WorldWideScience

Sample records for platform integration problems

  1. Stabilisation problem in biaxial platform

    Directory of Open Access Journals (Sweden)

    Lindner Tymoteusz

    2016-12-01

    Full Text Available The article describes investigation of rolling ball stabilization problem on a biaxial platform. The aim of the control system proposed here is to stabilize ball moving on a plane in equilibrium point. The authors proposed a control algorithm based on cascade PID and they compared it with another control method. The article shows the results of the accuracy of ball stabilization and influence of applied filter on the signal waveform. The application used to detect the ball position measured by digital camera has been written using a cross platform .Net wrapper to the OpenCV image processing library - EmguCV. The authors used the bipolar stepper motor with dedicated electronic controller. The data between the computer and the designed controller are sent with use of the RS232 standard. The control stand is based on ATmega series microcontroller.

  2. Stabilisation problem in biaxial platform

    Science.gov (United States)

    Lindner, Tymoteusz; Rybarczyk, Dominik; Wyrwał, Daniel

    2016-12-01

    The article describes investigation of rolling ball stabilization problem on a biaxial platform. The aim of the control system proposed here is to stabilize ball moving on a plane in equilibrium point. The authors proposed a control algorithm based on cascade PID and they compared it with another control method. The article shows the results of the accuracy of ball stabilization and influence of applied filter on the signal waveform. The application used to detect the ball position measured by digital camera has been written using a cross platform .Net wrapper to the OpenCV image processing library - EmguCV. The authors used the bipolar stepper motor with dedicated electronic controller. The data between the computer and the designed controller are sent with use of the RS232 standard. The control stand is based on ATmega series microcontroller.

  3. CORBA Based Information Integration Platform for CIMS

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A new information integration platform for computer integrated manufacturing system(CIMS) is presented, which is based on agent and CORBA. CORBA enhances the system integration be-cause it is an industry-standard for interoperable, distributed objects across heterogeneous hardware andsoftware platform. Agent technology is used to improve intelligence of integration system. In order to im-plement the information integration platform, we use network integration server to integrate network, de-sign a generic database agent to integrate database, adopt multi-agent based architecture to integrate appli-cation, and utilize wrapper as CORBA object to integrate legacy code.

  4. Routing problems based on hils system platform

    Directory of Open Access Journals (Sweden)

    Andrzej Adamski

    2015-03-01

    Full Text Available Background: The logistic systems are very complex socio-technical systems. In this paper the proposal of application of the hierarchical multi-layers system platform HILS approach for the solution of the complex vehicle routing problems is presented. The interactive system functional structure was proposed which by intelligent dedicated inter-layers interactions enables the professional solutions of these practical problems. To illustrate these capabilities the complex example of the real-time VRP-SPD-TW routing problem was presented in which upper layers offers the context-related real-time updating network specifications that stimulates the adequate routing parameters and specifications updating for problem solution in optimization layer. At the bottom dispatching control layer the DISCON (Dispatching CONtrol method from public transport was adopted to logistics applications in which the actual routing is treated as obligatory reference schedule to be stabilized. The intelligence aspects are related among others to HILS based decomposition, context-related trade-offs between routing modifications and corrective dispatching control capabilities e.g. priority or route guidance actions. Methods: Decomposition of the vehicle routing problem for the HILS layers tasks creating the ILS system hierarchical structure. Dedicated solution method for the VRP-SPD-TW routing problem. The recognition of the control preferences structure by AHP-Entropy methods. DISCON and PIACON multi-criteria interacting control methods. Results: Original formulation and solution of the vehicle routing problem by system-wide approach with essential practical advantages: consistency, lack of redundancy, essential reduction of dimension, dedicated formulation, multi-criteria approach, exploration of the integration and intelligence features supported by the intelligent PIACON-DISCON methods control activities Conclusions: The presented proposal creates the professional

  5. Quantum photonics hybrid integration platform

    CERN Document Server

    Murray, Eoin; Meany, Thomas; Flother, Frederick F; Lee, James P; Griffiths, Jonathan P; Jones, Geb A C; Farrer, Ian; Ritchie, David A; Bennet, Anthony J; Shields, Andrew J

    2015-01-01

    Fundamental to integrated photonic quantum computing is an on-chip method for routing and modulating quantum light emission. We demonstrate a hybrid integration platform consisting of arbitrarily designed waveguide circuits and single photon sources. InAs quantum dots (QD) embedded in GaAs are bonded to an SiON waveguide chip such that the QD emission is coupled to the waveguide mode. The waveguides are SiON core embedded in a SiO2 cladding. A tuneable Mach Zehnder modulates the emission between two output ports and can act as a path-encoded qubit preparation device. The single photon nature of the emission was veri?ed by an on-chip Hanbury Brown and Twiss measurement.

  6. Quantum photonics hybrid integration platform

    Energy Technology Data Exchange (ETDEWEB)

    Murray, E.; Floether, F. F. [Cambridge Research Laboratory, Toshiba Research Europe Limited, 208 Science Park, Milton Road, Cambridge CB4 0GZ (United Kingdom); Cavendish Laboratory, University of Cambridge, J.J. Thomson Avenue, Cambridge CB3 0HE (United Kingdom); Ellis, D. J. P.; Meany, T.; Bennett, A. J., E-mail: anthony.bennet@crl.toshiba.co.uk; Shields, A. J. [Cambridge Research Laboratory, Toshiba Research Europe Limited, 208 Science Park, Milton Road, Cambridge CB4 0GZ (United Kingdom); Lee, J. P. [Cambridge Research Laboratory, Toshiba Research Europe Limited, 208 Science Park, Milton Road, Cambridge CB4 0GZ (United Kingdom); Engineering Department, University of Cambridge, 9 J. J. Thomson Avenue, Cambridge CB3 0FA (United Kingdom); Griffiths, J. P.; Jones, G. A. C.; Farrer, I.; Ritchie, D. A. [Cavendish Laboratory, University of Cambridge, J.J. Thomson Avenue, Cambridge CB3 0HE (United Kingdom)

    2015-10-26

    Fundamental to integrated photonic quantum computing is an on-chip method for routing and modulating quantum light emission. We demonstrate a hybrid integration platform consisting of arbitrarily designed waveguide circuits and single-photon sources. InAs quantum dots (QD) embedded in GaAs are bonded to a SiON waveguide chip such that the QD emission is coupled to the waveguide mode. The waveguides are SiON core embedded in a SiO{sub 2} cladding. A tuneable Mach Zehnder interferometer (MZI) modulates the emission between two output ports and can act as a path-encoded qubit preparation device. The single-photon nature of the emission was verified using the on-chip MZI as a beamsplitter in a Hanbury Brown and Twiss measurement.

  7. Identifying And Weighting Integration Hypotheses On Open Data Platforms

    CERN Document Server

    Eberius, Julian; Thiele, Maik; Lehner, Wolfgang

    2012-01-01

    Open data platforms such as data.gov or opendata.socrata. com provide a huge amount of valuable information. Their free-for-all nature, the lack of publishing standards and the multitude of domains and authors represented on these platforms lead to new integration and standardization problems. At the same time, crowd-based data integration techniques are emerging as new way of dealing with these problems. However, these methods still require input in form of specific questions or tasks that can be passed to the crowd. This paper discusses integration problems on Open Data Platforms, and proposes a method for identifying and ranking integration hypotheses in this context. We will evaluate our findings by conducting a comprehensive evaluation using on one of the largest Open Data platforms.

  8. Material platforms for integrated quantum photonics

    CERN Document Server

    Bogdanov, Simeon; Boltasseva, Alexandra; Shalaev, Vladimir M

    2016-01-01

    On-chip integration of quantum optical systems could be a major factor enabling photonic quantum technologies. Unlike the case of electronics, where the essential device is a transistor and the dominant material is silicon, the toolbox of elementary devices required for both classical and quantum photonic integrated circuits is vast. Therefore, many material platforms are being examined to host the future quantum photonic computers and network nodes. We discuss the pros and cons of several platforms for realizing various elementary devices, compare the current degrees of integration achieved in each platform and review several composite platform approaches.

  9. Development of integrated platform for computational material design

    Energy Technology Data Exchange (ETDEWEB)

    Kiyoshi, Matsubara; Kumi, Itai; Nobutaka, Nishikawa; Akifumi, Kato [Center for Computational Science and Engineering, Fuji Research Institute Corporation (Japan); Hideaki, Koike [Advance Soft Corporation (Japan)

    2003-07-01

    The goal of our project is to design and develop a problem-solving environment (PSE) that will help computational scientists and engineers develop large complicated application software and simulate complex phenomena by using networking and parallel computing. The integrated platform, which is designed for PSE in the Japanese national project of Frontier Simulation Software for Industrial Science, is defined by supporting the entire range of problem solving activity from program formulation and data setup to numerical simulation, data management, and visualization. A special feature of our integrated platform is based on a new architecture called TASK FLOW. It integrates the computational resources such as hardware and software on the network and supports complex and large-scale simulation. This concept is applied to computational material design and the project 'comprehensive research for modeling, analysis, control, and design of large-scale complex system considering properties of human being'. Moreover this system will provide the best solution for developing large and complicated software and simulating complex and large-scaled phenomena in computational science and engineering. A prototype has already been developed and the validation and verification of an integrated platform will be scheduled by using the prototype in 2003. In the validation and verification, fluid-structure coupling analysis system for designing an industrial machine will be developed on the integrated platform. As other examples of validation and verification, integrated platform for quantum chemistry and bio-mechanical system are planned.

  10. ROHDIP: Resource Oriented Heterogeneous Data Integration Platform

    Directory of Open Access Journals (Sweden)

    Wael Shehab

    2016-09-01

    Full Text Available During the last few years, the revolution of social networks such as Facebook, Twitter, and Instagram led to a daily increasing of data that are heterogeneous in their sources, data models, and platforms. Heterogeneous data sources have many forms such as the www, deep web, relational databases systems, No-SQL database systems, hierarchal data systems, semi-structured files, in which data are usually allocated on different machines (distributed and have different data models (heterogeneous. Large-scale data integration efforts demonstrate that their most valuable contribution is implementing a data integration platform that provides a uniform access to the heterogeneous data sources, as well as the different versions of data reported by the same data source over time. Furthermore, the platform must be able to integrate data from a broad range of data authoring devices and database management systems. It also should be accessible by almost types of data querying devices to ensure globally querying the integration platform from any place on earth anytime and receiving the query result in any data format. In this paper, we create a resource oriented heterogeneous data integration platform (ROHDIP that facilitates the data integration process and implements the objectives discussed above. We use the resource oriented architecture ROA to support the uniform access by most types of data querying devices from anywhere and to improve the query response time.

  11. Architectural view model for an integration platform

    Directory of Open Access Journals (Sweden)

    Tomasz Górski

    2012-03-01

    Full Text Available The most common architectural view model is "4+1" by Philipe Kruchten. This model presents the views required for a full description of computer system architecture. By contrast, this model seems to be insufficient to describe architecture of integration platform. Definitely lacks the view of integrated business processes. In the serviceoriented approach, one of the basic elements is a contract. It should also be included in the description of the architecture. Moreover, very important are integration mechanisms and mediation flows that should be presented in the description of architecture. Hence the need for integrated services view, and manner of their integration on the enterprise service bus. Use case view should also be extended by stereotypes required for presenting functionality exposed for other computer systems. It is therefore proposed architectural view model “1+5” for an integration platform. This model has following architectural views: Integrated processes, Use Cases, Logical, Integrated Services, Contracts, Deployment. Furthermore, in article was presented new UML profile "UML Profile for Integration Flows". In the profile were placed stereotypes corresponding to integration patterns and mediation mechanisms. It is important, that UML activity diagram was extended and its special form was obtained to model mediation flows on integration platform. Thus was proposed a new UML diagram: mediation flows diagram.

  12. Emerging heterogeneous integrated photonic platforms on silicon

    Directory of Open Access Journals (Sweden)

    Fathpour Sasan

    2015-05-01

    Full Text Available Silicon photonics has been established as a mature and promising technology for optoelectronic integrated circuits, mostly based on the silicon-on-insulator (SOI waveguide platform. However, not all optical functionalities can be satisfactorily achieved merely based on silicon, in general, and on the SOI platform, in particular. Long-known shortcomings of silicon-based integrated photonics are optical absorption (in the telecommunication wavelengths and feasibility of electrically-injected lasers (at least at room temperature. More recently, high two-photon and free-carrier absorptions required at high optical intensities for third-order optical nonlinear effects, inherent lack of second-order optical nonlinearity, low extinction ratio of modulators based on the free-carrier plasma effect, and the loss of the buried oxide layer of the SOI waveguides at mid-infrared wavelengths have been recognized as other shortcomings. Accordingly, several novel waveguide platforms have been developing to address these shortcomings of the SOI platform. Most of these emerging platforms are based on heterogeneous integration of other material systems on silicon substrates, and in some cases silicon is integrated on other substrates. Germanium and its binary alloys with silicon, III–V compound semiconductors, silicon nitride, tantalum pentoxide and other high-index dielectric or glass materials, as well as lithium niobate are some of the materials heterogeneously integrated on silicon substrates. The materials are typically integrated by a variety of epitaxial growth, bonding, ion implantation and slicing, etch back, spin-on-glass or other techniques. These wide range of efforts are reviewed here holistically to stress that there is no pure silicon or even group IV photonics per se. Rather, the future of the field of integrated photonics appears to be one of heterogenization, where a variety of different materials and waveguide platforms will be used for

  13. ENTERPRISE INTEGRATION PLATFORM BASED ON SERVICE- ORIENTED ARCHITECTURE

    Institute of Scientific and Technical Information of China (English)

    MENG Xiaojun; ZHANG Xu; NING Ruxin; SONG Yu

    2008-01-01

    To achieve information integration, process integration and application integration of enterprise, an enterprise integration platform (EIP) based on service-oriented architecture (SOA) is built. The enterprise integration model depending on encapsulating the business processes as well as the enterprise applications by the neutral and standard web services is presented. The problem how to discover the existed enterprise resources and share them was resolved depending on the mechanism of publishing and discovering the services. The EIP is integrated closely with product lifecycle management (PLM) system so that the process integration as well as orchestration of the business process services is implemented by encapsulating the workflow engine of PLM system. Not only process integration and application integration, but also information integration based on the bill of material (BOM) conversion driven by process are achieved. Finally, an interpretive, qualitative case study on EIP is conducted for this research.

  14. 2009 Integrated Biorefinery Platform Review Report

    Energy Technology Data Exchange (ETDEWEB)

    Ferrell, John [Office of Energy Efficiency and Renewable Energy (EERE), Washington, DC (United States)

    2009-12-01

    This document summarizes the recommendations and evaluations provided by an independent external panel of experts at the U.S. Department of Energy Biomass Program‘s Integrated Biorefinery (IBR) platform review meeting, held on February 18–19, 2009, at the Westin National Harbor, National Harbor, Maryland.

  15. Integrated microfluidic platforms for investigating neuronal networks

    Science.gov (United States)

    Kim, Hyung Joon

    This dissertation describes the development and application of integrated microfluidics-based assay platforms to study neuronal activities in the nervous system in-vitro. The assay platforms were fabricated using soft lithography and micro/nano fabrication including microfluidics, surface patterning, and nanomaterial synthesis. The use of integrated microfluidics-based assay platform allows culturing and manipulating many types of neuronal tissues in precisely controlled microenvironment. Furthermore, they provide organized multi-cellular in-vitro model, long-term monitoring with live cell imaging, and compatibility with molecular biology techniques and electrophysiology experiment. In this dissertation, the integrated microfluidics-based assay platforms are developed for investigation of neuronal activities such as local protein synthesis, impairment of axonal transport by chemical/physical variants, growth cone path finding under chemical/physical cues, and synaptic transmission in neuronal circuit. Chapter 1 describes the motivation, objectives, and scope for developing in-vitro platform to study various neuronal activities. Chapter 2 introduces microfluidic culture platform for biochemical assay with large-scale neuronal tissues that are utilized as model system in neuroscience research. Chapter 3 focuses on the investigation of impaired axonal transport by beta-Amyloid and oxidative stress. The platform allows to control neuronal processes and to quantify mitochondrial movement in various regions of axons away from applied drugs. Chapter 4 demonstrates the development of microfluidics-based growth cone turning assay to elucidate the mechanism underlying axon guidance under soluble factors and shear flow. Using this platform, the behaviors of growth cone of mammalian neurons are verified under the gradient of inhibitory molecules and also shear flow in well-controlled manner. In Chapter 5, I combine in-vitro multicellular model with microfabricated MEA

  16. Hybrid Integrated Platforms for Silicon Photonics

    Directory of Open Access Journals (Sweden)

    John E. Bowers

    2010-03-01

    Full Text Available A review of recent progress in hybrid integrated platforms for silicon photonics is presented. Integration of III-V semiconductors onto silicon-on-insulator substrates based on two different bonding techniques is compared, one comprising only inorganic materials, the other technique using an organic bonding agent. Issues such as bonding process and mechanism, bonding strength, uniformity, wafer surface requirement, and stress distribution are studied in detail. The application in silicon photonics to realize high-performance active and passive photonic devices on low-cost silicon wafers is discussed. Hybrid integration is believed to be a promising technology in a variety of applications of silicon photonics.

  17. Communication System for CIMS Application Integration Platform

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    CIMS has seen the growth of multiple incompatible hardware architectur es, each architecture supporting several incompatible operating systems, and eac h platform operating with various incompatible development tools (e.g., programm ing language compilers, DBMS, etc.) and one or more incompatible graphic user in terfaces. Also, the growth of the Internet, the World-Wide Web, has introduced new dimensio ns of complexity into the development process. All of these must be dealt with a s the application is made workable in a distributed client-server environment. This paper outlines the architecture of a communication system for the CIMS appl ication integration platform. The communication system makes possible the reque st for service across heterogeneous platforms and networks, and provides some co mmon solutions to issues common to CIMS applications.

  18. Hybrid Photonic Integration on a Polymer Platform

    Directory of Open Access Journals (Sweden)

    Ziyang Zhang

    2015-09-01

    Full Text Available To fulfill the functionality demands from the fast developing optical networks, a hybrid integration approach allows for combining the advantages of various material platforms. We have established a polymer-based hybrid integration platform (polyboard, which provides flexible optical input/ouptut interfaces (I/Os that allow robust coupling of indium phosphide (InP-based active components, passive insertion of thin-film-based optical elements, and on-chip attachment of optical fibers. This work reviews the recent progress of our polyboard platform. On the fundamental level, multi-core waveguides and polymer/silicon nitride heterogeneous waveguides have been fabricated, broadening device design possibilities and enabling 3D photonic integration. Furthermore, 40-channel optical line terminals and compact, bi-directional optical network units have been developed as highly functional, low-cost devices for the wavelength division multiplexed passive optical network. On a larger scale, thermo-optic elements, thin-film elements and an InP gain chip have been integrated on the polyboard to realize a colorless, dual-polarization optical 90° hybrid as the frontend of a coherent receiver. For high-end applications, a wavelength tunable 100Gbaud transmitter module has been demonstrated, manifesting the joint contribution from the polyboard technology, high speed polymer electro-optic modulator, InP driver electronics and ceramic electronic interconnects.

  19. CILogon: An Integrated Identity and Access Management Platform for Science

    Science.gov (United States)

    Basney, J.

    2016-12-01

    When scientists work together, they use web sites and other software to share their ideas and data. To ensure the integrity of their work, these systems require the scientists to log in and verify that they are part of the team working on a particular science problem. Too often, the identity and access verification process is a stumbling block for the scientists. Scientific research projects are forced to invest time and effort into developing and supporting Identity and Access Management (IAM) services, distracting them from the core goals of their research collaboration. CILogon provides an IAM platform that enables scientists to work together to meet their IAM needs more effectively so they can allocate more time and effort to their core mission of scientific research. The CILogon platform enables federated identity management and collaborative organization management. Federated identity management enables researchers to use their home organization identities to access cyberinfrastructure, rather than requiring yet another username and password to log on. Collaborative organization management enables research projects to define user groups for authorization to collaboration platforms (e.g., wikis, mailing lists, and domain applications). CILogon's IAM platform serves the unique needs of research collaborations, namely the need to dynamically form collaboration groups across organizations and countries, sharing access to data, instruments, compute clusters, and other resources to enable scientific discovery. CILogon provides a software-as-a-service platform to ease integration with cyberinfrastructure, while making all software components publicly available under open source licenses to enable re-use. Figure 1 illustrates the components and interfaces of this platform. CILogon has been operational since 2010 and has been used by over 7,000 researchers from more than 170 identity providers to access cyberinfrastructure including Globus, LIGO, Open Science Grid

  20. 基于虚拟医院平台的PBL移动学习研究%Integrating problem-based learning with mobile learning on virtual hospital platform

    Institute of Scientific and Technical Information of China (English)

    王军明; 张虹; 孙旭芳; 胡维琨; 杜皓; 王玮; 陈琢

    2013-01-01

    移动学习具有移动性、及时性、网络性和虚拟性。以虚拟医院为平台,开发适用于移动设备的虚拟医院平台及移动设备选择,将学生组成学习网络,通过前期培训、临床病例筛选、学习目标的确定、学习过程和结果的评价等流程,借助移动设备开展以问题为基础的学习(problem-based learning,PBL),有利于理论联系实际,实现从“以学科为中心”的学习向“以器官系统为中心”的学习转换。%Mobile learning has the characteristics of mobility,timeliness,network and virtu-ality. We developed virtual hospital suitable for mobile devices and organized students in to a network. Through early training,clinical case screen,learning objective fix,learning process and results evaluation,mobile devices were employed to do problem-based learning,which is conducive to the integration of theory with practice,the shifting from discipline-centered to system-based courses and the improving of utilization rate of learning resource.

  1. Offshore platform integration and floatover technology

    CERN Document Server

    Liu, Gengshen

    2017-01-01

    This book discusses offshore platform integration technology, focusing on the floatover methodology and its applications. It also addresses topics related to safety and cost-effectiveness, as well as ensuring the success of a project through careful planning and established detailed operation procedure/working manuals, which are rarely found in the published literature. Unlike other publications in this area, the book not only includes details of technology development, but also presents real project cases in the discussion to make it more comprehensible. Each topic is illustrated with carefully created sketches to show the complex operation procedures. .

  2. Fully Integrated Biochip Platforms for Advanced Healthcare

    Directory of Open Access Journals (Sweden)

    Giovanni De Micheli

    2012-08-01

    Full Text Available Recent advances in microelectronics and biosensors are enabling developments of innovative biochips for advanced healthcare by providing fully integrated platforms for continuous monitoring of a large set of human disease biomarkers. Continuous monitoring of several human metabolites can be addressed by using fully integrated and minimally invasive devices located in the sub-cutis, typically in the peritoneal region. This extends the techniques of continuous monitoring of glucose currently being pursued with diabetic patients. However, several issues have to be considered in order to succeed in developing fully integrated and minimally invasive implantable devices. These innovative devices require a high-degree of integration, minimal invasive surgery, long-term biocompatibility, security and privacy in data transmission, high reliability, high reproducibility, high specificity, low detection limit and high sensitivity. Recent advances in the field have already proposed possible solutions for several of these issues. The aim of the present paper is to present a broad spectrum of recent results and to propose future directions of development in order to obtain fully implantable systems for the continuous monitoring of the human metabolism in advanced healthcare applications.

  3. Integrated platform and API for electrophysiological data

    Directory of Open Access Journals (Sweden)

    Andrey eSobolev

    2014-04-01

    Full Text Available Recent advancements in technology and methodology have led to growing amounts of increasingly complex neuroscience data recorded from various species, modalities, and levels of study. The rapid data growth has made efficient data access and flexible, machine-readable data annotation a crucial requisite for neuroscientists. Clear and consistent annotation and organization of data is not only an important ingredient for reproducibility of results and re-use of data, but also essential for collaborative research and data sharing. In particular, efficient data management and interoperability requires a unified approach that integrates data and metadata and provides a common way of accessing this information.In this paper we describe GNData, a data management platform for neurophysiological data. GNData provides a storage system based on a data representation that is suitable to organize data and metadata from any electrophysiological experiment, with a functionality exposed via a common application programming interface (API. Data representation and API structure are compatible with existing approaches for data and metadata representation in neurophysiology. The API implementation is based on the Representational State Transfer (REST pattern, which enables data access integration in software applications and facilitates the development of tools that communicate with the service. Client libraries that interact with the API provide direct data access from computing environments like Matlab or Python, enabling integration of data management into the scientist's experimental or analysis routines.

  4. Integrated platform and API for electrophysiological data.

    Science.gov (United States)

    Sobolev, Andrey; Stoewer, Adrian; Leonhardt, Aljoscha; Rautenberg, Philipp L; Kellner, Christian J; Garbers, Christian; Wachtler, Thomas

    2014-01-01

    Recent advancements in technology and methodology have led to growing amounts of increasingly complex neuroscience data recorded from various species, modalities, and levels of study. The rapid data growth has made efficient data access and flexible, machine-readable data annotation a crucial requisite for neuroscientists. Clear and consistent annotation and organization of data is not only an important ingredient for reproducibility of results and re-use of data, but also essential for collaborative research and data sharing. In particular, efficient data management and interoperability requires a unified approach that integrates data and metadata and provides a common way of accessing this information. In this paper we describe GNData, a data management platform for neurophysiological data. GNData provides a storage system based on a data representation that is suitable to organize data and metadata from any electrophysiological experiment, with a functionality exposed via a common application programming interface (API). Data representation and API structure are compatible with existing approaches for data and metadata representation in neurophysiology. The API implementation is based on the Representational State Transfer (REST) pattern, which enables data access integration in software applications and facilitates the development of tools that communicate with the service. Client libraries that interact with the API provide direct data access from computing environments like Matlab or Python, enabling integration of data management into the scientist's experimental or analysis routines.

  5. Integrated chemiresistor array for small sensor platforms

    Energy Technology Data Exchange (ETDEWEB)

    HUGHES,ROBERT C.; CASALNUOVO,STEPHEN A.; WESSENDORF,KURT O.; SAVIGNON,DANIEL J.; HIETALA,SUSAN LESLIE; PATEL,SANJAY V.

    2000-04-13

    Chemiresistors are fabricated from materials that change their electrical resistance when exposed to certain chemical species. Composites of soluble polymers with metallic particles have shown remarkable sensitivity to many volatile organic chemicals, depending on the ability of the analyte molecules to swell the polymer matrix. These sensors can be made extremely small (< 100 square microns), operate at ambient temperatures, and require almost no power to read-out. However, the chemiresistor itself is only a part of a more complex sensor system that delivers chemical information to a user who can act on the information. The authors present the design, fabrication and performance of a chemiresistor array chip with four different chemiresistor materials, heaters and a temperature sensor. They also show the design and fabrication of an integrated chemiresistor array, where the electronics to read-out the chemiresistors is on the same chip with the electrodes for the chemiresistors. The circuit was designed to perform several functions to make the sensor data more useful. This low-power, integrated chemiresistor array is small enough to be deployed on a Sandia-developed microrobot platform.

  6. SOA, SoBI & EDA - Paradigms for Integration Capabilities of BI Platform

    Directory of Open Access Journals (Sweden)

    Bogdan GHILIC-MICU

    2008-01-01

    Full Text Available A Business Intelligence (BI provider may offer a basic solution, a packed application or a comprising BI platform which integrates components from individual technologies in a synergic system. The providers’ tendency is to standardize the instruments offered on a single server platform. The article analyzes the integration capabilities and problems of BI platforms, emphasizes the differences between emergent technologies and suggests integration solutions. The analysis is useful both to the providers of BI solutions - in order to develop some agile platforms, as well as to their users - representing an important factor in selecting the solution. In addition, the conclusions to be drawn will emphasize the tendencies from the BI market and will represent the support in creating some agile platforms.

  7. Scalable Testing Platform for CMOS Read In Integrated Circuits

    Science.gov (United States)

    2016-03-31

    Distribution A Approved for Public Release – Distribution is unlimited Scalable Testing Platform for CMOS Read-In Integrated Circuits Miguel...research group. This paper describes a single scalable testing platform (STP) capable of testing all of our RIICs. This approach reduces the design...time and risk associated with RIIC testing . On the hardware side, our platform consists of several custom printed circuit boards. On the software

  8. KinomeXplorer: an integrated platform for kinome biology studies

    DEFF Research Database (Denmark)

    Horn, Heiko; Schoof, Erwin; Kim, Jinho

    2014-01-01

    A letter to the editor is presented related to the KinomeXplorer, an integrated platform providing workflows to efficiently analyze phosphorylation dependent interaction networks or kinase signaling networks....

  9. To design and construct an embedded knowledge integration service platform:Taking ISCAS subject group platform as an example

    Institute of Scientific and Technical Information of China (English)

    Yajing; LIU; Jinhui; ZHOU; Yanxi; WANG; Dan; HAO

    2014-01-01

    have showed their strong interest for our self-developed tools,among which more than 10 cooperation partnerships have been formed.Originality/value:Through self-developed service tools and the integration of multiple-type resources,our Platform has solved such key problems as timely access and update of the trusted resources from a third party,and the rapid fusion and extension of library resources while establishing subject knowledge environment.So the ISCAS library can provide a flexible customization of library services according to the need of different users.

  10. Third-party Reverse logistics platform and method Based on Bilateral Resource Integration

    Directory of Open Access Journals (Sweden)

    Zheng Hong Zhen

    2016-01-01

    Full Text Available Dispersion of reverse logistics resources makes it difficult to create relationships between demanders and providers, thereby the personalized demand for the construction of enterprise reverse logistics cannot be satisfied and the service quality cannot be guaranteed. Aiming at these problems, this paper presents a platform and method of enterprise reverse logistics based on bilateral resource integration (RLBRI. The method creates a third-party reverse logistics platform to accumulate a mass of reverse logistics demanders and providers together. And the platform integrates bilateral resources and acts as an intermediary to establish relationships between two sides. Through the platform, a complete and high-quality business chain for enterprise reverse logistics will be built efficiently. Finally put forward an effective strategy of non-defective reverse logistics depends on the integrity checking service provided by third-party logistics. By using this strategy it can short the distance of non-defective reverse transportation. Computational tests validate the strategy.

  11. Snap: An Integrated SNP Annotation Platform

    DEFF Research Database (Denmark)

    Li, S.; Ma, L.; Li, H.

    2007-01-01

    research. Using a user-friendly web interface, genes can be searched by name, description, position, SNP ID or clone name. Several public databases are integrated, including gene information from Ensembl, protein features from Uniprot/SWISS-PROT, Pfam and DAS-CBS. Gene relationships are fetched from BIND......, MINT, KEGG and are integrated with ortholog data from TreeFam to extend the current interaction networks. Integrated tools for primer-design and mis-splicing analysis have been developed to facilitate experimental analysis of individual genes with focus on their variation. Snap is available at http...

  12. A service integration platform for collaborative networks

    NARCIS (Netherlands)

    Osorio, A. L.; Afsarmanesh, H.; Camarinha-Matos, L.M.

    2011-01-01

    Integrated manufacturing constitutes a complex system made of heterogeneous information and control subsystems. Those subsystems are not designed to the cooperation. Typically each subsystem automates specific processes, and establishes closed application domains, therefore it is very difficult to i

  13. Current State and Development Trends for Integration Platforms

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    The integration platform (IP) is an advanced support tool for application softwa re development and integration. This paper analyzes the shortcomings of traditio nal software programming methods, introduces the background and development of i ntegration platforms and presents the basic functions and system architecture of computer integrated manufacture computing environment (CCE) IP as well as the i ntegration framework. Computer integrated manufacturing system (CIMS) applicatio n IP is defined i n relation to the IP requirements for CIMS implementation within a company. The CIMS application IP is not only a support tool for application software developm ent, but also a support tool for software integration and system operation. Ther efore, the behavior and functions of a CIMS application IP must also include sof tware integration and system operation. The development trend for CIMS applicati on IPs is discussed in view of software technology development trends.

  14. An integrated platform for assessing biologics (Conference Presentation)

    Science.gov (United States)

    Schein, Perry; O'Dell, Dakota; Erickson, David

    2016-04-01

    Protein therapeutics are a rapidly growing portion of the pharmaceuticals market and have many significant advantages over traditional small molecule drugs. As this market expands, however, critical regulatory and quality control issues remain, most notably the problem of protein aggregation. Individual target proteins often aggregate into larger masses which trigger an immune response in the body, which can reduce the efficacy of the drug for its intended purpose, or cause serious anaphylactic side-effects. Although detecting and minimizing aggregate formation is critical to ensure an effective product, aggregation dynamics are often highly complicated and there is little hope of reliable prediction and prevention from first principles. This problem is compounded for aggregates in the subvisible range of 100 nm to 10 micrometers where traditional techniques for detecting aggregates have significant limitations. Here, we present an integrated optofluidic platform for detecting nanoscale protein aggregates and characterizing interactions between these aggregates and a reference surface. By delivering light to a solution of proteins with an optical waveguide, scattered light from individual protein aggregates can be detected and analyzed to determine the force profile between each particle and the waveguide surface. Unlike existing methods which only determine size or charge, our label-free screening technique can directly measure the surface interaction forces between single aggregates and the glass substrate. This direct measurement capability may allow for better empirical predictions of the stability of protein aggregates during drug manufacturing and storage.

  15. A versatile, inexpensive integrated photonics platform

    CERN Document Server

    Shainline, Jeffrey M; Nader, Nima; Gentry, Cale M; Cossel, Kevin C; Popović, Miloš; Newbury, Nathan R; Nam, Sae Woo; Mirin, Richard P

    2016-01-01

    We present an approach to fabrication and packaging of integrated photonic devices that utilizes waveguide and detector layers deposited at near-ambient temperature. All lithography is performed with a 365 nm i-line stepper, facilitating low cost and high scalability. We have shown low-loss SiN waveguides, high-$Q$ ring resonators, critically coupled ring resonators, 50/50 beam splitters, Mach-Zehnder interferometers (MZIs) and a process-agnostic fiber packaging scheme. We have further explored the utility of this process for applications in nonlinear optics and quantum photonics. We demonstrate spectral tailoring and octave-spanning supercontinuum generation as well as the integration of superconducting nanowire single photon detectors with MZIs and channel-dropping filters. The packaging approach is suitable for operation up to 160 \\degree C as well as below 1 K. The process is well suited for augmentation of existing foundry capabilities or as a stand-alone process.

  16. Platforms for integrated nonlinear optics compatible with silicon integrated circuits

    CERN Document Server

    Moss, David J

    2014-01-01

    Nonlinear photonic chips are capable of generating and processing signals all-optically with performance far superior to that possible electronically - particularly with respect to speed. Although silicon has been the leading platform for nonlinear optics, its high two-photon absorption at telecommunications wavelengths poses a fundamental limitation. We review recent progress in CMOS-compatible platforms for nonlinear optics, focusing on Hydex glass and silicon nitride and briefly discuss the promising new platform of amorphous silicon. These material systems have opened up many new capabilities such as on-chip optical frequency comb generation, ultrafast optical pulse generation and measurement. We highlight their potential future impact as well as the challenges to achieving practical solutions for many key applications.

  17. Photovoltaic System Test Platform with Integrated Battery Energy Storage Emulator

    DEFF Research Database (Denmark)

    Spataru, Sergiu; Sera, Dezso; Stroe, Daniel-Ioan

    2017-01-01

    In this work, we present a hybrid simulation and a real-time test platform for developing control systems for photovoltaic (PV) inverters with integrated battery energy storage (BES). The platform consists of a dual-stage single-phase PV inverter system, DC coupled with a full-bridge grid connected...... inverter, which emulates the charge regulator and battery bank. The real-time control of the two power electronic converters is implemented in a Simulink/dSpace platform, together with the real-time simulation model of the battery pack, whereas the PV array input can be connected to a PV emulator...... or directly to a physical PV array. The platform enables real-time testing of PV+BES control systems, including battery (BMS) and energy management systems (EMS), for a variety of battery technologies, which can be modelled in detail and emulated by the full-bridge grid connected inverter. Such flexibility...

  18. Aneka Cloud Application Platform and Its Integration with Windows Azure

    CERN Document Server

    Wei, Yi; Vecchiola, Christian; Karunamoorthy, Dileban; Buyya, Rajkumar

    2011-01-01

    Aneka is an Application Platform-as-a-Service (Aneka PaaS) for Cloud Computing. It acts as a framework for building customized applications and deploying them on either public or private Clouds. One of the key features of Aneka is its support for provisioning resources on different public Cloud providers such as Amazon EC2, Windows Azure and GoGrid. In this chapter, we will present Aneka platform and its integration with one of the public Cloud infrastructures, Windows Azure, which enables the usage of Windows Azure Compute Service as a resource provider of Aneka PaaS. The integration of the two platforms will allow users to leverage the power of Windows Azure Platform for Aneka Cloud Computing, employing a large number of compute instances to run their applications in parallel. Furthermore, customers of the Windows Azure platform can benefit from the integration with Aneka PaaS by embracing the advanced features of Aneka in terms of multiple programming models, scheduling and management services, application...

  19. Fundamentals of power integrity for computer platforms and systems

    CERN Document Server

    DiBene, Joseph T

    2014-01-01

    An all-encompassing text that focuses on the fundamentals of power integrity Power integrity is the study of power distribution from the source to the load and the system level issues that can occur across it. For computer systems, these issues can range from inside the silicon to across the board and may egress into other parts of the platform, including thermal, EMI, and mechanical. With a focus on computer systems and silicon level power delivery, this book sheds light on the fundamentals of power integrity, utilizing the author's extensive background in the power integrity industry and un

  20. Analysis and Application for Integrity Model on Trusted Platform

    Institute of Scientific and Technical Information of China (English)

    TU Guo-qing; ZHANG Huan-guo; WANG Li-na; YU Dan-dan

    2005-01-01

    To build a trusted platform based on Trusted Computing Platform Alliance (TCPA) ' s recommendation,we analyze the integrity mechanism for such a PC platform in this paper. By combinning access control model with information flow model, we put forward a combined process-based lattice model to enforce security. This model creates a trust chain by which we can manage a series of processes from a core root of trust module to some other application modules.In the model, once the trust chain is created and managed correctly,the integrity of the computer's hardware and sofware has been mainfained, so does the confidentiality and authenticity. Moreover, a relevant implementation of the model is explained.

  1. Biomass Program 2007 Peer Review - Integrated Biorefinery Platform Summary

    Energy Technology Data Exchange (ETDEWEB)

    none,

    2009-10-27

    This document discloses the comments provided by a review panel at the U.S. Department of Energy Office of the Biomass Program Peer Review held on November 15-16, 2007 in Baltimore, MD and the Integrated Biorefinery Platform Review held on August 13-15, 2007 in Golden, Colorado.

  2. a Workflow for UAV's Integration Into a Geodesign Platform

    Science.gov (United States)

    Anca, P.; Calugaru, A.; Alixandroae, I.; Nazarie, R.

    2016-06-01

    This paper presents a workflow for the development of various Geodesign scenarios. The subject is important in the context of identifying patterns and designing solutions for a Smart City with optimized public transportation, efficient buildings, efficient utilities, recreational facilities a.s.o.. The workflow describes the procedures starting with acquiring data in the field, data processing, orthophoto generation, DTM generation, integration into a GIS platform and analyzing for a better support for Geodesign. Esri's City Engine is used mostly for 3D modeling capabilities that enable the user to obtain 3D realistic models. The workflow uses as inputs information extracted from images acquired using UAVs technologies, namely eBee, existing 2D GIS geodatabases, and a set of CGA rules. The method that we used further, is called procedural modeling, and uses rules in order to extrude buildings, the street network, parcel zoning and side details, based on the initial attributes from the geodatabase. The resulted products are various scenarios for redesigning, for analyzing new exploitation sites. Finally, these scenarios can be published as interactive web scenes for internal, groups or pubic consultation. In this way, problems like the impact of new constructions being build, re-arranging green spaces or changing routes for public transportation, etc. are revealed through impact and visibility analysis or shadowing analysis and are brought to the citizen's attention. This leads to better decisions.

  3. Problems with Interagency Integration in Contemporary Operations

    Science.gov (United States)

    2014-12-04

    Problems with Interagency Integration in Contemporary Operations A Monograph by MAJ Raymond A. Maszarose U.S. Army School of Advanced...with Interagency Integration in Contemporary Operations 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT NUMBER...MAJ Raymond A. Maszarose Monograph Title: Problems with Interagency Integration in Contemporary Operations Approved by

  4. Health Knowledge Effects: An Integrated Community Health Promotion Platform.

    Science.gov (United States)

    Chang, I-Chiu; Lin, Chih-Yu; Tseng, Hsiao-Ting; Ho, Wen-Yu

    2016-03-01

    The Taiwanese government subsidizes healthcare providers offering preventive medicine to patients to help reduce the threats of chronic sickness and halt skyrocketing medical expenditures. Usually, nurses are the primary workers who perform community health promotion; however, because of the chronic shortage of working nurses, many Taiwan hospitals have closed wards and deferred the responsibility of promoting primary prevention. With a community health promotion platform integrating interactive response features and Web sites for community patients and hospital staff, a case hospital efficiently sustained the community health services. The objective of this study was to assess the impact of the integrated community health promotion platform for conducting education. Fifty-four patients/residents were invited to join a quasi-experiment of health education, and a follow-up survey was conducted to assess the acceptance of the community health promotion platform from both the experimental group of learners/users and the hospital staff. The results showed that the community health promotion platform was effective in improving participant health awareness. The experimental group outperformed the control group, with higher posttest scores and longer knowledge retention. Furthermore, users indicated a high acceptance of the community health promotion platform.

  5. The Implementation of an Enterprise Application Integration Platform

    Institute of Scientific and Technical Information of China (English)

    XUJungang; WANGHongan; DAIGuozhong

    2004-01-01

    With the driving of rapid reaction to the changes of business rules, enterprises realize that they need to transfer their applications from single function to management of the whole processing flow. This transfer requires the enterprises to integrate the existing individual systems and re-configure its business systems. To meet this challenge, we have designed and implemented an Application integration platform for process industry (AIP/PI),which is model-driven and component-based, and composed of six main components: application configuration and execution platform, data accessing middleware, data collecting middleware, enterprise core database for production management, enterprise real-time database for production process, data integration and material balancing system. Our work has been applied to one refinery plant.

  6. Lasers in InP generic photonic integration technology platforms

    Science.gov (United States)

    Latkowski, Sylwester; Lenstra, Daan

    2015-04-01

    A review is given of a number of lasers in a form of photonic integrated circuits realized on InP substrate using a generic integration approach. The potential of these photonic circuits lies in their compactness, low power consumption, and significant reduction of fabrication cost by realization in generic foundry runs. Generic integration platforms offer the possibility of realizing functionally advanced photonic circuits using combinations of just a few standardized and parameterized building blocks. This vibrant field opens new doors to innovative product development for SMEs as well as curiosity-driven research.

  7. Integration of approaches in David Wake's model-taxon research platform for evolutionary morphology.

    Science.gov (United States)

    Griesemer, James

    2013-12-01

    What gets integrated in integrative scientific practices has been a topic of much discussion. Traditional views focus on theories and explanations, with ideas of reduction and unification dominating the conversation. More recent ideas focus on disciplines, fields, or specialties; models, mechanisms, or methods; phenomena, problems. How integration works looks different on each of these views since the objects of integration are ontologically and epistemically various: statements, boundary conditions, practices, protocols, methods, variables, parameters, domains, laboratories, and questions all have their own structures, functions and logics. I focus on one particular kind of scientific practice, integration of "approaches" in the context of a research system operating on a special kind of "platform." Rather than trace a network of interactions among people, practices, and theoretical entities to be integrated, in this essay I focus on the work of a single investigator, David Wake. I describe Wake's practice of integrative evolutionary biology and how his integration of approaches among biological specialties worked in tandem with his development of the salamanders as a model taxon, which he used as a platform to solve, re-work and update problems that would not have been solved so well by non-integrative approaches. The larger goal of the project to which this paper contributes is a counter-narrative to the story of 20th century life sciences as the rise and march of the model organisms and decline of natural history.

  8. Software for systems biology: from tools to integrated platforms.

    Science.gov (United States)

    Ghosh, Samik; Matsuoka, Yukiko; Asai, Yoshiyuki; Hsin, Kun-Yi; Kitano, Hiroaki

    2011-11-03

    Understanding complex biological systems requires extensive support from software tools. Such tools are needed at each step of a systems biology computational workflow, which typically consists of data handling, network inference, deep curation, dynamical simulation and model analysis. In addition, there are now efforts to develop integrated software platforms, so that tools that are used at different stages of the workflow and by different researchers can easily be used together. This Review describes the types of software tools that are required at different stages of systems biology research and the current options that are available for systems biology researchers. We also discuss the challenges and prospects for modelling the effects of genetic changes on physiology and the concept of an integrated platform.

  9. Wolfram technologies as an integrated scalable platform for interactive learning

    Science.gov (United States)

    Kaurov, Vitaliy

    2012-02-01

    We rely on technology profoundly with the prospect of even greater integration in the future. Well known challenges in education are a technology-inadequate curriculum and many software platforms that are difficult to scale or interconnect. We'll review an integrated technology, much of it free, that addresses these issues for individuals and small schools as well as for universities. Topics include: Mathematica, a programming environment that offers a diverse range of functionality; natural language programming for getting started quickly and accessing data from Wolfram|Alpha; quick and easy construction of interactive courseware and scientific applications; partnering with publishers to create interactive e-textbooks; course assistant apps for mobile platforms; the computable document format (CDF); teacher-student and student-student collaboration on interactive projects and web publishing at the Wolfram Demonstrations site.

  10. From NHS Choices to the integrated customer service platform.

    Science.gov (United States)

    Gann, Bob; Grant, Maria J

    2013-03-01

    In 2013 the NHS Commissioning Board launches its new integrated customer service platform. The new service utilises the full range of channels (web, telephone, apps etc) to provide access to information to support transparency, participation and transactions. Digital health services have proven benefits in informed choice, shared decision making and patient participation. © 2013 The authors. Health Information and Libraries Journal © 2013 Health Libraries Group.

  11. Unified Electronic Currency Based on the Fourth Party Platform Integrated Payment Service

    Science.gov (United States)

    Yong, Xu; Qiqi, Hu

    This paper presents a solution of unified e-currency based on the fourth party platform integrated payment service. The purpose of the paper is to solve the problem of distribution and resource-wasting caused by the lack of unified electronic currency, and to solve regulatory difficulties due to regulation size caused by a wide variety of e-currency. Methods: This article first analyzes the problems in the development of electronic money, and then proposes the concept of a unified electronic currency based on the fourth party platform integrated payment service. Besides, it proposes a unified mechanism and transaction procedures for unified e-currency, and analyzes the liquidation process, security and regulatory requirements, which are involved in using unified electronic currency.

  12. Efficient Sensor Integration on Platforms (NeXOS)

    Science.gov (United States)

    Memè, S.; Delory, E.; Del Rio, J.; Jirka, S.; Toma, D. M.; Martinez, E.; Frommhold, L.; Barrera, C.; Pearlman, J.

    2016-12-01

    In-situ ocean observing platforms provide power and information transmission capability to sensors. Ocean observing platforms can be mobile, such as ships, autonomous underwater vehicles, drifters and profilers, or fixed, such as buoys, moorings and cabled observatories. The process of integrating sensors on platforms can imply substantial engineering time and resources. Constraints range from stringent mechanical constraints to proprietary communication and control firmware. In NeXOS, the implementation of a PUCK plug and play capability is being done with applications to multiple sensors and platforms. This is complemented with a sensor web enablement that addresses the flow of information from sensor to user. Open standards are being tested in order to assess their costs and benefits in existing and future observing systems. Part of the testing implied open-source coding and hardware prototyping of specific control devices in particular for closed commercial platforms where firmware upgrading is not straightforward or possible without prior agreements or service fees. Some platform manufacturers such as European companies ALSEAMAR[1] and NKE Instruments [2] are currently upgrading their control and communication firmware as part of their activities in NeXOS. The sensor development companies Sensorlab[3] SMID[4] and TRIOS [5]upgraded their firmware with this plug and play functionality. Other industrial players in Europe and the US have been sent NeXOS sensors emulators to test the new protocol on their platforms. We are currently demonstrating that with little effort, it is also possible to have such middleware implemented on very low-cost compact computers such as the open Raspberry Pi[6], and have a full end-to-end interoperable communication path from sensor to user with sensor plug and play capability. The result is an increase in sensor integration cost-efficiency and the demonstration will be used to highlight the benefit to users and ocean observatory

  13. REopt: A Platform for Energy System Integration and Optimization: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Simpkins, T.; Cutler, D.; Anderson, K.; Olis, D.; Elgqvist, E.; Callahan, M.; Walker, A.

    2014-08-01

    REopt is NREL's energy planning platform offering concurrent, multi-technology integration and optimization capabilities to help clients meet their cost savings and energy performance goals. The REopt platform provides techno-economic decision-support analysis throughout the energy planning process, from agency-level screening and macro planning to project development to energy asset operation. REopt employs an integrated approach to optimizing a site?s energy costs by considering electricity and thermal consumption, resource availability, complex tariff structures including time-of-use, demand and sell-back rates, incentives, net-metering, and interconnection limits. Formulated as a mixed integer linear program, REopt recommends an optimally-sized mix of conventional and renewable energy, and energy storage technologies; estimates the net present value associated with implementing those technologies; and provides the cost-optimal dispatch strategy for operating them at maximum economic efficiency. The REopt platform can be customized to address a variety of energy optimization scenarios including policy, microgrid, and operational energy applications. This paper presents the REopt techno-economic model along with two examples of recently completed analysis projects.

  14. PROBLEM WITH INTEGRAL BOUNDARY CONDITIONS INVOLVING PETTIS INTEGRAL

    Institute of Scientific and Technical Information of China (English)

    Hussein A.H. Salem

    2011-01-01

    In this article, we investigate the existence of Pseudo solutions for some frac- tional order boundary value problem with integral boundary conditions in the Banach space of continuous function equipped with its weak topology. The class of such problems constitute a very interesting and important class of problems. They include two, three, multi-point and nonlocal boundary-value problems as special cases. In our investigation, the right hand side of the above problem is assumed to be Pettis integrable function. To encompass the full scope of this article, we give an example illustrating the main result.

  15. Toward an integrated software platform for systems pharmacology.

    Science.gov (United States)

    Ghosh, Samik; Matsuoka, Yukiko; Asai, Yoshiyuki; Hsin, Kun-Yi; Kitano, Hiroaki

    2013-12-01

    Understanding complex biological systems requires the extensive support of computational tools. This is particularly true for systems pharmacology, which aims to understand the action of drugs and their interactions in a systems context. Computational models play an important role as they can be viewed as an explicit representation of biological hypotheses to be tested. A series of software and data resources are used for model development, verification and exploration of the possible behaviors of biological systems using the model that may not be possible or not cost effective by experiments. Software platforms play a dominant role in creativity and productivity support and have transformed many industries, techniques that can be applied to biology as well. Establishing an integrated software platform will be the next important step in the field.

  16. Design of the Hospital Integrated Information Management System Based on Cloud Platform.

    Science.gov (United States)

    Aijing, L; Jin, Y

    2016-04-18

    At present, the outdated information management style cannot meet the needs of hospital management, and has become the bottleneck of hospital's management and development. In order to improve the integrated management of information, hospitals have increased their investment in integrated information management systems. On account of the lack of reasonable and scientific design, some hospital integrated information management systems have common problems, such as unfriendly interface, poor portability and maintainability, low security and efficiency, lack of interactivity and information sharing. To solve the problem, this paper carries out the research and design of a hospital information management system based on cloud platform, which can realize the optimized integration of hospital information resources and save money.

  17. Design of the Hospital Integrated Information Management System Based on Cloud Platform

    Science.gov (United States)

    Aijing, L; Jin, Y

    2015-01-01

    ABSTRACT At present, the outdated information management style cannot meet the needs of hospital management, and has become the bottleneck of hospital's management and development. In order to improve the integrated management of information, hospitals have increased their investment in integrated information management systems. On account of the lack of reasonable and scientific design, some hospital integrated information management systems have common problems, such as unfriendly interface, poor portability and maintainability, low security and efficiency, lack of interactivity and information sharing. To solve the problem, this paper carries out the research and design of a hospital information management system based on cloud platform, which can realize the optimized integration of hospital information resources and save money. PMID:27399033

  18. Bioclipse 2: A scriptable integration platform for the life sciences

    Directory of Open Access Journals (Sweden)

    Wagener Johannes

    2009-12-01

    Full Text Available Abstract Background Contemporary biological research integrates neighboring scientific domains to answer complex questions in fields such as systems biology and drug discovery. This calls for tools that are intuitive to use, yet flexible to adapt to new tasks. Results Bioclipse is a free, open source workbench with advanced features for the life sciences. Version 2.0 constitutes a complete rewrite of Bioclipse, and delivers a stable, scalable integration platform for developers and an intuitive workbench for end users. All functionality is available both from the graphical user interface and from a built-in novel domain-specific language, supporting the scientist in interdisciplinary research and reproducible analyses through advanced visualization of the inputs and the results. New components for Bioclipse 2 include a rewritten editor for chemical structures, a table for multiple molecules that supports gigabyte-sized files, as well as a graphical editor for sequences and alignments. Conclusion Bioclipse 2 is equipped with advanced tools required to carry out complex analysis in the fields of bio- and cheminformatics. Developed as a Rich Client based on Eclipse, Bioclipse 2 leverages on today's powerful desktop computers for providing a responsive user interface, but also takes full advantage of the Web and networked (Web/Cloud services for more demanding calculations or retrieval of data. The fact that Bioclipse 2 is based on an advanced and widely used service platform ensures wide extensibility, making it easy to add new algorithms, visualizations, as well as scripting commands. The intuitive tools for end users and the extensible architecture make Bioclipse 2 ideal for interdisciplinary and integrative research. Bioclipse 2 is released under the Eclipse Public License (EPL, a flexible open source license that allows additional plugins to be of any license. Bioclipse 2 is implemented in Java and supported on all major platforms; Source code

  19. Integration of fractal biosensor in a digital microfluidic platform

    KAUST Repository

    Mashraei, Yousof

    2015-11-01

    Fractal capacitive electrodes have been successfully integrated into a digital microfluidic open-platform. These electrodes perform actuation and withstand voltages up to 300V without insulation-layer breakdown. They were used to quantify the concentration levels of C-reactive protein (CRP) to determine the risk of cardiovascular disease. The capacitance increased sevenfold and stabilized in less than 5 minutes. The sensor shows a decreasing trend of capacitance readouts with the increase of concentrations. The same immunoassay was tested with untreated electrodes and showed no significant response, which suggests that immobilization was necessary. This configuration allows the electrodes to be used as biosensors.

  20. MeDICi: An Open Platform for Sensor Integration

    Energy Technology Data Exchange (ETDEWEB)

    Wynne, Adam S.; Gorton, Ian; Chase, Jared M.; Stephan, Eric G.

    2009-09-04

    MeDICi (Middleware for Data Intensive Computing) is a platform for developing high performance, distributed streaming analytic and scientific applications. Developed at Pacific Northwest National Laboratory (PNNL), MeDICi has been released under an open source license and is based on enterprise-proven middleware technologies including a widely used Enterprise Service Bus (ESB), the standard Business Process Execution Language (BPEL), and open source message brokers. Wherever possible, we have built on existing open source, standards-based systems and integrated them into a coherent whole by creating simplified graphical programming tools such as a Workflow Designer and an easy to use and well-documented integration API. This software development approach allows us to: avoid re-creating complex service integration and orchestration systems, reap the benefits of continual improvements to the technology base, and focus on creating tools and APIs which allow for the creation of re-usable component-based software components applications and workflows. These aspects have facilitated rapid adoption of the platform within PNNL for demonstration and operational applications. In fact, MeDICi has been used for a wide range of integration projects including two sensor integration applications described later on in this paper. The remainder of this article white paper is organized as follows: Section 2 provides a high-level description of the MeDICi architecture. In Section 3, the open aspects of the API and tool development are highlighted. Section 4 explains system readiness by presenting relevant demonstrations and deployments. Finally documentation and licensing details are provided in Section 5

  1. Integrative set enrichment testing for multiple omics platforms

    Directory of Open Access Journals (Sweden)

    Poisson Laila M

    2011-11-01

    Full Text Available Abstract Background Enrichment testing assesses the overall evidence of differential expression behavior of the elements within a defined set. When we have measured many molecular aspects, e.g. gene expression, metabolites, proteins, it is desirable to assess their differential tendencies jointly across platforms using an integrated set enrichment test. In this work we explore the properties of several methods for performing a combined enrichment test using gene expression and metabolomics as the motivating platforms. Results Using two simulation models we explored the properties of several enrichment methods including two novel methods: the logistic regression 2-degree of freedom Wald test and the 2-dimensional permutation p-value for the sum-of-squared statistics test. In relation to their univariate counterparts we find that the joint tests can improve our ability to detect results that are marginal univariately. We also find that joint tests improve the ranking of associated pathways compared to their univariate counterparts. However, there is a risk of Type I error inflation with some methods and self-contained methods lose specificity when the sets are not representative of underlying association. Conclusions In this work we show that consideration of data from multiple platforms, in conjunction with summarization via a priori pathway information, leads to increased power in detection of genomic associations with phenotypes.

  2. Lightweight Integrated Optical Sensor for Atmospheric Measurements on Mobile Platforms

    Energy Technology Data Exchange (ETDEWEB)

    Parameswaran, Krishnan R. [Physical Sciences Inc.

    2013-12-02

    The goal of the Phase I program was to develop a novel open path sensor platform technology based on integration of semiconductor waveguides with efficient optoelectronic components on a monolithic platform. The successful Phase I effort resulted in demonstration of a novel optical resonator structure based on semiconductor high contrast gratings (HCGs) that will enable implementation of an ultra-compact, low-power gas sensor suitable for use on mobile platforms. Extensive numerical modeling was performed to design a device optimized for measuring CO2 at a wavelength for which a laser was available for proof of concept. Devices were fabricated and tested to match the target wavelength, angle, and operating temperature. This demonstration is the first implementation of HCGs at the wavelengths of interest and shows the flexibility of the proposed architecture for gas sensing applications. The measured cavity Q was lower than anticipated due to fabrication process challenges. The PSI and UC Berkeley team has identified solutions to these challenges and will produce optimized devices in a Phase II program where a prototype sensor will be fabricated and tested.

  3. Boundary Value Problems With Integral Conditions

    Science.gov (United States)

    Karandzhulov, L. I.; Sirakova, N. D.

    2011-12-01

    The weakly perturbed nonlinear boundary value problems (BVP) for almost linear systems of ordinary differential equations (ODE) are considered. We assume that the nonlinear part contain an additional function, which defines the perturbation as singular. Then the Poincare method is not applicable. The problem of existence, uniqueness and construction of a solution of the posed BVP with integral condition is studied.

