paralogs. Here we perform extensive SAR investigations in this ligand series and rationalize the affinity and paralog selectivity of choice derivatives by molecular modeling. We then use this to design 18c, a derivative with good potency for Grp94 (IC50 = 0.22 μM) and selectivity over other paralogs (>100- and 33-fold for Hsp90α/β and Trap-1, respectively). The paralog selectivity and target-mediated activity of 18c was confirmed in cells through several functional readouts. Compound 18c was also inert when tested against a large panel of kinases. We show that 18c has biological activity in several cellular models of inflammation and cancer and also present here for the first time the in vivo profile of a Grp94 inhibitor. PMID:25901531

  8. Recrutamento político

    OpenAIRE

    Norris, Pippa

    2013-01-01

    O objetivo principal deste artigo é apresentar uma breve revisão da literatura sobre recrutamento político e oferecer alguns critérios empíricos para análise. A partir de uma perspectiva integrada, nos estabelecemos um modelo de análise que trabalha com a estrutural social e as instituições políticas. O modelo de oferta e demanda foi mobilizado para relacionar os inputs do background social e as possíveis consequências nas instituições. Os dados apresentados provém de uma diversidade de fonte...

  9. A crucial role of paralogous β-defensin genes in the Chinese alligator innate immune system revealed by the first determination of a Crocodilia defensin cluster.

    Science.gov (United States)

    Tang, Ke-Yi; Wang, Xin; Wan, Qiu-Hong; Fang, Sheng-Guo

    2018-04-01

    The β-defensin, one of the antimicrobial peptides (AMPs), is a significant component of the innate immune with a broad range of antimicrobial activities. Differing from the widely-studied mammals and birds, limited information about β-defensins has been reported in reptiles, especially in crocodilians. As a same ancient species as dinosaurs and the most endangered species of 23 crocodilians, the survival of Chinese alligator (Alligator sinensis) means a powerful immune system and possible involvement of AMPs in its immune resistance. In this study, we identified 20 novel Alligator sinensisβ-defensin genes (AsBDs) from a 390 kb region using bioinformatic and experimental approaches, and successfully distinguished six orthologous AsBDs to birds and nine paralogous AsBDs undergoing gene duplication events. The amino acid alignment shows that the AsBD paralogs, like α-defensins, encode a significantly longer pro-piece comparing with the orthologs. The calculation of non-synonymous (d N ) and synonymous (d S ) substitutions in the mature peptide reveals that the AsBD paralogs experience a significantly higher selective pressure (d N /d S ) than the orthologs, but a similar evolutionary force to α-defensins. The gene expression result indicates that the AsBD paralogs have a significantly higher expression level than the orthologos in gastrointestinal tract where the host is vulnerable to enteric pathogenic bacteria, as observed in α-defensins. These three pieces of evidence demonstrate that the AsBD paralogs do play an important role in maintaining long-term survival of this endangered reptile. Thus, this survey of AsBDs on the genomic structure, evolutionary characteristics, and expression pattern provides a genetic and immunological foundation for further investigating their antimicrobial function and alternative antibiotics potentiality. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

  10. Desde la proclamación de la República al 18 de julio de 1936 : el cambio de rumbo político en la II División Orgánica

    OpenAIRE

    Gil Honduvilla, Joaquín

    2009-01-01

    Análisis del proceso de cambio de mentalidad de los militares en el período 1931-1936 y de las circunstancias que determinaron que unos oficiales que en 1931 aceptaron sin resistencia el nuevo régimen, cinco años después procedieran a derrocarlo, todo ello en el ámbito espacial de la región andaluza (II División Orgánica).----------------------------Analysis of the process of change of mentality of the military men in the period 1931-1936 and of the circunstances that determinate that a few o...

  11. Recrutamento político

    Directory of Open Access Journals (Sweden)

    Pippa Norris

    2013-06-01

    Full Text Available O objetivo principal deste artigo é apresentar uma breve revisão da literatura sobre recrutamento político e oferecer alguns critérios empíricos para análise. A partir de uma perspectiva integrada, nos estabelecemos um modelo de análise que trabalha com a estrutural social e as instituições políticas. O modelo de oferta e demanda foi mobilizado para relacionar os inputs do background social e as possíveis consequências nas instituições. Os dados apresentados provém de uma diversidade de fontes e privilegiaram os processos de inclusão de mulheres em diferentes tipos de democracias e sociedades. Os resultados mostram que somente através da interação da estrutural social com as demandas institucionais é possível conhecer o resultado final da representatividade e os filtros do recrutamento político. Além disso, os dados nos permitiram desvendar um incremento da participação das bases sociais do partido no processo de nominação de candidatos. Concluímos que o processo de seleção de candidatos é uma das mais técnicas e privadas funções dos partidos políticos. O aumento da oferta e o estreitamento da demanda tem promovido uma série de consequências para a democracia representativa, como a inserção de mulheres ao mesmo tempo em que se profissionalizam os partidos políticos..

  12. Getting up to speed with transcription elongation by RNA polymerase II

    NARCIS (Netherlands)

    Jonkers, Iris; Lis, John T.

    Recent advances in sequencing techniques that measure nascent transcripts and that reveal the positioning of RNA polymerase II (Pol II) have shown that the pausing of Pol II in promoter-proximal regions and its release to initiate a phase of productive elongation are key steps in transcription

  13. Structural basis of RNA polymerase II backtracking, arrest and reactivation.

    Science.gov (United States)

    Cheung, Alan C M; Cramer, Patrick

    2011-03-10

    During gene transcription, RNA polymerase (Pol) II moves forwards along DNA and synthesizes messenger RNA. However, at certain DNA sequences, Pol II moves backwards, and such backtracking can arrest transcription. Arrested Pol II is reactivated by transcription factor IIS (TFIIS), which induces RNA cleavage that is required for cell viability. Pol II arrest and reactivation are involved in transcription through nucleosomes and in promoter-proximal gene regulation. Here we present X-ray structures at 3.3 Å resolution of an arrested Saccharomyces cerevisiae Pol II complex with DNA and RNA, and of a reactivation intermediate that additionally contains TFIIS. In the arrested complex, eight nucleotides of backtracked RNA bind a conserved 'backtrack site' in the Pol II pore and funnel, trapping the active centre trigger loop and inhibiting mRNA elongation. In the reactivation intermediate, TFIIS locks the trigger loop away from backtracked RNA, displaces RNA from the backtrack site, and complements the polymerase active site with a basic and two acidic residues that may catalyse proton transfers during RNA cleavage. The active site is demarcated from the backtrack site by a 'gating tyrosine' residue that probably delimits backtracking. These results establish the structural basis of Pol II backtracking, arrest and reactivation, and provide a framework for analysing gene regulation during transcription elongation.

  14. The porcine Major Histocompatibility Complex and related paralogous regions: a review

    Directory of Open Access Journals (Sweden)

    Vaiman Marcel

    2000-03-01

    Full Text Available Abstract The physical alignment of the entire region of the pig major histocompatibility complex (MHC has been almost completed. In swine, the MHC is called the SLA (swine leukocyte antigen and most of its class I region has been sequenced. Over one hundred genes have been characterised, including the classical class I and class I-related genes, as well as the class II gene families. These results in swine provide new evidence for the striking conservation during the evolution of a general MHC framework, and are consistent with the location of the class I genes on segments referred to as permissive places within the MHC class I region. Recent results confirm the involvement of the SLA region in numerous quantitative traits.

  15. Functional Characterization of Paralogous Gonadotropin-Releasing Hormone-Type and Corazonin-Type Neuropeptides in an Echinoderm

    Directory of Open Access Journals (Sweden)

    Shi Tian

    2017-09-01

    Full Text Available Homologs of the vertebrate neuropeptide gonadotropin-releasing hormone (GnRH have been identified in invertebrates, including the insect neuropeptide corazonin (CRZ. Recently, we reported the discovery of GnRH-type and CRZ-type signaling systems in an echinoderm, the starfish Asterias rubens, demonstrating that the evolutionary origin of paralogous GnRH-type and CRZ-type neuropeptides can be traced back to the common ancestor of protostomes and deuterostomes. Here, we have investigated the physiological roles of the GnRH-type (ArGnRH and the CRZ-type (ArCRZ neuropeptides in A. rubens, using mRNA in situ hybridization, immunohistochemistry and in vitro pharmacology. ArGnRH precursor (ArGnRHP-expressing cells and ArGnRH-immunoreactive cells and/or processes are present in the radial nerve cords, circumoral nerve ring, digestive system (e.g., cardiac stomach and pyloric stomach, body wall-associated muscle (apical muscle, and appendages (tube feet, terminal tentacle. The general distribution of ArCRZ precursor (ArCRZP-expressing cells is similar to that of ArGnRHP, but with specific local differences. For example, cells expressing ArGnRHP are present in both the ectoneural and hyponeural regions of the radial nerve cords and circumoral nerve ring, whereas cells expressing ArCRZP were only observed in the ectoneural region. In vitro pharmacological experiments revealed that both ArGnRH and ArCRZ cause contraction of cardiac stomach, apical muscle, and tube foot preparations. However, ArGnRH was more potent/effective than ArCRZ as a contractant of the cardiac stomach, whereas ArCRZ was more potent/effective than ArGnRH as a contractant of the apical muscle. These findings demonstrate that both ArGnRH and ArCRZ are myoexcitatory neuropeptides in starfish, but differences in their expression patterns and pharmacological activities are indicative of distinct physiological roles. This is the first study to investigate the physiological roles of both Gn

  16. Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

    Science.gov (United States)

    Li, Shaofang; Vandivier, Lee E.; Tu, Bin; Gao, Lei; Won, So Youn; Li, Shengben; Zheng, Binglian; Gregory, Brian D.

    2015-01-01

    Twenty-four-nucleotide small interfering (si)RNAs are central players in RNA-directed DNA methylation (RdDM), a process that establishes and maintains DNA methylation at transposable elements to ensure genome stability in plants. The plant-specific RNA polymerase IV (Pol IV) is required for siRNA biogenesis and is believed to transcribe RdDM loci to produce primary transcripts that are converted to double-stranded RNAs (dsRNAs) by RDR2 to serve as siRNA precursors. Yet, no such siRNA precursor transcripts have ever been reported. Here, through genome-wide profiling of RNAs in genotypes that compromise the processing of siRNA precursors, we were able to identify Pol IV/RDR2-dependent transcripts from tens of thousands of loci. We show that Pol IV/RDR2-dependent transcripts correspond to both DNA strands, whereas the RNA polymerase II (Pol II)-dependent transcripts produced upon derepression of the loci are derived primarily from one strand. We also show that Pol IV/RDR2-dependent transcripts have a 5′ monophosphate, lack a poly(A) tail at the 3′ end, and contain no introns; these features distinguish them from Pol II-dependent transcripts. Like Pol II-transcribed genic regions, Pol IV-transcribed regions are flanked by A/T-rich sequences depleted in nucleosomes, which highlights similarities in Pol II- and Pol IV-mediated transcription. Computational analysis of siRNA abundance from various mutants reveals differences in the regulation of siRNA biogenesis at two types of loci that undergo CHH methylation via two different DNA methyltransferases. These findings begin to reveal features of Pol IV/RDR2-mediated transcription at the heart of genome stability in plants. PMID:25414514

  17. MICU2, a paralog of MICU1, resides within the mitochondrial uniporter complex to regulate calcium handling.

    Directory of Open Access Journals (Sweden)

    Molly Plovanich

    Full Text Available Mitochondrial calcium uptake is present in nearly all vertebrate tissues and is believed to be critical in shaping calcium signaling, regulating ATP synthesis and controlling cell death. Calcium uptake occurs through a channel called the uniporter that resides in the inner mitochondrial membrane. Recently, we used comparative genomics to identify MICU1 and MCU as the key regulatory and putative pore-forming subunits of this channel, respectively. Using bioinformatics, we now report that the human genome encodes two additional paralogs of MICU1, which we call MICU2 and MICU3, each of which likely arose by gene duplication and exhibits distinct patterns of organ expression. We demonstrate that MICU1 and MICU2 are expressed in HeLa and HEK293T cells, and provide multiple lines of biochemical evidence that MCU, MICU1 and MICU2 reside within a complex and cross-stabilize each other's protein expression in a cell-type dependent manner. Using in vivo RNAi technology to silence MICU1, MICU2 or both proteins in mouse liver, we observe an additive impairment in calcium handling without adversely impacting mitochondrial respiration or membrane potential. The results identify MICU2 as a new component of the uniporter complex that may contribute to the tissue-specific regulation of this channel.

  18. Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2.

    Directory of Open Access Journals (Sweden)

    Irina M Bochkis

    Full Text Available Gene duplication is a powerful driver of evolution. Newly duplicated genes acquire new roles that are relevant to fitness, or they will be lost over time. A potential path to functional relevance is mutation of the coding sequence leading to the acquisition of novel biochemical properties, as analyzed here for the highly homologous paralogs Foxa1 and Foxa2 transcriptional regulators. We determine by genome-wide location analysis (ChIP-Seq that, although Foxa1 and Foxa2 share a large fraction of binding sites in the liver, each protein also occupies distinct regulatory elements in vivo. Foxa1-only sites are enriched for p53 binding sites and are frequently found near genes important to cell cycle regulation, while Foxa2-restricted sites show only a limited match to the forkhead consensus and are found in genes involved in steroid and lipid metabolism. Thus, Foxa1 and Foxa2, while redundant during development, have evolved divergent roles in the adult liver, ensuring the maintenance of both genes during evolution.

  19. Genome-Wide Location Analysis Reveals Distinct Transcriptional Circuitry by Paralogous Regulators Foxa1 and Foxa2

    Science.gov (United States)

    Bochkis, Irina M.; Schug, Jonathan; Ye, Diana Z.; Kurinna, Svitlana; Stratton, Sabrina A.; Barton, Michelle C.; Kaestner, Klaus H.

    2012-01-01

    Gene duplication is a powerful driver of evolution. Newly duplicated genes acquire new roles that are relevant to fitness, or they will be lost over time. A potential path to functional relevance is mutation of the coding sequence leading to the acquisition of novel biochemical properties, as analyzed here for the highly homologous paralogs Foxa1 and Foxa2 transcriptional regulators. We determine by genome-wide location analysis (ChIP-Seq) that, although Foxa1 and Foxa2 share a large fraction of binding sites in the liver, each protein also occupies distinct regulatory elements in vivo. Foxa1-only sites are enriched for p53 binding sites and are frequently found near genes important to cell cycle regulation, while Foxa2-restricted sites show only a limited match to the forkhead consensus and are found in genes involved in steroid and lipid metabolism. Thus, Foxa1 and Foxa2, while redundant during development, have evolved divergent roles in the adult liver, ensuring the maintenance of both genes during evolution. PMID:22737085

  20. Prion protein paralog doppel protein interacts with alpha-2-macroglobulin: a plausible mechanism for doppel-mediated neurodegeneration.

    Directory of Open Access Journals (Sweden)

    Stefano Benvegnù

    2009-06-01

    Full Text Available Doppel protein (Dpl is a paralog of the cellular form of the prion protein (PrP(C, together sharing common structural and biochemical properties. Unlike PrP(C, which is abundantly expressed throughout the central nervous system (CNS, Dpl protein expression is not detectable in the CNS. Interestingly, its ectopic expression in the brain elicits neurodegeneration in transgenic mice. Here, by combining native isoelectric focusing plus non-denaturing polyacrylamide gel electrophoresis and mass spectrometry analysis, we identified two Dpl binding partners: rat alpha-1-inhibitor-3 (alpha(1I(3 and, by sequence homology, alpha-2-macroglobulin (alpha(2M, two known plasma metalloproteinase inhibitors. Biochemical investigations excluded the direct interaction of PrP(C with either alpha(1I(3 or alpha(2M. Nevertheless, enzyme-linked immunosorbent assays and surface plasmon resonance experiments revealed a high affinity binding occurring between PrP(C and Dpl. In light of these findings, we suggest a mechanism for Dpl-induced neurodegeneration in mice expressing Dpl ectopically in the brain, linked to a withdrawal of natural inhibitors of metalloproteinase such as alpha(2M. Interestingly, alpha(2M has been proven to be a susceptibility factor in Alzheimer's disease, and as our findings imply, it may also play a relevant role in other neurodegenerative disorders, including prion diseases.

  1. Prion protein paralog doppel protein interacts with alpha-2-macroglobulin: a plausible mechanism for doppel-mediated neurodegeneration.

    Science.gov (United States)

    Benvegnù, Stefano; Franciotta, Diego; Sussman, Josh; Bachi, Angela; Zardini, Elisabetta; Torreri, Paola; Govaerts, Cedric; Pizzo, Salvatore; Legname, Giuseppe

    2009-06-18

    Doppel protein (Dpl) is a paralog of the cellular form of the prion protein (PrP(C)), together sharing common structural and biochemical properties. Unlike PrP(C), which is abundantly expressed throughout the central nervous system (CNS), Dpl protein expression is not detectable in the CNS. Interestingly, its ectopic expression in the brain elicits neurodegeneration in transgenic mice. Here, by combining native isoelectric focusing plus non-denaturing polyacrylamide gel electrophoresis and mass spectrometry analysis, we identified two Dpl binding partners: rat alpha-1-inhibitor-3 (alpha(1)I(3)) and, by sequence homology, alpha-2-macroglobulin (alpha(2)M), two known plasma metalloproteinase inhibitors. Biochemical investigations excluded the direct interaction of PrP(C) with either alpha(1)I(3) or alpha(2)M. Nevertheless, enzyme-linked immunosorbent assays and surface plasmon resonance experiments revealed a high affinity binding occurring between PrP(C) and Dpl. In light of these findings, we suggest a mechanism for Dpl-induced neurodegeneration in mice expressing Dpl ectopically in the brain, linked to a withdrawal of natural inhibitors of metalloproteinase such as alpha(2)M. Interestingly, alpha(2)M has been proven to be a susceptibility factor in Alzheimer's disease, and as our findings imply, it may also play a relevant role in other neurodegenerative disorders, including prion diseases.

  2. Functional studies of heading date-related gene TaPRR73, a paralog of Ppd1 in common wheat

    Directory of Open Access Journals (Sweden)

    Wenping eZhang

    2016-06-01

    Full Text Available Photoperiod response-related genes play a crucial role in duration of the plant growth. In this study, we focused on TaPRR73, a paralog of Green Revolution gene Ppd1 (TaPRR37. We found that overexpression of the truncated TaPRR73 form lacking part of the N-terminal PR domain in transgenic rice promoted heading under long day conditions. Association analysis in common wheat verified that TaPRR73 was an important agronomic photoperiod response gene that significantly affected heading date and plant height; expression analysis proved that specific alleles of TaPRR73-A1 had highly expressed levels in earlier heading lines; the distribution of haplotypes indicated that one of these alleles had been selected in breeding programs. Our results demonstrated that TaPRR73 contributed to regulation of heading date in wheat and could be useful in wheat breeding and in broadening adaptation of the crop to new regions.

  3. Parallel reduction in expression, but no loss of functional constraint, in two opsin paralogs within cave populations of Gammarus minus (Crustacea: Amphipoda)

    Science.gov (United States)

    2013-01-01

    Background Gammarus minus, a freshwater amphipod living in the cave and surface streams in the eastern USA, is a premier candidate for studying the evolution of troglomorphic traits such as pigmentation loss, elongated appendages, and reduced eyes. In G. minus, multiple pairs of genetically related, physically proximate cave and surface populations exist which exhibit a high degree of intraspecific morphological divergence. The morphology, ecology, and genetic structure of these sister populations are well characterized, yet the genetic basis of their morphological divergence remains unknown. Results We used degenerate PCR primers designed to amplify opsin genes within the subphylum Crustacea and discovered two distinct opsin paralogs (average inter-paralog protein divergence ≈ 20%) in the genome of three independently derived pairs of G. minus cave and surface populations. Both opsin paralogs were found to be related to other crustacean middle wavelength sensitive opsins. Low levels of nucleotide sequence variation (< 1% within populations) were detected in both opsin genes, regardless of habitat, and dN/dS ratios did not indicate a relaxation of functional constraint in the cave populations with reduced or absent eyes. Maximum likelihood analyses using codon-based models also did not detect a relaxation of functional constraint in the cave lineages. We quantified expression level of both opsin genes and found that the expression of both paralogs was significantly reduced in all three cave populations relative to their sister surface populations. Conclusions The concordantly lowered expression level of both opsin genes in cave populations of G. minus compared to sister surface populations, combined with evidence for persistent purifying selection in the cave populations, is consistent with an unspecified pleiotropic function of opsin proteins. Our results indicate that phototransduction proteins such as opsins may have retained their function in cave

  4. Exploiting an Asp-Glu "switch" in glycogen synthase kinase 3 to design paralog-selective inhibitors for use in acute myeloid leukemia.

    Science.gov (United States)

    Wagner, Florence F; Benajiba, Lina; Campbell, Arthur J; Weïwer, Michel; Sacher, Joshua R; Gale, Jennifer P; Ross, Linda; Puissant, Alexandre; Alexe, Gabriela; Conway, Amy; Back, Morgan; Pikman, Yana; Galinsky, Ilene; DeAngelo, Daniel J; Stone, Richard M; Kaya, Taner; Shi, Xi; Robers, Matthew B; Machleidt, Thomas; Wilkinson, Jennifer; Hermine, Olivier; Kung, Andrew; Stein, Adam J; Lakshminarasimhan, Damodharan; Hemann, Michael T; Scolnick, Edward; Zhang, Yan-Ling; Pan, Jen Q; Stegmaier, Kimberly; Holson, Edward B

    2018-03-07

    Glycogen synthase kinase 3 (GSK3), a key regulatory kinase in the wingless-type MMTV integration site family (WNT) pathway, is a therapeutic target of interest in many diseases. Although dual GSK3α/β inhibitors have entered clinical trials, none has successfully translated to clinical application. Mechanism-based toxicities, driven in part by the inhibition of both GSK3 paralogs and subsequent β-catenin stabilization, are a concern in the translation of this target class because mutations and overexpression of β-catenin are associated with many cancers. Knockdown of GSK3α or GSK3β individually does not increase β-catenin and offers a conceptual resolution to targeting GSK3: paralog-selective inhibition. However, inadequate chemical tools exist. The design of selective adenosine triphosphate (ATP)-competitive inhibitors poses a drug discovery challenge due to the high homology (95% identity and 100% similarity) in this binding domain. Taking advantage of an Asp 133 →Glu 196 "switch" in their kinase hinge, we present a rational design strategy toward the discovery of paralog-selective GSK3 inhibitors. These GSK3α- and GSK3β-selective inhibitors provide insights into GSK3 targeting in acute myeloid leukemia (AML), where GSK3α was identified as a therapeutic target using genetic approaches. The GSK3α-selective compound BRD0705 inhibits kinase function and does not stabilize β-catenin, mitigating potential neoplastic concerns. BRD0705 induces myeloid differentiation and impairs colony formation in AML cells, with no apparent effect on normal hematopoietic cells. Moreover, BRD0705 impairs leukemia initiation and prolongs survival in AML mouse models. These studies demonstrate feasibility of paralog-selective GSK3α inhibition, offering a promising therapeutic approach in AML. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

  5. Serie Umbral Político - Num 2.

    OpenAIRE

    Equipo Programa de Estudios de Opinión

    2005-01-01

    Este segundo número de Umbral Político sigue la senda de esa pregunta, que planteamos en el primer número: "- ¿A dónde vas Costa Rica?" Pues con él lo que buscamos es establecer un diálogo que dilucide problemas, propicie refl exiones y genere propuestas, en ese proceso colectivo y nacional de construcción de país que se nos impone como imperativo cívico. En éste número: I. Democracia, incertidumbre y abstencionismo Democracia e incertidumbre Incertidumbre y abstencionismoII. Un esfuerz...

  6. On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.

    Directory of Open Access Journals (Sweden)

    Paul D Thomas

    Full Text Available A recent paper (Nehrt et al., PLoS Comput. Biol. 7:e1002073, 2011 has proposed a metric for the "functional similarity" between two genes that uses only the Gene Ontology (GO annotations directly derived from published experimental results. Applying this metric, the authors concluded that paralogous genes within the mouse genome or the human genome are more functionally similar on average than orthologous genes between these genomes, an unexpected result with broad implications if true. We suggest, based on both theoretical and empirical considerations, that this proposed metric should not be interpreted as a functional similarity, and therefore cannot be used to support any conclusions about the "ortholog conjecture" (or, more properly, the "ortholog functional conservation hypothesis". First, we reexamine the case studies presented by Nehrt et al. as examples of orthologs with divergent functions, and come to a very different conclusion: they actually exemplify how GO annotations for orthologous genes provide complementary information about conserved biological functions. We then show that there is a global ascertainment bias in the experiment-based GO annotations for human and mouse genes: particular types of experiments tend to be performed in different model organisms. We conclude that the reported statistical differences in annotations between pairs of orthologous genes do not reflect differences in biological function, but rather complementarity in experimental approaches. Our results underscore two general considerations for researchers proposing novel types of analysis based on the GO: 1 that GO annotations are often incomplete, potentially in a biased manner, and subject to an "open world assumption" (absence of an annotation does not imply absence of a function, and 2 that conclusions drawn from a novel, large-scale GO analysis should whenever possible be supported by careful, in-depth examination of examples, to help ensure the

  7. Mouse Obox and Crxos modulate preimplantation transcriptional profiles revealing similarity between paralogous mouse and human homeobox genes

    Directory of Open Access Journals (Sweden)

    Amy H. Royall

    2018-01-01

    Full Text Available Abstract Background ETCHbox genes are eutherian-specific homeobox genes expressed during preimplantation development at a time when the first cell lineage decisions are being made. The mouse has an unusual repertoire of ETCHbox genes with several gene families lost in evolution and the remaining two, Crxos and Obox, greatly divergent in sequence and number. Each has undergone duplication to give a double homeodomain Crxos locus and a large cluster of over 60 Obox loci. The gene content differences between species raise important questions about how evolution can tolerate loss of genes implicated in key developmental events. Results We find that Crxos internal duplication occurred in the mouse lineage, while Obox duplication was stepwise, generating subgroups with distinct sequence and expression. Ectopic expression of three Obox genes and a Crxos transcript in primary mouse embryonic cells followed by transcriptome sequencing allowed investigation into their functional roles. We find distinct transcriptomic influences for different Obox subgroups and Crxos, including modulation of genes related to zygotic genome activation and preparation for blastocyst formation. Comparison with similar experiments performed using human homeobox genes reveals striking overlap between genes downstream of mouse Crxos and genes downstream of human ARGFX. Conclusions Mouse Crxos and human ARGFX homeobox genes are paralogous rather than orthologous, yet they have evolved to regulate a common set of genes. This suggests there was compensation of function alongside gene loss through co-option of a different locus. Functional compensation by non-orthologous genes with dissimilar sequences is unusual but may indicate underlying distributed robustness. Compensation may be driven by the strong evolutionary pressure for successful early embryo development.

  8. Functional Interplay of Two Paralogs Encoding SWI/SNF Chromatin-Remodeling Accessory Subunits During Caenorhabditis elegans Development.

    Science.gov (United States)

    Ertl, Iris; Porta-de-la-Riva, Montserrat; Gómez-Orte, Eva; Rubio-Peña, Karinna; Aristizábal-Corrales, David; Cornes, Eric; Fontrodona, Laura; Osteikoetxea, Xabier; Ayuso, Cristina; Askjaer, Peter; Cabello, Juan; Cerón, Julián

    2016-03-01

    SWI/SNF ATP-dependent chromatin-remodeling complexes have been related to several cellular processes such as transcription, regulation of chromosomal stability, and DNA repair. The Caenorhabditis elegans gene ham-3 (also known as swsn-2.1) and its paralog swsn-2.2 encode accessory subunits of SWI/SNF complexes. Using RNA interference (RNAi) assays and diverse alleles we investigated whether ham-3 and swsn-2.2 have different functions during C. elegans development since they encode proteins that are probably mutually exclusive in a given SWI/SNF complex. We found that ham-3 and swsn-2.2 display similar functions in vulva specification, germline development, and intestinal cell proliferation, but have distinct roles in embryonic development. Accordingly, we detected functional redundancy in some developmental processes and demonstrated by RNA sequencing of RNAi-treated L4 animals that ham-3 and swsn-2.2 regulate the expression of a common subset of genes but also have specific targets. Cell lineage analyses in the embryo revealed hyper-proliferation of intestinal cells in ham-3 null mutants whereas swsn-2.2 is required for proper cell divisions. Using a proteomic approach, we identified SWSN-2.2-interacting proteins needed for early cell divisions, such as SAO-1 and ATX-2, and also nuclear envelope proteins such as MEL-28. swsn-2.2 mutants phenocopy mel-28 loss-of-function, and we observed that SWSN-2.2 and MEL-28 colocalize in mitotic and meiotic chromosomes. Moreover, we demonstrated that SWSN-2.2 is required for correct chromosome segregation and nuclear reassembly after mitosis including recruitment of MEL-28 to the nuclear periphery. Copyright © 2016 by the Genetics Society of America.

  9. YtsJ Has the Major Physiological Role of the Four Paralogous Malic Enzyme Isoforms in Bacillus subtilis†

    Science.gov (United States)

    Lerondel, Guillaume; Doan, Thierry; Zamboni, Nicola; Sauer, Uwe; Aymerich, Stéphane

    2006-01-01

    The Bacillus subtilis genome contains several sets of paralogs. An extreme case is the four putative malic enzyme genes maeA, malS, ytsJ, and mleA. maeA was demonstrated to encode malic enzyme activity, to be inducible by malate, but also to be dispensable for growth on malate. We report systematic experiments to test whether these four genes ensure backup or cover different functions. Analysis of single- and multiple-mutant strains demonstrated that ytsJ has a major physiological role in malate utilization for which none of the other three genes could compensate. In contrast, maeA, malS, and mleA had distinct roles in malate utilization for which they could compensate one another. The four proteins exhibited malic enzyme activity; MalS, MleA, and MaeA exhibited 4- to 90-fold higher activities with NAD+ than with NADP+. YtsJ activity, in contrast, was 70-fold higher with NADP+ than with NAD+, with Km values of 0.055 and 2.8 mM, respectively. lacZ fusions revealed strong transcription of ytsJ, twofold higher in malate than in glucose medium, but weak transcription of malS and mleA. In contrast, mleA was strongly transcribed in complex medium. Metabolic flux analysis confirmed the major role of YtsJ in malate-to-pyruvate interconversion. While overexpression of the NADP-dependent Escherichia coli malic enzyme MaeB did not suppress the growth defect of a ytsJ mutant on malate, overexpression of the transhydrogenase UdhA from E. coli partially suppressed it. These results suggest an additional physiological role of YtsJ beyond that of malate-to-pyruvate conversion. PMID:16788182

  10. Sangres políticas

    Directory of Open Access Journals (Sweden)

    Gabriel Gatti

    2018-03-01

    Full Text Available Trabajamos en las tensiones entre dos continentes en permanente disputa: “sangre” y “política”, “realidad” y “dispositivo”, “naturaleza” y “cultura”. Son viejos asuntos, y viejas tensiones, pero que no dejan de actualizarse y que ahora se manifiestan por doquier en cuestiones como la biometría, los mapas genéticos, la identificación de desaparecidos, las políticas de la identidad indígena o de género o de menores o de drogas, la gestación subrogada o la gestión de la marginalidad. Los diez textos recogidos en este número especial discuten desde una mirada interdisciplinaria sobre la presencia de la sangre —en sus distintas declinaciones— en la definición contemporánea de lo que entendemos por identidad, derechos humanos o ciudadanía.

  11. Mechanisms of backtrack recovery by RNA polymerases I and II.

    Science.gov (United States)

    Lisica, Ana; Engel, Christoph; Jahnel, Marcus; Roldán, Édgar; Galburt, Eric A; Cramer, Patrick; Grill, Stephan W

    2016-03-15

    During DNA transcription, RNA polymerases often adopt inactive backtracked states. Recovery from backtracks can occur by 1D diffusion or cleavage of backtracked RNA, but how polymerases make this choice is unknown. Here, we use single-molecule optical tweezers experiments and stochastic theory to show that the choice of a backtrack recovery mechanism is determined by a kinetic competition between 1D diffusion and RNA cleavage. Notably, RNA polymerase I (Pol I) and Pol II recover from shallow backtracks by 1D diffusion, use RNA cleavage to recover from intermediary depths, and are unable to recover from extensive backtracks. Furthermore, Pol I and Pol II use distinct mechanisms to avoid nonrecoverable backtracking. Pol I is protected by its subunit A12.2, which decreases the rate of 1D diffusion and enables transcript cleavage up to 20 nt. In contrast, Pol II is fully protected through association with the cleavage stimulatory factor TFIIS, which enables rapid recovery from any depth by RNA cleavage. Taken together, we identify distinct backtrack recovery strategies of Pol I and Pol II, shedding light on the evolution of cellular functions of these key enzymes.

  12. Política, marketing e neoliberalismo

    Directory of Open Access Journals (Sweden)

    Pedro Roberto Ferreira

    2004-07-01

    Full Text Available O texto contém uma análise da relação política e sua possível consciência no seu momento específico compreendido pelo processo eleitoral (Londrina - eleições 92. Como este processo eleitoral em nossos dias, nutre-se de algumas técnicas conhecidas como Marketing Político-Eleitoral, e de como estas, contribuem para uma dinâmica de esvaziamento da vida política propriamente dita. Procura ainda, conectar esse esvaziamento político e suas consequências, com o avanço da concepção neoliberal cujo ápice parece fazer coincidir a política como mais uma manifestação de Mercado.