  4. S-Genius, a universal software platform with versatile inverse problem resolution for scatterometry

    Science.gov (United States)

    Fuard, David; Troscompt, Nicolas; El Kalyoubi, Ismael; Soulan, Sébastien; Besacier, Maxime

    2013-05-01

    S-Genius is a new universal scatterometry platform, which gathers all the LTM-CNRS know-how regarding the rigorous electromagnetic computation and several inverse problem solver solutions. This software platform is built to be a userfriendly, light, swift, accurate, user-oriented scatterometry tool, compatible with any ellipsometric measurements to fit and any types of pattern. It aims to combine a set of inverse problem solver capabilities — via adapted Levenberg- Marquard optimization, Kriging, Neural Network solutions — that greatly improve the reliability and the velocity of the solution determination. Furthermore, as the model solution is mainly vulnerable to materials optical properties, S-Genius may be coupled with an innovative material refractive indices determination. This paper will a little bit more focuses on the modified Levenberg-Marquardt optimization, one of the indirect method solver built up in parallel with the total SGenius software coding by yours truly. This modified Levenberg-Marquardt optimization corresponds to a Newton algorithm with an adapted damping parameter regarding the definition domains of the optimized parameters. Currently, S-Genius is technically ready for scientific collaboration, python-powered, multi-platform (windows/linux/macOS), multi-core, ready for 2D- (infinite features along the direction perpendicular to the incident plane), conical, and 3D-features computation, compatible with all kinds of input data from any possible ellipsometers (angle or wavelength resolved) or reflectometers, and widely used in our laboratory for resist trimming studies, etching features characterization (such as complex stack) or nano-imprint lithography measurements for instance. The work about kriging solver, neural network solver and material refractive indices determination is done (or about to) by other LTM members and about to be integrated on S-Genius platform.

  5. Photonic Integration on the Hybrid Silicon Evanescent Device Platform

    Directory of Open Access Journals (Sweden)

    Hyundai Park

    2008-01-01

    Full Text Available This paper reviews the recent progress of hybrid silicon evanescent devices. The hybrid silicon evanescent device structure consists of III-V epitaxial layers transferred to silicon waveguides through a low-temperature wafer bonding process to achieve optical gain, absorption, and modulation efficiently on a silicon photonics platform. The low-temperature wafer bonding process enables fusion of two different material systems without degradation of material quality and is scalable to wafer-level bonding. Lasers, amplifiers, photodetectors, and modulators have been demonstrated with this hybrid structure and integration of these individual components for improved optical functionality is also presented. This approach provides a unique way to build photonic active devices on silicon and should allow application of silicon photonic integrated circuits to optical telecommunication and optical interconnects.

  6. Integration of Fractal Biosensor in a Digital Microfluidic Platform

    KAUST Repository

    Mashraei, Yousof

    2016-06-08

    The digital microfluidic (DMF) platform introduces many applications in biomedical assays. If it is to be commercially available to the public, it needs to have the essential features of smart sensing and a compact size. In this work, we report on a fractal electrode biosensor that is used for both droplet actuation and sensing C-reactive protein (CRP) concentration levels to assess cardiac disease risk. Our proposed electrode is the first two-terminal electrode design to be integrated into DMF platforms. A simulation of the electrical field distribution shows reduced peak intensities and uniform distribution of the field. When compared to a V-notch square electrode, the fractal electrode shows a superior performance in both aspects, i.e. field uniformity and intensity. These improvements are translated into a successful and responsive actuation of a water droplet with 100V. Likewise, the effective dielectric strength is improved by a 33% increase in the fractal electrode breakdown voltage. Additionally, the capability of the fractal electrode to work as a capacitive biosensor is evaluated with CRP quantification test. Selected fractal electrodes undergo a surface treatment to immobilize anti-CRP antibodies on their surface. The measurement shows a response to the added CRP in capacitance within three minutes. When the untreated electrodes were used for quantification, there was no significant change in capacitance, and this suggested that immobilization was necessary. The electrodes configuration in the fabricated DMF platform allows the fractal electrodes to be selectively used as biosensors, which means the device could be integrated into point-of-care applications.

  7. Research on the positioning problem in HIFU surgery platform application

    Institute of Scientific and Technical Information of China (English)

    XIANG Lin-qing; GAO Xue-guan; XU Jian-bo; MA Pei-sun

    2006-01-01

    For describing the positioning process of High Intensity Focused Ultrasound (HIFU) Surgery Platform in the application in tumor treatment, a simplified representation of the shape and location of the positioning target tumor in the workspace of the platform by the Positioning Volume Ellipsoid is designed; and the Nearest Neighbor Search method is used to find the closest center point of the simplified ellipsoid tumor model in a selected patient body surface point set determined by the motion parameter of the platform. By the query result the goal positioning path configuration and an intermediate positioning path configuration for the positioning motion are determined for the positioning motion planning. Three new criterions using distance change between Positioning Volume Ellipsoid and the Ultrasound Focus Ellipsoid are proposed to evaluate the result of the whole positioning procedure.

  8. Modeling and simulation of integrated luminescence detection platforms

    Science.gov (United States)

    Salama, Khaled; Eltoukhy, Helmy; Hassibi, Arjang; El Gamal, Abbas

    2003-07-01

    We developed a simulation model of an integrated CMOS-based imaging platform for use with bioluminescent DNA microarrays. We formulate the complete kinetic model of ATP based assays and luciferase label-based assays. The model first calculates the number of photons generated per unit time, i.e., photon flux, based upon the kinetics of the light generation process of luminescence probes. The photon flux coupled with the system geometry is then used to calculate the number of photons incident on the photodetector plane. Subsequently the characteristics of the imaging array including the photodetector spectral response, its dark current density, and the sensor conversion gain are incorporated. The model also takes into account different noise sources including shot noise, reset noise, readout noise and fixed pattern noise. Finally, signal processing algorithms are applied to the image to enhance detection reliability and hence increase the overall system throughput. We will present simulations and preliminary experimental results.

  9. TECHNOLOGY SUPPORTED LEARNING PLATFORM: Moodle Integrated Academic Course

    Directory of Open Access Journals (Sweden)

    Saziye YAMAN

    2010-04-01

    Full Text Available It is substantially accepted that constructivism proposes knowledge as “not a fixed object”; constructed by an individual through her own experiences. As a learning theory, constructivism in education emphasizes collaborative learning, such as authentic challenging projects involving in students, teachers and experts in the learning community. Its goal is to create learning communities that are more closely related to the collaborative practice of the real world as strongly reflected in social constructivist idea. The technologies used in the filed of education will support learning through collaborative practices, using learners’ experiences for “meaning making”. The challenge now is to extend the educational networks so that it offers access to learning resources, online storage and tools for communication and management not just within the limitation of school and time. Through learning platforms, such as Moodle, teachers and administrators may bring hardware, software and supporting services together to enable more effective conditions among teachers and students. In this study, Moodle was used to support the 4th grade pre-service language teachers’ (student teachers one of the academic courses, named as “Field Experience”. The student teachers were expected to prepare graduation theses in the field of English language teaching. Moodle was integrated as a technological learning aid and used as online support throughout a semester course. So, we will discuss how Moodle was integrated as a learning platform, while discussing, the use of Moodle as a “course supporter” process, steps and the sample activities will be presented as well.

  10. Turbine blade and non-integral platform with pin attachment

    Energy Technology Data Exchange (ETDEWEB)

    Campbell, Christian Xavier; Eng, Darryl; Marra, John J.

    2016-08-02

    Platforms (36, 38) span between turbine blades (23, 24, 25) on a disk (32). Each platform may be individually mounted to the disk by a pin attachment (42). Each platform (36) may have a rotationally rearward edge portion (50) that underlies a forward portion (45) of the adjacent platform (38). This limits centrifugal bending of the rearward portion of the platform, and provides coolant sealing. The rotationally forward edge (44A, 44B) of the platform overlies a seal element (51) on the pressure side (28) of the forwardly adjacent blade, and does not underlie a shelf on that blade. The pin attachment allows radial mounting of each platform onto the disk via tilting (60) of the platform during mounting to provide mounting clearance for the rotationally rearward edge portion (50). This facilitates quick platform replacement without blade removal.

  11. Turbine blade and non-integral platform with pin attachment

    Science.gov (United States)

    Campbell, Christian X; Eng, Darryl; Marra, John J

    2015-01-27

    Platforms (36, 38) span between turbine blades (23, 24, 25) on a disk (32). Each platform may be individually mounted to the disk by a pin attachment (42). Each platform (36) may have a rotationally rearward edge portion (50) that underlies a forward portion (45) of the adjacent platform (38). This limits centrifugal bending of the rearward portion of the platform, and provides coolant sealing. The rotationally forward edge (44A, 44B) of the platform overlies a seal element (51) on the pressure side (28) of the forwardly adjacent blade, and does not underlie a shelf on that blade. The pin attachment allows radial mounting of each platform onto the disk via tilting (60) of the platform during mounting to provide mounting clearance for the rotationally rearward edge portion (50). This facilitates quick platform replacement without blade removal.

  12. Integrated Production-Distribution Scheduling Problem with Multiple Independent Manufacturers

    Directory of Open Access Journals (Sweden)

    Jianhong Hao

    2015-01-01

    Full Text Available We consider the nonstandard parts supply chain with a public service platform for machinery integration in China. The platform assigns orders placed by a machinery enterprise to multiple independent manufacturers who produce nonstandard parts and makes production schedule and batch delivery schedule for each manufacturer in a coordinate manner. Each manufacturer has only one plant with parallel machines and is located at a location far away from other manufacturers. Orders are first processed at the plants and then directly shipped from the plants to the enterprise in order to be finished before a given deadline. We study the above integrated production-distribution scheduling problem with multiple manufacturers to maximize a weight sum of the profit of each manufacturer under the constraints that all orders are finished before the deadline and the profit of each manufacturer is not negative. According to the optimal condition analysis, we formulate the problem as a mixed integer programming model and use CPLEX to solve it.

  13. Drive to miniaturization: integrated optical networks on mobile platforms

    Science.gov (United States)

    Salour, Michael M.; Batayneh, Marwan; Figueroa, Luis

    2011-11-01

    With rapid growth of the Internet, bandwidth demand for data traffic is continuing to explode. In addition, emerging and future applications are becoming more and more network centric. With the proliferation of data communication platforms and data-intensive applications (e.g. cloud computing), high-bandwidth materials such as video clips dominating the Internet, and social networking tools, a networking technology is very desirable which can scale the Internet's capability (particularly its bandwidth) by two to three orders of magnitude. As the limits of Moore's law are approached, optical mesh networks based on wavelength-division multiplexing (WDM) have the ability to satisfy the large- and scalable-bandwidth requirements of our future backbone telecommunication networks. In addition, this trend is also affecting other special-purpose systems in applications such as mobile platforms, automobiles, aircraft, ships, tanks, and micro unmanned air vehicles (UAVs) which are becoming independent systems roaming the sky while sensing data, processing, making decisions, and even communicating and networking with other heterogeneous systems. Recently, WDM optical technologies have seen advances in its transmission speeds, switching technologies, routing protocols, and control systems. Such advances have made WDM optical technology an appealing choice for the design of future Internet architectures. Along these lines, scientists across the entire spectrum of the network architectures from physical layer to applications have been working on developing devices and communication protocols which can take full advantage of the rapid advances in WDM technology. Nevertheless, the focus has always been on large-scale telecommunication networks that span hundreds and even thousands of miles. Given these advances, we investigate the vision and applicability of integrating the traditionally large-scale WDM optical networks into miniaturized mobile platforms such as UAVs. We explain

  14. Integrated network design and scheduling problems :

    Energy Technology Data Exchange (ETDEWEB)

    Nurre, Sarah G.; Carlson, Jeffrey J.

    2014-01-01

    We consider the class of integrated network design and scheduling problems. These problems focus on selecting and scheduling operations that will change the characteristics of a network, while being speci cally concerned with the performance of the network over time. Motivating applications of INDS problems include infrastructure restoration after extreme events and building humanitarian distribution supply chains. While similar models have been proposed, no one has performed an extensive review of INDS problems from their complexity, network and scheduling characteristics, information, and solution methods. We examine INDS problems under a parallel identical machine scheduling environment where the performance of the network is evaluated by solving classic network optimization problems. We classify that all considered INDS problems as NP-Hard and propose a novel heuristic dispatching rule algorithm that selects and schedules sets of arcs based on their interactions in the network. We present computational analysis based on realistic data sets representing the infrastructures of coastal New Hanover County, North Carolina, lower Manhattan, New York, and a realistic arti cial community CLARC County. These tests demonstrate the importance of a dispatching rule to arrive at near-optimal solutions during real-time decision making activities. We extend INDS problems to incorporate release dates which represent the earliest an operation can be performed and exible release dates through the introduction of specialized machine(s) that can perform work to move the release date earlier in time. An online optimization setting is explored where the release date of a component is not known.

  15. Spectral integration of linear boundary value problems

    CERN Document Server

    Viswanath, Divakar

    2012-01-01

    Spectral integration is a method for solving linear boundary value problems which uses the Chebyshev series representation of functions to avoid the numerical discretization of derivatives. It is occasionally attributed to Zebib (J. of Computational Physics vol. 53 (1984), p. 443-455) and more often to Greengard (SIAM J. on Numerical Analysis vol. 28 (1991), p. 1071-1080). Its advantage is believed to be its relative immunity to errors that arise when nearby grid points are used to approximate derivatives. In this paper, we reformulate the method of spectral integration by changing it in four different ways. The changes consist of a more convenient integral formulation, a different way to treat and interpret boundary conditions, treatment of higher order problems in factored form, and the use of piecewise Chebyshev grid points. Our formulation of spectral integration is more flexible and powerful as show by its ability to solve a problem that would otherwise take 8192 grid points using only 96 grid points. So...

  16. Model Driven Architecture (MDA: Integration and Model Reuse for Open Source eLearning Platforms

    Directory of Open Access Journals (Sweden)

    Blasius Lofi Dewanto

    2005-02-01

    Full Text Available Open Source (OS community offers numerous eLearning platforms of both types: Learning Management Systems (LMS and Learning Content Systems (LCS. General purpose OS intermediaries such as SourceForge, ObjectWeb, Apache or specialized intermediaries like CampusSource reduce the cost to locate such eLearning platforms. Still, it is impossible to directly compare the functionalities of those OS software products without performing detailed testing on each product. Some articles available from eLearning Wikipedia show comparisons between eLearning platforms which can help, but at the end they barely serve as documentation which are becoming out of date quickly (1. The absence of integration activities between OS eLearning platforms - which are sometimes quite similar in terms of functionalities and implementation technologies - is sometimes critical since most of the OS projects possess small financial and human resources. This paper shows a possible solution for these barriers of OS eLearning platforms. We propose the Model Driven Architecture (MDA concept to capture functionalities and to identify similarities between available OS eLearning platforms. This contribution evolved from a fruitful discussion at the 2nd CampusSource Developer Conference at the University of Muenster (27th August 2004.Die Open Source-Community bietet zahlreiche eLearning-Plattformen an: Learning Management-Systeme (LMS sowie Learning Content-Systeme (LCS. Allgemeine Open-Source-Mediatoren, wie SourceForge, ObjectWeb, Apache und der eLearning-spezifische Mediator CampusSource ermöglichen eine einfache Suche nach eLearning-Softwareprodukten. Ein Vergleich unterschiedlicher Plattformen in Bezug auf ihre Funktionalitäten ist jedoch aufwändig. Beiträge aus der “eLearning Wikipedia” können kaum als Entscheidungsgrundlage genutzt werden, da sie schnell veraltet sind (1. Zudem fehlen derzeit Aktivitäten zur Integration von Open Source-eLearning-Plattformen, die oft

  17. A service platform architecture design towards a light integration of heterogeneous systems in the wellbeing domain.

    Science.gov (United States)

    Yang, Yaojin; Ahtinen, Aino; Lahteenmaki, Jaakko; Nyman, Petri; Paajanen, Henrik; Peltoniemi, Teijo; Quiroz, Carlos

    2007-01-01

    System integration is one of the major challenges for building wellbeing or healthcare related information systems. In this paper, we are going to share our experiences on how to design a service platform called Nuadu service platform, for providing integrated services in occupational health promotion and health risk management through two heterogeneous systems. Our design aims for a light integration covering the layers, from data through service up to presentation, while maintaining the integrity of the underlying systems.

  18. Thermo-economic assessment of the integration of steam cycles on offshore platforms

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Tock, Laurence; Breuhaus, Peter

    2014-01-01

    The integration of steam bottoming cycles on oil platforms is often seen as a possible route to mitigate the CO2-emissions offshore. In this paper, a North Sea platform and its energy requirements are systematically analysed. The site-scale integration of steam networks is assessed by using therm...

  19. VOLTTRON Lite: Integration Platform for the Transactional Network

    Energy Technology Data Exchange (ETDEWEB)

    Haack, Jereme N.; Katipamula, Srinivas; Akyol, Bora A.; Lutes, Robert G.

    2013-10-31

    In FY13, Pacific Northwest National Laboratory (PNNL) with funding from the Department of Energy’s (DOE’s) Building Technologies Office (BTO) designed, prototyped and tested a transactional network platform. The platform is intended to support energy, operational and financial transactions between any networked entities (equipment, organizations, buildings, grid, etc.). Initially, in FY13, the concept demonstrated transactions between packaged rooftop units (RTUs) and the electric grid using applications or “agents” that reside on the platform, on the equipment, on local building controller or in the Cloud. This document describes the core of the transactional network platform, the Volttron Lite™ software and associated services hosted on the platform. Future enhancements are also discussed. The appendix of the document provides examples of how to use the various services hosted on the platform.

  20. Towards Digital Integration: Platform Thinking in the Fashion Business

    DEFF Research Database (Denmark)

    Schou, Finn

    2005-01-01

    , 1998). The intention of this paper is, through illustrative case studies from France and Denmark within the highly competitive business of optical frame design (fashion) to present a model for strategy as well as a practical model for improvement of time to market of styling objects by use of digital...... platforms. Aspects are: 1) selection of platform from a strategic point of view, 2) selection of 2D and 3D CAD from a practical point of view and 3) creation and implementation of digital platforms. Finally, briefly aspects of teaching of platform theory at the department of Architecture & Industrial design...

  1. Integrating routing decisions in public transportation problems

    CERN Document Server

    Schmidt, Marie E

    2014-01-01

    This book treats three planning problems arising in public railway transportation planning: line planning, timetabling, and delay management, with the objective to minimize passengers’ travel time. While many optimization approaches simplify these problems by assuming that passengers’ route choice is independent of the solution, this book focuses on models which take into account that passengers will adapt their travel route to the implemented planning solution. That is, a planning solution and passengers’ routes are determined and evaluated simultaneously. This work is technically deep, with insightful findings regarding complexity and algorithmic approaches to public transportation problems with integrated passenger routing. It is intended for researchers in the fields of mathematics, computer science, or operations research, working in the field of public transportation from an optimization standpoint. It is also ideal for students who want to gain intuition and experience in doing complexity proofs ...

  2. Design and Development of ChemInfoCloud: An Integrated Cloud Enabled Platform for Virtual Screening.

    Science.gov (United States)

    Karthikeyan, Muthukumarasamy; Pandit, Deepak; Bhavasar, Arvind; Vyas, Renu

    2015-01-01

    The power of cloud computing and distributed computing has been harnessed to handle vast and heterogeneous data required to be processed in any virtual screening protocol. A cloud computing platorm ChemInfoCloud was built and integrated with several chemoinformatics and bioinformatics tools. The robust engine performs the core chemoinformatics tasks of lead generation, lead optimisation and property prediction in a fast and efficient manner. It has also been provided with some of the bioinformatics functionalities including sequence alignment, active site pose prediction and protein ligand docking. Text mining, NMR chemical shift (1H, 13C) prediction and reaction fingerprint generation modules for efficient lead discovery are also implemented in this platform. We have developed an integrated problem solving cloud environment for virtual screening studies that also provides workflow management, better usability and interaction with end users using container based virtualization, OpenVz.

  3. Integration of a Balanced Virtual Manikin in a Virtual Reality Platform aimed at Virtual Prototyping

    CERN Document Server

    Rennuit, Antoine; Merlhiot, Xavier; Andriot, Claude; Guillaume, François; Chevassus, Nicolas; Chablat, Damien; Chedmail, Patrick

    2007-01-01

    The work presented here is aimed at introducing a virtual human controller in a virtual prototyping framework. After a brief introduction describing the problem solved in the paper, we describe the interest as for digital humans in the context of concurrent engineering. This leads us to draw a control architecture enabling to drive virtual humans in a real-time immersed way, and to interact with the product, through motion capture. Unfortunately, we show this control scheme can lead to unfeasible movements because of the lack of balance control. Introducing such a controller is a problem that was never addressed in the context of real-time. We propose an implementation of a balance controller, that we insert into the previously described control scheme. Next section is dedicated to show the results we obtained. Finally, we propose a virtual reality platform into which the digital character controller is integrated.

  4. Problems of Choquet Integral Practical Applications

    Directory of Open Access Journals (Sweden)

    Sergey Sakulin

    2013-04-01

    Full Text Available Choquet integral with respect to fuzzy measure is a generalization of weighted arithmetic mean aggregation operator. It allows taking into account the phenomenon of dependence between criteria. Due to this it is possible to reflect the expert knowledge more accurately without making the model simplification which is the assumption of independence of the aggregation criteria. The problems of Choquet fuzzy integral applications and possible ways of overcoming them are discussed. Practical applications for this relatively new apparatus are reviewed.

  5. Multidimensional integral representations problems of analytic continuation

    CERN Document Server

    Kytmanov, Alexander M

    2015-01-01

    The monograph is devoted to integral representations for holomorphic functions in several complex variables, such as Bochner-Martinelli, Cauchy-Fantappiè, Koppelman, multidimensional logarithmic residue etc., and their boundary properties. The applications considered are problems of analytic continuation of functions from the boundary of a bounded domain in C^n. In contrast to the well-known Hartogs-Bochner theorem, this book investigates functions with the one-dimensional property of holomorphic extension along complex lines, and includes the problems of receiving multidimensional boundary analogs of the Morera theorem.   This book is a valuable resource for specialists in complex analysis, theoretical physics, as well as graduate and postgraduate students with an understanding of standard university courses in complex, real and functional analysis, as well as algebra and geometry.

  6. Towards Digital Integration: Platform Thinking in the Fashion Business

    DEFF Research Database (Denmark)

    Schou, Finn

    2005-01-01

    , 1998). The intention of this paper is, through illustrative case studies from France and Denmark within the highly competitive business of optical frame design (fashion) to present a model for strategy as well as a practical model for improvement of time to market of styling objects by use of digital......The competition between companies is growing. Customers are demanding lower prices, a larger range of products and faster product innovation. In the same period steady streams of advanced technologies are becoming avail¬able which are supposed to pro¬vide adopters with the capability to respond ade...... platforms. Aspects are: 1) selection of platform from a strategic point of view, 2) selection of 2D and 3D CAD from a practical point of view and 3) creation and implementation of digital platforms. Finally, briefly aspects of teaching of platform theory at the department of Architecture & Industrial design...

  7. 2011 Biomass Program Platform Peer Review. Integrated Biorefineries

    Energy Technology Data Exchange (ETDEWEB)

    Rossmeissl, Neil [Office of Energy Efficiency and Renewable Energy (EERE), Washington, DC (United States)

    2012-02-01

    This document summarizes the recommendations and evaluations provided by an independent external panel of experts at the 2011 U.S. Department of Energy Biomass Program’s IBR Platform Review meeting.

  8. A CORBA-Based Integration Platform of Product Development Process Management for Concurrent Engineering

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Product development process management plays an important role in concurrent engineering (CE). The integration platform is a useful tool for effectively supporting the software development and inte gration. Based on the analysis of practical requirements for product development process management for CE, a CORBA-based integration platform of product development process management (IP-PDPM) is de signed and developed. The design principles for IP-PDPM are described. The system architecture and func tions of the platform are given, the key technologies for the implementation of IP-PDPM are presented, the application integration mechanism and its implementation techniques are also detailed.

  9. GPS/Optical/Inertial Integration for 3D Navigation Using Multi-Copter Platforms

    Science.gov (United States)

    Dill, Evan T.; Young, Steven D.; Uijt De Haag, Maarten

    2017-01-01

    In concert with the continued advancement of a UAS traffic management system (UTM), the proposed uses of autonomous unmanned aerial systems (UAS) have become more prevalent in both the public and private sectors. To facilitate this anticipated growth, a reliable three-dimensional (3D) positioning, navigation, and mapping (PNM) capability will be required to enable operation of these platforms in challenging environments where global navigation satellite systems (GNSS) may not be available continuously. Especially, when the platform's mission requires maneuvering through different and difficult environments like outdoor opensky, outdoor under foliage, outdoor-urban and indoor, and may include transitions between these environments. There may not be a single method to solve the PNM problem for all environments. The research presented in this paper is a subset of a broader research effort, described in [1]. The research is focused on combining data from dissimilar sensor technologies to create an integrated navigation and mapping method that can enable reliable operation in both an outdoor and structured indoor environment. The integrated navigation and mapping design is utilizes a Global Positioning System (GPS) receiver, an Inertial Measurement Unit (IMU), a monocular digital camera, and three short to medium range laser scanners. This paper describes specifically the techniques necessary to effectively integrate the monocular camera data within the established mechanization. To evaluate the developed algorithms a hexacopter was built, equipped with the discussed sensors, and both hand-carried and flown through representative environments. This paper highlights the effect that the monocular camera has on the aforementioned sensor integration scheme's reliability, accuracy and availability.

  10. An Integrated Platform for Dynamic Software Updating and its Application in Self-* systems

    DEFF Research Database (Denmark)

    Gregersen, Allan Raundahl; Jørgensen, Bo Nørregaard; Hadaytullah

    2012-01-01

    frameworks, component systems and application servers, Javeleon currently provides tight integration with the NetBeans Platform, facilitating dynamic updating for applications built on top of the NetBeans Platform in an unconstrained manner. Javeleon supports state-preserving unanticipated runtime evolution...

  11. Vane array with one or more non-integral platforms

    Science.gov (United States)

    Lohaus, Andrew S.; Campbell, Christian Xavier; Miller, Jr, Samuel R.; Marra, John J.

    2016-07-12

    A vane array adapted to be coupled to a vane carrier within a gas turbine engine is provided comprising: a plurality of elongated airfoils comprising at least a first airfoil and a second airfoil located adjacent to one another; a U-ring; first connector structure for coupling a radially inner end section of each of the first and second airfoils to the U-ring; second connector structure for coupling a radially outer end section of each of the first and second airfoils to the vane carrier; a platform extending between the first and second airfoils; and platform connector structure for coupling the platform to one of the U-ring and the vane carrier.

  12. A Global Integration Platform for Optimizing Cooperative Modeling and Simultaneous Joint Inversion of Multi-domain Geophysical Data

    Directory of Open Access Journals (Sweden)

    Fabio Chiappa

    2016-02-01

    Full Text Available This paper reviews the theoretical aspects and the practical issues of different types of geophysical integration approaches. Moreover it shows how these approaches can be combined and optimized into the same platform. We discuss both cooperative modeling and Simultaneous Joint Inversion (SJI as complementary methods for integration of multi-domain geophysical data: these data can be collected at surface (seismic, electromagnetic, gravity as well as in borehole (composite well logs. The main intrinsic difficulties of any SJI approach are the high computational requirements, the non-uniqueness of the final models, the proper choice of the relations between the different geophysical domains, the quantitative evaluation of reliability indicators. In order to face efficiently all these problems we propose and describe here a “systemic approach”: the algorithms of modeling and SJI are merged with an integration architecture that permits the selection of workflows and links between different algorithms, the management of data and models coming from different domains, the smart visualization of partial and final results. This Quantitative Integration System (QUIS has been implemented into a complex software and hardware platform, comprising many advanced codes working in cooperation and running on powerful computer clusters. The paper is divided into two main parts. First we discuss the theoretical formulation of SJI and the key concepts of the QUIS platform. In the second part we present a synthetic SJI test and a case history of QUIS application to a real exploration problem.

  13. Integrated Semantics Service Platform for the Internet of Things: A Case Study of a Smart Office

    Directory of Open Access Journals (Sweden)

    Minwoo Ryu

    2015-01-01

    Full Text Available The Internet of Things (IoT allows machines and devices in the world to connect with each other and generate a huge amount of data, which has a great potential to provide useful knowledge across service domains. Combining the context of IoT with semantic technologies, we can build integrated semantic systems to support semantic interoperability. In this paper, we propose an integrated semantic service platform (ISSP to support ontological models in various IoT-based service domains of a smart city. In particular, we address three main problems for providing integrated semantic services together with IoT systems: semantic discovery, dynamic semantic representation, and semantic data repository for IoT resources. To show the feasibility of the ISSP, we develop a prototype service for a smart office using the ISSP, which can provide a preset, personalized office environment by interpreting user text input via a smartphone. We also discuss a scenario to show how the ISSP-based method would help build a smart city, where services in each service domain can discover and exploit IoT resources that are wanted across domains. We expect that our method could eventually contribute to providing people in a smart city with more integrated, comprehensive services based on semantic interoperability.

  14. Integrated semantics service platform for the Internet of Things: a case study of a smart office.

    Science.gov (United States)

    Ryu, Minwoo; Kim, Jaeho; Yun, Jaeseok

    2015-01-19

    The Internet of Things (IoT) allows machines and devices in the world to connect with each other and generate a huge amount of data, which has a great potential to provide useful knowledge across service domains. Combining the context of IoT with semantic technologies, we can build integrated semantic systems to support semantic interoperability. In this paper, we propose an integrated semantic service platform (ISSP) to support ontological models in various IoT-based service domains of a smart city. In particular, we address three main problems for providing integrated semantic services together with IoT systems: semantic discovery, dynamic semantic representation, and semantic data repository for IoT resources. To show the feasibility of the ISSP, we develop a prototype service for a smart office using the ISSP, which can provide a preset, personalized office environment by interpreting user text input via a smartphone. We also discuss a scenario to show how the ISSP-based method would help build a smart city, where services in each service domain can discover and exploit IoT resources that are wanted across domains. We expect that our method could eventually contribute to providing people in a smart city with more integrated, comprehensive services based on semantic interoperability.

  15. SOA, SoBI & EDA - Paradigms for Integration Capabilities of BI Platform

    National Research Council Canada - National Science Library

    STOICA, Marian; GHILIC-MICU, Bogdan; Marinela, MIRCEA

    2008-01-01

    A Business Intelligence (BI) provider may offer a basic solution, a packed application or a comprising BI platform which integrates components from individual technologies in a synergic system. The providersâ...

  16. Apparatus, method and system to control accessibility of platform resources based on an integrity level

    Science.gov (United States)

    Jenkins, Chris; Pierson, Lyndon G.

    2016-10-25

    Techniques and mechanism to selectively provide resource access to a functional domain of a platform. In an embodiment, the platform includes both a report domain to monitor the functional domain and a policy domain to identify, based on such monitoring, a transition of the functional domain from a first integrity level to a second integrity level. In response to a change in integrity level, the policy domain may configure the enforcement domain to enforce against the functional domain one or more resource accessibility rules corresponding to the second integrity level. In another embodiment, the policy domain automatically initiates operations in aid of transitioning the platform from the second integrity level to a higher integrity level.

  17. Apparatus, method and system to control accessibility of platform resources based on an integrity level

    Energy Technology Data Exchange (ETDEWEB)

    Jenkins, Chris; Pierson, Lyndon G.

    2016-10-25

    Techniques and mechanism to selectively provide resource access to a functional domain of a platform. In an embodiment, the platform includes both a report domain to monitor the functional domain and a policy domain to identify, based on such monitoring, a transition of the functional domain from a first integrity level to a second integrity level. In response to a change in integrity level, the policy domain may configure the enforcement domain to enforce against the functional domain one or more resource accessibility rules corresponding to the second integrity level. In another embodiment, the policy domain automatically initiates operations in aid of transitioning the platform from the second integrity level to a higher integrity level.

  18. Multi-platform Integrated Positioning and Attitude Determination using GNSS

    NARCIS (Netherlands)

    Buist, P.J.

    2013-01-01

    There is trend in spacecraft engineering toward distributed systems where a number of smaller spacecraft work as a larger satellite. However, in order to make the small satellites work together as a single large platform, the precise relative positions (baseline) and orientations (attitude) of the e

  19. Development of a Biosensor Nanofluidic Platform for Integration with Terahertz Spectroscopic System

    Science.gov (United States)

    2014-06-27

    Public Release; Distribution Unlimited Development of a Biosensor Nanofluidic Platform for Integration With Terahertz Spectroscopic System The views...VA 22902 -8734 ABSTRACT Number of Papers published in peer-reviewed journals: Development of a Biosensor Nanofluidic Platform for Integration With...in sub-THz range required less than 0.01 ng of dry material. The developed highly sensitive biosensors operating at room temperature with

  20. Integration of the virtual model of a Stewart platform with the avatar of a vehicle in a virtual reality

    Science.gov (United States)

    Herbuś, K.; Ociepka, P.

    2016-08-01

    The development of methods of computer aided design and engineering allows conducting virtual tests, among others concerning motion simulation of technical means. The paper presents a method of integrating an object in the form of a virtual model of a Stewart platform with an avatar of a vehicle moving in a virtual environment. The area of the problem includes issues related to the problem of fidelity of mapping the work of the analyzed technical mean. The main object of investigations is a 3D model of a Stewart platform, which is a subsystem of the simulator designated for driving learning for disabled persons. The analyzed model of the platform, prepared for motion simulation, was created in the “Motion Simulation” module of a CAD/CAE class system Siemens PLM NX. Whereas the virtual environment, in which the moves the avatar of the passenger car, was elaborated in a VR class system EON Studio. The element integrating both of the mentioned software environments is a developed application that reads information from the virtual reality (VR) concerning the current position of the car avatar. Then, basing on the accepted algorithm, it sends control signals to respective joints of the model of the Stewart platform (CAD).

  1. Development and Integration of a Pulsed 2-micron Direct Detection Integrated Path Differential Absorption (IPDA) Lidar for CO2 Column Measurement from Airborne platform Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Develop, integrate and demonstrate a 2-micron pulsed Integrated Path Differential Absorption Lidar (IPDA) instrument CO2 Column Measurement from Airborne platform...

  2. Integrating Software Architecture Concepts into the MDA Platform with UML Profile

    Directory of Open Access Journals (Sweden)

    Adel Alti

    2007-01-01

    Full Text Available Architecture Description Languages (ADLs provide an abstract representation of software systems. Achieving a concrete mapping of such representation into the implementation is one of the principal aspects of MDA (Model Driven Architecture. Integration of ADLs within MDA confers to the MDA platform a higher level of abstraction and a degree of reuse of ADLs. Indeed they have significantly different platform metamodels which make the definition of mapping rules complex. This complexity is clearly noticeable when some software architecture concepts cannot be easily mapped to MDA platform. In this research, we propose to integrate software architecture within MDA. We define also strategy for direct transformation using a UML profile. It represents both software architecture model (PIM and MDA platform model (PSM in UML meta-model then elaborates transformation rules between results UML meta-models. The goal is to automate the process of deriving implementation platform from software concepts.

  3. National Bioenergy Center, Biochemical Platform Integration Project: Quarterly Update, Winter 2011-2012 (Newsletter)

    Energy Technology Data Exchange (ETDEWEB)

    2012-04-01

    Winter 2011-2012 issue of the National Bioenergy Center Biochemical Platform Integration Project quarterly update. Issue topics: 34th Symposium on Biotechnology for Fuels and Chemicals; feasibility of NIR spectroscopy-based rapid feedstock reactive screening; demonstrating integrated pilot-scale biomass conversion. The Biochemical Process Integration Task focuses on integrating the processing steps in enzyme-based lignocellulose conversion technology. This project supports the U.S. Department of Energy's efforts to foster development, demonstration, and deployment of 'biochemical platform' biorefineries that economically produce ethanol or other fuels, as well as commodity sugars and a variety of other chemical products, from renewable lignocellulosic biomass.

  4. New CMOS Compatible Platforms for Integrated Nonlinear Optical Signal Processing

    CERN Document Server

    Moss, D J

    2014-01-01

    Nonlinear photonic chips have succeeded in generating and processing signals all-optically with performance far superior to that possible electronically - particularly with respect to speed. Although silicon-on-insulator has been the leading platform for nonlinear optics, its high two-photon absorption at telecommunications wavelengths poses a fundamental limitation. This paper reviews some of the recent achievements in CMOS-compatible platforms for nonlinear optics, focusing on amorphous silicon and Hydex glass, highlighting their potential future impact as well as the challenges to achieving practical solutions for many key applications. These material systems have opened up many new capabilities such as on-chip optical frequency comb generation and ultrafast optical pulse generation and measurement.

  5. Development of Vacuum Vessel Design and Analysis Module for CFETR Integration Design Platform

    Directory of Open Access Journals (Sweden)

    Chen Zhu

    2016-01-01

    Full Text Available An integration design platform is under development for the design of the China Fusion Engineering Test Reactor (CFETR. It mainly includes the integration physical design platform and the integration engineering design platform. The integration engineering design platform aims at performing detailed engineering design for each tokamak component (e.g., breeding blanket, divertor, and vacuum vessel. The vacuum vessel design and analysis module is a part of the integration engineering design platform. The main idea of this module is to integrate the popular CAD/CAE software to form a consistent development environment. Specifically, the software OPTIMUS provides the approach to integrate the CAD/CAE software such as CATIA and ANSYS and form a design/analysis workflow for the vacuum vessel module. This design/analysis workflow could automate the process of modeling and finite element (FE analysis for vacuum vessel. Functions such as sensitivity analysis and optimization of geometric parameters have been provided based on the design/analysis workflow. In addition, data from the model and FE analysis could be easily exchanged among different modules by providing a unifying data structure to maintain the consistency of the global design. This paper describes the strategy and methodology of the workflow in the vacuum vessel module. An example is given as a test of the workflow and functions of the vacuum vessel module. The results indicate that the module is a feasible framework for future application.

  6. Enhancing Mobility: Integrating New Services into Your Library's Mobile Platform to Increase Traffic

    Science.gov (United States)

    Felts, John W., Jr.

    2014-01-01

    Kimbel Library launched its mobile environment and ran it in full production for several months yet usage patterns were quite low and flat. The library only saw a substantial increase in usage when new, value-added services were integrated into this platform. Upon implementing and integrating discovery services, chat and SMS capabilities, and…

  7. Wafer-scale integrated micro-supercapacitors on an ultrathin and highly flexible biomedical platform.

    Science.gov (United States)

    Maeng, Jimin; Meng, Chuizhou; Irazoqui, Pedro P

    2015-02-01

    We present wafer-scale integrated micro-supercapacitors on an ultrathin and highly flexible parylene platform, as progress toward sustainably powering biomedical microsystems suitable for implantable and wearable applications. All-solid-state, low-profile (RF) rectifying circuit is achieved on a single parylene platform, yielding a complete RF energy harvesting microsystem. The system discharging rate is shown to improve by ~17 times in the presence of the integrated micro-supercapacitors. This result suggests that the integrated micro-supercapacitor technology described herein is a promising strategy for sustainably powering biomedical microsystems dedicated to implantable and wearable applications.

  8. Research on application information system integration platform in medicine manufacturing enterprise.

    Science.gov (United States)

    Deng, Wu; Zhao, Huimin; Zou, Li; Li, Yuanyuan; Li, Zhengguang

    2012-08-01

    Computer and information technology popularizes in the medicine manufacturing enterprise for its potentials in working efficiency and service quality. In allusion to the explosive data and information of application system in current medicine manufacturing enterprise, we desire to propose a novel application information system integration platform in medicine manufacturing enterprise, which based on a combination of RFID technology and SOA, to implement information sharing and alternation. This method exploits the application integration platform across service interface layer to invoke the RFID middleware. The loose coupling in integration solution is realized by Web services. The key techniques in RFID event components and expanded role-based security access mechanism are studied in detail. Finally, a case study is implemented and tested to evidence our understanding on application system integration platform in medicine manufacturing enterprise.

  9. Integrated Alignment and Inspection Platform for High Precision Optical Continuous Images

    Directory of Open Access Journals (Sweden)

    Chuen-Horng Lin

    2014-11-01

    Full Text Available This platform is mainly intended to be used as a facility for high precision optical continuous images. Then, with a fixed pattern being selected, this platform can quickly search, with resistance to variation, the mark that corresponds to the pattern in order to achieve the alignment and inspection target. Since the pattern is a minute component with multiple shapes and unstable features, this platform can automatically acquire it through the system or select it by user. The targets searched by the mark include light, intensity, occlusion and rotation. It then, calculates the variances of light, intensity, occlusion and rotation individually with the mark under detection, search and pattern to achieve the inspection function. Therefore, combined with a quick and accurate mark detection and the search method, this platform builds an interface integrated platform that is easy to operate and user-friendly.

  10. A middleware-based platform for the integration of bioinformatic services

    Directory of Open Access Journals (Sweden)

    Guzmán Llambías

    2015-08-01

    Full Text Available Performing Bioinformatic´s experiments involve an intensive access to distributed services and information resources through Internet. Although existing tools facilitate the implementation of workflow-oriented applications, they lack of capabilities to integrate services beyond low-scale applications, particularly integrating services with heterogeneous interaction patterns and in a larger scale. This is particularly required to enable a large-scale distributed processing of biological data generated by massive sequencing technologies. On the other hand, such integration mechanisms are provided by middleware products like Enterprise Service Buses (ESB, which enable to integrate distributed systems following a Service Oriented Architecture. This paper proposes an integration platform, based on enterprise middleware, to integrate Bioinformatics services. It presents a multi-level reference architecture and focuses on ESB-based mechanisms to provide asynchronous communications, event-based interactions and data transformation capabilities. The paper presents a formal specification of the platform using the Event-B model.

  11. An integrated image analysis platform to quantify signal transduction in single cells

    OpenAIRE

    Pelet, Serge; Dechant, Reinhard; Lee, Sung Sik; van Drogen, Frank; Peter, Matthias

    2012-01-01

    Microscopy can provide invaluable information about biological processes at the single cell level. It remains a challenge, however, to extract quantitative information from these types of datasets. We have developed an image analysis platform named YeastQuant to simplify data extraction by offering an integrated method to turn time-lapse movies into single cell measurements. This platform is based on a database with a graphical user interface where the users can describe their experiments....

  12. Participatory Planning, Monitoring and Evaluation of Multi-Stakeholder Platforms in Integrated Landscape Initiatives.

    Science.gov (United States)

    Kusters, Koen; Buck, Louise; de Graaf, Maartje; Minang, Peter; van Oosten, Cora; Zagt, Roderick

    2017-03-21

    Integrated landscape initiatives typically aim to strengthen landscape governance by developing and facilitating multi-stakeholder platforms. These are institutional coordination mechanisms that enable discussions, negotiations, and joint planning between stakeholders from various sectors in a given landscape. Multi-stakeholder platforms tend to involve complex processes with diverse actors, whose objectives and focus may be subjected to periodic re-evaluation, revision or reform. In this article we propose a participatory method to aid planning, monitoring, and evaluation of such platforms, and we report on experiences from piloting the method in Ghana and Indonesia. The method is comprised of three components. The first can be used to look ahead, identifying priorities for future multi-stakeholder collaboration in the landscape. It is based on the identification of four aspirations that are common across multi-stakeholder platforms in integrated landscape initiatives. The second can be used to look inward. It focuses on the processes within an existing multi-stakeholder platform in order to identify areas for possible improvement. The third can be used to look back, identifying the main outcomes of an existing platform and comparing them to the original objectives. The three components can be implemented together or separately. They can be used to inform planning and adaptive management of the platform, as well as to demonstrate performance and inform the design of new interventions.

  13. Oil and gas platforms with steam bottoming cycles: System integration and thermoenvironomic evaluation

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Tock, Laurence; Breuhaus, Peter

    2014-01-01

    The integration of steam bottoming cycles on oil and gas platforms is currently regarded as the most promising option for improving the performance of these energy-intensive systems. In this paper, a North Sea platform is taken as case study, and a systematic analysis of its energy requirements...... cooling utility, and (iv) the weight limitations on the platform are quantitatively assessed. The results illustrate the benefits of converting the gas turbine process into a combined cycle, since the fuel gas consumption and the total CO2-emissions can be reduced by more than 15 %. Using the cooling...

  14. An integrated platform for image-guided cardiac resynchronization therapy

    Science.gov (United States)

    Ma, Ying Liang; Shetty, Anoop K.; Duckett, Simon; Etyngier, Patrick; Gijsbers, Geert; Bullens, Roland; Schaeffter, Tobias; Razavi, Reza; Rinaldi, Christopher A.; Rhode, Kawal S.

    2012-05-01

    Cardiac resynchronization therapy (CRT) is an effective procedure for patients with heart failure but 30% of patients do not respond. This may be due to sub-optimal placement of the left ventricular (LV) lead. It is hypothesized that the use of cardiac anatomy, myocardial scar distribution and dyssynchrony information, derived from cardiac magnetic resonance imaging (MRI), may improve outcome by guiding the physician for optimal LV lead positioning. Whole heart MR data can be processed to yield detailed anatomical models including the coronary veins. Cine MR data can be used to measure the motion of the LV to determine which regions are late-activating. Finally, delayed Gadolinium enhancement imaging can be used to detect regions of scarring. This paper presents a complete platform for the guidance of CRT using pre-procedural MR data combined with live x-ray fluoroscopy. The platform was used for 21 patients undergoing CRT in a standard catheterization laboratory. The patients underwent cardiac MRI prior to their procedure. For each patient, a MRI-derived cardiac model, showing the LV lead targets, was registered to x-ray fluoroscopy using multiple views of a catheter looped in the right atrium. Registration was maintained throughout the procedure by a combination of C-arm/x-ray table tracking and respiratory motion compensation. Validation of the registration between the three-dimensional (3D) roadmap and the 2D x-ray images was performed using balloon occlusion coronary venograms. A 2D registration error of 1.2 ± 0.7 mm was achieved. In addition, a novel navigation technique was developed, called Cardiac Unfold, where an entire cardiac chamber is unfolded from 3D to 2D along with all relevant anatomical and functional information and coupled to real-time device detection. This allowed more intuitive navigation as the entire 3D scene was displayed simultaneously on a 2D plot. The accuracy of the unfold navigation was assessed off-line using 13 patient data sets

  15. Accuracy assessment of the integration of GNSS and a MEMS IMU in a terrestrial platform.

    Science.gov (United States)

    Madeira, Sergio; Yan, Wenlin; Bastos, Luísa; Gonçalves, José A

    2014-11-04

    MEMS Inertial Measurement Units are available at low cost and can replace expensive units in mobile mapping platforms which need direct georeferencing. This is done through the integration with GNSS measurements in order to achieve a continuous positioning solution and to obtain orientation angles. This paper presents the results of the assessment of the accuracy of a system that integrates GNSS and a MEMS IMU in a terrestrial platform. We describe the methodology used and the tests realized where the accuracy of the positions and orientation parameters were assessed using an independent photogrammetric technique employing cameras that integrate the mobile mapping system developed by the authors. Results for the accuracy of attitude angles and coordinates show that accuracies better than a decimeter in positions, and under a degree in angles, can be achieved even considering that the terrestrial platform is operating in less than favorable environments.

  16. Open access to technology platforms for InP-based photonic integrated circuits

    Science.gov (United States)

    Ławniczuk, Katarzyna; Augustin, Luc M.; Grote, Norbert; Wale, Michael J.; Smit, Meint K.; Williams, Kevin A.

    2015-04-01

    Open access to generic technology platforms for photonic integrated circuit manufacturing enables low-cost development of application-specific photonic chips for novel or improved products. It brings photonic ICs within reach for many industrial users and research institutes, by moving toward a fabless business model. In the current status, InP-based open access manufacturing services are offered through multi-project wafer runs by Fraunhofer Heinrich Hertz Institut, SMART Photonics, and Oclaro. In this paper, we review state-of-the-art InP photonic integration technology platforms, present examples of complex InP photonic ICs developed in the generic technologies, and give a prospect for further development of these photonic integration platforms.

  17. A chip-scale integrated cavity-electro-optomechanics platform

    CERN Document Server

    Winger, Martin; Alegre, Thiago P Mayer; Safavi-Naeini, Amir H; Meenehan, Seán; Cohen, Justin; Stobbe, Søren; Painter, Oskar

    2011-01-01

    We present an integrated optomechanical and electromechanical nanocavity, in which a common mechanical degree of freedom is coupled to an ultrahigh-Q photonic crystal defect cavity and an electrical circuit. The sys- tem allows for wide-range, fast electrical tuning of the optical nanocavity resonances, and for electrical control of optical radiation pressure back-action effects such as mechanical amplification (phonon lasing), cooling, and stiffening. These sort of integrated devices offer a new means to efficiently interconvert weak microwave and optical signals, and are expected to pave the way for a new class of micro-sensors utilizing optomechanical back-action for thermal noise reduction and low-noise optical read-out.

  18. A chip-scale integrated cavity-electro-optomechanics platform

    DEFF Research Database (Denmark)

    Winger, M.; Blasius, T. D.; Mayer Alegre, T. P.

    2011-01-01

    We present an integrated optomechanical and electromechanical nanocavity, in which a common mechanical degree of freedom is coupled to an ultrahigh-Q photonic crystal defect cavity and an electrical circuit. The system allows for wide-range, fast electrical tuning of the optical nanocavity resona...... the way for a new class of micro-sensors utilizing optomechanical back-action for thermal noise reduction and low-noise optical read-out....

  19. Integrated genome browser: visual analytics platform for genomics

    OpenAIRE

    2016-01-01

    Motivation: Genome browsers that support fast navigation through vast datasets and provide interactive visual analytics functions can help scientists achieve deeper insight into biological systems. Toward this end, we developed Integrated Genome Browser (IGB), a highly configurable, interactive and fast open source desktop genome browser. Results: Here we describe multiple updates to IGB, including all-new capabilities to display and interact with data from high-throughput sequencing experime...

  20. REopt: A Platform for Energy System Integration and Optimization

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Katherine H [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Cutler, Dylan S [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Olis, Daniel R [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Elgqvist, Emma M [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Li, Xiangkun [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Laws, Nicholas D [National Renewable Energy Laboratory (NREL), Golden, CO (United States); DiOrio, Nicholas A [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Walker, H. A [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2017-09-22

    REopt is a techno-economic decision support model used to optimize energy systems for buildings, campuses, communities, and microgrids. The primary application of the model is for optimizing the integration and operation of behind-the-meter energy assets. This report provides an overview of the model, including its capabilities and typical applications; inputs and outputs; economic calculations; technology descriptions; and model parameters, variables, and equations. The model is highly flexible, and is continually evolving to meet the needs of each analysis. Therefore, this report is not an exhaustive description of all capabilities, but rather a summary of the core components of the model.

  1. SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum

    Directory of Open Access Journals (Sweden)

    Wang Zhi-Qin

    2008-06-01

    Full Text Available Abstract Background Schistosoma japonicum is one of the three major blood fluke species, the etiological agents of schistosomiasis which remains a serious public health problem with an estimated 200 million people infected in 76 countries. In recent years, enormous amounts of both transcriptomic and proteomic data of schistosomes have become available, providing information on gene expression profiles for developmental stages and tissues of S. japonicum. Here, we establish a public searchable database, termed SjTPdb, with integrated transcriptomic and proteomic data of S. japonicum, to enable more efficient access and utility of these data and to facilitate the study of schistosome biology, physiology and evolution. Description All the available ESTs, EST clusters, and the proteomic dataset of S. japonicum are deposited in SjTPdb. The core of the database is the 8,420 S. japonicum proteins translated from the EST clusters, which are well annotated for sequence similarity, structural features, functional ontology, genomic variations and expression patterns across developmental stages and tissues including the tegument and eggshell of this flatworm. The data can be queried by simple text search, BLAST search, search based on developmental stage of the life cycle, and an integrated search for more specific information. A PHP-based web interface allows users to browse and query SjTPdb, and moreover to switch to external databases by the following embedded links. Conclusion SjTPdb is the first schistosome database with detailed annotations for schistosome proteins. It is also the first integrated database of both transcriptome and proteome of S. japonicum, providing a comprehensive data resource and research platform to facilitate functional genomics of schistosome. SjTPdb is available from URL: http://function.chgc.sh.cn/sj-proteome/index.htm.

  2. An integrated photocatalytic microfluidic platform enabling total phosphorus digestion

    Science.gov (United States)

    Tong, Jianhua; Dong, Tian; Bian, Chao; Wang, Minrui; Wang, Fangfang; Bai, Yin; Xia, Shanhong

    2015-02-01

    This paper presents an integrated thermally assisted photocatalytic microfluidic chip and its application to the digestion of total phosphorus (TP) in freshwater. A micro heater, a micro temperature sensor, thermal-isolation channels and a polymethylsiloxane (PDMS) reaction chamber were fabricated on the microfluidic chip. Nano-TiO2 film sputtered on the surface of silicon in the reaction area was used as the photocatalyst, and a micro ultraviolet A-ray-light-emitting diode (UVA-LED) array fabricated by MEMS technology were attached to the top of reaction chamber for TP degradation. In this study, sodium tripolyphosphate (Na5P3O10) and sodium glycerophosphate (C3H7Na2O6P) were chosen as the typical components of TP, and these water samples were digested under UVA light irradiation and heating at the same time. Compared with the conventional high-temperature TP digestion which works at 120 °C for 30 min, the thermally assisted UVA digestion method could work at relatively low temperature, and the power consumption is decreased to less than 2 W. Since this digestion method could work without an oxidizing reagent, it is compatible with the electrochemical detection process, which makes it possible to achieve a fully functional detection chip by integrating the digestion unit and electrochemical microelectrode, to realize the on-chip detection of TP, and other water quality parameters such as total nitrogen and chemical oxygen demand.

  3. Hybrid Integrated Silicon Microfluidic Platform for Fluorescence Based Biodetection

    Directory of Open Access Journals (Sweden)

    André Darveau

    2007-09-01

    Full Text Available The desideratum to develop a fully integrated Lab-on-a-chip device capable ofrapid specimen detection for high throughput in-situ biomedical diagnoses and Point-of-Care testing applications has called for the integration of some of the novel technologiessuch as the microfluidics, microphotonics, immunoproteomics and Micro ElectroMechanical Systems (MEMS. In the present work, a silicon based microfluidic device hasbeen developed for carrying out fluorescence based immunoassay. By hybrid attachment ofthe microfluidic device with a Spectrometer-on-chip, the feasibility of synthesizing anintegrated Lab-on-a-chip type device for fluorescence based biosensing has beendemonstrated. Biodetection using the microfluidic device has been carried out usingantigen sheep IgG and Alexafluor-647 tagged antibody particles and the experimentalresults prove that silicon is a compatible material for the present application given thevarious advantages it offers such as cost-effectiveness, ease of bulk microfabrication,superior surface affinity to biomolecules, ease of disposability of the device etc., and is thussuitable for fabricating Lab-on-a-chip type devices.

  4. OTEC platform configuration and integration. Volume II. Technical concept. Final report

    Energy Technology Data Exchange (ETDEWEB)

    None

    1978-07-07

    The configuration, integration, and evaluation studies performed in the first phase of this contract resulted in a ranking of the most feasible platform candidates for commercial OTEC applications. On the basis of the results obtained from three individual contractors performing the same study, the Department of Energy made selections of two platform hulls for each contractor for conceptual designs. For Phase-II studies, M. Rosenblatt and Son, Inc. (MR and S) project team was given the SPAR and SPHERE platforms to perform not only conceptual designs for, but also cost and time schedules and sensitivity analyses. This is the second volume of a three-volume MR and S report, and it presents the results of conceptual designs for the two platforms, the facilities and equipment required for construction, deployment, and operation of these platforms, and cost estimates and time schedules. All conceptual design work is performed for the baseline site on West Coast of Florida. The cost differentials and other considerations involved with deploying the platforms in the New Orleans and Puerto Rico sites are also presented. As an end product of the complete study, the costs for the SPAR and the SPHERE platforms are reported both in terms of acquisition costs in 1978 dollars and life cycle costs in dollars per kilowatt.

  5. An integrated image processing platform designed for Chinese GF-1 wide field view data

    Science.gov (United States)

    Li, Zhishan; Shi, Runhe; Liu, Chaoshun; Chen, Maosi

    2016-09-01

    The Wide Field View (WFV), a space borne multi-spectral sensor onboard the Chinese GaoFen-1 (GF-1) satellite from the China High-resolution Earth Observation System, is operating in orbit dedicating to providing Earth observation with decametric spatial resolution, high temporal resolution and wide coverage for environment monitoring purpose. The objective of this study is to present an integrated image processing and environment monitoring platform specifically for GF-1 WFV data. The platform is developed with a multi-layer architecture and C/S structure, which primarily consists of image pre-processing, environment monitoring, data visualization, and results output modules. The client application was created by using C# whereas IDL was used to develop image processing and other relevant algorithms. This paper focuses mainly on the overall design of the platform and related key techniques. The platform has been implemented as a stand-alone application, and successfully implemented in real world environment monitoring studies.

  6. A Integrated Service Platform for Remote Sensing Image 3D Interpretation and Draughting based on HTML5

    Science.gov (United States)

    LIU, Yiping; XU, Qing; ZhANG, Heng; LV, Liang; LU, Wanjie; WANG, Dandi

    2016-11-01

    The purpose of this paper is to solve the problems of the traditional single system for interpretation and draughting such as inconsistent standards, single function, dependence on plug-ins, closed system and low integration level. On the basis of the comprehensive analysis of the target elements composition, map representation and similar system features, a 3D interpretation and draughting integrated service platform for multi-source, multi-scale and multi-resolution geospatial objects is established based on HTML5 and WebGL, which not only integrates object recognition, access, retrieval, three-dimensional display and test evaluation but also achieves collection, transfer, storage, refreshing and maintenance of data about Geospatial Objects and shows value in certain prospects and potential for growth.

  7. OTEC platform configuration and integration study. Volume I. Systems engineering and integration. Final report

    Energy Technology Data Exchange (ETDEWEB)

    None

    1978-04-01

    The economic success of an Ocean Thermal Energy Conversion (OTEC) system is highly dependent on a platform which provides adequate support for the power system, accommodates reliably the cold water pipe, and is most cost effective. The results of a study conducted for the Department of Energy to assess six generic types of platforms to determine the most satisfactory platform for severl potential sites are presented. The six platform configurations are ship, circular barge, semi-submersible, Tuned Sphere, submersible, and spar. These represent directional and symmetric types of platforms which operate on the surface, at the interface, and submerged. The five sites for this study were primarily New Orleans, Keahole Point (Hawaii), Brazil, and secondarily Key West and Puerto Rico. Electrical transmission of energy by submarine cable is the planned form of energy transmission for all sites except Brazil, where chemical conversion is to be the method of transmission. This study is devoted to the platform (or ocean systems) of the OTEC plant which is chiefly comprised of the hull and structure, the seawater system, the position control system, and miscellaneous support/assembly systems. The principal elements in the work breakdown structure for the commercial plants are presented. The assessment of the six platform configurations was conducted utilizing a baseline plan (100-MW(e) (Net)) and site (New Orleans) with variations from the baseline to cover the range of interested platforms and sites.

  8. Integrated control platform for converged optical and wireless networks

    DEFF Research Database (Denmark)

    Yan, Ying

    the complementary characteristics of the optical networks and the wireless networks, addresses motivations for their interworking, discusses the current progress in hybrid network architectures as well as the functionalities of a control system, and identifies the achieved research contributions in the integrated...... are distributed based on the network states, channel conditions, and QoS requirements. A new aspect in the design of future network is the energy efficiency. An energy management mechanism is proposed and evaluated for the optical network. With regard to power saving, a sleep mode operation is developed....... Therefore, power is conserved by switch off some operating functions. The sleep period and wake up period are computed and assigned using two alternative scheduling schemes, which show trade-off performances on energy efficiency, queuing delay and network bandwidth utilization. To summarize...

  9. Problems of information technologies integration into humanities

    Directory of Open Access Journals (Sweden)

    Tatiana F. Milova

    2011-05-01

    Full Text Available The author considers main transformations impacted by information technologies in humanitarian researches, discourse and education. Net resources, штащкьфешщт exchange, hypertext and interactive learn means are focused as key integration points.