  13. Molecular characterization of BrMYB28 and BrMYB29 paralogous transcription factors involved in the regulation of aliphatic glucosinolate profiles in Brassica rapa ssp. pekinensis.

    Science.gov (United States)

    Baskar, Venkidasamy; Park, Se Won

    2015-07-01

    Glucosinolates (GSL) are one of the major secondary metabolites of the Brassicaceae family. In the present study, we aim at characterizing the multiple paralogs of aliphatic GSL regulators, such as BrMYB28 and BrMYB29 genes in Brassica rapa ssp. pekinensis, by quantitative real-time PCR (qRT-PCR) analysis in different tissues and at various developmental stages. An overlapping gene expression pattern between the BrMYBs as well as their downstream genes (DSGs) was found at different developmental stages. Among the BrMYB28 and BrMYB29 paralogous genes, the BrMYB28.3 and BrMYB29.1 genes were dominantly expressed in most of the developmental stages, compared to the other paralogs of the BrMYB genes. Furthermore, the differential expression pattern of the BrMYBs was observed under various stress treatments. Interestingly, BrMYB28.2 showed the least expression in most developmental stages, while its expression was remarkably high in different stress conditions. More specifically, the BrMYB28.2, BrMYB28.3, and BrMYB29.1 genes were highly responsive to various abiotic and biotic stresses, further indicating their possible role in stress tolerance. Moreover, the in silico cis motif analysis in the upstream regulatory regions of BrMYBs showed the presence of various putative stress-specific motifs, which further indicated their responsiveness to biotic and abiotic stresses. These observations suggest that the dominantly expressed BrMYBs, both in different developmental stages and under various stress treatments (BrMYB28.3 and BrMYB29.1), may be potential candidate genes for altering the GSL level through genetic modification studies in B. rapa ssp. pekinensis. Copyright © 2015. Published by Elsevier SAS.

  14. Ionizing radiation-induced foci formation of mammalian Rad51 and Rad54 depends on the Rad51 paralogs, but not on Rad52

    International Nuclear Information System (INIS)

    Veelen, Lieneke R. van; Essers, Jeroen; Rakt, Mandy W.M.M. van de; Odijk, Hanny; Pastink, Albert; Zdzienicka, MaIgorzata Z.; Paulusma, Coen C.; Kanaar, Roland

    2005-01-01

    Homologous recombination is of major importance for the prevention of genomic instability during chromosome duplication and repair of DNA damage, especially double-strand breaks. Biochemical experiments have revealed that during the process of homologous recombination the RAD52 group proteins, including Rad51, Rad52 and Rad54, are involved in an essential step: formation of a joint molecule between the broken DNA and the intact repair template. Accessory proteins for this reaction include the Rad51 paralogs and BRCA2. The significance of homologous recombination for the cell is underscored by the evolutionary conservation of the Rad51, Rad52 and Rad54 proteins from yeast to humans. Upon treatment of cells with ionizing radiation, the RAD52 group proteins accumulate at the sites of DNA damage into so-called foci. For the yeast Saccharomyces cerevisiae, foci formation of Rad51 and Rad54 is abrogated in the absence of Rad52, while Rad51 foci formation does occur in the absence of the Rad51 paralog Rad55. By contrast, we show here that in mammalian cells, Rad52 is not required for foci formation of Rad51 and Rad54. Furthermore, radiation-induced foci formation of Rad51 and Rad54 is impaired in all Rad51 paralog and BRCA2 mutant cell lines tested, while Rad52 foci formation is not influenced by a mutation in any of these recombination proteins. Despite their evolutionary conservation and biochemical similarities, S. cerevisiae and mammalian Rad52 appear to differentially contribute to the DNA-damage response

  15. On Paralogic Practices

    DEFF Research Database (Denmark)

    Søndergaard, Morten

    2017-01-01

    Whereas Metro-net is a personal and very direct artistic response to the internet as the metaphor of the information terminals of decentralized globalization, All that is Solid Melts Into Data is an almost clinical dissection of the material effects of data (and by inference, the internet...... at how these two concepts actually materialize in the spheres of post-internet citizens. Underneath the dissent and antagonistic attitudes, practices such as these aim to establishing a new, other logic—a para-logic—of things in the culture of ubiquitous information....

  16. From Anomaly to Paralogy

    DEFF Research Database (Denmark)

    Christensen, Ole Ravn; Børsen, Tom

    2009-01-01

    In recent years natural science students' enrolment patterns have changed. Many new study-programmes have emerged with new hot names like nanotechnology, molecular biomedicine, medicinal chemistry, biotechnology, health mathematics, product and design psychology etc. These new study programmes tr...... undertaken by the disciplines of engineering (the applied sciences) for more than a century. Just because somebody makes up new names for what engineers are doing, does not mean that science and technology is changing fundamentally...

  17. Edad y cultura política

    Directory of Open Access Journals (Sweden)

    MANUEL JUSTEL

    1992-01-01

    Full Text Available En este artículo se analiza la evolución de algunos aspectos de la cultura política y democrática durante los años ochenta: información y competencia política, participación política, actitudes hacia los partidos y orientaciones políticas. Los datos proceden de sendas encuestas realizadas en 1980 y 1989. Mediante análisis de cohortes de edad, controlando sexo y nivel de estudios, se comprueba el grado diferencial de expansión de actitudes democráticas en los grupos de edad, controlando sexo y nivel de estudios, se comprueba el grado diferencial de expansión de actitudes democráticas en los grupos de edad, el efecto homogeneizador que conlleva y el influjo estratégico de la educación. En el marco teórico de la socialización política en edad adulta y de las relaciones entre sistema social y sistema político, se interpretan los cambios de actitudes distinguiendo efectos de ciclo vital, de cohorte y de periodo. Al mismo tiempo, se discuten algunas consecuencias políticas del envejecimiento poblacional y se constata de un grado notable de plasticidad actitudinal y de adhesión creciente a la democracia de las cohortes de edad avanzada.

  18. Nonmuscle Myosin II Is Required for Internalization of the Epidermal Growth Factor Receptor and Modulation of Downstream Signaling*

    Science.gov (United States)

    Kim, Jong Hyun; Wang, Aibing; Conti, Mary Anne; Adelstein, Robert S.

    2012-01-01

    Ligand-induced internalization of the epidermal growth factor receptor (EGFR) is an important process for regulating signal transduction, cellular dynamics, and cell-cell communication. Here, we demonstrate that nonmuscle myosin II (NM II) is required for the internalization of the EGFR and to trigger the EGFR-dependent activation of ERK and AKT. The EGFR was identified as a protein that interacts with NM II by co-immunoprecipitation and mass spectrometry analysis. This interaction requires both the regulatory light chain 20 (RLC20) of NM II and the kinase domain of the EGFR. Two paralogs of NM II, NM II-A, and NM II-B can act to internalize the EGFR, depending on the cell type and paralog content of the cell line. Loss (siRNA) or inhibition (25 μm blebbistatin) of NM II attenuates the internalization of the EGFR and impairs EGFR-dependent activation of ERK and AKT. Both internalization of the EGFR and downstream signaling to ERK and AKT can be partially restored in siRNA-treated cells by introduction of wild type (WT) GFP-NM II, but cannot be restored by motor mutant NM II. Taken together, these results suggest that NM II plays a role in the internalization of the EGFR and EGFR-mediated signaling pathways. PMID:22718763

  19. cobalt (ii), nickel (ii)

    African Journals Online (AJOL)

    DR. AMINU

    ABSTRACT. The manganese (II), cobalt (II), nickel (II) and copper (II) complexes of N, N' – bis(benzoin)ethylenediiminato have been prepared and characterized by infrared, elemental analysis, conductivity measurements and solubility. The potentiometric, and elemental analyses studies of the complexes revealed 1:1 ...

  20. The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II

    DEFF Research Database (Denmark)

    Elmlund, Hans; Baraznenok, Vera; Lindahl, Martin

    2006-01-01

    CDK8 (cyclin-dependent kinase 8), along with CycC, Med12, and Med13, form a repressive module (the Cdk8 module) that prevents RNA polymerase II (pol II) interactions with Mediator. Here, we report that the ability of the Cdk8 module to prevent pol II interactions is independent of the Cdk8......-dependent kinase activity. We use electron microscopy and single-particle reconstruction to demonstrate that the Cdk8 module forms a distinct structural entity that binds to the head and middle region of Mediator, thereby sterically blocking interactions with pol II....

  1. RNA polymerase II transcriptional fidelity control and its functional interplay with DNA modifications.

    Science.gov (United States)

    Xu, Liang; Wang, Wei; Chong, Jenny; Shin, Ji Hyun; Xu, Jun; Wang, Dong

    2015-01-01

    Accurate genetic information transfer is essential for life. As a key enzyme involved in the first step of gene expression, RNA polymerase II (Pol II) must maintain high transcriptional fidelity while it reads along DNA template and synthesizes RNA transcript in a stepwise manner during transcription elongation. DNA lesions or modifications may lead to significant changes in transcriptional fidelity or transcription elongation dynamics. In this review, we will summarize recent progress toward understanding the molecular basis of RNA Pol II transcriptional fidelity control and impacts of DNA lesions and modifications on Pol II transcription elongation.

  2. Determination of the loss of function complement C4 exon 29 CT insertion using a novel paralog-specific assay in healthy UK and Spanish populations.

    Science.gov (United States)

    Boteva, Lora; Wu, Yee Ling; Cortes-Hernández, Josefina; Martin, Javier; Vyse, Timothy J; Fernando, Michelle M A

    2011-01-01

    Genetic variants resulting in non-expression of complement C4A and C4B genes are common in healthy European populations and have shown association with a number of diseases, most notably the autoimmune disease, systemic lupus erythematosus. The most frequent cause of a C4 "null" allele, following that of C4 gene copy number variation (CNV), is a non-sense mutation arising from a 2 bp CT insertion into codon 1232 of exon 29. Previous attempts to accurately genotype this polymorphism have not been amenable to high-throughput typing, and have been confounded by failure to account for CNV at this locus, as well as by inability to distinguish between paralogs. We have developed a novel, high-throughput, paralog-specific assay to detect the presence and copy number of this polymorphism. We have genotyped healthy cohorts from the United Kingdom (UK) and Spain. Overall, 30/719 (4.17%) individuals from the UK cohort and 8/449 (1.78%) individuals from the Spanish cohort harboured the CT insertion in a C4A gene. A single Spanish individual possessed a C4B CT insertion. There is weak correlation between the C4 CT insertion and flanking MHC polymorphism. Therefore it is important to note that, as with C4 gene CNV, disease-association due to this variant will be missed by current SNP-based genome-wide association strategies.

  3. BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana.

    Science.gov (United States)

    Hindt, Maria N; Akmakjian, Garo Z; Pivarski, Kara L; Punshon, Tracy; Baxter, Ivan; Salt, David E; Guerinot, Mary Lou

    2017-07-19

    Iron (Fe) is required for plant health, but it can also be toxic when present in excess. Therefore, Fe levels must be tightly controlled. The Arabidopsis thaliana E3 ligase BRUTUS (BTS) is involved in the negative regulation of the Fe deficiency response and we show here that the two A. thaliana BTS paralogs, BTS LIKE1 (BTSL1) and BTS LIKE2 (BTSL2) encode proteins that act redundantly as negative regulators of the Fe deficiency response. Loss of both of these E3 ligases enhances tolerance to Fe deficiency. We further generated a triple mutant with loss of both BTS paralogs and a partial loss of BTS expression that exhibits even greater tolerance to Fe-deficient conditions and increased Fe accumulation without any resulting Fe toxicity effects. Finally, we identified a mutant carrying a novel missense mutation of BTS that exhibits an Fe deficiency response in the root when grown under both Fe-deficient and Fe-sufficient conditions, leading to Fe toxicity when plants are grown under Fe-sufficient conditions.

  4. Fuels and Petroleum, Oil & Lubricants (POL) Laboratories

    Data.gov (United States)

    Federal Laboratory Consortium — The Fuels and Lubricants Technology Team operates and maintains the Fuels and POL Labs at TARDEC. Lab experts adhere to standardized American Society for Testing and...

  5. a la política emancipatoria

    Directory of Open Access Journals (Sweden)

    Benjamín Arditi

    2007-01-01

    Full Text Available Este artículo explora la persistencia de la agitación en políticas de emancipación. Polemiza con la caracterización que hace Bismarck acerca de la política como “arte de lo posible” que fue retomada posteriormente como consigna por el realismo político. También toma distancia de las visiones escatológicas de la emancipación del tipo que asociamos con el jacobinismo. El propósito de esto es desestabilizar las fronteras entre lo posible y lo imposible y entre política revolucionaria y no revolucionaria. La agitación no es un remanente incómodo de la política caliente de antaño sino que sobrevive como periferia interna de la política institucional en democracias liberales. Funciona como un síntoma que impide el cierre de la política en un esquema plenamente normalizado o, lo que es igual, la agitación en combinación con la política emancipatoria hace surgir la “acontecimentalidad” del acontecimiento y permite vislumbrar el papel de lo imposible. Esto me permite introducir posteriormente una definición mínima de emancipación como disputa acerca de si las condiciones actuales impulsan o dañan la igualdad y la libertad, y si otro mundo es o no posible.

  6. Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells.

    Science.gov (United States)

    Danko, Charles G; Hah, Nasun; Luo, Xin; Martins, André L; Core, Leighton; Lis, John T; Siepel, Adam; Kraus, W Lee

    2013-04-25

    RNA polymerase II (Pol II) transcribes hundreds of kilobases of DNA, limiting the production of mRNAs and lncRNAs. We used global run-on sequencing (GRO-seq) to measure the rates of transcription by Pol II following gene activation. Elongation rates vary as much as 4-fold at different genomic loci and in response to two distinct cellular signaling pathways (i.e., 17β-estradiol [E2] and TNF-α). The rates are slowest near the promoter and increase during the first ~15 kb transcribed. Gene body elongation rates correlate with Pol II density, resulting in systematically higher rates of transcript production at genes with higher Pol II density. Pol II dynamics following short inductions indicate that E2 stimulates gene expression by increasing Pol II initiation, whereas TNF-α reduces Pol II residence time at pause sites. Collectively, our results identify previously uncharacterized variation in the rate of transcription and highlight elongation as an important, variable, and regulated rate-limiting step during transcription. Copyright © 2013 Elsevier Inc. All rights reserved.

  7. Different pathways for the nuclear import of yeast RNA polymerase II.

    Science.gov (United States)

    Gómez-Navarro, Natalia; Estruch, Francisco

    2015-11-01

    Recent studies suggest that RNA polymerase II (Pol II) has to be fully assembled before being imported into the nucleus, while other reports indicate a distinct mechanism to import large and small subunits. In yeast, Iwr1 binds to the holoenzyme assembled in the cytoplasm and directs its nuclear entry. However, as IWR1 is not an essential gene, Iwr1-independent pathway(s) for the nuclear import of Pol II must exist. In this paper, we investigate the transport into the nucleus of several large and small Pol II subunits in the mutants of genes involved in Pol II biogenesis. We also analyse subcellular localization in the presence of drugs that can potentially affect Pol II nuclear import. Our results show differences in the cellular distribution between large and small subunits when Pol II biogenesis was impaired. Our data suggest that, in addition to the fully assembled holoenzyme, Pol II subunits can be imported to the nucleus, either independently or as partial assemblies, through different pathways, including passive diffusion for the small subunits. © 2015 Elsevier B.V. All rights reserved.

  8. RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template.

    Science.gov (United States)

    Pai, Dave A; Kaplan, Craig D; Kweon, Hye Kyong; Murakami, Kenji; Andrews, Philip C; Engelke, David R

    2014-05-01

    Many RNAs are known to act as regulators of transcription in eukaryotes, including certain small RNAs that directly inhibit RNA polymerases both in prokaryotes and eukaryotes. We have examined the potential for a variety of RNAs to directly inhibit transcription by yeast RNA polymerase II (Pol II) and find that unstructured RNAs are potent inhibitors of purified yeast Pol II. Inhibition by RNA is achieved by blocking binding of the DNA template and requires binding of the RNA to Pol II prior to open complex formation. RNA is not able to displace a DNA template that is already stably bound to Pol II, nor can RNA inhibit elongating Pol II. Unstructured RNAs are more potent inhibitors than highly structured RNAs and can also block specific transcription initiation in the presence of basal transcription factors. Crosslinking studies with ultraviolet light show that unstructured RNA is most closely associated with the two large subunits of Pol II that comprise the template binding cleft, but the RNA has contacts in a basic residue channel behind the back wall of the active site. These results are distinct from previous observations of specific inhibition by small, structured RNAs in that they demonstrate a sensitivity of the holoenzyme to inhibition by unstructured RNA products that bind to a surface outside the DNA cleft. These results are discussed in terms of the need to prevent inhibition by RNAs, either though sequestration of nascent RNA or preemptive interaction of Pol II with the DNA template.

  9. Rapid Genome-wide Recruitment of RNA Polymerase II Drives Transcription, Splicing, and Translation Events during T Cell Responses

    Directory of Open Access Journals (Sweden)

    Kathrin Davari

    2017-04-01

    Full Text Available Summary: Activation of immune cells results in rapid functional changes, but how such fast changes are accomplished remains enigmatic. By combining time courses of 4sU-seq, RNA-seq, ribosome profiling (RP, and RNA polymerase II (RNA Pol II ChIP-seq during T cell activation, we illustrate genome-wide temporal dynamics for ∼10,000 genes. This approach reveals not only immediate-early and posttranscriptionally regulated genes but also coupled changes in transcription and translation for >90% of genes. Recruitment, rather than release of paused RNA Pol II, primarily mediates transcriptional changes. This coincides with a genome-wide temporary slowdown in cotranscriptional splicing, even for polyadenylated mRNAs that are localized at the chromatin. Subsequent splicing optimization correlates with increasing Ser-2 phosphorylation of the RNA Pol II carboxy-terminal domain (CTD and activation of the positive transcription elongation factor (pTEFb. Thus, rapid de novo recruitment of RNA Pol II dictates the course of events during T cell activation, particularly transcription, splicing, and consequently translation. : Davari et al. visualize global changes in RNA Pol II binding, transcription, splicing, and translation. T cells change their functional program by rapid de novo recruitment of RNA Pol II and coupled changes in transcription and translation. This coincides with fluctuations in RNA Pol II phosphorylation and a temporary reduction in cotranscriptional splicing. Keywords: RNA Pol II, cotranscriptional splicing, T cell activation, ribosome profiling, 4sU, H3K36, Ser-5 RNA Pol II, Ser-2 RNA Pol II, immune response, immediate-early genes

  10. Nature of the Nucleosomal Barrier to RNA Polymerase II | Center for Cancer Research

    Science.gov (United States)

    In the cell, RNA polymerase II (pol II) efficiently transcribes DNA packaged into nucleosomes, but in vitro encounters with the nucleosomes induce catalytic inactivation (arrest) of the pol II core enzyme. To determine potential mechanisms making nucleosomes transparent to transcription in vivo, we analyzed the nature of the nucleosome-induced arrest. We found that the arrests have been detected mostly at positions of strong intrinsic pause sites of DNA.

  11. Overexpression of microRNAs from the miR-17-92 paralog clusters in AIDS-related non-Hodgkin's lymphomas.

    Directory of Open Access Journals (Sweden)

    Dharma R Thapa

    Full Text Available Individuals infected by HIV are at an increased risk for developing non-Hodgkin's lymphomas (AIDS-NHL. In the highly active antiretroviral therapy (HAART era, there has been a significant decline in the incidence of AIDS-associated primary central nervous system lymphoma (PCNSL. However, only a modest decrease in incidence has been reported for other AIDS-NHL subtypes. Thus, AIDS-NHLs remain a significant cause of morbidity and mortality in HIV infected individuals. Recently, much attention has been directed toward the role of miRNAs in cancer, including NHL. Several miRNAs, including those encoded by the miR-17-92 polycistron, have been shown to play significant roles in B cell tumorigenesis. However, the role of miRNAs in NHL in the setting of HIV infection has not been defined.We used quantitative realtime PCR to assess the expression of miRNAs from three different paralog clusters, miR-17-92, miR-106a-363, and miR-106b-25 in 24 cases of AIDS-NHLs representing four tumor types, Burkitt's lymphoma (BL, n = 6, diffuse large B-cell lymphoma (DLBCL, n = 8, primary central nervous system lymphoma (PCNSL, n = 5, and primary effusion lymphoma (PEL, n = 5. We also used microarray analysis to identify a differentiation specific miRNA signature of naïve, germinal center, and memory B cell subsets from tonsils (n = 4. miRNAs from the miR-17-92 paralog clusters were upregulated by B cells, specifically during the GC differentiation stage. We also found overexpression of these miRNA clusters in all four AIDS-NHL subtypes. Finally, we also show that select miRNAs from these clusters (miR-17, miR-106a, and miR-106b inhibited p21 in AIDS-BL and DLBCL cases, thus providing a mechanistic role for these miRNAs in AIDS-NHL pathogenesis.Dysregulation of miR-17-92 paralog clusters is a common feature of AIDS-associated NHLs.

  12. The YsrS Paralog DygS Has the Capacity To Activate Expression of the Yersinia enterocolitica Ysa Type III Secretion System.

    Science.gov (United States)

    Walker, Kimberly A; Griggs, Lauren A; Obrist, Markus; Bode, Addys; Summers, R Patrick; Miller, Virginia L

    2016-06-15

    The Yersinia enterocolitica Ysa type III secretion system (T3SS) is associated with intracellular survival, and, like other characterized T3SSs, it is tightly controlled. Expression of the ysa genes is only detected following growth at low temperatures (26°C) and in high concentrations of sodium chloride (290 mM) in the medium. The YsrSTR phosphorelay (PR) system is required for ysa expression and likely responds to NaCl. During our investigations into the Ysr PR system, we discovered that genes YE3578 and YE3579 are remarkably similar to ysrR and ysrS, respectively, and are probably a consequence of a gene duplication event. The amino acid differences between YE3578 and ysrR are primarily clustered into two short regions. The differences between YE3579 and ysrS are nearly all located in the periplasmic sensing domain; the cytoplasmic domains are 98% identical. We investigated whether these paralogs were capable of activating ysa gene expression. We found that the sensor paralog, named DygS, is capable of compensating for loss of ysrS, but the response regulator paralog, DygR, cannot complement a ysrR gene deletion. In addition, YsrR, but not DygR, interacts with the histidine phosphorelay protein YsrT. Thus, DygS likely activates ysa gene expression in response to a signal other than NaCl and provides an example of a phosphorelay system in which two sensor kinases feed into the same regulatory pathway. All organisms need mechanisms to promote survival in changing environments. Prokaryotic phosphorelay systems are minimally comprised of a histidine kinase (HK) that senses an extracellular stimulus and a response regulator (RR) but can contain three or more proteins. Through gene duplication, a unique hybrid HK was created. We show that, while the hybrid appears to retain all of the phosphorelay functions, it responds to a different signal than the original. Both HKs transmit the signal to the same RR, which activates a promoter that transcribes a set of genes

  13. Analysis of major paralogs encoding the Fra a 1 allergen based on their organ-specificity in Fragaria × ananassa.

    Science.gov (United States)

    Ishibashi, Misaki; Nabe, Takeshi; Nitta, Yoko; Tsuruta, Hiroki; Iduhara, Miho; Uno, Yuichi

    2018-03-01

    Fra a 1 protein in strawberry causes oral allergic syndrome. Over 39 Fra a 1 paralogs have been identified in strawberry genome. Fra a 1.01 is major accumulating protein in edible organs. Strawberry fruits contain allergenic proteins that cause oral allergic syndrome. The hypothesized major allergen is Fra a 1, an ortholog of the birch pollen allergen protein Bet v 1. We organized Fra a 1 genes and analyzed their localizations at the transcriptional and translational levels. In total, 15 new Fra a 1 proteins were identified from the genomic database, increasing the total number of Fra a 1 to 30 proteins encoded by 39 genes. Fra a 1.02 was mostly expressed in receptacles, and Fra a 1.01 in achenes, when analyzed by RNA sequencing. Immunoblotting showed that the Fra a 1.01 protein was broadly accumulated in strawberry organs, while the Fra a 1.02 protein was mostly expressed in receptacles. Recombinant Fra a 1.01 strongly reacted with human IgE. The mRNA and protein expression levels of Fra a 1 did not correlate, indicating the importance of protein levels when evaluating the abundance of allergens in strawberry. Based on the localizations, accumulation levels and reactivity to human IgE, we determined that Fra a 1.01 was the most important allergen, followed by Fra a 1.02, and then other Fra a 1 proteins. The information obtained here will be useful for selecting the target Fra a 1 paralogs when breeding hypoallergenic strawberry.

  14. The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.

    Science.gov (United States)

    Inoue, Masao; Fukui, Kenji; Fujii, Yuki; Nakagawa, Noriko; Yano, Takato; Kuramitsu, Seiki; Masui, Ryoji

    2017-06-09

    Homologous recombination (HR) plays an essential role in the maintenance of genome integrity. RecA/Rad51 paralogs have been recognized as an important factor of HR. Among them, only one bacterial RecA/Rad51 paralog, RadA, is involved in HR as an accessory factor of RecA recombinase. RadA has a unique Lon protease-like domain (LonC) at its C terminus, in addition to a RecA-like ATPase domain. Unlike Lon protease, RadA's LonC domain does not show protease activity but is still essential for RadA-mediated DNA repair. Reconciling these two facts has been difficult because RadA's tertiary structure and molecular function are unknown. Here, we describe the hexameric ring structure of RadA's LonC domain, as determined by X-ray crystallography. The structure revealed the two positively charged regions unique to the LonC domain of RadA are located at the intersubunit cleft and the central hole of a hexameric ring. Surprisingly, a functional domain analysis demonstrated the LonC domain of RadA binds DNA, with site-directed mutagenesis showing that the two positively charged regions are critical for this DNA-binding activity. Interestingly, only the intersubunit cleft was required for the DNA-dependent stimulation of ATPase activity of RadA, and at least the central hole was essential for DNA repair function. Our data provide the structural and functional features of the LonC domain and their function in RadA-mediated DNA repair. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  15. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Ian R Henderson

    2010-10-01

    Full Text Available Eukaryotic DNA cytosine methylation can be used to transcriptionally silence repetitive sequences, including transposons and retroviruses. This silencing is stable between cell generations as cytosine methylation is maintained epigenetically through DNA replication. The Arabidopsis thaliana Dnmt3 cytosine methyltransferase ortholog DOMAINS rearranged methyltransferase2 (DRM2 is required for establishment of small interfering RNA (siRNA directed DNA methylation. In mammals PIWI proteins and piRNA act in a convergently evolved RNA-directed DNA methylation system that is required to repress transposon expression in the germ line. De novo methylation may also be independent of RNA interference and small RNAs, as in Neurospora crassa. Here we identify a clade of catalytically mutated DRM2 paralogs in flowering plant genomes, which in A.thaliana we term domains rearranged methyltransferase3 (DRM3. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs. Although the mammalian catalytically inactive Dnmt3L paralogs act in an analogous manner, phylogenetic analysis indicates that the DRM and Dnmt3 protein families diverged independently in plants and animals. We also show by site-directed mutagenesis that both the DRM2 N-terminal UBA domains and C-terminal methyltransferase domain are required for normal RNA-directed DNA methylation, supporting an essential targeting function for the UBA domains. These results suggest that plant and mammalian RNA-directed DNA methylation systems consist of a combination of ancestral and convergent features.

  16. A visibilidade política na série The Crown

    Directory of Open Access Journals (Sweden)

    Giovana dos Passos Colling

    2018-02-01

    Full Text Available O presente trabalho tem por objetivo compreender como se configura a visibilidade política na trama da série The Crown, produzida pela Netflix, por meio da análise dos três primeiros episódios. A partir do enredo da série, que conta a história da família real britânica na época em que a Raínha Elizabeth II assume o trono e suas novas responsabilidades políticas, é possível perceber e analisar as relações de poder entre a política, a sociedade e a mídia, além de temáticas como imagem pública, escândalo político, relações políticas entre países e discurso midiático. A análise de conteúdo se dá a partir dos autores Gomes, Thompson e Weber. Assim, torna-se perceptível a indissociabilidade entre a mídia, a sociedade e a política para a manutenção de um governo estável, que se utilizando da visibilidade midiática de maneira favorável, estabelece uma comunicação eficiente e uma imagem pública forte e positiva.

  17. Acciones políticas con las que resisten la cultura política tradicional

    Directory of Open Access Journals (Sweden)

    Catalina María Tabares Ochoa

    2013-01-01

    Full Text Available El artículo presenta resultados de la investigación Jóvenes, formación política y participación democrática, cuyo objetivo principal fue identificar los discursos con los cuales los jóvenes reconfiguran la política. La metodología implementada fue la reflexividad dialógica basada en observaciones participantes, talleres de la memoria y entrevistas semiestructuradas, realizadas con jóvenes de Medellín articulados a colectivos artísticos, ecologistas, vegetarianistas, feministas y antimilitaristas. El texto se compone de tres partes: la primera, denominada contextos investigativos, ubica el problema de investigación y el referente teórico de la cultura política en su dimensión interpretativa en la Ciencia Política; la segunda, describe la imagen que del sistema político tienen los jóvenes, para finalmente mostrar cómo con sus acciones debaten y recrean espacios de socialización política como la familia, la iglesia, la escuela, los medios de comunicación y la calle, dotándolos de nuevos sentidos y significados políticos.

  18. Agendamento de Políticas Públicas

    Directory of Open Access Journals (Sweden)

    Rosane Rosa

    2011-07-01

    Full Text Available Aborda-se o conceito de advocacy e contra-agendamento como uma forma de a Sociedade Civil incluir suas causas na mídia, objetivando a tematização e a possibilidade de transformar-se em política pública. Analisa-se a reportagem “Uma conquista longe das ruas”; resultado de um agendamento compartilhado e que, em muitos aspectos, serve de referência para cobertura de políticas públicas sociais.

  19. Políticas y ambiente

    Directory of Open Access Journals (Sweden)

    Nicolás Cuvi

    2013-10-01

    Full Text Available La presente edición de Letras Verdes está dedicada al amplio tema de las interacciones entre las políticas y el ambiente. Las preguntas que planteamos tenían como fin convocar a reflexiones tanto sobre los cambios discursivos en las políticas ambientales en América Latina, como sobre los impactos materiales que éstas han tenido, al suscitar (o no procesos de transformación en la relación que mantenemos con nuestro entorno.

  20. Characterization of Mycobacterium smegmatis PolD2 and PolD1 as RNA/DNA polymerases homologous to the POL domain of bacterial DNA ligase D.

    Science.gov (United States)

    Zhu, Hui; Bhattarai, Hitesh; Yan, Han-Guang; Shuman, Stewart; Glickman, Michael S

    2012-12-21

    Mycobacteria exploit nonhomologous end-joining (NHEJ) to repair DNA double-strand breaks. The core NHEJ machinery comprises the homodimeric DNA end-binding protein Ku and DNA ligase D (LigD), a modular enzyme composed of a C-terminal ATP-dependent ligase domain (LIG), a central 3'-phosphoesterase domain (PE), and an N-terminal polymerase domain (POL). LigD POL is proficient at adding templated and nontemplated deoxynucleotides and ribonucleotides to DNA ends in vitro and is the catalyst in vivo of unfaithful NHEJ events involving nontemplated single-nucleotide additions to blunt DSB ends. Here, we identify two mycobacterial proteins, PolD1 and PolD2, as stand-alone homologues of the LigD POL domain. Biochemical characterization of PolD1 and PolD2 shows that they resemble LigD POL in their monomeric quaternary structures, their ability to add templated and nontemplated nucleotides to primer-templates and blunt ends, and their preference for rNTPs versus dNTPs. Deletion of polD1, polD2, or both from a Mycobacterium smegmatis strain carrying an inactivating mutation in LigD POL failed to reveal a role for PolD1 or PolD2 in templated nucleotide additions during NHEJ of 5'-overhang DSBs or in clastogen resistance. Whereas our results document the existence and characteristics of new stand-alone members of the LigD POL family of RNA/DNA polymerases, they imply that other polymerases can perform fill-in synthesis during mycobacterial NHEJ.

  1. Química general II

    OpenAIRE

    Olba Torrent, Amparo

    2018-01-01

    El document forma part dels materials docents programats mitjançant l'ajut del Servei de Política Lingüística de la Universitat de València Temes de l'assignatura: Química general II del primer curs del Grau de Química Topics of the course: General Chemistry II in the first year of the Degree in Chemistry

  2. Subjetividad política: intersectaciones afrodescendientes

    Directory of Open Access Journals (Sweden)

    Adriana Arroyo-Ortega

    2017-01-01

    Full Text Available En el presente artículo recogemos algunos hallazgos sobre la subjetividad política tomados de una investigación doctoral que se encuentra en curso y que explora la narración de una mujer joven afrodescendiente que, en su acción en un colectivo de la ciudad de Medellín, interroga las prácticas cotidianas de exclusión y precisa los intereses que en su lugar de ubicación ha venido desarrollando. En un primer momento, avanzamos sobre la subjetividad política mediante la reflexión que algunos investigadores e investigadoras han realizado al respecto en relación con lo expresado por esta mujer joven en su acción política, articulado posteriormente con una profundización sobre las implicaciones de la expansión de la subjetividad política de las mujeres jóvenes afrodescendientes, para finalizar con unas líneas conclusivas.