  10. IVSPlat 1.0: an integrated virtual screening platform with a molecular graphical interface.

    Science.gov (United States)

    Sun, Yin Xue; Huang, Yan Xin; Li, Feng Li; Wang, Hong Yan; Fan, Cong; Bao, Yong Li; Sun, Lu Guo; Ma, Zhi Qiang; Kong, Jun; Li, Yu Xin

    2012-01-05

    The virtual screening (VS) of lead compounds using molecular docking and pharmacophore detection is now an important tool in drug discovery. VS tasks typically require a combination of several software tools and a molecular graphics system. Thus, the integration of all the requisite tools in a single operating environment could reduce the complexity of running VS experiments. However, only a few freely available integrated software platforms have been developed. A free open-source platform, IVSPlat 1.0, was developed in this study for the management and automation of VS tasks. We integrated several VS-related programs into a molecular graphics system to provide a comprehensive platform for the solution of VS tasks based on molecular docking, pharmacophore detection, and a combination of both methods. This tool can be used to visualize intermediate and final results of the VS execution, while also providing a clustering tool for the analysis of VS results. A case study was conducted to demonstrate the applicability of this platform. IVSPlat 1.0 provides a plug-in-based solution for the management, automation, and visualization of VS tasks. IVSPlat 1.0 is an open framework that allows the integration of extra software to extend its functionality and modified versions can be freely distributed. The open source code and documentation are available at http://kyc.nenu.edu.cn/IVSPlat/.

  11. Integrated nanophotonic frequency shifter on the silicon-organic hybrid (SOH) platform for laser vibrometry

    Energy Technology Data Exchange (ETDEWEB)

    Lauermann, M.; Weimann, C.; Palmer, R.; Schindler, P. C. [Institute of Photonics and Quantum Electronics, Karlsruhe Institute of Technology, 76131 Karlsruhe (Germany); Koeber, S.; Freude, W., E-mail: christian.koos@kit.edu; Koos, C., E-mail: christian.koos@kit.edu [Institute of Photonics and Quantum Electronics, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany and Institute of Microstructure Technology, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen (Germany); Rembe, C. [Polytec GmbH, 76337 Waldbronn (Germany)

    2014-05-27

    We demonstrate a waveguide-based frequency shifter on the silicon photonic platform, enabling frequency shifts up to 10 GHz. The device is realized by silicon-organic hybrid (SOH) integration. Temporal shaping of the drive signal allows the suppression of spurious side-modes by more than 23 dB.

  12. National Bioenergy Center - Biochemical Platform Integration Project: Quarterly Update, Winter 2010

    Energy Technology Data Exchange (ETDEWEB)

    Schell, D.

    2011-02-01

    Winter 2011 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: 33rd Symposium on Biotechnology for Fuels and Chemicals program topic areas; results from reactive membrane extraction of inhibitors from dilute-acid pretreated corn stover; list of 2010 task publications.

  13. Flexible and Stretchable Physical Sensor Integrated Platforms for Wearable Human-Activity Monitoringand Personal Healthcare.

    Science.gov (United States)

    Trung, Tran Quang; Lee, Nae-Eung

    2016-06-01

    Flexible and stretchable physical sensors that can measure and quantify electrical signals generated by human activities are attracting a great deal of attention as they have unique characteristics, such as ultrathinness, low modulus, light weight, high flexibility, and stretchability. These flexible and stretchable physical sensors conformally attached on the surface of organs or skin can provide a new opportunity for human-activity monitoring and personal healthcare. Consequently, in recent years there has been considerable research effort devoted to the development of flexible and stretchable physical sensors to fulfill the requirements of future technology, and much progress has been achieved. Here, the most recent developments of flexible and stretchable physical sensors are described, including temperature, pressure, and strain sensors, and flexible and stretchable sensor-integrated platforms. The latest successful examples of flexible and stretchable physical sensors for the detection of temperature, pressure, and strain, as well as their novel structures, technological innovations, and challenges, are reviewed first. In the next section, recent progress regarding sensor-integrated wearable platforms is overviewed in detail. Some of the latest achievements regarding self-powered sensor-integrated wearable platform technologies are also reviewed. Further research direction and challenges are also proposed to develop a fully sensor-integrated wearable platform for monitoring human activity and personal healthcare in the near future.

  14. Surface integrals approach to solution of some free boundary problems

    Directory of Open Access Journals (Sweden)

    Igor Malyshev

    1988-01-01

    Full Text Available Inverse problems in which it is required to determine the coefficients of an equation belong to the important class of ill-posed problems. Among these, of increasing significance, are problems with free boundaries. They can be found in a wide range of disciplines including medicine, materials engineering, control theory, etc. We apply the integral equations techniques, typical for parabolic inverse problems, to the solution of a generalized Stefan problem. The regularization of the corresponding system of nonlinear integral Volterra equations, as well as local existence, uniqueness, continuation of its solution, and several numerical experiments are discussed.

  15. Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform.

    Science.gov (United States)

    Nikolsky, Yuri; Kirillov, Eugene; Zuev, Roman; Rakhmatulin, Eugene; Nikolskaya, Tatiana

    2009-01-01

    Analysis of microarray, SNPs, proteomics, and other high-throughput (OMICs) data is challenging because of its biological complexity and high level of technical and biological noise. One way to deal with both problems is to perform analysis with a high-fidelity annotated knowledge base of protein interactions, pathways, and functional ontologies. This knowledge base has to be structured in a computer-readable format and must include software tools for managing experimental data, analysis, and reporting. Here we present MetaDiscovery, an integrated platform for functional data analysis which is being developed at GeneGo for the past 8 years. On the content side, MetaDiscovery encompasses a comprehensive database of protein interactions of different types, pathways, network models and 10 functional ontologies covering human, mouse, and rat proteins. The analytical toolkit includes tools for gene/protein list enrichment analysis, statistical "interactome" tool for identification of over- and under-connected proteins in the data set, and a network module made up of network generation algorithms and filters. The suite also features MetaSearch, an application for combinatorial search of the database content, as well as a Java-based tool called MapEditor for drawing and editing custom pathway maps. Applications of MetaDiscovery include identification of potential biomarkers and drug targets, pathway hypothesis generation, analysis of biological effects for novel small molecule compounds, and clinical applications (analysis of large cohorts of patients and translational and personalized medicine).

  16. Global transcript structure resolution of high gene density genomes through multi-platform data integration.

    Science.gov (United States)

    O'Grady, Tina; Wang, Xia; Höner Zu Bentrup, Kerstin; Baddoo, Melody; Concha, Monica; Flemington, Erik K

    2016-10-14

    Annotation of herpesvirus genomes has traditionally been undertaken through the detection of open reading frames and other genomic motifs, supplemented with sequencing of individual cDNAs. Second generation sequencing and high-density microarray studies have revealed vastly greater herpesvirus transcriptome complexity than is captured by existing annotation. The pervasive nature of overlapping transcription throughout herpesvirus genomes, however, poses substantial problems in resolving transcript structures using these methods alone. We present an approach that combines the unique attributes of Pacific Biosciences Iso-Seq long-read, Illumina short-read and deepCAGE (Cap Analysis of Gene Expression) sequencing to globally resolve polyadenylated isoform structures in replicating Epstein-Barr virus (EBV). Our method, Transcriptome Resolution through Integration of Multi-platform Data (TRIMD), identifies nearly 300 novel EBV transcripts, quadrupling the size of the annotated viral transcriptome. These findings illustrate an array of mechanisms through which EBV achieves functional diversity in its relatively small, compact genome including programmed alternative splicing (e.g. across the IR1 repeats), alternative promoter usage by LMP2 and other latency-associated transcripts, intergenic splicing at the BZLF2 locus, and antisense transcription and pervasive readthrough transcription throughout the genome.

  17. A hybrid approach to device integration on a genetic analysis platform

    Science.gov (United States)

    Brennan, Des; Jary, Dorothee; Kurg, Ants; Berik, Evgeny; Justice, John; Aherne, Margaret; Macek, Milan; Galvin, Paul

    2012-10-01

    Point-of-care (POC) systems require significant component integration to implement biochemical protocols associated with molecular diagnostic assays. Hybrid platforms where discrete components are combined in a single platform are a suitable approach to integration, where combining multiple device fabrication steps on a single substrate is not possible due to incompatible or costly fabrication steps. We integrate three devices each with a specific system functionality: (i) a silicon electro-wetting-on-dielectric (EWOD) device to move and mix sample and reagent droplets in an oil phase, (ii) a polymer microfluidic chip containing channels and reservoirs and (iii) an aqueous phase glass microarray for fluorescence microarray hybridization detection. The EWOD device offers the possibility of fully integrating on-chip sample preparation using nanolitre sample and reagent volumes. A key challenge is sample transfer from the oil phase EWOD device to the aqueous phase microarray for hybridization detection. The EWOD device, waveguide performance and functionality are maintained during the integration process. An on-chip biochemical protocol for arrayed primer extension (APEX) was implemented for single nucleotide polymorphism (SNiP) analysis. The prepared sample is aspirated from the EWOD oil phase to the aqueous phase microarray for hybridization. A bench-top instrumentation system was also developed around the integrated platform to drive the EWOD electrodes, implement APEX sample heating and image the microarray after hybridization.

  18. An Integrated Architecture for Engineering Problem Solving

    Science.gov (United States)

    1998-12-01

    62 Figure 33: Constrained attainable envisionment heuristic............................................63 Figure 34: Problem 4.21...collection of qualitative states and transitions that describe the behavior of the system is called an envisionment (de Kleer, 1977). There are two...types of envisionments commonly used for analyzing systems. An attainable envisionment describes all states that are reachable from a given initial

  19. Beyond Open Source Software: Solving Common Library Problems Using the Open Source Hardware Arduino Platform

    Directory of Open Access Journals (Sweden)

    Jonathan Younker

    2013-06-01

    Full Text Available Using open source hardware platforms like the Arduino, libraries have the ability to quickly and inexpensively prototype custom hardware solutions to common library problems. The authors present the Arduino environment, what it is, what it does, and how it was used at the James A. Gibson Library at Brock University to create a production portable barcode-scanning utility for in-house use statistics collection as well as a prototype for a service desk statistics tabulation program’s hardware interface.

  20. Model-to-model transformations of architecture descriptions of an integration platform

    Directory of Open Access Journals (Sweden)

    Tomasz Górski

    2014-04-01

    Full Text Available Model transformations play a key role in any software development project based on Mod-el-Driven Engineering (MDE principles. However, little attention has been paid to the ap-plication of MDE principles to automate the design of integration solutions. The aim of the paper is to present transformations of a model-to-model type, used to automate the process of integration platform's architecture description. The transformations have been designed to enable the generation of model elements, according to the '1+5' architectural views model adjusted to the integration solutions description. Design and implementation of transformations were performed in the IBM Rational Software Architect (RSA environ-ment. Authorial UML profiles: UML Profile for Integration Platform and UML Profile for Integration Flows have been used. The paper covers transformations between models in the following architectural views: Integrated Processes; Use Cases; Logical and Integrated Services. The transformations occur at the levels of business processes, requirements speci-fication and system design. Using the transformations, it is possible to generate models, diagrams, model elements and relationships between them. The complete environment has been obtained to automate architectural description of an integration solution. Transfor-mations ensure completeness of the architectural description and consistency of elements between models.

  1. Silicon-on-insulator-based complementary metal oxide semiconductor integrated optoelectronic platform for biomedical applications

    Science.gov (United States)

    Mujeeb-U-Rahman, Muhammad; Scherer, Axel

    2016-12-01

    Microscale optical devices enabled by wireless power harvesting and telemetry facilitate manipulation and testing of localized biological environments (e.g., neural recording and stimulation, targeted delivery to cancer cells). Design of integrated microsystems utilizing optical power harvesting and telemetry will enable complex in vivo applications like actuating a single nerve, without the difficult requirement of extreme optical focusing or use of nanoparticles. Silicon-on-insulator (SOI)-based platforms provide a very powerful architecture for such miniaturized platforms as these can be used to fabricate both optoelectronic and microelectronic devices on the same substrate. Near-infrared biomedical optics can be effectively utilized for optical power harvesting to generate optimal results compared with other methods (e.g., RF and acoustic) at submillimeter size scales intended for such designs. We present design and integration techniques of optical power harvesting structures with complementary metal oxide semiconductor platforms using SOI technologies along with monolithically integrated electronics. Such platforms can become the basis of optoelectronic biomedical systems including implants and lab-on-chip systems.

  2. An Integrative Platform for Three-dimensional Quantitative Analysis of Spatially Heterogeneous Metastasis Landscapes

    Science.gov (United States)

    Guldner, Ian H.; Yang, Lin; Cowdrick, Kyle R.; Wang, Qingfei; Alvarez Barrios, Wendy V.; Zellmer, Victoria R.; Zhang, Yizhe; Host, Misha; Liu, Fang; Chen, Danny Z.; Zhang, Siyuan

    2016-04-01

    Metastatic microenvironments are spatially and compositionally heterogeneous. This seemingly stochastic heterogeneity provides researchers great challenges in elucidating factors that determine metastatic outgrowth. Herein, we develop and implement an integrative platform that will enable researchers to obtain novel insights from intricate metastatic landscapes. Our two-segment platform begins with whole tissue clearing, staining, and imaging to globally delineate metastatic landscape heterogeneity with spatial and molecular resolution. The second segment of our platform applies our custom-developed SMART 3D (Spatial filtering-based background removal and Multi-chAnnel forest classifiers-based 3D ReconsTruction), a multi-faceted image analysis pipeline, permitting quantitative interrogation of functional implications of heterogeneous metastatic landscape constituents, from subcellular features to multicellular structures, within our large three-dimensional (3D) image datasets. Coupling whole tissue imaging of brain metastasis animal models with SMART 3D, we demonstrate the capability of our integrative pipeline to reveal and quantify volumetric and spatial aspects of brain metastasis landscapes, including diverse tumor morphology, heterogeneous proliferative indices, metastasis-associated astrogliosis, and vasculature spatial distribution. Collectively, our study demonstrates the utility of our novel integrative platform to reveal and quantify the global spatial and volumetric characteristics of the 3D metastatic landscape with unparalleled accuracy, opening new opportunities for unbiased investigation of novel biological phenomena in situ.

  3. An entity-based platform for the integration of social and scientific services

    DEFF Research Database (Denmark)

    Chenu-Abente, Ronald; Menendez Blanco, Maria; Giunchiglia, Fausto

    2012-01-01

    Over the last few years, several services and platforms for scientific production and dissemination have appeared (e.g. scholarly search engines, digital libraries, blogs, social networks, and conference management systems). Yet, these services are really fragmented and, in some cases, lack...... critical mass to become useful tools for the scientific community. Furthermore, most of them have failed to create a virtual environment where users' needs and activities are supported. In this paper, we present an entity-based platform aimed at integrating papers, persons, events and the services...

  4. Nucleic Acid-based Detection of Bacterial Pathogens Using Integrated Microfluidic Platform Systems

    Directory of Open Access Journals (Sweden)

    Carl A. Batt

    2009-05-01

    Full Text Available The advent of nucleic acid-based pathogen detection methods offers increased sensitivity and specificity over traditional microbiological techniques, driving the development of portable, integrated biosensors. The miniaturization and automation of integrated detection systems presents a significant advantage for rapid, portable field-based testing. In this review, we highlight current developments and directions in nucleic acid-based micro total analysis systems for the detection of bacterial pathogens. Recent progress in the miniaturization of microfluidic processing steps for cell capture, DNA extraction and purification, polymerase chain reaction, and product detection are detailed. Discussions include strategies and challenges for implementation of an integrated portable platform.

  5. VR-Cluster: Dynamic Migration for Resource Fragmentation Problem in Virtual Router Platform

    Directory of Open Access Journals (Sweden)

    Xianming Gao

    2016-01-01

    Full Text Available Network virtualization technology is regarded as one of gradual schemes to network architecture evolution. With the development of network functions virtualization, operators make lots of effort to achieve router virtualization by using general servers. In order to ensure high performance, virtual router platform usually adopts a cluster of general servers, which can be also regarded as a special cloud computing environment. However, due to frequent creation and deletion of router instances, it may generate lots of resource fragmentation to prevent platform from establishing new router instances. In order to solve “resource fragmentation problem,” we firstly propose VR-Cluster, which introduces two extra function planes including switching plane and resource management plane. Switching plane is mainly used to support seamless migration of router instances without packet loss; resource management plane can dynamically move router instances from one server to another server by using VR-mapping algorithms. Besides, three VR-mapping algorithms including first-fit mapping algorithm, best-fit mapping algorithm, and worst-fit mapping algorithm are proposed based on VR-Cluster. At last, we establish VR-Cluster protosystem by using general X86 servers, evaluate its migration time, and further analyze advantages and disadvantages of our proposed VR-mapping algorithms to solve resource fragmentation problem.

  6. On the performance of exponential integrators for problems in magnetohydrodynamics

    CERN Document Server

    Einkemmer, Lukas; Loffeld, John

    2016-01-01

    Exponential integrators have been introduced as an efficient alternative to explicit and implicit methods for integrating large stiff systems of differential equations. Over the past decades these methods have been studied theoretically and their performance was evaluated using a range of test problems. While the results of these investigations showed that exponential integrators can provide significant computational savings, the research on validating this hypothesis for large scale systems and understanding what classes of problems can particularly benefit from the use of the new techniques is in its initial stages. Resistive magnetohydrodynamic (MHD) modeling is widely used in studying large scale behavior of laboratory and astrophysical plasmas. In many problems numerical solution of MHD equations is a challenging task due to the temporal stiffness of this system in the parameter regimes of interest. In this paper we evaluate the performance of exponential integrators on large MHD problems and compare the...

  7. APPLICATION OF BOUNDARY INTEGRAL EQUATION METHOD FOR THERMOELASTICITY PROBLEMS

    Directory of Open Access Journals (Sweden)

    Vorona Yu.V.

    2015-12-01

    Full Text Available Boundary Integral Equation Method is used for solving analytically the problems of coupled thermoelastic spherical wave propagation. The resulting mathematical expressions coincide with the solutions obtained in a conventional manner.

  8. Integrated Tourism E-Commerce Platform for Scenery Administration Bureau, Travel Agency and Tourist

    Science.gov (United States)

    Liang, Zhixue; Wang, Shui

    Collaboration among multiple travel agencies and with scenery administration bureaus is vital for small or medium sized travel companies to succeed in the fierce competition of the tourism industry; business processes such as regrouping individual travelers between different agencies prove to be difficult and unpleasant user experience; tourists want to be more informed and have more initiative. To address these issues, proposes an integrated tourism e-commerce platform for travel agencies and scenery administration bureaus as well as tourists to interact in a more smooth way; this platform is constructed upon J2EE framework, provides online collaboration & coordination for companies and information services (such as self-navigation using Google Map etc) for tourists. A running implementation of this platform has been put into real business for a small travel company.

  9. Multi-octave spectral beam combiner on ultra-broadband photonic integrated circuit platform.

    Science.gov (United States)

    Stanton, Eric J; Heck, Martijn J R; Bovington, Jock; Spott, Alexander; Bowers, John E

    2015-05-01

    We present the design of a novel platform that is able to combine optical frequency bands spanning 4.2 octaves from ultraviolet to mid-wave infrared into a single, low M2 output waveguide. We present the design and realization of a key component in this platform that combines the wavelength bands of 350 nm - 1500 nm and 1500 nm - 6500 nm with demonstrated efficiency greater than 90% in near-infrared and mid-wave infrared. The multi-octave spectral beam combiner concept is realized using an integrated platform with silicon nitride waveguides and silicon waveguides. Simulated bandwidth is shown to be over four octaves, and measured bandwidth is shown over two octaves, limited by the availability of sources.

  10. 一个化工过程运行系统的多层信息集成平台%A Multi-layer Information Integration Platform for Chemical Process Operation Systems

    Institute of Scientific and Technical Information of China (English)

    钱宇; 李荷华; 李秀喜

    2004-01-01

    In the process industry, automation and process control systems are widely implemented, information integration is however far away from satisfactory. It remains a hard job for senior managers to make decisions based on the plant-wide real-time integrated information. This paper proposes a multi-layer information integration platform. In the data integration level, the standard for the exchange of product (STEP) and the extensible markup language (XML) are used to unify these data of the chemical process. In the model integration level, the models are integrated by using the neutral model repository and CAPE-OPEN. In the integration of process task, the common object request broker architecture (CORBA) is used as the communication mediator. The XML is taken as the data standard. A uniform information platform is thus constructed and realized. The proposed information integration platform is satisfactorily implemented to solve the Tennessee Eastman (TE) problem.

  11. Integrated method to optimize well connection and platform placement on a multi-reservoir scenario

    Energy Technology Data Exchange (ETDEWEB)

    Sousa, Sergio Henrique Guerra de; Madeira, Marcelo Gomes; Franca, Martha Salles [Halliburton, Rio de Janeiro, RJ (Brazil); Mota, Rosane Oliveira; Silva, Edilon Ribeiro da; King, Vanessa Pereira Spear [Petroleo Brasileiro S.A. (PETROBRAS), Rio de Janeiro, RJ (Brazil)

    2012-07-01

    This paper describes a workflow created to optimize the platform placement and well-platform connections on a multi reservoir scenario using an integrated reservoir simulator paired with an optimization engine. The proposed methodology describes how a new platform, being incorporated into a pre-existing asset, can be better used to develop newly-discovered fields, while helping increase the production of existing fields by sharing their production load. The sharing of production facilities is highly important in Brazilian offshore assets because of their high price (a few billion dollars per facility) and the fact that total production is usually limited to the installed capacity of liquid processing, which is an important constraint on high water-cut well production rates typical to this region. The case study asset used to present the workflow consists of two deep water oil fields, each one developed by its own production platform, and a newly-discovered field with strong aquifer support that will be entirely developed with a new production platform. Because this new field should not include injector wells owing to the strong aquifer presence, the idea is to consider reconnecting existing wells from the two pre-existing fields to better use the production resources. In this scenario, the platform location is an important optimization issue, as a balance between supporting the production of the planned wells on the new field and the production of re-routed wells from the existing fields must be reached to achieve improved overall asset production. If the new platform is too far away from any interconnected production well, pressure-drop issues along the pipeline might actually decrease production from the existing fields rather than augment it. The main contribution of this work is giving the reader insights on how to model and optimize these complex decisions to generate high-quality scenarios. (author)

  12. An exploration of knowledge integration problems in interdisciplinary research teams

    NARCIS (Netherlands)

    Bayerl, P.S.; Steinheider, B.

    2009-01-01

    The integration of function-specific expertise into a shared knowledge base is a crucial, but complex process for success in interdisciplinary teams. This paper presents an empirically derived typology of knowledge integration problems and links their occurrence to degree of heterogeneity and presen

  13. Smooth integral sliding mode controller for the position control of Stewart platform.

    Science.gov (United States)

    Kumar P, Ramesh; Chalanga, Asif; Bandyopadhyay, B

    2015-09-01

    This paper proposes the application of a new algorithm for the position control of a Stewart platform. The conventional integral sliding mode controller is a combination of nominal control and discontinuous feedback control hence the overall control is discontinuous in nature. The discontinuity in the feedback control is undesirable for practical applications due to chattering which causes the wear and tear of the mechanical actuators. In this paper the existing integral sliding mode control law for systems with matched disturbances is modified by replacing the discontinuous part by a continuous modified twisting control. This proposed controller is continuous in nature due to the combinations of two continuous controls. The desired position of the platform has been achieved using the proposed controller even in the presence of matched disturbances. The effectiveness of the proposed controller has been proved with the simulation results.

  14. Integrating packing and distribution problems and optimization through mathematical programming

    Directory of Open Access Journals (Sweden)

    Fabio Miguel

    2016-06-01

    Full Text Available This paper analyzes the integration of two combinatorial problems that frequently arise in production and distribution systems. One is the Bin Packing Problem (BPP problem, which involves finding an ordering of some objects of different volumes to be packed into the minimal number of containers of the same or different size. An optimal solution to this NP-Hard problem can be approximated by means of meta-heuristic methods. On the other hand, we consider the Capacitated Vehicle Routing Problem with Time Windows (CVRPTW, which is a variant of the Travelling Salesman Problem (again a NP-Hard problem with extra constraints. Here we model those two problems in a single framework and use an evolutionary meta-heuristics to solve them jointly. Furthermore, we use data from a real world company as a test-bed for the method introduced here.

  15. Integration Platform As Central Service Of Data Replication In Distributed Medical System

    Directory of Open Access Journals (Sweden)

    Wiesław Wajs

    2007-01-01

    Full Text Available The paper presents the application of Java Integration Platform (JIP to data replicationin the distributed medical system. After an introductory part on the medical system’s architecture,the focus shifts to a comparison of different approaches that exist with regard totransferring data between the system’s components. A description is given of the historicaldata processing and of the whole area of the JIP application to the medical system.

  16. Integrating cell on chip—Novel waveguide platform employing ultra-long optical paths

    Science.gov (United States)

    Fohrmann, Lena Simone; Sommer, Gerrit; Pitruzzello, Giampaolo; Krauss, Thomas F.; Petrov, Alexander Yu.; Eich, Manfred

    2017-09-01

    Optical waveguides are the most fundamental building blocks of integrated optical circuits. They are extremely well understood, yet there is still room for surprises. Here, we introduce a novel 2D waveguide platform which affords a strong interaction of the evanescent tail of a guided optical wave with an external medium while only employing a very small geometrical footprint. The key feature of the platform is its ability to integrate the ultra-long path lengths by combining low propagation losses in a silicon slab with multiple reflections of the guided wave from photonic crystal (PhC) mirrors. With a reflectivity of 99.1% of our tailored PhC-mirrors, we achieve interaction paths of 25 cm within an area of less than 10 mm2. This corresponds to 0.17 dB/cm effective propagation which is much lower than the state-of-the-art loss of approximately 1 dB/cm of single mode silicon channel waveguides. In contrast to conventional waveguides, our 2D-approach leads to a decay of the guided wave power only inversely proportional to the optical path length. This entirely different characteristic is the major advantage of the 2D integrating cell waveguide platform over the conventional channel waveguide concepts that obey the Beer-Lambert law.

  17. An Integrated System for Disabled People Developed with the Agent Platform PANGEA

    Directory of Open Access Journals (Sweden)

    Carolina ZATO

    2013-11-01

    Full Text Available New trends in multi-agent systems call for self-adaptation and high dynamics, hence the new model of open MAS or virtual organization of agents. However, as existing agent platforms are not yet equipped to support this behavior, it is necessary to create new systems and mechanisms to facilitate the development of these new architectures. This article presents PANGEA, an agent platform to develop open multi-agent systems, specifically those including organizational aspects such as virtual agent organizations. The platform allows the integral management of organizations and offers tools to the end user. Additionally, it includes a communication protocol based on the IRC standard, which facilitates implementation and remains robust even with a large number of connections. The introduction of a CommunicationAgent and a Sniffer make it possible to offer Web Services for the distributed control of interaction. In order to test PANGEA, an integral system was developed to help the disabled, gathering a set of easily deployable and integrated services under a single architecture.

  18. The Riesz-Radon-Frechet problem of characterization of integrals

    Energy Technology Data Exchange (ETDEWEB)

    Zakharov, Valerii K; Rodionov, Timofey V [M. V. Lomonosov Moscow State University, Moscow (Russian Federation); Mikhalev, Aleksandr V [Centre for New Information Technologies, Moscow State University (Russian Federation)

    2010-11-16

    This paper is a survey of results on characterizing integrals as linear functionals. It starts from the familiar result of F. Riesz (1909) on integral representation of bounded linear functionals by Riemann-Stieltjes integrals on a closed interval, and is directly connected with Radon's famous theorem (1913) on integral representation of bounded linear functionals by Lebesgue integrals on a compact subset of R{sup n}. After the works of Radon, Frechet, and Hausdorff, the problem of characterizing integrals as linear functionals took the particular form of the problem of extending Radon's theorem from R{sup n} to more general topological spaces with Radon measures. This problem turned out to be difficult, and its solution has a long and rich history. Therefore, it is natural to call it the Riesz-Radon-Frechet problem of characterization of integrals. Important stages of its solution are associated with such eminent mathematicians as Banach (1937-1938), Saks (1937-1938), Kakutani (1941), Halmos (1950), Hewitt (1952), Edwards (1953), Prokhorov (1956), Bourbaki (1969), and others. Essential ideas and technical tools were developed by A.D. Alexandrov (1940-1943), Stone (1948-1949), Fremlin (1974), and others. Most of this paper is devoted to the contemporary stage of the solution of the problem, connected with papers of Koenig (1995-2008), Zakharov and Mikhalev (1997-2009), and others. The general solution of the problem is presented in the form of a parametric theorem on characterization of integrals which directly implies the characterization theorems of the indicated authors. Bibliography: 60 titles.

  19. SERVIR-Africa: Developing an Integrated Platform for Floods Disaster Management in Africa

    Science.gov (United States)

    Macharia, Daniel; Korme, Tesfaye; Policelli, Fritz; Irwin, Dan; Adler, Bob; Hong, Yang

    2010-01-01

    SERVIR-Africa is an ambitious regional visualization and monitoring system that integrates remotely sensed data with predictive models and field-based data to monitor ecological processes and respond to natural disasters. It aims addressing societal benefits including floods and turning data into actionable information for decision-makers. Floods are exogenous disasters that affect many parts of Africa, probably second only to drought in terms of social-economic losses. This paper looks at SERVIR-Africa's approach to floods disaster management through establishment of an integrated platform, floods prediction models, post-event flood mapping and monitoring as well as flood maps dissemination in support of flood disaster management.

  20. A multilevel finite element method for Fredholm integral eigenvalue problems

    Science.gov (United States)

    Xie, Hehu; Zhou, Tao

    2015-12-01

    In this work, we proposed a multigrid finite element (MFE) method for solving the Fredholm integral eigenvalue problems. The main motivation for such studies is to compute the Karhunen-Loève expansions of random fields, which play an important role in the applications of uncertainty quantification. In our MFE framework, solving the eigenvalue problem is converted to doing a series of integral iterations and eigenvalue solving in the coarsest mesh. Then, any existing efficient integration scheme can be used for the associated integration process. The error estimates are provided, and the computational complexity is analyzed. It is noticed that the total computational work of our method is comparable with a single integration step in the finest mesh. Several numerical experiments are presented to validate the efficiency of the proposed numerical method.

  1. p-medicine: a medical informatics platform for integrated large scale heterogeneous patient data

    OpenAIRE

    Marés, J.; Shamardin, L.; Weiler, G.; Anguita Sanchez, Alberto; Sfakianakis, S.; Neri, E.; Zasada, S. J.; Graf, Norbert; Coveney, P. V.

    2014-01-01

    Secure access to patient data is becoming of increasing importance, as medical informatics grows in significance, to both assist with population health studies, and patient specific medicine in support of treatment. However, assembling the many different types of data emanating from the clinic is in itself a difficulty, and doing so across national borders compounds the problem. In this paper we present our solution: an easy to use distributed informatics platform embedding a state of the art...

  2. Supporting Medical Research on Chronic Diseases using Integrated Health Monitoring Platform

    OpenAIRE

    Krukowski, Artur; Vogiatzaki, Emmanouela; Charalambides, Marios; Chouchoulis, Michalis

    2014-01-01

    This paper describes combined experiences in developing e-Health platforms and services with respect of supporting medical research into the causes and relationships among physiological parameters and health problems concerning different chronic diseases, from cardiovascular to stroke, epilepsy, and others. The Personal Health Records (PHR) is presented as new technological approaches aimed at standardizing electronic management of medical information between the patient and its physicians, a...

  3. Insight: An ontology-based integrated database and analysis platform for epilepsy self-management research.

    Science.gov (United States)

    Sahoo, Satya S; Ramesh, Priya; Welter, Elisabeth; Bukach, Ashley; Valdez, Joshua; Tatsuoka, Curtis; Bamps, Yvan; Stoll, Shelley; Jobst, Barbara C; Sajatovic, Martha

    2016-10-01

    We present Insight as an integrated database and analysis platform for epilepsy self-management research as part of the national Managing Epilepsy Well Network. Insight is the only available informatics platform for accessing and analyzing integrated data from multiple epilepsy self-management research studies with several new data management features and user-friendly functionalities. The features of Insight include, (1) use of Common Data Elements defined by members of the research community and an epilepsy domain ontology for data integration and querying, (2) visualization tools to support real time exploration of data distribution across research studies, and (3) an interactive visual query interface for provenance-enabled research cohort identification. The Insight platform contains data from five completed epilepsy self-management research studies covering various categories of data, including depression, quality of life, seizure frequency, and socioeconomic information. The data represents over 400 participants with 7552 data points. The Insight data exploration and cohort identification query interface has been developed using Ruby on Rails Web technology and open source Web Ontology Language Application Programming Interface to support ontology-based reasoning. We have developed an efficient ontology management module that automatically updates the ontology mappings each time a new version of the Epilepsy and Seizure Ontology is released. The Insight platform features a Role-based Access Control module to authenticate and effectively manage user access to different research studies. User access to Insight is managed by the Managing Epilepsy Well Network database steering committee consisting of representatives of all current collaborating centers of the Managing Epilepsy Well Network. New research studies are being continuously added to the Insight database and the size as well as the unique coverage of the dataset allows investigators to conduct

  4. An exactly conservative integrator for the n-body problem

    Energy Technology Data Exchange (ETDEWEB)

    Kotovych, Oksana; Bowman, John C. [Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB (Canada)]. E-mail: bowman@math.ualberta.ca

    2002-09-20

    The two-dimensional n-body problem of classical mechanics is a non-integrable Hamiltonian system for n>2. Traditional numerical integration algorithms, which are polynomials in the time step, typically lead to systematic drifts in the computed value of the total energy and angular momentum. Even symplectic integration schemes exactly conserve only an approximate Hamiltonian. We present an algorithm that conserves the true Hamiltonian and the total angular momentum to machine precision. It is derived by applying conventional discretizations in a new space obtained by transformation of the dependent variables. We develop the method first for the restricted circular three-body problem, then for the general two-dimensional three-body problem and finally for the planar n-body problem. Jacobi coordinates are used to reduce the two-dimensional n-body problem to an (n-1)-body problem that incorporates the constant linear momentum and centre-of-mass constraints. For a four-body choreography, we find that a larger time step can be used with our conservative algorithm than with symplectic and conventional integrators. (author)

  5. A platform for analysis of nanoscale liquids with an integrated sensor array based on 2-d material

    CERN Document Server

    Engel, M; Neumann, R F; Giro, R; Feger, C; Avouris, P; Steiner, M

    2016-01-01

    Analysis of nanoscale liquids, including wetting and flow phenomena, is a scientific challenge with far reaching implications for industrial technologies. We report the conception, development, and application of an integrated platform for the experimental characterization of liquids at the nanometer scale. The platform combines the sensing functionalities of an integrated, two-dimensional electronic device array with in situ application of highly sensitive optical micro-spectroscopy and atomic force microscopy. We demonstrate the performance capabilities of the platform with an embodiment based on an array of integrated, optically transparent graphene sensors. The application of electronic and optical sensing in the platform allows for differentiating between liquids electronically, for determining a liquid's molecular fingerprint, and for monitoring surface wetting dynamics in real time. In order to explore the platform's sensitivity limits, we record topographies and optical spectra of individual, spatiall...

  6. Integration of protein processing steps on a droplet microfluidics platform for MALDI-MS analysis.

    Science.gov (United States)

    Chatterjee, Debalina; Ytterberg, A Jimmy; Son, Sang Uk; Loo, Joseph A; Garrell, Robin L

    2010-03-01

    A droplet-based (digital) microfluidics platform has been developed to prepare and purify protein samples for measurement by matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS). Liquid droplets are moved in air by sequentially applying an electric potential to an array of electrodes patterned beneath a hydrophobic dielectric layer. We show that a complete integrated sequence of protein processing steps can be performed on this platform, including disulfide reduction, alkylation, and enzymatic digestion, followed by cocrystallization with a MALDI matrix and analysis of the sample in situ by MALDI-MS. Proteins carbonic anhydrase, cytochrome c, and ubiquitin were used to demonstrate the digestion and postdigestion steps; insulin, serum albumin, and lysozyme were used to illustrate the complete sequence of protein processing steps available with the platform. Several functional improvements in the platform are reported, notably, the incorporation of acetonitrile in the protein droplets to facilitate movement, and patterning the device surfaces to optimize sample crystallization. The method is fast, simple, repeatable, and results in lower reagent consumption and sample loss than conventional techniques for proteomics sample preparation.

  7. OpenDrop: An Integrated Do-It-Yourself Platform for Personal Use of Biochips

    Directory of Open Access Journals (Sweden)

    Mirela Alistar

    2017-05-01

    Full Text Available Biochips, or digital labs-on-chip, are developed with the purpose of being used by laboratory technicians or biologists in laboratories or clinics. In this article, we expand this vision with the goal of enabling everyone, regardless of their expertise, to use biochips for their own personal purposes. We developed OpenDrop, an integrated electromicrofluidic platform that allows users to develop and program their own bio-applications. We address the main challenges that users may encounter: accessibility, bio-protocol design and interaction with microfluidics. OpenDrop consists of a do-it-yourself biochip, an automated software tool with visual interface and a detailed technique for at-home operations of microfluidics. We report on two years of use of OpenDrop, released as an open-source platform. Our platform attracted a highly diverse user base with participants originating from maker communities, academia and industry. Our findings show that 47% of attempts to replicate OpenDrop were successful, the main challenge remaining the assembly of the device. In terms of usability, the users managed to operate their platforms at home and are working on designing their own bio-applications. Our work provides a step towards a future in which everyone will be able to create microfluidic devices for their personal applications, thereby democratizing parts of health care.

  8. Design of the Hospital Integrated Information Management System Based on Cloud Platform

    OpenAIRE

    Aijing, L; Jin, Y.

    2015-01-01

    At present, the outdated information management style cannot meet the needs of hospital management, and has become the bottleneck of hospital's management and development. In order to improve the integrated management of information, hospitals have increased their investment in integrated information management systems. On account of the lack of reasonable and scientific design, some hospital integrated information management systems have common problems, such as unfriendly interface, poor po...

  9. Information Integration Platform for Patient-Centric Healthcare Services: Design, Prototype and Dependability Aspects

    Directory of Open Access Journals (Sweden)

    Yohanes Baptista Dafferianto Trinugroho

    2014-03-01

    Full Text Available Technology innovations have pushed today’s healthcare sector to an unprecedented new level. Various portable and wearable medical and fitness devices are being sold in the consumer market to provide the self-empowerment of a healthier lifestyle to society. Many vendors provide additional cloud-based services for devices they manufacture, enabling the users to visualize, store and share the gathered information through the Internet. However, most of these services are integrated with the devices in a closed “silo” manner, where the devices can only be used with the provided services. To tackle this issue, an information integration platform (IIP has been developed to support communications between devices and Internet-based services in an event-driven fashion by adopting service-oriented architecture (SOA principles and a publish/subscribe messaging pattern. It follows the “Internet of Things” (IoT idea of connecting everyday objects to various networks and to enable the dissemination of the gathered information to the global information space through the Internet. A patient-centric healthcare service environment is chosen as the target scenario for the deployment of the platform, as this is a domain where IoT can have a direct positive impact on quality of life enhancement. This paper describes the developed platform, with emphasis on dependability aspects, including availability, scalability and security.

  10. MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data

    Directory of Open Access Journals (Sweden)

    Ng Raymond T

    2008-05-01

    Full Text Available Abstract Background Recent advances in global genomic profiling methodologies have enabled multi-dimensional characterization of biological systems. Complete analysis of these genomic profiles require an in depth look at parallel profiles of segmental DNA copy number status, DNA methylation state, single nucleotide polymorphisms, as well as gene expression profiles. Due to the differences in data types it is difficult to conduct parallel analysis of multiple datasets from diverse platforms. Results To address this issue, we have developed an integrative genomic analysis platform MD-SeeGH, a software tool that allows users to rapidly and directly analyze genomic datasets spanning multiple genomic experiments. With MD-SeeGH, users have the flexibility to easily update datasets in accordance with new genomic builds, make a quality assessment of data using the filtering features, and identify genetic alterations within single or across multiple experiments. Multiple sample analysis in MD-SeeGH allows users to compare profiles from many experiments alongside tracks containing detailed localized gene information, microRNA, CpG islands, and copy number variations. Conclusion MD-SeeGH is a new platform for the integrative analysis of diverse microarray data, facilitating multiple profile analyses and group comparisons.

  11. AlGaN/AlN integrated photonics platform for the ultraviolet and visible spectral range.

    Science.gov (United States)

    Soltani, Mohammad; Soref, Richard; Palacios, Tomas; Englund, Dirk

    2016-10-31

    We analyze a photonic integrated circuit (PIC) platform comprised of a crystalline AlxGa1-xN optical guiding layer on an AlN substrate for the ultraviolet to visible (UV-vis) wavelength range. An Al composition of x~0.65 provides a refractive index difference of ~0.1 between AlxGa1-xN and AlN, and a small lattice mismatch (xGa1-xN/AlN interface. This small refractive index difference is beneficial at shorter wavelengths to avoid extra-small waveguide dimensions. The platform enables compact waveguides and bends with high field confinement in the wavelength range from 700 nm down to 300 nm (and potentially lower) with waveguide cross-section dimensions comparable to those used for telecom PICs such as silicon and silicon nitride waveguides, allowing for well-established optical lithography. This platform can potentially enable cost-effective, manufacturable, monolithic UV-vis photonic integrated circuits.

  12. Adapting Cell-Based Assays to the High Throughput Screening Platform: Problems Encountered and Lessons Learned.

    Science.gov (United States)

    Maddox, Clinton B; Rasmussen, Lynn; White, E Lucile

    2008-06-01

    In recent years, cell-based phenotypic assays have emerged as an effective and robust addition to the array of assay technologies available for drug discovery in the high throughput screening arena. Previously, biochemical target-based assays have been the technology of choice. With the emergence of stem cells as a basis for a new screening technology, it is important to keep in mind the lessons that have been learned from the adaptation of existing stable cell lines onto the high throughput screening drug discovery platform, with special consideration being given to assay miniaturization, liquid handling complications and instrument-introduced artifacts. We present an overview of the problems encountered with the implementation of multiple cell-based assays at the High Throughput Screening Center at Southern Research Institute as well as empirically defined effective solutions to these problems. These include examples of artifacts induced by temperature differences throughout the screening campaign, cell plating conditions including the effect of room temperature incubation on assay consistency, DMSO carry-over, and incubator induced artifacts.

  13. Jacobi-Integral Method For Two-Body Problem

    Science.gov (United States)

    Bond, Victor R.; Gottlieb, Robert G.; Fraietta, Michael F.

    1991-01-01

    Jacobi-integral method enables efficient, accurate computation of trajectory of natural satellite or spacecraft perturbed by component of gravitational potential depending explicitly on both position and time. Instead of total energy, Jacobi integral, which is energylike constant of motion in this case, embedded in Newtonian differential equations of motion. Trajectories computed in fewer steps. With modifications, applicable to such terrestrial problems as motions of rotors and of beams of electrically charged particles in changing electrical and magnetic fields.

  14. Requirements Analyses Integrating Goals and Problem Analysis Techniques

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    One of the difficulties that goal-oriented requirements analyses encounters is that the efficiency of the goal refinement is based on the analysts' subjective knowledge and experience. To improve the efficiency of the requirements eiicitation process, engineers need approaches with more systemized analysis techniques. This paper integrates the goal-oriented requirements language i* with concepts from a structured problem analysis notation, problem frames (PF). The PF approach analyzes software design as a contextualized problem which has to respond to constraints imposed by the environment. The proposed approach is illustrated using the meeting scheduler exemplar. Results show that integration of the goal and the problem analysis enables simultaneous consideration of the designer's subjective intentions and the physical environmental constraints.

  15. An intermittent rocking platform for integrated expansion and differentiation of human pluripotent stem cells to cardiomyocytes in suspended microcarrier cultures

    Directory of Open Access Journals (Sweden)

    Sherwin Ting

    2014-09-01

    In conclusion, we have developed a simple robust and scalable platform that integrates both hESC expansion and CM differentiation in one unit process which is capable of meeting the need for large amounts of CMs.

  16. Integrated Platform for Expedited Synthesis-Purification-Testing of Small Molecule Libraries.

    Science.gov (United States)

    Baranczak, Aleksandra; Tu, Noah P; Marjanovic, Jasmina; Searle, Philip A; Vasudevan, Anil; Djuric, Stevan W

    2017-04-13

    The productivity of medicinal chemistry programs can be significantly increased through the introduction of automation, leading to shortened discovery cycle times. Herein, we describe a platform that consolidates synthesis, purification, quantitation, dissolution, and testing of small molecule libraries. The system was validated through the synthesis and testing of two libraries of binders of polycomb protein EED, and excellent correlation of obtained data with results generated through conventional approaches was observed. The fully automated and integrated platform enables batch-supported compound synthesis based on a broad array of chemical transformations with testing in a variety of biochemical assay formats. A library turnaround time of between 24 and 36 h was achieved, and notably, each library synthesis produces sufficient amounts of compounds for further evaluation in secondary assays thereby contributing significantly to the shortening of medicinal chemistry discovery cycles.

  17. Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes.

    Science.gov (United States)

    Margaria, Tiziana; Kubczak, Christian; Steffen, Bernhard

    2008-04-25

    With Bio-jETI, we introduce a service platform for interdisciplinary work on biological application domains and illustrate its use in a concrete application concerning statistical data processing in R and xcms for an LC/MS analysis of FAAH gene knockout. Bio-jETI uses the jABC environment for service-oriented modeling and design as a graphical process modeling tool and the jETI service integration technology for remote tool execution. As a service definition and provisioning platform, Bio-jETI has the potential to become a core technology in interdisciplinary service orchestration and technology transfer. Domain experts, like biologists not trained in computer science, directly define complex service orchestrations as process models and use efficient and complex bioinformatics tools in a simple and intuitive way.

  18. Integrated CAD/CAM: Problems, prognosis, and role of IPAD

    Science.gov (United States)

    Nilson, E. N.

    1980-01-01

    Major technology problems impede the development and evolution of totally integrated interactive CAD/CAM systems. IPAD is playing an important role in the identification of these problems and is contributing significantly to their solution. It is the purpose of this presentation to examine some of these issues, look at the prognosis of obtaining effective solutions, and point up some of the past and expected contributions of IPAD to this technology.

  19. An Integrated approach to the Space Situational Awareness Problem

    Science.gov (United States)

    2016-12-15

    AFRL-AFOSR-VA-TR-2016-0377 An Integrated approach to the Space Situational Awareness Problem Suman Chakravorty TEXAS ENGINEERING EXPERIMENT STATION...including suggestions for reducing the burden, to the Department of Defense, Executive Service Directorate (0704-0188). Respondents should be aware that...Situational Awareness Problem 5a. CONTRACT NUMBER 5b. GRANT NUMBER FA9550-13-1-0074 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Dr. Suman Chakravorty 5d

  20. Solution of direct kinematic problem for Stewart-Gough platform with the use of analytical equation of plane

    Directory of Open Access Journals (Sweden)

    A. L. Lapikov

    2014-01-01

    Full Text Available The paper concerns the solution of direct kinematic problem for the Stewart-Gough platform of the type 6-3. The article represents a detailed analysis of methods of direct kinematic problem solution for platform mechanisms based on the parallel structures. The complexity of the problem solution is estimated for the mechanisms of parallel kinematics in comparison with the classic manipulators, characterized by the open kinematic chain.The method for the solution of this problem is suggested. It consists in setting up the correspondence between the functional dependence of Cartesian coordinates and the orientation of the moving platform centre on the values of generalized coordinates of the manipulator, which may be represented, in the case of platform manipulators, by the lengths of extensible arms to connect the foundation and the moving platform of the manipulator. The method is constructed in such a way that the solution of the direct kinematic problem reduces to solution of the analytical equation of plane where the moving platform is situated. The equation of the required plane is built according to three points which in this case are attachment points of moving platform joints. To define joints coordinates values it is necessary to generate a system of nine nonlinear equations. It ought to be noted that in generating a system of equation are used the equations with the same type of nonlinearity. The physical meaning of all nine equations of the system is Euclidean distance between the points of the manipulator. The location and orientation of the moving platform is represented as a homogeneous transformation matrix. The components of translation and rotation of this matrix can be defined through the required plane.The obtained theoretical results are supposed to be used in the decision support system during the complex research of multi-sectional manipulators of parallel kinematics to describe the geometrically similar 3D-prototype of the

  1. Integrated opto-microfluidics platforms in lithium niobate crystals for sensing applications

    Science.gov (United States)

    Bettella, G.; Pozza, G.; Zaltron, A.; Ciampolillo, M. V.; Argiolas, N.; Sada, C.; Chauvet, M.; Guichardaz, B.

    2015-02-01

    In micro-analytical chemistry and biology applications, droplet microfluidic technology holds great promise for efficient lab-on-chip systems where higher levels of integration of different stages on the same platform is constantly addressed. The possibility of integration of opto-microfluidic functionalities in lithium niobate (LiNbO3) crystals is presented. Microfluidic channels were directly engraved in a LiNbO3 substrate by precision saw cutting, and illuminated by optical waveguides integrated on the same substrate. The morphological characterization of the microfluidic channel and the optical response of the coupled optical waveguide were tested. In particular, the results indicate that the optical properties of the constituents dispersed in the fluid flowing in the microfluidic channel can be monitored in situ, opening to new compact optical sensor prototypes based on droplets generation and optical analysis of the relative constituents.

  2. A microsystem integration platform dedicated to build multi-chip-neural interfaces.

    Science.gov (United States)

    Ayoub, Amer E; Gosselin, Benoit; Sawan, Mohamad

    2007-01-01

    In this paper, we present an electrical discharge machining (EDM) technique associated with electrochemical steps to construct an appropriate biological interface to neural tissues. The presented microprobe design permits to short the time of production compared to available techniques, while improving the integrity of the electrodes. In addition, we are using a 3D approach to create compact and independent microsystem integration platefrom incorporating array of electrodes and signal processing chips. System-in-package and die-stacking are used to connect the integrated circuits and the array of electrodes on the platform. This approach enables to build a device that will fit in a volume smaller than 1.7 x 1.7 x 3.0 mm(3). This demonstrates the possibility of creating small devices that are suitable to fit in restricted areas for interfacing the brain.

  3. Supporting Building Portfolio Investment and Policy Decision Making through an Integrated Building Utility Data Platform

    Energy Technology Data Exchange (ETDEWEB)

    Aziz, Azizan [Carnegie Mellon Univ., Pittsburgh, PA (United States); Lasternas, Bertrand [Carnegie Mellon Univ., Pittsburgh, PA (United States); Alschuler, Elena [US DOE; View Inc; Loftness, Vivian [Carnegie Mellon Univ., Pittsburgh, PA (United States); Wang, Haopeng [Carnegie Mellon Univ., Pittsburgh, PA (United States); Mo, Yunjeong [Carnegie Mellon Univ., Pittsburgh, PA (United States); Wang, Ting [Carnegie Mellon Univ., Pittsburgh, PA (United States); Zhang, Chenlu [Carnegie Mellon Univ., Pittsburgh, PA (United States); Sharma, Shilpi [Carnegie Mellon; Stevens, Ivana [Carnegie Mellon Univ., Pittsburgh, PA (United States)

    2016-03-18

    The American Recovery and Reinvestment Act stimulus funding of 2009 for smart grid projects resulted in the tripling of smart meters deployment. In 2012, the Green Button initiative provided utility customers with access to their real-time1 energy usage. The availability of finely granular data provides an enormous potential for energy data analytics and energy benchmarking. The sheer volume of time-series utility data from a large number of buildings also poses challenges in data collection, quality control, and database management for rigorous and meaningful analyses. In this paper, we will describe a building portfolio-level data analytics tool for operational optimization, business investment and policy assessment using 15-minute to monthly intervals utility data. The analytics tool is developed on top of the U.S. Department of Energy’s Standard Energy Efficiency Data (SEED) platform, an open source software application that manages energy performance data of large groups of buildings. To support the significantly large volume of granular interval data, we integrated a parallel time-series database to the existing relational database. The time-series database improves on the current utility data input, focusing on real-time data collection, storage, analytics and data quality control. The fully integrated data platform supports APIs for utility apps development by third party software developers. These apps will provide actionable intelligence for building owners and facilities managers. Unlike a commercial system, this platform is an open source platform funded by the U.S. Government, accessible to the public, researchers and other developers, to support initiatives in reducing building energy consumption.

  4. MAID : An effect size based model for microarray data integration across laboratories and platforms

    Directory of Open Access Journals (Sweden)

    Edwards Aled M

    2008-07-01

    Full Text Available Abstract Background Gene expression profiling has the potential to unravel molecular mechanisms behind gene regulation and identify gene targets for therapeutic interventions. As microarray technology matures, the number of microarray studies has increased, resulting in many different datasets available for any given disease. The increase in sensitivity and reliability of measurements of gene expression changes can be improved through a systematic integration of different microarray datasets that address the same or similar biological questions. Results Traditional effect size models can not be used to integrate array data that directly compare treatment to control samples expressed as log ratios of gene expressions. Here we extend the traditional effect size model to integrate as many array datasets as possible. The extended effect size model (MAID can integrate any array datatype generated with either single or two channel arrays using either direct or indirect designs across different laboratories and platforms. The model uses two standardized indices, the standard effect size score for experiments with two groups of data, and a new standardized index that measures the difference in gene expression between treatment and control groups for one sample data with replicate arrays. The statistical significance of treatment effect across studies for each gene is determined by appropriate permutation methods depending on the type of data integrated. We apply our method to three different expression datasets from two different laboratories generated using three different array platforms and two different experimental designs. Our results indicate that the proposed integration model produces an increase in statistical power for identifying differentially expressed genes when integrating data across experiments and when compared to other integration models. We also show that genes found to be significant using our data integration method are of direct

  5. On the performance of exponential integrators for problems in magnetohydrodynamics

    Science.gov (United States)

    Einkemmer, Lukas; Tokman, Mayya; Loffeld, John

    2017-02-01

    Exponential integrators have been introduced as an efficient alternative to explicit and implicit methods for integrating large stiff systems of differential equations. Over the past decades these methods have been studied theoretically and their performance was evaluated using a range of test problems. While the results of these investigations showed that exponential integrators can provide significant computational savings, the research on validating this hypothesis for large scale systems and understanding what classes of problems can particularly benefit from the use of the new techniques is in its initial stages. Resistive magnetohydrodynamic (MHD) modeling is widely used in studying large scale behavior of laboratory and astrophysical plasmas. In many problems numerical solution of MHD equations is a challenging task due to the temporal stiffness of this system in the parameter regimes of interest. In this paper we evaluate the performance of exponential integrators on large MHD problems and compare them to a state-of-the-art implicit time integrator. Both the variable and constant time step exponential methods of EPIRK-type are used to simulate magnetic reconnection and the Kevin-Helmholtz instability in plasma. Performance of these methods, which are part of the EPIC software package, is compared to the variable time step variable order BDF scheme included in the CVODE (part of SUNDIALS) library. We study performance of the methods on parallel architectures and with respect to magnitudes of important parameters such as Reynolds, Lundquist, and Prandtl numbers. We find that the exponential integrators provide superior or equal performance in most circumstances and conclude that further development of exponential methods for MHD problems is warranted and can lead to significant computational advantages for large scale stiff systems of differential equations such as MHD.

  6. Euroasian Integration Process and Effective Institutional Mechanism Creation Problems

    Directory of Open Access Journals (Sweden)

    Olga M. Mesheriakova

    2014-06-01

    Full Text Available In the present article "Euroasian Integration Process and Effective Institutional Mechanism Creation Problems" author investigates the problem of effective and balanced decision-making mechanism in the integration communities creation. Process of the Customs union creation on the Euroasian space began relatively long ago. Creation of such union was started by the Russian Federation and the Republic of Belarus in the 1995. The same year Republic of Kazakhstan joined an integration process. A little later Kyrgyzstan and Tajikistan joined the Customs union – in 1996 and in 1999 respectively. Author on the basis of careful study of the decision-making mechanisms in the Customs union, CIS, EurAsEC and EU, carries out the comparative analysis of the specified mechanisms. Author conducts detailed analytics, gives opinions of jurists, state and public figures, proves own opinions. On the basis of the comparative research conducted by the author the criteria of legal mechanism of decision-making in the integration process efficiency are researched and discussed, what allows to speak about the integration of the legal system. At the end of the article author draws a conclusion that coordination of sovereign desires of states in the integration community represents difficult and many-sided process which has to be based on the balanced decision-making mechanism, which is a main criterion of the institutional mechanism of integration efficiency.

  7. Integral calculus problem solving: an fMRI investigation.

    Science.gov (United States)

    Krueger, Frank; Spampinato, Maria Vittoria; Pardini, Matteo; Pajevic, Sinisa; Wood, Jacqueline N; Weiss, George H; Landgraf, Steffen; Grafman, Jordan

    2008-07-16

    Only a subset of adults acquires specific advanced mathematical skills, such as integral calculus. The representation of more sophisticated mathematical concepts probably evolved from basic number systems; however its neuroanatomical basis is still unknown. Using fMRI, we investigated the neural basis of integral calculus while healthy participants were engaged in an integration verification task. Solving integrals activated a left-lateralized cortical network including the horizontal intraparietal sulcus, posterior superior parietal lobe, posterior cingulate gyrus, and dorsolateral prefrontal cortex. Our results indicate that solving of more abstract and sophisticated mathematical facts, such as calculus integrals, elicits a pattern of brain activation similar to the cortical network engaged in basic numeric comparison, quantity manipulation, and arithmetic problem solving.

  8. Reactive Robustness and Integrated Approaches for Railway Optimization Problems

    DEFF Research Database (Denmark)

    Haahr, Jørgen Thorlund

    -critical situations, new plans must be found quickly. Integration of the different planning problems is also considered in this thesis as these problems are strongly interdependent in many cases. In contrast, finding feasible plans for each problem in isolation can lead to an overall infeasibility, e.g., during....... In collaboration with industry and academic partners real-life and realistic data has been used to benchmark and test the solution methods. A central actor and theme of the thesis is the rolling stock running on the railway networks. A public timetable is given, and in order to service the departures...

  9. Integrated Microfluidic Lectin Barcode Platform for High-Performance Focused Glycomic Profiling.

    Science.gov (United States)

    Shang, Yuqin; Zeng, Yun; Zeng, Yong

    2016-02-02

    Protein glycosylation is one of the key processes that play essential roles in biological functions and dysfunctions. However, progress in glycomics has considerably lagged behind genomics and proteomics, due in part to the enormous challenges in analysis of glycans. Here we present a new integrated and automated microfluidic lectin barcode platform to substantially improve the performance of lectin array for focused glycomic profiling. The chip design and flow control were optimized to promote the lectin-glycan binding kinetics and speed of lectin microarray. Moreover, we established an on-chip lectin assay which employs a very simple blocking method to effectively suppress the undesired background due to lectin binding of antibodies. Using this technology, we demonstrated focused differential profiling of tissue-specific glycosylation changes of a biomarker, CA125 protein purified from ovarian cancer cell line and different tissues from ovarian cancer patients in a fast, reproducible, and high-throughput fashion. Highly sensitive CA125 detection was also demonstrated with a detection limit much lower than the clinical cutoff value for cancer diagnosis. This microfluidic platform holds the potential to integrate with sample preparation functions to construct a fully integrated "sample-to-answer" microsystem for focused differential glycomic analysis. Thus, our technology should present a powerful tool in support of rapid advance in glycobiology and glyco-biomarker development.

  10. Micromanipulation of InP lasers with optoelectronic tweezers for integration on a photonic platform.

    Science.gov (United States)

    Juvert, Joan; Zhang, Shuailong; Eddie, Iain; Mitchell, Colin J; Reed, Graham T; Wilkinson, James S; Kelly, Anthony; Neale, Steven L

    2016-08-08

    The integration of light sources on a photonic platform is a key aspect of the fabrication of self-contained photonic circuits with a small footprint that does not have a definitive solution yet. Several approaches are being actively researched for this purpose. In this work we propose optoelectronic tweezers for the manipulation and integration of light sources on a photonic platform and report the positional and angular accuracy of the micromanipulation of standard Fabry-Pérot InP semiconductor laser die. These lasers are over three orders of magnitude bigger in volume than any previously assembled with optofluidic techniques and the fact that they are industry standard lasers makes them significantly more useful than previously assembled microdisk lasers. We measure the accuracy to be 2.5 ± 1.4 µm and 1.4 ± 0.4° and conclude that optoelectronic tweezers are a promising technique for the micromanipulation and integration of optoelectronic components in general and semiconductor lasers in particular.

  11. 基于SOA的舰船安全平台集成架构%Integrated Architecture of Ship Security Platform Based on SOA

    Institute of Scientific and Technical Information of China (English)

    郭文刚

    2014-01-01

    舰船安全信息化集成的不断深入发展使舰船安全平台需求也发生了一些变化,舰船的安全设施和安全系统的服务化集成成为舰船安全建设的一个亟待解决的问题。针对这种情况,本文提出基于 SOA 的舰船安全平台集成架构进行设计研究,通过采用EJB组件进行开发,利用WSDL来描述架构集成接口,各个流程的服务设计采用聚类算法,最终设计并实现了一个基于 SOA 的舰船安全平台集成框架,并给出了舰船安全管理平台服务化集成的算法实现,研究结果表明,数字化舰船中的舰船安全设备与其他舰船安全信息系统可以实现无缝集成,较好的解决舰船安全平台信息资源不能有效共享问题,可以在武器平台舰船信息安全系统里进行实际应用。%The deep development of information-integration of ship security changes the need of ship security platform. The integration of ship security equipment and security system becomes a problem urgently to be solved in ship safety construction. In view of this, this paper proposes the design of integrated architecture of ship security platform based on SOA. EJB components will be used to develop the system and WSDL will be applied to describe the architecture integration interface. Added that each process of service designs is using the clustering algorithm, it aims to achieve an integrated architecture of ship security platform based on SOA, and also shows the algorithm implementation of service integration of ship safety management platform. The research proves that it can realize a seamless integration of ship safety equipment and other ship safety information system in digital ship. It effectively solved the problem that ship security platform information resources cannot be shared each other, and can be applied in the weapon platform ship information security system practically.

  12. Integration and Testing of Miniaturized Volcanic Gas-Sensing Instruments on UAS Platforms

    Science.gov (United States)

    Lopez, T. M.; Kern, C.; Diaz, J. A.; Vanderwaal, S. J.; Levy, A.

    2015-12-01

    Volcanologists measure the concentrations and emission rates of gases emitted from active volcanoes to understand magmatic processes, which aids in eruption forecasting, and to evaluate air quality for human and environmental health. Both of these applications become particularly important during periods of unusually high volcanic unrest when it is typically hazardous to approach a given volcano. Unmanned aerial systems (UASs) represent a promising platform for continued gas measurements during unrest, while reducing the risk to volcanologists. Two miniature gas-sensing instruments have been developed specifically for integration onto small UAS platforms. Both instruments weigh 1 kg or less, including integrated power. The microDOAS instrument is an upward-looking UV/vis spectrometer that measures the spectral absorption signature of SO2 and certain halogen oxides in scattered solar radiation. By flying beneath a volcanic plume, the instrument can measure the SO2 content in the plume cross-section which can be used to determine the SO2 emission rate. The miniGas instrument is flown within the volcanic plume and records in situ concentrations of CO2, SO2 and H2S, as well as atmospheric temperature, pressure, relative humidity and GPS location. All data are telemetered back to the base station to immediately alert the operator of potentially hazardous conditions. Both instruments have been successfully tested at active volcanoes in Alaska and Costa Rica and were integrated onto small ACUASI Ptarmigan hexacopters. A test mission was conducted at the Poker Flat Research Range in Alaska. During this experiment both instruments were successfully flown in flight patterns typical of manned volcanic gas measurements and new UAV-specific measurement strategies were developed. Here we describe the instruments and platforms employed, our experimental results and observations, and make recommendations for application to volcanic settings.

  13. Understanding Student Use of Differentials in Physics Integration Problems

    Science.gov (United States)

    Hu, Dehui; Rebello, N. Sanjay

    2013-01-01

    This study focuses on students' use of the mathematical concept of differentials in physics problem solving. For instance, in electrostatics, students need to set up an integral to find the electric field due to a charged bar, an activity that involves the application of mathematical differentials (e.g., "dr," "dq"). In…

  14. Computer integration in the curriculum: promises and problems

    NARCIS (Netherlands)

    Plomp, Tjeerd; Akker, van den Jan J.H.

    1988-01-01

    This discussion of the integration of computers into the curriculum begins by reviewing the results of several surveys conducted in the Netherlands and the United States which provide insight into the problems encountered by schools and teachers when introducing computers in education. Case studies

  15. Early Pubertal Timing and Girls' Problem Behavior: Integrating Two Hypotheses

    Science.gov (United States)

    Stattin, Hakan; Kerr, Margaret; Skoog, Therese

    2011-01-01

    Girls' early pubertal timing has been linked in many studies to behavioral problems such as delinquency and substance use. The theoretical explanations for these links have often involved the girls' peer relationships, but contexts have also been considered important in some explanations. By integrating two theoretical models, the…

  16. Understanding Student Use of Differentials in Physics Integration Problems

    Science.gov (United States)

    Hu, Dehui; Rebello, N. Sanjay

    2013-01-01

    This study focuses on students' use of the mathematical concept of differentials in physics problem solving. For instance, in electrostatics, students need to set up an integral to find the electric field due to a charged bar, an activity that involves the application of mathematical differentials (e.g., "dr," "dq"). In this…

  17. Optimal stability polynomials for numerical integration of initial value problems

    KAUST Repository

    Ketcheson, David I.

    2013-01-08

    We consider the problem of finding optimally stable polynomial approximations to the exponential for application to one-step integration of initial value ordinary and partial differential equations. The objective is to find the largest stable step size and corresponding method for a given problem when the spectrum of the initial value problem is known. The problem is expressed in terms of a general least deviation feasibility problem. Its solution is obtained by a new fast, accurate, and robust algorithm based on convex optimization techniques. Global convergence of the algorithm is proven in the case that the order of approximation is one and in the case that the spectrum encloses a starlike region. Examples demonstrate the effectiveness of the proposed algorithm even when these conditions are not satisfied.

  18. Progress in Open-World, Integrative, Collaborative Science Data Platforms (Invited)

    Science.gov (United States)

    Fox, P. A.

    2013-12-01

    As collaborative, or network science spreads into more Earth and space science fields, both the participants and their funders have expressed a very strong desire for highly functional data and information capabilities that are a) easy to use, b) integrated in a variety of ways, c) leverage prior investments and keep pace with rapid technical change, and d) are not expensive or time-consuming to build or maintain. In response, and based on our accumulated experience over the last decade and a maturing of several key technical approaches, we have adapted, extended, and integrated several open source applications and frameworks that handle major portions of functionality for these platforms. At minimum, these functions include: an object-type repository, collaboration tools, an ability to identify and manage all key entities in the platform, and an integrated portal to manage diverse content and applications, with varied access levels and privacy options. At a conceptual level, science networks (even small ones) deal with people, and many intellectual artifacts produced or consumed in research, organizational and/our outreach activities, as well as the relations among them. Increasingly these networks are modeled as knowledge networks, i.e. graphs with named and typed relations among the 'nodes'. Nodes can be people, organizations, datasets, events, presentations, publications, videos, meetings, reports, groups, and more. In this heterogeneous ecosystem, it is also important to use a set of common informatics approaches to co-design and co-evolve the needed science data platforms based on what real people want to use them for. In this contribution, we present our methods and results for information modeling, adapting, integrating and evolving a networked data science and information architecture based on several open source technologies (Drupal, VIVO, the Comprehensive Knowledge Archive Network; CKAN, and the Global Handle System; GHS). In particular we present both

  19. Performance Assessment of Variational Integrators for Thermomechanical Problems

    CERN Document Server

    Kern, Dominik; Martin, Sergio Conde; Garcia-Orden, Juan Carlos

    2016-01-01

    Structure-preserving integrators are in the focus of ongoing research because of their distinguished features of robustness and long time stability. In particular, their formulation for coupled problems that include dissipative mechanisms is still an active topic. Conservative formulations, such as the thermo-elastic case without heat conduction, fit well into a variational framework and have been solved with variational integrators, whereas the inclusions of viscosity and heat transfer are still under investigation. To encompass viscous forces and heat transfer, an extension of Hamilton's principle is required. In this contribution we derive variational integrators for thermo-viscoelastic systems with classical heat transfer. Their results are compared for two discrete model problems vs. Energy-Entropy-Momentum methods. Such comparisons allow to draw conclusions about their relative performance, weaknesses and strengths.

  20. NOVEL REGULARIZED BOUNDARY INTEGRAL EQUATIONS FOR POTENTIAL PLANE PROBLEMS

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yao-ming; L(U) He-xiang; WANG Li-min

    2006-01-01

    The universal practices have been centralizing on the research of regularization to the direct boundary integal equations (DBIEs). The character is elimination of singularities by using the simple solutions. However, up to now the research of regularization to the first kind integral equations for plane potential problems has never been found in previous literatures. The presentation is mainly devoted to the research on the regularization of the singular boundaryintegral equations with indirect unknowns. A novel view and idea is presented herein, in which the regularized boundary integral equations with indirect unknowns without including the Cauchy principal value (CPV) and Hadamard-finite-part (HFP) integrals are established for the plane potential problems.With some numerical results, it is shown that the better accuracy and higher efficiency,especially on the boundary, can be achieved by the present system.

  1. Miniaturized Integrated Platform for Electrical and Optical Monitoring of Cell Cultures

    Directory of Open Access Journals (Sweden)

    Costin Brasoveanu

    2012-08-01

    Full Text Available The following paper describes the design and functions of a miniaturized integrated platform for optical and electrical monitoring of cell cultures and the necessary steps in the fabrication and testing of a silicon microchip Micro ElectroMechanical Systems (MEMS-based technology for cell data recording, monitoring and stimulation. The silicon microchip consists of a MEMS machined device containing a shank of 240 μm width, 3 mm long and 50 μm thick and an enlarged area of 5 mm × 5 mm hosting the pads for electrical connections. Ten platinum electrodes and five sensors are placed on the shank and are connected with the external electronics through the pads. The sensors aim to monitor the pH, the temperature and the impedance of the cell culture. The electrodes are bidirectional and can be used both for electrical potential recording and stimulation of cells. The fabrication steps are presented, along with the electrical and optical characterization of the system. The target of the research is to develop a new and reconfigurable platform according to the particular applications needs, as a tool for the biologist, chemists and medical doctors working is the field of cell culture monitoring in terms of growth, maintenance conditions, reaction to electrical or chemical stimulation (drugs, toxicants, etc.. HaCaT (Immortalised Human Keratinocyte cell culture has been used for demonstration purposes in order to provide information on the platform electrical and optical functions.

  2. Quality control of next-generation sequencing library through an integrative digital microfluidic platform.

    Science.gov (United States)

    Thaitrong, Numrin; Kim, Hanyoup; Renzi, Ronald F; Bartsch, Michael S; Meagher, Robert J; Patel, Kamlesh D

    2012-12-01

    We have developed an automated quality control (QC) platform for next-generation sequencing (NGS) library characterization by integrating a droplet-based digital microfluidic (DMF) system with a capillary-based reagent delivery unit and a quantitative CE module. Using an in-plane capillary-DMF interface, a prepared sample droplet was actuated into position between the ground electrode and the inlet of the separation capillary to complete the circuit for an electrokinetic injection. Using a DNA ladder as an internal standard, the CE module with a compact LIF detector was capable of detecting dsDNA in the range of 5-100 pg/μL, suitable for the amount of DNA required by the Illumina Genome Analyzer sequencing platform. This DMF-CE platform consumes tenfold less sample volume than the current Agilent BioAnalyzer QC technique, preserving precious sample while providing necessary sensitivity and accuracy for optimal sequencing performance. The ability of this microfluidic system to validate NGS library preparation was demonstrated by examining the effects of limited-cycle PCR amplification on the size distribution and the yield of Illumina-compatible libraries, demonstrating that as few as ten cycles of PCR bias the size distribution of the library toward undesirable larger fragments.

  3. Massively Parallel, Molecular Analysis Platform Developed Using a CMOS Integrated Circuit With Biological Nanopores

    Science.gov (United States)

    Roever, Stefan

    2012-01-01

    A massively parallel, low cost molecular analysis platform will dramatically change the nature of protein, molecular and genomics research, DNA sequencing, and ultimately, molecular diagnostics. An integrated circuit (IC) with 264 sensors was fabricated using standard CMOS semiconductor processing technology. Each of these sensors is individually controlled with precision analog circuitry and is capable of single molecule measurements. Under electronic and software control, the IC was used to demonstrate the feasibility of creating and detecting lipid bilayers and biological nanopores using wild type α-hemolysin. The ability to dynamically create bilayers over each of the sensors will greatly accelerate pore development and pore mutation analysis. In addition, the noise performance of the IC was measured to be 30fA(rms). With this noise performance, single base detection of DNA was demonstrated using α-hemolysin. The data shows that a single molecule, electrical detection platform using biological nanopores can be operationalized and can ultimately scale to millions of sensors. Such a massively parallel platform will revolutionize molecular analysis and will completely change the field of molecular diagnostics in the future.

  4. Integrating Platform Selection Rules in the Model-Driven Architecture Approach

    NARCIS (Netherlands)

    Tekinerdogan, B.; Bilir, S.; Abatlevi, C.; Assmann, U.; Aksit, M.; Rensink, A.

    2005-01-01

    A key issue in the MDA approach is the transformation of platform independent models to platform specific models. Before transforming to a platform specific model, however, it is necessary to select the appropriate platform. Various platforms exist with different properties and the selection of the

  5. Macro-Integration for Solving Large Data Reconciliation Problems

    Directory of Open Access Journals (Sweden)

    Nino Mushkudiani

    2014-04-01

    Full Text Available Macro-integration technique is a well established method forreconciliation of large, high-dimensional tables, especially applied to macroeconomic data at national statistical oces (NSO. This technique is mainly used when data obtained from dierent sources should be reconciled on a macro level. New areas of applications for this technique arise as new data sources become available to NSO's. Often these new data sources cannot be combined on a micro level, while macro integration could provide a solution for such problems. Yet, more research should be carried out to investigate if in such situations macro integration could indeed be applied. In this paper we propose two applications of macro-integration techniques in other domains than the traditional macro-economic applications. In particular: reconciliation of tables of a virtual census and reconciliation of monthly series of short term statistics gures with the quarterly gures of structural business statistics.

  6. Using a blog as an integrated eLearning tool and platform.

    Science.gov (United States)

    Goh, Poh Sun

    2016-06-01

    Technology enhanced learning or eLearning allows educators to expand access to educational content, promotes engagement with students and makes it easier for students to access educational material at a time, place and pace which suits them. The challenge for educators beginning their eLearning journey is to decide where to start, which includes the choice of an eLearning tool and platform. This article will share one educator's decision making process, and experience using blogs as a flexible and versatile integrated eLearning tool and platform. Apart from being a cost effective/free tool and platform, blogs offer the possibility of creating a hyperlinked indexed content repository, for both created and curated educational material; as well as a distribution and engagement tool and platform. Incorporating pedagogically sound activities and educational practices into a blog promote a structured templated teaching process, which can be reproduced. Moving from undergraduate to postgraduate training, educational blogs supported by a comprehensive online case-based repository offer the possibility of training beyond competency towards proficiency and expert level performance through a process of deliberate practice. By documenting educational content and the student engagement and learning process, as well as feedback and personal reflection of educational sessions, blogs can also form the basis for a teaching portfolio, and provide evidence and data of scholarly teaching and educational scholarship. Looking into the future, having a collection of readily accessible indexed hyperlinked teaching material offers the potential to do on the spot teaching with illustrative material called up onto smart surfaces, and displayed on holographic interfaces.

  7. Integrated FBG sensors interrogator in silicon photonic platform using active interferometer monitoring

    Science.gov (United States)

    Marin, Y. E.; Nannipieri, T.; Di Pasquale, F.; Oton, C. J.

    2016-05-01

    We experimentally demonstrate the feasibility of Fiber Bragg Grating sensors interrogation using integrated unbalanced Mach-Zehnder Interferometers (MZI) and phase sensitive detection in silicon-on-insulator (SOI) platform. The Phase- Generated Carrier (PGC) demodulation technique is used to detect phase changes, avoiding signal fading. Signal processing allows us to extract the wavelength shift from the signal patterns, allowing accurate dynamic FBG interrogation. High resolution and low cost chips with multiple interrogators and photodetectors on board can be realized by exploiting the advantages of large scale fabrication capabilities of well-established silicon based industrial infrastructures. Simultaneous dynamic reading of a large number of FBG sensors can lead to large volume market applications of the technology in several strategic industrial fields. The performance of the proposed integrated FBG interrogator is validated by comparing with a commercial FBG readout based on a spectrometer and used as a reference.

  8. A survey of open problems in symplectic integration

    Energy Technology Data Exchange (ETDEWEB)

    McLachlan, R.I. [Univ. of Colorado, Boulder, CO (United States); Scovel, C. [Los Alamos National Lab., NM (United States)

    1993-10-15

    In the past few years there has been a substantial amount of research on symplectic integration. The subject is only part of a program concerned with numerically preserving a system`s inherent geometrical structures. Volume preservation, reversibility, local conservation laws for elliptic equations, and systems with integral invariants are but a few examples of such invariant structures. In many cases one requires a numerical method to stay in the smallest possible appropriate group of phase space maps. It is not the authors` opinion that symplecticity, for example, automatically makes a numerical method superior to all others, but it is their opinion that it should be taken seriously and that a conscious, informed decision be made in that regard. The authors present here a survey of open problems in symplectic integration, including other problems from the larger program. This is not intended as a review of symplectic integration and is naturally derived from the authors` own research interests. At present, this survey is incomplete, but the authors hope the help of the colleagues to be able to include in the proceedings of this conference a more comprehensive survey. Many of the problems mentioned here call for numerical experimentation, some for application of suggested but untested methods, some for new methods, and some for theorems, Some envisage large research programs.

  9. An integrated bioanalytical platform for supporting high-throughput serum protein binding screening.

    Science.gov (United States)

    Zhang, Jun; Shou, Wilson Z; Vath, Marianne; Kieltyka, Kasia; Maloney, Jennifer; Elvebak, Larry; Stewart, Jeremy; Herbst, John; Weller, Harold N

    2010-12-30

    Quantification of small molecules using liquid chromatography/tandem mass spectrometry (LC/MS/MS) on a triple quadrupole mass spectrometer has become a common practice in bioanalytical support of in vitro adsorption, distribution, metabolism and excretion (ADME) screening. The bioanalysis process involves primarily three indispensable steps: MS/MS optimization for a large number of new chemical compounds undergoing various screening assays in early drug discovery, high-throughput sample analysis with LC/MS/MS for those chemically diverse compounds using the optimized MS/MS conditions, and post-acquisition data review and reporting. To improve overall efficiency of ADME bioanalysis, an integrated system was proposed featuring an automated and unattended MS/MS optimization, a staggered parallel LC/MS/MS for high-throughput sample analysis, and a sophisticated software tool for LC/MS/MS raw data review as well as biological data calculation and reporting. The integrated platform has been used in bioanalytical support of a serum protein binding screening assay with high speed, high capacity, and good robustness. In this new platform, a unique sample dilution scheme was also introduced. With this dilution design, the total number of analytical samples was reduced; therefore, the total operation time was reduced and the overall throughput was further improved. The performance of the protein binding screening assay was monitored with two controls representing high and low binding properties and an acceptable inter-assay consistency was achieved. This platform has been successfully used for the determination of serum protein binding in multiple species for more than 4000 compounds.

  10. Advanced imaging with dynamic focus and extended depth using integrated FR4 platform.

    Science.gov (United States)

    Isikman, Serhan O; Varghese, Samuel; Abdullah, Fahd; Augustine, Robin; Sprague, Randy B; Andron, Voytek; Urey, Hakan

    2009-09-14

    A two-degrees-of-freedom scanned beam imaging system with large dynamic range and dynamic focusing is demonstrated. The laser diode, photo-detector and the optical components are integrated on a moving platform that is made of FR4 (Flame-Retardant 4), a common polymeric substrate used in printed circuit boards. A scan angle of 52 degrees is demonstrated at 60 Hz resonant frequency while the laser is moved 250 um in the out-of-plane direction to achieve dynamic focusing. The laser is scanned by physically rotating the laser diode and the collection optics to achieve high signal-to-noise ratio and good ambient light rejection. The collection optics is engineered such that the collection efficiency decreases when collecting light from close distances to avoid detector saturation. The detection range is extended from contact distance up to 600 mm while the collected power level varies only by a factor of 30 within this long range. Slight modifications will allow increasing the detection range up to one meter. This is the first demonstration of a laser scan engine with such a high degree of integration of electronics, optoelectronics, optics and micromechanics on the same platform.

  11. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.

    Science.gov (United States)

    Marshall-Colon, Amy; Long, Stephen P; Allen, Douglas K; Allen, Gabrielle; Beard, Daniel A; Benes, Bedrich; von Caemmerer, Susanne; Christensen, A J; Cox, Donna J; Hart, John C; Hirst, Peter M; Kannan, Kavya; Katz, Daniel S; Lynch, Jonathan P; Millar, Andrew J; Panneerselvam, Balaji; Price, Nathan D; Prusinkiewicz, Przemyslaw; Raila, David; Shekar, Rachel G; Shrivastava, Stuti; Shukla, Diwakar; Srinivasan, Venkatraman; Stitt, Mark; Turk, Matthew J; Voit, Eberhard O; Wang, Yu; Yin, Xinyou; Zhu, Xin-Guang

    2017-01-01

    Multi-scale models can facilitate whole plant simulations by linking gene networks, protein synthesis, metabolic pathways, physiology, and growth. Whole plant models can be further integrated with ecosystem, weather, and climate models to predict how various interactions respond to environmental perturbations. These models have the potential to fill in missing mechanistic details and generate new hypotheses to prioritize directed engineering efforts. Outcomes will potentially accelerate improvement of crop yield, sustainability, and increase future food security. It is time for a paradigm shift in plant modeling, from largely isolated efforts to a connected community that takes advantage of advances in high performance computing and mechanistic understanding of plant processes. Tools for guiding future crop breeding and engineering, understanding the implications of discoveries at the molecular level for whole plant behavior, and improved prediction of plant and ecosystem responses to the environment are urgently needed. The purpose of this perspective is to introduce Crops in silico (cropsinsilico.org), an integrative and multi-scale modeling platform, as one solution that combines isolated modeling efforts toward the generation of virtual crops, which is open and accessible to the entire plant biology community. The major challenges involved both in the development and deployment of a shared, multi-scale modeling platform, which are summarized in this prospectus, were recently identified during the first Crops in silico Symposium and Workshop.

  12. Integrated Performance Monitoring of a Cosmology Application onLeading HEC Platforms

    Energy Technology Data Exchange (ETDEWEB)

    Borrill, Julian; Carter, Jonathan; Oliker, Leonid; Skinner,David; Biswas, Rupak

    2005-04-01

    The Cosmic Microwave Background (CMB) is an exquisitely sensitive probe of the fundamental parameters of cosmology. Extracting this information is computationally intensive, requiring massively parallel computing and sophisticated numerical algorithms. In this work we present MAD bench, a lightweight version of the MADCAP CMB power spectrum estimation code that retains the operational complexity and integrated system requirements. In addition, to quantify communication behavior across a variety of architectural platforms, we introduce the Integrated Performance Monitoring (IPM) package: a portable, lightweight,and scalable tool for effectively extracting MPI message-passing overheads. A performance characterization study is conducted on some of the world's most powerful supercomputers, including the superscalar Seaborg(IBMPower3+) and CC-NUMA Columbia (SGI Altix), as well as the vector-based Earth Simulator (NEC SX-6 enhanced) and Phoenix (Cray X1)systems. In-depth analysis shows that in order to bridge the gap between theoretical and sustained system performance, it is critical to gain a clear understanding of how the distinct parts of large-scale parallel applications interact with the individual subcomponents of HEC platforms.

  13. An integrated microfluidic platform for rapid tumor cell isolation, counting and molecular diagnosis.

    Science.gov (United States)

    Hung, Lien-Yu; Chuang, Ying-Hsin; Kuo, Hsin-Tzu; Wang, Chih-Hung; Hsu, Keng-Fu; Chou, Cheng-Yang; Lee, Gwo-Bin

    2013-04-01

    Ovarian cancer is the second most common of the gynecological cancers in Taiwan. It is challenging to diagnose at an early stage when proper treatment is the most effective. It is well recognized that the detection of tumor cells (TCs) is critical for determining cancer growth stages and may provide important information for accurate diagnosis and even prognosis. In this study, a new microfluidic platform integrated with a moving-wall micro-incubator, a micro flow cytometer and a molecular diagnosis module performed automated identification of ovarian cancer cells. By efficiently mixing the cells and immunomagnetic beads coated with specific antibodies, the target TCs were successfully isolated from the clinical samples. Then counting of the target cells was achieved by a combination of the micro flow cytometer and an optical detection module and showed a counting accuracy as high as 92.5 %. Finally, cancer-associated genes were amplified and detected by the downstream molecular diagnosis module. The fluorescence intensity of specific genes (CD24 and HE4) associated with ovarian cancer was amplified by the molecular diagnosis module and the results were comparable to traditional slab-gel electrophoresis analysis, with a limit of detection around 10 TCs. This integrated microfluidic platform realized the concept of a "lab-on-a-chip" and had advantages which included automation, disposability, lower cost and rapid diagnosis and, therefore, may provide a promising approach for the fast and accurate detection of cancer cells.

  14. Integrated modeling of natural and human systems - problems and initiatives

    Science.gov (United States)

    Kessler, H.; Giles, J.; Gunnink, J.; Hughes, A.; Moore, R. V.; Peach, D.

    2009-12-01

    's system, e.g. the flow of groundwater to an abstraction borehole or the availability of water for irrigation. Particular problems arise when model data from two or more disciplines are incompatible in terms of data formats, scientific concepts or language. Other barriers include the cultural segregation within and between science disciplines as well as impediments to data exchange due to ownership and copyright restrictions. OpenMI and GeoSciML are initiatives that are trying to overcome these barriers by building international communities that share vocabularies and data formats. This paper will give examples of the successful merging of geological and hydrological models from the UK and the Netherlands and will introduce the vision of an open Environmental Modelling Platform which aims to link data, knowledge and concepts seamlessly to numerical process models. Last but not least there is an urgent need to create a Subsurface Management System akin to a Geographic Information System in which all results of subsurface modelling can be visualised and analysed in an integrated manner.

  15. 微博与图书馆网站互动平台的整合%Integration of Micro-blog with the Interactive Platform of Library Website

    Institute of Scientific and Technical Information of China (English)

    赵文金

    2012-01-01

    微博作为一种新兴的信息互动交流平台,已被越来越多的图书馆所使用;而网站作为图书馆传统的宣传与互动交流主平台,应与微博进行有效的整合,以期取得效益的最大化。文章讨论了微博与图书馆网站互动平台整合的需求性与可行性,以实例形式阐述了实现整合的方式、方法,并提出了整合配置过程中需要注意的一些问题。%As a new type of interactive platform, Micro-blog has been increasingly applied in libraries. In order to obtain the maximized benefits, the library website, as a traditional publicity and interaction platform, should be well integrated with the Microblog. This article discusses the demands and the feasibility of the integration mentioned a- bove. Then it explains how to achieve the integrated interactive platform in the form of case study, Finally it lists a number of potential problems that occur in the process of integration.

  16. Optimal control problems for impulsive systems with integral boundary conditions

    Directory of Open Access Journals (Sweden)

    Allaberen Ashyralyev

    2013-03-01

    Full Text Available In this article, the optimal control problem is considered when the state of the system is described by the impulsive differential equations with integral boundary conditions. Applying the Banach contraction principle the existence and uniqueness of the solution is proved for the corresponding boundary problem by the fixed admissible control. The first and second variation of the functional is calculated. Various necessary conditions of optimality of the first and second order are obtained by the help of the variation of the controls.

  17. An integrated platform for gas-diffusion separation and electrochemical determination of ethanol on fermentation broths

    Energy Technology Data Exchange (ETDEWEB)

    Giordano, Gabriela Furlan [Microfabrication Laboratory, Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP 13083-970 (Brazil); Department of Analytical Chemistry, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil); National Institute of Science and Technology of Bioanalytics, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil); Vieira, Luis Carlos Silveira; Gobbi, Angelo Luiz [Microfabrication Laboratory, Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP 13083-970 (Brazil); Lima, Renato Sousa [Microfabrication Laboratory, Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP 13083-970 (Brazil); Department of Analytical Chemistry, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil); National Institute of Science and Technology of Bioanalytics, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil); Kubota, Lauro Tatsuo, E-mail: kubota@iqm.unicamp.br [Department of Analytical Chemistry, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil); National Institute of Science and Technology of Bioanalytics, Institute of Chemistry – UNICAMP, Campinas, SP 13083-970 (Brazil)

    2015-05-22

    Highlights: • Integrated platform was developed to determine ethanol in fermentation broths. • The designed system integrates gas diffusion separation with voltammetric detection. • Detector relied on Ni(OH){sub 2}-modified electrode stabilized by Co{sup 2+} and Cd{sup 2+} insertion. • Separation was made by PTFE membrane separating sample from electrolyte (receptor). • Despite the sample complexity, accurate tests were achieved by direct interpolation. - Abstract: An integrated platform was developed for point-of-use determination of ethanol in sugar cane fermentation broths. Such analysis is important because ethanol reduces its fuel production efficiency by altering the alcoholic fermentation step when in excess. The custom-designed platform integrates gas diffusion separation with voltammetric detection in a single analysis module. The detector relied on a Ni(OH){sub 2}-modified electrode. It was stabilized by uniformly depositing cobalt and cadmium hydroxides as shown by XPS measurements. Such tests were in accordance with the hypothesis related to stabilization of the Ni(OH){sub 2} structure by insertion of Co{sup 2+} and Cd{sup 2+} ions in this structure. The separation step, in turn, was based on a hydrophobic PTFE membrane, which separates the sample from receptor solution (electrolyte) where the electrodes were placed. Parameters of limit of detection and analytical sensitivity were estimated to be 0.2% v/v and 2.90 μA % (v/v){sup −1}, respectively. Samples of fermentation broth were analyzed by both standard addition method and direct interpolation in saline medium based-analytical curve. In this case, the saline solution exhibited ionic strength similar to those of the samples intended to surpass the tonometry colligative effect of the samples over analyte concentration data by attributing the reduction in quantity of diffused ethanol vapor majorly to the electrolyte. The approach of analytical curve provided rapid, simple and accurate

  18. Integrating Global Learning into a Psychology Course Using an Online Platform

    Science.gov (United States)

    Forden, Carie L.; Carrillo, Amy M.

    2014-01-01

    There is a demand for the integration of global learning/diversity across the curriculum. A series of cross-cultural assignments was created to facilitate global learning in two social psychology classes, one in Egypt, and one in the USA. In these assignments, students collected data and applied course concepts to real-life problems, then…

  19. Integration of Problem-Solving Techniques in Agriculture

    OpenAIRE

    1989-01-01

    Problem-solving techniques such as modeling, simulation, optimization, and network analysis have been used extensively to help agricultural scientists and practitioners understand and control biological systems. By their nature, most of these systems are difficult to quantitatively define. Many of the models and simulations that have been developed lack a user interface which enables people other than the developer to use them. As a result, several scientists are integrating knowledge-based- ...

  20. First- and third-person approaches: the problem of integration

    OpenAIRE

    2012-01-01

    The author discusses the problem of integration of first- and third-person approaches in studying the human mind. She critically evaluates and compares various methodologies for studying and explaining conscious experience. Common strategies that apply reductive explanation seem to be unsatisfied for explaining experience and its subjective character. There were attempts to explain experience from the first-person point of view (introspectionism, philosophical phenomenology) but the results w...

  1. PROBLEMS OF INTEGRATION AT THE FORMER SOVIET UNION

    Directory of Open Access Journals (Sweden)

    Еlena А. Hudorenko

    2015-01-01

    Full Text Available The article provides analysis of historical retrospective of integrationprocesses in former Soviet Union, ways and opportunities for furtherdevelopment thereof.The authors make a study of the problems of development and functioningof Eurasian cooperation, the effectiveness of interaction with certain states,analyze the reasons of failures, emphasize the achievements results ofcooperation, point out the opportunities for integration processes betweendifferent CIS and provide practical recommendations for effectiveness thereof in former Soviet Union.

  2. TRACTABILITY OF MULTIVARIATE INTEGRATION PROBLEM FOR PERIODIC CONTINUOUS FUNCTIONS

    Institute of Scientific and Technical Information of China (English)

    Fang Gensun; Long Jingfan

    2007-01-01

    The authors study the tractability and strong tractability of a multivariate integration problem in the worst case setting for weighted 1-periodic continuous functions spaces of d coordinates with absolutely convergent Fourier series. The authors reduce the initial error by a factor ε for functions from the unit ball of the weighted periodic continuous functions spaces. Tractability is the minimal number of function samples required to solve the problem in polynomial in ε-1 and d, and the strong tractability is the presence of only a polynomial dependence in ε-1. This problem has been recently studied for quasi-Monte Carlo quadrature rules, quadrature rules with non-negative coefficients,and rules for which all quadrature weights are arbitrary for weighted Korobov spaces of smooth periodic functions of d variables. The authors show that the tractability and strong tractability of a multivariate integration problem in worst case setting hold for the weighted periodic continuous functions spaces with absolutely convergent Fourier series under the same assumptions as in Ref. [14] on the weights of the Korobov space for quasi-Monte Carlo rules and rules for which all quadrature weights are non-negative. The arguments are not constructive.

  3. HeLiVa platform: integrated heart-liver-vascular systems for drug testing in human health and disease

    OpenAIRE

    Vunjak-Novakovic, Gordana; Bhatia, Sangeeta; Chen, Christopher; Hirschi, Karen

    2010-01-01

    Our project team is developing an integrated microphysiological platform with functionally connected vascular, liver and cardiac microtissues derived from a single line of human pluripotent stem cells. The platform enables functional representation of human physiology in conjunction with real-time biological readouts (via imaging and homologous reporters for all three cell phenotypes) and compatibility with high-throughput/high-content analysis. In this paper, we summarize progress made over ...

  4. HeLiVa platform: integrated heart-liver-vascular systems for drug testing in human health and disease

    OpenAIRE

    Vunjak-Novakovic, Gordana; Bhatia, Sangeeta; Chen, Christopher; Hirschi, Karen

    2013-01-01

    Our project team is developing an integrated microphysiological platform with functionally connected vascular, liver and cardiac microtissues derived from a single line of human pluripotent stem cells. The platform enables functional representation of human physiology in conjunction with real-time biological readouts (via imaging and homologous reporters for all three cell phenotypes) and compatibility with high-throughput/high-content analysis. In this paper, we summarize progress made over ...

  5. HeLiVa platform: integrated heart-liver-vascular systems for drug testing in human health and disease.

    Science.gov (United States)

    Vunjak-Novakovic, Gordana; Bhatia, Sangeeta; Chen, Christopher; Hirschi, Karen

    2013-01-01

    Our project team is developing an integrated microphysiological platform with functionally connected vascular, liver and cardiac microtissues derived from a single line of human pluripotent stem cells. The platform enables functional representation of human physiology in conjunction with real-time biological readouts (via imaging and homologous reporters for all three cell phenotypes) and compatibility with high-throughput/high-content analysis. In this paper, we summarize progress made over the first year of the grant.

  6. Integrated nanotechnology platform for tumor-targeted multimodal imaging and therapeutic cargo release.

    Science.gov (United States)

    Hosoya, Hitomi; Dobroff, Andrey S; Driessen, Wouter H P; Cristini, Vittorio; Brinker, Lina M; Staquicini, Fernanda I; Cardó-Vila, Marina; D'Angelo, Sara; Ferrara, Fortunato; Proneth, Bettina; Lin, Yu-Shen; Dunphy, Darren R; Dogra, Prashant; Melancon, Marites P; Stafford, R Jason; Miyazono, Kohei; Gelovani, Juri G; Kataoka, Kazunori; Brinker, C Jeffrey; Sidman, Richard L; Arap, Wadih; Pasqualini, Renata

    2016-02-16

    A major challenge of targeted molecular imaging and drug delivery in cancer is establishing a functional combination of ligand-directed cargo with a triggered release system. Here we develop a hydrogel-based nanotechnology platform that integrates tumor targeting, photon-to-heat conversion, and triggered drug delivery within a single nanostructure to enable multimodal imaging and controlled release of therapeutic cargo. In proof-of-concept experiments, we show a broad range of ligand peptide-based applications with phage particles, heat-sensitive liposomes, or mesoporous silica nanoparticles that self-assemble into a hydrogel for tumor-targeted drug delivery. Because nanoparticles pack densely within the nanocarrier, their surface plasmon resonance shifts to near-infrared, thereby enabling a laser-mediated photothermal mechanism of cargo release. We demonstrate both noninvasive imaging and targeted drug delivery in preclinical mouse models of breast and prostate cancer. Finally, we applied mathematical modeling to predict and confirm tumor targeting and drug delivery. These results are meaningful steps toward the design and initial translation of an enabling nanotechnology platform with potential for broad clinical applications.

  7. IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes

    Directory of Open Access Journals (Sweden)

    Jung Kyongyong

    2009-04-01

    Full Text Available Abstract Background Sequences and organization of the mitochondrial genome have been used as markers to investigate evolutionary history and relationships in many taxonomic groups. The rapidly increasing mitochondrial genome sequences from diverse insects provide ample opportunities to explore various global evolutionary questions in the superclass Hexapoda. To adequately support such questions, it is imperative to establish an informatics platform that facilitates the retrieval and utilization of available mitochondrial genome sequence data. Results The Insect Mitochondrial Genome Database (IMGD is a new integrated platform that archives the mitochondrial genome sequences from 25,747 hexapod species, including 112 completely sequenced and 20 nearly completed genomes and 113,985 partially sequenced mitochondrial genomes. The Species-driven User Interface (SUI of IMGD supports data retrieval and diverse analyses at multi-taxon levels. The Phyloviewer implemented in IMGD provides three methods for drawing phylogenetic trees and displays the resulting trees on the web. The SNP database incorporated to IMGD presents the distribution of SNPs and INDELs in the mitochondrial genomes of multiple isolates within eight species. A newly developed comparative SNU Genome Browser supports the graphical presentation and interactive interface for the identified SNPs/INDELs. Conclusion The IMGD provides a solid foundation for the comparative mitochondrial genomics and phylogenetics of insects. All data and functions described here are available at the web site http://www.imgd.org/.

  8. Integrated plasmonic circuitry on a vertical-cavity surface-emitting semiconductor laser platform

    Science.gov (United States)

    McPolin, Cillian P. T.; Bouillard, Jean-Sebastien; Vilain, Sebastien; Krasavin, Alexey V.; Dickson, Wayne; O'Connor, Daniel; Wurtz, Gregory A.; Justice, John; Corbett, Brian; Zayats, Anatoly V.

    2016-08-01

    Integrated plasmonic sources and detectors are imperative in the practical development of plasmonic circuitry for bio- and chemical sensing, nanoscale optical information processing, as well as transducers for high-density optical data storage. Here we show that vertical-cavity surface-emitting lasers (VCSELs) can be employed as an on-chip, electrically pumped source or detector of plasmonic signals, when operated in forward or reverse bias, respectively. To this end, we experimentally demonstrate surface plasmon polariton excitation, waveguiding, frequency conversion and detection on a VCSEL-based plasmonic platform. The coupling efficiency of the VCSEL emission to waveguided surface plasmon polariton modes has been optimized using asymmetric plasmonic nanostructures. The plasmonic VCSEL platform validated here is a viable solution for practical realizations of plasmonic functionalities for various applications, such as those requiring sub-wavelength field confinement, refractive index sensitivity or optical near-field transduction with electrically driven sources, thus enabling the realization of on-chip optical communication and lab-on-a-chip devices.

  9. Optical Beam Deflection Based AFM with Integrated Hardware and Software Platform for an Undergraduate Engineering Laboratory

    Directory of Open Access Journals (Sweden)

    Siu Hong Loh

    2017-02-01

    Full Text Available Atomic force microscopy (AFM has been used extensively in nanoscience research since its invention. Recently, many teaching laboratories in colleges, undergraduate institutions, and even high schools incorporate AFM as an effective teaching tool for nanoscience education. This paper presents an optical beam deflection (OBD based atomic force microscope, designed specifically for the undergraduate engineering laboratory as a teaching instrument. An electronic module for signal conditioning was built with components that are commonly available in an undergraduate electronic laboratory. In addition to off-the-shelf mechanical parts and optics, the design of custom-built mechanical parts waskept as simple as possible. Hence, the overall cost for the setup is greatly reduced. The AFM controller was developed using National Instruments Educational Laboratory Virtual Instrumentation Suite (NI ELVIS, an integrated hardware and software platform which can be programmed in LabVIEW. A simple yet effective control algorithm for scanning and feedback control was developed. Despite the use of an educational platform and low-cost components from the undergraduate laboratory, the developed AFM is capable of performing imaging in constant-force mode with submicron resolution and at reasonable scanning speed (approximately 18 min per image. Therefore, the AFM is suitable to be used as an educational tool for nanoscience. Moreover, the construction of the system can be a valuable educational experience for electronic and mechanical engineering students.

  10. An integrated biomedical knowledge extraction and analysis platform: using federated search and document clustering technology.

    Science.gov (United States)

    Taylor, Donald P

    2007-01-01

    High content screening (HCS) requires time-consuming and often complex iterative information retrieval and assessment approaches to optimally conduct drug discovery programs and biomedical research. Pre- and post-HCS experimentation both require the retrieval of information from public as well as proprietary literature in addition to structured information assets such as compound libraries and projects databases. Unfortunately, this information is typically scattered across a plethora of proprietary bioinformatics tools and databases and public domain sources. Consequently, single search requests must be presented to each information repository, forcing the results to be manually integrated for a meaningful result set. Furthermore, these bioinformatics tools and data repositories are becoming increasingly complex to use; typically they fail to allow for more natural query interfaces. Vivisimo has developed an enterprise software platform to bridge disparate silos of information. The platform automatically categorizes search results into descriptive folders without the use of taxonomies to drive the categorization. A new approach to information retrieval for HCS experimentation is proposed.

  11. New silicon photonics integration platform enabled by novel micron-scale bends

    CERN Document Server

    Cherchi, Matteo; Harjanne, Mikko; Kapulainen, Markku; Aalto, Timo

    2013-01-01

    Even though submicron silicon waveguides have been proposed for dense integration of photonic devices, to date the lightwave circuits on the market mainly rely on waveguides with micron-scale core dimensions. These larger waveguides feature easier fabrication, higher reliability and better interfacing to optical fibres. Single-mode operation with large core dimensions is obtained with low lateral refractive index contrast. Hence, the main limitation in increasing the level of integration and in reducing the cost of micron-scale waveguide circuits is their mm- to cm-scale minimum bending radius. Fortunately, single-mode rib waveguides with a micron-scale silicon core can be locally transformed into multi-mode strip waveguides that have very high lateral index contrast. Here we show how Euler spiral bends realized with these waveguides can have bending radii below 10 {\\mu}m and losses below 0.02 dB/90{\\deg} for the fundamental mode, paving way for a novel densely integrated platform based on micron-scale wavegu...

  12. Multi-tissue interactions in an integrated three-tissue organ-on-a-chip platform.

    Science.gov (United States)

    Skardal, Aleksander; Murphy, Sean V; Devarasetty, Mahesh; Mead, Ivy; Kang, Hyun-Wook; Seol, Young-Joon; Shrike Zhang, Yu; Shin, Su-Ryon; Zhao, Liang; Aleman, Julio; Hall, Adam R; Shupe, Thomas D; Kleensang, Andre; Dokmeci, Mehmet R; Jin Lee, Sang; Jackson, John D; Yoo, James J; Hartung, Thomas; Khademhosseini, Ali; Soker, Shay; Bishop, Colin E; Atala, Anthony

    2017-08-18

    Many drugs have progressed through preclinical and clinical trials and have been available - for years in some cases - before being recalled by the FDA for unanticipated toxicity in humans. One reason for such poor translation from drug candidate to successful use is a lack of model systems that accurately recapitulate normal tissue function of human organs and their response to drug compounds. Moreover, tissues in the body do not exist in isolation, but reside in a highly integrated and dynamically interactive environment, in which actions in one tissue can affect other downstream tissues. Few engineered model systems, including the growing variety of organoid and organ-on-a-chip platforms, have so far reflected the interactive nature of the human body. To address this challenge, we have developed an assortment of bioengineered tissue organoids and tissue constructs that are integrated in a closed circulatory perfusion system, facilitating inter-organ responses. We describe a three-tissue organ-on-a-chip system, comprised of liver, heart, and lung, and highlight examples of inter-organ responses to drug administration. We observe drug responses that depend on inter-tissue interaction, illustrating the value of multiple tissue integration for in vitro study of both the efficacy of and side effects associated with candidate drugs.

  13. Indoor Map Aided Wi-Fi Integrated Lbs on Smartphone Platforms

    Science.gov (United States)

    Yu, C.; El-Sheimy, N.

    2017-09-01

    In this research, an indoor map aided INS/Wi-Fi integrated location based services (LBS) applications is proposed and implemented on smartphone platforms. Indoor map information together with measurements from an inertial measurement unit (IMU) and Received Signal Strength Indicator (RSSI) value from Wi-Fi are collected to obtain an accurate, continuous, and low-cost position solution. The main challenge of this research is to make effective use of various measurements that complement each other without increasing the computational burden of the system. The integrated system in this paper includes three modules: INS, Wi-Fi (if signal available) and indoor maps. A cascade structure Particle/Kalman filter framework is applied to combine the different modules. Firstly, INS position and Wi-Fi fingerprint position integrated through Kalman filter for estimating positioning information. Then, indoor map information is applied to correct the error of INS/Wi-Fi estimated position through particle filter. Indoor tests show that the proposed method can effectively reduce the accumulation positioning errors of stand-alone INS systems, and provide stable, continuous and reliable indoor location service.

  14. Integration of biostatistics and pharmacometrics computing platforms for efficient and reproducible PK/PD analysis: a case study.

    Science.gov (United States)

    Ou, Ying C; Lo, Arthur; Lee, Brian; Liu, Phillip; Kimura, Karen; Eary, Charisse; Hopkins, Alan

    2013-11-01

    Results of pharmacometric analyses influence high-level decisions such as clinical trial design, drug approval, and labeling. Key challenges for timely delivery of pharmacometric analyses are the data assembly process and tracking and documenting the modeling process and results. Since clinical efficacy and safety data typically reside in the biostatistics computing area, an integrated computing platform for pharmacometric and biostatistical analyses would be ideal. A case study is presented integrating a pharmacometric modeling platform into an existing statistical computing environment (SCE). The feasibility and specific configurations of running common PK/PD programs such as NONMEM and R inside of the SCE are provided. The case study provides an example of an integrated repository that facilitates efficient data assembly for pharmacometrics analyses. The proposed platform encourages a good pharmacometrics working practice to maintain transparency, traceability, and reproducibility of PK/PD models and associated data in supporting drug development and regulatory decisions.

  15. Applications integration in a hybrid cloud computing environment: modelling and platform

    Science.gov (United States)

    Li, Qing; Wang, Ze-yuan; Li, Wei-hua; Li, Jun; Wang, Cheng; Du, Rui-yang

    2013-08-01

    With the development of application services providers and cloud computing, more and more small- and medium-sized business enterprises use software services and even infrastructure services provided by professional information service companies to replace all or part of their information systems (ISs). These information service companies provide applications, such as data storage, computing processes, document sharing and even management information system services as public resources to support the business process management of their customers. However, no cloud computing service vendor can satisfy the full functional IS requirements of an enterprise. As a result, enterprises often have to simultaneously use systems distributed in different clouds and their intra enterprise ISs. Thus, this article presents a framework to integrate applications deployed in public clouds and intra ISs. A run-time platform is developed and a cross-computing environment process modelling technique is also developed to improve the feasibility of ISs under hybrid cloud computing environments.

  16. Cross-coupling integral adaptive robust posture control of a pneumatic parallel platform

    Institute of Scientific and Technical Information of China (English)

    左赫; 陶国良

    2016-01-01

    A pneumatic parallel platform driven by an air cylinder and three circumambient pneumatic muscles was considered. Firstly, a mathematical model of the pneumatic servo system was developed for the MIMO nonlinear model-based controller designed. The pneumatic muscles were controlled by three proportional position valves, and the air cylinder was controlled by a proportional pressure valve. As the forward kinematics of this structure had no analytical solution, the control strategy should be designed in joint space. A cross-coupling integral adaptive robust controller (CCIARC) which combined cross-coupling control strategy and traditional adaptive robust control (ARC) theory was developed by back-stepping method to accomplish trajectory tracking control of the parallel platform. The cross-coupling part of the controller stabilized the length error in joint space as well as the synchronization error, and the adaptive robust control part attenuated the adverse effects of modelling error and disturbance. The force character of the pneumatic muscles was difficult to model precisely, so the on-line recursive least square estimation (RLSE) method was employed to modify the model compensation. The projector mapping method was used to condition the RLSE algorithm to bound the parameters estimated. An integral feedback part was added to the traditional robust function to reduce the negative influence of the slow time-varying characteristic of pneumatic muscles and enhance the ability of trajectory tracking. The stability of the controller designed was proved through Laypunov’s theory. Various contrast controllers were designed to testify the newly designed components of the CCIARC. Extensive experiments were conducted to illustrate the performance of the controller.

  17. Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis

    Directory of Open Access Journals (Sweden)

    Qu Lijia

    2009-03-01

    Full Text Available Abstract Background Spectral processing and post-experimental data analysis are the major tasks in NMR-based metabonomics studies. While there are commercial and free licensed software tools available to assist these tasks, researchers usually have to use multiple software packages for their studies because software packages generally focus on specific tasks. It would be beneficial to have a highly integrated platform, in which these tasks can be completed within one package. Moreover, with open source architecture, newly proposed algorithms or methods for spectral processing and data analysis can be implemented much more easily and accessed freely by the public. Results In this paper, we report an open source software tool, Automics, which is specifically designed for NMR-based metabonomics studies. Automics is a highly integrated platform that provides functions covering almost all the stages of NMR-based metabonomics studies. Automics provides high throughput automatic modules with most recently proposed algorithms and powerful manual modules for 1D NMR spectral processing. In addition to spectral processing functions, powerful features for data organization, data pre-processing, and data analysis have been implemented. Nine statistical methods can be applied to analyses including: feature selection (Fisher's criterion, data reduction (PCA, LDA, ULDA, unsupervised clustering (K-Mean and supervised regression and classification (PLS/PLS-DA, KNN, SIMCA, SVM. Moreover, Automics has a user-friendly graphical interface for visualizing NMR spectra and data analysis results. The functional ability of Automics is demonstrated with an analysis of a type 2 diabetes metabolic profile. Conclusion Automics facilitates high throughput 1D NMR spectral processing and high dimensional data analysis for NMR-based metabonomics applications. Using Automics, users can complete spectral processing and data analysis within one software package in most cases

  18. Integrated quadratic assignment and continuous facility layout problem

    Directory of Open Access Journals (Sweden)

    Mohammad Mohammadi

    2012-10-01

    Full Text Available In this paper, an integrated layout model has been considered to incorporate intra and inter-department layout. In the proposed model, the arrangement of facilities within the departments is obtained through the QAP and from the other side the continuous layout problem is implemented to find the position and orientation of rectangular shape departments on the planar area. First, a modified version of QAP with fewer binary variables is presented. Afterward the integrated model is formulated based on the developed QAP. In order to evaluate material handling cost precisely, the actual position of machines within the departments (instead of center of departments is considered. Moreover, other design factors such as aisle distance, single or multi row intra-department layout and orientation of departments have been considered. The mathematical model is formulated as mixed-integer programming (MIP to minimize total material handling cost. Also due to the complexity of integrated model a heuristic method has been developed to solve large scale problems in a reasonable computational time. Finally, several illustrative numerical examples are selected from the literature to test the model and evaluate the heuristic.

  19. Galerkin boundary integral equation method for spontaneous rupture propagation problems

    Science.gov (United States)

    Goto, H.; Bielak, J.

    2007-12-01

    We develop a Galerkin finite element boundary integral equation method (GaBIEM) for spontaneous rupture propagation problems for a planar fault embedded in a homogeneous full 2D space. A simple 2D anti plane rupture propagation problem, with a slip-weakening friction law, is simulated by the GaBIEM. This method allows one to separate explicitly the kernel into singular static and time-dependent parts, and a nonsingular dynamic component. The simulated results throw light into the performance of the GaBIEM and highlight differences with respect to that of the traditional, collocation, boundary integral equation method (BIEM). The rate of convergence of the GaBIEM, as measured from a root mean square (RMS) analysis of the difference of approximate solutions corresponding to increasingly finer element sizes is of a higher order than that of the BIEM. There is no restriction on the CFL stability number since an implicit, unconditionally stable method is used for the time integration. The error of the approximation increases with the time step, as expected, and it can remain below that of the BIEM.

  20. An Integrative Study on Bioinformatics Computing Concepts, Issues and Problems

    Directory of Open Access Journals (Sweden)

    Muhammad Zakarya

    2011-11-01

    Full Text Available Bioinformatics is the permutation and mishmash of biological science and 4IT. The discipline covers every computational tools and techniques used to administer, examine and manipulate huge sets of biological statistics. The discipline also helps in creation of databases to store up and supervise biological statistics, improvement of computer algorithms to find out relations in these databases and use of computer tools for the study and understanding of biological information, including DNA, RNA, protein sequences, gene expression profiles, protein structures, and biochemical pathways. The study of this paper implements an integrative solution. As we know that solution to a problem in a specific discipline may be a solution to another problem in a different discipline. For example entropy that has been rented from physical sciences is solution to most of the problems and issues in computer science. Another example is bioinformatics, where computing method and applications are implemented over biological information. This paper shows an initiative step towards that and will discuss upon the needs for integration of multiple discipline and sciences. Similarly green chemistry gives birth to a new kind of computing i.e. green computing. In next versions of this paper we will study biological fuel cell and will discuss to develop a mobile battery that will be life time charged using the concepts of biological fuel cell. Another issue that we are going to discuss in our series is brain tumor detection. This paper is a review on BI i.e. bioinformatics to start with.

  1. Integrated Fractional Resolvent Operator Function and Fractional Abstract Cauchy Problem

    Directory of Open Access Journals (Sweden)

    Ya-Ning Li

    2014-01-01

    Full Text Available We firstly prove that β-times integrated α-resolvent operator function ((α,β-ROF satisfies a functional equation which extends that of β-times integrated semigroup and α-resolvent operator function. Secondly, for the inhomogeneous α-Cauchy problem cDtαu(t=Au(t+f(t, t∈(0,T, u(0=x0, u'(0=x1, if A is the generator of an (α,β-ROF, we give the relation between the function v(t=Sα,β(tx0+(g1*Sα,β(tx1+(gα-1*Sα,β*f(t and mild solution and classical solution of it. Finally, for the problem cDtαv(t=Av(t+gβ+1(tx, t>0, v(k(0=0, k=0,1,…,N-1, where A is a linear closed operator. We show that A generates an exponentially bounded (α,β-ROF on a Banach space X if and only if the problem has a unique exponentially bounded classical solution vx and Avx∈L loc 1(ℝ+,X. Our results extend and generalize some related results in the literature.

  2. SIM-DSP: A DSP-Enhanced CAD Platform for Signal Integrity Macromodeling and Simulation

    Directory of Open Access Journals (Sweden)

    Chi-Un Lei

    2014-12-01

    Full Text Available Macromodeling-Simulation process for signal integrity verifications has become necessary for the high speed circuit system design. This paper aims to introduce a “VLSI Signal Integrity Macromodeling and Simulation via Digital Signal Processing Techniques” framework (known as SIM-DSP framework, which applies digital signal processing techniques to facilitate the SI verification process in the pre-layout design phase. Core identification modules and peripheral (pre-/post-processing modules have been developed and assembled to form a verification flow. In particular, a single-step discrete cosine transform truncation (DCTT module has been developed for modeling-simulation process. In DCTT, the response modeling problem is classified as a signal compression problem, wherein the system response can be represented by a truncated set of non-pole based DCT bases, and error can be analyzed through Parseval’s theorem. Practical examples are given to show the applicability of our proposed framework.

  3. Modification of Method for Solution of Direct Kinematic Problem for the Type of Platform Manipulators with Six Degrees of Freedom

    Directory of Open Access Journals (Sweden)

    A. L. Lapikov

    2014-01-01

    Full Text Available This paper considers creation of methods for research of multi-section manipulators of parallel structure. To solve this task it is necessary, firstly, to carry out generalization, systematization, and enhancement of existing models of platform manipulators with six degrees of freedom; secondly, it is necessary to modify previously suggested methods for solving the kinematic tasks for the specified type of manipulation mechanisms. The paper presents detailed domain analysis, describes major issues appearing in the course of research, and suggests basic methods of their solution. The paper demonstrates the necessity for modification of existing models through supplementing new parameters. Modification and generalization of the previously suggested method for solution of direct kinematic problem for the specified type of manipulators were carried out. Method for solution of this problem consists in establishing the dependence of functional relationship of Cartesian coordinates and orientation of the moving platform center on the values of generalized coordinates of manipulator (in case of platform manipulators, these are the lengths of telescopic legs connecting the base and the moving platform of the manipulator. The method is created in such a way that solution of direct kinematic problem results in finding of the analytical equation of the plane where the moving platform lies. The equation of the required plane is described through three points (attachment points of the moving platform joints. To define coordinate values of the joints, the system of nine non-linear equations is generated. It should be noted that the system of equations is composed of one-type equations with the same type of nonlinearity. The physical meaning of all the nine equations of the system is Euclidean distance between the points of the manipulator. The location and orientation of the manipulator are depicted as a homogenous transformation matrix. Vectors of translation

  4. Planning lessons with learning platforms - problem and prospects for mathematics education

    DEFF Research Database (Denmark)

    Tamborg, Andreas Lindenskov

    2017-01-01

    This paper investigates how mathematics teachers plan lessons with a recently implemented Danish learning platform designed to support teachers in planning lessons in line with a recent objective-oriented curriculum. Drawing on data from observations of and interviews with teachers, three...... mathematics teachers’ joint planning of a lesson in geometry with a learning platform called Meebook is analyzed using the instrumental approach. It is concluded that the interface in Meebook orients the teachers work toward what the students should do rather than what they should learn, although the latter...... is a key intention behind the implementation of the platform. It is also concluded that when the teachers succeed in using learning objectives actively in their planning, the objectives support the teachers in designing lessons that correspond with their intentions. The paper concludes with a discussion...