  3. Ingeniero, político, economista, inventor

    Directory of Open Access Journals (Sweden)

    Jimena Montaña Cuéllar

    2001-01-01

    Full Text Available Técnica y utopía. Biografía intelectual y política de Alejandro López, 1876-1940. Alberto Mayor Mora. Fondo Editorial Universidad Eafit, colección Cielos de Arena, Medellín, 2001, 621 págs., il.

  4. El marketing político

    Directory of Open Access Journals (Sweden)

    Alvaro H. Cifuentes G.

    2015-04-01

    Full Text Available RESUMEN Si un candidato desea ser elegido, las técnicas de marketing aplicadas a la política, le son imprescindibles. El marketing político (Politing es el análisis  metódico de los diferentes segmentos que integran el ámbito político de una sociedad y de los factores que puedan modificarlos. Se aplican al candidato, a los votantes, al análisis de la publicidad política, a los simpatizantes, a desconocedores  del partido y a los indecisos. Los candidatos colombianos lo están aplicando, y compañías nuestras exportan servicios  de asesoría de países suramericanos.Promocionar  un candidato implica estructurar una compañía tal como una empresa, aplicando técnicas de ventas, de fijación de cuotas y de planeación estratégica.

  5. Oposición política

    OpenAIRE

    Betancourt, Sergio Raimundo; Centeno, Daniel Félix; Luconi, Leonardo Martín; Viadana, Alejandro Daniel

    1991-01-01

    Fil: Betancourt, Sergio Raimundo. Universidad Nacional de Cuyo. Facultad de Ciencias Políticas y Sociales Fil: Centeno, Daniel Félix. Universidad Nacional de Cuyo. Facultad de Ciencias Políticas y Sociales Fil: Luconi, Leonardo Martín . Universidad Nacional de Cuyo. Facultad de Ciencias Políticas y Sociales Fil: Viadana, Alejandro Daniel. Univer...

  6. Trayectorias de vida, trayectorias políticas: ejercicios situados de política encarnada

    Directory of Open Access Journals (Sweden)

    Gabriela Montiel

    2016-08-01

    Full Text Available rayectorias de vida, trayectorias políticas: ejercicios situados de una política encarnada, es una invitación a repensar la política y lo político ubicando como pauta de enunciación los cuerpos. Corporalidades que no se configuran a solas, sino que son atravesadas constantemente por discursos de poder (orden, alimentación, belleza, deseo, movilidad, agencia, subordinación, represión. Esta tesis la fuimos tejiendo mediante la narrativa de vida de la mano del Método Biográfico (Sautu, 2004, la propuesta de investigación feminista del Conocimiento Situado (Haraway, 1989 y en cuanto al cuerpo teórico para el análisis concretamente la línea de reflexión desde los Feminismos decoloniales en relación a las identidades políticas y movimientos sociales (Flórez, 2010 y el Transfeminismo (Álvarez Castillo, 2014; Preciado, 2013; Solá, 2013; Sentamans, 2013. ¿Qué implica encarnar la política? Responder a esta pregunta es el objetivo a lo largo de este diálogo entre tres compañeras artistas y mi persona, posicionando este cuerpo situado como principal pauta de enunciación.

  7. Divergence of substrate specificity and function in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB.

    Science.gov (United States)

    Latham, John A; Chen, Danqi; Allen, Karen N; Dunaway-Mariano, Debra

    2014-07-29

    The work described in this paper, and its companion paper (Wu, R., Latham, J. A., Chen, D., Farelli, J., Zhao, H., Matthews, K. Allen, K. N., and Dunaway-Mariano, D. (2014) Structure and Catalysis in the Escherichia coli Hotdog-fold Thioesterase Paralogs YdiI and YbdB. Biochemistry, DOI: 10.1021/bi500334v), focuses on the evolution of a pair of paralogous hotdog-fold superfamily thioesterases of E. coli, YbdB and YdiI, which share a high level of sequence identity but perform different biological functions (viz., proofreader of 2,3-dihydroxybenzoyl-holoEntB in the enterobactin biosynthetic pathway and catalyst of the 1,4-dihydoxynapthoyl-CoA hydrolysis step in the menaquinone biosynthetic pathway, respectively). In vitro substrate activity screening of a library of thioester metabolites showed that YbdB displays high activity with benzoyl-holoEntB and benzoyl-CoA substrates, marginal activity with acyl-CoA thioesters, and no activity with 1,4-dihydoxynapthoyl-CoA. YdiI, on the other hand, showed a high level of activity with its physiological substrate, significant activity toward a wide range of acyl-CoA thioesters, and minimal activity toward benzoyl-holoEntB. These results were interpreted as evidence for substrate promiscuity that facilitates YbdB and YdiI evolvability, and divergence in substrate preference, which correlates with their assumed biological function. YdiI support of the menaquinone biosynthetic pathway was confirmed by demonstrating reduced anaerobic growth of the E. coli ydiI-knockout mutant (vs wild-type E. coli) on glucose in the presence of the electron acceptor fumarate. Bioinformatic analysis revealed that a small biological range exists for YbdB orthologs (i.e., limited to Enterobacteriales) relative to that of YdiI orthologs. The divergence in YbdB and YdiI substrate specificity detailed in this paper set the stage for their structural analyses reported in the companion paper.

  8. ACC oxidase genes expressed in the wood-forming tissues of loblolly pine (Pinus taeda L.) include a pair of nearly identical paralogs (NIPs).

    Science.gov (United States)

    Yuan, S; Wang, Y; Dean, J F D

    2010-03-15

    1-Aminocyclopropane-1-carboxylate (ACC) oxidase catalyzes the final reaction of the ethylene biosynthetic pathway, converting the unusual cyclic amino acid, ACC, into ethylene. Past studies have shown a possible link between ethylene and compression wood formation in conifers, but the relationship has received no more than modest study at the gene expression level. In this study, a cDNA clone encoding a putative ACC oxidase, PtACO1, was isolated from a cDNA library produced using mRNA from lignifying xylem of loblolly pine (Pinus taeda) trunk wood. The cDNA clone comprised an open reading frame of 1461 bp encoding a protein of 333 amino acids. Using PCR amplification techniques, a genomic clone corresponding to PtACO1 was isolated and shown to contain three introns with typical GT/AG boundaries defining the splice junctions. The PtACO1 gene product shared 70% identity with an ACC oxidase from European white birch (Betula pendula), and phylogenetic analyses clearly placed the gene product in the ACC oxidase cluster of the Arabidopsis thaliana 2-oxoglutarate-dependent dioxygenase superfamily tree. The PtACO1 sequence was used to identify additional ACC oxidase clones from loblolly pine root cDNA libraries characterized as part of an expressed sequence tag (EST) discovery project. The PtACO1 sequence was also used to recover additional paralogous sequences from genomic DNA, one of which (PtACO2) turned out to be >98% identical to PtACO1 in the nucleotide coding sequence, leading to its classification as a "nearly identical paralog" (NIP). Quantitative PCR analyses showed that the expression level of PtACO1-like transcripts varied in different tissues, as well as in response to hormonal treatments and bending. Possible roles for PtACO1 in compression wood formation in loblolly pine and the discovery of its NIP are discussed in light of these results. 2009 Elsevier B.V. All rights reserved.

  9. Amor y política.

    OpenAIRE

    Hernando Bernal.

    1998-01-01

    Este trabajo pretende hacer una serie de consideraciones que apuntan sobre todo a extraer una definición de lo que es «la política» para el psicoanálisis a partir de una observación que hace Jacques Alain Miller en su texto Lógicas de la vida amorosa sobre cómo Freud introduce una «teoría política» a partir de su texto Psicología de las masas y análisis del yo.En dicho texto Freud hace ver el poder ordenador y apaciguador del amor) significante amo) en la medida en que una masa no es más que ...

  10. La responsabilidad colectiva ante la crisis moral y política colombiana

    Directory of Open Access Journals (Sweden)

    Rodolfo Arango

    2013-01-01

    Full Text Available En este artículo se aborda en tres pasos la pregunta sobre la responsabilidad que el propio pueblo colombiano tiene frente a la situación de crisis que se vive: (i se explorarán algunos factores que pueden ofrecer luces sobre la actual crisis moral y política de Colombia, (ii se analiza la aceptabilidad de extender el concepto de responsabilidad a colectividades políticas y la importancia que dicha extensión tiene para la construcción de una ética pública, y (iii se sugieren algunos campos de acción que permitan aprender de la actual situación y tomar algunas medidas con miras al fortalecimiento de la democracia.

  11. Hans Kelsen: pensador político

    Directory of Open Access Journals (Sweden)

    Sara Lagi

    2011-01-01

    Full Text Available Hasta la publicación de Sobre la esencia y el valor de la democracia, Hans Kelsen era solo conocido como experto en derecho público. El valor de este artículo de Lagi radica en rescatar de la obra kelseniana un aspecto casi por completo olvidado por la crítica, a saber, sus análisis sobre el significado y las características de la democracia parlamentaria en los Estados modernos. Se aborda la cuestión no solo desde el debate teórico sino también desde su contexto histórico¿político. La teoría política de Kelsen es considerada una parte integral de su doctrina central, presentada en Teoría pura del derecho, su obra más conspicua. Un análisis del trabajo sobre la esencia y el valor de la democracia nos restituye la imagen de un Kelsen como original pensador político. Se analizan las dos ediciones de Sobre la esencia y el valor de la democracia (1920¿1929 con estos propósitos: comprender por qué decidió dedicarse a la teoría de la democracia un teórico que rigurosamente defendió la separación de la esfera jurídica respecto de la historia, la filosofía y la política; y por qué no se limitó a explicar la esencia de la democracia sino que decidió concentrarse en clarificar qué se entiende por valor de la democracia.

  12. Novela policiaca, novela política

    Directory of Open Access Journals (Sweden)

    José Colmeiro

    2015-10-01

    Full Text Available Uno de los aspectos más significativos de la evolución de la novela policiaca en España en la última parte del siglo XX ha sido su transformación en un género político, utilizado a menudo como instrumento de observación social y crítica cultural, así como un espacio de resistencia política y subversión ideológica del statu quo por parte de muchos escritores españoles, durante y después del régimen de Franco. La novela negra ha tendido a ofrecer una visión desestabilizadora del crimen en la sociedad, exponiendo los aspectos represivos, el castigo y el control social, centrándose en poner de manifiesto las causas sociales y políticas subyacentes de la delincuencia. En los últimos años, particularmente con la aparición de un número de escritoras de novela negra y de una mayor sensibilidad hacia planteamientos no heteronormativos, el género ha servido también como espacio de exploración, crítica y subversión de los valores patriarcales y del masculinismo característico de los modelos clásicos, como una nueva forma de autocuestionamiento genérico.

  13. 2.4 Å resolution crystal structure of human TRAP1 NM , the Hsp90 paralog in the mitochondrial matrix

    Energy Technology Data Exchange (ETDEWEB)

    Sung, Nuri; Lee, Jungsoon; Kim, Ji-Hyun; Chang, Changsoo; Tsai, Francis T. F.; Lee, Sukyeong

    2016-07-13

    TRAP1 is an organelle-specific Hsp90 paralog that is essential for neoplastic growth. As a member of the Hsp90 family, TRAP1 is presumed to be a general chaperone facilitating the late-stage folding of Hsp90 client proteins in the mitochondrial matrix. Interestingly, TRAP1 cannot replace cytosolic Hsp90 in protein folding, and none of the known Hsp90 co-chaperones are found in mitochondria. Thus, the three-dimensional structure of TRAP1 must feature regulatory elements that are essential to the ATPase activity and chaperone function of TRAP1. Here, the crystal structure of a human TRAP1NMdimer is presented, featuring an intact N-domain and M-domain structure, bound to adenosine 5'-β,γ-imidotriphosphate (ADPNP). The crystal structure together with epitope-mapping results shows that the TRAP1 M-domain loop 1 contacts the neighboring subunit and forms a previously unobserved third dimer interface that mediates the specific interaction with mitochondrial Hsp70.

  14. Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II.

    Science.gov (United States)

    McNamara, Ryan P; Guzman, Carlos; Reeder, Jonathan E; D'Orso, Iván

    2016-03-01

    The transition of RNA polymerase II (Pol II) from transcription initiation into productive elongation in eukaryotic cells is regulated by the P-TEFb kinase, which phosphorylates the C-terminal domain of paused Pol II at promoter-proximal regions. Our recent study found that P-TEFb (in an inhibited state bound to the 7SK snRNP complex) interacts with the KAP1/TRIM28 transcriptional regulator, and that KAP1 and the 7SK snRNP co-occupy most gene promoters containing paused Pol II. Here we provide a detailed experimental description and analysis of the ChIP-seq datasets that have been deposited into Gene Expression Omnibus (GEO): GS72622, so that independent groups can replicate and expand upon these findings. We propose these datasets would provide valuable information for researchers studying mechanisms of transcriptional regulation including Pol II pausing and pause release.

  15. A Conserved Nuclear Cyclophilin Is Required for Both RNA Polymerase II Elongation and Co-transcriptional Splicing in Caenorhabditis elegans.

    Directory of Open Access Journals (Sweden)

    Jeong H Ahn

    2016-08-01

    Full Text Available The elongation phase of transcription by RNA Polymerase II (Pol II involves numerous events that are tightly coordinated, including RNA processing, histone modification, and chromatin remodeling. RNA splicing factors are associated with elongating Pol II, and the interdependent coupling of splicing and elongation has been documented in several systems. Here we identify a conserved, multi-domain cyclophilin family member, SIG-7, as an essential factor for both normal transcription elongation and co-transcriptional splicing. In embryos depleted for SIG-7, RNA levels for over a thousand zygotically expressed genes are substantially reduced, Pol II becomes significantly reduced at the 3' end of genes, marks of transcription elongation are reduced, and unspliced mRNAs accumulate. Our findings suggest that SIG-7 plays a central role in both Pol II elongation and co-transcriptional splicing and may provide an important link for their coordination and regulation.

  16. A Polícia e suas Polícias: Clientela, Hierarquia, Soldado e Bandido

    OpenAIRE

    Azevedo, Erika Ferreira de

    2017-01-01

    Resumo A polícia militar representa um braço do Estado e apresenta-se para a população de forma contundente, ostensiva e, por vezes, brutal, não só para a sociedade como para ela mesma. Através da Análise Institucional do Discurso, a pesquisa aqui relatada teve como objetivo estudar os efeitos de reconhecimento e desconhecimento das relações no trabalho que permeiam o discurso de soldados da polícia militar: como estes falam de seu trabalho e, através desta fala, posicionam-se e posicionam su...

  17. Elecciones 2003: spots políticos y cultura política

    OpenAIRE

    Concepción Virriel

    2004-01-01

    El presente trabajo aborda el tema de las elecciones federales de 2003, en especial el fenómeno del abstencionismo. Para ello se vincula el comportamiento electoral en dichas elecciones con la cultura política, en donde los aspectos básicos son la cultura del fraude heredada de los gobiernos priístas y la redefinición de los partidos políticos ante una nueva coyuntura, y cómo éstos aspectos influyeron en la forma de comunicarse mediante sus spots. El análisis de dichos spots comprende el anál...

  18. Política, violencia y literatura

    Directory of Open Access Journals (Sweden)

    Kohut, Karl

    2002-06-01

    Full Text Available Tomando como punto de partida la opinión general de que América Latina es el continente violento por excelencia y la hipótesis defendida por Ariel Dorfman (1972 se analiza aquí la cuestión de la violencia política, ciñéndose a la literatura de la segunda mitad del siglo XX. Tras discutir las definiciones (divergentes de la violencia propuestas por la filosofía política, se pasa a una fenomenología de la violencia en la literatura, examinando hasta qué punto y en qué sentido ésta sería el carácter distintivo de la literatura latinoamericana. Finalmente, se analiza la metarreflexión sobre la violencia política en la literatura ficcional, centrándose en tres puntos: (1 el (presunto ser violento del mundo latinoamericano, (2 la violencia estatal, y (3 la violencia de la resistencia. Se constata, entre otras cosas, que ha habido una tendencia a atacar la violencia estatal y defender la de la resistencia; tendencia comprensible en tiempos de dictadura, pero que se vuelve problemática bajo una democracia. Dos preguntas cierran este trabajo: hasta qué punto la violencia es un fenómeno de la cultura, que crece en su mismo seno, y no un fenómeno extracultural dirigido contra ella, y hasta dónde la libertad individual y la seguridad cívica pueden ser conciliadas, punto que ha ocupado un lugar central en la discusión internacional después de los acontecimientos del 11 de septiembre.

  19. Proviral HIV-genome-wide and pol-gene specific zinc finger nucleases: usability for targeted HIV gene therapy.

    Science.gov (United States)

    Wayengera, Misaki

    2011-07-22

    Infection with HIV, which culminates in the establishment of a latent proviral reservoir, presents formidable challenges for ultimate cure. Building on the hypothesis that ex-vivo or even in-vivo abolition or disruption of HIV-gene/genome-action by target mutagenesis or excision can irreversibly abrogate HIV's innate fitness to replicate and survive, we previously identified the isoschizomeric bacteria restriction enzymes (REases) AcsI and ApoI as potent cleavers of the HIV-pol gene (11 and 9 times in HIV-1 and 2, respectively). However, both enzymes, along with others found to cleave across the entire HIV-1 genome, slice (SX) at palindromic sequences that are prevalent within the human genome and thereby pose the risk of host genome toxicity. A long-term goal in the field of R-M enzymatic therapeutics has thus been to generate synthetic restriction endonucleases with longer recognition sites limited in specificity to HIV. We aimed (i) to assemble and construct zinc finger arrays and nucleases (ZFN) with either proviral-HIV-pol gene or proviral-HIV-1 whole-genome specificity respectively, and (ii) to advance a model for pre-clinically testing lentiviral vectors (LV) that deliver and transduce either ZFN genotype. First, we computationally generated the consensus sequences of (a) 114 dsDNA-binding zinc finger (Zif) arrays (ZFAs or ZifHIV-pol) and (b) two zinc-finger nucleases (ZFNs) which, unlike the AcsI and ApoI homeodomains, possess specificity to >18 base-pair sequences uniquely present within the HIV-pol gene (ZifHIV-polFN). Another 15 ZFNs targeting >18 bp sequences within the complete HIV-1 proviral genome were constructed (ZifHIV-1FN). Second, a model for constructing lentiviral vectors (LVs) that deliver and transduce a diploid copy of either ZifHIV-polFN or ZifHIV-1FN chimeric genes (termed LV- 2xZifHIV-polFN and LV- 2xZifHIV-1FN, respectively) is proposed. Third, two preclinical models for controlled testing of the safety and efficacy of either of these

  20. La polémica del nacionalismo

    Directory of Open Access Journals (Sweden)

    Germán Posada

    1961-10-01

    Full Text Available La polémica empezó con el artículo de Hernando Téllez, hace veinte días. Con el pretexto de defender a los escritores de su propia generación, a quienes, según él, se viene acusando sistemáticamente de producir una literatura desarraigada y ausente de la vida nacional, Téllez se lanzó a combatir las teorías de " nacionalismo literario'' que actualmente se agitan en Colombia.

  1. Amor y política.

    Directory of Open Access Journals (Sweden)

    Hernando Bernal.

    1998-09-01

    Full Text Available Este trabajo pretende hacer una serie de consideraciones que apuntan sobre todo a extraer una definición de lo que es «la política» para el psicoanálisis a partir de una observación que hace Jacques Alain Miller en su texto Lógicas de la vida amorosa sobre cómo Freud introduce una «teoría política» a partir de su texto Psicología de las masas y análisis del yo.En dicho texto Freud hace ver el poder ordenador y apaciguador del amor significante amo en la medida en que una masa no es más que el amor uniendo a muchas personas y reiterado en cada una de ellas. Las fuerzas armadas y la Iglesia son un buen ejemplo de ello.Pero a pesar de la cohesión amorosa de la humanidad por el poder unificante del amor, resta siempre un malestar. El malestar que persiste en la cultura testimonia del fracaso del amor para resolver el empuje del hombre a satisfacerse con el mal. El significante amo no parece entonces solucionar la paradoja del goce. De aquí que preguntarse sobre adónde vaya el goce en el orden social sea también, para el psicoanálisis, una cuestión política. Jacques- Alain Miller observa, en su texto Lógicas de la vida amorosa, cómo, a partir de la Psicología de las masas y análisis del yo, se puede extraer de Freud una «teoría política», que se vincula muy estrechamente con el amor. Esto porque La Psicología de las masas... enseña sobre el poder ordenador y apaciguador del amor, o mejor, del significante «amor» como significante Amo, lo que se puede escribir de la siguiente manera con ayuda de la «teoría de los discursos» o «teoría del vínculo social» de Lacan.

  2. Políticas de reconhecimento uma novidade das políticas sociais do PT?

    Directory of Open Access Journals (Sweden)

    Krischke, Paulo Jose Duval da Silva

    2004-01-01

    Full Text Available O presente trabalho levanta a hipótese de que as ações de governo do PT estão inovando significativamente na necessária convergência (cf. Fraser, 1999; Honnetch, 2003 entre as tradicionais políticas de redistribuição sócio-econômica, e uma nova diretriz de reconhecimento das diferenças sócio-políticas e culturais. O argumento retoma a trajetória sindical do PT e os efeitos das políticas participativas, nas mudanças da cultura política em várias partes do país. Entre esses efeitos, o crescente apoio à democracia parece relacionar-se ao reconhecimento do direito à diferença e ao pluralismo - principalmente entre a juventude e naqueles locais onde o PT tem governado na última década

  3. Expression of paralogous SEP-, FUL-, AG- and STK-like MADS-box genes in wild-type and peloric Phalaenopsis flowers.

    Directory of Open Access Journals (Sweden)

    Roberta eAcri-Nunes-Miranda

    2014-03-01

    Full Text Available The diverse flowers of Orchidaceae are the result of several major morphological transitions, among them the most studied is the differentiation of the inner median tepal into the labellum, a perianth organ key in pollinator attraction. Type A peloria lacking stamens and with ectopic labella in place of inner lateral tepals are useful for testing models on the genes specifying these organs by comparing their patterns of expression between wild-type and peloric flowers. Previous studies focused on DEFICIENS and GLOBOSA-like MADS-box genes because of their conserved role in perianth and stamen development. The ‘orchid code’ model summarizes this work and shows in Orchidaceae there are four paralogous lineages of DEFICIENS/AP3-like genes differentially expressed in each floral whorl. Experimental tests of this model showed the conserved, higher expression of genes from two specific DEF-like gene lineages is associated with labellum development. The present study tests whether eight MADS-box candidate SEP-, FUL-, AG- and STK-like genes have been specifically duplicated in the Orchidaceae and are also differentially expressed in association with the distinct flower organs of Phalaenopsis hyb. Athens. The gene trees indicate orchid-specific duplications. In a way analogous to what is observed in labellum-specific DEF-like genes, a two-fold increase in the expression of SEP3-like gene PhaMADS7 was measured in the labellum-like inner lateral tepals of peloric flowers. The overlap between SEP3-like and DEF-like genes suggests both are associated with labellum specification and similar positional cues determine their domains of expression. In contrast, the uniform messenger levels of FUL-like genes suggest they are involved in the development of all organs and their expression in the ovary suggests cell differentiation starts before pollination. As previously reported AG-like and STK-like are exclusively expressed in gynostemium and ovary, however no

  4. Regulation of Aerobic Energy Metabolism in Podospora anserina by Two Paralogous Genes Encoding Structurally Different c-Subunits of ATP Synthase.

    Directory of Open Access Journals (Sweden)

    Carole H Sellem

    2016-07-01

    Full Text Available Most of the ATP in living cells is produced by an F-type ATP synthase. This enzyme uses the energy of a transmembrane electrochemical proton gradient to synthesize ATP from ADP and inorganic phosphate. Proton movements across the membrane domain (FO of the ATP synthase drive the rotation of a ring of 8-15 c-subunits, which induces conformational changes in the catalytic part (F1 of the enzyme that ultimately promote ATP synthesis. Two paralogous nuclear genes, called Atp9-5 and Atp9-7, encode structurally different c-subunits in the filamentous fungus Podospora anserina. We have in this study identified differences in the expression pattern for the two genes that correlate with the mitotic activity of cells in vegetative mycelia: Atp9-7 is transcriptionally active in non-proliferating (stationary cells while Atp9-5 is expressed in the cells at the extremity (apex of filaments that divide and are responsible for mycelium growth. When active, the Atp9-5 gene sustains a much higher rate of c-subunit synthesis than Atp9-7. We further show that the ATP9-7 and ATP9-5 proteins have antagonist effects on the longevity of P. anserina. Finally, we provide evidence that the ATP9-5 protein sustains a higher rate of mitochondrial ATP synthesis and yield in ATP molecules per electron transferred to oxygen than the c-subunit encoded by Atp9-7. These findings reveal that the c-subunit genes play a key role in the modulation of ATP synthase production and activity along the life cycle of P. anserina. Such a degree of sophistication for regulating aerobic energy metabolism has not been described before.

  5. Differential responses of the promoters from nearly identical paralogs of loblolly pine (Pinus taeda L.) ACC oxidase to biotic and abiotic stresses in transgenic Arabidopsis thaliana.

    Science.gov (United States)

    Yuan, Shenghua; Dean, Jeffrey F D

    2010-09-01

    Promoters from an ACC oxidase gene (PtACO1) and its nearly identical paralog (NIP) (PtACO2) of loblolly pine (Pinus taeda L.) were recovered from genomic DNA using PCR amplification. Transgenic Arabidopsis plants harboring genetic constructs from which beta-glucuronidase (GUS) expression was driven by the full-length (pACO1:GUS, pACO2:GUS) or truncated (pACO1-1.2:GUS, pACO2-1.2:GUS) loblolly pine ACC oxidase gene promoters displayed distinctive patterns of expression for the different promoter constructs. Both full-length promoter constructs, but not those using truncated promoters, responded to indole-3-acetic acid (IAA) and wounding. Both pACO1:GUS and pACO1-1.2:GUS responded to pathogen attack, while neither version of the pACO2 promoter responded to infection. In the inflorescence stalks, the full-length pACO1 promoter construct, but not the truncated pACO1-1.2:GUS or either pACO2 construct, responded to bending stress. When flowering transgenic Arabidopsis plants were placed in a horizontal position for 48 h, expression from pACO2:GUS, but not the other constructs, was induced on the underside of shoots undergoing gravitropic reorientation. The expression pattern for the pACO2:GUS construct in transgenic Arabidopsis was consistent with what might be expected for a gene promoter involved in the compression wood response in loblolly pine. Although near complete sequence identity between PtACO1 and PtACO2 transcripts prevented quantitation of specific gene products, the promoter expression analyses presented in this study provide strong evidence that the two ACC oxidase genes are likely differentially expressed and responded to different external stimuli in pine. These results are discussed with respect to the potential functional differences between these two genes in loblolly pine.

  6. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species.

    Directory of Open Access Journals (Sweden)

    Michael B Walker

    Full Text Available Arrangements of genes along chromosomes are a product of evolutionary processes, and we can expect that preferable arrangements will prevail over the span of evolutionary time, often being reflected in the non-random clustering of structurally and/or functionally related genes. Such non-random arrangements can arise by two distinct evolutionary processes: duplications of DNA sequences that give rise to clusters of genes sharing both sequence similarity and common sequence features and the migration together of genes related by function, but not by common descent. To provide a background for distinguishing between the two, which is important for future efforts to unravel the evolutionary processes involved, we here provide a description of the extent to which ancestrally related genes are found in proximity.Towards this purpose, we combined information from five genomic datasets, InterPro, SCOP, PANTHER, Ensembl protein families, and Ensembl gene paralogs. The results are provided in publicly available datasets (http://cgd.jax.org/datasets/clustering/paraclustering.shtml describing the extent to which ancestrally related genes are in proximity beyond what is expected by chance (i.e. form paraclusters in the human and nine other vertebrate genomes, as well as the D. melanogaster, C. elegans, A. thaliana, and S. cerevisiae genomes. With the exception of Saccharomyces, paraclusters are a common feature of the genomes we examined. In the human genome they are estimated to include at least 22% of all protein coding genes. Paraclusters are far more prevalent among some gene families than others, are highly species or clade specific and can evolve rapidly, sometimes in response to environmental cues. Altogether, they account for a large portion of the functional clustering previously reported in several genomes.

  7. Evolution of a new function in an esterase: simple amino acid substitutions enable the activity present in the larger paralog, BioH.

    Science.gov (United States)

    Flores, Humberto; Lin, Steven; Contreras-Ferrat, Gabriel; Cronan, John E; Morett, Enrique

    2012-08-01

    Gene duplication and divergence are essential processes for the evolution of new activities. Divergence may be gradual, involving simple amino acid residue substitutions, or drastic, such that larger structural elements are inserted, deleted or rearranged. Vast protein sequence comparisons, supported by some experimental evidence, argue that large structural modifications have been necessary for certain catalytic activities to evolve. However, it is not clear whether these activities could not have been attained by gradual changes. Interestingly, catalytic promiscuity could play a fundamental evolutionary role: a preexistent secondary activity could be increased by simple amino acid residue substitutions that do not affect the enzyme's primary activity. The promiscuous profile of the enzyme may be modified gradually by genetic drift, making a pool of potentially useful activities that can be selected before duplication. In this work, we used random mutagenesis and in vivo selection to evolve the Pseudomonas aeruginosa PAO1 carboxylesterase PA3859, a small protein, to attain the function of BioH, a much larger paralog involved in biotin biosynthesis. BioH was chosen as a target activity because it provides a highly sensitive selection for evolved enzymatic activities by auxotrophy complementation. After only two cycles of directed evolution, mutants with the ability to efficiently complement biotin auxotrophy were selected. The in vivo and in vitro characterization showed that the activity of one of our mutant proteins was similar to that of the wild-type BioH enzyme. Our results demonstrate that it is possible to evolve enzymatic activities present in larger proteins by discrete amino acid substitutions.

  8. Structure of TatA paralog, TatE, suggests a structurally homogeneous form of Tat protein translocase that transports folded proteins of differing diameter.

    Science.gov (United States)

    Baglieri, Jacopo; Beck, Daniel; Vasisht, Nishi; Smith, Corinne J; Robinson, Colin

    2012-03-02

    The twin-arginine translocation (Tat) system transports folded proteins across bacterial and plant thylakoid membranes. Most current models for the translocation mechanism propose the coalescence of a substrate-binding TatABC complex with a separate TatA complex. In Escherichia coli, TatA complexes are widely believed to form the translocation pore, and the size variation of TatA has been linked to the transport of differently sized substrates. Here, we show that the TatA paralog TatE can substitute for TatA and support translocation of Tat substrates including AmiA, AmiC, and TorA. However, TatE is found as much smaller, discrete complexes. Gel filtration and blue native electrophoresis suggest sizes between ∼50 and 110 kDa, and single-particle processing of electron micrographs gives size estimates of 70-90 kDa. Three-dimensional models of the two principal TatE complexes show estimated diameters of 6-8 nm and potential clefts or channels of up to 2.5 nm diameter. The ability of TatE to support translocation of the 90-kDa TorA protein suggests alternative translocation models in which single TatA/E complexes do not contribute the bulk of the translocation channel. The homogeneity of both the TatABC and the TatE complexes further suggests that a discrete Tat translocase can translocate a variety of substrates, presumably through the use of a flexible channel. The presence and possible significance of double- or triple-ring TatE forms is discussed.

  9. Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.

    Directory of Open Access Journals (Sweden)

    Ciira wa Maina

    2014-05-01

    Full Text Available Gene transcription mediated by RNA polymerase II (pol-II is a key step in gene expression. The dynamics of pol-II moving along the transcribed region influence the rate and timing of gene expression. In this work, we present a probabilistic model of transcription dynamics which is fitted to pol-II occupancy time course data measured using ChIP-Seq. The model can be used to estimate transcription speed and to infer the temporal pol-II activity profile at the gene promoter. Model parameters are estimated using either maximum likelihood estimation or via Bayesian inference using Markov chain Monte Carlo sampling. The Bayesian approach provides confidence intervals for parameter estimates and allows the use of priors that capture domain knowledge, e.g. the expected range of transcription speeds, based on previous experiments. The model describes the movement of pol-II down the gene body and can be used to identify the time of induction for transcriptionally engaged genes. By clustering the inferred promoter activity time profiles, we are able to determine which genes respond quickly to stimuli and group genes that share activity profiles and may therefore be co-regulated. We apply our methodology to biological data obtained using ChIP-seq to measure pol-II occupancy genome-wide when MCF-7 human breast cancer cells are treated with estradiol (E2. The transcription speeds we obtain agree with those obtained previously for smaller numbers of genes with the advantage that our approach can be applied genome-wide. We validate the biological significance of the pol-II promoter activity clusters by investigating cluster-specific transcription factor binding patterns and determining canonical pathway enrichment. We find that rapidly induced genes are enriched for both estrogen receptor alpha (ERα and FOXA1 binding in their proximal promoter regions.

  10. Economía Política I, 2010-11

    OpenAIRE

    Antón Pérez, José Ignacio

    2010-01-01

    I. Materiales de clase: Teoría: 0. Conceptos básicos; 1. El problema económico; 2. Las ganancias derivadas del comercio; 3. Elementos básicos de la oferta y la demanda; 4. Elasticidades; 5. La medición del bienestar y la política económica; 6. La empresa: producción, costes y beneficios; 7. Las empresas en los mercados competitivos; Ejercicios: Ejercicios del Tema 2; Ejercicios del Tema 3; Ejercicios del Tema 4; Ejercicios del Tema 5; Ejercicios del Tema 6 y 7; Ejercicios de Repaso. II. Bibli...

  11. Historia del Pensamiento Político Premoderno 05 Fin de la polis. Alejandro Magno

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    Tema 5 El fin de la polis y el surgimiento de nuevas escuelas filosóficas 1.- El declive de la polis griega 2.- Transformación, decadencia y fin de las polis griegas 3.- Filipo II de Macedonia 4.- Alejandro Magno 5.- Helenismo y nuevas concepciones políticas 6.- Epicureismo. Epicuro de Samos 7.- Los cínicos. Ni hogar ni patria, ni ciudad ni ley 8.- El estoicismo. El estoico es un ciudadano del mundo. El cosmopolitismo. La stoa 9.- Las Meditaciones de Marco Aurel...

  12. Van der Pol and the history of relaxation oscillations: Toward the emergence of a concept

    Science.gov (United States)

    Ginoux, Jean-Marc; Letellier, Christophe

    2012-06-01

    Relaxation oscillations are commonly associated with the name of Balthazar van der Pol via his paper (Philosophical Magazine, 1926) in which he apparently introduced this terminology to describe the nonlinear oscillations produced by self-sustained oscillating systems such as a triode circuit. Our aim is to investigate how relaxation oscillations were actually discovered. Browsing the literature from the late 19th century, we identified four self-oscillating systems in which relaxation oscillations have been observed: (i) the series dynamo machine conducted by Gérard-Lescuyer (1880), (ii) the musical arc discovered by Duddell (1901) and investigated by Blondel (1905), (iii) the triode invented by de Forest (1907), and (iv) the multivibrator elaborated by Abraham and Bloch (1917). The differential equation describing such a self-oscillating system was proposed by Poincaré for the musical arc (1908), by Janet for the series dynamo machine (1919), and by Blondel for the triode (1919). Once Janet (1919) established that these three self-oscillating systems can be described by the same equation, van der Pol proposed (1926) a generic dimensionless equation which captures the relevant dynamical properties shared by these systems. Van der Pol's contributions during the period of 1926-1930 were investigated to show how, with Le Corbeiller's help, he popularized the "relaxation oscillations" using the previous experiments as examples and, turned them into a concept.

  13. A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation.

    Science.gov (United States)

    Pikaard, C S; Haag, J R; Pontes, O M F; Blevins, T; Cocklin, R

    2012-01-01

    In Arabidopsis thaliana, nuclear multisubunit RNA polymerase IV (Pol IV) and RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) are required for the biogenesis of 24-nucleotide small interfering RNAs (siRNAs) that direct DNA methylation and transcriptional silencing at target loci transcribed by nuclear multisubunit RNA polymerase V (Pol V). Pol IV and RDR2 physically associate and RDR2's polymerase activity in vitro is dependent on Pol IV. RDR2 transcription of nascent Pol IV transcripts might result in discontinuous second strands, analogous to lagging-strand Okazaki fragments generated during DNA replication. In vitro, Pol V is unable to displace nontemplate DNA during transcriptional elongation. This suggests a need for DNA duplex unwinding by helper proteins, perhaps analogous to the helicase-mediated duplex unwinding that occurs at replication forks to enable leading strand synthesis by DNA polymerase ε. A multiprotein complex (DRD1, DMS3, DMS11, RDM1) known to enable Pol V transcription might facilitate duplex unwinding via ATP-dependent DNA translocase, single-stranded DNA binding, and cohesin-like strand capture activities. These considerations are discussed and incorporated into a "transcription fork" model for Pol IV and Pol V-dependent RNA-directed DNA methylation.

  14. Dinâmica Institucional, Políticas Públicas e o Desempenho Político Ambiental Brasileiro

    Directory of Open Access Journals (Sweden)

    Diego de Freitas Rodrigues

    2011-12-01

    Full Text Available Este estudo buscou analisar os efeitos da interdependência entre instituições políticas e modelos de desenvolvimento no desempenho de políticas ambientais no Brasil. A hipótese central do trabalho é que, dada a interdependência entre os organismos responsáveis pelas políticas ambientais e padrões de desenvolvimento pouco responsivos à complexidade ambiental, ocorre uma dispersão de poder decisório incentivando o modelo de desenvolvimento de alto carbono. Além de revisão da literatura em Políticas Públicas e Economia Ecológica, foram operacionalizadas (1 uma análise do desenho político-institucional brasileiro e (2 o quadro de gastos públicos do governo federal brasileiro com meio ambiente. Dois resultados foram observados: 1o o desenho e as competências das instituições políticas responsáveis pela formulação e implementação de políticas públicas interferem na maior eficiência de políticas ambientais; 2o quanto maior a abertura institucional, maior a tendência de paralisia decisória na formulação e implementação de políticas públicas ambientais.

  15. Croce, Gramsci e a "autonomia da política"

    Directory of Open Access Journals (Sweden)

    Álvaro Bianchi

    2007-11-01

    Full Text Available Na reflexão que Gramsci desenvolveu nos Quaderni del carcere, o tema da autonomia da política ocupa uma importante posição. Foi com base nessa reflexão que Gramsci desenvolveu sua pesquisa a respeito de política e da possibilidade de uma ciência política. Segundo Benedetto Croce, cabia a Nicolau Maquiavel o mérito de ter afirmado pela primeira vez a autonomia da política. Para Croce, essa autonomia permitia estabelecer uma distinção radical entre ética e política e entre "filosofia da política" e "ciência empírica da política". Gramsci tomou criticamente a reflexão croceana como ponto de partida de sua leitura de Maquiavel. O reconhecimento da autonomia da política implicava que esta não poderia ser reduzida à religião ou à ética. Como campo do conhecimento e como atividade, a ciência política e a política tinham regras próprias, que as distinguiam de outras formas do conhecimento e da atividade humana. Mas tal "autonomia" não implicava, para o marxista sardo, uma separação radical entre política e moral. Por essa razão, Gramsci encontrava em Maquiavel um precursor da filosofia da práxis em sentido pleno, ou seja, o criador de uma "ciência-ação revolucionária".

  16. Adeus à política

    Directory of Open Access Journals (Sweden)

    Manoel Mendonça Filho

    2012-01-01

    Full Text Available O artigo trata as questões do "Estado" e da "Política" partindo do exemplo concreto do processo de institucionalização, no Brasil, de práticas profissionais em psicologia reconhecidas como Análise Institucional (vertente grupalista francesa consideravelmente difundida nos últimos 20 anos. Trabalho para expor uma face menos visível da judicialização que funciona ao nível das concepções, crenças e valores entre os operadores dos equipamentos onde se materializam as políticas públicas engendradas pelo excesso legalista. Dentre as modalidades desse apego à lei, toma-se em análise aquela mais próxima de nossas práticas de funcionalismo público marcando o índice de grau máximo de sua institucionalização: a aceitação consensual da competência como critério de legitimidade na operação dos "instrumentos da violência institucional".

  17. Cultura Política na Antiguidade

    Directory of Open Access Journals (Sweden)

    José Petrúcio Farias Júnior

    2009-06-01

    Full Text Available

    Pretendemos discutir nesse artigo algumas implicações do termo cultura política na Antiguidade, especificamente, na sociedade romana imperial. Dessa forma, acreditamos que as considerações que apresentaremos a seguir contribuam para reflexão da utilização desse termo, produto das investigações contemporâneas, sobre os estudos das sociedades antigas. Para a historiadora Profa. Dra. Margarida Maria de Carvalho, tais reflexões representam ainda uma lacuna na historiografia concernente a essa temática. Isso posto, discorreremos, inicialmente, sobre o conceito de cultura e seus desdobramentos para, em seguida, refletirmos sobre o viés interpretativo que fundamenta estudos históricos que se desenvolvem sob o beneplácito da linha de pesquisa intitulada História e Cultura Política.

  18. Política de los intelectuales

    Directory of Open Access Journals (Sweden)

    Todorov Tzevetan

    1998-06-01

    Full Text Available ¿Qué es un intelectual? Por lo que a mi respecta, limito el uso de este término de la siguiente manera: es un estudioso o un artista (categoria que incluye a los escritores que no se contenta con realizar trabajos cientificos o con la creación de una obra de arte, que no se contenta, por lo tanto, con una méra búsqueda de lo verdadero y con un méro desarrollo de lo bello, sino que siente asimismo comprometido con la noción de bienestar público, con los valores de la sociedad en la que vive, es alguien que participa en el debate sobre esos mismos valores. El intelectual así entendido se halla muy lejos del artista o del estudioso a quienes no preocupan en absoluto las dimensiones políticas o éticas de sus obras; muy lejos también, del predicador o del político profesional, que no crean obra alguna.

  19. Política digital: El uso de Facebook en política electoral en Costa Rica (II

    Directory of Open Access Journals (Sweden)

    Roberto Cruz Romero

    2017-07-01

    Full Text Available Se presenta una continuación al trabajo realizado sobre el uso de Internet en procesos electorales, trazando paralelismos y subrayando las diferencias que subyacen entre la significancia simbólica de una elección presidencial y las elecciones municipales para la ciudadanía. Nuevamente, se recurre a un análisis del comportamiento en redes sociales, Facebook específicamente, y un análisis contextual de la realidad sociopolítica percibida en las distintas localidades, y en cada partido. Se estudiaron 26 partidos inscritos solamente a escala cantonal, y se profundizó en los casos de cinco partidos cantonales que obtuvieron la victoria en la respectiva alcaldía. Esto respalda y robustece la línea de investigación que desde el Programa Sociedad de la Información y el Conocimiento (PROSIC se ha trabajado, en aras de presentar el potencial de la tecnología en la democracia, como un elemento más en la construcción de una sociedad basada en la información y el conocimiento

  20. As armadilhas do tripé da política macroeconômica brasileira

    Directory of Open Access Journals (Sweden)

    ANDRÉ NASSIF

    2015-09-01

    Full Text Available RESUMOEste artigo analisa o chamado tripé da política macroeconômica brasileira, que desde 1999 tem combinado um regime de metas de inflação, um regime de taxa de câmbio flutuante e metas de superávit fiscal primário. A menos que o seu modus operandi seja alterado, o tripé não será capaz de libertar a economia brasileira de outra "possível trindade": altas taxas de juros reais, a apreciação da taxa de câmbio real e crescimento econômico muito baixo. Depois de analisar brevemente a base teórica sob o tripé macroeconômico, o artigo mostra por que este regime de política macroeconômica, se avaliado numa perspectiva de longo ou médio prazo, não tem sido capaz de garantir a estabilidade dos preços nem o crescimento econômico. Além da sugestão de romper com a estratégia brasileira de crescer com poupança externa, o documento também sugere três principais formas de mudar o modus operandi do tripé brasileiro: i aumentar o horizonte de tempo para atingir a meta de inflação, como tem sido o experiência da maioria dos países que adotam esse regime de política monetária; ii restaurar o papel anticíclico da política fiscal brasileira; e iii adotar uma combinação de mecanismos que visem prevenir que a moeda brasileira entre em uma nova tendência cíclica da apreciação em termos reais.

  1. O conceito de liberdade política em Montesquieu

    Directory of Open Access Journals (Sweden)

    Maria Beatriz Nizza da Silva

    1969-06-01

    Full Text Available O primeiro passo na análise do conceito de liberdade política, tal como êle se nos apresenta em De l'esprit des lois, deverá assina-lar uma diferença, fundamental para Montesquieu, entre "liberdade filosófica" e "liberdade política".

  2. Historia del Pensamiento Político Premoderno 04 Aristoteles

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    Tema 4 Aristóteles. Política 1.- Aristóteles el Estagirita 2.- Ética y la política en Aristóteles 3.- Las formas de gobierno en La Política 4.- El gobierno democrático es la libertad. 5.- El método Aristotélico. 6.- ¿Qué tipo de Constituciones distingue Aristóteles? 7.- El contexto personal, histórico y político en el que Aristóteles escribe La Política 8.- ¿En que situación se encuentra Grecia en vida de Aristóteles?

  3. A política da Igreja Universal e seus reflexos nos campos religioso e político brasileiros

    Directory of Open Access Journals (Sweden)

    Oro Ari Pedro

    2003-01-01

    Full Text Available Este texto versa sobre a inserção da Igreja Universal do Reino de Deus (IURD na política nacional e seus efeitos nos campos religioso e político. Em razão da eficácia de seu carisma institucional, a Universal procedeu, dentro do próprio grupo religioso, a uma ressemantização do ato de votar em particular e da percepção da política em geral, inscrevendo-os em sua lógica religiosa. Isso é uma importante chave explicativa para o elevado grau de fidelidade de votos e o êxito político cada vez maior constatado nas últimas eleições. Ademais, a prática política da Universal está produzindo um efeito mimético em outra igrejas evangélicas, que tendem a imitar seu modelo de fazer política. Sua inserção política, sobretudo por intermédio do Partido Liberal, não passa despercebida pelos partidos, constituindo-se, assim, em um ator relevante na atual conjuntura política brasileira.

  4. GCPII Variants, Paralogs and Orthologs

    Czech Academy of Sciences Publication Activity Database

    Hlouchová, Klára; Navrátil, Václav; Tykvart, Jan; Šácha, Pavel; Konvalinka, Jan

    2012-01-01

    Roč. 19, č. 9 (2012), s. 1316-1322 ISSN 0929-8673 R&D Projects: GA ČR GAP304/12/0847 Institutional research plan: CEZ:AV0Z40550506 Keywords : PSMA * GCPIII * NAALADase L * splice variants * homologs * PSMAL Subject RIV: CE - Biochemistry Impact factor: 4.070, year: 2012

  5. Pb II

    African Journals Online (AJOL)

    Windows User

    ., 2009) biomaterials. However, the ..... reported for various microorganisms by various researchers (Gong et al., 2005). At biomass ... the increase in initial Pb (II) was also observed for removal of Pb (II) by loofa sponge immobilized Aspergillus.

  6. Expression of paralogous SEP-, FUL-, AG- and STK-like MADS-box genes in wild-type and peloric Phalaenopsis flowers.

    Science.gov (United States)

    Acri-Nunes-Miranda, Roberta; Mondragón-Palomino, Mariana

    2014-01-01

    The diverse flowers of Orchidaceae are the result of several major morphological transitions, among them the most studied is the differentiation of the inner median tepal into the labellum, a perianth organ key in pollinator attraction. Type A peloria lacking stamens and with ectopic labella in place of inner lateral tepals are useful for testing models on the genes specifying these organs by comparing their patterns of expression between wild-type and peloric flowers. Previous studies focused on DEFICIENS- and GLOBOSA-like MADS-box genes because of their conserved role in perianth and stamen development. The "orchid code" model summarizes this work and shows in Orchidaceae there are four paralogous lineages of DEFICIENS/AP3-like genes differentially expressed in each floral whorl. Experimental tests of this model showed the conserved, higher expression of genes from two specific DEF-like gene lineages is associated with labellum development. The present study tests whether eight MADS-box candidate SEP-, FUL-, AG-, and STK-like genes have been specifically duplicated in the Orchidaceae and are also differentially expressed in association with the distinct flower organs of Phalaenopsis hyb. "Athens." The gene trees indicate orchid-specific duplications. In a way analogous to what is observed in labellum-specific DEF-like genes, a two-fold increase in the expression of SEP3-like gene PhaMADS7 was measured in the labellum-like inner lateral tepals of peloric flowers. The overlap between SEP3-like and DEF-like genes suggests both are associated with labellum specification and similar positional cues determine their domains of expression. In contrast, the uniform messenger levels of FUL-like genes suggest they are involved in the development of all organs and their expression in the ovary suggests cell differentiation starts before pollination. As previously reported AG-like and STK-like genes are exclusively expressed in gynostemium and ovary, however no evidence for

  7. Interplay of the serine/threonine-kinase StkP and the paralogs DivIVA and GpsB in pneumococcal cell elongation and division.

    Directory of Open Access Journals (Sweden)

    Aurore Fleurie

    2014-04-01

    Full Text Available Despite years of intensive research, much remains to be discovered to understand the regulatory networks coordinating bacterial cell growth and division. The mechanisms by which Streptococcus pneumoniae achieves its characteristic ellipsoid-cell shape remain largely unknown. In this study, we analyzed the interplay of the cell division paralogs DivIVA and GpsB with the ser/thr kinase StkP. We observed that the deletion of divIVA hindered cell elongation and resulted in cell shortening and rounding. By contrast, the absence of GpsB resulted in hampered cell division and triggered cell elongation. Remarkably, ΔgpsB elongated cells exhibited a helical FtsZ pattern instead of a Z-ring, accompanied by helical patterns for DivIVA and peptidoglycan synthesis. Strikingly, divIVA deletion suppressed the elongated phenotype of ΔgpsB cells. These data suggest that DivIVA promotes cell elongation and that GpsB counteracts it. Analysis of protein-protein interactions revealed that GpsB and DivIVA do not interact with FtsZ but with the cell division protein EzrA, which itself interacts with FtsZ. In addition, GpsB interacts directly with DivIVA. These results are consistent with DivIVA and GpsB acting as a molecular switch to orchestrate peripheral and septal PG synthesis and connecting them with the Z-ring via EzrA. The cellular co-localization of the transpeptidases PBP2x and PBP2b as well as the lipid-flippases FtsW and RodA in ΔgpsB cells further suggest the existence of a single large PG assembly complex. Finally, we show that GpsB is required for septal localization and kinase activity of StkP, and therefore for StkP-dependent phosphorylation of DivIVA. Altogether, we propose that the StkP/DivIVA/GpsB triad finely tunes the two modes of peptidoglycan (peripheral and septal synthesis responsible for the pneumococcal ellipsoid cell shape.

  8. Selection Signatures in the First Exon of Paralogous Receptor Kinase Genes from the Sym2 Region of the Pisum sativum L. Genome

    Directory of Open Access Journals (Sweden)

    Anton S. Sulima

    2017-11-01

    Full Text Available During the initial step of the symbiosis between legumes (Fabaceae and nitrogen-fixing bacteria (rhizobia, the bacterial signal molecule known as the Nod factor (nodulation factor is recognized by plant LysM motif-containing receptor-like kinases (LysM-RLKs. The fifth chromosome of barrel medic (Medicago truncatula Gaertn. contains a cluster of paralogous LysM-RLK genes, one of which is known to participate in symbiosis. In the syntenic region of the pea (Pisum sativum L. genome, three genes have been identified: PsK1 and PsSym37, two symbiosis-related LysM-RLK genes with known sequences, and the unsequenced PsSym2 gene which presumably encodes a LysM-RLK and is associated with increased selectivity to certain Nod factors. In this work, we identified a new gene encoding a LysM-RLK, designated as PsLykX, within the Sym2 genomic region. We sequenced the first exons (corresponding to the protein receptor domain of PsSym37, PsK1, and PsLykX from a large set of pea genotypes of diverse origin. The nucleotide diversity of these fragments was estimated and groups of haplotypes for each gene were revealed. Footprints of selection pressure were detected via comparative analyses of SNP distribution across the first exons of these genes and their homologs MtLYK2, MtLYK3, and MtLYK4 from M. truncatula retrieved from the Medicago Hapmap project. Despite the remarkable similarity among all the studied genes, they exhibited contrasting selection signatures, possibly pointing to diversification of their functions. Signatures of balancing selection were found in LysM1-encoding parts of PsSym37 and PsK1, suggesting that the diversity of these parts may be important for pea LysM-RLKs. The first exons of PsSym37 and PsK1 displayed signatures of purifying selection, as well as MtLYK2 of M. truncatula. Evidence of positive selection affecting primarily LysM domains was found in all three investigated M. truncatula genes, as well as in the pea gene PsLykX. The data

  9. A Polícia e suas Polícias: Clientela, Hierarquia, Soldado e Bandido

    Directory of Open Access Journals (Sweden)

    Erika Ferreira de Azevedo

    Full Text Available Resumo A polícia militar representa um braço do Estado e apresenta-se para a população de forma contundente, ostensiva e, por vezes, brutal, não só para a sociedade como para ela mesma. Através da Análise Institucional do Discurso, a pesquisa aqui relatada teve como objetivo estudar os efeitos de reconhecimento e desconhecimento das relações no trabalho que permeiam o discurso de soldados da polícia militar: como estes falam de seu trabalho e, através desta fala, posicionam-se e posicionam sua clientela, sua hierarquia, seu objeto de trabalho (os “bandidos” e eles próprios. Buscou-se também analisar que lugar a violência ocupou neste discurso. Dez soldados da polícia militar do Estado de São Paulo foram entrevistados e a transcrição destas estrevistas foi analisada. A partir das análises, é possível refletir sobre a dubiedade do verdadeiro objetivo do trabalho policial, deslizando facilmente do cuidado da população desamparada ao cuidado de si, desamparado sob a pressão da farda.

  10. (II) complexes

    African Journals Online (AJOL)

    activities of Schiff base tin (II) complexes. Neelofar1 ... Conclusion: All synthesized Schiff bases and their Tin (II) complexes showed high antimicrobial and ...... Singh HL. Synthesis and characterization of tin (II) complexes of fluorinated Schiff bases derived from amino acids. Spectrochim Acta Part A: Molec Biomolec.

  11. Aonde vai a teoria política?

    Directory of Open Access Journals (Sweden)

    Terence Ball

    2004-11-01

    Full Text Available Neste texto o autor propõe uma reavaliação da Teoria Política, a partir da constatação de sua "morte" e, ao mesmo tempo, da revalorização da disciplina a partir de meados dos anos 1970. A resposta do autor consiste em estabelecer uma distinção entre teorizações de primeira e segunda ordens, isto é, entre reflexões sobre as condições gerais de vida política em comum e o estudo dessas reflexões. Em seguida, o autor indica como os fatores que desvalorizaram a teorização normativa em décadas anteriores - em particular a Ciência Política comportamentalista - declinaram, ao mesmo tempo em que novas questões relativas à vida política em comum (nos Estados Unidos: a Guerra do Vietnã, o movimento pelos direitos civis, o movimento feminista puseram na ordem do dia a disciplina da Teoria Política. O autor encerra o texto lembrando a importância do trabalho em conjunto dos cientistas políticos "empíricos" e dos teóricos políticos "normativos", como sendo relativos a dois aspectos estreitamente relacionados de um mesmo fenômeno - como cientistas e como cidadãos.

  12. Hannah Arendt e a Liberdade na Política

    Directory of Open Access Journals (Sweden)

    Juliana Scherdien Amaral

    2016-12-01

    Full Text Available Hannah Arendt (1906-1975 a partir do "Fenômeno do Totalitarismo", refletiu sobre a importância da política e do agir político, momento em que é necessário que haja “liberdade política”, nos termos dela. A liberdade é entendida por Arendt como a manifestação do ser humano no espaço público, cujo aparecimento é mediado pela linguagem sem coação, na pluralidade, na singularidade, visando a ação. A ausência da liberdade pode provocar experiências nada edificantes para a existência do homem, como os fatos do Nazismo, por exemplo – campos de concentração e de extermínio, a mentira política, entre outros. Nesse sentido, é preciso compreender como Arendt entende a liberdade, momento em que surge a questão: como a liberdade é (ou pode ser condição para a política? Por quê? Na concepção dela, "o sentido da política é a liberdade". Para tanto, ela distingue a liberdade política da filosófica. A liberdade política precisa da presença de seres humanos que pensem e julguem, que escolham e ajam, e seu exercício será efetivo, e não um mero comportamento. Arendt enfatiza, em seus estudos, a liberdade política, pois para ela a liberdade corresponde à possibilidade de agir.

  13. Spatial and Functional Relationships Among Pol V-Associated loci, Pol IV-Dependent siRNAs, and Cytosine Methylation in the Arabidopsis Epigenome

    Energy Technology Data Exchange (ETDEWEB)

    Wierzbicki, A. T.; Cocklin, Ross; Mayampurath, Anoop; Lister, Ryan; Rowley, M. J.; Gregory, Brian D.; Ecker, Joseph R.; Tang, Haixu; Pikaard, Craig S.

    2012-08-15

    Multisubunit RNA polymerases IV and V (Pols IV and V) mediate RNA-directed DNA methylation and transcriptional silencing of retrotransposons and heterochromatic repeats in plants. We identified genomic sites of Pol V occupancy in parallel with siRNA deep sequencing and methylcytosine mapping, comparing wild-type plants with mutants defective for Pol IV, Pol V, or both Pols IV and V. Approximately 60% of Pol V-associated regions encompass regions of 24-nucleotide (nt) siRNA complementarity and cytosine methylation, consistent with cytosine methylation being guided by base-pairing of Pol IV-dependent siRNAs with Pol V transcripts. However, 27% of Pol V peaks do not overlap sites of 24-nt siRNA biogenesis or cytosine methylation, indicating that Pol V alone does not specify sites of cytosine methylation. Surprisingly, the number of methylated CHH motifs, a hallmark of RNA-directed de novo methylation, is similar in wild-type plants and Pol IV or Pol V mutants. In the mutants, methylation is lost at 50%-60% of the CHH sites that are methylated in the wild type but is gained at new CHH positions, primarily in pericentromeric regions. These results indicate that Pol IV and Pol V are not required for cytosine methyltransferase activity but shape the epigenome by guiding CHH methylation to specific genomic sites.

  14. Serie Umbral Político - Num 4.

    OpenAIRE

    Equipo Programa de Estudios de Opinión

    2005-01-01

    Desde el espacio que hemos venido construyendo en Umbral Político, lanzamos una mirada atenta, con espíritu crítico y un profundo sentimiento democrático, a la coyuntura electoral actual. Acompañamos, pues, en primer lugar a la ciudadanía costarricense y a las fuerzas políticas democráticas que participan en este proceso electoral, haciendo un sencillo aporte al proceso de elucidación, información y formación política, que el deber y el amor cívico nos imponen, como universitarios y como ciud...

  15. Historia del pensamiento político moderno (02 Maquiavelo)

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    Tema 2.- Nicolás Maquiavelo. El Príncipe 1. Nicolás Maquiavelo (1469-1527). Nicolás Maquiavelo en el contexto político de la época. 2. Maquiavelo, pensador político. El Galileo de la política.3. Maquiavelo y El príncipe: mito y realidad. Un libro maldito. 4. Hito y mito de la modernidad. 5. Maquiavelo, notario de la realidad de su tiempo. Lectura para comentario en clase. Citas.

  16. Elementos para una política de seguridad urbana

    OpenAIRE

    Sanguino Páez, Antonio

    2016-01-01

    La seguridad es central en la agenda estatal por su relación con derechos ciudadanos en un Estado de Derecho. Este trabajo entra al debate sobre seguridad, aporta elementos en políticas públicas de seguridad urbana y da instrumentos metodológicos para su gestión. Además revisa la política de seguridad de Bogotá en 20 años, examina enfoques, identifica lecciones y formula recomendaciones para una política de seguridad urbana. El fin de la guerra fría y la Doctrina de Seguridad Nacional generó ...

  17. Política em Rousseau: Utopia e Realismo

    OpenAIRE

    Eduardo Leonel Corrêa Cardoso

    2014-01-01

    Diante da diversidade de registros deixados pelo pensador Jean-Jacques Rousseau, a dissertação que se segue propõe analisar sua filosofia política de acordo com duas chaves de leitura política: a utopia e o realismo. Com base nas referências de utopia como transgressão e realismo como redução de danos, encontradas em Renato Janine Ribeiro, pretende-se encontrar uma convergência/aproximação dessas duas tradições de pensamento político no pensamento de Rousseau que se pressupõe transitar justa...

  18. Arma del contrapoder: Humor político y medios

    OpenAIRE

    César Ulloa Tapia

    2008-01-01

    El humor político en los medios de comunicación tiene enorme acogida en las audiencias ya que logra lo que pueden editoriales, análisis académicos y demás espacios de opinión. Es la mejor manera de denunciar, advertir, sancionar e incluso develar lo que hace o deja de hacer el poder político. El humor político está considerado como contrapoder. El periodismo que usa el humor es eficaz, tanto en el mensaje como en su efecto, pues describe las situaciones y recurre a comparaciones y símiles....

  19. Hannah Arendt - Filosofia e Política

    Directory of Open Access Journals (Sweden)

    Eduardo Jardim de Moraes

    2007-12-01

    Full Text Available O artigo apresenta a visão de Hannah Arendt de três momentos em que se configura, na história da filosofia política, a relação entre filosofia e política.O primeiro é o contexto antigo, representado na obra de Platão, quando a filosofia é entendida como metafísica e o conceito central da política é o de autoridade.O segundo remete à moderna crise do conceito metafísico de verdade e do conceito político de autoridade.O terceiro refere-se à leitura de Arendt da obra de Kant e aponta para a relevância da sua teoria do juízo.

  20. Lo social desde la política

    Directory of Open Access Journals (Sweden)

    Darío Salinas Figueredo

    2000-01-01

    Full Text Available Sin desconocer las aproximaciones existentes sobre aspectos fundamentales de la problemática social en América Latina, por ejemplo la pobreza y la índole de política que de manera predominante se formula para encararla, la trayectoria argumental de este trabajo se encamina a mostrar la importancia de trabajar hacia el desarrollo de una perspectiva más amplia. Las referencias empíricas cotejadas no se refieren a hechos puntuales, sino a indicadores que pautan tendencias. Siendo los propósitos aquí reunidos de naturaleza comprensiva, se parte de la premisa según la cual escasamente se problematiza lo social y la propia política social, sus vínculos con la política general, el modelo de desarrollo y el tipo de democracia que la política predominante busca proyectar.

  1. Epidemiologia e políticas públicas

    OpenAIRE

    Barata,Rita Barradas

    2013-01-01

    Este ensaio trata das relações entre a epidemiologia e as políticas públicas, destacando inicialmente a posição da disciplina no campo da saúde coletiva, analisando os impactos de políticas públicas sobre o perfil epidemiológico e as contribuições da epidemiologia para a formulação, implementação e avaliação de políticas públicas de saúde. No primeiro tópico são discutidos os vínculos da disciplina com o campo da saúde coletiva, o modelo de determinantes sociais e de ação política formulados ...

  2. Politeia: la política

    Directory of Open Access Journals (Sweden)

    Manuel Briceño Jáuregui

    1982-07-01

    Full Text Available Se trata solamente de La Política, una versión reciente que está en proceso de publicación. Aristóteles sostiene que la felicidad completa del individuo no es posible sino en la sociedad, especialmente en la polis, que es la sociedad por excelencia. El individuo no puede por sí mismo satisfacer sus necesidad es materiales ni alcanzar la virtud. Para mostrarlo examina primero los diferentes grupos humanos, a partir de la familia; analiza luego las diversas politeias (constituciones de entonces, algunas de las cuales condena. Distingue siguiendo a su maestro Platón tres politeias (formas de gobierno legítimas monarquía, aristocracia, democracia, que dan lugar a su vez a tres desviaciones de las mismas tiranía , oligarquía y demagogia respectivamente. Termina señalando la importancia humana y cívica de la educación.

  3. Política y Geometría

    Directory of Open Access Journals (Sweden)

    Isabel Lillo Villalobos

    2011-04-01

    Full Text Available En este trabajo se aplican conceptos matemáticos al planteamiento deun problema de competición política. Se desarrolla y se implementaademás un método que usa herramientas relacionadas con la geometríacomputacional para la resolución de dicho problema, probándose dicho método en un ejemplo basado en la política española.

  4. Oposición política y juicio del gobierno en las Cortes de 1592-98

    Directory of Open Access Journals (Sweden)

    I. A. A. THOMPSON

    2009-12-01

    Full Text Available RESUMEN: Las Cortes de Castilla de 1592-98 fueron con mucho las más largas del reinado de Felipe II, y las más dificultosas. Su propia duración hacía deseable y, a la vez, facilitaba un esfuerzo extraordinario por parte del gobierno para influir en la actuación de la asamblea. Pero, asimismo, posibilitaba la formación de una oposición organizada con un proyecto político coherente. El análisis detallado de las pautas de voto de los procuradores permite descubrir la existencia de determinadas agrupaciones políticas dentro de las Cortes y poner de manifiesto las bases ideológicas de la política opositora, así como los intereses, tanto en la corte como en las ciudades, que reflejaba en el crespúsculo del gobierno de Felipe II.ABSTRACT: The Cortes of 1592-98 were by far the longest and most difficult parliament of Philip II's reign. That very length both called for and facilitated an unparalleled effort at management by ministers of the Crown. It also made possible the formation within the assembly of an organised opposition with a coherent political programme. The close analysis of the voting behaviour of the proctors permits the reconstruction of definable political groupings within the Cortes and reveals the ideological bases of an oppositional position, as well as pointing to the political interests in the court and in the country which lay behind it as Philip II's government limped to its end.