  5. Trusted Integrated Circuits:The Problem and Challenges

    Institute of Scientific and Technical Information of China (English)

    吕勇强; 周强; 蔡懿慈; 屈钢

    2014-01-01

    Hardware security has become more and more important in current information security architecture. Recently collected reports have shown that there may have been considerable hardware attacks prepared for possible military usage from all over the world. Due to the intrinsic difference from software security, hardware security has some special features and challenges. In order to guarantee hardware security, academia has proposed the concept of trusted integrated circuits, which aims at a secure circulation of IC design, manufacture and chip using. This paper reviews the main problems of trusted integrated circuits, and concludes four key domains of the trusted IC, namely the trusted IC design, trusted manufacture, trusted IP protection, and trusted chip authentication. The main challenges in those domains are also analyzed based on the current known techniques. Finally, the main limitations of the current techniques and possible future trends are discussed.

  6. Integrated Design Process in Problem-Based Learning

    DEFF Research Database (Denmark)

    Knudstrup, Mary-Ann

    2004-01-01

    This article reports and reflects on the learning achievements and the educational experiences in connection with the first years of the curriculum in Architecture at Aalborg University ?s Civil Engineer Education in Architecture & Design. In the article I will focus on the learning activity.......g. the computer as a tool for designing and optimising the building. I will also consider the dilemma of the Integrated Design Process in Problem Based Learning that emerges when the number of courses in the learning model, as is often the case, clashes with the demand for time and scope for reflection which...... and the method that are developed during the semester when working with an Integrated Design Process combining architecture, design, functional aspects, energy consumption, indoor environment, technology, and construction. I will emphasize the importance of working with different tools in the design process, e...

  7. Purdue Ionomics Information Management System. An Integrated Functional Genomics Platform1[C][W][OA

    Science.gov (United States)

    Baxter, Ivan; Ouzzani, Mourad; Orcun, Seza; Kennedy, Brad; Jandhyala, Shrinivas S.; Salt, David E.

    2007-01-01

    The advent of high-throughput phenotyping technologies has created a deluge of information that is difficult to deal with without the appropriate data management tools. These data management tools should integrate defined workflow controls for genomic-scale data acquisition and validation, data storage and retrieval, and data analysis, indexed around the genomic information of the organism of interest. To maximize the impact of these large datasets, it is critical that they are rapidly disseminated to the broader research community, allowing open access for data mining and discovery. We describe here a system that incorporates such functionalities developed around the Purdue University high-throughput ionomics phenotyping platform. The Purdue Ionomics Information Management System (PiiMS) provides integrated workflow control, data storage, and analysis to facilitate high-throughput data acquisition, along with integrated tools for data search, retrieval, and visualization for hypothesis development. PiiMS is deployed as a World Wide Web-enabled system, allowing for integration of distributed workflow processes and open access to raw data for analysis by numerous laboratories. PiiMS currently contains data on shoot concentrations of P, Ca, K, Mg, Cu, Fe, Zn, Mn, Co, Ni, B, Se, Mo, Na, As, and Cd in over 60,000 shoot tissue samples of Arabidopsis (Arabidopsis thaliana), including ethyl methanesulfonate, fast-neutron and defined T-DNA mutants, and natural accession and populations of recombinant inbred lines from over 800 separate experiments, representing over 1,000,000 fully quantitative elemental concentrations. PiiMS is accessible at www.purdue.edu/dp/ionomics. PMID:17189337

  8. Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

    Science.gov (United States)

    Chatziioannou, Aristotelis; Moulos, Panagiotis; Kolisis, Fragiskos N

    2009-10-27

    The microarray data analysis realm is ever growing through the development of various tools, open source and commercial. However there is absence of predefined rational algorithmic analysis workflows or batch standardized processing to incorporate all steps, from raw data import up to the derivation of significantly differentially expressed gene lists. This absence obfuscates the analytical procedure and obstructs the massive comparative processing of genomic microarray datasets. Moreover, the solutions provided, heavily depend on the programming skills of the user, whereas in the case of GUI embedded solutions, they do not provide direct support of various raw image analysis formats or a versatile and simultaneously flexible combination of signal processing methods. We describe here Gene ARMADA (Automated Robust MicroArray Data Analysis), a MATLAB implemented platform with a Graphical User Interface. This suite integrates all steps of microarray data analysis including automated data import, noise correction and filtering, normalization, statistical selection of differentially expressed genes, clustering, classification and annotation. In its current version, Gene ARMADA fully supports 2 coloured cDNA and Affymetrix oligonucleotide arrays, plus custom arrays for which experimental details are given in tabular form (Excel spreadsheet, comma separated values, tab-delimited text formats). It also supports the analysis of already processed results through its versatile import editor. Besides being fully automated, Gene ARMADA incorporates numerous functionalities of the Statistics and Bioinformatics Toolboxes of MATLAB. In addition, it provides numerous visualization and exploration tools plus customizable export data formats for seamless integration by other analysis tools or MATLAB, for further processing. Gene ARMADA requires MATLAB 7.4 (R2007a) or higher and is also distributed as a stand-alone application with MATLAB Component Runtime. Gene ARMADA provides a

  9. The integration problem: Interlacing language, action and perception

    DEFF Research Database (Denmark)

    Cowley, Stephen

    2014-01-01

    Human thinking uses other peoples' experience. While often pictured as computation or based on the workings of a language-system in the mind or brain, the evidence suggests alternatives to representationalism. In terms proposed here, embodiment is interlaced with wordings as people tackle...... the integration problem. Using a case study, the paper shows how a young man uses external resources in an experimental task. He grasps a well-defined problem by using material resources, talking about his doings and switching roles and procedures. Attentional skills enable him to act as an air cadet who, among...... other things, connects action, leadership and logic. Air- force practices prompt him to draw timeously on non-local resources as, using impersonal experience, he interlaces language, action and perception. He connects the cultural and the metabolic in cognitive work as he finds a way to completion...

  10. T2D-Db: An integrated platform to study the molecular basis of Type 2 diabetes

    Directory of Open Access Journals (Sweden)

    Sriram S

    2008-07-01

    Full Text Available Abstract Background Type 2 Diabetes Mellitus (T2DM is a non insulin dependent, complex trait disease that develops due to genetic predisposition and environmental factors. The advanced stage in type 2 diabetes mellitus leads to several micro and macro vascular complications like nephropathy, neuropathy, retinopathy, heart related problems etc. Studies performed on the genetics, biochemistry and molecular biology of this disease to understand the pathophysiology of type 2 diabetes mellitus has led to the generation of a surfeit of data on candidate genes and related aspects. The research is highly progressive towards defining the exact etiology of this disease. Results T2D-Db (Type 2 diabetes Database is a comprehensive web resource, which provides integrated and curated information on almost all known molecular components involved in the pathogenesis of type 2 diabetes mellitus in the three widely studied mammals namely human, mouse and rat. Information on candidate genes, SNPs (Single Nucleotide Polymorphism in candidate genes or candidate regions, genome wide association studies (GWA, tissue specific gene expression patterns, EST (Expressed Sequence Tag data, expression information from microarray data, pathways, protein-protein interactions and disease associated risk factors or complications have been structured in this on line resource. Conclusion Information available in T2D-Db provides an integrated platform for the better molecular level understanding of type 2 diabetes mellitus and its pathogenesis. Importantly, the resource facilitates graphical presentation of the gene/genome wide map of SNP markers and protein-protein interaction networks, besides providing the heat map diagram of the selected gene(s in an organism across microarray expression experiments from either single or multiple studies. These features aid to the data interpretation in an integrative way. T2D-Db is to our knowledge the first publicly available resource that

  11. Methodological Problems on the Way to Integrative Human Neuroscience

    Science.gov (United States)

    Kotchoubey, Boris; Tretter, Felix; Braun, Hans A.; Buchheim, Thomas; Draguhn, Andreas; Fuchs, Thomas; Hasler, Felix; Hastedt, Heiner; Hinterberger, Thilo; Northoff, Georg; Rentschler, Ingo; Schleim, Stephan; Sellmaier, Stephan; Tebartz Van Elst, Ludger; Tschacher, Wolfgang

    2016-01-01

    Neuroscience is a multidisciplinary effort to understand the structures and functions of the brain and brain-mind relations. This effort results in an increasing amount of data, generated by sophisticated technologies. However, these data enhance our descriptive knowledge, rather than improve our understanding of brain functions. This is caused by methodological gaps both within and between subdisciplines constituting neuroscience, and the atomistic approach that limits the study of macro- and mesoscopic issues. Whole-brain measurement technologies do not resolve these issues, but rather aggravate them by the complexity problem. The present article is devoted to methodological and epistemic problems that obstruct the development of human neuroscience. We neither discuss ontological questions (e.g., the nature of the mind) nor review data, except when it is necessary to demonstrate a methodological issue. As regards intradisciplinary methodological problems, we concentrate on those within neurobiology (e.g., the gap between electrical and chemical approaches to neurophysiological processes) and psychology (missing theoretical concepts). As regards interdisciplinary problems, we suggest that core disciplines of neuroscience can be integrated using systemic concepts that also entail human-environment relations. We emphasize the necessity of a meta-discussion that should entail a closer cooperation with philosophy as a discipline of systematic reflection. The atomistic reduction should be complemented by the explicit consideration of the embodiedness of the brain and the embeddedness of humans. The discussion is aimed at the development of an explicit methodology of integrative human neuroscience, which will not only link different fields and levels, but also help in understanding clinical phenomena. PMID:27965548

  12. Construction of a test platform for Test Blanket Module (TBM) systems integration and maintenance in ITER Port Cell #16

    Energy Technology Data Exchange (ETDEWEB)

    Vála, Ladislav, E-mail: ladislav.vala@cvrez.cz [Centrum výzkumu Řež, Hlavní 130, 250 68 Husinec-Řež (Czech Republic); Reungoat, Mathieu, E-mail: mathieu.reungoat@cvrez.cz [Centrum výzkumu Řež, Hlavní 130, 250 68 Husinec-Řež (Czech Republic); Vician, Martin [Centrum výzkumu Řež, Hlavní 130, 250 68 Husinec-Řež (Czech Republic); Poitevin, Yves; Ricapito, Italo; Zmitko, Milan; Panayotov, Dobromir [Fusion for Energy, Josep Pla 2, Torres Diagonal Litoral B3, 08019 Barcelona (Spain)

    2015-10-15

    Highlights: • A non-nuclear, full size facility – TBM platform – is under construction in CVR. • It is designed for tests, optimization and validation of TBS maintenance operations. • It will allow testing and validation of specific maintenance tools and RH equipment. • It reproduces ITER Port Cell #16, as well as the TBS interfaces and main equipment. • The TBM platform will be available for full operation in the first half of 2016. - Abstract: This paper describes a project of a non-nuclear, 1:1 scale testing platform dedicated to tests, optimization and validation of integration and maintenance operations for the European TBM systems in the ITER Port Cell #16. This TBM platform is currently under construction in Centrum výzkumu Řež, Czech Republic. The facility is realized within the scope of the SUSEN project and its full operation is foreseen in the first half of 2016.

  13. OTEC platform configuration and integration. Appendixes to Volume II. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Price, David

    1978-07-07

    Detailed information and conceptual design drawings for the SPAR and SPHERE platforms for an OTEC commercial plant are presented. A work breakdown structure and a detailed estimate of the SPAR platform weight are included. (WHK)

  14. Microfluidic platforms employing integrated fluorescent or luminescent chemical sensors: a review of methods, scope and applications

    Science.gov (United States)

    Pfeiffer, Simon A.; Nagl, Stefan

    2015-09-01

    Herein we critically review microfluidic platforms that contain integrated fluorescent or luminescent chemical sensor assemblies. These were employed in particular for miniaturized oxygen and pH sensing. Microchips with optical temperature sensing capability are also covered since these share many concepts and applications. Other analytes and derived parameters from the above analytes are found in some sensing approaches in microfluidics. After an introduction, the work is structured into three main chapters dealing with the fabrication and microintegration of these sensors, readout and detection strategies, and applications of these microsystems. The fabrication is discussed with a focus on soft lithography-based approaches in polydimethylsiloxane (PDMS) or PDMS and glass hybrid devices that form the majority of work so far. Alternative approaches, particularly using glass or quartz as the main chip material are also covered. Detection techniques employed to date are the subject of the next chapter, where simple intensity as well as lifetime- or wavelength-referenced schemes are presented and the utility of image-based sensing on the microscale is discussed. Lastly, exciting applications of these microfluidic chips are highlighted. Luminescent oxygen and pH sensing has been of particular interest in the field of microbioreactors but other areas are also of interest, particularly chemical reactors and electrophoresis. Optical temperature sensing is discussed and its use in fundamental studies as well as in enzyme reactors. Integrated microsystems with biosensing capabilities and some for monitoring of metal ions and other analytes are also presented.

  15. Resilient and Robust High Performance Computing Platforms for Scientific Computing Integrity

    Energy Technology Data Exchange (ETDEWEB)

    Jin, Yier [Univ. of Central Florida, Orlando, FL (United States)

    2017-07-14

    As technology advances, computer systems are subject to increasingly sophisticated cyber-attacks that compromise both their security and integrity. High performance computing platforms used in commercial and scientific applications involving sensitive, or even classified data, are frequently targeted by powerful adversaries. This situation is made worse by a lack of fundamental security solutions that both perform efficiently and are effective at preventing threats. Current security solutions fail to address the threat landscape and ensure the integrity of sensitive data. As challenges rise, both private and public sectors will require robust technologies to protect its computing infrastructure. The research outcomes from this project try to address all these challenges. For example, we present LAZARUS, a novel technique to harden kernel Address Space Layout Randomization (KASLR) against paging-based side-channel attacks. In particular, our scheme allows for fine-grained protection of the virtual memory mappings that implement the randomization. We demonstrate the effectiveness of our approach by hardening a recent Linux kernel with LAZARUS, mitigating all of the previously presented side-channel attacks on KASLR. Our extensive evaluation shows that LAZARUS incurs only 0.943% overhead for standard benchmarks, and is therefore highly practical. We also introduced HA2lloc, a hardware-assisted allocator that is capable of leveraging an extended memory management unit to detect memory errors in the heap. We also perform testing using HA2lloc in a simulation environment and find that the approach is capable of preventing common memory vulnerabilities.

  16. Integration of 2D materials on a silicon photonics platform for optoelectronics applications

    Science.gov (United States)

    Youngblood, Nathan; Li, Mo

    2016-12-01

    Owing to enormous growth in both data storage and the demand for high-performance computing, there has been a major effort to integrate telecom networks on-chip. Silicon photonics is an ideal candidate, thanks to the maturity and economics of current CMOS processes in addition to the desirable optical properties of silicon in the near IR. The basics of optical communication require the ability to generate, modulate, and detect light, which is not currently possible with silicon alone. Growing germanium or III/V materials on silicon is technically challenging due to the mismatch between lattice constants and thermal properties. One proposed solution is to use two-dimensional materials, which have covalent bonds in-plane, but are held together by van der Waals forces out of plane. These materials have many unique electrical and optical properties and can be transferred to an arbitrary substrate without lattice matching requirements. This article reviews recent progress toward the integration of 2D materials on a silicon photonics platform for optoelectronic applications.

  17. Systematic Integration of Innovation in Process Improvement Projects Using the Enhanced Sigma-TRIZ Algorithm and Its Effective Use by Means of a Knowledge Management Software Platform

    Directory of Open Access Journals (Sweden)

    Mircea FULEA

    2009-01-01

    Full Text Available In an evolving, highly turbulent and uncertain socio-economic environment, organizations must consider strategies of systematic and continuous integration of innovation within their business systems, as a fundamental condition for sustainable development. Adequate methodologies are required in this respect. A mature framework for integrating innovative problem solving approaches within business process improvement methodologies is proposed in this paper. It considers a TRIZ-centred algorithm in the improvement phase of the DMAIC methodology. The new tool is called enhanced sigma-TRIZ. A case study reveals the practical application of the proposed methodology. The integration of enhanced sigma-TRIZ within a knowledge management software platform (KMSP is further described. Specific developments to support processes of knowledge creation, knowledge storage and retrieval, knowledge transfer and knowledge application in a friendly and effective way within the KMSP are also highlighted.

  18. Practical problems of experimenting with an underwater wireless sensor node platform

    NARCIS (Netherlands)

    Zhang, Kui; Climent, Salvador; Meratnia, Nirvana; Havinga, Paul J.M.

    2011-01-01

    Although in recent years many research activities have been carried out on underwater communication, still many challenges need to be tackled to make the underwater communication suitable for real applications. To this end, availability of an open and well-designed platform and performing realworld

  19. [Problems of evaluating regional integrated care using the example of "Gesundes Kinzigtal Integrated Care"].

    Science.gov (United States)

    Siegel, Achim; Stössel, Ulrich; Schubert, Ingrid; Erler, Antje

    2011-01-01

    "Gesundes Kinzigtal Integrated Care" (GKIC) is one of the few population-based integrated care systems in Germany. The external evaluation of GKIC has a modular design and is coordinated by the Department of Medical Sociology of Freiburg University. In this article we will outline the different evaluation modules and address typical problems arising in the evaluation of regional integrated health care systems. One of these problems is the small size of the intervention population in a recently established pilot care system which makes the use of epidemiologic measures (such as incidence figures) difficult. Total population surveys could alleviate this problem, but when the same intervention population is questioned repeatedly for different evaluation modules, the danger of 'over-surveying' arises. This may lead to decreasing participation in further studies. These problems may be managed by using short survey instruments, by conducting surveys successively (not simultaneously) using time shifts, and by analysing claims data from health insurers. Another problem in the evaluation of comparably small systems of care is how to attribute outcomes (effects) to certain health promotion or disease management programmes: Since participants usually take part in more than one programme, the intervention effect is contaminated by multiple programme effects. These will have to be adjusted for in the final evaluation of the data. Finally, randomised controlled study (RCT) designs frequently cannot be used in the evaluation of a region-wide pilot intervention, so the evidence generated by such a (non-randomised) study is weaker than the evidence generated by an RCT.

  20. A New Integral Transform for Solving Physical Problems

    Science.gov (United States)

    Vastola, John; Efthimiou, Costas

    2015-04-01

    Finding a good integral representation of the reciprocal gamma function is a problem that arises naturally from a certain method of evaluating infinite sums. After finding one representation, and observing that its form is suggestive of an integral transform, we naively define one, and go on to explore its properties. While our transform as we initially define it turns out to be problematic, we demonstrate how to redefine it so that important properties (reminiscent of the Laplace and Fourier transforms) are preserved. Of particular interest is that we may transform any entire function, and that the values of the transform at the nonnegative integers correspond to the function's Taylor coefficients. We may also transform large classes of continuous and meromorphic functions. Interestingly, the aforementioned relationship between a function's transform and a function's Taylor series can be exploited to calculate analytic ``approximations'' to transformable functions. Other topics, like defining the transform for real and complex arguments, and the geometry of transformed functions, are considered. Applications to ordinary and partial differential equations, and related physical problems (from classical mechanics, electrodynamics, and quantum mechanics, among others) are discussed.

  1. A Supply Chain Design Problem Integrated Facility Unavailabilities Management

    Directory of Open Access Journals (Sweden)

    Fouad Maliki

    2016-08-01

    Full Text Available A supply chain is a set of facilities connected together in order to provide products to customers. The supply chain is subject to random failures caused by different factors which cause the unavailability of some sites. Given the current economic context, the management of these unavailabilities is becoming a strategic choice to ensure the desired reliability and availability levels of the different supply chain facilities. In this work, we treat two problems related to the field of supply chain, namely the design and unavailabilities management of logistics facilities. Specifically, we consider a stochastic distribution network with consideration of suppliers' selection, distribution centres location (DCs decisions and DCs’ unavailabilities management. Two resolution approaches are proposed. The first approach called non-integrated consists on define the optimal supply chain structure using an optimization approach based on genetic algorithms (GA, then to simulate the supply chain performance with the presence of DCs failures. The second approach called integrated approach is to consider the design of the supply chain problem and unavailabilities management of DCs in the same model. Note that, we replace each unavailable DC by performing a reallocation using GA in the two approaches. The obtained results of the two approaches are detailed and compared showing their effectiveness.

  2. A web platform for integrated surface water - groundwater modeling and data management

    Science.gov (United States)

    Fatkhutdinov, Aybulat; Stefan, Catalin; Junghanns, Ralf

    2016-04-01

    Model-based decision support systems are considered to be reliable and time-efficient tools for resources management in various hydrology related fields. However, searching and acquisition of the required data, preparation of the data sets for simulations as well as post-processing, visualization and publishing of the simulations results often requires significantly more work and time than performing the modeling itself. The purpose of the developed software is to combine data storage facilities, data processing instruments and modeling tools in a single platform which potentially can reduce time required for performing simulations, hence decision making. The system is developed within the INOWAS (Innovative Web Based Decision Support System for Water Sustainability under a Changing Climate) project. The platform integrates spatially distributed catchment scale rainfall - runoff, infiltration and groundwater flow models with data storage, processing and visualization tools. The concept is implemented in a form of a web-GIS application and is build based on free and open source components, including the PostgreSQL database management system, Python programming language for modeling purposes, Mapserver for visualization and publishing the data, Openlayers for building the user interface and others. Configuration of the system allows performing data input, storage, pre- and post-processing and visualization in a single not disturbed workflow. In addition, realization of the decision support system in the form of a web service provides an opportunity to easily retrieve and share data sets as well as results of simulations over the internet, which gives significant advantages for collaborative work on the projects and is able to significantly increase usability of the decision support system.

  3. The development and implementation of MOSAIQ Integration Platform (MIP) based on the radiotherapy workflow

    Science.gov (United States)

    Yang, Xin; He, Zhen-yu; Jiang, Xiao-bo; Lin, Mao-sheng; Zhong, Ning-shan; Hu, Jiang; Qi, Zhen-yu; Bao, Yong; Li, Qiao-qiao; Li, Bao-yue; Hu, Lian-ying; Lin, Cheng-guang; Gao, Yuan-hong; Liu, Hui; Huang, Xiao-yan; Deng, Xiao-wu; Xia, Yun-fei; Liu, Meng-zhong; Sun, Ying

    2017-03-01

    To meet the special demands in China and the particular needs for the radiotherapy department, a MOSAIQ Integration Platform CHN (MIP) based on the workflow of radiation therapy (RT) has been developed, as a supplement system to the Elekta MOSAIQ. The MIP adopts C/S (client-server) structure mode, and its database is based on the Treatment Planning System (TPS) and MOSAIQ SQL Server 2008, running on the hospital local network. Five network servers, as a core hardware, supply data storage and network service based on the cloud services. The core software, using C# programming language, is developed based on Microsoft Visual Studio Platform. The MIP server could offer network service, including entry, query, statistics and print information for about 200 workstations at the same time. The MIP was implemented in the past one and a half years, and some practical patient-oriented functions were developed. And now the MIP is almost covering the whole workflow of radiation therapy. There are 15 function modules, such as: Notice, Appointment, Billing, Document Management (application/execution), System Management, and so on. By June of 2016, recorded data in the MIP are as following: 13546 patients, 13533 plan application, 15475 RT records, 14656 RT summaries, 567048 billing records and 506612 workload records, etc. The MIP based on the RT workflow has been successfully developed and clinically implemented with real-time performance, data security, stable operation. And it is demonstrated to be user-friendly and is proven to significantly improve the efficiency of the department. It is a key to facilitate the information sharing and department management. More functions can be added or modified for further enhancement its potentials in research and clinical practice.

  4. A platform to integrate climate information and rural telemedicine in Malawi

    Science.gov (United States)

    Lowe, R.; Chadza, T.; Chirombo, J.; Fonda, C.; Muyepa, A.; Nkoloma, M.; Pietrosemoli, E.; Radicella, S. M.; Tompkins, A. M.; Zennaro, M.

    2012-04-01

    It is commonly accepted that climate plays a role in the transmission of many infectious diseases, particularly those transmitted by mosquitoes such as malaria, which is one of the most important causes of mortality and morbidity in developing countries. Due to time lags involved in the climate-disease transmission system, lagged observed climate variables could provide some predictive lead for forecasting disease epidemics. This lead time could be extended by using forecasts of the climate in disease prediction models. This project aims to implement a platform for the dissemination of climate-driven disease risk forecasts, using a telemedicine approach. A pilot project has been established in Malawi, where a 162 km wireless link has been installed, spanning from Blantyre City to remote health facilities in the district of Mangochi in the Southern region, bordering Lake Malawi. This long Wi-Fi technology allows rural health facilities to upload real-time disease cases as they occur to an online health information system (DHIS2); a national medical database repository administered by the Ministry of Health. This technology provides a real-time data logging system for disease incidence monitoring and facilitates the flow of information between local and national levels. This platform allows statistical and dynamical disease prediction models to be rapidly updated with real-time climate and epidemiological information. This permits health authorities to target timely interventions ahead of an imminent increase in malaria incidence. By integrating meteorological and health information systems in a statistical-dynamical prediction model, we show that a long-distance Wi-Fi link is a practical and inexpensive means to enable the rapid analysis of real-time information in order to target disease prevention and control measures and mobilise resources at the local level.

  5. Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.

    Science.gov (United States)

    Nagamura, Yoshiaki; Antonio, Baltazar A; Sato, Yutaka; Miyao, Akio; Namiki, Nobukazu; Yonemaru, Jun-ichi; Minami, Hiroshi; Kamatsuki, Kaori; Shimura, Kan; Shimizu, Yuji; Hirochika, Hirohiko

    2011-02-01

    The Rice TOGO Browser is an online public resource designed to facilitate integration and visualization of mapping data of bacterial artificial chromosome (BAC)/P1-derived artificial chromosome (PAC) clones, genes, restriction fragment length polymorphism (RFLP)/simple sequence repeat (SSR) markers and phenotype data represented as quantitative trait loci (QTLs) onto the genome sequence, and to provide a platform for more efficient utilization of genome information from the point of view of applied genomics as well as functional genomics. Three search options, namely keyword search, region search and trait search, generate various types of data in a user-friendly interface with three distinct viewers, a chromosome viewer, an integrated map viewer and a sequence viewer, thereby providing the opportunity to view the position of genes and/or QTLs at the chromosomal level and to retrieve any sequence information in a user-defined genome region. Furthermore, the gene list, marker list and genome sequence in a specified region delineated by RFLP/SSR markers and any sequences designed as primers can be viewed and downloaded to support forward genetics approaches. An additional feature of this database is the graphical viewer for BLAST search to reveal information not only for regions with significant sequence similarity but also for regions adjacent to those with similarity but with no hits between sequences. An easy to use and intuitive user interface can help a wide range of users in retrieving integrated mapping information including agronomically important traits on the rice genome sequence. The database can be accessed at http://agri-trait.dna.affrc.go.jp/.

  6. Design of a Maglev Vibration Test Platform for the Research of Maglev Vehicle-girder Coupled Vibration Problem

    Directory of Open Access Journals (Sweden)

    Zhou Danfeng

    2017-01-01

    Full Text Available The maglev vehicle-girder coupled vibration problem has been encountered in many maglev test or commercial lines, which significantly degrade the performance of the maglev train. In previous research on the principle of the coupled vibration problem, it has been discovered that the fundamental model of the maglev girder can be simplified as a series of mass-spring resonators of different but related resonance frequencies, and that the stability of the vehicle-girder coupled system can be investigated by separately examining the stability of each mass-spring resonator – electromagnet coupled system. Based on this conclusion, a maglev test platform, which includes a single electromagnetic suspension control system, is built for experimental study of the coupled vibration problem. The guideway of the test platform is supported by a number of springs so as to change its flexibility. The mass of the guideway can also be changed by adjusting extra weights attached to it. By changing the flexibility and mass of the guideway, the rules of the maglev vehicle-girder coupled vibration problem are to be examined through experiments, and related theory on the vehicle-girder self-excited vibration proposed in previous research is also testified.

  7. Managing the computational chemistry big data problem: the ioChem-BD platform.

    Science.gov (United States)

    Álvarez-Moreno, M; de Graaf, C; López, N; Maseras, F; Poblet, J M; Bo, C

    2015-01-26

    We present the ioChem-BD platform ( www.iochem-bd.org ) as a multiheaded tool aimed to manage large volumes of quantum chemistry results from a diverse group of already common simulation packages. The platform has an extensible structure. The key modules managing the main tasks are to (i) upload of output files from common computational chemistry packages, (ii) extract meaningful data from the results, and (iii) generate output summaries in user-friendly formats. A heavy use of the Chemical Mark-up Language (CML) is made in the intermediate files used by ioChem-BD. From them and using XSL techniques, we manipulate and transform such chemical data sets to fulfill researchers' needs in the form of HTML5 reports, supporting information, and other research media.

  8. LabKey Server: An open source platform for scientific data integration, analysis and collaboration

    Directory of Open Access Journals (Sweden)

    Lum Karl

    2011-03-01

    Full Text Available Abstract Background Broad-based collaborations are becoming increasingly common among disease researchers. For example, the Global HIV Enterprise has united cross-disciplinary consortia to speed progress towards HIV vaccines through coordinated research across the boundaries of institutions, continents and specialties. New, end-to-end software tools for data and specimen management are necessary to achieve the ambitious goals of such alliances. These tools must enable researchers to organize and integrate heterogeneous data early in the discovery process, standardize processes, gain new insights into pooled data and collaborate securely. Results To meet these needs, we enhanced the LabKey Server platform, formerly known as CPAS. This freely available, open source software is maintained by professional engineers who use commercially proven practices for software development and maintenance. Recent enhancements support: (i Submitting specimens requests across collaborating organizations (ii Graphically defining new experimental data types, metadata and wizards for data collection (iii Transitioning experimental results from a multiplicity of spreadsheets to custom tables in a shared database (iv Securely organizing, integrating, analyzing, visualizing and sharing diverse data types, from clinical records to specimens to complex assays (v Interacting dynamically with external data sources (vi Tracking study participants and cohorts over time (vii Developing custom interfaces using client libraries (viii Authoring custom visualizations in a built-in R scripting environment. Diverse research organizations have adopted and adapted LabKey Server, including consortia within the Global HIV Enterprise. Atlas is an installation of LabKey Server that has been tailored to serve these consortia. It is in production use and demonstrates the core capabilities of LabKey Server. Atlas now has over 2,800 active user accounts originating from approximately 36

  9. A platform for population-based weight management: description of a health plan-based integrated systems approach.

    Science.gov (United States)

    Pronk, Nicolaas P; Boucher, Jackie L; Gehling, Eve; Boyle, Raymond G; Jeffery, Robert W

    2002-10-01

    To describe an integrated, operational platform from which mail- and telephone-based health promotion programs are implemented and to specifically relate this approach to weight management programming in a managed care setting. In-depth description of essential systems structures, including people, computer technology, and decision-support protocols. The roles of support staff, counselors, a librarian, and a manager in delivering a weight management program are described. Information availability using computer technology is a critical component in making this system effective and is presented according to its architectural layout and design. Protocols support counselors and administrative support staff in decision making, and a detailed flowchart presents the layout of this part of the system. This platform is described in the context of a weight management program, and we present baseline characteristics of 1801 participants, their behaviors, self-reported medical conditions, and initial pattern of enrollment in the various treatment options. Considering the prevalence and upward trend of overweight and obesity in the United States, a need exists for robust intervention platforms that can systematically support multiple types of programs. Weight management interventions implemented using this platform are scalable to the population level and are sustainable over time despite the limits of defined resources and budgets. The present article describes an innovative approach to reaching a large population with effective programs in an integrated, coordinated, and systematic manner. This comprehensive, robust platform represents an example of how obesity prevention and treatment research may be translated into the applied setting.

  10. Integrated Cognitive-neuroscience Architectures for Understanding Sensemaking (ICArUS): Phase 1 Challenge Problem Walkthrough

    Science.gov (United States)

    2014-11-01

    Integrated Cognitive- neuroscience Architectures for Understanding Sensemaking (ICArUS): Phase 1 Challenge Problem Walkthrough Kevin Burns...4. TITLE AND SUBTITLE Integrated Cognitive- neuroscience Architectures for Understanding Sensemaking (ICArUS): Phase 1 Challenge Problem Walkthrough...Integrated Cognitive- neuroscience Architectures for Understanding Sensemaking (ICArUS) Phase 1 challenge problem. The pages include screen shots

  11. First- and Third-person Approaches: the Problem of Integration

    Directory of Open Access Journals (Sweden)

    Olga Markič

    2012-10-01

    Full Text Available The author discusses the problem of integration of first- and third-person approaches in studying the human mind. She critically evaluates and compares various methodologies for studying and explaining conscious experience. Common strategies that apply reductive explanation seem to be unsatisfied for explaining experience and its subjective character. There were attempts to explain experience from the first-person point of view (introspectionism, philosophical phenomenology but the results were not intersubjectively verifiable. Dennett proposed heterophenomenology as a scientifically viable alternative which supposed to bridge the gap between first- and third-person perspectives. The author critically evaluates his proposal and compares it to contemporary attempts to provide first-person methods.

  12. IMPACT_S: integrated multiprogram platform to analyze and combine tests of selection.

    Science.gov (United States)

    Maldonado, Emanuel; Sunagar, Kartik; Almeida, Daniela; Vasconcelos, Vitor; Antunes, Agostinho

    2014-01-01

    Among the major goals of research in evolutionary biology are the identification of genes targeted by natural selection and understanding how various regimes of evolution affect the fitness of an organism. In particular, adaptive evolution enables organisms to adapt to changing ecological factors such as diet, temperature, habitat, predatory pressures and prey abundance. An integrative approach is crucial for the identification of non-synonymous mutations that introduce radical changes in protein biochemistry and thus in turn influence the structure and function of proteins. Performing such analyses manually is often a time-consuming process, due to the large number of statistical files generated from multiple approaches, especially when assessing numerous taxa and/or large datasets. We present IMPACT_S, an easy-to-use Graphical User Interface (GUI) software, which rapidly and effectively integrates, filters and combines results from three widely used programs for assessing the influence of selection: Codeml (PAML package), Datamonkey and TreeSAAP. It enables the identification and tabulation of sites detected by these programs as evolving under the influence of positive, neutral and/or negative selection in protein-coding genes. IMPACT_S further facilitates the automatic mapping of these sites onto the three-dimensional structures of proteins. Other useful tools incorporated in IMPACT_S include Jmol, Archaeopteryx, Gnuplot, PhyML, a built-in Swiss-Model interface and a PDB downloader. The relevance and functionality of IMPACT_S is shown through a case study on the toxicoferan-reptilian Cysteine-rich Secretory Proteins (CRiSPs). IMPACT_S is a platform-independent software released under GPLv3 license, freely available online from http://impact-s.sourceforge.net.

  13. IMPACT_S: integrated multiprogram platform to analyze and combine tests of selection.

    Directory of Open Access Journals (Sweden)

    Emanuel Maldonado

    Full Text Available Among the major goals of research in evolutionary biology are the identification of genes targeted by natural selection and understanding how various regimes of evolution affect the fitness of an organism. In particular, adaptive evolution enables organisms to adapt to changing ecological factors such as diet, temperature, habitat, predatory pressures and prey abundance. An integrative approach is crucial for the identification of non-synonymous mutations that introduce radical changes in protein biochemistry and thus in turn influence the structure and function of proteins. Performing such analyses manually is often a time-consuming process, due to the large number of statistical files generated from multiple approaches, especially when assessing numerous taxa and/or large datasets. We present IMPACT_S, an easy-to-use Graphical User Interface (GUI software, which rapidly and effectively integrates, filters and combines results from three widely used programs for assessing the influence of selection: Codeml (PAML package, Datamonkey and TreeSAAP. It enables the identification and tabulation of sites detected by these programs as evolving under the influence of positive, neutral and/or negative selection in protein-coding genes. IMPACT_S further facilitates the automatic mapping of these sites onto the three-dimensional structures of proteins. Other useful tools incorporated in IMPACT_S include Jmol, Archaeopteryx, Gnuplot, PhyML, a built-in Swiss-Model interface and a PDB downloader. The relevance and functionality of IMPACT_S is shown through a case study on the toxicoferan-reptilian Cysteine-rich Secretory Proteins (CRiSPs. IMPACT_S is a platform-independent software released under GPLv3 license, freely available online from http://impact-s.sourceforge.net.

  14. Assessment of cisplatin-induced kidney injury using an integrated rodent platform

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Yafei [Global Safety Assessment, AstraZeneca R and D Waltham, MA 02451 (United States); Brott, David [Patient Safety, AstraZeneca R and D Wilmington, DE 19850 (United States); Luo, Wenli [Discovery Statistics, AstraZeneca R and D Waltham, MA 02451 (United States); Gangl, Eric [DMPK, AstraZeneca R and D Waltham, MA 02451 (United States); Kamendi, Harriet; Barthlow, Herbert; Lengel, David; Fikes, James; Kinter, Lewis [Global Safety Assessment, AstraZeneca R and D Waltham, MA 02451 (United States); Valentin, Jean-Pierre [Global Safety Assessment, AstraZeneca R and D Alderley Park, Macclesfield, SK10 4TG (United Kingdom); Bialecki, Russell, E-mail: russell.bialecki@astrazeneca.com [Global Safety Assessment, AstraZeneca R and D Waltham, MA 02451 (United States)

    2013-05-01

    Current diagnosis of drug-induced kidney injury (DIKI) primarily relies on detection of elevated plasma creatinine (Cr) or blood urea nitrogen (BUN) levels; however, both are indices of overall kidney function and changes are delayed with respect to onset of nephron injury. Our aim was to investigate whether early changes in new urinary DIKI biomarkers predict plasma Cr, BUN, renal hemodynamic and kidney morphological changes associated with kidney injury following a single dose of cisplatin (CDDP) using an integrated platform in rodent. Conscious surgically prepared male Han Wistar rats were given a single intraperitoneal dose of CDDP (15 mg/kg). Glomerular filtration rate (GFR), effective renal plasma flow (ERPF), urinalysis, DIKI biomarkers, CDDP pharmacokinetics, blood pressures, heart rate, body temperature and electroencephalogram (EEG) were measured in the same vehicle- or CDDP-treated animals over 72 h. Plasma chemistry (including Cr and BUN) and renal tissues were examined at study termination. Cisplatin caused progressive reductions of GFR, ERPF, heart rate and body temperature from day 1 (0–24 h). DIKI biomarkers including alpha-glutathione S-transferase (α-GST) significantly increased as early as 6 h post-dose, which preceded significant declines of GFR and ERPF (24 h), increased plasma Cr and BUN (72 h), and associated with renal acute tubular necrosis at 72 h post-dose. The present study adds to the current understanding of CDDP action by demonstrating that early increases in urinary excretion of α-GST predict DIKI risk following acute exposure to CDDP in rats, before changes in traditional DIKI markers are evident. - Highlights: ► CDDP causes direct damage to kidneys without affecting EEG or CVS function. ► α-GST and albumin detect DIKI earlier when compared with traditional indices. ► Integrated “cardiovascular-EEG-renal” model to better understand DIKI mechanisms ► Promotes 3R's principles in drug discovery and development.

  15. A MEMS-Based Flow Rate and Flow Direction Sensing Platform with Integrated Temperature Compensation Scheme

    Directory of Open Access Journals (Sweden)

    Chia-Yen Lee

    2009-07-01

    Full Text Available This study develops a MEMS-based low-cost sensing platform for sensing gas flow rate and flow direction comprising four silicon nitride cantilever beams arranged in a cross-form configuration, a circular hot-wire flow meter suspended on a silicon nitride membrane, and an integrated resistive temperature detector (RTD. In the proposed device, the flow rate is inversely derived from the change in the resistance signal of the flow meter when exposed to the sensed air stream. To compensate for the effects of the ambient temperature on the accuracy of the flow rate measurements, the output signal from the flow meter is compensated using the resistance signal generated by the RTD. As air travels over the surface of the cross-form cantilever structure, the upstream cantilevers are deflected in the downward direction, while the downstream cantilevers are deflected in the upward direction. The deflection of the cantilever beams causes a corresponding change in the resistive signals of the piezoresistors patterned on their upper surfaces. The amount by which each beam deflects depends on both the flow rate and the orientation of the beam relative to the direction of the gas flow. Thus, following an appropriate compensation by the temperature-corrected flow rate, the gas flow direction can be determined through a suitable manipulation of the output signals of the four piezoresistors. The experimental results have confirmed that the resulting variation in the output signals of the integrated sensors can be used to determine not only the ambient temperature and the velocity of the air flow, but also its direction relative to the sensor with an accuracy of ± 7.5o error.

  16. A MEMS-Based Flow Rate and Flow Direction Sensing Platform with Integrated Temperature Compensation Scheme.

    Science.gov (United States)

    Ma, Rong-Hua; Wang, Dung-An; Hsueh, Tzu-Han; Lee, Chia-Yen

    2009-01-01

    This study develops a MEMS-based low-cost sensing platform for sensing gas flow rate and flow direction comprising four silicon nitride cantilever beams arranged in a cross-form configuration, a circular hot-wire flow meter suspended on a silicon nitride membrane, and an integrated resistive temperature detector (RTD). In the proposed device, the flow rate is inversely derived from the change in the resistance signal of the flow meter when exposed to the sensed air stream. To compensate for the effects of the ambient temperature on the accuracy of the flow rate measurements, the output signal from the flow meter is compensated using the resistance signal generated by the RTD. As air travels over the surface of the cross-form cantilever structure, the upstream cantilevers are deflected in the downward direction, while the downstream cantilevers are deflected in the upward direction. The deflection of the cantilever beams causes a corresponding change in the resistive signals of the piezoresistors patterned on their upper surfaces. The amount by which each beam deflects depends on both the flow rate and the orientation of the beam relative to the direction of the gas flow. Thus, following an appropriate compensation by the temperature-corrected flow rate, the gas flow direction can be determined through a suitable manipulation of the output signals of the four piezoresistors. The experimental results have confirmed that the resulting variation in the output signals of the integrated sensors can be used to determine not only the ambient temperature and the velocity of the air flow, but also its direction relative to the sensor with an accuracy of ± 7.5° error.

  17. Integrating the New Generation of Isolde Controls into a Multi-Platform Environment

    CERN Document Server

    Deloose, I

    1996-01-01

    The CERN ISOLDE isotope separator facility has been relocated on the PS Booster machine and commissioned in spring 1992. Since then, the Isolde equipment is controlled by Front End Computers running DOS and desktop PCs, also named consoles, running Windows 3.1 as graphical user interface. Because of the success of the powerful development tools used at Isolde on the Windows platform (Visual Basic, Excel...), the desktop architecture has been extended to access the UNIX based PS control system through an access controlled ³gateway² computer. Linked to the introduction of Windows 95 at CERN, the Console - Equipment (FEC) computer communication model has been redesigned with enhanced performances and new features. The gradual replacement of IPX/SPX by TCP/IP as client-server communication protocol created new perspectives, like equipment access from the World Wide Web or through a wireless telephone connection. This report will explain the evolution from the initial ISOLDE control system up to its integration ...

  18. An integrated telemedicine platform for the assessment of affective physiological states.

    Science.gov (United States)

    Katsis, Christos D; Ganiatsas, George; Fotiadis, Dimitrios I

    2006-08-01

    AUBADE is an integrated platform built for the affective assessment of individuals. The system performs evaluation of the emotional state by classifying vectors of features extracted from: facial Electromyogram, Respiration, Electrodermal Activity and Electrocardiogram. The AUBADE system consists of: (a) a multisensorial wearable, (b) a data acquisition and wireless communication module, (c) a feature extraction module, (d) a 3D facial animation module which is used for the projection of the obtained data through a generic 3D face model; whereas the end-user will be able to view the facial expression of the subject in real time, (e) an intelligent emotion recognition module, and (f) the AUBADE databases where the acquired signals along with the subject's animation videos are saved. The system is designed to be applied to human subjects operating under extreme stress conditions, in particular car racing drivers, and also to patients suffering from neurological and psychological disorders. AUBADE's classification accuracy into five predefined emotional classes (high stress, low stress, disappointment, euphoria and neutral face) is 86.0%. The pilot system applications and components are being tested and evaluated on Maserati's car racing drivers.

  19. An Integrated Approach to Fatigue Life Prediction of Whole System for Offshore Platforms

    Institute of Scientific and Technical Information of China (English)

    方华灿; 段梦兰; 许发彦; 吴永宁; 樊晓东

    2001-01-01

    The failure of one or even more components usually does not lead to the collapse of the whole structure. Most of theanalysis of fatigue is centered on only a single component which the researchers are interested in or much attentionshould be paid to. However, the collapse of a structure is the result of failure of a series of components in a specific orderor path. This paper proposes an integrated approach to fatigue life prediction of whole structural system for offshoreplatforms, mainly describing the basic principles and prediction method. A method is presented for determining the fail-ure path of the whole structure system and calculating the fatigue life in the determined failure path. The correspondingfinal collapse criteria for the whole structure system are discussed. A simple method of equivalent fatigue stress range cal-culation and a mathematical model of structural component fatigue life estimation in consideration of sea wave and seaice loads are provided. As an application of the proposed approach, a fixed production platform Bohai No. 8 is chosenfor the predication of fatigue life of the whole structure system by means of the software OSFAC developed based on thepresent methods.

  20. Systems Biology as an Integrated Platform for Bioinformatics, Systems Synthetic Biology, and Systems Metabolic Engineering

    Directory of Open Access Journals (Sweden)

    Bor-Sen Chen

    2013-10-01

    Full Text Available Systems biology aims at achieving a system-level understanding of living organisms and applying this knowledge to various fields such as synthetic biology, metabolic engineering, and medicine. System-level understanding of living organisms can be derived from insight into: (i system structure and the mechanism of biological networks such as gene regulation, protein interactions, signaling, and metabolic pathways; (ii system dynamics of biological networks, which provides an understanding of stability, robustness, and transduction ability through system identification, and through system analysis methods; (iii system control methods at different levels of biological networks, which provide an understanding of systematic mechanisms to robustly control system states, minimize malfunctions, and provide potential therapeutic targets in disease treatment; (iv systematic design methods for the modification and construction of biological networks with desired behaviors, which provide system design principles and system simulations for synthetic biology designs and systems metabolic engineering. This review describes current developments in systems biology, systems synthetic biology, and systems metabolic engineering for engineering and biology researchers. We also discuss challenges and future prospects for systems biology and the concept of systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering.

  1. Material gain engineering in GeSn/Ge quantum wells integrated with an Si platform

    Science.gov (United States)

    Mączko, H. S.; Kudrawiec, R.; Gladysiewicz, M.

    2016-09-01

    It is shown that compressively strained Ge1‑xSnx/Ge quantum wells (QWs) grown on a Ge substrate with 0.1 ≤ x ≤ 0.2 and width of 8 nm ≤ d ≤ 14 nm are a very promising gain medium for lasers integrated with an Si platform. Such QWs are type-I QWs with a direct bandgap and positive transverse electric mode of material gain, i.e. the modal gain. The electronic band structure near the center of Brillouin zone has been calculated for various Ge1‑xSnx/Ge QWs with use of the 8-band kp Hamiltonian. To calculate the material gain for these QWs, occupation of the L valley in Ge barriers has been taken into account. It is clearly shown that this occupation has a lot of influence on the material gain in the QWs with low Sn concentrations (Sn  15%). However, for QWs with Sn > 20% the critical thickness of a GeSn layer deposited on a Ge substrate starts to play an important role. Reduction in the QW width shifts up the ground electron subband in the QW and increases occupation of the L valley in the barriers instead of the Γ valley in the QW region.

  2. Systems Biology as an Integrated Platform for Bioinformatics, Systems Synthetic Biology, and Systems Metabolic Engineering

    Science.gov (United States)

    Chen, Bor-Sen; Wu, Chia-Chou

    2013-01-01

    Systems biology aims at achieving a system-level understanding of living organisms and applying this knowledge to various fields such as synthetic biology, metabolic engineering, and medicine. System-level understanding of living organisms can be derived from insight into: (i) system structure and the mechanism of biological networks such as gene regulation, protein interactions, signaling, and metabolic pathways; (ii) system dynamics of biological networks, which provides an understanding of stability, robustness, and transduction ability through system identification, and through system analysis methods; (iii) system control methods at different levels of biological networks, which provide an understanding of systematic mechanisms to robustly control system states, minimize malfunctions, and provide potential therapeutic targets in disease treatment; (iv) systematic design methods for the modification and construction of biological networks with desired behaviors, which provide system design principles and system simulations for synthetic biology designs and systems metabolic engineering. This review describes current developments in systems biology, systems synthetic biology, and systems metabolic engineering for engineering and biology researchers. We also discuss challenges and future prospects for systems biology and the concept of systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering. PMID:24709875

  3. Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering.

    Science.gov (United States)

    Chen, Bor-Sen; Wu, Chia-Chou

    2013-10-11

    Systems biology aims at achieving a system-level understanding of living organisms and applying this knowledge to various fields such as synthetic biology, metabolic engineering, and medicine. System-level understanding of living organisms can be derived from insight into: (i) system structure and the mechanism of biological networks such as gene regulation, protein interactions, signaling, and metabolic pathways; (ii) system dynamics of biological networks, which provides an understanding of stability, robustness, and transduction ability through system identification, and through system analysis methods; (iii) system control methods at different levels of biological networks, which provide an understanding of systematic mechanisms to robustly control system states, minimize malfunctions, and provide potential therapeutic targets in disease treatment; (iv) systematic design methods for the modification and construction of biological networks with desired behaviors, which provide system design principles and system simulations for synthetic biology designs and systems metabolic engineering. This review describes current developments in systems biology, systems synthetic biology, and systems metabolic engineering for engineering and biology researchers. We also discuss challenges and future prospects for systems biology and the concept of systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering.

  4. Integrated cell-based platform to study EGFR activation and transactivation.

    Science.gov (United States)

    Caruso, Marie-Elaine; Clément, Paule; Parent, Stéphane; Dupriez, Vincent; Bossé, Roger; Rouleau, Nathalie

    2013-09-01

    The epidermal growth factor receptor (EGFR) pathway is one of the most deregulated molecular pathways in human epithelial cancers. Many approved drugs were optimized to directly target EGFR but yielded only modest clinical improvement in cancer patients due to low efficacy and drug resistance. Transactivation of EGFR by other cell surface receptors such as G-protein-coupled receptors (GPCRs) was proposed to explain this lack of efficacy. Even if direct EGFR activation and transactivation by GPCR contribute to the activation of the same signaling pathways, they are often studied as independent events resulting in partial investigation of a drug's mechanism of action. We present a novel high-throughput approach that integrates interrogation of direct activation of EGFR and its transactivation via GPCR activation. Using distinct technology platforms, three readouts were used to measure (1) direct activation of GPCR via cyclic adenosine monophosphate (cAMP) detection, (2) direct activation of EGFR through the release of intracellular Ca(2+), and (3) EGFR transactivation by GPCR using the detection of p-extracellular-signal-regulated kinases 1/2 (p-ERK1/2). In addition to being simple, quick, and homogenous, our methods were shown to be more sensitive than those in current use. These enabling tools should improve the knowledge pertaining to GPCRs and receptor tyrosine kinases trans-regulation and facilitate the design of more potent and better targeted new therapeutic strategies.

  5. A Semantic Big Data Platform for Integrating Heterogeneous Wearable Data in Healthcare.

    Science.gov (United States)

    Mezghani, Emna; Exposito, Ernesto; Drira, Khalil; Da Silveira, Marcos; Pruski, Cédric

    2015-12-01

    Advances supported by emerging wearable technologies in healthcare promise patients a provision of high quality of care. Wearable computing systems represent one of the most thrust areas used to transform traditional healthcare systems into active systems able to continuously monitor and control the patients' health in order to manage their care at an early stage. However, their proliferation creates challenges related to data management and integration. The diversity and variety of wearable data related to healthcare, their huge volume and their distribution make data processing and analytics more difficult. In this paper, we propose a generic semantic big data architecture based on the "Knowledge as a Service" approach to cope with heterogeneity and scalability challenges. Our main contribution focuses on enriching the NIST Big Data model with semantics in order to smartly understand the collected data, and generate more accurate and valuable information by correlating scattered medical data stemming from multiple wearable devices or/and from other distributed data sources. We have implemented and evaluated a Wearable KaaS platform to smartly manage heterogeneous data coming from wearable devices in order to assist the physicians in supervising the patient health evolution and keep the patient up-to-date about his/her status.

  6. Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

    Science.gov (United States)

    Li, Po-E; Lo, Chien-Chi; Anderson, Joseph J.; Davenport, Karen W.; Bishop-Lilly, Kimberly A.; Xu, Yan; Ahmed, Sanaa; Feng, Shihai; Mokashi, Vishwesh P.; Chain, Patrick S.G.

    2017-01-01

    Continued advancements in sequencing technologies have fueled the development of new sequencing applications and promise to flood current databases with raw data. A number of factors prevent the seamless and easy use of these data, including the breadth of project goals, the wide array of tools that individually perform fractions of any given analysis, the large number of associated software/hardware dependencies, and the detailed expertise required to perform these analyses. To address these issues, we have developed an intuitive web-based environment with a wide assortment of integrated and cutting-edge bioinformatics tools in pre-configured workflows. These workflows, coupled with the ease of use of the environment, provide even novice next-generation sequencing users with the ability to perform many complex analyses with only a few mouse clicks and, within the context of the same environment, to visualize and further interrogate their results. This bioinformatics platform is an initial attempt at Empowering the Development of Genomics Expertise (EDGE) in a wide range of applications for microbial research. PMID:27899609

  7. An integrated telemedicine platform for the assessment of affective physiological states

    Directory of Open Access Journals (Sweden)

    Ganiatsas George

    2006-08-01

    Full Text Available Abstract AUBADE is an integrated platform built for the affective assessment of individuals. The system performs evaluation of the emotional state by classifying vectors of features extracted from: facial Electromyogram, Respiration, Electrodermal Activity and Electrocardiogram. The AUBADE system consists of: (a a multisensorial wearable, (b a data acquisition and wireless communication module, (c a feature extraction module, (d a 3D facial animation module which is used for the projection of the obtained data through a generic 3D face model; whereas the end-user will be able to view the facial expression of the subject in real time, (e an intelligent emotion recognition module, and (f the AUBADE databases where the acquired signals along with the subject's animation videos are saved. The system is designed to be applied to human subjects operating under extreme stress conditions, in particular car racing drivers, and also to patients suffering from neurological and psychological disorders. AUBADE's classification accuracy into five predefined emotional classes (high stress, low stress, disappointment, euphoria and neutral face is 86.0%. The pilot system applications and components are being tested and evaluated on Maserati's car. racing drivers.

  8. Design of monolithically integrated GeSi electro-absorption modulators and photodetectors on a SOI platform

    Science.gov (United States)

    Liu, Jifeng; Pan, Dong; Jongthammanurak, Samerkhae; Wada, Kazumi; Kimerling, Lionel C.; Michel, Jurgen

    2007-01-01

    We present a design of monolithically integrated GeSi electroabsorption modulators and photodetectors for electronic-photonic integrated circuits on a silicon-on-insulator (SOI) platform. The GeSi electroabsorption modulator is based on the Franz-Keldysh effect, and the GeSi composition is chosen for optimal performance around 1550 nm. The designed modulator device is butt-coupled to Si(core)/SiO2(cladding) high index contrast waveguides, and has a predicted 3 dB bandwidth of >50 GHz and an extinction ratio of 10 dB. The same device structure can also be used for a waveguide-coupled photodetector with a predicted responsivity of > 1 A/W and a 3 dB bandwidth of > 35 GHz. Use of the same GeSi composition and device structure allows efficient monolithic process integration of the modulators and the photodetectors on an SOI platform.

  9. Integration of HIV in child survival platforms: a novel programmatic pathway towards the 90–90–90 targets

    Directory of Open Access Journals (Sweden)

    Dick D Chamla

    2015-12-01

    Full Text Available Introduction: Integration of HIV into child survival platforms is an evolving territory with multiple connotations. Most literature on integration of HIV into other health services focuses on adults; however promising practices for children are emerging. These include the Double Dividend (DD framework, a new programming approach with dual goal of improving paediatric HIV care and child survival. In this commentary, the authors discuss why integrating HIV testing, treatment and care into child survival platforms is important, as well as its potential to advance progress towards global targets that call for, by 2020, 90% of children living with HIV to know their status, 90% of those diagnosed to be on treatment and 90% of those on treatment to be virally suppressed (90–90–90. Discussion: Integration is critical in improving health outcomes and efficiency gains. In children, integration of HIV in programmes such as immunization and nutrition has been associated with an increased uptake of HIV infant testing. Integration is increasingly recognized as a case-finding strategy for children missed from prevention of mother-to-child transmission programmes and as a platform for diffusing emerging technologies such as point-of-care diagnostics. These support progress towards the 90–90–90 targets by providing a pathway for early identification of HIV-infected children with co-morbidities, prompt initiation of treatment and improved survival. There are various promising practices that have demonstrated HIV outcomes; however, few have documented the benefits of integration on child survival interventions. The DD framework is well positioned to address the bidirectional impacts for both programmes. Conclusions: Integration provides an important programmatic pathway for accelerated progress towards the 90–90–90 targets. Despite this encouraging information, there are still challenges to be addressed in order to maximize the benefits of integration.

  10. The tsunami service bus, an integration platform for heterogeneous sensor systems

    Science.gov (United States)

    Haener, R.; Waechter, J.; Kriegel, U.; Fleischer, J.; Mueller, S.

    2009-04-01

    components remain unchanged, components can be maintained and evolved independently on each other and service functionality as a whole can be reused. In GITEWS the functional integration pattern was adopted by applying the principles of an Enterprise Service Bus (ESB) as a backbone. Four services provided by the so called Tsunami Service Bus (TSB) which are essential for early warning systems are realized compliant to services specified within the Sensor Web Enablement (SWE) initiative of the Open Geospatial Consortium (OGC). 3. ARCHITECTURE The integration platform was developed to access proprietary, heterogeneous sensor data and to provide them in a uniform manner for further use. Its core, the TSB provides both a messaging-backbone and -interfaces on the basis of a Java Messaging Service (JMS). The logical architecture of GITEWS consists of four independent layers: • A resource layer where physical or virtual sensors as well as data or model storages provide relevant measurement-, event- and analysis-data: Utilizable for the TSB are any kind of data. In addition to sensors databases, model data and processing applications are adopted. SWE specifies encoding both to access and to describe these data in a comprehensive way: 1. Sensor Model Language (SensorML): Standardized description of sensors and sensor data 2. Observations and Measurements (O&M): Model and encoding of sensor measurements • A service layer to collect and conduct data from heterogeneous and proprietary resources and provide them via standardized interfaces: The TSB enables interaction with sensors via the following services: 1. Sensor Observation Service (SOS): Standardized access to sensor data 2. Sensor Planning Service (SPS): Controlling of sensors and sensor networks 3. Sensor Alert Service (SAS): Active sending of data if defined events occur 4. Web Notification Service (WNS): Conduction of asynchronous dialogues between services • An orchestration layer where atomic services are composed and

  11. The VIPER project (Visualization Integration Platform for Exploration Research): a biologically inspired autonomous reconfigurable robotic platform for diverse unstructured environments

    Science.gov (United States)

    Schubert, Oliver J.; Tolle, Charles R.