  5. A questão da continuidade da política macroeconômica entre o governo Cardoso e Lula (1995-2006

    Directory of Open Access Journals (Sweden)

    José Marcos Nayme Novelli

    2010-06-01

    Full Text Available O objetivo do artigo é compreender a continuidade da política macroeconômica entre o governo Cardoso e o governo Lula. O artigo organiza-se em três seções. Na primeira, descreve-se sucintamente a política macroeconômica dos governos Cardoso e Lula. Na segunda, apresenta-se e discute-se o debate da literatura especializada a respeito da hipótese da continuidade da política macroeconômica entre os dois governos. Na terceira seção, é feito um mapeamento dos dirigentes estatais, em que ressaltamos certos aspectos que contribuíram para tal continuidade entre os dois governos. Sem desconsiderar a ação dos beneficiários últimos dos resultados de tal política, identificamos três fatores para explicar a manutenção da política macroeconômica: i a própria estrutura do capitalismo brasileiro e sua inserção na economia mundial; ii a força das idéias ortodoxas difundidas pela mídia e dominantes na equipe econômica (Ministério da Fazenda e Banco Central do Brasil, que foi recrutada no mesmo "campo"; iii a aceitação das "regras do jogo" da democracia pelo Partido dos Trabalhadores (PT.

  6. Cultura política y partidos en Jalisco

    Directory of Open Access Journals (Sweden)

    Carlos Silva Moreno

    2000-01-01

    Full Text Available El presente trabajo es un intento de análisis y reflexión sobre la cultura política de uno de los componentes de todo sistema político que se precie de ser democrático (al menos formalmente: los partidos políticos. Se estudia la cultura política de los partidos políticos en Jalisco a partir del análisis de las representaciones y valores que los partidos políticos tienen sobre la democracia interna, para después contrastarlas con algunas prácticas referentes al liderazgo, dirección y formas de competencia. Debido a que las dimensiones de la democracia son muy amplias y variadas, nos centramos en dos indicadores: la forma en que se da la competencia por los cargos de dirección interna y el carácter de la dirección y el liderazgo.

  7. Mitochondrial DNA replication: a PrimPol perspective

    Science.gov (United States)

    Bailey, Laura J.

    2017-01-01

    PrimPol, (primase–polymerase), the most recently identified eukaryotic polymerase, has roles in both nuclear and mitochondrial DNA maintenance. PrimPol is capable of acting as a DNA polymerase, with the ability to extend primers and also bypass a variety of oxidative and photolesions. In addition, PrimPol also functions as a primase, catalysing the preferential formation of DNA primers in a zinc finger-dependent manner. Although PrimPol's catalytic activities have been uncovered in vitro, we still know little about how and why it is targeted to the mitochondrion and what its key roles are in the maintenance of this multicopy DNA molecule. Unlike nuclear DNA, the mammalian mitochondrial genome is circular and the organelle has many unique proteins essential for its maintenance, presenting a differing environment within which PrimPol must function. Here, we discuss what is currently known about the mechanisms of DNA replication in the mitochondrion, the proteins that carry out these processes and how PrimPol is likely to be involved in assisting this vital cellular process. PMID:28408491

  8. Retrospectiva de la política universitaria en Venezuela

    Directory of Open Access Journals (Sweden)

    Pedro Rodríguez Rojas

    2017-07-01

    Full Text Available El propósito de este artículo es hacer una breve revisión histórica de la política universitaria en Venezuela. La política universitaria en Venezuela tiene como antecedente la Universidad Colonial, pero surge más concretamente a partir de la reforma de 1827. Las universidades son un ente fundamentalmente político. Las universidades no son solamente espacios para el adiestramiento y formación de los profesionales que requiere la nación. Las universidades reflejan a la sociedad a la que pertenecen. Cuando se refiere a la política universitaria venezolana estamos haciendo referencia a las políticas de los respectivos estados y gobiernos en relación al papel que debe jugar las universidades en el desenvolvimiento del país. Pretendemos responder a las preguntas: ¿cómo ha sido la relación entre los gobiernos y las universidades?, ¿Ha existido una política universitaria en Venezuela?, ¿Cómo han evolucionado los principios de equidad, democracia y autonomía en las universidades?, ¿Quién manda en las universidades?¿Qué y quiénes investigan?, ¿Cómo y quién mide la cal

  9. Mentir en la vida política

    Directory of Open Access Journals (Sweden)

    Martínez de la Escalera, Ana María

    2005-06-01

    Full Text Available In this paper the act of lying is seen as a necessary component of the political discourse of the polis. Plato and Arendt are examined as the representatives of a line of thought in which the political realm needs the act of lying. The actual problematic of lying in politics is debated.

    El texto «Mentir en política» aborda el papel que la mentira ha jugado en el lenguaje de la política y el lugar problemático que la Filosofía política le ha otorgado. Se escogen dos autores, Platón y Arendt, para mostrar la necesidad de incluir el discurso mentiroso como un componente esencial de la vida política de la ciudad. En breve, se trata de analizar los límites que la ciudad impone al discurso de lo político y de la política.

  10. Herencia política y económica

    Directory of Open Access Journals (Sweden)

    Wesley C. Marshall

    2011-01-01

    Full Text Available El artículo busca resaltar la relevancia de la vida política de Hilferding en el actual contexto de la crisis financiera global y la probablemente alta radicalización de las posiciones políticas de los países dominantes como resultado de aquella. Como se argumenta, había un alto grado de coherencia entre el pensamiento económico de Hilferding y su actuación política. Justamente por el hecho de que el proyecto socialista alemán durante la Republica Weimar no logró sus objetivos, el pensamiento político y económico de su líder intelectual es altamente relevante en el escenario global actual, donde la crisis económica y descomposición social y política que la acompañen reclaman a los principales políticos del mundo un entendimiento económico más amplio y profundo para que las tragedias de Europa central de los años treinta y cuarenta del siglo XX no se reproduzcan.

  11. Estudo Pré-Clínico de Stent com Polímero Biodegradável e Liberação Abluminal de Sirolimus

    Directory of Open Access Journals (Sweden)

    Celso Kiyochi Takimura

    2014-06-01

    Full Text Available Fundamento: Stents recobertos com polímeros bioabsorvíveis e fármacos apenas na face abluminal podem ser mais seguros que stents farmacológicos com polímeros permanentes. Objetivo: Relatar os resultados experimentais com o stent Inspiron(r, um stent recoberto com polímero bioabsorvível e com liberação de sirolimus apenas da face abluminal, recentemente aprovado para uso clínico. Métodos: Foram implantados 45 stents nas artérias coronárias de 15 porcos e, no 28° dia pós-implante, foram obtidos os resultados angiográficos, de ultrassonografia intracoronária e de histomorfologia. Cinco grupos foram avaliados: Grupo I (nove stents sem recobrimento; Grupo II (nove stents com polímero bioabsorvível nas faces luminal e abluminal; Grupo III (oito stents com polímero bioabsorvível na face abluminal; Grupo IV (nove stents com polímero bioabsorvível e sirolimus nas faces luminal e abluminal; e Grupo V (dez stents com polímero bioabsorvível e sirolimus na face abluminal exclusivamente. Resultados: Observamos, para os Grupos I, II, III, IV e V respectivamente: porcentual de estenose de 29 ± 20; 36 ± 14; 33 ± 19; 22 ± 13 e 26 ± 15 (p = 0,443; perda luminal tardia (em mm de 1,02 ± 0,60; 1,24 ± 0,48; 1,11 ± 0,54; 0,72 ± 0,44 e 0,78 ± 0,39 (p = 0,253; área neointimal (em mm2 de 2,60 ± 1,99; 2,74 ± 1,51; 2,74 ± 1,30; 1,30 ± 1,14 e 0,97 ± 0,84 (p = 0,001; Grupos IV e V versus Grupos I, II e III e porcentual de área neointimal de 35 ± 25; 38 ± 18; 39 ± 19; 19 ± 18 e 15 ± 12 (p = 0,001; Grupo IV e V versus Grupo I, II e III. Os escores de injúria e inflamação foram baixos e sem diferenças entre os grupos. Conclusão: O stent Inspiron(r foi seguro e inibiu significativamente a hiperplasia neointimal observada no 28° dia pós-implante em artérias coronárias porcinas.

  12. Copper (II)

    African Journals Online (AJOL)

    CLEMENT O BEWAJI

    ABSTRACT: A Schiff base was prepared from the reaction of 2 - amino - 3 – methylbutanoic acid and 2, 4 - pentanedione. The reaction of the prepared Schiff base with ethanolic solution of copper (II) chloride formed diaquo bis( N – 2 – amino – 3 - methylbutyl - 2, 4 - pentanedionato) copper (II) complex. The Schiff base is ...

  13. Grupos Políticos Romanos (150-133 a.C.

    Directory of Open Access Journals (Sweden)

    Enrique GARCÍA RIAZA

    2009-11-01

    Full Text Available RESUMEN: Este trabajo analiza el tejido político de la aristocracia romana en los años centrales del siglo II a.C, momento en el que los condicionantes socio-económicos derivados de la expansión mediterránea generan, a un tiempo, un aumento de las reivindicaciones de la plebe, y una importante acentuación de las rivalidades internas en el seno de la aristocracia. Con estas premisas, abordamos el estudio de los grupos de solidaridad política constituidos en torno a determinados individuos y familias. La significación de la figura de Escipión Emiliano no debe ocultar el papel de Mételo Macedónico, de los Calpurnios Pisones y, especialmente, de los Claudio-Fulvios, quienes ensayarán, de forma paralela a Emiliano, una nueva vía de protagonismo basada en la política social. ABSTRACT: This paper deals with the political organization of the Roman aristocracy during the central years of the Ilnd. Century b.C. The Roman conquest of the Mediterranean World, achieved by means of a considerable military effort, was responsible of the development in Italy of new social and economical factors. The growing popular claims and the acentuation of aristocratical competition are the main features of this trend. A prosopographical research makes it clear that some relevant political groups have been traditionaly hidden because of an excesive focus on Scipio Aemilianus. Thus, Metellus Macedonicus, the Calpurnii Pisones and, above all, the Claudii-Fulvii played a decisive paper in the context of political struggle, and some of their members even shared with Scipio an interest in pro-popular politics.

  14. Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells

    Science.gov (United States)

    Descostes, Nicolas; Heidemann, Martin; Spinelli, Lionel; Schüller, Roland; Maqbool, Muhammad Ahmad; Fenouil, Romain; Koch, Frederic; Innocenti, Charlène; Gut, Marta; Gut, Ivo; Eick, Dirk; Andrau, Jean-Christophe

    2014-01-01

    In mammals, the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II consists of 52 conserved heptapeptide repeats containing the consensus sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. Post-translational modifications of the CTD coordinate the transcription cycle and various steps of mRNA maturation. Here we describe Tyr1 phosphorylation (Tyr1P) as a hallmark of promoter (5′ associated) Pol II in mammalian cells, in contrast to what was described in yeast. Tyr1P is predominantly found in antisense orientation at promoters but is also specifically enriched at active enhancers. Mutation of Tyr1 to phenylalanine (Y1F) prevents the formation of the hyper-phosphorylated Pol IIO form, induces degradation of Pol II to the truncated Pol IIB form, and results in a lethal phenotype. Our results suggest that Tyr1P has evolved specialized and essential functions in higher eukaryotes associated with antisense promoter and enhancer transcription, and Pol II stability. DOI: http://dx.doi.org/10.7554/eLife.02105.001 PMID:24842994

  15. O neopragmatismo de Richard Rorty e a reflexão política contemporânea

    Directory of Open Access Journals (Sweden)

    Sérgio Eduardo Ferraz

    2014-03-01

    Full Text Available Este artigo examina o pensamento filosófico de Richard Rorty e, em particular, sua dimensão política, delineando seu tratamento original e crítico de temas centrais à teoria política contemporânea. O objetivo do texto é triplo: chamar a atenção para a fertilidade das ideias de um autor ainda pouco lido no Brasil (i, assinalar as notáveis consequências corrosivas da abordagem rortyana para pressupostos e pretensões fundantes de importantes vertentes da teoria política (ii, e, numa ótica mais positiva, apontar o potencial inspirador dos escritos desse autor para a reflexão sobre novos modos de justificação da democracia (iii. Salientam-se também, nesse último caso, os limites impostos a esse tipo de empreitada político-intelectual. A abordagem empregada consiste em demarcar os contornos gerais do projeto filosófico do autor, seguindo-se uma apresentação dos tópicos mais propriamente políticos da obra de Rorty. Mais especificamente, o artigo explora a proposta rortyana de substituição da noção de verdade pela de justificação, assinalando-se suas consequências para pretensões de verdade, objetividade e universalismo, presentes em diversas linhas da teoria política. Nesse veio, o artigo discute as eventuais implicações relativistas das teses rortyanas, chegando-se, por essa rota, às ideias de contingência, imaginação e persuasão, núcleos conceituais vitais à reflexão em tela. Um breve contraste com posições de autores como Habermas e Rawls, caros ao próprio Rorty, é esboçado no propósito de tornar mais clara a especificidade da abordagem rortyana da política. Transitando, do modo assinalado, por esses tópicos, o texto resulta em um panorama sintético da perspectiva rortyana acerca do que vem a ser, contemporaneamente, uma "política democrática", liberta de "universalismos" e "objetividades", na qual ganham estatuto decisivo questões de justificação, tolerância e coexist

  16. Estado e planejamento: o plano de metas do governo de Santa Catarina (1961 – 1970 – PLAMEG i e ii – enquanto instrumento de política desenvolvimentista State and planning: ‘PLAMEG i’ and ‘PLAMEG ii’ as instruments to improve the development in state of Santa Catarina (Brazil during the years 1961 and 1970

    Directory of Open Access Journals (Sweden)

    Caio Lauth Gualberto

    2013-03-01

    Full Text Available Este texto refere-se a uma pesquisa predominantemente qualitativa, fruto de um estudo exploratório-descritivo acerca das experiências de planejamento econômico realizadas pelo governo estadual em Santa Catarina, elaboradas durante o período compreendido entre 1961 e 1970, durante as gestões de Celso Ramos e Ivo Silveira e que ficaram conhecidas como Plano de Metas do Governo - PLAMEG I e II. Com o propósito de superar pontos de estrangulamentos que limitavam a expansão do setor produtivo, o governo estadual investiu nas áreas de educação, transporte, energia, sistema de crédito e agricultura e os resultados alcançados nesse decênio se refletiram na expansão no número de salas de aulas, ginásios de esporte, qualificação de professores, tempo de estudo de alunos, implantação e reformas de rodovias, expansão da oferta de energia, criação de sistema de crédito estadual, aumento da oferta agrícola, integração de produtores rurais, entre outros. Os dados coletados revelam que ao fim desse período, Santa Catarina pode contar com melhores condições infraestruturais para participar do movimento de crescimento da economia nacional. Em consequência disso, os resultados da pesquisa de maneira geral apontam que os ideais defendidos pela corrente desenvolvimentista, ou seja, aquela que entende que o Estado é o agente responsável pela garantia da criação das condições favoráveis à expansão das atividades produtivas e, consequentemente, pelo avanço em relação aos indicadores de desenvolvimento, ficam fortalecidos.  This paper describe the result of a descriptive and exploratory study that refers to an predominantly qualitative research about the experiences of economic planning carried out by the government of Santa Catarina (Brazil during the period between 1961 and 1970 and which became known as PLAMEG I and PLAMEG II.  In order to overcome the limits to the expansion of the productive sector, the government has

  17. Raymond Aron ante el maquiavelismo político

    Directory of Open Access Journals (Sweden)

    Molina Cano, Jerónimo

    2008-08-01

    Full Text Available It is a simplification of Raymond Aron´s thought to consider him as a mere neo-liberal political thinker. The French sociologist, a well-known political realist, took part in the famous controversy about Machiavellianism that was Aron´s intellectual watershed from the Forties. Starting from that controversy the aim of the present paper is to inquire into his contribution to the so-called “moderate Machiavellianism”, whose Arcanum is that it is not always possible to choose the optimal means to face the right political action. Machiavellianism is not a merely scientific or epistemological question, but something that deeply determines all political actions.

    La presentación de Raymond Aron como un escritor político neoliberal constituye una simplificación de su pensamiento. El sociólogo francés, que pertenece a la tradición del realismo político, tuvo una destacada intervención en la famosa polémica sobre el maquiavelismo que marcó un punto de inflexión en su pensamiento. Este artículo examina su contribución a esa inagotable polémica intelectual desde los años 40 y constata, finalmente, su encuadramiento en el denominado “maquiavelismo moderado”, cuyo arcano político es que, en política, no siempre se pueden elegir los medios de la acción. El maquiavelismo no es, en este sentido, un asunto científico o epistemológico, sino que determina profundamente toda acción política.

  18. Orthoretroviral-like prototype foamy virus gag-pol expression is compatible with viral replication

    Directory of Open Access Journals (Sweden)

    Reh Juliane

    2011-08-01

    Full Text Available Abstract Background Foamy viruses (FVs unlike orthoretroviruses express Pol as a separate precursor protein and not as a Gag-Pol fusion protein. A unique packaging strategy, involving recognition of briding viral RNA by both Pol precursor and Gag as well as potential Gag-Pol protein interactions, ensures Pol particle encapsidation. Results Several Prototype FV (PFV Gag-Pol fusion protein constructs were generated to examine whether PFV replication is compatible with an orthoretroviral-like Pol expression. During their analysis, non-particle-associated secreted Pol precursor protein was discovered in extracellular wild type PFV particle preparations of different origin, copurifying in simple virion enrichment protocols. Different analysis methods suggest that extracellular wild type PFV particles contain predominantly mature p85PR-RT and p40IN Pol subunits. Characterization of various PFV Gag-Pol fusion constructs revealed that PFV Pol expression in an orthoretroviral manner is compatible with PFV replication as long as a proteolytic processing between Gag and Pol proteins is possible. PFV Gag-Pol translation by a HIV-1 like ribosomal frameshift signal resulted in production of replication-competent virions, although cell- and particle-associated Pol levels were reduced in comparison to wild type. In-frame fusion of PFV Gag and Pol ORFs led to increased cellular Pol levels, but particle incorporation was only marginally elevated. Unlike that reported for similar orthoretroviral constructs, a full-length in-frame PFV Gag-Pol fusion construct showed wildtype-like particle release and infectivity characteristics. In contrast, in-frame PFV Gag-Pol fusion with C-terminal Gag ORF truncations or non-removable Gag peptide addition to Pol displayed wildtype particle release, but reduced particle infectivity. PFV Gag-Pol precursor fusion proteins with inactivated protease were highly deficient in regular particle release, although coexpression of p71Gag

  19. Polímeros como modificadores asfálticos

    Directory of Open Access Journals (Sweden)

    Letícia SocaI da Silva

    2009-12-01

    Full Text Available

    Neste trabalho foram preparadas diferentes misturas de ligante asfáltico modificado com polímeros. Foram utilizadas quatro amostras de polímeros, sendo duas de SBS, uma de SEBS e uma de Polietileno Modificado, as quais foram caracterizadas quanto a sua estrutura e propriedades térmicas através de técnicas de Ressonância Magnética Nuclear (RMN, Cromatografia por Permeação a Gel (GPC, Análise Termogravimétrica (TGA e Calorimetria Diferencial de Varredura (DSC. O ligante modificado foi avaliado quanto a sua viscosidade, retorno elástico, comportamento reológico e estabilidade à estocagem. Foram correlacionadas a estrutura química e as transições térmicas dos polímeros com as características do ligante modificado. Os polímeros do tipo SBS foram os melhores modificadores de asfalto, quando comparado com os demais polímeros avaliados.

  20. Ideologia e comportamento político no eleitorado brasileiro

    Directory of Open Access Journals (Sweden)

    Carlos Oliveira

    2015-12-01

    Full Text Available Este artigo aborda o papel das ideologias esquerda edireita sobre o comportamento político do eleitorado brasileiro, com foco na constrição que essas ideologias devem gerar sobre suas preferências políticas. Em outras palavras, avalia se o eleitor estrutura suas atitudes políticas em consonância com a ideologia de que diz ser adepto. Usando dados de survey do Estudo Eleitoral Brasileiro (Eseb, os achados indicam que parte significativa do eleitorado do Brasil nem se autoposiciona ideologicamente. Pior ainda, a ideologia declarada por poucos eleitores não constringe suas preferências políticas. Seguramente, a grande maioria dos eleitores não conhece a complexidade envolta no antagonismo programático de cada lado do espectro ideológico. Conclui-se, portanto, que as ideologias não são importantes para o comportamento político do eleitorado brasileiro.

  1. Por que rir da Filosofia Política?: Abertura

    Directory of Open Access Journals (Sweden)

    Lessa Renato

    1998-01-01

    Full Text Available As diferentes intervenções que compuseram este debate têm como referência comum uma reflexão sobre os lugares da Filosofia Política na tradição disciplinar que designamos como Ciência Política. Recusando a perspectiva que dissocia a Filosofia Política da dimensão empiricamente orientada da disciplina, os argumentos apresentados destacam o papel de fertilização de formas de vida cumprido pela primeira. A agenda dos pesquisadores devotados à boa faina da investigação empírica foi, e segue sendo, em grande medida definida e configurada por exercícios prévios de invenção social e política e por decisões de ordem ontológica, epistemológica e retórica. Neste sentido, a distinção entre ciência e filosofia é, além de obscurantista e marcada por enorme otimismo epistemológico, sintoma de um desconhecimento forte com relação à história do conhecimento político.

  2. Scattering property based contextual PolSAR speckle filter

    Science.gov (United States)

    Mullissa, Adugna G.; Tolpekin, Valentyn; Stein, Alfred

    2017-12-01

    Reliability of the scattering model based polarimetric SAR (PolSAR) speckle filter depends upon the accurate decomposition and classification of the scattering mechanisms. This paper presents an improved scattering property based contextual speckle filter based upon an iterative classification of the scattering mechanisms. It applies a Cloude-Pottier eigenvalue-eigenvector decomposition and a fuzzy H/α classification to determine the scattering mechanisms on a pre-estimate of the coherency matrix. The H/α classification identifies pixels with homogeneous scattering properties. A coarse pixel selection rule groups pixels that are either single bounce, double bounce or volume scatterers. A fine pixel selection rule is applied to pixels within each canonical scattering mechanism. We filter the PolSAR data and depending on the type of image scene (urban or rural) use either the coarse or fine pixel selection rule. Iterative refinement of the Wishart H/α classification reduces the speckle in the PolSAR data. Effectiveness of this new filter is demonstrated by using both simulated and real PolSAR data. It is compared with the refined Lee filter, the scattering model based filter and the non-local means filter. The study concludes that the proposed filter compares favorably with other polarimetric speckle filters in preserving polarimetric information, point scatterers and subtle features in PolSAR data.

  3. Salazarismo y política exterior

    Directory of Open Access Journals (Sweden)

    Juan Carlos JIMÉNEZ REDONDO

    2010-02-01

    Full Text Available RESUMEN: El sistema internacional jugó para la Portugal de Salazar un papel esencial al actuar como fuente privilegiada de la que extraer los recursos materiales (económicos, tecnológicos o financieros e inmateriales (factores de legitimación que garantizaron el programa de reforma política de la dictadura y que permitieron al país desempeñar un papel internacional desproporcionadamente relevante si consideramos su condición de pequeña potencia periférica europea. La novedad del salazarismo respecto a períodos anteriores consistió en la adecuación de esas necesidades de apertura al exterior con una fuerte percepción de los intereses nacionales, dentro de una estrategia pragmática que le permitió acomodarse a la acelerada evolución del sistema internacional y, sobre todo, al cambio que se produjo en el sistema internacional de acuerdo a la dinámica de la Guerra Fría y sus distintas fases. Palabras clave: Salazarismo, OTAN, EFTA, Botelho Moniz, Guerra colonial, descolonización. ABSTRACT: The international system played for the Portugal of Salazar an essential role when acting like privileged source of which to extract the material resources (economic, technological or financial and immaterial (legitimation factors that guaranteed the program of political reform of the dictatorship and that allowed the country to play very out of proportion excellent a role international if we considered its condition of small European peripheral power. The newness of the salazarism with respect to previous periods consisted of the adjustment of those necessities of opening to the outside with a strong perception of the national interests, within a pragmatic strategy that allowed to comply him to the accelerated evolution of the international system and, mainly, to the change that took place in the international system according to the dynamics of the cold war and its different phases. Keywords: Salazarism, NATO, EFTA, Botelho Moniz, Colonial

  4. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

    DEFF Research Database (Denmark)

    Chen, Zhuo Angel; Jawhari, Anass; Fischer, Lutz

    2010-01-01

    Higher-order multi-protein complexes such as RNA polymerase II (Pol II) complexes with transcription initiation factors are often not amenable to X-ray structure determination. Here, we show that protein cross-linking coupled to mass spectrometry (MS) has now sufficiently advanced as a tool...

  5. Política y secularización en la Europa contemporánea

    Directory of Open Access Journals (Sweden)

    Manuel ÁLVAREZ TARDÍO

    2010-02-01

    Full Text Available RESUMEN: Este trabajo se ocupa de la relación entre la política y los procesos de secularización en la Europa contemporánea, estudia sus variantes y opciones ideológicas, así como sus diferentes tradiciones y situaciones nacionales, poniendo de relieve la existencia de dos grandes modelos. El primero —el de Gran Bretaaña, Bélgica y Holanda— se caracterizó por su gradualismo, tras la renuncia por parte del bloque político secular a apropiarse del Estado y su aceptación de la idea de que éste debía limitarse a proteger la libertad inherente al individuo. En cambio, el modelo de laicismo estatista —vigente en Francia, Italia y, en su versión más extrema, en la España de la II República—, partía de la idea de que el Estado era intérprete absoluto de un poder que no puede fragmentarse sin dejar de ser democrático, y se tradujo en el intento de contrarrestar la presencia católica mediante la imposición de políticas laicas, especialmente en el ámbito de la educación. Palabras Clave: Historia Contemporánea de Europa, Religión, Política, Secularización, Laicismo. ABSTRACT: This study deals with the relationship between politics and secularization processes in contemporary Europe, and studies its ideological variants and options as well as its different national traditions and situations, emphasizing the existence of two large models. The first, that of Great Britain, Belgium and Holland, is characterized by its gradualism, after the secular political block renounced appropriation of the State and accepted the idea that the State should be limited to protecting the inherent freedom of the individual. However, the model of state laicism, prevailing in France, Italy and in its most extreme versión in the Spain of the Second Republic, was based on the idea that the State was the absolute interpreter of a power that could not be fragmented without becoming undemocratic, and was expressed in the attempt to counter Catholic

  6. CRISPR Technology Reveals RAD(51)-ical Mechanisms of Repair in Roundworms: An Educational Primer for Use with "Promotion of Homologous Recombination by SWS-1 in Complex with RAD-51 Paralogs in Caenorhabditis elegans".

    Science.gov (United States)

    Turcotte, Carolyn A; Andrews, Nicolas P; Sloat, Solomon A; Checchi, Paula M

    2016-11-01

    The mechanisms cells use to maintain genetic fidelity via DNA repair and the accuracy of these processes have garnered interest from scientists engaged in basic research to clinicians seeking improved treatment for cancer patients. Despite the continued advances, many details of DNA repair are still incompletely understood. In addition, the inherent complexity of DNA repair processes, even at the most fundamental level, makes it a challenging topic. This primer is meant to assist both educators and students in using a recent paper, "Promotion of homologous recombination by SWS-1 in complex with RAD-51 paralogs in Caenorhabditis elegans," to understand mechanisms of DNA repair. The goals of this primer are to highlight and clarify several key techniques utilized, with special emphasis on the clustered, regularly interspaced, short palindromic repeats technique and the ways in which it has revolutionized genetics research, as well as to provide questions for deeper in-class discussion. Copyright © 2016 by the Genetics Society of America.

  7. Evolution of the paralogous hap and iga genes in Haemophilus influenzae: evidence for a conserved hap pseudogene associated with microcolony formation in the recently diverged Haemophilus aegyptius and H. influenzae biogroup aegyptius

    DEFF Research Database (Denmark)

    Kilian, Mogens; Poulsen, Knud; Lomholt, Hans Bredsted

    2002-01-01

    Certain non-capsulate strains belonging to the Haemophilus influenzae/Haemophilus aegyptius complex show unusually high pathogenicity, but the evolutionary origin of these virulent phenotypes, termed H. influenzae biogroup aegyptius, is as yet unknown. The aim of the present study was to elucidate...... the mechanisms of evolution of two paralogous genes, hap and iga, which encode the adhesion and penetration Hap protein and the IgA1 protease respectively. Partial sequencing of hap and iga genes in a comprehensive collection of strains belonging to the H. influenzae/H. aegyptius complex revealed considerable...... genetic polymorphism and pronounced mosaic-like patterns in both genes, but no evidence of intrastrain recombination between the two genes. A conserved hap pseudogene was present in all strains of H. aegyptius and H. influenzae biogroup aegyptius, each of which constituted distinct subpopulations...

  8. Engajamento cívico e escolaridade superior: as eleições de 2014 e o comportamento político dos brasileiros

    Directory of Open Access Journals (Sweden)

    André Luiz Vieira Dias

    2015-12-01

    Full Text Available Resumo O artigo tem como objetivo analisar a influência da escolaridade sobre o comportamento político dos brasileiros. Supõe-se que a escolaridade é capaz de despertar um comportamento mais interessado, participativo e coerente, portanto, engajado, dos cidadãos. Nesse sentido, busca-se verificar (i se os cidadãos brasileiros são informados e interessados por política; (ii motivados em participar das eleições e outras atividades políticas e (iii sua avaliação e satisfação em relação ao processo democrático. Destaca-se o comportamento daqueles que possuem o ensino superior completo, em comparação aos demais níveis de escolaridade, no intuito de identificar padrões comportamentais distintos. A partir dos dados obtidos pelo ESEB 2014, além da análise descritiva dos dados, aplicou-se o modelo de regressão logística, relacionando a variável escolaridade superior a outras variáveis agrupadas em quatro categorias: (a aspectos socioeconômicos; (b informação e interesse por política; (c participação nas eleições, em atividades políticas tradicionais e em outras atividades políticas; (d avaliação e satisfação política. Dessa maneira, verifica-se (i que os brasileiros são pouco ou nada interessados por política; (ii participam das eleições mas não das atividades tradicionais e novas formas de engajamento político; (iii apoiam e estão razoavelmente satisfeitos com a democracia. Em relação aos mais escolarizados, temos o predomínio de mulheres, um público mais jovem e com renda familiar sutilmente superior à dos menos escolarizados. Aqueles que possuem o ensino superior completo tendem a se comportar de forma distinta: são levemente mais informados e interessados por política; apesar dos baixos percentuais encontrados, são os que mais participam das atividades políticas em geral; são os que mais apoiam a democracia, porém os mais insatisfeitos com o seu funcionamento. Esse estudo nos permite

  9. La política educativa republicana y su proyección en el exilio mexicano.

    OpenAIRE

    Boned Colera, Ana

    2006-01-01

    Recorrido por las páginas de la historia de la II República Española, periodo en el que la educación, como base de la democracia, cobró una importancia inusual en la política general, con el compromiso de una parte significativa del pueblo español. Recordatorio del legado, en materia de enseñanza, del exilio republicano en México. A stroll through the history of the Second Spanish Republic, a period in which education, as the foundation of democracy, gained an unusually important role in p...

  10. Fraternidad (un concepto político a debate)

    OpenAIRE

    Agra Romero, María Xosé

    1994-01-01

    Este artículo propone una reflexión sobre la pertinencia del concepto político de fraternidad para el lenguaje político actual. Partiendo de la necesidad de examinar la lógica propia de la fraternidad, su conceptualización o tradición, su cristalización en tomo a la familia, el trabajo y la nación, se trata de establecer como la «metáfora de la familia» en la que, de una forma u otra, siempre se inscribe o reescribe la fraternidad pública o política, condiciona de una manera signifi...

  11. Naturaleza humana y política en Denis Diderot

    Directory of Open Access Journals (Sweden)

    Pablo Scotto Benito

    2015-02-01

    Full Text Available El presente trabajo se propone relacionar la concepción que Diderot tiene del ser humano con sus ideas políticas. A pesar de que no se pueda hallar en la obra del “filósofo” un tratado sistemático en el que el estudio de la naturaleza humana sirva como fundamentación de un determinado sistema político, la epistemología empirista y el monismo materialista diderotianos, con la consecuente revalorización de las pasiones corporales, conducen a una moral y una política universalistas, acordes con la naturaleza humana y centradas en la felicidad de los individuos.

  12. Corrupción política y nepotismo

    OpenAIRE

    Ortiz Ibarra, Yaneth Alejandra

    2009-01-01

    Definida la corrupción política se presentan las diferentes formas que ésta adopta: la corrupción en la función legislativa, el clientelismo, y la financiación corrupta. Se dedica especial atención al nepotismo, acuñando un concepto propio y considerándolo una forma más de corrupción política y una variante del clientelismo explicando los criterios por los cuales se debe considerar el nombramiento de familiares para cargos públicos una práctica de política corrupta, así como las excepciones d...

  13. Asia Central en la política exterior rusa

    Directory of Open Access Journals (Sweden)

    Javier Morales

    2012-01-01

    Full Text Available Las políticas rusas hacia Asia Central han estado condicionadas por la herencia histórica anterior a la disolución de la URSS, pero también por los cambios en el sistema internacional y en la propia Rusia acaecidos desde entonces. ¿En qué medida la actuación de Rusia ha sido coherente y estable, basada en una estrategia para Asia Central fundamentada en los intereses nacionales? En este artículo examinamos los fundamentos de la política exterior rusa en relación con Asia Central, dividiéndola en tres apartados: político, económico y de seguridad.

  14. Elecciones, Jóvenes y Política

    Directory of Open Access Journals (Sweden)

    Anna María Fernández Poncela

    1999-01-01

    Full Text Available Este texto muestra el papel de la juventud en un posible cambio político, especialmente en el espacio elec toral. Se centra, en concreto, en la postura político - elec toral de los jóvenes en nuestros días y de cara al fu turo cercano; por una parte, comparada con otros grupos de edad; por otra, específicamente en tre los universitarios, y finalmente intentando vislumbrar los escenarios del porvenir al respecto. Para ello se emplearán datos de una encuesta nacional, encuestas universitarias y sondeos de opinión en torno a la convocatoria de 1997, sobre todo en los resultados de las preguntas sobre la simpatía política y preferencias electorales, a quiénes se votó y a quiénes se votará.

  15. Política habitacional de Argentina y Chile durante los noventa. Un estudio de política comparada

    Directory of Open Access Journals (Sweden)

    Mercedes Lentini

    2005-01-01

    Full Text Available La óptica del análisis comparado de políticas habitacionales conduce las argumentaciones de este artículo. Se pretende sinteti-zar algunos resultados de una investigación de mayor alcance cuyo objetivo central se planteó a partir de la necesidad de efectuar el análisis de las políticas públicas de vivienda implementadas por dos países de la Región: Chile y Argentina. Se indaga en torno a los efectos producidos sobre las políticas por los procesos hegemónicos que dominaron la escena interna-cional durante el último cuarto del siglo XX. Se analiza, la concreción y alcances del denominado enfoque facilitador que carac-terizó la política habitacional durante los noventa. Posteriormente, se sintetizan diez enseñanzas que resultan del análisis de las políticas en los dos países. Finalmente, a modo de conclusión, se realiza un breve análisis del camino seguido por ambos países al inicio del nuevo siglo. Se identifican cambios en el rol del Estado y nuevas estrategias de intervención.

  16. Maternal MEMI Promotes Female Meiosis II in Response to Fertilization in Caenorhabditis elegans.

    Science.gov (United States)

    Ataeian, Maryam; Tegha-Dunghu, Justus; Curtis, Donna G; Sykes, Ellen M E; Nozohourmehrabad, Ashkan; Bajaj, Megha; Cheung, Karen; Srayko, Martin

    2016-12-01

    In most animals, female meiosis completes only after fertilization. Sperm entry has been implicated in providing a signal for the initiation of the final meiotic processes; however, a maternal component required for this process has not been previously identified. We report the characterization of a novel family of three highly similar paralogs (memi-1, memi-2, memi-3) that encode oocyte-specific proteins. A hyper-morphic mutation memi-1(sb41) results in failure to exit female meiosis II properly; however, loss of all three paralogs results in a "skipped meiosis II" phenotype. Mutations that prevent fertilization, such as fer-1(hc1), also cause a skipped meiosis II phenotype, suggesting that the MEMI proteins represent a maternal component of a postfertilization signal that specifies the meiosis II program. MEMI proteins are degraded before mitosis and sensitive to ZYG-11, a substrate-specific adapter for cullin-based ubiquitin ligase activity, and the memi-1(sb41) mutation results in inappropriate persistence of the MEMI-1 protein into mitosis. Using an RNAi screen for suppressors of memi-1(sb41), we identified a sperm-specific PP1 phosphatase, GSP-3/4, as a putative sperm component of the MEMI pathway. We also found that MEMI and GSP-3/4 proteins can physically interact via co-immunoprecipitation. These results suggest that sperm-specific PP1 and maternal MEMI proteins act in the same pathway after fertilization to facilitate proper meiosis II and the transition into embryonic mitosis. Copyright © 2016 by the Genetics Society of America.

  17. Pensamento liberal e hegemonia norte-americana: a cultura política em Almond e Verba DOI10.5216/o.v14i1.27658

    Directory of Open Access Journals (Sweden)

    José Henrique Singolano Néspoli

    2014-12-01

    Full Text Available Este artigo consiste num estudo da história do pensamento político contemporâneo e dedica-se particularmente à análise do conceito de cultura política desenvolvido por Gabriel Almond e Sidney Verba na obra A cultura cívica, publicada em 1963. A partir dessa referência, o conceito se espalhou por diversas áreas do conhecimento e a cultura política se transformou num dos mais importantes conceitos do período pós II Guerra Mundial. Esse estudo tem por objetivo analisar as concepções teóricas e práticas presentes no conceito de cultura política em seu contexto de origem, de modo que, por um lado, procura-se identificar as principais referências intelectuais e debates teóricos que contribuíram para delimitar o conceito, por outro lado, pretende analisar os desdobramentos práticos do conceito, buscando compreender as orientações do conceito para a política do pós-guerra. Em ambos os aspectos, o conceito de cultura política de Almond e Verba representou um instrumento da hegemonia norte-americana no contexto da Guerra Fria. hegemonia Estados Unidos.

  18. Lengua e identidad nacional en el pensamiento político de Alonso de Cartagena

    Directory of Open Access Journals (Sweden)

    Luis Fernández Gallardo

    2012-06-01

    Full Text Available Alonso de Cartagena (1385-1456, uno de los intelectuales más notables en la Castilla del siglo xv, muestra en su obra literaria un profundo interés por las cuestiones lingüísticas. Su concepción del lenguaje basada en la Política de Aristóteles, integra ética y política. La lengua es el vínculo de la comunidad, por ser la sustancia de la ley, y, por tanto, es el fundamento del poder político. Al justificar la iniciativa del rey Juan II para traducir a Séneca, Cartagena considera la lengua como patrimonio real. Ofrece un interesante testimonio de la conciencia de la diversidad idiomática hispana. Distingue en el reino de Castilla tres lenguas que corresponden a tres pueblos: castellano, gallego y vasco. Ofrece un temprano testimonio de la denominación del castellano como lengua española o español.Alfonso de Cartagena, l'un des plus remarquables intellectuels castillans du XVe siècle, montre dans son œuvre un vif intérêt pour le langage. Sa conception du langage, fondée sur la Politique d'Aristote, intègre l'éthique et la politique. La langue est le lien de la communauté et la substance de la loi ; elle est donc le fondement du pouvoir politique. Pour justifier l'initiative du roi Juan II de traduire Sénèque, Cartagena considère la langue comme patrimoine royal. Il offre aussi un intéressant témoignage de la conscience de la diversité linguistique hispanique. Il distingue dans le royaume de Castille trois langues qui correspondent à trois peuples : le castillan, le galicien et le basque. Il offre un témoignage précoce de la dénomination de la langue castillane comme “langue espagnole”.

  19. Cervantes y la Corte: Lecturas biográficas, patrocinio e interpretaciones políticas

    Directory of Open Access Journals (Sweden)

    Mario CRESPO LÓPEZ

    2009-12-01

    Full Text Available RESUMEN: La vida y la obra de Miguel de Cervantes contienen datos de indudable interés para el estudio de la política de la Edad Moderna y de las conexiones áulicas entre el creador literato y los grupos de poder de su época. Lo que conocemos de la biografía de Cervantes, sus inquietudes vitales, los argumentos de sus obras y los misterios que rodearon su mecenazgo y participación en la «república de las letras» se relacionan no sólo con el contexto político de desencanto tras la grandeza imperial de Felipe II sino también con la relación con personajes concretos de la Corte de Felipe III y con algunos acontecimientos, como la expulsión de los moriscos, que marcaron tanto el reinado como la propia obra cervantina. Lo cierto es que no existen demasiadas fuentes a partir de las cuales puedan estudiarse estas conexiones, pero es indudable que el creador está unido a una época en la que debe sobrevivir y a la que debe gran parte de sus preocupaciones literarias. En este trabajo se esbozan algunas conexiones políticas de Cervantes, recuperando parte de la bibliografía de los llamados «cervantistas» decimonónicos.ABSTRACT: Miguel de Cervantes' life and work contain interesting data to study the Modern Age politics and courts connections between the writer and the power ful groups at that time. Cervantes biography, his vital inquietudes, the plot in his works, the misteries of his literary sustenance and his participation in the «república de las letras» can be relationed not only with the political context of disenchantment after Philip II imperial grandeeship but also with the relation with concrete persons in the Court of Philip III and with some events, like Morisco's expulsion, that determine the reign and own Cervantes' work. There are not enough data to study those connections, but it is indubitable that the writer lives in a time where he must survive and where he shows his literary worries. This work sketches some

  20. Historia del pensamiento político moderno (09 Marxismo)

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    1.- Manifiesto del Partido Comunista. Un fantasma recorre Europa: el fantasma del comunismo. 2.- El socialismo científico. 3.- Materialismo histórico. La teoría de la revolución en Marx. La dialéctica hegeliana. Determinismo. &&&&& Historia del Pensamiento Político Moderno tiene como objetivo ofrecer una visión de aspectos centrales del pensamiento político moderno, del siglo XVI al XX. Los textos de los autores escogidos constituyen el punto de apoyo fundamental en el desarrollo del ...

  1. La política como espectáculo

    Directory of Open Access Journals (Sweden)

    Juan E. Fernández

    2015-01-01

    Full Text Available La política siempre estuvo ligada al espectáculo, la pompa y el teatro. La antigua oratoria imperial, eclesiástica y solemne; los debates cargados de ironías en asambleas y parlamentos; y los actuales espectáculos políticos televisados difieren más en la forma y el alcance (curiosamente más democrático que en su ausencia comunicacional. El autor piensa, que hay mucho de siniestro y peligroso en la trivialización del camino al poder cuando lo que está en juego parece ser la vida misma.

  2. La agricultura peruana: problemas, potencialidades y políticas

    OpenAIRE

    Adolfo Figueroa

    1986-01-01

    El presente trabajo tiene por objeto presentar, primero, los problemas estructurales de la agricultura peruana, luego sus potencialidades y, finalmente, los elementos para el diseño de políticas económicas. Debo admitir que este objetivo es muy ambicioso para ser desarrollado en un artículo y por un investigador individual. Por ello espero que el artículo logre, más bien, ordenar los elementos básicos para la discusión de la política económica dirigida al desarrollo agrícola del Perú....

  3. Encuestas políticas: Paradojas y aproximaciones.

    OpenAIRE

    Emili Utreras

    2008-01-01

    Las encuestas no son una bola de cristal para hacer predicciones del futuro, son un instrumento para conocer la realidad y poder actuar a futuro. En política se las usa para las campañas. Últimamente en el Ecuador la encuesta se ha convertido en una herramienta para la investigación de la opinión pública, ha sido utilizada en las campañas electorales para tener información sobre las opiniones y percepciones de los ciudadanos sobre la vida cotidiana o la coyuntura política. Las encuestas solo ...

  4. Historia del pensamiento político moderno (11 Comunismo)

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    1. Revolución rusa y leninismo. 2. El leninismo. Vladimir Ilich Ulianov, Lenin, 1870-1924. 3. La doctrina leninista del Estado.- 4. La revolución en un solo país y el campo socialista.- 5. El estalinismo.- Estalinismo en el Mundo. Eurocomunismo. 7. El socialismo en Occidente. 8. Los marxismos del siglo XX.- El neomarxismo Historia del Pensamiento Político Moderno tiene como objetivo ofrecer una visión de aspectos centrales del pensamiento político moderno, del siglo XVI al XX...

  5. La violencia política de la izquierda Europea

    OpenAIRE

    Domínguez Sánchez-Pinilla, Mario

    2001-01-01

    1968 marca, en diversos países europeos, el fin de la hegemonía del marxismo ortodoxo; la izquierda occidental comienza a alejarse como reacción a su inmovilismo. En respuesta, surgen grupos cuya urgencia por la acción -además de la heterogeneidad social y política de los escenarios nacionales- da paso a la violencia política. Con especial énfasis en Italia y Alemania se analiza el surgimiento, la estructura, acciones e ideología de las organizaciones del terrorismo izquierdista europeo....

  6. Republicanos y política municipal en Valladolid

    OpenAIRE

    Cano García, Juan Antonio

    2000-01-01

    El presente artículo estudia las estrategias del partido republicano en Valladolid desde 1880 en que volvieron a la legalidad. Este partido introdujo un nuevo modelo de actuación política basado en una movilización política masiva, sobre todo entre las clases trabajadoras. Los concejales republicanos intentaron terminar con las practicas de corrupción que los partidos oficiales utilizaban para beneficiar a sus miembros. This paper studies the politic strategies of republican party in Valla...

  7. Responsabilidad social corporativa y conexiones políticas

    OpenAIRE

    Ceballos Gallego, Nicolás Bernardo

    2017-01-01

    La inclusión de políticas de Responsabilidad Social en la actividad productiva es una estrategia que en la actualidad se ve asociada al buen desempeño empresarial. Paralelo a esto, se lleva a cabo un ejercicio de respaldo a causas políticas que define el comportamiento de las compañías en términos de gobierno corporativo. Se encuentra una relación positiva y significativa entre ambos conceptos sugiriendo una relación complementaria entre ambos y asociada a causas filantrópicas más allá de lo...

  8. Proviral HIV-genome-wide and pol-gene specific Zinc Finger Nucleases: Usability for targeted HIV gene therapy

    Directory of Open Access Journals (Sweden)

    Wayengera Misaki

    2011-07-01

    Full Text Available Abstract Background Infection with HIV, which culminates in the establishment of a latent proviral reservoir, presents formidable challenges for ultimate cure. Building on the hypothesis that ex-vivo or even in-vivo abolition or disruption of HIV-gene/genome-action by target mutagenesis or excision can irreversibly abrogate HIV's innate fitness to replicate and survive, we previously identified the isoschizomeric bacteria restriction enzymes (REases AcsI and ApoI as potent cleavers of the HIV-pol gene (11 and 9 times in HIV-1 and 2, respectively. However, both enzymes, along with others found to cleave across the entire HIV-1 genome, slice (SX at palindromic sequences that are prevalent within the human genome and thereby pose the risk of host genome toxicity. A long-term goal in the field of R-M enzymatic therapeutics has thus been to generate synthetic restriction endonucleases with longer recognition sites limited in specificity to HIV. We aimed (i to assemble and construct zinc finger arrays and nucleases (ZFN with either proviral-HIV-pol gene or proviral-HIV-1 whole-genome specificity respectively, and (ii to advance a model for pre-clinically testing lentiviral vectors (LV that deliver and transduce either ZFN genotype. Methods and Results First, we computationally generated the consensus sequences of (a 114 dsDNA-binding zinc finger (Zif arrays (ZFAs or ZifHIV-pol and (b two zinc-finger nucleases (ZFNs which, unlike the AcsI and ApoI homeodomains, possess specificity to >18 base-pair sequences uniquely present within the HIV-pol gene (ZifHIV-polFN. Another 15 ZFNs targeting >18 bp sequences within the complete HIV-1 proviral genome were constructed (ZifHIV-1FN. Second, a model for constructing lentiviral vectors (LVs that deliver and transduce a diploid copy of either ZifHIV-polFN or ZifHIV-1FN chimeric genes (termed LV- 2xZifHIV-polFN and LV- 2xZifHIV-1FN, respectively is proposed. Third, two preclinical models for controlled testing of

  9. RNA-Free and Ribonucleoprotein-Associated Influenza Virus Polymerases Directly Bind the Serine-5-Phosphorylated Carboxyl-Terminal Domain of Host RNA Polymerase II

    Science.gov (United States)

    Martínez-Alonso, Mónica; Hengrung, Narin

    2016-01-01

    ABSTRACT Influenza viruses subvert the transcriptional machinery of their hosts to synthesize their own viral mRNA. Ongoing transcription by cellular RNA polymerase II (Pol II) is required for viral mRNA synthesis. By a process known as cap snatching, the virus steals short 5′ capped RNA fragments from host capped RNAs and uses them to prime viral transcription. An interaction between the influenza A virus RNA polymerase and the C-terminal domain (CTD) of the large subunit of Pol II has been established, but the molecular details of this interaction remain unknown. We show here that the influenza virus ribonucleoprotein (vRNP) complex binds to the CTD of transcriptionally engaged Pol II. Furthermore, we provide evidence that the viral polymerase binds directly to the serine-5-phosphorylated form of the Pol II CTD, both in the presence and in the absence of viral RNA, and show that this interaction is conserved in evolutionarily distant influenza viruses. We propose a model in which direct binding of the viral RNA polymerase in the context of vRNPs to Pol II early in infection facilitates cap snatching, while we suggest that binding of free viral polymerase to Pol II late in infection may trigger Pol II degradation. IMPORTANCE Influenza viruses cause yearly epidemics and occasional pandemics that pose a threat to human health, as well as represent a large economic burden to health care systems globally. Existing vaccines are not always effective, as they may not exactly match the circulating viruses. Furthermore, there are a limited number of antivirals available, and development of resistance to these is a concern. New measures to combat influenza are needed, but before they can be developed, it is necessary to better understand the molecular interactions between influenza viruses and their host cells. By providing further insights into the molecular details of how influenza viruses hijack the host transcriptional machinery, we aim to uncover novel targets for

  10. La justicia como problema político. Del constructivismo moral kantiano al constructivismo político rawlsiano

    Directory of Open Access Journals (Sweden)

    Jefferson Jaramillo Marín

    2009-01-01

    Full Text Available El artículo expone la justicia como un problema político desde la perspectiva del filósofo John Rawls. En su desarrollo se señalan las implicaciones del constructivismo kantiano en el constructivismo político rawlsiano. Se discute cómo la conexión entre estos dos tipos de constructivismo, proporciona un procedimiento de construcción, en el que agentes racionalmente autónomos, sujetos a condiciones razonables, elaboran acuerdos sobre principios públicos de justicia para lograr un sistema justo de cooperación que trascienda generacionalmente. Se concluye, mostrando las limitaciones y alcances de esta propuesta en el pensamiento filosófico y político contemporáneo.

  11. Rtp1p is a karyopherin-like protein required for RNA polymerase II biogenesis.

    Science.gov (United States)

    Gómez-Navarro, Natalia; Peiró-Chova, Lorena; Rodriguez-Navarro, Susana; Polaina, Julio; Estruch, Francisco

    2013-05-01

    The assembly and nuclear transport of RNA polymerase II (RNA pol II) are processes that require the participation of many auxiliary factors. In a yeast genetic screen, we identified a previously uncharacterized gene, YMR185w (renamed RTP1), which encodes a protein required for the nuclear import of RNA pol II. Using protein affinity purification coupled to mass spectrometry, we identified interactions between Rtp1p and members of the R2TP complex. Rtp1p also interacts, to a different extent, with several RNA pol II subunits. The pattern of interactions is compatible with a role for Rtp1p as an assembly factor that participates in the formation of the Rpb2/Rpb3 subassembly complex and its binding to the Rpb1p-containing subcomplex. Besides, Rtp1p has a molecular architecture characteristic of karyopherins, composed of HEAT repeats, and is able to interact with phenylalanine-glycine-containing nucleoporins. Our results define Rtp1p as a new component of the RNA pol II biogenesis machinery that plays roles in subunit assembly and likely in transport through the nuclear pore complex.

  12. Ups and Downs of Poised RNA Polymerase II in B-Cells.

    Directory of Open Access Journals (Sweden)

    Phuong Dao

    2016-04-01

    Full Text Available Recent genome-wide analyses have uncovered a high accumulation of RNA polymerase II (Pol II at the 5' end of genes. This elevated Pol II presence at promoters, referred to here as Poll II poising, is mainly (but not exclusively attributed to temporal pausing of transcription during early elongation which, in turn, has been proposed to be a regulatory step for processes that need to be activated "on demand". Yet, the full genome-wide regulatory role of Pol II poising is yet to be delineated. To elucidate the role of Pol II poising in B cell activation, we compared Pol II profiles in resting and activated B cells. We found that while Pol II poised genes generally overlap functionally among different B cell states and correspond to the functional groups previously identified for other cell types, non-poised genes are B cell state specific. Focusing on the changes in transcription activity upon B cell activation, we found that the majority of such changes were from poised to non-poised state. The genes showing this type of transition were functionally enriched in translation, RNA processing and mRNA metabolic process. Interestingly, we also observed a transition from non-poised to poised state. Within this set of genes we identified several Immediate Early Genes (IEG, which were highly expressed in resting B cell and shifted from non-poised to poised state after B cell activation. Thus Pol II poising does not only mark genes for rapid expression in the future, but it is also associated with genes that are silenced after a burst of their expression. Finally, we performed comparative analysis of the presence of G4 motifs in the context of poised versus non-poised but active genes. Interestingly we observed a differential enrichment of these motifs upstream versus downstream of TSS depending on poising status. The enrichment of G4 sequence motifs upstream of TSS of non-poised active genes suggests a potential role of quadruplexes in expression

  13. As assimetrias entre as políticas setoriais e a política de planejamento regional no Brasil

    Directory of Open Access Journals (Sweden)

    João Mendes da Rocha Neto

    2011-12-01

    Full Text Available O modo de conduzir a formulação das políticas de desenvolvimento regional tem se constituído em ampla arena de embates acadêmicos e técnicos e levado a reflexões sobre os rumos das múltiplas políticas que acompanham esse processo de planejamento regional. Isso, em parte, decorre do processo de globalização e das políticas neoliberais que o acompanham, as quais possuem um forte apelo à competitividade. Essa estratégia de buscar espaços "privilegiados" se fez presente de uma forma intensa em alguns setores produtivos, que, ao usar o espaço como mercadoria, utilizam seu conjunto de atributos (naturais e artificiais para realizarem-se e reproduzirem-se como parte do sistema. Assim, a proposta de estudo pretende responder a questão: em que medida as políticas públicas setoriais têm dialogado com as políticas de planejamento e desenvolvimento regional no âmbito do governo federal? No caso das políticas de planejamento regional, o recorte espacial é visto como um instrumento que, ao ser aplicado, pode se mostrar capaz de viabilizar a integração de ações multissetorializadas, o que em certa dimensão apontaria para uma maior eficiência do Estado na busca por restabelecer o equilíbrio esgarçado, tornando mais eficiente o planejamento.

  14. File list: Pol.CDV.50.AllAg.Atrioventicular_canals [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.50.AllAg.Atrioventicular_canals mm9 RNA polymerase Cardiovascular Atrioventicular canals... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.50.AllAg.Atrioventicular_canals.bed ...

  15. File list: Pol.CDV.20.AllAg.Atrioventicular_canals [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.20.AllAg.Atrioventicular_canals mm9 RNA polymerase Cardiovascular Atrioventicular canals... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.20.AllAg.Atrioventicular_canals.bed ...

  16. File list: Pol.CDV.10.AllAg.Atrioventicular_canals [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.10.AllAg.Atrioventicular_canals mm9 RNA polymerase Cardiovascular Atrioventicular canals... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.10.AllAg.Atrioventicular_canals.bed ...

  17. File list: Pol.CDV.05.AllAg.Atrioventicular_canals [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.05.AllAg.Atrioventicular_canals mm9 RNA polymerase Cardiovascular Atrioventicular canals... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.05.AllAg.Atrioventicular_canals.bed ...

  18. File list: Pol.Unc.50.AllAg.Unclassified [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.50.AllAg.Unclassified mm9 RNA polymerase Unclassified Unclassified SRX25462...9 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Unc.50.AllAg.Unclassified.bed ...

  19. File list: Pol.Unc.05.AllAg.Unclassified [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.05.AllAg.Unclassified dm3 RNA polymerase Unclassified Unclassified SRX11077...4 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Unc.05.AllAg.Unclassified.bed ...

  20. File list: Pol.Unc.05.AllAg.Unclassified [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.05.AllAg.Unclassified mm9 RNA polymerase Unclassified Unclassified SRX25462...9 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Unc.05.AllAg.Unclassified.bed ...

  1. File list: Pol.Unc.10.AllAg.Unclassified [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.10.AllAg.Unclassified sacCer3 RNA polymerase Unclassified Unclassified http...://dbarchive.biosciencedbc.jp/kyushu-u/sacCer3/assembled/Pol.Unc.10.AllAg.Unclassified.bed ...

  2. File list: Pol.Unc.10.AllAg.Unclassified [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Unc.10.AllAg.Unclassified dm3 RNA polymerase Unclassified Unclassified SRX11077...4 http://dbarchive.biosciencedbc.jp/kyushu-u/dm3/assembled/Pol.Unc.10.AllAg.Unclassified.bed ...

  3. File list: Pol.Prs.10.AllAg.Prostatic_Neoplasms [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.10.AllAg.Prostatic_Neoplasms mm9 RNA polymerase Prostate Prostatic Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Prs.10.AllAg.Prostatic_Neoplasms.bed ...

  4. File list: Pol.Prs.50.AllAg.Prostatic_Neoplasms [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.50.AllAg.Prostatic_Neoplasms mm9 RNA polymerase Prostate Prostatic Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Prs.50.AllAg.Prostatic_Neoplasms.bed ...

  5. File list: Pol.Prs.20.AllAg.Prostatic_Neoplasms [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.20.AllAg.Prostatic_Neoplasms mm9 RNA polymerase Prostate Prostatic Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Prs.20.AllAg.Prostatic_Neoplasms.bed ...

  6. File list: Pol.Prs.05.AllAg.Prostatic_Neoplasms [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.05.AllAg.Prostatic_Neoplasms mm9 RNA polymerase Prostate Prostatic Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Prs.05.AllAg.Prostatic_Neoplasms.bed ...

  7. File list: Pol.Bld.20.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.20.AllAg.Leukemia,_Myeloid mm9 RNA polymerase Blood Leukemia, Myeloid http:...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.20.AllAg.Leukemia,_Myeloid.bed ...

  8. File list: Pol.Bld.50.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.50.AllAg.Leukemia,_Myeloid hg19 RNA polymerase Blood Leukemia, Myeloid http...://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.50.AllAg.Leukemia,_Myeloid.bed ...

  9. File list: Pol.Bld.10.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.10.AllAg.Leukemia,_Myeloid mm9 RNA polymerase Blood Leukemia, Myeloid http:...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.10.AllAg.Leukemia,_Myeloid.bed ...

  10. File list: Pol.Bld.10.AllAg.Leukemia,_Lymphoid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.10.AllAg.Leukemia,_Lymphoid mm9 RNA polymerase Blood Leukemia, Lymphoid htt...p://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.10.AllAg.Leukemia,_Lymphoid.bed ...

  11. File list: Pol.Bld.10.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.10.AllAg.Leukemia,_Myeloid hg19 RNA polymerase Blood Leukemia, Myeloid http...://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.10.AllAg.Leukemia,_Myeloid.bed ...

  12. File list: Pol.Bld.05.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.05.AllAg.Leukemia,_Myeloid mm9 RNA polymerase Blood Leukemia, Myeloid http:...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.05.AllAg.Leukemia,_Myeloid.bed ...

  13. File list: Pol.Bld.50.AllAg.Leukemia,_Lymphoid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.50.AllAg.Leukemia,_Lymphoid mm9 RNA polymerase Blood Leukemia, Lymphoid htt...p://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.50.AllAg.Leukemia,_Lymphoid.bed ...

  14. File list: Pol.Bld.05.AllAg.Leukemia,_Lymphoid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.05.AllAg.Leukemia,_Lymphoid mm9 RNA polymerase Blood Leukemia, Lymphoid htt...p://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.05.AllAg.Leukemia,_Lymphoid.bed ...

  15. File list: Pol.Bld.20.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.20.AllAg.Leukemia,_Myeloid hg19 RNA polymerase Blood Leukemia, Myeloid http...://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.20.AllAg.Leukemia,_Myeloid.bed ...

  16. File list: Pol.Bld.20.AllAg.Leukemia,_Lymphoid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.20.AllAg.Leukemia,_Lymphoid mm9 RNA polymerase Blood Leukemia, Lymphoid htt...p://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.20.AllAg.Leukemia,_Lymphoid.bed ...

  17. File list: Pol.Bld.05.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.05.AllAg.Leukemia,_Myeloid hg19 RNA polymerase Blood Leukemia, Myeloid http...://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.05.AllAg.Leukemia,_Myeloid.bed ...

  18. File list: Pol.Bld.50.AllAg.Leukemia,_Myeloid [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.50.AllAg.Leukemia,_Myeloid mm9 RNA polymerase Blood Leukemia, Myeloid http:...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Bld.50.AllAg.Leukemia,_Myeloid.bed ...

  19. File list: Pol.CDV.50.AllAg.Cardiomyocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.50.AllAg.Cardiomyocytes mm9 RNA polymerase Cardiovascular Cardiomyocytes ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.50.AllAg.Cardiomyocytes.bed ...

  20. File list: Pol.CDV.10.AllAg.Cardiomyocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.10.AllAg.Cardiomyocytes mm9 RNA polymerase Cardiovascular Cardiomyocytes ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.10.AllAg.Cardiomyocytes.bed ...

  1. File list: Pol.CDV.20.AllAg.Cardiomyocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.20.AllAg.Cardiomyocytes mm9 RNA polymerase Cardiovascular Cardiomyocytes ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.20.AllAg.Cardiomyocytes.bed ...

  2. File list: Pol.CDV.05.AllAg.Cardiomyocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.CDV.05.AllAg.Cardiomyocytes mm9 RNA polymerase Cardiovascular Cardiomyocytes ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.CDV.05.AllAg.Cardiomyocytes.bed ...

  3. File list: Pol.Bld.20.AllAg.Polymorphonuclear_leukocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.20.AllAg.Polymorphonuclear_leukocytes hg19 RNA polymerase Blood Polymorphonuclear... leukocytes http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.20.AllAg.Polymorphonuclear_leukocytes.bed ...

  4. File list: Pol.Bld.50.AllAg.Polymorphonuclear_leukocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.50.AllAg.Polymorphonuclear_leukocytes hg19 RNA polymerase Blood Polymorphonuclear... leukocytes http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.50.AllAg.Polymorphonuclear_leukocytes.bed ...

  5. File list: Pol.Bld.05.AllAg.Polymorphonuclear_leukocytes [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Bld.05.AllAg.Polymorphonuclear_leukocytes hg19 RNA polymerase Blood Polymorphonuclear... leukocytes http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Bld.05.AllAg.Polymorphonuclear_leukocytes.bed ...

  6. "Çercada de muchos contrarios". Didáctica de las relaciones políticas ciudad-noblema en la Cuenca del siglo XV

    OpenAIRE

    Jara Fuente, José Antonio

    2013-01-01

    Es bien sabido el carácter generalmente conflictivo de las relaciones políticas nobleza-ciudad en la Castilla del siglo XV. La minoría de Juan II y los continuos episodios de guerra civil que se sucedieron durante los reinados de Juan II y Enrique IV, hasta el triunfo del partido isabelino en 1480, facilitaron una violencia noble encaminada, especialmente, a la apropiación de la justicia y las rentas reales, y a la ocupación de términos urbanos. Sin negar dicha realidad, en este trabajo se an...

  7. La justicia como problema político. Del constructivismo moral kantiano al constructivismo político rawlsiano

    OpenAIRE

    Jefferson Jaramillo Marín; Yesid Echeverry Enciso

    2009-01-01

    El artículo expone la justicia como un problema político desde la perspectiva del filósofo John Rawls. En su desarrollo se señalan las implicaciones del constructivismo kantiano en el constructivismo político rawlsiano. Se discute cómo la conexión entre estos dos tipos de constructivismo, proporciona un procedimiento de construcción, en el que agentes racionalmente autónomos, sujetos a condiciones razonables, elaboran acuerdos sobre principios públicos de justicia para lograr un sistema justo...

  8. La escisión entre Ciencia Política y realidad política: el caso de la Seguridad Democrática

    Directory of Open Access Journals (Sweden)

    Carlos Andrés Ramírez González

    2014-12-01

    Full Text Available La política de seguridad democrática, adoptada por el Presidente Álvaro Uribe Vélez durante su periodo de gobierno, resultó en un viraje fundamental en los rumbos del país luego del fallido proceso de paz del gobierno Pastrana. En este sentido, el presente trabajo busca demostrar que la Ciencia Política abordó el fenómeno político en contravía con el curso de los hechos, de tal manera que mientras la política de Seguridad Democrática propugnaba por un aumento en la ofensiva militar, la visión desde la Ciencia Política se concentraba en la manera de llegar a unos diálogos de paz o una salida concertada al conflicto. Esto, por tanto, se puede traducir en un rechazo al punto de vista preponderante y a una postura alternativa en el estudio de la realidad política nacional. Para demostrar lo anterior, se realiza una revisión documental aplicada a artículos académicos en cuatro revistas de Ciencia Política del país: Análisis Político, Colombia Internacional, Papel Político y Estudios Políticos durante el periodo de publicación de 2002 a 2012.