    2004-09-01

    Over the last decade the world has seen numerous autonomous vehicle programs. Wheels and track designs are the basis for many of these vehicles. This is primarily due to four main reasons: a vast preexisting knowledge base for these designs, energy efficiency of power sources, scalability of actuators, and the lack of control systems technologies for handling alternate highly complex distributed systems. Though large efforts seek to improve the mobility of these vehicles, many limitations still exist for these systems within unstructured environments, e.g. limited mobility within industrial and nuclear accident sites where existing plant configurations have been extensively changed. These unstructured operational environments include missions for exploration, reconnaissance, and emergency recovery of objects within reconfigured or collapsed structures, e.g. bombed buildings. More importantly, these environments present a clear and present danger for direct human interactions during the initial phases of recovery operations. Clearly, the current classes of autonomous vehicles are incapable of performing in these environments. Thus the next generation of designs must include highly reconfigurable and flexible autonomous robotic platforms. This new breed of autonomous vehicles will be both highly flexible and environmentally adaptable. Presented in this paper is one of the most successful designs from nature, the snake-eel-worm (SEW). This design implements shape memory alloy (SMA) actuators which allow for scaling of the robotic SEW designs from sub-micron scale to heavy industrial implementations without major conceptual redesigns as required in traditional hydraulic, pneumatic, or motor driven systems. Autonomous vehicles based on the SEW design posses the ability to easily move between air based environments and fluid based environments with limited or no reconfiguration. Under a SEW designed vehicle, one not only achieves vastly improved maneuverability within a

  12. Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

    DEFF Research Database (Denmark)

    Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller;

    2014-01-01

    Whole genome sequencing (WGS) shows great potential for real-time monitoring and identification of infectious disease outbreaks. However, rapid and reliable comparison of data generated in multiple laboratories and using multiple technologies is essential. So far studies have focused on using one...... data sets and sequenced on three different platforms (Illumina, 454, Ion Torrent). We show that the methods are able to overcome the systematic biases caused by the sequencers and infer the expected phylogenies. It is concluded that the cause of the success of these new procedures is due...

  13. Delayed Consensus Problem for Single and Double Integrator Systems

    Directory of Open Access Journals (Sweden)

    Martín Velasco-Villa

    2015-01-01

    Full Text Available This work deals with the analysis of the consensus problem for networks of agents constituted by single and double integrator systems. It is assumed that the communication among agents is affected by a constant time-delay. Previous and numerous analysis of the problem shows that the maximum communication time-delay that can be introduced to the network without affecting the consensus of the group of the agents depends on the considered topology. In this work, a control scheme that is based on the estimation of future states of the agents and that allows increasing the magnitude of a possible time-delay affecting the communication channels is proposed. How the proposed delay compensation strategy is independent of the network topology in the sense that the maximum allowable time-delay that could be supported by the network depends on a design parameter and not on the maximum eigenvalue of the corresponding Laplacian matrix is shown. It is formally proven that, under the proposed prediction scheme, the consensus of the group can be achieved by improving the maximum time-delay bounds previously reported in the literature. Numerical simulations show the effectiveness of the proposed solution.

  14. A big data geospatial analytics platform - Physical Analytics Integrated Repository and Services (PAIRS)

    Science.gov (United States)

    Hamann, H.; Jimenez Marianno, F.; Klein, L.; Albrecht, C.; Freitag, M.; Hinds, N.; Lu, S.

    2015-12-01

    A big data geospatial analytics platform:Physical Analytics Information Repository and Services (PAIRS)Fernando Marianno, Levente Klein, Siyuan Lu, Conrad Albrecht, Marcus Freitag, Nigel Hinds, Hendrik HamannIBM TJ Watson Research Center, Yorktown Heights, NY 10598A major challenge in leveraging big geospatial data sets is the ability to quickly integrate multiple data sources into physical and statistical models and be run these models in real time. A geospatial data platform called Physical Analytics Information and Services (PAIRS) is developed on top of open source hardware and software stack to manage Terabyte of data. A new data interpolation and re gridding is implemented where any geospatial data layers can be associated with a set of global grid where the grid resolutions is doubling for consecutive layers. Each pixel on the PAIRS grid have an index that is a combination of locations and time stamp. The indexing allow quick access to data sets that are part of a global data layers and allowing to retrieve only the data of interest. PAIRS takes advantages of parallel processing framework (Hadoop) in a cloud environment to digest, curate, and analyze the data sets while being very robust and stable. The data is stored on a distributed no-SQL database (Hbase) across multiple server, data upload and retrieval is parallelized where the original analytics task is broken up is smaller areas/volume, analyzed independently, and then reassembled for the original geographical area. The differentiating aspect of PAIRS is the ability to accelerate model development across large geographical regions and spatial resolution ranging from 0.1 m up to hundreds of kilometer. System performance is benchmarked on real time automated data ingestion and retrieval of Modis and Landsat data layers. The data layers are curated for sensor error, verified for correctness, and analyzed statistically to detect local anomalies. Multi-layer query enable PAIRS to filter different data

  15. Leveraging socially networked mobile ICT platforms for the last-mile delivery problem.

    Science.gov (United States)

    Suh, Kyo; Smith, Timothy; Linhoff, Michelle

    2012-09-01

    Increasing numbers of people are managing their social networks on mobile information and communication technology (ICT) platforms. This study materializes these social relationships by leveraging spatial and networked information for sharing excess capacity to reduce the environmental impacts associated with "last-mile" package delivery systems from online purchases, particularly in low population density settings. Alternative package pickup location systems (PLS), such as a kiosk on a public transit platform or in a grocery store, have been suggested as effective strategies for reducing package travel miles and greenhouse gas emissions, compared to current door-to-door delivery models (CDS). However, our results suggest that a pickup location delivery system operating in a suburban setting may actually increase travel miles and emissions. Only once a social network is employed to assist in package pickup (SPLS) are significant reductions in the last-mile delivery distance and carbon emissions observed across both urban and suburban settings. Implications for logistics management's decades-long focus on improving efficiencies of dedicated distribution systems through specialization, as well as for public policy targeting carbon emissions of the transport sector are discussed.

  16. Can the Integration of a PLE in an E-Portfolio Platform Improve Generic Competences?

    Science.gov (United States)

    Galván-Fernández, Cristina; Rubio-Hurtado, María José; Martínez-Olmo, Francesc; Rodríguez-Illera, José Luis

    2017-01-01

    The study analyzes the improvement in generic competences through e-portfolio/PLE platform and didactic planning. The new version of the platform, Digital Folder, contains utilities for students and teachers and some PLE components that help the learning process through e-portfolios. Didactic planning is compared for students from the University…

  17. Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping.

    Science.gov (United States)

    Klukas, Christian; Chen, Dijun; Pape, Jean-Michel

    2014-06-01

    High-throughput phenotyping is emerging as an important technology to dissect phenotypic components in plants. Efficient image processing and feature extraction are prerequisites to quantify plant growth and performance based on phenotypic traits. Issues include data management, image analysis, and result visualization of large-scale phenotypic data sets. Here, we present Integrated Analysis Platform (IAP), an open-source framework for high-throughput plant phenotyping. IAP provides user-friendly interfaces, and its core functions are highly adaptable. Our system supports image data transfer from different acquisition environments and large-scale image analysis for different plant species based on real-time imaging data obtained from different spectra. Due to the huge amount of data to manage, we utilized a common data structure for efficient storage and organization of data for both input data and result data. We implemented a block-based method for automated image processing to extract a representative list of plant phenotypic traits. We also provide tools for build-in data plotting and result export. For validation of IAP, we performed an example experiment that contains 33 maize (Zea mays 'Fernandez') plants, which were grown for 9 weeks in an automated greenhouse with nondestructive imaging. Subsequently, the image data were subjected to automated analysis with the maize pipeline implemented in our system. We found that the computed digital volume and number of leaves correlate with our manually measured data in high accuracy up to 0.98 and 0.95, respectively. In summary, IAP provides a multiple set of functionalities for import/export, management, and automated analysis of high-throughput plant phenotyping data, and its analysis results are highly reliable.

  18. Pragmatic Metadata Management for Integration into Multiple Spatial Data Infrastructure Systems and Platforms

    Science.gov (United States)

    Benedict, K. K.; Scott, S.

    2013-12-01

    While there has been a convergence towards a limited number of standards for representing knowledge (metadata) about geospatial (and other) data objects and collections, there exist a variety of community conventions around the specific use of those standards and within specific data discovery and access systems. This combination of limited (but multiple) standards and conventions creates a challenge for system developers that aspire to participate in multiple data infrastrucutres, each of which may use a different combination of standards and conventions. While Extensible Markup Language (XML) is a shared standard for encoding most metadata, traditional direct XML transformations (XSLT) from one standard to another often result in an imperfect transfer of information due to incomplete mapping from one standard's content model to another. This paper presents the work at the University of New Mexico's Earth Data Analysis Center (EDAC) in which a unified data and metadata management system has been developed in support of the storage, discovery and access of heterogeneous data products. This system, the Geographic Storage, Transformation and Retrieval Engine (GSTORE) platform has adopted a polyglot database model in which a combination of relational and document-based databases are used to store both data and metadata, with some metadata stored in a custom XML schema designed as a superset of the requirements for multiple target metadata standards: ISO 19115-2/19139/19110/19119, FGCD CSDGM (both with and without remote sensing extensions) and Dublin Core. Metadata stored within this schema is complemented by additional service, format and publisher information that is dynamically "injected" into produced metadata documents when they are requested from the system. While mapping from the underlying common metadata schema is relatively straightforward, the generation of valid metadata within each target standard is necessary but not sufficient for integration into

  19. Power generation on a solar photovoltaic modules integrated Lighter-than-Air Platform at a low altitude

    CERN Document Server

    Ghosh, Kuntal; Duttagupta, Siddharth P

    2016-01-01

    Use of lighter than air platforms (aerostats and airships) for reconnaissance and surveillance over long periods can be facilitated by generation of power on-board through solar photovoltaic arrays. Attempts to integrate solar photovoltaic modules on such contoured surfaces leads to multiple challenges ranging from the choice of solar modules, determination of best method of their integration with the lighter than air platform, and design of the array layout in order to optimize the loss of power due to non-uniform illumination. This paper describes the method of designing such a system and suggests strategies for overcoming these challenges. The issue of non-uniform illumination has been tackled by maximum power point tracking using the scanning window technique for maximizing power generation and an algorithm of distributed maximum power point tracking has been suggested for further improvement. The procedure described in this paper can be used for obtaining the optimum power generation capability of a sola...

  20. Towards a Standard-based Domain-specific Platform to Solve Machine Learning-based Problems

    Directory of Open Access Journals (Sweden)

    Vicente García-Díaz

    2015-12-01

    Full Text Available Machine learning is one of the most important subfields of computer science and can be used to solve a variety of interesting artificial intelligence problems. There are different languages, framework and tools to define the data needed to solve machine learning-based problems. However, there is a great number of very diverse alternatives which makes it difficult the intercommunication, portability and re-usability of the definitions, designs or algorithms that any developer may create. In this paper, we take the first step towards a language and a development environment independent of the underlying technologies, allowing developers to design solutions to solve machine learning-based problems in a simple and fast way, automatically generating code for other technologies. That can be considered a transparent bridge among current technologies. We rely on Model-Driven Engineering approach, focusing on the creation of models to abstract the definition of artifacts from the underlying technologies.

  1. VOLTTRON™: An Agent Platform for Integrating Electric Vehicles and Smart Grid

    Energy Technology Data Exchange (ETDEWEB)

    Haack, Jereme N.; Akyol, Bora A.; Tenney, Nathan D.; Carpenter, Brandon J.; Pratt, Richard M.; Carroll, Thomas E.

    2013-12-06

    The VOLTTRON™ platform provides a secure environment for the deployment of intelligent applications in the smart grid. VOLTTRON design is based on the needs of control applications running on small form factor devices, namely security and resource guarantees. Services such as resource discovery, secure agent mobility, and interacting with smart and legacy devices are provided by the platform to ease the development of control applications and accelerate their deployment. VOLTTRON platform has been demonstrated in several different domains that influenced and enhanced its capabilities. This paper will discuss the features of VOLTTRON and highlight its usage to coordinate electric vehicle charging with home energy usage

  2. Translational research platforms integrating clinical and omics data: a review of publicly available solutions

    OpenAIRE

    2014-01-01

    The rise of personalized medicine and the availability of high-throughput molecular analyses in the context of clinical care have increased the need for adequate tools for translational researchers to manage and explore these data. We reviewed the biomedical literature for translational platforms allowing the management and exploration of clinical and omics data, and identified seven platforms: BRISK, caTRIP, cBio Cancer Portal, G-DOC, iCOD, iDASH and tranSMART. We analyzed these platforms al...

  3. End-to-end integrated security and performance analysis on the DEGAS Choreographer platform

    DEFF Research Database (Denmark)

    Buchholtz, Mikael; Gilmore, Stephen; Haenel, Valentin

    2005-01-01

    We present a software tool platform which facilitates security and performance analysis of systems which starts and ends with UML model descriptions. A UML project is presented to the platform for analysis, formal content is extracted in the form of process calculi descriptions, analysed...... with the analysers of the calculi, and the results of the analysis are reflected back into a modified version of the input UML model. The design platform supporting the methodology, Choreographer, interoperates with state-of-the-art UML modelling tools. We illustrate the approach with a well known protocol...

  4. Automated microfluidic platform of bead-based electrochemical immunosensor integrated with bioreactor for continual monitoring of cell secreted biomarkers.

    Science.gov (United States)

    Riahi, Reza; Shaegh, Seyed Ali Mousavi; Ghaderi, Masoumeh; Zhang, Yu Shrike; Shin, Su Ryon; Aleman, Julio; Massa, Solange; Kim, Duckjin; Dokmeci, Mehmet Remzi; Khademhosseini, Ali

    2016-04-21

    There is an increasing interest in developing microfluidic bioreactors and organs-on-a-chip platforms combined with sensing capabilities for continual monitoring of cell-secreted biomarkers. Conventional approaches such as ELISA and mass spectroscopy cannot satisfy the needs of continual monitoring as they are labor-intensive and not easily integrable with low-volume bioreactors. This paper reports on the development of an automated microfluidic bead-based electrochemical immunosensor for in-line measurement of cell-secreted biomarkers. For the operation of the multi-use immunosensor, disposable magnetic microbeads were used to immobilize biomarker-recognition molecules. Microvalves were further integrated in the microfluidic immunosensor chip to achieve programmable operations of the immunoassay including bead loading and unloading, binding, washing, and electrochemical sensing. The platform allowed convenient integration of the immunosensor with liver-on-chips to carry out continual quantification of biomarkers secreted from hepatocytes. Transferrin and albumin productions were monitored during a 5-day hepatotoxicity assessment in which human primary hepatocytes cultured in the bioreactor were treated with acetaminophen. Taken together, our unique microfluidic immunosensor provides a new platform for in-line detection of biomarkers in low volumes and long-term in vitro assessments of cellular functions in microfluidic bioreactors and organs-on-chips.

  5. Multisensor-integrated organs-on-chips platform for automated and continual in situ monitoring of organoid behaviors.

    Science.gov (United States)

    Zhang, Yu Shrike; Aleman, Julio; Shin, Su Ryon; Kilic, Tugba; Kim, Duckjin; Mousavi Shaegh, Seyed Ali; Massa, Solange; Riahi, Reza; Chae, Sukyoung; Hu, Ning; Avci, Huseyin; Zhang, Weijia; Silvestri, Antonia; Sanati Nezhad, Amir; Manbohi, Ahmad; De Ferrari, Fabio; Polini, Alessandro; Calzone, Giovanni; Shaikh, Noor; Alerasool, Parissa; Budina, Erica; Kang, Jian; Bhise, Nupura; Ribas, João; Pourmand, Adel; Skardal, Aleksander; Shupe, Thomas; Bishop, Colin E; Dokmeci, Mehmet Remzi; Atala, Anthony; Khademhosseini, Ali

    2017-03-21

    Organ-on-a-chip systems are miniaturized microfluidic 3D human tissue and organ models designed to recapitulate the important biological and physiological parameters of their in vivo counterparts. They have recently emerged as a viable platform for personalized medicine and drug screening. These in vitro models, featuring biomimetic compositions, architectures, and functions, are expected to replace the conventional planar, static cell cultures and bridge the gap between the currently used preclinical animal models and the human body. Multiple organoid models may be further connected together through the microfluidics in a similar manner in which they are arranged in vivo, providing the capability to analyze multiorgan interactions. Although a wide variety of human organ-on-a-chip models have been created, there are limited efforts on the integration of multisensor systems. However, in situ continual measuring is critical in precise assessment of the microenvironment parameters and the dynamic responses of the organs to pharmaceutical compounds over extended periods of time. In addition, automated and noninvasive capability is strongly desired for long-term monitoring. Here, we report a fully integrated modular physical, biochemical, and optical sensing platform through a fluidics-routing breadboard, which operates organ-on-a-chip units in a continual, dynamic, and automated manner. We believe that this platform technology has paved a potential avenue to promote the performance of current organ-on-a-chip models in drug screening by integrating a multitude of real-time sensors to achieve automated in situ monitoring of biophysical and biochemical parameters.

  6. Automated microfluidic platform of bead-based electrochemical immunosensor integrated with bioreactor for continual monitoring of cell secreted biomarkers

    Science.gov (United States)

    Riahi, Reza; Shaegh, Seyed Ali Mousavi; Ghaderi, Masoumeh; Zhang, Yu Shrike; Shin, Su Ryon; Aleman, Julio; Massa, Solange; Kim, Duckjin; Dokmeci, Mehmet Remzi; Khademhosseini, Ali

    2016-04-01

    There is an increasing interest in developing microfluidic bioreactors and organs-on-a-chip platforms combined with sensing capabilities for continual monitoring of cell-secreted biomarkers. Conventional approaches such as ELISA and mass spectroscopy cannot satisfy the needs of continual monitoring as they are labor-intensive and not easily integrable with low-volume bioreactors. This paper reports on the development of an automated microfluidic bead-based electrochemical immunosensor for in-line measurement of cell-secreted biomarkers. For the operation of the multi-use immunosensor, disposable magnetic microbeads were used to immobilize biomarker-recognition molecules. Microvalves were further integrated in the microfluidic immunosensor chip to achieve programmable operations of the immunoassay including bead loading and unloading, binding, washing, and electrochemical sensing. The platform allowed convenient integration of the immunosensor with liver-on-chips to carry out continual quantification of biomarkers secreted from hepatocytes. Transferrin and albumin productions were monitored during a 5-day hepatotoxicity assessment in which human primary hepatocytes cultured in the bioreactor were treated with acetaminophen. Taken together, our unique microfluidic immunosensor provides a new platform for in-line detection of biomarkers in low volumes and long-term in vitro assessments of cellular functions in microfluidic bioreactors and organs-on-chips.

  7. Integration of a network aware traffic generation device into a computer network emulation platform

    CSIR Research Space (South Africa)

    Von Solms, S

    2014-07-01

    Full Text Available aware traffic into the network emulation platform. Traffic generators are often systems that replay captured traffic packet-by-packet or generate traffic according to a specified model or preconfigured sequence. Many of these traffic generators can...

  8. A central continuous integration platform: Agile Infrastructure use case and future plans

    CERN Document Server

    CERN. Geneva; ANDERSEN, Terje; GEORGIOU, Stefanos

    2014-01-01

    We shall describe the use of Jenkins as a CI solution by the Configuration Team and present the requirements and plans for a central CI platform, as well as the associated challenges and possible solutions.

  9. Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform.

    Science.gov (United States)

    Moutsatsos, Ioannis K; Hossain, Imtiaz; Agarinis, Claudia; Harbinski, Fred; Abraham, Yann; Dobler, Luc; Zhang, Xian; Wilson, Christopher J; Jenkins, Jeremy L; Holway, Nicholas; Tallarico, John; Parker, Christian N

    2017-03-01

    High-throughput screening generates large volumes of heterogeneous data that require a diverse set of computational tools for management, processing, and analysis. Building integrated, scalable, and robust computational workflows for such applications is challenging but highly valuable. Scientific data integration and pipelining facilitate standardized data processing, collaboration, and reuse of best practices. We describe how Jenkins-CI, an "off-the-shelf," open-source, continuous integration system, is used to build pipelines for processing images and associated data from high-content screening (HCS). Jenkins-CI provides numerous plugins for standard compute tasks, and its design allows the quick integration of external scientific applications. Using Jenkins-CI, we integrated CellProfiler, an open-source image-processing platform, with various HCS utilities and a high-performance Linux cluster. The platform is web-accessible, facilitates access and sharing of high-performance compute resources, and automates previously cumbersome data and image-processing tasks. Imaging pipelines developed using the desktop CellProfiler client can be managed and shared through a centralized Jenkins-CI repository. Pipelines and managed data are annotated to facilitate collaboration and reuse. Limitations with Jenkins-CI (primarily around the user interface) were addressed through the selection of helper plugins from the Jenkins-CI community.

  10. Development and application of knowledge-based subject group integration platforms:A case study of Shanghai Institute of Ceramics,CAS

    Institute of Scientific and Technical Information of China (English)

    Yu; LIU; Jian; FU; Huijun; ZHENG; Hao; CHEN; Zhiping; YANG

    2014-01-01

    Purpose:According to the different requirements of research group users,we established the knowledge-based subject group integration platforms of Shanghai Institute of Ceramics,the Chinese Academy of Sciences(abbreviated as SIC CAS hereinafter),which were designed and constructed to better meet the needs of CAS research groups for their development,collaboration and communication.Design/methodology/approach:We first identified the requirements of users via preliminary investigation,and then chose CASI1 P,iLibrary and XKE technology,respectively as the building tools compatible with the major demands of users.These steps helped us complete the layout design of SIC CAS integration platforms,as well as its knowledge organization and integration.Findings:According to the need of users,we applied three types of platform construction technologies to five SIC integration platforms,and formulated standard norms for the further construction process,which could provide useful reference for a sustainable development for the extensive construction in CAS institutes.Research limitations:In order to make the SIC integration platforms more intelligent and have more functions,we need to enlarge the scale of the Platforms and upgrade the building tools for the platform construction.Practical implications:The nature of SIC sub-project integration platforms is to construct a content-sensitive environment which can embed knowledge services and knowledge applications seamlessly into scientific activities,so the Platform is expected to be a useful tool to help researchers better understand the recent development of the research field and form collaborations with their peers.Originality/value:SIC integration platforms are the only pilot construction that used 3different platform technologies in the first batch of knowledge-based subject group integration platforms of the Chinese Academy of Sciences.The construction is user-centered throughout the whole process,namely,from the technology

  11. Employing finite-state machines in data integrity problems

    Directory of Open Access Journals (Sweden)

    Malikov Andrey

    2016-01-01

    Full Text Available This paper explores the issue of group integrity of tuple subsets regarding corporate integrity constraints in relational databases. A solution may be found by applying the finite-state machine theory to guarantee group integrity of data. We present a practical guide to coding such an automaton. After creating SQL queries to manipulate data and control its integrity for real data domains, we study the issue of query performance, determine the level of transaction isolation, and generate query plans.

  12. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data.

    Science.gov (United States)

    Pasculescu, Adrian; Schoof, Erwin M; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D; Pawson, Tony; Linding, Rune; Colwill, Karen

    2014-04-04

    A major challenge in mass spectrometry and other large-scale applications is how to handle, integrate, and model the data that is produced. Given the speed at which technology advances and the need to keep pace with biological experiments, we designed a computational platform, CoreFlow, which provides programmers with a framework to manage data in real-time. It allows users to upload data into a relational database (MySQL), and to create custom scripts in high-level languages such as R, Python, or Perl for processing, correcting and modeling this data. CoreFlow organizes these scripts into project-specific pipelines, tracks interdependencies between related tasks, and enables the generation of summary reports as well as publication-quality images. As a result, the gap between experimental and computational components of a typical large-scale biology project is reduced, decreasing the time between data generation, analysis and manuscript writing. CoreFlow is being released to the scientific community as an open-sourced software package complete with proteomics-specific examples, which include corrections for incomplete isotopic labeling of peptides (SILAC) or arginine-to-proline conversion, and modeling of multiple/selected reaction monitoring (MRM/SRM) results. CoreFlow was purposely designed as an environment for programmers to rapidly perform data analysis. These analyses are assembled into project-specific workflows that are readily shared with biologists to guide the next stages of experimentation. Its simple yet powerful interface provides a structure where scripts can be written and tested virtually simultaneously to shorten the life cycle of code development for a particular task. The scripts are exposed at every step so that a user can quickly see the relationships between the data, the assumptions that have been made, and the manipulations that have been performed. Since the scripts use commonly available programming languages, they can easily be

  13. SolveDB: Integrating Optimization Problem Solvers Into SQL Databases

    DEFF Research Database (Denmark)

    Siksnys, Laurynas; Pedersen, Torben Bach

    2016-01-01

    Many real-world decision problems involve solving optimization problems based on data in an SQL database. Traditionally, solving such problems requires combining a DBMS with optimization software packages for each required class of problems (e.g. linear and constraint programming) -- leading...... to workflows that are cumbersome, complex, inefficient, and error-prone. In this paper, we present SolveDB - a DBMS for optimization applications. SolveDB supports solvers for different problem classes and offers seamless data management and optimization problem solving in a pure SQL-based setting. This allows...... for much simpler and more effective solutions of database-based optimization problems. SolveDB is based on the 3-level ANSI/SPARC architecture and allows formulating, solving, and analysing solutions of optimization problems using a single so-called solve query. SolveDB provides (1) an SQL-based syntax...

  14. An Integrative Platform of TCM Network Pharmacology and Its Application on a Herbal Formula, Qing-Luo-Yin

    Directory of Open Access Journals (Sweden)

    Bo Zhang

    2013-01-01

    Full Text Available The scientific understanding of traditional Chinese medicine (TCM has been hindered by the lack of methods that can explore the complex nature and combinatorial rules of herbal formulae. On the assumption that herbal ingredients mainly target a molecular network to adjust the imbalance of human body, here we present a-self-developed TCM network pharmacology platform for discovering herbal formulae in a systematic manner. This platform integrates a set of network-based methods that we established previously to catch the network regulation mechanism and to identify active ingredients as well as synergistic combinations for a given herbal formula. We then provided a case study on an antirheumatoid arthritis (RA formula, Qing-Luo-Yin (QLY, to demonstrate the usability of the platform. We revealed the target network of QLY against RA-related key processes including angiogenesis, inflammatory response, and immune response, based on which we not only predicted active and synergistic ingredients from QLY but also interpreted the combinatorial rule of this formula. These findings are either verified by the literature evidence or have the potential to guide further experiments. Therefore, such a network pharmacology strategy and platform is expected to make the systematical study of herbal formulae achievable and to make the TCM drug discovery predictable.

  15. Some open problems in random matrix theory and the theory of integrable systems

    OpenAIRE

    Deift, Percy

    2007-01-01

    We describe a list of open problems in random matrix theory and integrable systems which was presented at the conference ``Integrable Systems, Random Matrices, and Applications'' at the Courant Institute in May 2006.

  16. Some open problems in random matrix theory and the theory of integrable systems

    OpenAIRE

    Deift, Percy

    2007-01-01

    We describe a list of open problems in random matrix theory and integrable systems which was presented at the conference ``Integrable Systems, Random Matrices, and Applications'' at the Courant Institute in May 2006.

  17. Second-Order Accurate Projective Integrators for Multiscale Problems

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S L; Gear, C W

    2005-05-27

    We introduce new projective versions of second-order accurate Runge-Kutta and Adams-Bashforth methods, and demonstrate their use as outer integrators in solving stiff differential systems. An important outcome is that the new outer integrators, when combined with an inner telescopic projective integrator, can result in fully explicit methods with adaptive outer step size selection and solution accuracy comparable to those obtained by implicit integrators. If the stiff differential equations are not directly available, our formulations and stability analysis are general enough to allow the combined outer-inner projective integrators to be applied to black-box legacy codes or perform a coarse-grained time integration of microscopic systems to evolve macroscopic behavior, for example.

  18. Integrated solid-state nanopore platform for nanopore fabrication via dielectric breakdown, DNA-speed deceleration and noise reduction

    Science.gov (United States)

    Goto, Yusuke; Yanagi, Itaru; Matsui, Kazuma; Yokoi, Takahide; Takeda, Ken-Ichi

    2016-08-01

    The practical use of solid-state nanopores for DNA sequencing requires easy fabrication of the nanopores, reduction of the DNA movement speed and reduction of the ionic current noise. Here, we report an integrated nanopore platform with a nanobead structure that decelerates DNA movement and an insulating polyimide layer that reduces noise. To enable rapid nanopore fabrication, we introduced a controlled dielectric breakdown (CDB) process into our system. DNA translocation experiments revealed that single nanopores were created by the CDB process without sacrificing performance in reducing DNA movement speed by up to 10 μs/base or reducing noise up to 600 pArms at 1 MHz. Our platform provides the essential components for proceeding to the next step in the process of DNA sequencing.

  19. Catalyst-Free Vapor-Phase Method for Direct Integration of Gas Sensing Nanostructures with Polymeric Transducing Platforms

    Directory of Open Access Journals (Sweden)

    Stella Vallejos

    2014-01-01

    Full Text Available Tungsten oxide nanoneedles (NNs are grown and integrated directly with polymeric transducing platforms for gas sensors via aerosol-assisted chemical vapor deposition (AACVD method. Material analysis shows the feasibility to grow highly crystalline nanomaterials in the form of NNs with aspect ratios between 80 and 200 and with high concentration of oxygen vacancies at the surface, whereas gas testing demonstrates moderate sensing responses to hydrogen at concentrations between 10 ppm and 50 ppm, which are comparable with results for tungsten oxide NNs grown on silicon transducing platforms. This method is demonstrated to be an attractive route to fabricate next generation of gas sensors devices, provided with flexibility and functionality, with great potential in a cost effective production for large-scale applications.

  20. Integrating Ultrasound Teaching into Preclinical Problem-based Learning

    Directory of Open Access Journals (Sweden)

    Eli Tumba Tshibwabwa

    2016-01-01

    Full Text Available Objectives: The aim is to provide students in the preclinical with ultrasound image interpretation skills. Research question: Are students in smaller groups with access to a combination of lectures and hands-on patient contact most likely to have better ultrasound image interpretation skills, than students in larger groups with only interactive didactic lectures? Methodology: First-year students at the preclinical Program of the College of Medicine, participated in two 2-h introductory interactive ultrasound sessions. The study comprised two cohorts: 2012/2013 students, who were offered large group teaching (LGT sessions (control group, and 2013/2014 students, who received the intervention in small group learning problem-based learning (PBL sessions (experimental group. The overall learning objectives were identical for both groups. The success of the module was evaluated using pre- and post-tests as well as students′ feedback. Results: The students in the experimental group showed significantly higher scores in interpretations of images than those in the control group. The experimental group showed achievement of learning outcomes along with higher levels of satisfaction with the module compared to the latter. Conclusion: Posttest knowledge of the basics of ultrasound improved significantly over the pretest in the experimental group. In addition, students′ overall satisfaction of the ultrasound module was shown to be higher for the PBL compared to the LGT groups. Small groups in an interactive and PBL setting along with opportunities for hands-on practice and simultaneous visualization of findings on a high definition screen should enhance preclinical student learning of the basics of ultrasound. Despite the potential of ultrasound as a clinical, teaching and learning tool for students in the preclinical years, standardized recommendations have yet to be created regarding its integration into the curricula within academic institutions and

  1. Integrating Ultrasound Teaching into Preclinical Problem-based Learning

    Science.gov (United States)

    Tshibwabwa, Eli Tumba; Cannon, Jenifer; Rice, James; Kawooya, Michael G; Sanii, Reza; Mallin, Robert

    2016-01-01

    Objectives: The aim is to provide students in the preclinical with ultrasound image interpretation skills. Research question: Are students in smaller groups with access to a combination of lectures and hands-on patient contact most likely to have better ultrasound image interpretation skills, than students in larger groups with only interactive didactic lectures? Methodology: First-year students at the preclinical Program of the College of Medicine, participated in two 2-h introductory interactive ultrasound sessions. The study comprised two cohorts: 2012/2013 students, who were offered large group teaching (LGT) sessions (control group), and 2013/2014 students, who received the intervention in small group learning problem-based learning (PBL) sessions (experimental group). The overall learning objectives were identical for both groups. The success of the module was evaluated using pre- and post-tests as well as students’ feedback. Results: The students in the experimental group showed significantly higher scores in interpretations of images than those in the control group. The experimental group showed achievement of learning outcomes along with higher levels of satisfaction with the module compared to the latter. Conclusion: Posttest knowledge of the basics of ultrasound improved significantly over the pretest in the experimental group. In addition, students’ overall satisfaction of the ultrasound module was shown to be higher for the PBL compared to the LGT groups. Small groups in an interactive and PBL setting along with opportunities for hands-on practice and simultaneous visualization of findings on a high definition screen should enhance preclinical student learning of the basics of ultrasound. Despite the potential of ultrasound as a clinical, teaching and learning tool for students in the preclinical years, standardized recommendations have yet to be created regarding its integration into the curricula within academic institutions and clinical medicine

  2. Beyond xMOOCs in healthcare education: study of the feasibility in integrating virtual patient systems and MOOC platforms

    Directory of Open Access Journals (Sweden)

    Natalia Stathakarou

    2014-11-01

    Full Text Available Background. Massive Open Online Courses (MOOCs are an emerging trend in online learning. However, their technology is not yet completely adjusted to the needs of healthcare education. Integration of Virtual Patients within MOOCs to increase interactivity and foster clinical reasoning skills training, has been discussed in the past, but not verified by a practical implementation.Objective. To investigate the technical feasibility of integrating MOOCs with Virtual Patients for the purpose of enabling further research into the potential pedagogical benefits of this approach.Methods. We selected OpenEdx and Open Labyrinth as representative constituents of a MOOC platform and Virtual Patient system integration. Based upon our prior experience we selected the most fundamental technical requirement to address. Grounded in the available literature we identified an e-learning standard to guide the integration. We attempted to demonstrate the feasibility of the integration by designing a “proof-of-concept” prototype. The resulting pilot implementation was subject of verification by two test cases.Results. A Single Sign-On mechanism connecting Open Labyrinth with OpenEdx and based on the IMS LTI standard was successfully implemented and verified.Conclusion. We investigated the technical perspective of integrating Virtual Patients with MOOCs. By addressing this crucial technical requirement we set a base for future research on the educational benefits of using virtual patients in MOOCs. This provides new opportunities for integrating specialized software in healthcare education at massive scale.

  3. Beyond xMOOCs in healthcare education: study of the feasibility in integrating virtual patient systems and MOOC platforms.

    Science.gov (United States)

    Stathakarou, Natalia; Zary, Nabil; Kononowicz, Andrzej A

    2014-01-01

    Background. Massive Open Online Courses (MOOCs) are an emerging trend in online learning. However, their technology is not yet completely adjusted to the needs of healthcare education. Integration of Virtual Patients within MOOCs to increase interactivity and foster clinical reasoning skills training, has been discussed in the past, but not verified by a practical implementation. Objective. To investigate the technical feasibility of integrating MOOCs with Virtual Patients for the purpose of enabling further research into the potential pedagogical benefits of this approach. Methods. We selected OpenEdx and Open Labyrinth as representative constituents of a MOOC platform and Virtual Patient system integration. Based upon our prior experience we selected the most fundamental technical requirement to address. Grounded in the available literature we identified an e-learning standard to guide the integration. We attempted to demonstrate the feasibility of the integration by designing a "proof-of-concept" prototype. The resulting pilot implementation was subject of verification by two test cases. Results. A Single Sign-On mechanism connecting Open Labyrinth with OpenEdx and based on the IMS LTI standard was successfully implemented and verified. Conclusion. We investigated the technical perspective of integrating Virtual Patients with MOOCs. By addressing this crucial technical requirement we set a base for future research on the educational benefits of using virtual patients in MOOCs. This provides new opportunities for integrating specialized software in healthcare education at massive scale.

  4. IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models.

    Science.gov (United States)

    Ye, Chao; Xu, Nan; Dong, Chuan; Ye, Yuannong; Zou, Xuan; Chen, Xiulai; Guo, Fengbiao; Liu, Liming

    2017-04-07

    Genome-scale metabolic models (GSMMs) constitute a platform that combines genome sequences and detailed biochemical information to quantify microbial physiology at the system level. To improve the unity, integrity, correctness, and format of data in published GSMMs, a consensus IMGMD database was built in the LAMP (Linux + Apache + MySQL + PHP) system by integrating and standardizing 328 GSMMs constructed for 139 microorganisms. The IMGMD database can help microbial researchers download manually curated GSMMs, rapidly reconstruct standard GSMMs, design pathways, and identify metabolic targets for strategies on strain improvement. Moreover, the IMGMD database facilitates the integration of wet-lab and in silico data to gain an additional insight into microbial physiology. The IMGMD database is freely available, without any registration requirements, at http://imgmd.jiangnan.edu.cn/database.

  5. Interdisciplinary problem-solving: emerging modes in integrative systems biology

    NARCIS (Netherlands)

    MacLeod, Miles; Nersessian, Nancy J.

    2016-01-01

    Integrative systems biology is an emerging field that attempts to integrate computation, applied mathematics, engineering concepts and methods, and biological experimentation in order to model large-scale complex biochemical networks. The field is thus an important contemporary instance of an interd

  6. More Sustainable Participation? Multi-Stakeholder Platforms for Integrated Catchment Management

    NARCIS (Netherlands)

    Warner, J.F.

    2006-01-01

    This paper argues for realistic expectations of Multi-Stakeholder Platforms (MSPs). MSPs are currently a hot topic in the water policy community, despite voices of disillusionment with participation in development work. Research carried out in Peru, Argentina, India, South Africa and Belgium suggest

  7. Creation of an Integrated Environment to Supply e-Learning Platforms with Office Automation Features

    Science.gov (United States)

    Palumbo, Emilio; Verga, Francesca

    2015-01-01

    Over the last years great efforts have been made within the University environment to implement e-learning technologies in the standard educational practice. These learning technologies distribute online educational multimedia contents through technological platforms. Even though specific e-learning tools for technical disciplines were already…

  8. An Integrated Library Platform: Wales' Approach to Delivering Digital Information and Resources Nationally

    Science.gov (United States)

    Bevan, Paul; Tyler, Alyson

    2009-01-01

    Purpose: This paper aims to outline the developments and strategies employed to supply online library services in Wales through a national platform: library.wales.org These services include: the "Cat Cymru" cross-catalogue search, centrally procured subscription resources and local library microsites. Design/methodology/approach: The…

  9. Virtual microscopy system at Chinese medical university: an assisted teaching platform for promoting active learning and problem-solving skills.

    Science.gov (United States)

    Tian, Yanping; Xiao, Wengang; Li, Chengren; Liu, Yunlai; Qin, Maolin; Wu, Yi; Xiao, Lan; Li, Hongli

    2014-04-09

    Chinese medical universities typically have a high number of students, a shortage of teachers and limited equipment, and as such histology courses have been taught using traditional lecture-based formats, with textbooks and conventional microscopy. This method, however, has reduced creativity and problem-solving skills training in the curriculum. The virtual microscope (VM) system has been shown to be an effective and efficient educational strategy. The present study aims to describe a VM system for undergraduates and to evaluate the effects of promoting active learning and problem-solving skills. Two hundred and twenty-nine second-year undergraduate students in the Third Military Medical University were divided into two groups. The VM group contained 115 students and was taught using the VM system. The light microscope (LM) group consisted of 114 students and was taught using the LM system. Post-teaching performances were assessed by multiple-choice questions, short essay questions, case analysis questions and the identification of structure of tissue. Students' teaching preferences and satisfaction were assessed using questionnaires. Test scores in the VM group showed a significant improvement compared with those in the LM group (p 0.05); however, there were notable differences in the mean score rate of case analysis questions and identification of structure of tissue (p platform.

  10. Using Theory Integration to Explore Complex Health Problems.

    Science.gov (United States)

    Quinn, Brenna L

    2016-01-01

    Although nursing leaders call for theory utilization in research, use remains low within the discipline. The purpose of this article is to explore the application of interdisciplinary integration of models and theories to nursing research. An example of theory integration for the purposes of guiding a study relevant to school nursing is described. A conceptual-theoretical-empirical structure based on the Neuman's systems model, a nursing theory, integrated with the social communication model of pain, a psychology model, was developed to guide the study to examine pain assessment for schoolchildren with intellectual and developmental disabilities.

  11. Integrating Problem Solvers from Analogous Markets in New Product Ideation

    DEFF Research Database (Denmark)

    Franke, Nikolaus; Poetz, Marion; Schreier, Martin

    2014-01-01

    Who provides better inputs to new product ideation tasks, problem solvers with expertise in the area for which new products are to be developed or problem solvers from “analogous” markets that are distant but share an analogous problem or need? Conventional wisdom appears to suggest that target...... that including problem solvers from analogous markets versus the target market accounts for almost two-thirds of the well-known effect of involving lead users instead of average problem solvers. This effect is further amplified when the analogous distance between the markets increases, i.e., when searching...... market expertise is indispensable, which is why most managers searching for new ideas tend to stay within their own market context even when they do search outside their firms' boundaries. However, in a unique symmetric experiment that isolates the effect of market origin, we find evidence...

  12. Integration of the program TNXYZ in the platform SALOME; Integracion del programa TNXYZ en la plataforma SALOME

    Energy Technology Data Exchange (ETDEWEB)

    Chaparro V, F. J.; Silva A, L.; Del Valle G, E. [IPN, Escuela Superior de Fisica y Matematicas, Av. Instituto Politecnico Nacional s/n, U.P. Adolfo Lopez Mateos, Edificio 9, Col. San Pedro Zacatenco, 07738 Mexico D. F. (Mexico); Gomez T, A. M.; Vargas E, S., E-mail: javier.paquito@hotmail.com [ININ, Carretera Mexico-Toluca s/n, 52750 Ocoyoacac, Estado de Mexico (Mexico)

    2013-10-15

    This work presents the procedure realized to integrate the code TNXYZ like a processing tool to the graphic simulation platform SALOME. The code TNXYZ solves the neutron transport equation in stationary state, for several energy groups, quantizing the angular variable by the discrete ordinates method and the space variable by nodal methods. The platform SALOME is a graphic surrounding designed for the construction, edition and simulation of mechanical models focused to the industry and contrary to other software, it allows to integrate external source codes to the surrounding, to form a complete scheme of execution, supervision, pre and post information processing. The code TNXYZ was programmed in the 90s in a Fortran compiler, but to be used at the present time the code should be actualized to the current compiler characteristics; also, in the original scheme was carried out a modularization process, that is to say, the main program was divided in sections where the code carries out important operations, with the intention of flexibility the data extraction process along its processing sequence and that can be useful in a later development of coupling. Finally, to verify the integration a fuel assembly BWR was modeled, as well as a control cell. The cross sections were obtained with the Monte Carlo Serpent code. Some results obtained with Serpent were used to verify and to begin with the validation of the code, being obtained an acceptable comparison in the infinite multiplication factor. The validation process should extend and one has planned to present in a future work. This work is part of the development of the research group formed between the Escuela Superior de Fisica y Matematicas del Instituto Politecnico Nacional (IPN) and the Instituto Nacional de Investigaciones Nucleares (ININ) in which a simulation Mexican platform of nuclear reactors is developed. (Author)

  13. Integrated Cognitive-neuroscience Architectures for Understanding Sensemaking (ICArUS): Phase 2 Challenge Problem Walkthrough

    Science.gov (United States)

    2014-11-01

    Integrated Cognitive- neuroscience Architectures for Understanding Sensemaking (ICArUS): Phase 2 Challenge Problem Walkthrough Kevin Burns... neuroscience Architectures for Understanding Sensemaking (ICArUS) Phase 2 challenge problem. The pages include screen shots from the tutorial that...Burns, K., Fine, M., Bonaceto, C., & Oertel, C. (2014). Integrated Cognitive- neuroscience Architectures for Understanding Sensemaking (ICArUS

  14. On the integrability of the motion of 3D-Swinging Atwood machine and related problems

    Energy Technology Data Exchange (ETDEWEB)

    Elmandouh, A.A., E-mail: adel78@mans.edu.eg [Department of Mathematics and Statistics, Faculty of Science, King Faisal University, P.O. Box 400, Al-Ahsaa 31982 (Saudi Arabia); Department of Mathematics, Faculty of Science, Mansoura University, Mansoura 35516 (Egypt)

    2016-03-06

    In the present article, we study the problem of the motion of 3D- Swinging Atwood machine. A new integrable case for this problem is announced. We point out a new integrable case describing the motion of a heavy particle on a titled cone.

  15. The Western States Water Mission: A Hyper-Resolution Hydrological Modeling and Data Integration Platform

    Science.gov (United States)

    Famiglietti, James; Basilio, Ralph; Trangsrud, Amy; Andreadis, Kostas; Cricthon, Dan; David, Cedric; Farr, Thomas; Malhotra, Shan; Neff, Kirstin; Reager, John

    2016-04-01

    Hydrological remote sensing has advanced significantly over the last decade, and will continue to grow with number of recent and near-future launched. Arguably, a platform for synthesizing remote observations is an important step towards improved modeling, understanding and prediction of terrestrial hydrology. In this presentation we describe the new NASA Western States Water Mission, a high-resolution, catchment-based modeling and data assimilation platform implemented for the western United States. Model structure will be described, as well as early results that include assimilation of satellite snow observations. A key feature of model development has been its treatment as a 'flight project' which enables leveraging of important NASA systems engineering and project management expertise.

  16. Can the integration of a PLE in an e-portfolio platform improve generic competences?

    Directory of Open Access Journals (Sweden)

    Cristina Galván-Fernández

    2017-07-01

    Full Text Available The study analyzes the improvement in generic competences through e-portfolio/PLE platform and didactic planning. The new version of the platform, Digital Folder, contains utilities for students and teachers and some PLE components that help the learning process through e-portfolios. Didactic planning is compared for students from the University of Vic and the University of Barcelona, with a total of 61 participants. A questionnaire has been applied for measuring the use of functions and how much these functions aid in the improvement of the generic competences (reflection, planning and selection of information. The results confirm that the most helpful functions for students are: the Schedule, the Academic tasks, the Teacher’s portfolio and Dialogue with the teacher. However, the implication of these functions in the improvement of the competences depends on didactic planning overall for reflection on learning.

  17. End-to-end integrated security and performance analysis on the DEGAS Choreographer platform

    DEFF Research Database (Denmark)

    Buchholtz, Mikael; Gilmore, Stephen; Haenel, Valentin

    2005-01-01

    with the analysers of the calculi, and the results of the analysis are reflected back into a modified version of the input UML model. The design platform supporting the methodology, Choreographer, interoperates with state-of-the-art UML modelling tools. We illustrate the approach with a well known protocol...... and report on the experience of industrial users who have applied Choreographer in their development work....

  18. Modeling platform for integrated assessment of intervention propolsals in localities : case study, Medellin Metropolitan Area (Colombia)

    OpenAIRE

    2011-01-01

    This dissertation proposes a comprehensive framework for conceptual, methodological and instrumental contribution to urban intervention planning and public policy design. For a Latin American case study, a prospective multi-methodology modeling platform was developed to support the novel proposed approaches for intervention assessment, as well as to establish a knowledge building dynamic for planners using multidisciplinary discussion and, most importantly, paradigm confrontation and change. ...

  19. Fast Integration of One-Dimensional Boundary Value Problems

    Science.gov (United States)

    Campos, Rafael G.; Ruiz, Rafael García

    2013-11-01

    Two-point nonlinear boundary value problems (BVPs) in both unbounded and bounded domains are solved in this paper using fast numerical antiderivatives and derivatives of functions of L2(-∞, ∞). This differintegral scheme uses a new algorithm to compute the Fourier transform. As examples we solve a fourth-order two-point boundary value problem (BVP) and compute the shape of the soliton solutions of a one-dimensional generalized Korteweg-de Vries (KdV) equation.

  20. A CMOS-compatible silicon photonic platform for high-speed integrated opto-electronics

    Science.gov (United States)

    Galland, Christophe; Novack, Ari; Liu, Yang; Ding, Ran; Gould, Michael; Baehr-Jones, Tom; Li, Qi; Yang, Yisu; Ma, Yangjin; Zhang, Yi; Padmaraju, Kishore; Bergmen, Keren; Lim, Andy Eu-Jin; Lo, Guo-Qiang; Hochberg, Michael

    2013-05-01

    We have developed a CMOS-compatible Silicon-on-Insulator photonic platform featuring active components such as pi- n and photoconductive (MIM) Ge-on-Si detectors, p-i-n ring and Mach-Zehnder modulators, and traveling-wave modulators based on a p-n junction driven by an RF transmission line. We have characterized the yield and uniformity of the performance through automated cross-wafer testing, demonstrating that our process is reliable and scalable. The entire platform is capable of more than 40 GB/s data rate. Fabricated at the IME/A-STAR foundry in Singapore, it is available to the worldwide community through OpSIS, a successful multi-project wafer service based at the University of Delaware. After exposing the design, fabrication and performance of the most advanced platform components, we present our newest results obtained after the first public run. These include low loss passives (Y-junctions: 0.28 dB; waveguide crossings: 0.18 dB and cross-talk -41+/-2 dB; non-uniform grating couplers: 3.2+/-0.2 dB). All these components were tested across full 8" wafers and exhibited remarkable uniformity. The active devices were improved from the previous design kit to exhibit 3dB bandwidths ranging from 30 GHz (modulators) to 58 GHz (detectors). We also present new packaging services available to OpSIS users: vertical fiber coupling and edge coupling.

  1. Ocean Thermal Energy Conversion (OTEC) platform configuration and integration. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Scott, R. J.

    1978-07-01

    Studies leading to the development of conceptual designs for two 400 MW Offshore Thermal Energy Conversion (OTEC) Commercial Plants are summarized. A detailed overview of the study Final Report which was completed in Jun 1978 is presented. The successful deployment of a Commercial OTEC Plant in the near term is dependent upon the optimization of the platform configuration and power plant output level. The optimization procedure is based on both technical and economic factors and is used to evaluate a relatively large number of alternatives; i.e., six hullforms, five plant outputs ranging from 50 to 500 megawatts (MW), and three deployment sites. The hullforms under consideration include the ship (barge), cylinder (disc), spar, submersible, semi-submersible, and sphere; while the deployment sites are Hawaii, New Orleans, and Key West. The second part of the Summary describes the development of the two platforms selected by DOE to be carried through the Conceptual Design level: a 400 MW ship and semi-submersible. These studies include platform and cold water pipe (CWP) optimization trade-offs, arrangements, structure, position control, seawater systems, and auxiliary systems. Deployment concepts are also discussed, followed by definition of costs and schedules for both alternatives. A development plan to bring both Commercial Plant alternatives to fruition via an intermediate 100 MW Demonstration Plant which will reduce technical risks to an acceptable level is presented.

  2. Single-cell measurements of IgE-mediated FcεRI signaling using an integrated microfluidic platform.

    Directory of Open Access Journals (Sweden)

    Yanli Liu

    Full Text Available Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. Here, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chip flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn.

  3. Uniqueness of Inversion Problems Described by First-Kind Integral Equations

    Institute of Scientific and Technical Information of China (English)

    徐铁峰

    2002-01-01

    We propose a general method to prove the uniqueness of the inversion problems described by first-kind integral equations. The method depends on the analytical properties of the Fourier transform of the integral kernel and the finiteness of the total states (or probability, if normalized), the integration of the "local" density of states, which is a rather moderate condition and satisfied by many inversion problems arising from physics and engineering.

  4. The efficiency of direct integration methods in elastic contact-impact problems

    Institute of Scientific and Technical Information of China (English)

    Ibrahim H. Guzelbey; Ahmet Erklig; Bahattin Kanber; Keren Wang

    2005-01-01

    A comparison of direct integration methods is made and their efficiency is investigated for impact problems. Newmark, Wilson-θ, Central Difference and Houbolt Methods are used as direct integration methods. Impact analysis includes that of elastic and large deformation based upon updated Lagrangian including buckling check. The results show that the direct integration methods give different results in different contact-impact cases.

  5. EQUIVALENT BOUNDARY INTEGRAL EQUATIONS WITH INDIRECT VARIABLES FOR PLANE ELASTICITY PROBLEMS

    Institute of Scientific and Technical Information of China (English)

    张耀明; 温卫东; 张作泉; 孙焕纯; 吕和祥

    2003-01-01

    The exact form of the exterior problem for plane elasticity problems was produced and fully proved by the variational principle. Based on this, the equivalent boundary integral equations (EBIE) with direct variables, which are equivalent to the original boundary value problem, were deduced rigorously. The conventionally prevailing boundary integral equation with direct variables was discussed thoroughly by some examples and it is shown that the previous results are not EBIE.

  6. Integral geometry and inverse problems for hyperbolic equations

    CERN Document Server

    Romanov, V G

    1974-01-01

    There are currently many practical situations in which one wishes to determine the coefficients in an ordinary or partial differential equation from known functionals of its solution. These are often called "inverse problems of mathematical physics" and may be contrasted with problems in which an equation is given and one looks for its solution under initial and boundary conditions. Although inverse problems are often ill-posed in the classical sense, their practical importance is such that they may be considered among the pressing problems of current mathematical re­ search. A. N. Tihonov showed [82], [83] that there is a broad class of inverse problems for which a particular non-classical definition of well-posed ness is appropriate. This new definition requires that a solution be unique in a class of solutions belonging to a given subset M of a function space. The existence of a solution in this set is assumed a priori for some set of data. The classical requirement of continuous dependence of the solutio...

  7. Thermo-Economic Modelling and Process Integration of CO2-Mitigation Options on Oil and Gas Platforms

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Tock, Laurence; Breuhaus, Peter

    2014-01-01

    The offshore extraction of oil and gas is an energy-intensive process associated with large CO2 and CH4 emissions to the atmosphere and chemicals to the sea. The taxation of these emissions has encouraged the development of more energy-efficient and environmental-friendly solutions, of which three...... are assessed in this paper. The integration of steam bottoming cycles on the gas turbines or of lowtemperature power cycles on the export gas compression can result either in an additional power output, or in a greater export of natural gas. Another possibility is to implement a CO2-capture unit, which allows...... recovering CO2 that can be used for enhanced oil recovery. In this paper, a North Sea platform is considered as case study, and the site-scale retrofit integration of these three options is analysed, considering thermodynamic, economic and environmental performance indicators. The results illustrate...

  8. A heterogeneous III-V/silicon integration platform for on-chip quantum photonic circuits with single quantum dot devices

    CERN Document Server

    Davanco, Marcelo; Sapienza, Luca; Zhang, Chen-Zhao; Cardoso, Jose Vinicius De Miranda; Verma, Varun; Mirin, Richard; Nam, Sae Woo; Liu, Liu; Srinivasan, Kartik

    2016-01-01

    Photonic integration is an enabling technology for photonic quantum science, offering greater scalability, stability, and functionality than traditional bulk optics. Here, we describe a scalable, heterogeneous III-V/silicon integration platform to produce Si$_3$N$_4$ photonic circuits incorporating GaAs-based nanophotonic devices containing self-assembled InAs/GaAs quantum dots. We demonstrate pure singlephoton emission from individual quantum dots in GaAs waveguides and cavities - where strong control of spontaneous emission rate is observed - directly launched into Si$_3$N$_4$ waveguides with > 90 % efficiency through evanescent coupling. To date, InAs/GaAs quantum dots constitute the most promising solidstate triggered single-photon sources, offering bright, pure and indistinguishable emission that can be electrically and optically controlled. Si$_3$N$_4$ waveguides offer low-loss propagation, tailorable dispersion and high Kerr nonlinearities, desirable for linear and nonlinear optical signal processing d...

  9. An integrated ACO approach for the joint production and preventive maintenance scheduling problem in the flowshop sequencing problem.

    OpenAIRE

    Benbouzid-Sitayeb, Fatima; Ammi, Ismaïl; Varnier, Christophe; Zerhouni, Noureddine

    2008-01-01

    International audience; In this paper, an integrated ACO approach to solve joint production and preventive maintenance scheduling problem in permutation flowshops is considered. A newly developed antcolony algorithm is proposed and analyzed for solving this problem, based on a common representation of production and maintenance data, to obtain a joint schedule that is, subsequently, improved by a new local search procedure. The goal is to optimize a common objective function which takes into ...

  10. Integrated Floodplain Management, Environmental Change, and Geomorphology: Problems and Prospects

    NARCIS (Netherlands)

    Hudson, Paul F; Middelkoop, Hans

    2015-01-01

    Recognition of the failure of old perspectives on river management and the need to enhance environmental sustainability has stimulated a new approach to river management over the past couple of decades. The manner that river restoration and integrated management are implemented, however, requires a

  11. Robust integration schemes for junction-based modulators in a 200mm CMOS compatible silicon photonic platform (Conference Presentation)

    Science.gov (United States)

    Szelag, Bertrand; Abraham, Alexis; Brision, Stéphane; Gindre, Paul; Blampey, Benjamin; Myko, André; Olivier, Segolene; Kopp, Christophe

    2017-05-01

    Silicon photonic is becoming a reality for next generation communication system addressing the increasing needs of HPC (High Performance Computing) systems and datacenters. CMOS compatible photonic platforms are developed in many foundries integrating passive and active devices. The use of existing and qualified microelectronics process guarantees cost efficient and mature photonic technologies. Meanwhile, photonic devices have their own fabrication constraints, not similar to those of cmos devices, which can affect their performances. In this paper, we are addressing the integration of PN junction Mach Zehnder modulator in a 200mm CMOS compatible photonic platform. Implantation based device characteristics are impacted by many process variations among which screening layer thickness, dopant diffusion, implantation mask overlay. CMOS devices are generally quite robust with respect to these processes thanks to dedicated design rules. For photonic devices, the situation is different since, most of the time, doped areas must be carefully located within waveguides and CMOS solutions like self-alignment to the gate cannot be applied. In this work, we present different robust integration solutions for junction-based modulators. A simulation setup has been built in order to optimize of the process conditions. It consist in a Mathlab interface coupling process and device electro-optic simulators in order to run many iterations. Illustrations of modulator characteristic variations with process parameters are done using this simulation setup. Parameters under study are, for instance, X and Y direction lithography shifts, screening oxide and slab thicknesses. A robust process and design approach leading to a pn junction Mach Zehnder modulator insensitive to lithography misalignment is then proposed. Simulation results are compared with experimental datas. Indeed, various modulators have been fabricated with different process conditions and integration schemes. Extensive

  12. Arsenic removal from contaminated groundwater by membrane-integrated hybrid plant: optimization and control using Visual Basic platform.

    Science.gov (United States)

    Chakrabortty, S; Sen, M; Pal, P

    2014-03-01

    A simulation software (ARRPA) has been developed in Microsoft Visual Basic platform for optimization and control of a novel membrane-integrated arsenic separation plant in the backdrop of absence of such software. The user-friendly, menu-driven software is based on a dynamic linearized mathematical model, developed for the hybrid treatment scheme. The model captures the chemical kinetics in the pre-treating chemical reactor and the separation and transport phenomena involved in nanofiltration. The software has been validated through extensive experimental investigations. The agreement between the outputs from computer simulation program and the experimental findings are excellent and consistent under varying operating conditions reflecting high degree of accuracy and reliability of the software. High values of the overall correlation coefficient (R (2) = 0.989) and Willmott d-index (0.989) are indicators of the capability of the software in analyzing performance of the plant. The software permits pre-analysis, manipulation of input data, helps in optimization and exhibits performance of an integrated plant visually on a graphical platform. Performance analysis of the whole system as well as the individual units is possible using the tool. The software first of its kind in its domain and in the well-known Microsoft Excel environment is likely to be very useful in successful design, optimization and operation of an advanced hybrid treatment plant for removal of arsenic from contaminated groundwater.

  13. Sequenced Integration and the Identification of a Problem-Solving Approach through a Learning Process

    Science.gov (United States)

    Cormas, Peter C.

    2016-01-01

    Preservice teachers (N = 27) in two sections of a sequenced, methodological and process integrated mathematics/science course solved a levers problem with three similar learning processes and a problem-solving approach, and identified a problem-solving approach through one different learning process. Similar learning processes used included:…

  14. IMMEX Problem-Solving Software: Integrating Curriculum into Technology.

    Science.gov (United States)

    Underdahl, Jennifer

    2002-01-01

    Explains the history of IMMEX (Interactive Multi-Media Exercises) and its evolution into a Web-delivered, interactive software program, which assesses student understanding of curriculum in K-16 classrooms by tracking its application in real-world, problem-solving scenarios. Discusses performance feedback for teachers and students, and offers…

  15. Integrating perception and problem solving to predict complex object behaviours

    Science.gov (United States)

    Lyons, Damian M.; Chaudhry, Sirhan; Agica, Marius; Monaco, John Vincent

    2010-04-01

    One of the objectives of Cognitive Robotics is to construct robot systems that can be directed to achieve realworld goals by high-level directions rather than complex, low-level robot programming. Such a system must have the ability to represent, problem-solve and learn about its environment as well as communicate with other agents. In previous work, we have proposed ADAPT, a Cognitive Architecture that views perception as top-down and goaloriented and part of the problem solving process. Our approach is linked to a SOAR-based problem-solving and learning framework. In this paper, we present an architecture for the perceptive and world modelling components of ADAPT and report on experimental results using this architecture to predict complex object behaviour. A novel aspect of our approach is a 'mirror system' that ensures that the modelled background and foreground objects are synchronized with observations and task-based expectations. This is based on our prior work on comparing real and synthetic images. We show results for a moving object that collides and rebounds from its environment, hence showing that this perception-based problem solving approach has the potential to be used to predict complex object motions.

  16. GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis.

    Science.gov (United States)

    Costa, Raquel L; Gadelha, Luiz; Ribeiro-Alves, Marcelo; Porto, Fábio

    2017-01-01

    There are many steps in analyzing transcriptome data, from the acquisition of raw data to the selection of a subset of representative genes that explain a scientific hypothesis. The data produced can be represented as networks of interactions among genes and these may additionally be integrated with other biological databases, such as Protein-Protein Interactions, transcription factors and gene annotation. However, the results of these analyses remain fragmented, imposing difficulties, either for posterior inspection of results, or for meta-analysis by the incorporation of new related data. Integrating databases and tools into scientific workflows, orchestrating their execution, and managing the resulting data and its respective metadata are challenging tasks. Additionally, a great amount of effort is equally required to run in-silico experiments to structure and compose the information as needed for analysis. Different programs may need to be applied and different files are produced during the experiment cycle. In this context, the availability of a platform supporting experiment execution is paramount. We present GeNNet, an integrated transcriptome analysis platform that unifies scientific workflows with graph databases for selecting relevant genes according to the evaluated biological systems. It includes GeNNet-Wf, a scientific workflow that pre-loads biological data, pre-processes raw microarray data and conducts a series of analyses including normalization, differential expression inference, clusterization and gene set enrichment analysis. A user-friendly web interface, GeNNet-Web, allows for setting parameters, executing, and visualizing the results of GeNNet-Wf executions. To demonstrate the features of GeNNet, we performed case studies with data retrieved from GEO, particularly using a single-factor experiment in different analysis scenarios. As a result, we obtained differentially expressed genes for which biological functions were analyzed. The results

  17. GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis

    Science.gov (United States)

    Gadelha, Luiz; Ribeiro-Alves, Marcelo; Porto, Fábio

    2017-01-01

    There are many steps in analyzing transcriptome data, from the acquisition of raw data to the selection of a subset of representative genes that explain a scientific hypothesis. The data produced can be represented as networks of interactions among genes and these may additionally be integrated with other biological databases, such as Protein-Protein Interactions, transcription factors and gene annotation. However, the results of these analyses remain fragmented, imposing difficulties, either for posterior inspection of results, or for meta-analysis by the incorporation of new related data. Integrating databases and tools into scientific workflows, orchestrating their execution, and managing the resulting data and its respective metadata are challenging tasks. Additionally, a great amount of effort is equally required to run in-silico experiments to structure and compose the information as needed for analysis. Different programs may need to be applied and different files are produced during the experiment cycle. In this context, the availability of a platform supporting experiment execution is paramount. We present GeNNet, an integrated transcriptome analysis platform that unifies scientific workflows with graph databases for selecting relevant genes according to the evaluated biological systems. It includes GeNNet-Wf, a scientific workflow that pre-loads biological data, pre-processes raw microarray data and conducts a series of analyses including normalization, differential expression inference, clusterization and gene set enrichment analysis. A user-friendly web interface, GeNNet-Web, allows for setting parameters, executing, and visualizing the results of GeNNet-Wf executions. To demonstrate the features of GeNNet, we performed case studies with data retrieved from GEO, particularly using a single-factor experiment in different analysis scenarios. As a result, we obtained differentially expressed genes for which biological functions were analyzed. The results

  18. Problems of Reliability of Semiconductor Integrated Circuits in Plastic Housings,

    Science.gov (United States)

    1980-10-24

    of PNP transistors in plastic housings (expressed in % per 1000 h) with the 90% confidence level as a function of the sum of temperature T (in oC) and...semiconductor integrated circuits are basically modified versions of transistor housings. The characteristic feature of that type of a housing is...utilization of well-mastered technological processes introduced directly from the transistor production. Those housings have been thoroughly studied and

  19. Integration of gold-sputtered electrofluidic paper on wire-included analytical platforms for glucose biosensing.

    Science.gov (United States)

    Núnez-Bajo, Estefanía; Carmen Blanco-López, M; Costa-García, Agustín; Teresa Fernández-Abedul, M

    2017-05-15

    This work describes the fabrication and evaluation of an electroanalytical paper-based platform based on the combination of both, reusable and disposable materials in order to generate simple, versatile and low-cost microfluidic devices. With this aim, a holder containing metal wires that act as reusable reference and counter electrodes has been developed. The gold-sputtered paper electrode is disposable and easily interchangeable, meanwhile the platform that includes reference and counter electrodes can be reused. The detection zone in the paper is delimited by drawing a hydrophobic line with an inexpensive permanent marker. The effect of experimental variables such as adding solutions through the face where the gold was sputtered (upwards) or through the opposite one (downwards) as well as of other working parameters were studied by cyclic and differential pulse voltammetry with potassium ferrocyanide as a common redox probe and indicator species for enzymatic, immune and DNA biosensing. Enzymatic determination of glucose in real food samples prove the feasibility of the developed system for the construction of electrochemical biosensors. Copyright © 2017 Elsevier B.V. All rights reserved.

  20. Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing.

    Science.gov (United States)

    Park, Bongsoo; Park, Jongsun; Cheong, Kyeong-Chae; Choi, Jaeyoung; Jung, Kyongyong; Kim, Donghan; Lee, Yong-Hwan; Ward, Todd J; O'Donnell, Kerry; Geiser, David M; Kang, Seogchan

    2011-01-01

    The fungal genus Fusarium includes many plant and/or animal pathogenic species and produces diverse toxins. Although accurate species identification is critical for managing such threats, it is difficult to identify Fusarium morphologically. Fortunately, extensive molecular phylogenetic studies, founded on well-preserved culture collections, have established a robust foundation for Fusarium classification. Genomes of four Fusarium species have been published with more being currently sequenced. The Cyber infrastructure for Fusarium (CiF; http://www.fusariumdb.org/) was built to support archiving and utilization of rapidly increasing data and knowledge and consists of Fusarium-ID, Fusarium Comparative Genomics Platform (FCGP) and Fusarium Community Platform (FCP). The Fusarium-ID archives phylogenetic marker sequences from most known species along with information associated with characterized isolates and supports strain identification and phylogenetic analyses. The FCGP currently archives five genomes from four species. Besides supporting genome browsing and analysis, the FCGP presents computed characteristics of multiple gene families and functional groups. The Cart/Favorite function allows users to collect sequences from Fusarium-ID and the FCGP and analyze them later using multiple tools without requiring repeated copying-and-pasting of sequences. The FCP is designed to serve as an online community forum for sharing and preserving accumulated experience and knowledge to support future research and education.

  1. Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing

    Science.gov (United States)

    Park, Bongsoo; Park, Jongsun; Cheong, Kyeong-Chae; Choi, Jaeyoung; Jung, Kyongyong; Kim, Donghan; Lee, Yong-Hwan; Ward, Todd J.; O'Donnell, Kerry; Geiser, David M.; Kang, Seogchan

    2011-01-01

    The fungal genus Fusarium includes many plant and/or animal pathogenic species and produces diverse toxins. Although accurate species identification is critical for managing such threats, it is difficult to identify Fusarium morphologically. Fortunately, extensive molecular phylogenetic studies, founded on well-preserved culture collections, have established a robust foundation for Fusarium classification. Genomes of four Fusarium species have been published with more being currently sequenced. The Cyber infrastructure for Fusarium (CiF; http://www.fusariumdb.org/) was built to support archiving and utilization of rapidly increasing data and knowledge and consists of Fusarium-ID, Fusarium Comparative Genomics Platform (FCGP) and Fusarium Community Platform (FCP). The Fusarium-ID archives phylogenetic marker sequences from most known species along with information associated with characterized isolates and supports strain identification and phylogenetic analyses. The FCGP currently archives five genomes from four species. Besides supporting genome browsing and analysis, the FCGP presents computed characteristics of multiple gene families and functional groups. The Cart/Favorite function allows users to collect sequences from Fusarium-ID and the FCGP and analyze them later using multiple tools without requiring repeated copying-and-pasting of sequences. The FCP is designed to serve as an online community forum for sharing and preserving accumulated experience and knowledge to support future research and education. PMID:21087991

  2. WormBase as an Integrated Platform for the C. elegans ORFeome

    OpenAIRE

    Chen, Nansheng; Lawson, Daniel; Bradnam, Keith; Harris, Todd W.; Stein, Lincoln D.

    2004-01-01

    The ORFeome project has validated and corrected a large number of predicted gene models in the nematode C. elegans, and has provided an enormous resource for proteome-scale studies. To make the resource useful to the research and teaching community, it needs to be integrated with other large-scale data sets, including the C. elegans genome, cell lineage, neurological wiring diagram, transcriptome, and gene expression map. This integration is also critical because the ORFeome data sets, like o...

  3. THE INTEGRATION OF EDUCATION AND SCIENCE AS A GLOBAL PROBLEM

    Directory of Open Access Journals (Sweden)

    Anatoliy I. Rakitov

    2016-09-01

    Full Text Available Introduction: mankind is on the edge of a new techno-technological and socio-economical revolution generated by robotization and automation in all spheres of individual and socio-economical activity. Among numerous conceptions of global development only the conception of the knowledge-based society is the most adequate to contemporary terms. As the higher education and science are the main source of knowledge adequate to contemporary terms then their integration should be investigated. Materials and Methods: the material for this investigation was gathered as from individual experience in science and pedagogical activity of the author which were earlier published in hundreds of articles and fifteen monograph translated in eleven languages, as the materials of Moscow city seminar, the results of which were published in annual “Science of science investigations”. This annual has been editing since 2004 and the author is the editor-in-chief of this edition. Also has been used other sources from different editions. The method of comparative analysis was used. Results: the author put forward the conception of inevitable integration of higher school and research institutions and forming a new structure – science-education consortium. Only such united structure can significantly rise both scientific researchers and higher education. And as a result, it will rise publishing activity and application of scientific researchers in real econ omy, social sphere, technological leadership. Discussion and Conclusions: conception put forward in this article fragmentary has been published by author earlier and initiated discussion in scientific press, which was reflected in home RISC and abroad citation indexes. The author proclaims the inevitability of realization of the suggested by him conception of the utmost integration of science and higher education.

  4. QUANTUM COMPLEXITY OF THE INTEGRATION PROBLEM FOR ANISOTROPIC CLASSES

    Institute of Scientific and Technical Information of China (English)

    Xiao-fei Hu; Pei-xin Ye

    2005-01-01

    We obtain the optimal order of high-dimensional integration complexity in the quantum computation model in anisotropic Sobolev classes Wr∞ ([0, 1]d) and Holder Nikolskii classes Hr∞([0, 1]d). It is proved that for these classes of functions there is a speed-up of quantum algorithms over deterministic classical algorithms due to factor n-1 and over randomized classical methods due to factor n-1/2. Moreover, we give an estimation for optimal query complexity in the class H∧∞ (D) whose smoothness index is the boundary of some complete set in Zd+.

  5. Investigation of learning environment for arithmetic word problems by problem posing as sentence integration in Indonesian language

    Science.gov (United States)

    Hasanah, N.; Hayashi, Y.; Hirashima, T.

    2017-02-01

    Arithmetic word problems remain one of the most difficult area of teaching mathematics. Learning by problem posing has been suggested as an effective way to improve students’ understanding. However, the practice in usual classroom is difficult due to extra time needed for assessment and giving feedback to students’ posed problems. To address this issue, we have developed a tablet PC software named Monsakun for learning by posing arithmetic word problems based on Triplet Structure Model. It uses the mechanism of sentence-integration, an efficient implementation of problem-posing that enables agent-assessment of posed problems. The learning environment has been used in actual Japanese elementary school classrooms and the effectiveness has been confirmed in previous researches. In this study, ten Indonesian elementary school students living in Japan participated in a learning session of problem posing using Monsakun in Indonesian language. We analyzed their learning activities and show that students were able to interact with the structure of simple word problem using this learning environment. The results of data analysis and questionnaire suggested that the use of Monsakun provides a way of creating an interactive and fun environment for learning by problem posing for Indonesian elementary school students.

  6. Integration Between SCORM Learning Objects and the CIEMAT Virtual Elearning Platform; Integracion de Objetos de Aprendizaje SCORM con la Plataforma de Ensenanza Virtual del CIEMAT

    Energy Technology Data Exchange (ETDEWEB)

    Bailador Ferreras, M. A.; Troiani, S.; Gonzalez Giralda, C.; Llorente Herranz, C.; Marco Arboli, M. L.

    2010-08-06

    New information and communications technologies have made a major contribution in the way of understanding the training needs, which have been involved in the change from the traditional teaching to the use of virtual learning platforms. Thus, Ciemat, has installed a virtual platform for education, in particular MOODLE in which have been installed some virtual contents developed with Flash. The next necessary step has been how to integrate the contents with the MOODLE virtual platform, following the aim to know the assessment for learning tracking of the learners. This document provides the technological facts for the integration of the flash virtual contents and the virtual platform in order to achieve the training process is efficiently evaluated. (Author) 5 refs.

  7. Integrated Cu-based TM-pass polarizer using CMOS technology platform

    KAUST Repository

    Ng, Tien Khee

    2010-01-01

    A transverse-magnetic-pass (TM-pass) copper (Cu) polarizer is proposed and analyzed using the previously published two-dimensional Method-of-Lines beam-propagation model. The proposed polarizer exhibits a simulated high-pass filter characteristics, with TM0 and TE0 mode transmissivity of >70% and <5%, respectively, in the wavelength regime of 1.2-1.6 μm. The polarization extinction ratio (PER) given by 10 log10 (PTM0)/(PTE0) is +11.5 dB across the high-pass wavelength regime. To the best of the authors\\' knowledge, we report here the smallest footprint CMOS-platform compatible TM-polarizer.

  8. Multichannel bipotentiostat integrated with a microfluidic platform for electrochemical real-time monitoring of cell cultures.

    Science.gov (United States)

    Vergani, Marco; Carminati, Marco; Ferrari, Giorgio; Landini, Ettore; Caviglia, Claudia; Heiskanen, Arto; Comminges, Clément; Zór, Kinga; Sabourin, David; Dufva, Martin; Dimaki, Maria; Raiteri, Roberto; Wollenberger, Ulla; Emneus, Jenny; Sampietro, Marco

    2012-10-01

    An electrochemical detection system specifically designed for multi-parameter real-time monitoring of stem cell culturing/differentiation in a microfluidic system is presented. It is composed of a very compact 24-channel electronic board, compatible with arrays of microelectrodes and coupled to a microfluidic cell culture system. A versatile data acquisition software enables performing amperometry, cyclic voltammetry and impedance spectroscopy in each of the 12 independent chambers over a 100 kHz bandwidth with current resolution down to 5 pA for 100 ms measuring time. The design of the platform, its realization and experimental characterization are reported, with emphasis on the analysis of impact of input capacitance (i.e., microelectrode size) and microfluidic pump operation on current noise. Programmable sequences of successive injections of analytes (ferricyanide and dopamine) and rinsing buffer solution as well as the impedimetric continuous tracking for seven days of the proliferation of a colony of PC12 cells are successfully demonstrated.

  9. On the Integrated Job Scheduling and Constrained Network Routing Problem

    DEFF Research Database (Denmark)

    Gamst, Mette

    This paper examines the NP-hard problem of scheduling a number of jobs on a finite set of machines such that the overall profit of executed jobs is maximized. Each job demands a number of resources, which must be sent to the executing machine via constrained paths. Furthermore, two resource demand...... transmissions cannot use the same edge in the same time period. An exact solution approach based on Dantzig-Wolfe decomposition is proposed along with several heuristics. The methods are computationally evaluated on test instances arising from telecommunications with up to 500 jobs and 500 machines. Results...

  10. Boundary integral equation methods in eigenvalue problems of elastodynamics and thin plates

    CERN Document Server

    Kitahara, M

    1985-01-01

    The boundary integral equation (BIE) method has been used more and more in the last 20 years for solving various engineering problems. It has important advantages over other techniques for numerical treatment of a wide class of boundary value problems and is now regarded as an indispensable tool for potential problems, electromagnetism problems, heat transfer, fluid flow, elastostatics, stress concentration and fracture problems, geomechanical problems, and steady-state and transient electrodynamics.In this book, the author gives a complete, thorough and detailed survey of the method. It pro

  11. Fabrication of an infrared emitter using a generic integration platform based on wire bonding

    Science.gov (United States)

    Schröder, S.; Rödjegård, H.; Fischer, A. C.; Stemme, G.; Niklaus, F.

    2016-11-01

    This paper reports a novel approach for the fabrication of infrared (IR) emitters for non-dispersive IR gas sensing. The proposed concept enables the integration of superior resistive heater materials with microelectromechanical system structures. In this study, non-bondable filaments made of nickel chromium are attached to mechanical attachment structures using a fully automated state-of-the-art wire bonder. Formation of electrical contact between the integrated filaments and the electrical contact pattern on the substrate is performed using conventional gold stud bumping technology. The placement accuracy of the integrated filaments is evaluated using white-light interferometry, while the contact formation using stud bumping to embed the filaments is investigated using focused ion beam milled cross-sections. A proof-of-concept IR emitter has been successfully operated and heated up to {{960}\\circ}\\text{C} in continuous mode for 3 h.

  12. Giant enhancement of light emission from Au nanocrystals into a porous matrix integrated with silicon platform.

    Science.gov (United States)

    Kisner, Alexandre; de Aguiar, Marina Rodrigues; Kubota, Lauro T

    2009-04-01

    Integration of metal nanoparticle-dielectric films with silicon technology is emerging as a promising candidate for sub-wavelength optoelectronics and correlated devices. A giant enhancement of the luminescence intensity of gold nanocrystals directly prepared on a nanoporous template of anodized aluminium oxide is evaluated herewith, for the first time in literature, as a favourable substrate for integrating silicon-based optoelectronics. The size and lateral separation between adjacent particles are controlled by the geometry of the dielectric matrix and on-chip-integration is achieved during the nanoparticle growth, requiring no further steps. A more pronounced photoresponse is observed with embedded nanocrystals as small as 12 nm and the high emission is attributed to the light confinement associated to the increase of the local field effect on the surface plasmon hybridization waves. The demonstrated ability to control the assemble of the nanocrystals and the intense light emission indicate that the embedded gold nanostructures have a high potential for plasmonic device applications.

  13. Application of Cloud Computing in the Intelligent Medical Integration Platform%云计算在智慧医疗集成平台中的应用

    Institute of Scientific and Technical Information of China (English)

    王琳华

    2014-01-01

    Digital hospital information integration requires fusion of medical information of a variety of intelligent devices, and professional medical services facing to regional healthcare and users. Using cloud computing technology, through the server virtualization, the data collection is realized. This method is high-efficiency, easy to maintain and easy to manage. The information security is improved. Cloud computing technology can solve the problems of intelligent healthcare integration platform, such as high operational cost and big information security risks. Mobile medical healthcare is realized, and it can better promote the development of intelligent healthcare.%数字化医院信息集成需要融合多种智能设备医疗信息,提供面向区域医疗及用户的专业化医疗服务。利用云计算技术,通过服务器虚拟化来实现数据的集合,这种方式高效,易维护,易管理,全面提升信息安全。云计算技术能够解决智慧医疗集成平台中运维成本高,信息安全风险大等问题,实现移动医疗,更好地促进智慧医疗的发展。

  14. Solving the Imaging Problem with Coherently Integrated Multiwavelength Data

    CERN Document Server

    Schmitt, H R; Armstrong, J T; Mozurkewich, D; Jorgensen, A M; Hindsley, R B; Tycner, C; Zavala, R T; Benson, J A; Hutter, D J

    2008-01-01

    Recovering images from optical interferometric observations is one of the major challenges in the field. Unlike the case of observations at radio wavelengths, in the optical the atmospheric turbulence changes the phases on a very short time scale, which results in corrupted phase measurements. In order to overcome these limitations, several groups developed image reconstruction techniques based only on squared visibility and closure phase information, which are unaffected by atmospheric turbulence. We present the results of two techniques used by our group, which employed coherently integrated data from the Navy Prototype Optical Interferometer. Based on these techniques we were able to recover complex visibilities for several sources and image them using standard radio imaging software. We describe these techniques, the corrections applied to the data, present the images of a few sources, and discuss the implications of these results.

  15. Psychological characteristics of juvenile offenders with constant integration problems

    Directory of Open Access Journals (Sweden)

    Démuthová Slávka

    2012-01-01

    Full Text Available The aim of this study is to identify the typical psychological, demographic, socio-economical, educational, health, and criminological characteristics of juvenile delinquents who tend to continue in their criminal career to adulthood and therefore obstruct the possibility of successful, non-offending integration to society. Subjects of research were young male prisoners jailed in the Juvenile imprisonment house that completed the test battery. By ex-post analysis after a period of five years, the differences between offenders and non-offenders were identified. Results show significant differences in the age of prisoners, length of imprisonment, presence of violent offence (esp. robbery in the criminal history, number of previous offences recorded, differences in factors i, h, and q1 from the Sixteen Personality Factor Questionnaire, responses within the Hand test characteristic (affection, dependence, and communication, and in several signs of the drawings in a Draw-A-Person test. The importance and influence of listed factors is discussed.

  16. Life performance of oil and gas platforms: Site integration and thermodynamic evaluation

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Fülöp, Tamás Gábor; Breuhaus, Peter

    2014-01-01

    requirements are assessed by a process integration study, and the system inefficiencies are pinpointed by performing an exergy accounting. The heating and cooling requirements vary significantly over time, and most inefficiencies take place in processes where chemical exergy is consumed (50-55%), thermal...... exergy is transferred (15-20%), or mechanical exergy is varied (10-15%). These findings are valid for all production periods: this suggests that more attention should be paid on a proper integration of the processing and utility plants, by, for instance, recovering heat from the turbine exhausts and from...

  17. Problems of integrating between innovative enterprises and a researching university

    Directory of Open Access Journals (Sweden)

    Andrey Gennadyevich Svetlakov

    2011-03-01

    Full Text Available The problems that currently face the establishments of agriculture are the following: competition with import products, regionalization of support, i.e. prevention to a single market space formation, monopolization of processing enterprises and sensitivity to investments. The technique of assessing the level of economic security of the agroindustrial complex organizations was suggested and described. It identifies the indicators of economic security, indicative markers of economic security and thresholds for performance indicators, current values of performance indicators etc. At the same time, such indicators of economic security of agroindustrial complex organizations are used: availability of arable land, labour, funds etc.; profitability, efficiency, and cost effectiveness. This technique will reduce the risks to economic security of agroindustrial complex organizations, improve quality of life and enhance food security of the state.

  18. Prototyping a Knowledge IntegrationFramework to Solve Science Problems

    Science.gov (United States)

    Graves, S.; Conover, H.; Ramachandran, R.; Movva, S.; Fox, P.; McGuinness, D. L.

    2007-12-01

    Key information technology advances in recent years include the emergence of distributed computing architectures based on web services; knowledge engineering efforts as evidenced by the development of science domain ontologies in the Semantic Web; and growing interest in scientific data mining as a means for automated knowledge extraction from the ever-increasing volumes of science observations and model data available. We present the results of our prototype study that bring together these key information technology components, as applied to the problem of feature extraction and morphology identification for multi-wavelength images of the Sun. We present, the science application, the linked ontologies describing both the data mining, manipulation and analysis services as well as the science domain; and a web-based user interface based on an existing smart search tool (NOESIS) which allows a user to discover and explore available data and perform the desired analysis.

  19. Training tomorrow's environmental problem-solvers: an integrative approach to graduate education

    Science.gov (United States)

    Environmental problems are generally complex and blind to disciplinary boundaries. Efforts to devise long-term solutions require collaborative research that integrates knowledge across historically disparate fields, yet the traditional model for training new scientists emphasizes personal independe...

  20. Integration of Environmental Analytical Chemistry with Environmental Law: The Development of a Problem-Based Laboratory.

    Science.gov (United States)

    Cancilla, Devon A.

    2001-01-01

    Introduces an undergraduate level problem-based analytical chemistry laboratory course integrated with an environmental law course. Aims to develop an understanding among students on the use of environmental indicators for environmental evaluation. (Contains 30 references.) (YDS)

  1. Integral Transforms and a Class of Singular S-Hermitian Eigenvalue Problems

    NARCIS (Netherlands)

    Dijksma, A.; Snoo, H.S.V. de

    1973-01-01

    For a class of singular S-hermitian eigenvalue problems we show that the corresponding integral transforms are surjective. This class was discussed by us earlier and is more restricted than the one, which has been considered by others.

  2. SenSyF Experience on Integration of EO Services in a Generic, Cloud-Based EO Exploitation Platform

    Science.gov (United States)

    Almeida, Nuno; Catarino, Nuno; Gutierrez, Antonio; Grosso, Nuno; Andrade, Joao; Caumont, Herve; Goncalves, Pedro; Villa, Guillermo; Mangin, Antoine; Serra, Romain; Johnsen, Harald; Grydeland, Tom; Emsley, Stephen; Jauch, Eduardo; Moreno, Jose; Ruiz, Antonio

    2016-08-01

    SenSyF is a cloud-based data processing framework for EO- based services. It has been pioneer in addressing Big Data issues from the Earth Observation point of view, and is a precursor of several of the technologies and methodologies that will be deployed in ESA's Thematic Exploitation Platforms and other related systems.The SenSyF system focuses on developing fully automated data management, together with access to a processing and exploitation framework, including Earth Observation specific tools. SenSyF is both a development and validation platform for data intensive applications using Earth Observation data. With SenSyF, scientific, institutional or commercial institutions developing EO- based applications and services can take advantage of distributed computational and storage resources, tailored for applications dependent on big Earth Observation data, and without resorting to deep infrastructure and technological investments.This paper describes the integration process and the experience gathered from different EO Service providers during the project.

  3. The Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services and the challenge of integrating social sciences and humanities

    Directory of Open Access Journals (Sweden)

    Stenseke Marie

    2016-09-01

    Full Text Available For the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES, established in 2012, under the auspices of four United Nations entities (FAO, UNDP, UNEP and UNESCO, there is an urgent need to engage scholars in social sciences and humanities in assessing the state of the planet’s biodiversity. This article addresses the fundaments for involving scientists from these fields of science in IPBES, and reflects on the existing barriers. It builds on previous research on IPBES from various perspectives, as well as on the author’s insights from work in the organization. A fundamental condition recognized is that there needs to be a qualified understanding of what it means to integrate natural sciences and social sciences/humanities, and also that the latter have to be accepted on their own terms. Other barriers are related to the contextualisation of biodiversity issues and the more politically sensitive character of research carried out in social sciences and humanities. In the conclusions it is emphasized that the deliverables of the first round of IPBES assessments have to be solid enough from the perspectives of social sciences and humanities, in order to attract more of these scholars to work for the platform in the future.

  4. Integration proposal through standard-based design of an end-to-end platform for p-Health environments.

    Science.gov (United States)

    Martíínez, I; Trigo, J D; Martínez-Espronceda, M; Escayola, J; Muñoz, P; Serrano, L; García, J

    2009-01-01

    Interoperability among medical devices and compute engines in the personal environment of the patient, and with healthcare information systems in the remote monitoring and management process is a key need that requires developments supported on standard-based design. Even though there have been some international initiatives to combine different standards, the vision of an entire end-to-end standard-based system is the next challenge. This paper presents the implementation guidelines of a ubiquitous platform for Personal Health (p-Health). It is standard-based using the two main medical norms in this context: ISO/IEEE11073 in the patient environment for medical device interoperability, and EN13606 to allow the interoperable communication of the Electronic Healthcare Record of the patient. Furthermore, the proposal of a new protocol for End-to-End Standard Harmonization (E2ESHP) is presented in order to make possible the end-to-end standard integration. The platform has been designed to comply with the last ISO/IEEE11073 and EN13606 available versions, and tested in a laboratory environment as a proof-of-concept to illustrate its feasibility as an end-to-end standard-based solution.

  5. WELCOME – innovative integrated care platform using wearable sensing and smart cloud computing for COPD patients with comorbidities.

    Science.gov (United States)

    Chouvarda, Ioanna; Philip, Nada Y; Natsiavas, Pantelis; Kilintzis, Vasilis; Sobnath, Drishty; Kayyali, Reem; Henriques, Jorge; Paiva, Rui Pedro; Raptopoulos, Andreas; Chételat, Olivier; Maglaveras, Nicos

    2014-01-01

    We propose WELCOME, an innovative integrated care platform using wearable sensors and smart cloud computing for Chronic Obstructive Pulmonary Disease (COPD) patients with co-morbidities. WELCOME aims to bring about a change in the reactive nature of the management of chronic diseases and its comorbidities, in particular through the development of a patient centred and proactive approach to COPD management. The aim of WELCOME is to support healthcare services to give early detection of complications (potentially reducing hospitalisations) and the prevention and mitigation of comorbidities (Heart Failure, Diabetes, Anxiety and Depression). The system incorporates patient hub, where it interacts with the patient via a light vest including a large number of non-invasive chest sensors for monitoring various relevant parameters. In addition, interactive applications to monitor and manage diabetes, anxiety and lifestyle issues will be provided to the patient. Informal carers will also be supported in dealing with their patients. On the other hand, welcome smart cloud platform is the heart of the proposed system where all the medical records and the monitoring data are managed and processed via the decision support system. Healthcare professionals will be able to securely access the WELCOME applications to monitor and manage the patient's conditions and respond to alerts on personalized level.

  6. The integration of 3D carbon-electrode dielectrophoresis on a CD-like centrifugal microfluidic platform.

    Science.gov (United States)

    Martinez-Duarte, Rodrigo; Gorkin, Robert A; Abi-Samra, Kameel; Madou, Marc J

    2010-04-21

    We introduce the integration of a novel dielectrophoresis (DEP)-assisted filter with a compact disk (CD)-based centrifugal platform. Carbon-electrode dielectrophoresis (carbon-DEP) refers to the use of carbon electrodes to induce DEP. In this work, 3D carbon electrodes are fabricated using the C-MEMS technique and are used to implement a DEP-enabled active filter to trap particles of interest. Compared to traditional planar metal electrodes, 3D carbon electrodes allow for superior filtering efficiency. The system includes mounting modular 3D carbon-DEP chips on an electrically interfaced rotating disk. This allows simple centrifugal pumping to replace the large footprint syringe pump approaches commonly used in DEP systems. The advantages of the CD setup include not only a reduced footprint, but also complexity and cost reduction by eliminating expensive precision pumps and fluidic interconnects. To demonstrate the viability of this system we quantified the filter efficiency in the DEP trapping of yeast cells from a mix of latex and yeast cells. Results demonstrate selective filtering at flow rates up to 35 microl min(-1). The impact of electrode height, DEP chip misalignment and particle sedimentation on filter efficiency and the advantages this system represents are analyzed. The ultimate goal is to obtain an automated platform for bioparticle sorting with application in different fields such as point-of-care diagnostics and cell-based therapies.

  7. Electro pneumatic trainer embedded with programmable integrated circuit (PIC) microcontroller and graphical user interface platform for aviation industries training purposes

    Science.gov (United States)

    Burhan, I.; Azman, A. A.; Othman, R.

    2016-10-01

    An electro pneumatic trainer embedded with programmable integrated circuit (PIC) microcontroller and Visual Basic (VB) platform is fabricated as a supporting tool to existing teaching and learning process, and to achieve the objectives and learning outcomes towards enhancing the student's knowledge and hands-on skill, especially in electro pneumatic devices. The existing learning process for electro pneumatic courses conducted in the classroom does not emphasize on simulation and complex practical aspects. VB is used as the platform for graphical user interface (GUI) while PIC as the interface circuit between the GUI and hardware of electro pneumatic apparatus. Fabrication of electro pneumatic trainer interfacing between PIC and VB has been designed and improved by involving multiple types of electro pneumatic apparatus such as linear drive, air motor, semi rotary motor, double acting cylinder and single acting cylinder. Newly fabricated electro pneumatic trainer microcontroller interface can be programmed and re-programmed for numerous combination of tasks. Based on the survey to 175 student participants, 97% of the respondents agreed that the newly fabricated trainer is user friendly, safe and attractive, and 96.8% of the respondents strongly agreed that there is improvement in knowledge development and also hands-on skill in their learning process. Furthermore, the Lab Practical Evaluation record has indicated that the respondents have improved their academic performance (hands-on skills) by an average of 23.5%.

  8. Integrated microfluidic platform for bilayer studies and experimentation on single pore-forming species

    NARCIS (Netherlands)

    Stimberg, V.C.; Berg, van den A.; Le Gac, S.

    2011-01-01

    The combination of microfluidics with BLMs (bilayer lipid membranes) consists of a powerful tool for multiplexed and high-throughput studies on membrane properties and membrane proteins. Here, we report an integrated device for BLM ex-perimentation using both optical and electrical measurements. Thi

  9. BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

    DEFF Research Database (Denmark)

    2016-01-01

    Genome-scale metabolic models are mathematically-structured knowledge bases that can be used to predict metabolic pathway usage and growth phenotypes. Furthermore, they can generate and test hypotheses when integrated with experimental data. To maximize the value of these models, centralized...

  10. Integrative platform based on the mechatronics model for educational technologies focused on competence

    Science.gov (United States)

    Vlaşin, I.; Greta, S.; Dache, L.; Mătieş, V.

    2016-08-01

    Mechatronics is a model of transdisciplinary integration, entirely functional, with remarkable results for mankind. The incredible progress that the global economy has taken in the last decades is based on this new approach, the integrative type, which is present at the foundation of mechatronics. This kind of integrative approach is necessary for building a quality education focused on competence. The requirements from the social and economic environment, the needs of the young people who prepare themselves for an active life and the offers of the education providers are still not too interconnected to offer a satisfying education. This is the reason why the efforts to balance the demand, the needs and the offer are essential to ensure a better integration of students into society. Using a transcultural perspective, we can achieve a constructive approach. The education providers, together with the socio-economic environment, establish a clear structure of competence in multiple domains and of the instruments which can assure it. The scientific demarche, in the spirit of this paper approach the, answers the natural questions from the educational process: „Why, How and What do I learn?”.

  11. Integrated Biological Warfare Technology Platform (IBWTP). Intelligent Software Supporting Situation Awareness, Response, and Operations

    Science.gov (United States)

    2007-01-01

    21 4.3.1. Existing Biosurveillance Systems .............................................................. 22 4.3.2. Automatic Integration...Expert Team Risk Assessment Emergency Plans Command Centers IPE – Intelligent Portal - IPE Interactive Knowledge Wall Presentation Collaboration...such as existing biosurveillance systems, information produced via technological approaches can be incorporated into IBWTP in a fairly transparent

  12. Perfusion-based three dimensional (3D) tissue engineering platform with integrated bioimpedance sensing

    DEFF Research Database (Denmark)

    Muhammad, Haseena Bashir; Canali, Chiara; Heiskanen, Arto

    2014-01-01

    We present an 8-channel bioreactor array with integrated bioimpedance sensors, which enables perfusion culture of cells seeded onto porous 3D scaffolds. Results show the capability of the system for monitoring cell proliferation within the scaffolds through a culture period of 19 days....

  13. Design and Implementation of Distributed Management Platform for Integrated Systems%校园分布式系统集成管理平台的设计与实现

    Institute of Scientific and Technical Information of China (English)

    李丹

    2013-01-01

      为解决目前高校多层级的分布式系统集成平台导致的管理问题,提出一种集中式和分布式管理机制相结合的管理平台,引入资源、域和工作组等相关概念,分别从物理层和业务层对集成系统进行管理,提高了集成平台的适应性。管理平台采用J2EE、Streams、web服务等开发技术实现。%In order to solve the problem of college,which caused by the distributed,multi-level management platform for integrated system,a management plaform combinated of a centralized and distributed management mechanism is proposed.The introduction of related concepts such as resources,domain and workgroup lead to the integrated system management from the phycal layer and the business layer which improve the adaptability of the integration platform.The development of management platform use J2EE,Streams and web services and so on.

  14. 一种基于SOA的企业集成平台%SOA-based Enterprise Integration Platform

    Institute of Scientific and Technical Information of China (English)

    张朝晖; 徐立臻; 董逸生; 徐宏炳

    2011-01-01

    An SOA-based enterprise integration platform called JSSOA is presented.Cored on Enterprise Service Integration(ESI) middleware,JSSOA supports transparent integration of heterogeneous systems and services, MDA-based and business user oriented process modeling and service composition, semantic and QoS based service finding and service oriented UI creating.JSSOA simplifies the creation, running and maintenance of SOA-based applications by encapsulating the complicate details of SOA technology.%提出一种基于SOA的企业集成平台--JSSOA,以企业服务集成中间件为核心,实现异构系统和多种类型服务的透明集成,支持基于MDA方法面向最终用户的流程建模和服务组合、基于语义及QoS的服务查找、基于服务的个性化应用系统用户界面创制.该平台封装了复杂的SOA技术细节,使基于SOA的应用系统的构建、运行和维护更简单、高效.

  15. Slow Integral Manifolds and Control Problems in Critical and Twice Critical Cases

    Science.gov (United States)

    Sobolev, Vladimir

    2016-06-01

    We consider singularly perturbed differential systems in cases where the standard theory to establish a slow integral manifold existence does not work. The theory has traditionally dealt only with perturbation problems near normally hyperbolic manifold of singularities and this manifold is supposed to isolated. Applying transformations we reduce the original singularly perturbed problem to a regularized one such that the existence of slow integral manifolds can be established by means of the standard theory. We illustrate our approach by several examples.

  16. Investigating the Nexus of Climate, Energy, Water, and Land at Decision-Relevant Scales: The Platform for Regional Integrated Modeling and Analysis (PRIMA)

    Energy Technology Data Exchange (ETDEWEB)

    Kraucunas, Ian P.; Clarke, Leon E.; Dirks, James A.; Hathaway, John E.; Hejazi, Mohamad I.; Hibbard, Kathleen A.; Huang, Maoyi; Jin, Chunlian; Kintner-Meyer, Michael C.W.; Kleese van Dam, Kerstin; Leung, Lai-Yung R.; Li, Hongyi; Moss, Richard H.; Peterson, Marty J.; Rice, Jennie S.; Scott, Michael J.; Thomson, Allison M.; Voisin, Nathalie; West, Tristram O.

    2015-04-01

    The Platform for Regional Integrated Modeling and Analysis (PRIMA) is an innovative modeling system developed at Pacific Northwest National Laboratory (PNNL) to simulate interactions among natural and human systems at scales relevant to regional decision making. PRIMA brings together state-of-the-art models of regional climate, hydrology, agriculture, socioeconomics, and energy systems using a flexible coupling approach. The platform can be customized to inform a variety of complex questions and decisions, such as the integrated evaluation of mitigation and adaptation options across a range of sectors. Research into stakeholder decision support needs underpins the platform's application to regional issues, including uncertainty characterization. Ongoing numerical experiments are yielding new insights into the interactions among human and natural systems on regional scales with an initial focus on the energy-land-water nexus in the upper U.S. Midwest. This paper focuses on PRIMA’s functional capabilities and describes some lessons learned to date about integrated regional modeling.

  17. Human health impacts for renewable energy scenarios from the EnerGEO Platform of Integrated Assessment (PIA)

    Energy Technology Data Exchange (ETDEWEB)

    Lefevre, Mireille; Gschwind, Benoit; Blanc, Isabelle; Ranchin, Thierry [MINES ParisTech, Sophia Antipolis (France). Observation, Impacts, Energy Center; Wyrwa, Artur; Drebszok, Kamila [AGH Univ. of Science and Technology, Krakow (Poland); Cofala, Janusz; Fuss, Sabine [International Institute for Applied Systems Analysis (IIASA), Laxenburg (Austria)

    2013-07-01

    This article reports impact results from running the EnerGEO Platform of Integrated Assessment (PIA) related to human health for different scenarios in Europe. The scenarios were prepared within the EnerGEO project. The idea of this European project is to determine how low carbon scenarios, and in particular scenarios with a high share of renewable energy, affect concentrations of air pollutants and as a consequence affect human health. PM{sub 2.5} concentrations were estimated with the IIASA Greenhouse Gas and Air Pollution Interactions and Synergies (GAINS) model on a time horizon up to the year 2050 for different scenarios. We analyse here the estimation of the Loss of Life Expectancy due to PM{sub 2.5} concentrations for the Baseline scenario taken as a reference and the Maximum renewable power scenario. (orig.)

  18. Assessing integrated pest management adoption: measurement problems and policy implications.

    Science.gov (United States)

    Puente, Molly; Darnall, Nicole; Forkner, Rebecca E

    2011-11-01

    For more than a decade, the U.S. government has promoted integrated pest management (IPM) to advance sustainable agriculture. However, the usefulness of this practice has been questioned because of lagging implementation. There are at least two plausible rationales for the slow implementation: (1) growers are not adopting IPM-for whatever reason-and (2) current assessment methods are inadequate at assessing IPM implementation. Our research addresses the second plausibility. We suggest that the traditional approach to measuring IPM implementation on its own fails to assess the distinct, biologically hierarchical components of IPM, and instead aggregates growers' management practices into an overall adoption score. Knowledge of these distinct components and the extent to which they are implemented can inform government officials as to how they should develop targeted assistance programs to encourage broader IPM use. We address these concerns by assessing the components of IPM adoption and comparing our method to the traditional approach alone. Our results indicate that there are four distinct components of adoption-weed, insect, general, and ecosystem management-and that growers implement the first two components significantly more often than the latter two. These findings suggest that using a more nuanced measure to assess IPM adoption that expands on the traditional approach, allows for a better understanding of the degree of IPM implementation.

  19. Assessing Integrated Pest Management Adoption: Measurement Problems and Policy Implications

    Science.gov (United States)

    Puente, Molly; Darnall, Nicole; Forkner, Rebecca E.

    2011-11-01

    For more than a decade, the U.S. government has promoted integrated pest management (IPM) to advance sustainable agriculture. However, the usefulness of this practice has been questioned because of lagging implementation. There are at least two plausible rationales for the slow implementation: (1) growers are not adopting IPM—for whatever reason—and (2) current assessment methods are inadequate at assessing IPM implementation. Our research addresses the second plausibility. We suggest that the traditional approach to measuring IPM implementation on its own fails to assess the distinct, biologically hierarchical components of IPM, and instead aggregates growers' management practices into an overall adoption score. Knowledge of these distinct components and the extent to which they are implemented can inform government officials as to how they should develop targeted assistance programs to encourage broader IPM use. We address these concerns by assessing the components of IPM adoption and comparing our method to the traditional approach alone. Our results indicate that there are four distinct components of adoption—weed, insect, general, and ecosystem management—and that growers implement the first two components significantly more often than the latter two. These findings suggest that using a more nuanced measure to assess IPM adoption that expands on the traditional approach, allows for a better understanding of the degree of IPM implementation.

  20. An integrated approach to combating flow assurance problems

    Energy Technology Data Exchange (ETDEWEB)

    Abney, Laurence; Browne, Alan [Halliburton, Houston, TX (United States)

    2005-07-01

    Any upset to the internal pipe surface of a pipeline can significantly impact both pipeline through-put and energy requirements for maintaining design flow rates. Inefficient flow through pipelines can have a significant negative impact on operating expense (Opex) and the energy requirements necessary to maintain pipeline through-put. Effective flow maintenance helps ensure that Opex remains within budget, processing equipment life is extended and that excessive use of energy is minimized. A number of events can result in debris generation and deposition in a pipeline. Corrosion, hydrate formation, paraffin deposition, asphaltene deposition, development of 'black powder' and scale formation are the most common sources of pipeline debris. Generally, a combination of pigging and chemical treatments is used to remove debris; these two techniques are commonly used in isolation. Incorporation of specialized fluids with enhanced solid-transport capabilities, specialized dispersants, or specialized surfactants can improve the success of routine pigging operations. An array of alternative and often complementary remediation technologies can be used to effect the removal of deposits or even full restrictions from pipelines. These include the application of acids, specialized chemical products, and intrusive interventions techniques. This paper presents a review of methods of integrating existing technologies. (author)

  1. Integrated data management and validation platform for phosphorylated tandem mass spectrometry data.

    Science.gov (United States)

    Lahesmaa-Korpinen, Anna-Maria; Carlson, Scott M; White, Forest M; Hautaniemi, Sampsa

    2010-10-01

    MS/MS is a widely used method for proteome-wide analysis of protein expression and PTMs. The thousands of MS/MS spectra produced from a single experiment pose a major challenge for downstream analysis. Standard programs, such as MASCOT, provide peptide assignments for many of the spectra, including identification of PTM sites, but these results are plagued by false-positive identifications. In phosphoproteomic experiments, only a single peptide assignment is typically available to support identification of each phosphorylation site, and hence minimizing false positives is critical. Thus, tedious manual validation is often required to increase confidence in the spectral assignments. We have developed phoMSVal, an open-source platform for managing MS/MS data and automatically validating identified phosphopeptides. We tested five classification algorithms with 17 extracted features to separate correct peptide assignments from incorrect ones using over 2600 manually curated spectra. The naïve Bayes algorithm was among the best classifiers with an AUC value of 97% and PPV of 97% for phosphotyrosine data. This classifier required only three features to achieve a 76% decrease in false positives as compared with MASCOT while retaining 97% of true positives. This algorithm was able to classify an independent phosphoserine/threonine data set with AUC value of 93% and PPV of 91%, demonstrating the applicability of this method for all types of phospho-MS/MS data. PhoMSVal is available at http://csbi.ltdk.helsinki.fi/phomsval.

  2. Integrated microfluidics platforms for investigating injury and regeneration of CNS axons.

    Science.gov (United States)

    Kim, Hyung Joon; Park, Jeong Won; Byun, Jae Hwan; Vahidi, Behrad; Rhee, Seog Woo; Jeon, Noo Li

    2012-06-01

    We describe the development of experimental platforms to quantify the regeneration of injured central nervous system (CNS) neurons by combining engineering technologies and primary neuronal cultures. Although the regeneration of CNS neurons is an important area of research, there are no currently available methods to screen for drugs. Conventional tissue culture based on Petri dish does not provide controlled microenvironment for the neurons and only provide qualitative information. In this review, we introduced the recent advances to generate in vitro model system that is capable of mimicking the niche of CNS injury and regeneration and also of testing candidate drugs. We reconstructed the microenvironment of the regeneration of CNS neurons after injury to provide as in vivo like model system where the soluble and surface bounded inhibitors for regeneration are presented in physiologically relevant manner using microfluidics and surface patterning methods. The ability to control factors and also to monitor them using live cell imaging allowed us to develop quantitative assays that can be used to compare various drug candidates and also to understand the basic mechanism behind nerve regeneration after injury.

  3. An integrated platform for large-scale data collection and precise perturbation of live Drosophila embryos

    Science.gov (United States)

    Levario, Thomas J.; Zhao, Charles; Rouse, Tel; Shvartsman, Stanislav Y.; Lu, Hang

    2016-02-01

    Understanding the fundamental principles governing embryogenesis is a key goal of developmental biology. Direct observation of embryogenesis via in vivo live imaging is vital to understanding embryogenesis; yet, tedious sample preparation makes it difficult to acquire large-scale imaging data that is often required to overcome experimental and biological noises for quantitative studies. Furthermore, it is often difficult, and sometimes impossible, to incorporate environmental perturbation for understanding developmental responses to external stimuli. To address this issue, we have developed a method for high-throughput imaging of live embryos, delivering precise environmental perturbations, and unbiased data extraction. This platform includes an optimized microfluidic device specifically for live embryos and also for precise perturbations in the microenvironment of the developing embryos. In addition, we developed software for simple, yet accurate, automated segmentation of fluorescent images, and automated data extraction. Using a quantitative assessment we find that embryos develop normally within the microfluidic device. Finally, we show an application of the high-throughput assay for monitoring developmental responses to external stimuli: anoxia-induced developmental arrest in Drosophila embryos. With slight modifications, the method developed in this work can be applied to many other models of development and other stimulus-response behaviors during development.

  4. The development of an integrated platform to identify breast cancer glycoproteome changes in human serum.

    Science.gov (United States)

    Zeng, Zhi; Hincapie, Marina; Haab, Brian B; Hanash, Samir; Pitteri, Sharon J; Kluck, Steven; Hogan, Jason M; Kennedy, Jacob; Hancock, William S

    2010-05-07

    Protein glycosylation represents one of the major post-translational modifications and can have significant effects on protein function. Moreover, changes in the carbohydrate structure are increasingly being recognized as an important modification associated with cancer etiology. In this report, we describe the development of a proteomics approach to identify breast cancer related changes in either concentration and/or the carbohydrate structures of glycoprotein(s) present in blood samples. Diseased and healthy serum samples were processed by an optimized sample preparation protocol using multiple lectin affinity chromatography (M-LAC) that partitions serum proteins based on glycan characteristics. Subsequently, three separate procedures, 1D SDS-PAGE, isoelectric focusing and an antibody microarray, were applied to identify potential candidate markers for future study. The combination of these three platforms is illustrated in this report with the analysis of control and cancer glycoproteomic fractions. Firstly, a molecular weight based separation of glycoproteins by 1D SDS-PAGE was performed, followed by protein, glycoprotein staining, lectin blotting and LC-MS analysis. To refine or confirm the list of interesting glycoproteins, isoelectric focusing (targeting sialic acid changes) and an antibody microarray (used to detect neutral glycan shifts) were selected as the orthogonal methods. As a result, several glycoproteins including alpha-1B-glycoprotein, complement C3, alpha-1-antitrypsin and transferrin were identified as potential candidates for further study.

  5. Development of a Graphical Tool to integrate the Prometheus AEOlus methodology and Jason Platform

    Directory of Open Access Journals (Sweden)

    Rafhael CUNHA

    2017-07-01

    Full Text Available Software Engineering (SE is an area that intends to build high-quality software in a systematic way. However, traditional software engineering techniques and methods do not support the demand for developing Multiagent Systems (MAS. Therefore a new subarea has been studied, called Agent Oriented Software Engineering (AOSE. The AOSE area proposes solutions to issues related to the development of agent oriented systems. There is still no standardization in this subarea, resulting in several methodologies. Another issue of this subarea is that there are very few tools that are able to automatically generate code. In this work we propose a tool to support the Prometheus AEOlus Methodology because it provides modelling artifacts to all MAS dimensions: agents, environment, interaction, and organization. The tool supports all Prometheus AEOlus artifacts and can automatically generated code to the agent and interaction dimensions in the AgentSpeak Language, which is the language used in the Jason Platform. We have done some validations with the proposed tool and a case study is presented.

  6. Enhancing creative problem solving in an integrated visual art and geometry program: A pilot study

    NARCIS (Netherlands)

    Schoevers, E.M.; Kroesbergen, E.H.

    2017-01-01

    This article describes a new pedagogical method, an integrated visual art and geometry program, which has the aim to increase primary school students' creative problem solving and geometrical ability. This paper presents the rationale for integrating visual art and geometry education. Furthermore

  7. Method for the numerical integration of equations of perturbed satellite motion in problems of space geodesy

    Science.gov (United States)

    Plakhov, Iu. V.; Mytsenko, A. V.; Shel'Pov, V. A.

    A numerical integration method is developed that is more accurate than Everhart's (1974) implicit single-sequence approach for integrating orbits. This method can be used to solve problems of space geodesy based on the use of highly precise laser observations.

  8. On the use of the line integral in the numerical treatment of conservative problems

    Science.gov (United States)

    Brugnano, Luigi; Iavernaro, Felice

    2016-06-01

    We sketch out the use of the line integral as a tool to devise numerical methods suitable for conservative and, in particular, Hamiltonian problems. The monograph [3] presents the fundamental theory on line integral methods and this short note aims at exploring some aspects and results emerging from their study.

  9. Innovative Pressure Sensor Platform and Its Integration with an End-User Application

    Directory of Open Access Journals (Sweden)

    Antonio Flores-Caballero

    2014-06-01

    Full Text Available This paper describes the fully integration of an innovative and low-cost pressure sensor sheet based on a bendable and printed electronics technology. All integration stages are covered, from most low-level functional system, like physical analog sensor data acquisition, followed by embedded data processing, to end user interactive visual application. Data acquisition embedded software and hardware was developed using a Rapid Control Prototyping (RCP. Finally, after first electronic prototype successful testing, a Taylor-made electronics was developed, reducing electronics volume to 3.5 cm × 6 cm × 2 cm with a maximum power consumption of 765 mW for both electronics and pressure sensor sheet.

  10. Simulation platform for application development on a vision-system-on-chip with integrated signal processing

    Science.gov (United States)

    Reichel, Peter; Döge, Jens; Hoppe, Christoph; Peter, Nico; Reichel, Andreas; Schneider, Peter

    2016-07-01

    Image sensors with integrated, programmable signal processing execute computationally intensive processing steps during or immediately after image acquisition, thereby allowing for reducing output data to relevant features only. In contrast to conventional image processing systems, the tasks of image acquisition and actual image processing in such a "vision chip" cannot be viewed independently of each other. Both for validating the architecture and supporting programming in the course of application development, modeling on the system level has been performed as part of the design process of the vision-system-on-chip. Apart from the implementation of all essential components of the integrated control unit as well as digital and analog signal processing, special attention has been paid to the integration into the development environment. Being able to purposefully insert parameter deviations and/or defects at different points of the analog processing enables investigations with respect to their influence on image processing algorithms performed on the image sensor. Due to its high simulation speed and compatibility to the real system, especially regarding the to-be-executed programs, the resulting simulation model is very well suited for use in application development.

  11. InP chip scale integration platform for high performance tunable lasers

    Science.gov (United States)

    Simes, Robert J.; Fish, Gregory A.; Abraham, Patrick; Akulova, Yuliya A.; Coldren, Christopher W.; Focht, Marlin; Hall, Eric M.; Larson, Mike C.; Marchand, Hugues; Kozodoy, Peter; Dahl, Anders; Koh, Ping C.; Strand, T.

    2003-12-01

    Tunable semiconductor lasers have been listed in numerous critical technology lists for future optical communication systems. Lasers with full band tuning ranges (C or L) allow reduction of the inventory cost and simplify deployment and operation of existing systems in addition to enabling wavelength agile networking concepts in future systems. Furthermore, monolithic integration of full band tunable lasers with modulators to form complete transmitters offers the most potential for reducing system size, weight, power consumption, and cost. This paper summarizes design, fabrication technology, and performance characteristics of widely tunable CW sources and transmitters based on chip scale integration of a Sampled Grating Distributed Bragg Reflector (SG DBR) laser with a Semiconductor Optical Amplifier (SOA) and Electroabsorption (EA) or Mach Zehnder (MZ) modulator. Widely tunable CW sources based on SG-DBR lasers exhibit high fiber coupled output power (20 mW CW) and side mode suppression ratio (>40 dB), low relative intensity noise (below -140 dB/Hz) and line width ( 10 dB, and error-free transmission over 350 km of standard fiber at 2.5 Gb/s across a 40 nm tuning range. Monolithic integration of widely tunable lasers with MZ modulators allow for further extension of bit rate (10 Gb/s and beyond) and transmission distances through precise control of the transient chirp of the transmitter. Systematic investigations of accelerated aging confirm that reliability of these widely-tunable transmitters is sufficient for system deployment.

  12. Tunable optical filters for in-plane integration on InP MEMS platform

    Science.gov (United States)

    Datta, M.; McGee, J.; Pruessner, M. W.; Amarnath, K.; Kanakaraju, S.; Ghodssi, R.

    2005-07-01

    We have demonstrated a planar waveguide-based tunable integrated optical filter in indium phosphide (InP) with on-chip micro-electro-mechanical (MEMS) actuation. An air-gap Fabry-Perot resonant microcavity is formed between two waveguides, whose facets have monolithically integrated high-reflectivity multilayer InP/air Distributed Bragg Reflector (DBR) mirrors. A suspended beam electrostatic microactuator attached to one of the DBR mirrors modulates the microcavity length, resulting in a tunable filter. The DBR mirrors provide a broad high-reflectivity spectrum, within which the transmission wavelength can be tuned. The in-plane configuration of the filter enables easy integration with other active and passive waveguide-based optoelectronic devices on a chip and simplifies fiber alignment. Experimental results from the first generation of tunable optical filters are presented. The microfabricated filter exhibited a resonant wavelength shift of 12nm (1513-1525nm) at a low operating voltage of 7V. A full-width-half-maximum (FWHM) of 33 nm was experimentally observed, and the quality factor was calculated to be 46. Several improvements of the MEMS actuator, waveguide, and optical cavity design for the future devices are discussed.

  13. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

    Science.gov (United States)

    Mungall, Christopher J.; McMurry, Julie A.; Köhler, Sebastian; Balhoff, James P.; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J.P.; Jacobsen, Julius O.B.; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E.; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N.; Haendel, Melissa A.

    2017-01-01

    The correlation of phenotypic outcomes with genetic variation and environmental factors is a core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient phenotypes may not match known diseases, candidate variants may be in genes that have not been characterized, model organisms may not recapitulate human or veterinary diseases, filling evolutionary gaps is difficult, and many resources must be queried to find potentially significant genotype–phenotype associations. Non-human organisms have proven instrumental in revealing biological mechanisms. Advanced informatics tools can identify phenotypically relevant disease models in research and diagnostic contexts. Large-scale integration of model organism and clinical research data can provide a breadth of knowledge not available from individual sources and can provide contextualization of data back to these sources. The Monarch Initiative (monarchinitiative.org) is a collaborative, open science effort that aims to semantically integrate genotype–phenotype data from many species and sources in order to support precision medicine, disease modeling, and mechanistic exploration. Our integrated knowledge graph, analytic tools, and web services enable diverse users to explore relationships between phenotypes and genotypes across species. PMID:27899636

  14. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.

    Science.gov (United States)

    Mungall, Christopher J; McMurry, Julie A; Köhler, Sebastian; Balhoff, James P; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J P; Jacobsen, Julius O B; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N; Haendel, Melissa A

    2017-01-04

    The correlation of phenotypic outcomes with genetic variation and environmental factors is a core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient phenotypes may not match known diseases, candidate variants may be in genes that have not been characterized, model organisms may not recapitulate human or veterinary diseases, filling evolutionary gaps is difficult, and many resources must be queried to find potentially significant genotype-phenotype associations. Non-human organisms have proven instrumental in revealing biological mechanisms. Advanced informatics tools can identify phenotypically relevant disease models in research and diagnostic contexts. Large-scale integration of model organism and clinical research data can provide a breadth of knowledge not available from individual sources and can provide contextualization of data back to these sources. The Monarch Initiative (monarchinitiative.org) is a collaborative, open science effort that aims to semantically integrate genotype-phenotype data from many species and sources in order to support precision medicine, disease modeling, and mechanistic exploration. Our integrated knowledge graph, analytic tools, and web services enable diverse users to explore relationships between phenotypes and genotypes across species.