  9. A política do ensaio político de catálogo

    Directory of Open Access Journals (Sweden)

    Julian Stallabrass

    2010-01-01

    Full Text Available Este texto foi originalmente publicado no livro Villa Lituania, que aborda o trabalho homônimo, apresentado pela dupla de artistas lituanos Nomeda & Gediminas Urbonas na 52ª Bienal de Veneza, em 2007. O título designa o edifício que até 1940 sediou, em Roma, a primeira embaixada da república independente da Lituania, mantido sob jurisdição das autoridades russas mesmo após a queda do bloco soviético, em 1989, e considerado, pela ex-república soviética, território nacional ocupado. O trabalho implicou na construção de um pombal na Villa Lituania e numa série de ações de conotação política e social em Veneza, Roma e Vilna, cidade onde a dupla reside. Os artistas são conhecidos internacionalmente pela dimensão política e social que pretendem infundir a suas ações. Não obstante a forte carga ideológica que envolveu a intervenção de Nomeda & Gediminas Urbonas na Bienal de Veneza, neste ensaio o autor, tributário da tradição marxista, demonstra notável ceticismo em relação à potência crítica do discurso marxista evocado em parte significativa da arte contemporânea.This text has been originally published in the book Villa Lituania, which approaches the homonymous work presented by the lithuanian artists Nomeda & Gediminas Urbonas, at the 52ª Venice Biennial, in 2007. The title is the name of the building used until 1940 as the seat for the first independent Lithuania Republic's embassy, in Rome, nevertheless kept under the jurisdiction of Russian authorities since the fall of the soviet bloc, in 1989, and considered, by the ex-soviet Republic, national territory under foreign occupation. The work involved the creation of a pigeon loft at Villa Lituania building, as well as a series of actions targeted at social and politic issues in Venice, Rome and Vilnius, where the tandem lives. Socially and politically addressed actions have made the artists internationally known. Notwithstanding the strong ideological drive

  10. Historia del pensamiento político moderno (04 Hobbes)

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    Tema 4. El triunfo del absolutismo en el siglo XVII 1. El triunfo del absolutismo en el siglo XVII. El absolutismo monárquico. Las revoluciones del siglo XVII en Inglaterra. 2. Thomas Hobbes. 1588 – 1679. Leviatán. 3. El pensamiento político durante el siglo XVII. “El estado soy yo”. Luís XIV.

  11. Políticas en la organización

    Directory of Open Access Journals (Sweden)

    Alvaro Rubio Salas

    1989-04-01

    Full Text Available RESUMEN Toda organización por así decirlo obtiene una serie de políticas que la destacan y la diferencian de las demás, sin embargo se pueden definir en  planes de acción que reflejan e identifican la personalidad y estilo de vida de esta.

  12. On the Interfragment Exchange in the X-Pol Method.

    Science.gov (United States)

    Cembran, Alessandro; Bao, Peng; Wang, Yingjie; Song, Lingchun; Truhlar, Donald G; Gao, Jiali

    2010-01-01

    The inclusion of exchange repulsion terms in the explicit polarization (X-Pol) model is examined by antisymmetrizing the X-Pol Hartree-product wave function; this yields XPol with full eXchange, called X-Pol-X. When the monomers are treated by Hartree-Fock theory, this calculation can be accomplished by using the formalism of block-localized wave functions (BLW) that has been used in a variety of applications. In this case the block-localized structure in the X-Pol-X wave function allows for decomposition of the full Fock matrix of a dimension of M blocks into M smaller Fock matrices. The method is illustrated by considering two trimer structures of water clusters, and it is found that the total exchange repulsion energies in these hydrogen-bonding test cases are adequately treated and-to a good approximation- are pairwise additive. We also present a formalism to yield a simplified Fock matrix by making use of the neglect of interfragment differential overlap (NIDO) approximation, which is less severe than the neglect of diatomic differential overlap (NDDO) approximation.

  13. Consultores políticos: ¿Fabricantes de dioses?

    Directory of Open Access Journals (Sweden)

    Luis Eladio Proaño

    2015-01-01

    Full Text Available Considera el autor que los consultores políticos son fabricantes de dioses capaces de defender a un personaje como presidente pese a su connatural antipatía y falta de credibilidad. Señala lo que importa de una campaña, la originalidad, el slogan y el espectáculo.

  14. Encuesta sobre los partidos políticos

    OpenAIRE

    2015-01-01

    En esta encuesta un grupo de Catedráticos de Derecho constitucional contestan a preguntas relativas al régimen constitucional y legal de los partidos políticos en un Estado democrático: en concreto sobre sus fines y funciones en el Estado democrático

  15. Eesti polütsentriline kunstiharidusruum / Raivo Kelomees

    Index Scriptorium Estoniae

    Kelomees, Raivo, 1960-

    2002-01-01

    Põhineb Eesti Kunstiakadeemia kolledzhi Academia Grata avamise konverentsil 20. I peetud ettekandel. Mis on valesti Eesti kunstihariduses, kunstiõppe spetsiifikast, tasakaalust ja sotsiaalsest kokkuleppest, polütsentrilisest kunstiühiskonnast. Rektor Reiu Tüür sellest, mis muutub Academia Non Grata elus pärast EKA-ga liitumist ja nimevahetust.

  16. HIV-1 clade B pol evolution following primary infection.

    Directory of Open Access Journals (Sweden)

    George K Hightower

    Full Text Available Characterize intra-individual HIV-1 subtype B pol evolution in antiretroviral naive individuals.Longitudinal cohort study of individuals enrolled during primary infection.Eligible individuals were antiretroviral naïve participants enrolled in the cohort from December 1997-December 2005 and having at least two blood samples available with the first one collected within a year of their estimated date of infection. Population-based pol sequences were generated from collected blood samples and analyzed for genetic divergence over time in respect to dual infection status, HLA, CD4 count and viral load.93 participants were observed for a median of 1.8 years (Mean = 2.2 years, SD =1.9 years. All participants classified as mono-infected had less than 0.7% divergence between any two of their pol sequences using the Tamura-Nei model (TN93, while individuals with dual infection had up to 7.0% divergence. The global substitution rates (substitutions/nucleotide/year for mono and dually infected individuals were significantly different (p<0.001; however, substitution rates were not associated with HLA haplotype, CD4 or viral load.Even after a maximum of almost 9 years of follow-up, all mono-infected participants had less than 1% divergence between baseline and longitudinal sequences, while participants with dual infection had 10 times greater divergence. These data support the use of HIV-1 pol sequence data to evaluate transmission events, networks and HIV-1 dual infection.

  17. Fast Superpixel Segmentation Algorithm for PolSAR Images

    Directory of Open Access Journals (Sweden)

    Zhang Yue

    2017-10-01

    Full Text Available As a pre-processing technique, superpixel segmentation algorithms should be of high computational efficiency, accurate boundary adherence and regular shape in homogeneous regions. A fast superpixel segmentation algorithm based on Iterative Edge Refinement (IER has shown to be applicable on optical images. However, it is difficult to obtain the ideal results when IER is applied directly to PolSAR images due to the speckle noise and small or slim regions in PolSAR images. To address these problems, in this study, the unstable pixel set is initialized as all the pixels in the PolSAR image instead of the initial grid edge pixels. In the local relabeling of the unstable pixels, the fast revised Wishart distance is utilized instead of the Euclidean distance in CIELAB color space. Then, a post-processing procedure based on dissimilarity measure is empolyed to remove isolated small superpixels as well as to retain the strong point targets. Finally, extensive experiments based on a simulated image and a real-world PolSAR image from Airborne Synthetic Aperture Radar (AirSAR are conducted, showing that the proposed algorithm, compared with three state-of-the-art methods, performs better in terms of several commonly used evaluation criteria with high computational efficiency, accurate boundary adherence, and homogeneous regularity.

  18. Una alternativa política para la literatura

    Directory of Open Access Journals (Sweden)

    Juan Carlos Moreno

    2006-01-01

    Full Text Available Frente al reciente debate entre los estudios culturales y el canonhumanista, este artículo intenta generar una crítica de los presupuestosde ambas corrientes, a fin de producir una alternativaque denominamos política, proponiendo el estudio de una determi

  19. Polímeros biodegradables. Importancia y potenciales aplicaciones

    OpenAIRE

    Labeaga Viteri, Aitziber

    2018-01-01

    Un polímero biodegradable es aquel que puede ser degradado completamente por el medio ambiente, reduciendo así el impacto ambiental que estos materiales producen. Por lo tanto, de acuerdo con esta definición, cuando un envase plástico biodegradable es

  20. Manuel Puig, la política, el umbral

    Directory of Open Access Journals (Sweden)

    Claudia Kozak

    2011-01-01

    Full Text Available El artículo lee en la literatura de Manuel Puig una concepción de lo político por fuera de los discursos políticos habituales. A partir de formas textuales que trabajan el "pliegue", "el entremedio" y el "umbral", particularmente en géneros íntimos y procedimientos vinculados a la espacialidad, lo político aparece como desestabilización de los discursos desde su interior, puesta en duda de las certezas, construcción de nuevas variedades de mundo que desde la ficción señalan hacia un pensamiento abierto a la transformación del mundo "tal cual es". El análisis focaliza en tres novelas escritas durante la década de 1970, que forman parte del "ciclo político" dentro de la narrativa de Puig, para buscar allí diversas formulaciones discursivas que construyen comunidad impolítica.

  1. Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog

    Czech Academy of Sciences Publication Activity Database

    Ma, W.; Gabriel, T.S.; Martis, M.M.; Gursinsky, T.; Schubert, V.; Vrána, Jan; Doležel, Jaroslav; Grundlach, H.; Altschmied, L.; Scholz, U.; Himmelbach, A.; Behrens, S.E.; Banaei-Moghaddam, A.M.; Houben, A.

    2017-01-01

    Roč. 213, č. 2 (2017), s. 916-928 ISSN 0028-646X R&D Projects: GA MŠk(CZ) LO1204; GA ČR GBP501/12/G090 Institutional support: RVO:61389030 Keywords : rna-polymerase-ii * ribosomal-rna * accessory chromosomes * plant argonautes * gene-expression * evolution * transcription * pseudogenes * sequences * identification * Argonaute * B chromosomes * B-located genes * gene erosion. gene expression * pseudogenization * Secale cereale Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Plant sciences, botany Impact factor: 7.330, year: 2016

  2. Copper (II)

    African Journals Online (AJOL)

    CLEMENT O BEWAJI

    Bhardwaj C. N., and Singh V. R., (1994), Synthesis and characterization of thallium (I) complexes of biologically active benzothiazolines, Indian Journal Chemistry 33(3): 423 - 425. Chakraborty H., Paul N., and Rahman M. L., (1994), Catalytic activities of Schiff bases aquo complexes of Cu (II) in the hydrolysis of amino acid ...

  3. "Ismos", "ícones" e intérpretes: as lógicas das "etiquetagens" na política de dois estados brasileiros (MA e RS

    Directory of Open Access Journals (Sweden)

    Igor Gastal Grill

    2012-10-01

    Full Text Available O trabalho de fabricação de "etiquetas" e "ícones" da política brasileira é examinado neste artigo. O foco recai sobre "vultos" e intérpretes da história política de dois estados brasileiros, Rio Grande do Sul (RS e Maranhão (MA, assim como sobre as versões produzidas acerca do "Getulismo", "Pasqualinismo", "Brizolismo", "Vitorinismo" e "Sarneysismo". O exercício de análise executado consistiu em perceber as ligações entre os intérpretes desses "ismos", os líderes políticos e os tecidos relacionais que dão sentido às identificações, distinções e tomadas de posição. Ou seja, foram analisados os recursos sociais sobre os quais assentam (i sua reputação política e intelectual (origem social, reconhecimento profissional, cargos políticos, títulos e pertencimento a instâncias de consagração intelectual; (ii seus alinhamentos políticos e (iii seus movimentos nos jogos faccionais nas duas configurações regionais. Mediante a análise dos seus itinerários e das modalidades de textos (biografias, livros e artigos de jornais produzidos, a reflexão explora os usos e a relevância, como instrumentos políticos e como meios de identificação: da ativação da memória política; das genealogias simbólicas; da personificação do capital simbólico; das relações de reciprocidade; do papel de mediação; das bases sociais e do domínio de uma forma de expressão que é a "escrita" ou da associação ao universo da intelectualidade.

  4. La Defensa, Política de Estado

    Directory of Open Access Journals (Sweden)

    Muñoz-Alonso, Alejandro

    2008-12-01

    Full Text Available The areas of the State Policy are set, specially focussing on the Defense as it is closely related to concepts like National Interest and Anglo-Saxon bipartisan policy. Nevertheless, the political alternation will cause differences. It is also necessary to tell the difference between the State Policy and the Policy carried out by the State. That’s why the democratic Parliaments play a fundamental role in shaping the defence policy. Although the Parliament symbolizes the National Sovereignty there can be and there are actually differences with the Public Opinion. This sort of divorce is not really new as, in Spain, it became evident in a very intensive way on the occasion of decisions such as the Spanish entry into the NATO. A State Policy related to Defense, kept during a long time and resistant to political alternation would certainly be the best instrument to reach a culture of defense.Se establecen los ámbitos de las políticas de estado, con especial énfasis en la Defensa al estar esta vinculada al concepto de interés nacional, y al anglosajón bipartisan policy. No obstante, la alternancia política va a crear discrepancias. Conviene diferenciar la “Política de Estado” y la “Política del Estado”. Por ello, los Parlamentos democráticos juegan un papel fundamental en la conformación de la política de defensa. Pese a que el Parlamento representa a la soberanía nacional pueden producirse, y de hecho se producen, discrepancias con la opinión pública. Este divorcio no es nuevo y en España se ha manifestado de forma muy intensa con ocasión de tomas de decisión como la incorporación a la OTAN. Una política de Estado en defensa, mantenida en el tiempo y resistente a las alternancias políticas sería el instrumento más adecuado para lograr una cultura de defensa.

  5. Políticas públicas: bienestar, reconocimiento, simulacro

    Directory of Open Access Journals (Sweden)

    Rafael Bayce

    2008-01-01

    Full Text Available Las políticas públicas son hijas del crecimiento de los Estados posrrenacentistas y de las necesidades de planificación administrativa de sociedades de masas. Las políticas conservadoras afirman la subsidiariedad del Estado, se centran en la familia y en el temor a la democracia y a los sindicatos. Las liberales se anclan en la corrección de fallas del mercado y de contingencias biológicas. Las socialdemócratas, más ambiciosas, aspiran a una previsión de todas las contingencias y desigualdades ilegítimas, desde un Estado orientador del mercado y no subsidiario. Los Estados de Bienestar surgen del intento de superar recesiones, desempleo y malestar social desde la inversión, hasta deficitaria, de Estados que esperan luego recuperar su inversión. Las nociones de soberanía y de derechos humanos dificultan ese retorno y nutren un crecimiento progresivo de los imaginarios de consumo que erosionan un sistema inicialmente exitoso, desde que no son más inversiones e intervenciones de emergencia sino parte del cálculo de bienestares colectivos e individuales. Son víctimas de su éxito. Pese a que los neoliberales subrayan las insuficiencias teóricas y los fallos históricos de las políticas públicas clásicas, llegados al poder todos las aplican porque la cultura política los supone y enfrentarla sería electoralmente suicida. Hasta los marxistas lo hacen. Sin embargo, la sociedad de consumo y la cultura posmoderna van creando un progresivo hiato entre la moderna oferta tecnoburocrática iluminista de satisfactores, y la más reciente demanda, socialmente mucho más exigente y variada. Deberían disfrutar, por ende, de utilidad marginal político-electoral decreciente. Pero en la medida en que son apreciadas, no por su sustancia material, sino por el ‘reconocimiento’ simbólico que implican, y porque las poblaciones-objetivo han internalizado como legítimas las ofertas iluministas, paterno-maternales, las políticas públicas todav

  6. II Jornada de Cultura Jurídica

    Directory of Open Access Journals (Sweden)

    Manuel Vial Dumas

    2016-07-01

    Full Text Available

    El passat 18 de març de 2016 es va celebrar a la seu institucional de la UOC (avinguda del Tibidabo, núm. 39-43 de Barcelona la II Jornada de Cultura Jurídica, organitzada pels Estudis de Dret i Ciència Política de la UOC i la Càtedra de Cultura Jurídica de la Universitat de Girona (UdG.

  7. Políticas Públicas e Estado: o Plano Real

    Directory of Open Access Journals (Sweden)

    Marcus Ianoni

    2009-01-01

    Full Text Available O artigo aborda o papel do Plano Real na reconstrução do Estado brasileiro. A tese principal é que havia então uma crise sociopolítica do Estado (crise de hegemonia do pacto de dominação e não apenas uma crise de governabilidade, segundo avaliava o pensamento predominante na literatura da ciência política brasileira à  época. O sucesso do Plano Real explica-se por ele ter sido o carro-chefe de um programa de mudança que foi conduzido num processo de repactuação sociopolítica liberal do poder de Estado. O envolvimento da esfera políticoinstitucional nesse processo de mudança logrou a superação da crise de governabilidade existente até 1993. No período histórico aberto pelo Plano Real, até o principal partido de esquerda, o PT, foi induzido a aderir, ao seu modo, desde a campanha eleitoral de 2002, a uma política macroeconômica liberal, embora o governo de coalizão de Lula esteja executando também políticas contra-hegemônicas. A análise identifica a origem e os determinantes da crise e algumas conjunturas de seu processo, com ênfase no governo Itamar Franco. O argumento mostra a importância da liderança política de Fernando Henrique Cardoso no processo do Plano Real, mas não adere a uma explicação voluntarista ou indeterminista, pois insere as ações dos sujeitos nos constrangimentos estruturais.

  8. Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes.

    Directory of Open Access Journals (Sweden)

    Lu Zhang

    2015-07-01

    Full Text Available The RNA polymerase II (Pol II is a eukaryotic enzyme that catalyzes the synthesis of the messenger RNA using a DNA template. Despite numerous biochemical and biophysical studies, it remains elusive whether the "secondary channel" is the only route for NTP to reach the active site of the enzyme or if the "main channel" could be an alternative. On this regard, crystallographic structures of Pol II have been extremely useful to understand the structural basis of transcription, however, the conformation of the unpaired non-template DNA part of the full transcription bubble (TB is still unknown. Since diffusion routes of the nucleoside triphosphate (NTP substrate through the main channel might overlap with the TB region, gaining structural information of the full TB is critical for a complete understanding of Pol II transcription process. In this study, we have built a structural model of Pol II with a complete transcription bubble based on multiple sources of existing structural data and used Molecular Dynamics (MD simulations together with structural analysis to shed light on NTP entry pathways. Interestingly, we found that although both channels have enough space to allow NTP loading, the percentage of MD conformations containing enough space for NTP loading through the secondary channel is twice higher than that of the main channel. Further energetic study based on MD simulations with NTP loaded in the channels has revealed that the diffusion of the NTP through the main channel is greatly disfavored by electrostatic repulsion between the NTP and the highly negatively charged backbones of nucleotides in the non-template DNA strand. Taken together, our results suggest that the secondary channel is the major route for NTP entry during Pol II transcription.

  9. Dynamic bookmarking of primary response genes by p300 and RNA polymerase II complexes.

    Science.gov (United States)

    Byun, Jung S; Wong, Madeline M; Cui, Wenwu; Idelman, Gila; Li, Quentin; De Siervi, Adriana; Bilke, Sven; Haggerty, Cynthia M; Player, Audrey; Wang, Yong Hong; Thirman, Michael J; Kaberlein, Joseph J; Petrovas, Constantinos; Koup, Richard A; Longo, Dan; Ozato, Keiko; Gardner, Kevin

    2009-11-17

    Profiling the dynamic interaction of p300 with proximal promoters of human T cells identified a class of genes that rapidly coassemble p300 and RNA polymerase II (pol II) following mitogen stimulation. Several of these p300 targets are immediate early genes, including FOS, implicating a prominent role for p300 in the control of primary genetic responses. The recruitment of p300 and pol II rapidly transitions to the assembly of several elongation factors, including the positive transcriptional elongation factor (P-TEFb), the bromodomain-containing protein (BRD4), and the elongin-like eleven nineteen lysine-rich leukemia protein (ELL). However, transcription at many of these rapidly induced genes is transient, wherein swift departure of P-TEFb, BRD4, and ELL coincides with termination of transcriptional elongation. Unexpectedly, both p300 and pol II remain accumulated or "bookmarked" at the proximal promoter long after transcription has terminated, demarking a clear mechanistic separation between the recruitment and elongation phases of transcription in vivo. The bookmarked pol II is depleted of both serine-2 and serine-5 phosphorylation of its C-terminal domain and remains proximally positioned at the promoter for hours. Surprisingly, these p300/pol II bookmarked genes can be readily reactivated, and elongation factors can be reassembled by subsequent addition of nonmitogenic agents that, alone, have minimal effects on transcription in the absence of prior preconditioning by mitogen stimulation. These findings suggest that p300 is likely to play an important role in biological processes in which transcriptional bookmarking or preconditioning influences cellular growth and development through the dynamic priming of genes for response to rechallenge by secondary stimuli.

  10. TSSPlant: a new tool for prediction of plant Pol II promoters

    Science.gov (United States)

    Umarov, Ramzan Kh.

    2017-01-01

    Abstract Our current knowledge of eukaryotic promoters indicates their complex architecture that is often composed of numerous functional motifs. Most of known promoters include multiple and in some cases mutually exclusive transcription start sites (TSSs). Moreover, TSS selection depends on cell/tissue, development stage and environmental conditions. Such complex promoter structures make their computational identification notoriously difficult. Here, we present TSSPlant, a novel tool that predicts both TATA and TATA-less promoters in sequences of a wide spectrum of plant genomes. The tool was developed by using large promoter collections from ppdb and PlantProm DB. It utilizes eighteen significant compositional and signal features of plant promoter sequences selected in this study, that feed the artificial neural network-based model trained by the backpropagation algorithm. TSSPlant achieves significantly higher accuracy compared to the next best promoter prediction program for both TATA promoters (MCC≃0.84 and F1-score≃0.91 versus MCC≃0.51 and F1-score≃0.71) and TATA-less promoters (MCC≃0.80, F1-score≃0.89 versus MCC≃0.29 and F1-score≃0.50). TSSPlant is available to download as a standalone program at http://www.cbrc.kaust.edu.sa/download/. PMID:28082394

  11. Missing links between histones and RNA Pol II arising from SAND?

    Science.gov (United States)

    Eukaryotic SAND domain-containing proteins bind DNA and are implicated in direct target gene activation and chromatin-mediated gene regulation. We summarize our recent results demonstrating that the Arabidopsis SAND domain protein ULTRAPETALA1 (ULT1) plays a key role in counteracting target gene rep...

  12. TSSPlant: a new tool for prediction of plant Pol II promoters

    KAUST Repository

    Shahmuradov, Ilham A.

    2017-01-13

    Our current knowledge of eukaryotic promoters indicates their complex architecture that is often composed of numerous functional motifs. Most of known promoters include multiple and in some cases mutually exclusive transcription start sites (TSSs). Moreover, TSS selection depends on cell/tissue, development stage and environmental conditions. Such complex promoter structures make their computational identification notoriously difficult. Here, we present TSSPlant, a novel tool that predicts both TATA and TATA-less promoters in sequences of a wide spectrum of plant genomes. The tool was developed by using large promoter collections from ppdb and PlantProm DB. It utilizes eighteen significant compositional and signal features of plant promoter sequences selected in this study, that feed the artificial neural network-based model trained by the backpropagation algorithm. TSSPlant achieves significantly higher accuracy compared to the next best promoter prediction program for both TATA promoters (MCC≃0.84 and F1-score≃0.91 versus MCC≃0.51 and F1-score≃0.71) and TATA-less promoters (MCC≃0.80, F1-score≃0.89 versus MCC≃0.29 and F1-score≃0.50). TSSPlant is available to download as a standalone program at http://www.cbrc.kaust.edu.sa/download/.

  13. Cu(II), Zn(II)

    African Journals Online (AJOL)

    stereochemistry has been suggested to Zn(II), Cd(II) and Hg(II) complexes. The thermal analysis data provided the kinetic parameters as order of decomposition reaction, activation energy and frequency factor. All theoretical calculations of the ligand and the Cu(II) and Zn(II) complexes were made using Gaussian 03 rev.

  14. Entre la política exterior y la política interna. De la Proclama de la Neutralidad al Plan de Paz (1983-1989

    Directory of Open Access Journals (Sweden)

    Carlos Humberto Cascante Segura

    2012-02-01

    Full Text Available Desde el concepto de uso de la memoria oficial, este artículo analiza los objetivos políticos internos de la política exterior costarricense entre 1983 y 1989. Con tal fin, el texto pretende establecer los objetivos internos que los gobiernos del periodo bajo estudio pretendieron conseguir a partir de su política exterior, así como los instrumentos que emplearon con tales fines. Se concluye que la política exterior del periodo no puede verse únicamente desde el plano internacional, sino que tuvo importantes repercusiones dentro del ámbito nacional.

  15. Fronteras morales y políticas sexuales: apuntes sobre 'la política LGBT' y el deseo del Estado

    OpenAIRE

    Hernández, Franklin Gil

    2013-01-01

    A partir de un seguimiento de políticas (gubernamentales, de los movimientos sociales y de la vida cotidiana) en la ciudad de Bogotá (Colombia), relacionadas con la ampliación de ciudadanías sexuales, este artículo trata sobre los territorios morales que dichas políticas crean, y sobre los cuerpos que desea el Estado o que reclaman ser deseados por él. Particularmente se analizan la 'política LGBT' y la 'política gay' en un contexto local y su paradójica contribución a la normalización de la ...

  16. Historia del pensamiento político moderno (00 Guía docente)

    OpenAIRE

    Sanz Díaz, Benito

    2010-01-01

    Historia del Pensamiento Político Moderno. HPPM La asignatura de Historia del Pensamiento Político se imparte en a la Licenciatura de Ciencias Políticas y de la Administración, Derecho y Sociologia y en grado. Historia del Pensamiento Político Moderno tiene como objetivo ofrecer una visión de aspectos centrales del pensamiento político moderno, del siglo XVI al XX . Los textos de los autores escogidos constituyen el punto de apoyo fundamental en el desarrollo del programa, por lo q...

  17. Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II

    Directory of Open Access Journals (Sweden)

    Ryan P. McNamara

    2016-03-01

    Full Text Available The transition of RNA polymerase II (Pol II from transcription initiation into productive elongation in eukaryotic cells is regulated by the P-TEFb kinase, which phosphorylates the C-terminal domain of paused Pol II at promoter-proximal regions. Our recent study found that P-TEFb (in an inhibited state bound to the 7SK snRNP complex interacts with the KAP1/TRIM28 transcriptional regulator, and that KAP1 and the 7SK snRNP co-occupy most gene promoters containing paused Pol II. Here we provide a detailed experimental description and analysis of the ChIP-seq datasets that have been deposited into Gene Expression Omnibus (GEO: GS72622, so that independent groups can replicate and expand upon these findings. We propose these datasets would provide valuable information for researchers studying mechanisms of transcriptional regulation including Pol II pausing and pause release. Keywords: P-TEFb/7SK snRNP, KAP1, RNA polymerase II, ChIP-seq, Transcription elongation

  18. Occurrence and evolution of the paralogous zinc metalloproteases IgA1 protease, ZmpB, ZmpC, and ZmpD in Streptococcus pneumoniae and related commensal species.

    Science.gov (United States)

    Bek-Thomsen, Malene; Poulsen, Knud; Kilian, Mogens

    2012-01-01

    The distribution, genome location, and evolution of the four paralogous zinc metalloproteases, IgA1 protease, ZmpB, ZmpC, and ZmpD, in Streptococcus pneumoniae and related commensal species were studied by in silico analysis of whole genomes and by activity screening of 154 representatives of 20 species. ZmpB was ubiquitous in the Mitis and Salivarius groups of the genus Streptococcus and in the genera Gemella and Granulicatella, with the exception of a fragmented gene in Streptococcus thermophilus, the only species with a nonhuman habitat. IgA1 protease activity was observed in all members of S. pneumoniae, S. pseudopneumoniae, S. oralis, S. sanguinis, and Gemella haemolysans, was variably present in S. mitis and S. infantis, and absent in S. gordonii, S. parasanguinis, S. cristatus, S. oligofermentans, S. australis, S. peroris, and S. suis. Phylogenetic analysis of 297 zmp sequences and representative housekeeping genes provided evidence for an unprecedented selection for genetic diversification of the iga, zmpB, and zmpD genes in S. pneumoniae and evidence of very frequent intraspecies transfer of entire genes and combination of genes. Presumably due to their adaptation to a commensal lifestyle, largely unaffected by adaptive mucosal immune factors, the corresponding genes in commensal streptococci have remained conserved. The widespread distribution and significant sequence diversity indicate an ancient origin of the zinc metalloproteases predating the emergence of the humanoid species. zmpB, which appears to be the ancestral gene, subsequently duplicated and successfully diversified into distinct functions, is likely to serve an important but yet unknown housekeeping function associated with the human host. The paralogous zinc metalloproteases IgA1 protease, ZmpB, ZmpC, and ZmpD have been identified as crucial for virulence of the human pathogen Streptococcus pneumoniae. This study maps the presence of the corresponding genes and enzyme activities in S

  19. Representação Política: modelos e problematizações.

    Directory of Open Access Journals (Sweden)

    Carolina Leister

    2014-06-01

    Full Text Available http://dx.doi.org/10.5007/2175-7984.2014v13n26p89 Primordialmente é introduzido um enquadre contratual para tratar da temática da representação política. Em seguida são apresentados três modelos de representação: (i modelo de representação na concepção sociológica ou representação como microcosmo; (ii modelo de representação na concepção do agente/principal; (iii modelo de representação na concepção burkeniana ou representação como autonomia. O objetivo deste artigo é estender-se sobre o segundo deles, o modelo de representação na concepção do agente/principal, por mostrar-se capaz de, em maior extensão, problematizar o conceito de representação política, particularmente se contraposto ao terceiro modelo, a representação na concepção de Burke, mas também com relação ao primeiro modelo, aquele da representação como microcosmo. Em seguida, são identificados alguns desses problemas levantados sobre o modelo do agente/principal, todos eles relativos à conexão/desconexão vontade do representado – decisão do representante. Finalmente são aventadas algumas abordagens que poderiam colaborar na proposição de soluções alternativas para esses problemas, particularmente a teoria dos grupos de Mancur Olson e a teoria da economia constitucional de James Buchanan. Estas soluções são calcadas na tentativa de construir desenhos institucionais que são enquadres para decisões políticas, de modo a garantir que o representante efetivamente adira ao interesse do corpo representado como um todo, em vez de seu próprio interesse e aquele de seu distrito eleitoral específico.

  20. O contratualismo como método: política, direito e neocontratualismo

    Directory of Open Access Journals (Sweden)

    J. R. N. Chiappin

    2010-02-01

    Full Text Available O objetivo deste artigo é apresentar o contratualismo como método e como o resultado de uma sistematização de outros métodos de construção do conhecimento. Enquanto o contratualismo clássico tem como paradigmas os modelos, geométrico e mecânico, da Física de Galileu e de Descartes - em particular, o modelo de escolha racional com Descartes -, o contratualismo rawlsiano tem como paradigma alguns modelos da microeconomia - em particular, o modelo de equilíbrio geral. O método contratualista tem como projeto a transformação, no século XVII, da política e do Direito em uma disciplina científica, assumindo que, no século XVII: (i o modelo do conhecimento é o modelo geométrico e o conhecimento é conhecimento certo; (ii o modelo de indivíduo admite-o como racional e auto-interessado; (iii há uma teoria racional da ação e decisão humana. Portanto, para viabilizar o projeto de transformar a política e o Direito em ciência, o contratualismo é aqui interpretado não substantivamente, mas instrumentalmente, como método para acessar os fundamentos do mundo político. O método contratualista persegue uma combinação do modelo científico do conhecimento das causas eficientes e de suas relações aos efeitos, com o modelo de conhecimento das causas finais como estudo dos fins ou das características funcionais das coisas. Para interpretarmos o contratualismo como método, admitimos o novo modelo da relação entre conhecimento e tecnologia elaborado pela ciência moderna, que sustenta que o conhecimento da natureza é um conhecimento de conquista e domínio capaz de produzir mecanismos tecnológicos de intervenção na natureza com o objetivo de, conhecendo e manipulando as causas, obter os efeitos desejados.

  1. Doença negligenciadas e políticas púbicas

    Directory of Open Access Journals (Sweden)

    Everton Nunes da SILVA

    2014-03-01

    Full Text Available O objetivo deste artigo é analisar as doenças negligenciadas no âmbito das políticas públicas que visam aprimorar os determinantes e condicionantes da saúde. Para tal, são analisados o Plano Brasil sem Miséria e Política Nacional de Ciência, Tecnologia e Inovação em Saúde. O primeiro foi instituído com o objetivo de atingir a população com rendimento domiciliar igual ou inferior a R$ 70,00 por pessoa. O Plano está estruturado em ações nacionais e regionais baseadas em três eixos: i garantia de renda ii inclusão produtiva; e iii serviços públicos. A segunda surge como um esforço interministerial – Saúde, Educação e Ciência e Tecnologia – para ratificar a importância do componente de ciência, tecnologia e inovação na saúde pública, visando desenvolver e otimizar os processos de produção e absorção de conhecimento científico e tecnológico pelos sistemas, serviços e instituições de saúde, centros de formação de recursos humanos, empresas do setor produtivo e demais segmentos da sociedade. Evidencia-se a necessidade de o SUS criar mecanismos de articulação para atingir o objetivo de mitigar os impactos negativos das doenças negligenciadas na população brasileira. Essa articulação não se restringe ao Ministério da Saúde isoladamente, mas com as demais instâncias do Estado, com os Ministérios da Educação, da Ciência, Tecnologia e Inovação, do Desenvolvimento, Indústria e Comércio Exterior, do Desenvolvimento Social e Combate à Pobreza. As duas políticas abordadas neste artigo sinalizam que é possível a cooperação das várias áreas da sociedade para a resolução desse problema específico da saúde.

  2. Transcription of potato spindle tuber viroid by RNA polymerase II starts predominantly at two specific sites

    OpenAIRE

    Fels, Andreas; Hu, Kanghong; Riesner, Detlev

    2001-01-01

    Pospiviroidae, with their main representative potato spindle tuber viroid (PSTVd), are replicated via a rolling circle mechanism by the host-encoded DNA-dependent RNA polymerase II (pol II). In the first step, the (+)-strand circular viroid is transcribed into a (–)-strand oligomer intermediate. As yet it is not known whether transcription is initiated by promotors at specific start sites or is distributed non-specifically over the whole circle. An in vitro transcription extract was prepared ...

  3. Co(II), Ni(II) and Zn(II)

    Indian Academy of Sciences (India)

    Unknown

    161. Synthesis, characterisation and electrochemical behaviour of. Cu(II), Co(II), Ni(II) and Zn(II) complexes derived from acetylacetone and p-anisidine and their antimicrobial activity. N RAMAN*, V MUTHURAJ, S RAVICHANDRAN and. A KULANDAISAMY. Department of Chemistry, VHNSN College, Virudhunagar 626 001 ...

  4. La política y lo político : Populismo y agonismo como formas de la política

    OpenAIRE

    Vázquez, Mariano Darío

    2013-01-01

    Este ensayo aborda la dimensión conflictiva como base del orden social y rechaza las posiciones liberales, las alternativas postpolíticas y los esencialismos de clase. En este sentido, recupera al antagonismo en la base de la articulación política como condición inerradicable para pensar la institución de la sociedad y asume que la constitución de un orden social precario, contingente y momentáneo evidencia una sutura ante la imposibilidad de un cierre definitivo. Este imposible manifiesta el...

  5. A interincompreensão gera polêmica: alteridade e heterogeneidade nos discursos das cantoras Anitta e Pitty sobre comportamento sexual feminino

    Directory of Open Access Journals (Sweden)

    Juliane de Araújo Gonzaga

    2017-01-01

    Full Text Available Este artigo se propõe a analisar a situação de polêmica entre as cantoras Anitta e Pitty, durante um programa televiso, em torno do comportamento das mulheres no domínio da sexualidade. Os objetivos específicos são: (i verificar como a alteridade e a heterogeneidade delimitam posições discursivas; (ii descrever a situação de polêmica e a mobilização de simulacros no processo de interincompreensão regrada e (iii analisar a situação de polêmica e demonstrar que a alteridade e a heterogeneidade materializam embates legitimados historicamente no campo da sexualidade. Situado na Análise do Discurso francesa, este trabalho utiliza referencial teórico-metodológico baseado nos pressupostos de Authier-Revuz (1990, 1998, acerca da alteridade e da heterogeneidade enunciativa, e nas considerações de Maingueneau (1993, 2005 sobre o primado do interdiscurso e a polêmica como interincompreensão regrada. O método de análise baseia-se na descrição e interpretação de marcas linguísticas (glosas, pronomes, dêiticos, vocabulário que materializam jogos de alteridade, movimentos de já-ditos e regras sobre o dizível e o indizível no discurso. Por fim, a análise conclui que os enunciados são heterogeneamente marcados e que as posições discursivas produzem situação de polêmica, pois são atravessadas por simulacros, estereótipos e embates históricos entre os gêneros no domínio da sexualidade.

  6. Encuestas políticas: Paradojas y aproximaciones.

    Directory of Open Access Journals (Sweden)

    Emili Utreras

    2008-09-01

    Full Text Available Las encuestas no son una bola de cristal para hacer predicciones del futuro, son un instrumento para conocer la realidad y poder actuar a futuro. En política se las usa para las campañas. Últimamente en el Ecuador la encuesta se ha convertido en una herramienta para la investigación de la opinión pública, ha sido utilizada en las campañas electorales para tener información sobre las opiniones y percepciones de los ciudadanos sobre la vida cotidiana o la coyuntura política. Las encuestas solo recaban información de la población para conocer sus percepciones y opiniones.

  7. Ecologia política: Guerreiro Ramos e Fritjof Capra

    Directory of Open Access Journals (Sweden)

    Boeira Sérgio Luís

    2002-01-01

    Full Text Available Este ensaio tem por objetivo contribuir com a articulação de um campo de pesquisa trans-disciplinar, a ecologia política, por meio da síntese comparativa de duas obras: A Nova Ciência das Organizações, de Alberto Guerreiro Ramos (1981, e O Ponto de Mutação, de Fritjof Capra (1982. A hipótese central deste trabalho é que os autores, apesar de suas formações acadêmicas muito diferentes, chegaram a resultados muito semelhantes nestas obras, a partir de um mesmo paradigma emergente. Dado o contexto ainda difuso do pensamento ambientalista, estes livros podem ser considerados clássicos da ecologia política.

  8. El pensamiento político de Macanaz

    Directory of Open Access Journals (Sweden)

    Rosa María Alabrús Iglésies

    2005-01-01

    Full Text Available Este artículo analiza el pensamiento político de Macanaz a partir de un texto autobiográfico que se custodia en la Biblioteca Nacional de Madrid. Tres aspectos quedan reflejados: la actitud contra la Corona de Aragón durante la Guerra de Sucesión y sobre los decretos de Nueva Planta; la visión sobre la política europea de Felipe V; y el regalismo, con el consiguiente enfrentamiento con la Santa Sede y la Inquisición.This article examines Macanaz’s political thought from an autobiographical writing located in the National Library of Madrid. Three aspects are considered: the attitude against the Crown of Aragon during the War of Succession and about the New Plant decrees; the vision on the European policy of Philip V of Spain; and the regalism, with the consequent confrontation with the Holy See and the Inquisition.

  9. Hopf Bifurcation of Compound Stochastic van der Pol System

    Directory of Open Access Journals (Sweden)

    Shaojuan Ma

    2016-01-01

    Full Text Available Hopf bifurcation analysis for compound stochastic van der Pol system with a bound random parameter and Gaussian white noise is investigated in this paper. By the Karhunen-Loeve (K-L expansion and the orthogonal polynomial approximation, the equivalent deterministic van der Pol system can be deduced. Based on the bifurcation theory of nonlinear deterministic system, the critical value of bifurcation parameter is obtained and the influence of random strength δ and noise intensity σ on stochastic Hopf bifurcation in compound stochastic system is discussed. At last we found that increased δ can relocate the critical value of bifurcation parameter forward while increased σ makes it backward and the influence of δ is more sensitive than σ. The results are verified by numerical simulations.

  10. Políticas de seguridad informática

    Directory of Open Access Journals (Sweden)

    Ciro Antonio Dussan Clavijo

    2006-01-01

    Full Text Available La globalización de la economía ha exigido que las empresas implementen plataformas tecnológicas que soporten la nueva forma de hacer negocios. El uso de Internet para este fin, conlleva a que se desarrollen proyectos de seguridad informática que garanticen la integridad, disponibilidad y accesibilidad de la información. La creación de políticas de seguridad es una labor fundamental que involucra las personas, los procesos y los recursos de la compañía. Este articulo presenta los puntos clave a tener en cuenta para diseñar una política de seguridad basándose en la norma ISO 17799.

  11. Uma alternativa para a política nutricional brasileira?

    Directory of Open Access Journals (Sweden)

    Sonia Azevedo Bittencourt

    Full Text Available O artigo focaliza a proposta de alimentação alternativa enquanto tema da política pública. Para isso, são assinaladas questões importantes e controvertidas quanto à eficácia e segurança da multimistura. Analisa também seis estudos epidemiológicos enfocando aspectos metodológicos relevantes à avaliação da confiabilidade dos resultados encontrados. Conclui-se que as muitas ambigüidades, lacunas e contradições do conhecimento não sustentam a incorporação da intervenção proposta no nível de política alimentar e nutricional brasileira.

  12. Uma alternativa para a política nutricional brasileira?

    Directory of Open Access Journals (Sweden)

    Bittencourt Sonia Azevedo

    1998-01-01

    Full Text Available O artigo focaliza a proposta de alimentação alternativa enquanto tema da política pública. Para isso, são assinaladas questões importantes e controvertidas quanto à eficácia e segurança da multimistura. Analisa também seis estudos epidemiológicos enfocando aspectos metodológicos relevantes à avaliação da confiabilidade dos resultados encontrados. Conclui-se que as muitas ambigüidades, lacunas e contradições do conhecimento não sustentam a incorporação da intervenção proposta no nível de política alimentar e nutricional brasileira.

  13. Governamentalidade e a genealogia da política

    Directory of Open Access Journals (Sweden)

    Colin Gordon

    2013-12-01

    Full Text Available O artigo oferece uma série de reflexões a respeito de uma fase dos trabalhos de Michel Foucault e de alguns de seus colaboradores apresentada no volume The Foucault effect: studies in governmentality (1991, coeditado pelo autor. Tais reflexões se organizam em três partes. Primeiro, há uma revisão de alguns aspectos das aulas de Foucault sobre governamentalidade que, por diferentes razões, foram deixados de lado quando o livro foi publicado. Em seguida, faz-se um balanço de temas importantes que, embora presentes no livro, não receberam suficiente atenção dos leitores. Finalmente, no eixo que ocupa a maior parte do artigo, examinam-se as últimas discussões de Foucault a respeito do que o autor denomina múltiplos nascimentos da política, a fim de demonstrar a continuidade da pertinência do empreendimento foucaultiano nos anos 1970, tornado possível devido à noção de governamentalidade, ao mesmo tempo tão estranha e operacional. Tal atualidade é indicada não somente pelo incremento dos estudos sobre governamentalidade após o aparecimento dos cursos que Foucault deu no Collège de France, mas principalmente pelos dilemas e aporias que a cultura política em que estamos mergulhados nos trouxe. Nesse sentido, o artigo se encerra com uma espécie de agenda de pesquisa para dar continuidade ao trabalho inacabado de Foucault, uma agenda que nos convida a aprofundar nossa compreensão das relações entre a filosofia crítica, a racionalidade política e a cultura política, compreendidas como um conjunto de formas de conduta e de sociabilidade, modos de vida e estilos de subjetivação e dizer verdadeiro.

  14. Política oriental de India: Mitos y realidades

    Directory of Open Access Journals (Sweden)

    Vaidyanathan Shivkumar

    2015-07-01

    Full Text Available La política exterior de la India desde su independencia el 15 agosto de 1947, ha sido de cooperación y conciliación, y no de confrontación. Ésta podría haber sido ampliada cuando los infiltrados pakistaníes entraron en el territorio de la India en 1948, ya que el entonces Primer Ministro instó a que este asunto se remitiera al recién formado Consejo Mundial de Naciones Unidas. Si se recorre la historia, encontraríamos que las tres guerras entre India y Pakistán fueron iniciadas por Pakistán ante lo cual la India tuvo que defender su territorio. Similar situación surgió cuando China rompió unilateralmente el acuerdo de Pancha Sheel, invadiendo el territorio de la India. Este artículo hace un modesto intento de trazar la política de la India hacia el cercano oriente o hacia las naciones del sureste. Describe los vínculos históricos y culturales entre la India y las naciones del sur de Asia oriental y la consolidación definitiva de la “política hacia el oriente de la India”. En este artículo se toman en consideración los intereses económicos y estratégicos de la región y se espera que pudiera permitir a los lectores entender la política de la India hacia las naciones del sudeste de Asia.

  15. Religião, cultura e política

    Directory of Open Access Journals (Sweden)

    Maria das Dores Campos Machado

    2012-01-01

    Full Text Available Este artigo analisa os embates em curso na esfera pública brasileira envolvendo atores políticos com programas culturais bem distintos: católicos, evangélicos e os movimentos feministas e LGBTT. Dividido em quatro seções, inicia com uma apresentação da linha interpretativa adotada e uma breve análise das relações entre Estado e Igreja no século XX. Na seção seguinte, procura-se mostrar como o avanço das políticas de direitos humanos em atendimento às demandas dos movimentos feministas e gays se dá concomitantemente ao crescimento dos evangélicos na política partidária e no poder legislativo e como essas tendências contraditórias tencionam a arena pública. Na terceira seção, examina-se mais detalhadamente a agenda política, a participação dos evangélicos fluminenses nos poderes executivo e legislativo na primeira década do século XXI e o ativismo religioso conservador nas eleições de 2010. Nas considerações finais, procura-se mostrar que, a despeito dos conflitos de interesse entre os atores católicos e evangélicos, parcerias vêm sendo desenvolvidas entre coletivos religiosos de ambos os lados com o objetivo de impedir a criação de uma moralidade sexual de caráter laico.

  16. Hannah Arendt: política y singularidad

    Directory of Open Access Journals (Sweden)

    Julia Kristeva

    2000-01-01

    Full Text Available En el centro de la polémica a raíz de la publicación del libro de Alan Sokal sobre las imposturas intelectuales, sin eludir lo problemático del concepto de postmodernidad ni las discusiones acerca del uso de la metáfora y de las analogías en la construcci

  17. Characterization of transport mechanisms and determinants critical for Na+-dependent Pi symport of the PiT family paralogs human PiT1 and PiT2

    DEFF Research Database (Denmark)

    Bøttger, Pernille; Hede, Susanne E; Grunnet, Morten

    2006-01-01

    The general phosphate need in mammalian cells is accommodated by members of the P(i) transport (PiT) family (SLC20), which use either Na(+) or H(+) to mediate inorganic phosphate (P(i)) symport. The mammalian PiT paralogs PiT1 and PiT2 are Na(+)-dependent P(i) (NaP(i)) transporters...... and are exploited by a group of retroviruses for cell entry. Human PiT1 and PiT2 were characterized by expression in Xenopus laevis oocytes with (32)P(i) as a traceable P(i) source. For PiT1, the Michaelis-Menten constant for P(i) was determined as 322.5 +/- 124.5 microM. PiT2 was analyzed for the first time...... and showed positive cooperativity in P(i) uptake with a half-maximal activity constant for P(i) of 163.5 +/- 39.8 microM. PiT1- and PiT2-mediated Na(+)-dependent P(i) uptake functions were not significantly affected by acidic and alkaline pH and displayed similar Na(+) dependency patterns. However, only PiT2...

  18. Super Resolution Fluorescence Microscopy and Tracking of Bacterial Flotillin (Reggie Paralogs Provide Evidence for Defined-Sized Protein Microdomains within the Bacterial Membrane but Absence of Clusters Containing Detergent-Resistant Proteins.

    Directory of Open Access Journals (Sweden)

    Felix Dempwolff

    2016-06-01

    Full Text Available Biological membranes have been proposed to contain microdomains of a specific lipid composition, in which distinct groups of proteins are clustered. Flotillin-like proteins are conserved between pro-and eukaryotes, play an important function in several eukaryotic and bacterial cells, and define in vertebrates a type of so-called detergent-resistant microdomains. Using STED microscopy, we show that two bacterial flotillins, FloA and FloT, form defined assemblies with an average diameter of 85 to 110 nm in the model bacterium Bacillus subtilis. Interestingly, flotillin microdomains are of similar size in eukaryotic cells. The soluble domains of FloA form higher order oligomers of up to several hundred kDa in vitro, showing that like eukaryotic flotillins, bacterial assemblies are based in part on their ability to self-oligomerize. However, B. subtilis paralogs show significantly different diffusion rates, and consequently do not colocalize into a common microdomain. Dual colour time lapse experiments of flotillins together with other detergent-resistant proteins in bacteria show that proteins colocalize for no longer than a few hundred milliseconds, and do not move together. Our data reveal that the bacterial membrane contains defined-sized protein domains rather than functional microdomains dependent on flotillins. Based on their distinct dynamics, FloA and FloT confer spatially distinguishable activities, but do not serve as molecular scaffolds.

  19. La política social del gobierno del cambio

    Directory of Open Access Journals (Sweden)

    Laura Mota Díaz

    2002-01-01

    Full Text Available El artículo se centra en la política social del actual sexenio foxista, la cual se ha definido como incluyente y equitativa dentro del marco de un gobierno autodenominado del cambio, no sólo por lo que se refiere a la alternancia política del poder, sino porque además pretende ser un gobierno con una visión más amplia del desarrollo; lo que se traduce en “nuevas” estrategias para alcanzar la democracia, la equidad, la justicia social y el bienestar general de la población. El objetivo es analizar las posibilidades y limitaciones de un verdadero cambio que contribuya a mejorar la calidad de vida de la población en su sentido más amplio, pues los retos son cada vez mayores dado el incremento en los niveles de pobreza, el creciente desempleo y la constante violación a los derechos humanos. Palabras clave: pobreza, política social, democracia, participación.

  20. Os controles políticos sobre a burocracia

    Directory of Open Access Journals (Sweden)

    Cecília Olivieri

    2011-10-01

    Full Text Available O artigo revisa a literatura sobre os temas da relação entre política e burocracia e dos controles democráticos sobre a burocracia analisando três conjuntos de obras: a produção weberiana sobre a relação entre governo e burocracia, a literatura norteamericana e a produção nacional. A obra weberiana nos permite estabelecer com precisão as características centrais da burocracia moderna, seu papel no governo democrático contemporâneo e a necessidade do controle dos políticos sobre a burocracia. O debate norte-americano, por sua vez, explicita a ausência, no Brasil, de discussão sobre a relação entre política e burocracia na perspectiva democrática. A despeito desta ausência, analisamos a literatura nacional contemporânea com o objetivo de traçar um panorama da situação dos controles sobre a burocracia no Brasil e compreender, ainda que de forma incipiente, como funcionam os mecanismos de controle, em especial a nomeação, o orçamento, a legislação e o monitoramento.

  1. O lugar da mulher é na política?

    Directory of Open Access Journals (Sweden)

    Nélida Reis Caseca Machado

    2015-06-01

    Full Text Available O nome atribuído a este artigo é provocativo e tem o intuito de apontar os caminhos trilhados nesta pesquisa. É que, mesmo diante de todo o avanço social, a mulher continua fazendo sua trajetória de vida indagando onde é o seu lugar, bem como é olhada pelos outros que também perguntam onde é o lugar dela. Este trabalho possui, então, o intuito de questionar e apontar os possíveis motivos pelos quais, no Brasil, as mulheres não participam ou participam pouco da política. Para tanto, faz uma abordagem em três eixos que nortearão todos os raciocínios: a mulher não participa porque não pode, porque não quer e, também, porque ninguém quer. Pretende chamar a atenção dos acadêmicos para a pouca participação da mulher na política e acerca da apatia geral e isso pode, de alguma forma, influenciar o cenário de participação feminina na seara política.

  2. Controlling optics contamination at the PolLux STXM

    Science.gov (United States)

    Watts, B.; Pilet, N.; Sarafimov, B.; Witte, K.; Raabe, J.

    2018-04-01

    Contamination of X-ray mirror surfaces by carbon is a common issue that can significantly degrade the optical performance of the instrument. The effects can be severe at photon energies near the carbon K-edge (ca. 300 eV), where the X-rays are strongly attenuated, but also significant at higher photon energies where the carbon coating affects the reflectivity and surface shape of the mirrors. [1] The Swiss Light Source has typically relied on in-situ plasma cleaning to control mirror contamination and the PolLux scanning transmission X-ray microscopy (STXM) beamline has also been employing further contamination reduction strategies in recent years. In particular, in 2014 we installed a 1×10‑8 mbar background pressure of O2 on the PolLux first mirror chamber. We present a history of efforts to control optical contamination at the PolLux beamline and report on the observed efficiencies of the different processes employed both for the in-vacuum optics and critical components of the frequently vented STXM experiment chamber.

  3. Políticas del posgrado en México

    Directory of Open Access Journals (Sweden)

    Víctor Martiniano Arredondo Galván

    2006-01-01

    Full Text Available El artículo define, documenta y analiza la evolución de las políticas públicas de la educación superior en México, específicamente del posgrado. Se subraya que el desarrollo del posgrado en el país ha estado supeditado al devenir de la educación superior y al de la ciencia y la tecnología. A su vez se hace hincapié en que las políticas públicas han sido promovidas e instrumentadas por una diversidad de organismos e instancias ubicadas en la administración pública. Un punto medular del trabajo está en las consideraciones en torno a las políticas públicas del posgrado actual; las cuales están supeditadas y gravitan sobre el instrumento que conjuntamente la SEP y el CONACYT han establecido en los últimos años: el Programa de Fortalecimiento del Posgrado Nacional, el cual instituye un nuevo Padrón Nacional de Posgrado que clasifica los programas como competentes a nivel internacional y como de alto nivel; así como su reconocimiento en cuanto a su complejidad y heterogeneidad.

  4. Arte fotográfico y política

    Directory of Open Access Journals (Sweden)

    François Soulages

    2014-12-01

    Full Text Available Es difícil pensar las relaciones entre arte fotográfico y política, ya que un malestar invade la fotografía a tal punto que las manipulaciones políticas recientes producen engaños y utilizan la fotografía para estos fines. Debemos redefinir y dialectizar los conceptos de estética y política. Y, para esto, debemos analizar la evolución, durante medio siglo, de las condiciones y las modalidades de producción de reportajes fotográficos, en particular de los reportajes de guerra, y estudiar las condiciones ideológicas de presentación, de exposición y de comunicación de la imágenes fotográficas producidas, y hacer esto en los museos, en la prensa y en el Internet. Los riesgos: la libertad de hacer, de ver, de pensar, de vivir...

  5. Reformas constitucionales y competencia política en Bolivia

    Directory of Open Access Journals (Sweden)

    Mario Torrico

    2017-03-01

    El presente artículo explica  las  causas  y  efectos del cambio institucional en contextos políticos en los que no hay garantía sobre el cumplimiento estricto de  las reglas.  Analizando  la  reforma  política  de  2005  que  posibilitó  (por primera vez  que   en   Bolivia   los   prefectos   o  gobernadores  puedan  ser elegidos por voto popular,  se  halla  evidencia  que  indica  que  cuando  hay crisis  de  legitimidad,  las  coaliciones  declinantes  impulsan  cambios inclu-yentes  que  reducen   sus   futuras   pérdidas  electorales  y  no  pueden  ser revertidos por las coaliciones ascendentes que llegan al poder. No obstante, éstas intentan limitar el grado de inclusión de las reglas a través de cambios normativos de menor nivel que disminuyen la competencia política.

  6. Política de antibióticos

    Directory of Open Access Journals (Sweden)

    Juan José Pisonero Socías

    Full Text Available La utilización inadecuada de los antimicrobianos ha traído como consecuencia un incremento de la resistencia de los microorganismos y un aumento en los costos hospitalarios. Esta situación provoca mala calidad en el servicio. Durante 2 años se aplicó una política racional inducida a reducir el uso, o poner en reposo, a los antimicrobianos poco efectivos o inefectivos, en todo el servicio médico del Hospital Clinicoquirúrgico Docente "Joaquín Albarrán", de Ciudad de La Habana, Cuba. Se aplicaron procederes y métodos creados por un equipo multidisciplinario. La forma de restricción del uso de antimicrobianos, a partir de un Grupo de Control, muestra alentadores resultados. En el trabajo se explican las funciones de este grupo. Se obtuvieron resultados concretos en la disminución de la resistencia microbiana frente a los antimicrobianos más utilizados. Son significativos los datos que muestran la reducción de costos y volúmenes de antibióticos usados en relación con el año de referencia, período en el que aún no se practicaba la política actual. La investigación demostró, que esta política es aplicable en cualquier hospital, a bajo costo y con resultados a corto plazo

  7. A coevolução entre políticas públicas/instituições e o desenvolvimento tecnológico: o caso da Petrobras Biocombustível

    Directory of Open Access Journals (Sweden)

    Samuel Façanha Câmara

    2015-12-01

    Full Text Available Resumo:O presente trabalho teve como objetivo principal analisar a coevolução das políticas públicas/instituições e das capacidades tecnológicas da Petrobras Biocombustível (PBio. Para tanto, o estudo considerou uma abordagem teórica associada à corrente neoshumpteriana, analisando sua evolução no período de 2004 até 2012. A análise demonstrou que: i a PBio/Petrobras alcançou maiores níveis de capacidades tecnológicas em suas rotas industriais se comparadas às tecnologias agrícolas que induziu; e ii as políticas/instituições do setor evoluíram, principalmente em relação à política industrial de financiamento e à política de estímulo à demanda. Entretanto, os níveis das políticas/instituições, embora elevados no setor, não estabeleceram níveis tecnológicos de fronteira internacional, indicando que esse salto se dará por meio de mais esforços internos.

  8. La política supranacional : un nuevo campo de conocimiento para abordar las políticas educativas en un mundo globalizado

    OpenAIRE

    Valle, Javier M.

    2012-01-01

    El presente artículo trata de explicar la aparición de la Política Educativa Supranacional como área del saber pedagógico, en íntima conexión con la Política Educativa, la Educación Comparada y la Educación Internacional, tratando de acotar s

  9. Historia, género y política. Movimientos de mujeres y participación política en Colombia, 1930-1991

    OpenAIRE

    Medófilo Medina

    1996-01-01

    Lola G. Luna; Norma Villarreal. Historia, género y política. Movimientos de mujeres y participación política en Colombia, 1930-1991. Barcelona, Seminario Interdisciplinar Mujeres y Sociedad. Universidad de Barcelona. CICYT. 1994, 205 páginas.

  10. Política nacional de assistência social: uma avaliação política

    OpenAIRE

    Araujo, Victor Martins Lopes de

    2013-01-01

    Este trabalho tem com objetivo principal realizar uma avaliação política da Política Nacional de Assistência Social através de uma leitura crítica de seus textos legais. Nesse sentido, realizou-se uma fundamentação teórica pautada na discussão das diferentes concepções de Estado encontradas na teoria social clássica bem como na teoria social crítica, sendo feito também uma discussão a respeito da administração como forma de dominação, nos apropriamos do debate acerca da burocracia presente em...

  11. Seminario Políticas Públicas y Gestión Estatal | Tema 2: Ciclo y agenda de las políticas públicas

    OpenAIRE

    Pagani, María Laura

    2017-01-01

    Presentación general del ciclo de política pública y las diferentes etapas. Sus limitaciones como recurso de análisis de las PP. Agenda Social y Agenda Política: los procesos de construcción de la Agenda política, diseño. Definición de política pública. Presentación general del ciclo de política pública y las diferentes etapas. Sus limitaciones como recurso de análisis de las PP. La formación de la agenda y la definición de problema público. Las diferentes agendas: la agenda ciudadana, públic...

  12. Política de descentralización: Administración gubernamental y políticas públicas

    OpenAIRE

    Rengifo Esquivel, Angela Cristina; Castro La Rosa, Juan Pablo

    2013-01-01

    La obra describe una definición acerca de la política de descentralización, aborda los antecedentes, dimensiones del proceso, marco institucional, desarrollo normativo y los actores que participan en la política de descentralización en el Perú. Además, explica detalles acerca de la política de descentralización según el Acuerdo Nacional, la política de descentralización según el plan bicentenario y los medios para la implementación de la política de descentralización. Finalmente desarrolla un...

  13. Hábitos comunicativos y política. Efectos en las actitudes políticas de la población mexicana

    OpenAIRE

    Aruguete, Natalia

    2012-01-01

    Mucho se ha analizado acerca de la relación entre medios y actitudes políticas, enel marco de la investigación en comunicación política. Los estudios se dividen entreaquellos que asumen que la cobertura mediática de la política declina el interésciudadano hacia ella y los que sostienen que los medios promueven un mayorcompromiso cívico y político. Asumiendo que la relación entre medios y opiniónpública no es unidimensional, y que no hay un único factor en la formación deactitudes hacia la pol...

  14. O trabalho familiar extrativista sob a influência de políticas públicas

    Directory of Open Access Journals (Sweden)

    Dalva Maria da Mota

    2014-01-01

    Full Text Available O artigo analisa a relação entre a organização do trabalho familiar no extrativismo e a participação em programas de políticas públicas no estado de Sergipe. Com abordagem predominantemente qualitativa, a pesquisa foi realizada com mulheres autodesignadas catadoras de mangaba e marisqueiras, reconhecidas como pertinentes ao segmento dos denominados povos e comunidades tradicionais e afiliadas ao Programa Bolsa Família (PBF, ao Seguro Desemprego do Pescador Artesanal (SDPA e ao Programa de Aquisição de Alimentos (PAA. A metodologia constou de observações e entrevistas com diferentes atores envolvidos na atividade extrativista e nos programas de políticas públicas. As principais conclusões mostram que os programas de políticas públicas influenciam: i na reorganização do cotidiano do trabalho no extrativismo, principalmente no tocante à diminuição do envolvimento de crianças e jovens na atividade e quanto à intensidade das jornadas; ii no reforço aos papéis tradicionais de homens e mulheres, no caso do PBF, e na diluição de fronteiras entre esses mesmos papéis no PAA; iii na diminuição do volume de trabalho no caso do SDPA e no aumento no PAA; e iv nos diferentes sentidos que são atribuídos ao trabalho.

  15. Participación política y pertenencia a grupos políticos: Los límites de las explicaciones individuales y la necesidad de considerar el contexto político

    OpenAIRE

    LAURA MORALES DÍEZ DE ULZURRUN

    2001-01-01

    El estudio de los factores que influyen en la participación política de los ciudadanos se ha limitado tradicionalmente al análisis de las características sociopolíticas del individuo. Esto corrobora la necesidad de introducir elementos políticos contextuales en los cuales los ciudadanos se mueven cuando intentan explicar las razones de pertenencia a grupos u organizaciones de naturaleza política. Se ofrece una reflexión conceptual y metodólogica acerca del estudio de este tipo de participació...

  16. El desprestigio de la política: lo que no se discute

    Directory of Open Access Journals (Sweden)

    Beatriz Stolowicz

    2006-01-01

    Full Text Available Casi es un lugar común reconocer el desprestigio actual de la política, de los partidos y de los políticos. El fenómeno es común a toda América Latina, a pesar de las diferencias observables en las realidades políticas entre los países, Una primera manifestación de este desprestigio es el rechazo al elitismo político, que se expresa en afirmaciones como "todos los políticos son iguales", "se representan a si mismos", "no luchan por ideas, sino por prebendas", "se han alejado de la gente". En estas expresiones de rechazo existe un fuerte componente ético, que descalifica a los políticos de manera personal y, por extensión, a la politica en general.

  17. Al margen del poder y de la comunidad: la "cultura Política" del clientelismo

    Directory of Open Access Journals (Sweden)

    Lucía Mantilla

    2013-01-01

    Full Text Available Este trabajo busca destacar la diferencias entre los conceptos pol tico, pol tica y cultura pol tica, con el fin de arribar a la imposibilidad de situar el clientelismo en el lugar vac o, instituyente y discursivo donde se ubica lo pol tico; de este modo, tambi n resulta m s claro vislumbrar la distancia entre el clientelismo y las relaciones de poder. Si el clientelismo es una cultura pol tica, es necesario agregar que opera, a la inversa, inhibiendo y ahogando la pol tica. El clientelismo funciona a trav s del control de recursos y la distribuci n de privilegios entre los pr ximos; cuando se le ve como intercambio rec proco, te ido de valores morales como la lealtad y la solidaridad, se remite a la cl sica tipolog a hist rica que opone comunidad y sociedad moderna. Esta perspectiva resulta insostenible a la luz de la propuesta de Roberto Esposito.

  18. Los efectos de la comunicación política en el comportamiento electoral

    OpenAIRE

    Ismael Crespo Martínez*; Cristina Moreno Martínez

    2016-01-01

    La comunicación política es un aspecto fundamental de todos los procesos políticos contemporáneos. De hecho, el análisis político de la realidad, bien sea para realizar cálculos estratégicos, o bien para tratar de profundizar en la comprensión de las dinámicas socio-políticas, ya no puede obviar el papel central de la comunicación política en las sociedades. A partir de esta afirmación, los autores exponen a través de un recorrido histórico la influencia y efectos de la comunicación en la pol...

  19. Leer lo estético desde lo político

    OpenAIRE

    Verónica Peñafiel

    2013-01-01

    En el Ecuador, y específicamente en la vida política del país, el teatro ha jugado un papel más importante del que se le ha reconocido. Pensar lo estético relacionado con lo político, puede ser una interesante clave de lectura para el teatro quiteño y, me arriesgo a afirmar, para el teatro a secas. Este análisis no se lo hará desde el teatro político, se pretende, más bien, analizar la dimensión política del mismo y de la relación entre teatro y política. Dicha dimensión política ha tomado di...

  20. Los efectos de la comunicación política en el comportamiento electoral

    Directory of Open Access Journals (Sweden)

    Ismael Crespo Martínez

    2015-07-01

    Full Text Available La comunicación política es un aspecto fundamental de todos los procesos políticos contemporáneos. De hecho, el análisis político de la realidad, bien sea para realizar cálculos estratégicos, o bien para tratar de profundizar en la comprensión de las dinámicas socio-políticas, ya no puede obviar el papel central de la comunicación política en las sociedades. A partir de esta afirmación, los autores exponen a través de un recorrido histórico la influencia y efectos de la comunicación en la política, incluyendo las nuevas tendencias con los avances de las tecnologías de la comunicación