  15. Analysis of some integrals arising in the atomic three-electron problem

    Science.gov (United States)

    King, Frederick W.

    1991-12-01

    A detailed analysis is presented for the evaluation of atomic integrals of the form Fri1rj2rk3r-223rm31r12 ne-αr1-βr2-γr3dr1 dr2 dr3, which arise in several contexts of the three-electron atomic problem. All convergent integrals with i>=-2, j>=-2, k>=-2, m>=-1, and n>=-1 are examined. These integrals are solved by two distinct procedures. A majority of the integrals can be evaluated by a reduction of the three-electron integrals to integrals arising in the atomic two-electron integral problem. A second approach allows all integrals with the aforementioned indices to be evaluated by the use of Sack's expansion [J. Math. Phys. 5, 245 (1964)] of the interelectronic separation, which leads to a reduction of the above nine-dimensional integrals to a set of three-dimensional integrals. A discussion is given for the numerical evaluation of the three-dimensional integrals that arise.

  16. Abstract Applets a Method for Integrating Numerical Problem-Solving into the Undergraduate Physics Curriculum

    CERN Document Server

    Peskin, Michael E

    2003-01-01

    In upper-division undergraduate physics courses, it is desirable to give numerical problem-solving exercises integrated naturally into weekly problem sets. I explain a method for doing this that makes use of the built-in class structure of the Java programming language. I also supply a Java class library that can assist instructors in writing programs of this type.

  17. A formal infinite dimensional Cauchy problem and its relation to integrable hierarchies

    NARCIS (Netherlands)

    Helminck, G.F.; Panasenko, E.A.; Sergeeva, A.O.; Ge, M.L.; Bai, C.; Jing, N.

    2012-01-01

    In this paper it is shown under mild assumptions that the local solvability of an infinite dimensional formal Cauchy problem is equivalent to a set of zero curvature relations. The role of this type of Cauchy problems plays in integrable systems is illustrated at the hand of lower triangular Toda hi

  18. Easily Integrable Platform for the Deployment of a Remote Laboratory for Microcontrollers

    Directory of Open Access Journals (Sweden)

    Elio San-Cristobal

    2010-08-01

    Full Text Available Remote laboratories are the natural solution in order to perform real experimentation under e-learning tools. Nevertheless these tools are the result of the research developed by the universities to cover their own needs without having in consideration the deployment of this technology by other institutions. This paper presents a hw prototype for a Remote Lab for microcontrollers that tries to solve these problems contributing new possibilities from the commercial and professional point of view.

  19. BOUNDARY INTEGRAL FORMULAS FOR ELASTIC PLANE PROBLEM OF EXTERIOR CIRCULAR DOMAIN

    Institute of Scientific and Technical Information of China (English)

    DONG Zheng-zhu; LI Shun-cai; YU De-hao

    2006-01-01

    After the stress function and the normal derivative on the boundary for the plane problem of exterior circular domain are expanded into Laurent series, comparing them with the Laurent series of the complex stress function and making use of some formulas in Fourier series and the convolutions, the boundary integral formula of the stress function is derived further. Then the stress function can be obtained directly by the integration of the stress function and its normal derivative on the boundary. Some examples are given. It shows that the boundary integral formula of the stress function is convenient to be used for solving the elastic plane problem of exterior circular domain.

  20. Numerical solution of optimal control problems using multiple-interval integral Gegenbauer pseudospectral methods

    Science.gov (United States)

    Tang, Xiaojun

    2016-04-01

    The main purpose of this work is to provide multiple-interval integral Gegenbauer pseudospectral methods for solving optimal control problems. The latest developed single-interval integral Gauss/(flipped Radau) pseudospectral methods can be viewed as special cases of the proposed methods. We present an exact and efficient approach to compute the mesh pseudospectral integration matrices for the Gegenbauer-Gauss and flipped Gegenbauer-Gauss-Radau points. Numerical results on benchmark optimal control problems confirm the ability of the proposed methods to obtain highly accurate solutions.

  1. High Speed Solution of Spacecraft Trajectory Problems Using Taylor Series Integration

    Science.gov (United States)

    Scott, James R.; Martini, Michael C.

    2008-01-01

    Taylor series integration is implemented in a spacecraft trajectory analysis code-the Spacecraft N-body Analysis Program (SNAP) - and compared with the code s existing eighth-order Runge-Kutta Fehlberg time integration scheme. Nine trajectory problems, including near Earth, lunar, Mars and Europa missions, are analyzed. Head-to-head comparison at five different error tolerances shows that, on average, Taylor series is faster than Runge-Kutta Fehlberg by a factor of 15.8. Results further show that Taylor series has superior convergence properties. Taylor series integration proves that it can provide rapid, highly accurate solutions to spacecraft trajectory problems.

  2. Integral transform methodology for convection-diffusion problems in petroleum reservoir engineering

    Energy Technology Data Exchange (ETDEWEB)

    Almeida, A.R. [PETROBRAS, Rio de Janeiro, RJ (Brazil); Cotta, R.M. [Universidade Federal, Rio de Janeiro, RJ (Brazil)

    1995-12-01

    The convection-diffusion equation is present in the formulation of many petroleum reservoir engineering problems. A representative example, the tracer injection problem, is solved analytically here, through the generalised integral transform technique so as to illustrate the usefulness of this approach, for this class of problems. Classical assumptions, such as steady-state single phase flow and unit mobility ratio, are adopted. Comparisons with alternative analytical (when available) or numerical (finite difference) solutions are performed and benchmark results are established. (author)

  3. Numerical solution of multiple hole problem by using boundary integral equation

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    This paper studies a numerical solution of multiple hole problem by using a boundary integral equation.The studied problem can be considered as a supposition of many single hole problems.After considering the interaction among holes,an algebraic equation is formulated,which is then solved by using an iteration technique.The hoop stress around holes can be finally determined. One numerical example is provided to check its accuracy.

  4. An integrated approach for modeling and solving the scheduling problem of container handling systems

    Institute of Scientific and Technical Information of China (English)

    CHEN Lu; XI Li-feng; CAI Jian-guo; BOSTEL Nathalie; DEJAX Pierre

    2006-01-01

    An integrated model is presented to schedule the container handling system. The objective is to improve the cooperation between different types of equipments, and to increase the productivity of the terminal. The problem is formulated as a Hybrid Flow Shop Scheduling problem with precedence constraint, setup times and blocking (HFSS-B). A tabu search algorithm is proposed to solve this problem. The quality and efficiency of the proposed algorithm is analyzed from the computational point of view.

  5. Integrated programmable photonic filter on the silicon-on-insulator platform.

    Science.gov (United States)

    Liao, Shasha; Ding, Yunhong; Peucheret, Christophe; Yang, Ting; Dong, Jianji; Zhang, Xinliang

    2014-12-29

    We propose and demonstrate a silicon-on-insulator (SOI) on-chip programmable filter based on a four-tap finite impulse response structure. The photonic filter is programmable thanks to amplitude and phase modulation of each tap controlled by thermal heaters. We further demonstrate the tunability of the filter central wavelength, bandwidth and variable passband shape. The tuning range of the central wavelength is at least 42% of the free spectral range. The bandwidth tuning range is at least half of the free spectral range. Our scheme has distinct advantages of compactness, capability for integrating with electronics.

  6. Two-dimensional hydrodynamic flow focusing in a microfluidic platform featuring a monolithic integrated glass micronozzle

    Science.gov (United States)

    Liu, Yifan; Shen, Yusheng; Duan, Lian; Yobas, Levent

    2016-10-01

    Two-dimensional hydrodynamic flow focusing is demonstrated through a microfluidic device featuring a monolithic integrated glass micronozzle inside a flow-focusing geometry. Such a coaxial configuration allows simple one-step focusing of a sample fluid stream, jetted from the micronozzle tip, in both in-plane and out-of-plane directions. The width of the focused filament can be precisely controlled and further scaled down to the submicrometer regime to facilitate rapid hydrodynamic mixing. Fluorescence quenching experiments reveal ultra-fast microsecond mixing of the denaturant into the focused filament. This device offers new possibilities to a set of applications such as the study of protein folding kinetics.

  7. Integrated Monitoring Technology of Dynamic Positioning in Semi-submersible Drilling Platform%半潜式钻井平台动力定位集成监控技术

    Institute of Scientific and Technical Information of China (English)

    高文; 陈红卫

    2011-01-01

    针对目前海洋钻井信息管理平台中集成能力、可操作性和可扩展性存在的问题,研究了半潜式钻井平台动力定位集成监控技术;介绍了钻井平台动力定位系统组成和信息集成技术;设计了监控系统网络结构和软件结构;应用OPC技术设计客户端解决了网络异构问题,实现了钻井平台动力定位集成监控;最后利用PLC模拟了吊舱和柴油发电机数据环境,对OPC客户端进行了测试;测试结果表明,客户端能够与不同服务器建立连接,实现对不同系统、设备数据的读写.%Specifically for solving the problems of offshore drilling information management platform such as integrated ability, operabili-ty and extensibility, the integrated monitoring technology of dynamic positioning in semi -submersible drilling platform is studied. Not only integrated technology and dynamic positioning system are introduced, but also network architecture and software architecture are designed. Designing client based on OPC technology solves the problem of heterogeneous networks to achieve integrated monitoring for dynamic positioning system of Semi - submersible drilling platform. Finally using PLC simulates data environment of pod and diesel generator to test client. The results show that the client can connect with different servers and exchange data with different systems and equipments.

  8. Bridging the gap between PAT concepts and implementation: An integrated software platform for fermentation.

    Science.gov (United States)

    Chopda, Viki R; Gomes, James; Rathore, Anurag S

    2016-01-01

    Bioreactor control significantly impacts both the amount and quality of the product being manufactured. The complexity of the control strategy that is implemented increases with reactor size, which may vary from thousands to tens of thousands of litres in commercial manufacturing. The Process Analytical Technology (PAT) initiative has highlighted the need for having robust monitoring tools and effective control schemes that are capable of taking real time information about the critical quality attributes (CQA) and the critical process parameters (CPP) and executing immediate response as soon as a deviation occurs. However, the limited flexibility that present commercial software packages offer creates a hurdle. Visual programming environments have gradually emerged as potential alternatives to the available text based languages. This paper showcases development of an integrated programme using a visual programming environment for a Sartorius BIOSTAT® B Plus 5L bioreactor through which various peripheral devices are interfaced. The proposed programme facilitates real-time access to data and allows for execution of control actions to follow the desired trajectory. Major benefits of such integrated software system include: (i) improved real time monitoring and control; (ii) reduced variability; (iii) improved performance; (iv) reduced operator-training time; (v) enhanced knowledge management; and (vi) easier PAT implementation.

  9. Construction and Research on Construction of Jiangx Security Operation Integrated Provincial Local Taxation Information Systems Management Platform%江西地税安全运维管理平台的建设研究

    Institute of Scientific and Technical Information of China (English)

    周文星

    2012-01-01

    this article has mainly analyzed JiangXi Provincial Local Taxation information management problems that exist in Network security,and introduced Research and Practice on construction of Jiangxi Provincial Local Taxation Information Systems Security Operation Integrated Management Platform%文章主要分析了江西地税网络安全管理过程中存在的问题,就这些问题介绍了江西地税安全运维管理平台建设过程中的研究和实践。

  10. The Riesz-Radon-Fréchet problem of characterization of integrals

    Science.gov (United States)

    Zakharov, Valerii K.; Mikhalev, Aleksandr V.; Rodionov, Timofey V.

    2010-11-01

    This paper is a survey of results on characterizing integrals as linear functionals. It starts from the familiar result of F. Riesz (1909) on integral representation of bounded linear functionals by Riemann-Stieltjes integrals on a closed interval, and is directly connected with Radon's famous theorem (1913) on integral representation of bounded linear functionals by Lebesgue integrals on a compact subset of {R}^n. After the works of Radon, Fréchet, and Hausdorff, the problem of characterizing integrals as linear functionals took the particular form of the problem of extending Radon's theorem from {R}^n to more general topological spaces with Radon measures. This problem turned out to be difficult, and its solution has a long and rich history. Therefore, it is natural to call it the Riesz-Radon-Fréchet problem of characterization of integrals. Important stages of its solution are associated with such eminent mathematicians as Banach (1937-1938), Saks (1937-1938), Kakutani (1941), Halmos (1950), Hewitt (1952), Edwards (1953), Prokhorov (1956), Bourbaki (1969), and others. Essential ideas and technical tools were developed by A.D. Alexandrov (1940-1943), Stone (1948-1949), Fremlin (1974), and others. Most of this paper is devoted to the contemporary stage of the solution of the problem, connected with papers of König (1995-2008), Zakharov and Mikhalev (1997-2009), and others. The general solution of the problem is presented in the form of a parametric theorem on characterization of integrals which directly implies the characterization theorems of the indicated authors. Bibliography: 60 titles.

  11. PopHR: a knowledge-based platform to support integration, analysis, and visualization of population health data.

    Science.gov (United States)

    Shaban-Nejad, Arash; Lavigne, Maxime; Okhmatovskaia, Anya; Buckeridge, David L

    2017-01-01

    Population health decision makers must consider complex relationships between multiple concepts measured with differential accuracy from heterogeneous data sources. Population health information systems are currently limited in their ability to integrate data and present a coherent portrait of population health. Consequentially, these systems can provide only basic support for decision makers. The Population Health Record (PopHR) is a semantic web application that automates the integration and extraction of massive amounts of heterogeneous data from multiple distributed sources (e.g., administrative data, clinical records, and survey responses) to support the measurement and monitoring of population health and health system performance for a defined population. The design of the PopHR draws on the theories of the determinants of health and evidence-based public health to harmonize and explicitly link information about a population with evidence about the epidemiology and control of chronic diseases. Organizing information in this manner and linking it explicitly to evidence is expected to improve decision making related to the planning, implementation, and evaluation of population health and health system interventions. In this paper, we describe the PopHR platform and discuss the architecture, design, key modules, and its implementation and use. © 2016 New York Academy of Sciences.

  12. Functional integrity of flexible n-channel metal-oxide-semiconductor field-effect transistors on a reversibly bistable platform

    Science.gov (United States)

    Alfaraj, Nasir; Hussain, Aftab M.; Torres Sevilla, Galo A.; Ghoneim, Mohamed T.; Rojas, Jhonathan P.; Aljedaani, Abdulrahman B.; Hussain, Muhammad M.

    2015-10-01

    Flexibility can bring a new dimension to state-of-the-art electronics, such as rollable displays and integrated circuit systems being transformed into more powerful resources. Flexible electronics are typically hosted on polymeric substrates. Such substrates can be bent and rolled up, but cannot be independently fixed at the rigid perpendicular position necessary to realize rollable display-integrated gadgets and electronics. A reversibly bistable material can assume two stable states in a reversible way: flexibly rolled state and independently unbent state. Such materials are used in cycling and biking safety wristbands and a variety of ankle bracelets for orthopedic healthcare. They are often wrapped around an object with high impulsive force loading. Here, we study the effects of cumulative impulsive force loading on thinned (25 μm) flexible silicon-based n-channel metal-oxide-semiconductor field-effect transistor devices housed on a reversibly bistable flexible platform. We found that the transistors have maintained their high performance level up to an accumulated 180 kN of impact force loading. The gate dielectric layers have maintained their reliability, which is evidenced by the low leakage current densities. Also, we observed low variation in the effective electron mobility values, which manifests that the device channels have maintained their carrier transport properties.

  13. Integrated reconfigurable multiple-input–multiple-output antenna system with an ultra-wideband sensing antenna for cognitive radio platforms

    KAUST Repository

    Hussain, Rifaqat

    2015-06-18

    © The Institution of Engineering and Technology 2015. A compact, novel multi-mode, multi-band frequency reconfigurable multiple-input-multiple-output (MIMO) antenna system, integrated with ultra-wideband (UWB) sensing antenna, is presented. The developed model can be used as a complete antenna platform for cognitive radio applications. The antenna system is developed on a single substrate area of dimensions 65 × 120 mm2. The proposed sensing antenna is used to cover a wide range of frequency bands from 710 to 3600 MHz. The frequency reconfigurable dual-element MIMO antenna is integrated with P-type, intrinsic, N-type (PIN) diodes for frequency agility. Different modes of selection are used for the MIMO antenna system reconfigurability to support different wireless system standards. The proposed MIMO antenna configuration is used to cover various frequency bands from 755 to 3450 MHz. The complete system comprising the multi-band reconfigurable MIMO antennas and UWB sensing antenna for cognitive radio applications is proposed with a compact form factor.

  14. Functional integrity of flexible n-channel metal–oxide–semiconductor field-effect transistors on a reversibly bistable platform

    KAUST Repository

    Alfaraj, Nasir

    2015-10-26

    Flexibility can bring a new dimension to state-of-the-art electronics, such as rollable displays and integrated circuit systems being transformed into more powerful resources. Flexible electronics are typically hosted on polymeric substrates. Such substrates can be bent and rolled up, but cannot be independently fixed at the rigid perpendicular position necessary to realize rollable display-integrated gadgets and electronics. A reversibly bistable material can assume two stable states in a reversible way: flexibly rolled state and independently unbent state. Such materials are used in cycling and biking safety wristbands and a variety of ankle bracelets for orthopedic healthcare. They are often wrapped around an object with high impulsive force loading. Here, we study the effects of cumulative impulsive force loading on thinned (25 μm) flexible silicon-based n-channel metal–oxide–semiconductor field-effect transistor devices housed on a reversibly bistable flexible platform. We found that the transistors have maintained their high performance level up to an accumulated 180 kN of impact force loading. The gate dielectric layers have maintained their reliability, which is evidenced by the low leakage current densities. Also, we observed low variation in the effective electron mobility values, which manifests that the device channels have maintained their carrier transport properties.

  15. AN ACCURATE ORBITAL INTEGRATOR FOR THE RESTRICTED THREE-BODY PROBLEM AS A SPECIAL CASE OF THE DISCRETE-TIME GENERAL THREE-BODY PROBLEM

    Energy Technology Data Exchange (ETDEWEB)

    Minesaki, Yukitaka [Tokushima Bunri University, Nishihama, Yamashiro-cho, Tokushima 770-8514 (Japan)

    2013-08-01

    For the restricted three-body problem, we propose an accurate orbital integration scheme that retains all conserved quantities of the two-body problem with two primaries and approximately preserves the Jacobi integral. The scheme is obtained by taking the limit as mass approaches zero in the discrete-time general three-body problem. For a long time interval, the proposed scheme precisely reproduces various periodic orbits that cannot be accurately computed by other generic integrators.

  16. Design of Integrated Automation System Platform of Coal Mine Based on Wonderware IAS and Its Application%基于Wonderware IAS的煤矿综合自动化系统平台的设计和应用

    Institute of Scientific and Technical Information of China (English)

    顾对芳; 王为广; 李红霞; 丁继存

    2012-01-01

    根据济宁三号煤矿的实际情况,提出了一种基于Wonderware IAS的煤矿综合自动化系统平台设计方案,介绍了该平台的结构、IAS的开发、与煤矿其他子系统接口协议的通信方法、基于InTouch组态软件的HMI的设计方法等.实际应用表明,该平台运行稳定,有效提高了煤矿的信息化程度,解决了以往各系统各自运行、各自管理的弊端,达到了减员增效的目的.%According to actual situation of Jining No. 3 Coal Mine, a design scheme of integrated automation system platform of coal mine based on Wonderware IAS was proposed. Platform structure, IAS development, communication between the platform and interface protocol of other subsystem, HMI design method based on InTouch configuration software were introduced. The practical application showed that the platform is stable in operation, and improves coal mine informatization degree effectively, solves problems of self running and self management, which achieves goal of increasing efficiency by downsizing staff.

  17. Research and Design on Information Service and Management Platform based on Work Integrated Learning Mode

    Directory of Open Access Journals (Sweden)

    Gao Qi Yuan

    2016-01-01

    Full Text Available The work integrated learning mode is the world’s more advanced kind of teaching mode, which in many countries have achieved success, but also the rapid development in China. This paper is conscientiously sum of basic school vocational college engineering student management, aimed at the exchange of services and management schools as well as schools, businesses, students communicate among emerging issues were discussed ,proposed information technology services and management, consciously to promote student learning through the application, to improve learning efficiency, can strong the service awareness of schools, businesses for the students , promote school students and the school’s teaching, management form a whole, to facilitate the strengthening of students management and strengthen the contact of schools, businesses, students.

  18. SYSTEM FOR TORQUE CONVERTER DESIGN AND ANALYSIS BASED ON CAD/CFD INTEGRATED PLATFORM

    Institute of Scientific and Technical Information of China (English)

    WU Guangqiang; YAN Peng

    2008-01-01

    A 3D torque converter design system is developed based on numerical investigation into flow field and CAD technology. The 3D steady-state flow field simulation is undertaken by using time averaged Reynolds equation and k-epsilon turbulence model, with mixing-plane boundary conditions at three section interfaces. The blades are designed according to the flow field characteristics by using a reverse design method in the system. The accurateness of numerical analysis and the validity of design system are verified by the fluid field experiment of desingn example of the torque converter. This kind of design and analysis system for torque converter based on integration of comput ationol fluid dynamics (CFD) and CAD is a powerful tool for torque converter manufacturing, but also a prettg important significance for research and development.

  19. Large-scale integrated super-computing platform for next generation virtual drug discovery.

    Science.gov (United States)

    Mitchell, Wayne; Matsumoto, Shunji

    2011-08-01

    Traditional drug discovery starts by experimentally screening chemical libraries to find hit compounds that bind to protein targets, modulating their activity. Subsequent rounds of iterative chemical derivitization and rescreening are conducted to enhance the potency, selectivity, and pharmacological properties of hit compounds. Although computational docking of ligands to targets has been used to augment the empirical discovery process, its historical effectiveness has been limited because of the poor correlation of ligand dock scores and experimentally determined binding constants. Recent progress in super-computing, coupled to theoretical insights, allows the calculation of the Gibbs free energy, and therefore accurate binding constants, for usually large ligand-receptor systems. This advance extends the potential of virtual drug discovery. A specific embodiment of the technology, integrating de novo, abstract fragment based drug design, sophisticated molecular simulation, and the ability to calculate thermodynamic binding constants with unprecedented accuracy, are discussed. Copyright © 2011 Elsevier Ltd. All rights reserved.

  20. Discussion on Manufacturing and Services Integration Based on E-Commerce Platform

    Directory of Open Access Journals (Sweden)

    Li Jinfa

    2017-01-01

    Full Text Available The integration of manufacturing and services is the key to adapt to the inevitable requirement of the revolution of the development of a new round of mobile Internet industry. They are also the key and trend of the next period to enhance the quality and efficiency of Chinese’s manufacturing industry to release potential services development fully, and cultivate new economic growth point.Meanwhile it makes it more effective than before.The enterprises can publicize their own values as well as collect and deal with consumer feedback of the product experience more effectively.And then,it can grasp the market trends and adapt to developping world more quickly.

  1. A purge and trap integrated microGC platform for chemical identification in aqueous samples.

    Science.gov (United States)

    Akbar, Muhammad; Narayanan, Shree; Restaino, Michael; Agah, Masoud

    2014-07-07

    The majority of current micro-scale gas chromatography (μGC) systems focus on air sampling to detect volatile organic compounds (VOCs). However, purging the VOCs from a water sample using microsystems is an unchartered territory. Various organic compounds used in everyday life find their way to water bodies. Some of these water organic compounds (WOCs) persist or degrade slowly, threatening not just human existence but also aquatic life. This article reports the first micro-purge extractor (μPE) chip and its integration with a micro-scale gas chromatography (μGC) system for the extraction and analysis of water organic compounds (WOCs) from aqueous samples. The 2 cm × 3 cm μPE chip contains two inlet and outlet ports and an etched cavity sealed with a Pyrex cover. The aqueous sample is introduced from the top inlet port while a pure inert gas is supplied from the side inlet to purge WOCs from the μPE chip. The outlets are assigned for draining water from the chip and for directing purged WOCs to the micro-thermal preconcentrator (μTPC). The trapped compounds are desorbed from the μTPC by resistive heating using the on-chip heater and temperature sensor, are separated by a 2 m long, 80 μm wide, and 250 μm deep polydimethylsiloxane (OV-1) coated μGC separation column, and are identified using a micro-thermal conductivity detector (μTCD) monolithically integrated with the column. Our experiments indicate that the combined system is capable of providing rapid chromatographic separation (<1.5 min) for quaternary WOCs namely toluene, tetrachloroethylene (PCE), chlorobenzene and ethylbenzene with a minimum detection concentration of 500 parts-per-billion (ppb) in aqueous samples. The proposed method is a promising development towards the future realization of a miniaturized system for sensitive, on-site and real-time field analysis of organic contaminants in water.

  2. Open Access Integrated Therapeutic and Diagnostic Platforms for Personalized Cardiovascular Medicine

    Directory of Open Access Journals (Sweden)

    Todd T. Schlegel

    2013-08-01

    Full Text Available It is undeniable that the increasing costs in healthcare are a concern. Although technological advancements have been made in healthcare systems, the return on investment made by governments and payers has been poor. The current model of care is unsustainable and is due for an upgrade. In developed nations, a law of diminishing returns has been noted in population health standards, whilst in the developing world, westernized chronic illnesses, such as diabetes and cardiovascular disease have become emerging problems. The reasons for these trends are complex, multifactorial and not easily reversed. Personalized medicine has the potential to have a significant impact on these issues, but for it to be truly successful, interdisciplinary mass collaboration is required. We propose here a vision for open-access advanced analytics for personalized cardiac diagnostics using imaging, electrocardiography and genomics.

  3. Event-triggered logical flow control for comprehensive process integration of multi-step assays on centrifugal microfluidic platforms.

    Science.gov (United States)

    Kinahan, David J; Kearney, Sinéad M; Dimov, Nikolay; Glynn, Macdara T; Ducrée, Jens

    2014-07-01

    The centrifugal "lab-on-a-disc" concept has proven to have great potential for process integration of bioanalytical assays, in particular where ease-of-use, ruggedness, portability, fast turn-around time and cost efficiency are of paramount importance. Yet, as all liquids residing on the disc are exposed to the same centrifugal field, an inherent challenge of these systems remains the automation of multi-step, multi-liquid sample processing and subsequent detection. In order to orchestrate the underlying bioanalytical protocols, an ample palette of rotationally and externally actuated valving schemes has been developed. While excelling with the level of flow control, externally actuated valves require interaction with peripheral instrumentation, thus compromising the conceptual simplicity of the centrifugal platform. In turn, for rotationally controlled schemes, such as common capillary burst valves, typical manufacturing tolerances tend to limit the number of consecutive laboratory unit operations (LUOs) that can be automated on a single disc. In this paper, a major advancement on recently established dissolvable film (DF) valving is presented; for the very first time, a liquid handling sequence can be controlled in response to completion of preceding liquid transfer event, i.e. completely independent of external stimulus or changes in speed of disc rotation. The basic, event-triggered valve configuration is further adapted to leverage conditional, large-scale process integration. First, we demonstrate a fluidic network on a disc encompassing 10 discrete valving steps including logical relationships such as an AND-conditional as well as serial and parallel flow control. Then we present a disc which is capable of implementing common laboratory unit operations such as metering and selective routing of flows. Finally, as a pilot study, these functions are integrated on a single disc to automate a common, multi-step lab protocol for the extraction of total RNA from

  4. [Ethical problems experienced by nurses in primary health care: integrative literature review].

    Science.gov (United States)

    Nora, Carlise Rigon Dalla; Zoboli, Elma Lourdes Campos Pavone; Vieira, Margarida

    2015-03-01

    The aim of this study is to identify ethical problems experienced by nurses in primary health care and resources for coping based on publications on the subject. An integrative literature review was performed between the months of October and November 2013, using the databases: BDTD, CINAHL, LILACS, MEDLINE, Biblioteca Cochrane, PubMed, RCAAP and SciELO. Articles, dissertations and theses published in Portuguese, English and Spanish were included, totalling 31 studies published from 1992 to 2013. This analysis resulted in four categories: ethical problems in the relationship between team members, ethical problems in the relationship with the user, ethical problems in health services management and resources for coping with ethical problems. Results showed that nurses need to be prepared to face ethical problems, emphasizing the importance of ethics education during the education process before and during professional practice to enhance the development of ethical sensitivity and competence for problem resolution.

  5. Model Integrated Problem Solving Based Learning pada Perkuliahan Dasar-dasar Kimia Analitik

    Directory of Open Access Journals (Sweden)

    Indarini Dwi Pursitasari

    2013-07-01

    Full Text Available Abstract: Integrated Problem Solving Based Learning Model on Foundation of Analytical Chemistry. This study was conducted to know the effects of Integrated Problem Solving Based Learning (IPSBL model on problem solving skills and cognitive ability of pre-service teachers. The subjects of the study were 41 pre- service teachers, 21 in the experimental group and 20 in the control group. The data were collected through a test on problem solving skills, a test on cognitive ability, and a questionnaire on the students’opinions on the use of IPSBL model. The quantitative data were analyzed using t-test and one-way ANOVA, and the qualitative data were analyzed by counting the percentage. The results of the study show that the implementation of IPSBL model increased the problem solving skills and cognitive ability of the pre-service teachers . The model was also responded positively by the research subjects. Abstrak: Model Integrated Problem Solving Based learning pada Perkuliahan Dasar-dasar Kimia Analitik. Penelitian ini bertujuan menentukan pengaruh model Integrated Problem Solving Based Learning(IPSBL terhadap peningkatan kemampuan problem solving dan kemampuan kognitif mahasiswa calon guru. Subjek penelitian terdiri dari 21 mahasiswa kelas eksperimen dan 20 mahasiswa kelas kontrol. Data dikumpulkan menggunakan tes kemampuan problem solving, tes kemampuan kognitif, dan angket untuk menjaring pendapat mahasiswa terhadap penggunaan model IPSBL . Data kuantitatif dianalisis denga n uji- t dan Anava dengan bantuan program SPSS 16.0. Data kualitatif dihitung persentasenya. Hasil penelitian menunjukkan bahwa model IPSBL dapat meningkatkan kemampuan problem solving dan kemampuan kognitif serta mendapat tanggapan yang positif dari mahasiswa.

  6. REAL TIME INTEGRATION OF FIELD DATA INTO A GIS PLATFORM FOR THE MANAGEMENT OF HYDROLOGICAL EMERGENCIES

    Directory of Open Access Journals (Sweden)

    M. Mangiameli

    2014-01-01

    Full Text Available A wide series of events requires immediate availability of information and field data to be provided to decision-makers. An example is the necessity of quickly transferring the information acquired from monitoring and alerting sensors or the data of the reconnaissance of damage after a disastrous event to an Emergency Operations Center. To this purpose, we developed an integrated GIS and WebGIS system to dynamically create and populate via Web a database with spatial features. In particular, this work concerns the gathering and transmission of spatial data and related information to the desktop GIS so that they can be displayed and analyzed in real time to characterize the operational scenario and to decide the rescue interventions. As basic software, we used only free and open source: QuantumGIS and Grass as Desktop GIS, Map Server with PMapper application for the Web-Gis functionality and PostGreSQL/PostGIS as Data Base Management System (DBMS. The approach has been designed, developed and successfully tested in the management of GIS-based navigation of an autonomous robot, both to map its trajectories and to assign optimal paths. This paper presents the application of our system to a simulated hydrological event that could interest the province of Catania, in Sicily. In particular, assuming that more teams draw up an inventory of the damage, we highlight the benefits of real-time transmission of the information collected from the field to headquarters.

  7. Miniaturized devices towards an integrated lab-on-a-chip platform for DNA diagnostics

    Science.gov (United States)

    Kaprou, G.; Papadakis, G.; Kokkoris, G.; Papadopoulos, V.; Kefala, I.; Papageorgiou, D.; Gizeli, E.; Tserepi, A.

    2015-06-01

    Microfluidics is an emerging technology enabling the development of Lab-on-a-chip (LOC) systems for clinical diagnostics, drug discovery and screening, food safety and environmental analysis. LOC systems integrate and scale down one or several laboratory functions on a single chip of a few mm2 to cm2 in size, and account for many advantages on biochemical analyses, such as low sample and reagent consumption, low cost, reduced analysis time, portability and point-of-need compatibility. Currently, available nucleic acid diagnostic tests take advantage of Polymerase Chain Reaction (PCR) that allows exponential amplification of portions of nucleic acid sequences that can be used as indicators for the identification of various diseases. Here, we present a comparison between static chamber and continuous flow miniaturized PCR devices, in terms of energy consumption for devices fabricated on the same material stack, with identical sample volume and channel dimensions. The comparison is implemented by a computational study coupling heat transfer in both solid and fluid, mass conservation of species, and joule heating. Based on the conclusions of this study, we develop low-cost and fast DNA amplification devices for both PCR and isothermal amplification, and we implement them in the detection of mutations related to breast cancer. The devices are fabricated by mass production amenable technologies on printed circuit board (PCB) substrates, where copper facilitates the incorporation of on-chip microheaters, defining the thermal zones necessary for PCR or isothermal amplification methods.

  8. Genomic DNA extraction from cells by electroporation on an integrated microfluidic platform.

    Science.gov (United States)

    Geng, Tao; Bao, Ning; Sriranganathanw, Nammalwar; Li, Liwu; Lu, Chang

    2012-11-06

    The vast majority of genetic analysis of cells involves chemical lysis for release of DNA molecules. However, chemical reagents required in the lysis interfere with downstream molecular biology and often require removal after the step. Electrical lysis based on irreversible electroporation is a promising technique to prepare samples for genetic analysis due to its purely physical nature, fast speed, and simple operation. However, there has been no experimental confirmation on whether electrical lysis extracts genomic DNA from cells in a reproducible and efficient fashion in comparison to chemical lysis, especially for eukaryotic cells that have most of the DNA enclosed in the nucleus. In this work, we construct an integrated microfluidic chip that physically traps a low number of cells, lyses the cells using electrical pulses rapidly, then purifies and concentrates genomic DNA. We demonstrate that electrical lysis offers high efficiency for DNA extraction from both eukaryotic cells (up to ∼36% for Chinese hamster ovary cells) and bacterial cells (up to ∼45% for Salmonella typhimurium) that is comparable to the widely used chemical lysis. The DNA extraction efficiency has dependence on both the electric parameters and relative amount of beads used for DNA adsorption. We envision that electroporation-based DNA extraction will find use in ultrasensitive assays that benefit from minimal dilution and simple procedures.

  9. BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.

    Science.gov (United States)

    King, Zachary A; Lu, Justin; Dräger, Andreas; Miller, Philip; Federowicz, Stephen; Lerman, Joshua A; Ebrahim, Ali; Palsson, Bernhard O; Lewis, Nathan E

    2016-01-01

    Genome-scale metabolic models are mathematically-structured knowledge bases that can be used to predict metabolic pathway usage and growth phenotypes. Furthermore, they can generate and test hypotheses when integrated with experimental data. To maximize the value of these models, centralized repositories of high-quality models must be established, models must adhere to established standards and model components must be linked to relevant databases. Tools for model visualization further enhance their utility. To meet these needs, we present BiGG Models (http://bigg.ucsd.edu), a completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG Models contains more than 75 high-quality, manually-curated genome-scale metabolic models. On the website, users can browse, search and visualize models. BiGG Models connects genome-scale models to genome annotations and external databases. Reaction and metabolite identifiers have been standardized across models to conform to community standards and enable rapid comparison across models. Furthermore, BiGG Models provides a comprehensive application programming interface for accessing BiGG Models with modeling and analysis tools. As a resource for highly curated, standardized and accessible models of metabolism, BiGG Models will facilitate diverse systems biology studies and support knowledge-based analysis of diverse experimental data.

  10. Human Disease Insight: An integrated knowledge-based platform for disease-gene-drug information.

    Science.gov (United States)

    Tasleem, Munazzah; Ishrat, Romana; Islam, Asimul; Ahmad, Faizan; Hassan, Md Imtaiyaz

    2016-01-01

    The scope of the Human Disease Insight (HDI) database is not limited to researchers or physicians as it also provides basic information to non-professionals and creates disease awareness, thereby reducing the chances of patient suffering due to ignorance. HDI is a knowledge-based resource providing information on human diseases to both scientists and the general public. Here, our mission is to provide a comprehensive human disease database containing most of the available useful information, with extensive cross-referencing. HDI is a knowledge management system that acts as a central hub to access information about human diseases and associated drugs and genes. In addition, HDI contains well-classified bioinformatics tools with helpful descriptions. These integrated bioinformatics tools enable researchers to annotate disease-specific genes and perform protein analysis, search for biomarkers and identify potential vaccine candidates. Eventually, these tools will facilitate the analysis of disease-associated data. The HDI provides two types of search capabilities and includes provisions for downloading, uploading and searching disease/gene/drug-related information. The logistical design of the HDI allows for regular updating. The database is designed to work best with Mozilla Firefox and Google Chrome and is freely accessible at http://humandiseaseinsight.com.

  11. An integrated approach for gas dispersion, gas explosion and structural impact analysis for an offshore production platform on the Dutch continental shelf

    NARCIS (Netherlands)

    Korndörffer, W.; Schaap, D.; Heijden, A.M.A. van der; Versloot, N.H.A.

    2004-01-01

    The design of an offshore gas production platform has been subjected to an extensive quantitative risk analysis in particular with regard to its resistance to gas explosions loads. It was demonstrated that integration of the physical and structural effects of a gas explosion in an early stage of the

  12. Development of an Integrated Process, Modeling and Simulation Platform for Performance-Based Design of Low-Energy and High IEQ Buildings

    Science.gov (United States)

    Chen, Yixing

    2013-01-01

    The objective of this study was to develop a "Virtual Design Studio (VDS)": a software platform for integrated, coordinated and optimized design of green building systems with low energy consumption, high indoor environmental quality (IEQ), and high level of sustainability. The VDS is intended to assist collaborating architects,…

  13. Microfabricated infuse-withdraw micropump component for an integrated inner-ear drug-delivery platform.

    Science.gov (United States)

    Tandon, Vishal; Kang, Woo Seok; Spencer, Abigail J; Kim, Ernest S; Pararas, Erin E L; McKenna, Michael J; Kujawa, Sharon G; Mescher, Mark J; Fiering, Jason; Sewell, William F; Borenstein, Jeffrey T

    2015-04-01

    One of the major challenges in treatment of auditory disorders is that many therapeutic compounds are toxic when delivered systemically. Local intracochlear delivery methods are becoming critical in emerging treatments and in drug discovery. Direct infusion via cochleostomy, in particular, is attractive from a pharmacokinetics standpoint, as there is potential for the kinetics of delivery to be well-controlled. Direct infusion is compatible with a large number of drug types, including large, complex molecules such as proteins and unstable molecules such as siRNA. In addition, hair-cell regeneration therapy will likely require long-term delivery of a timed series of agents. This presents unknown risks associated with increasing the volume of fluid within the cochlea and mechanical damage caused during delivery. There are three key requirements for an intracochlear drug delivery system: (1) a high degree of miniaturization (2) a method for pumping precise and small volumes of fluid into the cochlea in a highly controlled manner, and (3) a method for removing excess fluid from the limited cochlear fluid space. To that end, our group is developing a head-mounted microfluidics-based system for long-term intracochlear drug delivery. We utilize guinea pig animal models for development and demonstration of the device. Central to the system is an infuse-withdraw micropump component that, unlike previous micropump-based systems, has fully integrated drug and fluid storage compartments. Here we characterize the infuse-withdraw capabilities of our micropump, and show experimental results that demonstrate direct drug infusion via cochleostomy in animal models. We utilized DNQX, a glutamate receptor antagonist that suppresses CAPs, as a test drug. We monitored the frequency-dependent changes in auditory nerve CAPs during drug infusion, and observed CAP suppression consistent with the expected drug transport path based on the geometry and tonotopic organization of the cochlea.

  14. Inevitability and Emergent Problems of Science & Technology Innovation Access to Integration

    Institute of Scientific and Technical Information of China (English)

    LIU Li-jun; LU Xin-mei

    2006-01-01

    The causes and the problems of integration of scientific & technical innovation (ISTI) and inevitability are proposed. The status of domestic scientific & technical innovation is analysed. A series of emergent managerial problems caused by the system ISTI (SISTI) are pointed out. Because of Hall three dimensions structure's enlightenment, a three dimensional logical net diagram in which the system integration of innovation based on problem in real world but not on disciplinary logic is drawn. The intelligent group's need span is greater under the conditions of relatively low material level than common groups who have lower degree of education. The SISTI is composed by multi-rule and intelligent multi-agent behavior. It is concluded that the logical relationships of integrated technology which based on the author's experience and observation must be considerded for a valid management of SISTI.

  15. Integration of axiomatic design and theory of inventive problem solving for conceptual design

    Institute of Scientific and Technical Information of China (English)

    TIAN Qi-hua; XIAO Ren-bin; ZHONG Yi-fang; DU Yi-xian; YANG Hong-mei

    2009-01-01

    Axiomatic design (AD) and theory of inventive problem solving (TRIZ) are widely used in conceptual design. Both of them have limitations, however. We presented an integrated model of these two methods to increase the efficiency and quality of the problem solving process for conceptual design. AD is used for systematically defining and structuring a problem into a hierarchy. Sometimes, the design matrix is coupled in AD which indicates the functional requirements are coupled. TRIZ separation principles can be used to separate non-independent design parameters, which provide innovative solutions at each hierarchical level. We applied the integrated model to the heating and drying equipment of bitumen reproduction device. The result verifies that the integrated model can work very well in conceptual design.

  16. Flowrate targeting for threshold problems and plant-wide integration for water network synthesis.

    Science.gov (United States)

    Foo, Dominic Chwan Yee

    2008-07-01

    Water reuse/recycle has gained much attention in recent years for environmental sustainability reasons, as well as the rising costs of fresh water and effluent treatment. Process integration techniques for the synthesis of water network have been widely accepted as a promising tool to reduce fresh water and wastewater flowrates via in-plant water reuse/recycle. To date, the focus in this area has been on water network synthesis problems, with little attention dedicated to the rare but realistic cases of so-called threshold problems. In this work, targeting for threshold problems in a water network is addressed using the recently developed numerical tool of water cascade analysis (WCA). Targeting for plant-wide integration is then addressed. By sending water sources across different geographical zones in plant-wide integration, the overall fresh water and wastewater flowrates are reduced simultaneously.

  17. Research and Design of Medical Data Integration Platform%医疗数据集成平台的研究与设计

    Institute of Scientific and Technical Information of China (English)

    胡芳; 沈绍武

    2015-01-01

    In this paper, through in-depth study on characteristics of hospital information system (HIS) construction and requirements of medical data integration, and combined with the medical data straits of heterogeneity, multi-source, complexity, dynamic growth, etc., the problem of information exchange in different systems was aimed to solved, in order to realize medical data sharing among internal systems in hospital.Based on Extensible Markup Language (XML), public data model was described by XML Schema technology. Global and local medical data were queried using XQuery technology. The results showed that a medical data integration platform based on HL7 standard and the middleware technologies were proposed. It was concluded that the platform shielded the heterogeneity of underlying medical data by middleware technology. It finally realized the global query and transparent access of medical data in HIS for users.%目的:本文通过深入分析医院信息系统建设的特点和医疗数据集成的需求,结合医疗数据的异构多源、庞大复杂、动态增长等特点,旨在解决医院各个系统之间的信息互通,实现医院内部系统之间的数据共享.方法:该集成平台以XML技术为基础,采用XML Schema技术来描述集成平台的公共数据模型;利用统一查询语言XQuery进行全局和局部医疗数据查询.结果:提出了一种以HL7标准为基础的基于中间件技术的医疗数据集成平台架构.结论:该平台利用中间件屏蔽底层医疗数据的异构性,最终实现用户对全院医疗数据的全局查询和透明访问.

  18. 基于SOA架构的农村信息资源集成平台设计%Design of Rural Information Resource Integration Platform Based on SOA

    Institute of Scientific and Technical Information of China (English)

    段延娥

    2012-01-01

    The rural informatization refers to the widespread application and promotion of communication technology and computer technology in rural production, life and social management, and is a very important part of social informatization. The information resource construction as the core content of rural informatization construction, has the direct impact on the level of rural informatization construction. On the basis of sufficient analyzing the current situation of our country rural information resources construction, the existing problems of the rural information resources construction were discussed in detail, and the concept, basic theory and implementation technique of service-oriented architecture (SOA) aredescribed. Using the designing theory of SOA, a comprehensive information resource integration platform based on SOA was presented, and the basic principle and model of design, and SSO design of the integration platform was discussed in details.%农村信息化是指通讯技术和计算机技术在农村生产、生活和社会管理中实现普遍应用和推广的过程,是社会信息化的重要组成部分。农村信息资源建设作为农村信息化建设的核心内容,直接影响着农村信息化建设的水平。在充分分析我国农村信息资源建设现状和发展瓶颈的基础上,详细探讨了农村信息资源建设中存在的问题,阐述了面向服务的体系架构SOA的基本内涵、工作原理、实现技术。利用面向服务架构的设计思想,提出了基于SOA架构的农村信息资源集成平台建设,重点讨论了集成平台的设计原则、设计模型及SSO安全性设计。

  19. Integration of the TNXYZ computer program inside the platform Salome; Integracion del programa de computo TNXYZ dentro de la plataforma Salome

    Energy Technology Data Exchange (ETDEWEB)

    Chaparro V, F. J.

    2014-07-01

    The present work shows the procedure carried out to integrate the code TNXYZ as a calculation tool at the graphical simulation platform Salome. The TNXYZ code propose a numerical solution of the neutron transport equation, in several groups of energy, steady-state and three-dimensional geometry. In order to discretized the variables of the transport equation, the code uses the method of discrete ordinates for the angular variable, and a nodal method for the spatial dependence. The Salome platform is a graphical environment designed for building, editing and simulating mechanical models mainly focused on the industry and unlike other software, in order to form a complete scheme of pre and post processing of information, to integrate and control an external source code. Before the integration the in the Salome platform TNXYZ code was upgraded. TNXYZ was programmed in the 90s using Fortran 77 compiler; for this reason the code was adapted to the characteristics of the current Fortran compilers; in addition, with the intention of extracting partial results over the process sequence, the original structure of the program underwent a modularization process, i.e. the main program was divided into sections where the code performs major operations. This procedure is controlled by the information module (YACS) on Salome platform, and it could be useful for a subsequent coupling with thermal-hydraulics codes. Finally, with the help of the Monte Carlo code Serpent several study cases were defined in order to check the process of integration; the verification process consisted in performing a comparison of the results obtained with the code executed as stand-alone and after modernized, integrated and controlled by the Salome platform. (Author)

  20. Integrative Consensus: A Systematic Approach to Integrating Comprehensive Assessment Data for Young Children with Behavior Problems

    Science.gov (United States)

    Shernoff, Elisa S.; Hill, Carri; Danis, Barbara; Leventhal, Bennett L.; Wakschlag, Lauren S.

    2014-01-01

    Comprehensive assessments that include parents and teachers are essential when assessing young children vulnerable to emotional and behavioral problems given the multiple systems and contexts that influence and support optimal development (U. Bronfenbrenner & P. A. Morris, 2006; M. J. Guralnick, 2011). However, more data complicate clinical…

  1. Integration of study material in the problem-based learning method

    Directory of Open Access Journals (Sweden)

    S. Becker

    2003-05-01

    Full Text Available Throughout the world educators are starting to realise that integrated curricula reflect the “real world”. Students learn how to integrate theory appropriately with practice and it stimulates higher order thinking skills. Problem-based learning (PBL was used as a learning strategy in an integrated undergraduate programme. A quantatative non-experimental design, a survey, was used to determine how problem-based learning influences integration of learning by the students. Using a purposive sampling method all the first-year nursing students (43 at the University of the Free State participating in the programme were included in the study. Data was collected by means of a student perception questionnaire (SPQ.

  2. The integration of FMEA with other problem solving tools: A review of enhancement opportunities

    Science.gov (United States)

    Ng, W. C.; Teh, S. Y.; Low, H. C.; Teoh, P. C.

    2017-09-01

    Failure Mode Effect Analysis (FMEA) is one the most effective and accepted problem solving (PS) tools for most of the companies in the world. Since FMEA was first introduced in 1949, practitioners have implemented FMEA in various industries for their quality improvement initiatives. However, studies have shown that there are drawbacks that hinder the effectiveness of FMEA for continuous quality improvement from product design to manufacturing. Therefore, FMEA is integrated with other PS tools such as inventive problem solving methodology (TRIZ), Quality Function Deployment (QFD), Root Cause Analysis (RCA) and seven basic tools of quality to address the drawbacks. This study begins by identifying the drawbacks in FMEA. A comprehensive literature review on the integration of FMEA with other tools is carried out to categorise the integrations based on the drawbacks identified. The three categories are inefficiency of failure analysis, psychological inertia and neglect of customers’ perspective. This study concludes by discussing the gaps and opportunities in the integration for future research.

  3. Frequency-Domain Assessment of Integration Schemes for Earthquake Engineering Problems

    Directory of Open Access Journals (Sweden)

    Juana Arias-Trujillo

    2015-01-01

    Full Text Available Although numerical integration is a technique commonly employed in many time-dependent problems, usually its accuracy relied on a time interval small enough. However, taking into account that time integration formulae can be considered to be recursive digital filters, in this research a criterion based on transfer functions has been employed to characterize a wide range of integration algorithms from a frequency approach, both in amplitude and in phase. By adopting Nyquist’s criterion to avoid the aliasing phenomena, a total of seven integration schemes have been reviewed in terms of accuracy and distortion effects on the frequency content of the signal. Some of these schemes are very well-known polynomial approximations with different degrees of interpolation, but others have been especially defined for solving earthquake engineering problems or have been extracted from the digital signal processing methodology. Finally, five examples have been developed to validate this frequency approach and to investigate its influence on practical dynamic problems. This research, focused on earthquake and structural engineering, reveals that numerical integration formulae are clearly frequency-dependent, a conclusion that obviously has a relevant interest in all dynamic engineering problems, even when they are formulated and solved in the time-domain.

  4. Material derivatives of boundary integral operators in electromagnetism and application to inverse scattering problems

    Science.gov (United States)

    Ivanyshyn Yaman, Olha; Le Louër, Frédérique

    2016-09-01

    This paper deals with the material derivative analysis of the boundary integral operators arising from the scattering theory of time-harmonic electromagnetic waves and its application to inverse problems. We present new results using the Piola transform of the boundary parametrisation to transport the integral operators on a fixed reference boundary. The transported integral operators are infinitely differentiable with respect to the parametrisations and simplified expressions of the material derivatives are obtained. Using these results, we extend a nonlinear integral equations approach developed for solving acoustic inverse obstacle scattering problems to electromagnetism. The inverse problem is formulated as a pair of nonlinear and ill-posed integral equations for the unknown boundary representing the boundary condition and the measurements, for which the iteratively regularized Gauss-Newton method can be applied. The algorithm has the interesting feature that it avoids the numerous numerical solution of boundary value problems at each iteration step. Numerical experiments are presented in the special case of star-shaped obstacles.

  5. Singular integral equations boundary problems of function theory and their application to mathematical physics

    CERN Document Server

    Muskhelishvili, N I

    2011-01-01

    Singular integral equations play important roles in physics and theoretical mechanics, particularly in the areas of elasticity, aerodynamics, and unsteady aerofoil theory. They are highly effective in solving boundary problems occurring in the theory of functions of a complex variable, potential theory, the theory of elasticity, and the theory of fluid mechanics.This high-level treatment by a noted mathematician considers one-dimensional singular integral equations involving Cauchy principal values. Its coverage includes such topics as the Hölder condition, Hilbert and Riemann-Hilbert problem

  6. NEW NUMERICAL METHOD FOR VOLTERRA INTEGRAL EQUATION OF THE SECOND KIND IN PIEZOELASTIC DYNAMIC PROBLEMS

    Institute of Scientific and Technical Information of China (English)

    丁皓江; 王惠明; 陈伟球

    2004-01-01

    The elastodynamic problems of piezoelectric hollow cylinders and spheres under radial deformation can be transformed into a second kind Volterra integral equation about a function with respect to time, which greatly simplifies the solving procedure for such elastodynamic problems. Meanwhile, it becomes very important to find a way to solve the second kind Volterra integral equation effectively and quickly. By using an interpolation function to approximate the unknown function, two new recursive formulae were derived, based on which numerical solution can be obtained step by step. The present method can provide accurate numerical results efficiently. It is also very stable for long time calculating.

  7. PRECISE INTEGRAL ALGORITHM BASED SOLUTION FOR TRANSIENT INVERSE HEAT CONDUCTION PROBLEMS WITH MULTI-VARIABLES

    Institute of Scientific and Technical Information of China (English)

    WANG Yi-bo; YANG Hai-tian; WU Rui-feng

    2005-01-01

    By modeling direct transient heat conduction problems via finite element method (FEM) and precise integral algorithm, a new approach is presented to solve transient inverse heat conduction problems with multi-variables. Firstly, the spatial space and temporal domain are discretized by FEM and precise integral algorithm respectively. Then, the high accuracy semi-analytical solution of direct problem can be got. Finally, based on the solution, the computing model of inverse problem and expression of sensitivity analysis are established. Single variable and variables combined identifications including thermal parameters, boundary conditions and source-related terms etc. are given to validate the approach proposed in 1-D and 2-D cases. The effects of noise data and initial guess on the results are investigated. The numerical examples show the effectiveness of this approach.

  8. Integrating Problem-Based Learning and Simulation: Effects on Student Motivation and Life Skills.

    Science.gov (United States)

    Roh, Young Sook; Kim, Sang Suk

    2015-07-01

    Previous research has suggested that a teaching strategy integrating problem-based learning and simulation may be superior to traditional lecture. The purpose of this study was to assess learner motivation and life skills before and after taking a course involving problem-based learning and simulation. The design used repeated measures with a convenience sample of 83 second-year nursing students who completed the integrated course. Data from a self-administered questionnaire measuring learner motivation and life skills were collected at pretest, post-problem-based learning, and post-simulation time points. Repeated-measures analysis of variance determined that the mean scores for total learner motivation (F=6.62, P=.003), communication (F=8.27, Pproblem solving (F=6.91, P=.001), and self-directed learning (F=4.45, P=.016) differed significantly between time points. Post hoc tests using the Bonferroni correction revealed that total learner motivation and total life skills significantly increased both from pretest to postsimulation and from post-problem-based learning test to postsimulation test. Subscales of learner motivation and life skills, intrinsic goal orientation, self-efficacy for learning and performance, problem-solving skills, and self-directed learning skills significantly increased both from pretest to postsimulation test and from post-problem-based learning test to post-simulation test. The results demonstrate that an integrating problem-based learning and simulation course elicits significant improvement in learner motivation and life skills. Simulation plus problem-based learning is more effective than problem-based learning alone at increasing intrinsic goal orientation, task value, self-efficacy for learning and performance, problem solving, and self-directed learning.

  9. MALDI-TOF-MS Platform for Integrated Proteomic and Peptidomic Profiling of Milk Samples Allows Rapid Detection of Food Adulterations.

    Science.gov (United States)

    Sassi, Mauro; Arena, Simona; Scaloni, Andrea

    2015-07-15

    Adulteration of ovine, caprine, and buffalo milks with more common bovine material occurs for economic reasons and seasonal availability. Frauds are also associated with the use of powdered milk instead of declared, fresh material. In this context, various analytical methods have been adapted to dairy science applications with the aim to evaluate adulteration of milk samples, although time-consuming, suitable only for speciation or thermal treatment analysis, or useful for a specific fraud type. An integrated MALDI-TOF-MS platform for the combined peptidomic and proteomic profiling of milk samples is here presented, which allows rapid detection of illegal adulterations due to the addition of either nondeclared bovine material to water buffalo, goat, and ovine milks or of powdered bovine milk to the fresh counterpart. Peptide and protein markers of each animal milk were identified after direct analysis of a large number of diluted skimmed and/or enriched diluted skimmed filtrate samples. In parallel, markers of thermal treatment were characterized in different types of commercial milks. Principal components scores of ad hoc prepared species- or thermal treatment-associated adulterated milk samples were subjected to partial least-squares regression, permitting a fast accurate estimate of the fraud extents in test samples at either protein and peptide level. With respect to previous reports on MALDI-TOF-MS protein profiling methodologies for milk speciation, this study extends that approach to the analysis of the thermal treatment and introduces an independent, complementary peptide profiling measurement, which integrates protein data with additional information on peptides, validating final results and ultimately broadening the method applicability.

  10. An integrated platform enabling optogenetic illumination of Caenorhabditis elegans neurons and muscular force measurement in microstructured environments.

    Science.gov (United States)

    Qiu, Zhichang; Tu, Long; Huang, Liang; Zhu, Taoyuanmin; Nock, Volker; Yu, Enchao; Liu, Xiao; Wang, Wenhui

    2015-01-01

    Optogenetics has been recently applied to manipulate the neural circuits of Caenorhabditis elegans (C. elegans) to investigate its mechanosensation and locomotive behavior, which is a fundamental topic in model biology. In most neuron-related research, free C. elegans moves on an open area such as agar surface. However, this simple environment is different from the soil, in which C. elegans naturally dwells. To bridge up the gap, this paper presents integration of optogenetic illumination of C. elegans neural circuits and muscular force measurement in a structured microfluidic chip mimicking the C. elegans soil habitat. The microfluidic chip is essentially a ∼1 × 1 cm(2) elastomeric polydimethylsiloxane micro-pillar array, configured in either form of lattice (LC) or honeycomb (HC) to mimic the environment in which the worm dwells. The integrated system has four key modules for illumination pattern generation, pattern projection, automatic tracking of the worm, and force measurement. Specifically, two optical pathways co-exist in an inverted microscope, including built-in bright-field illumination for worm tracking and pattern generation, and added-in optogenetic illumination for pattern projection onto the worm body segment. The behavior of a freely moving worm in the chip under optogenetic manipulation can be recorded for off-line force measurements. Using wild-type N2 C. elegans, we demonstrated optical illumination of C. elegans neurons by projecting light onto its head/tail segment at 14 Hz refresh frequency. We also measured the force and observed three representative locomotion patterns of forward movement, reversal, and omega turn for LC and HC configurations. Being capable of stimulating or inhibiting worm neurons and simultaneously measuring the thrust force, this enabling platform would offer new insights into the correlation between neurons and locomotive behaviors of the nematode under a complex environment.

  11. ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings.

    Science.gov (United States)

    Pelletier, D; Wiegers, T C; Enayetallah, A; Kibbey, C; Gosink, M; Koza-Taylor, P; Mattingly, C J; Lawton, M

    2016-01-01

    Attempts are frequently made to investigate adverse findings from preclinical toxicology studies in order to better understand underlying toxicity mechanisms. These efforts often begin with limited information, including a description of the adverse finding, knowledge of the structure of the chemical associated with its cause and the intended pharmacological target. ToxEvaluator was developed jointly by Pfizer and the Comparative Toxicogenomics Database (http://ctdbase.org) team at North Carolina State University as an in silico platform to facilitate interpretation of toxicity findings in light of prior knowledge. Through the integration of a diverse set of in silico tools that leverage a number of public and proprietary databases, ToxEvaluator streamlines the process of aggregating and interrogating diverse sources of information. The user enters compound and target identifiers, and selects adverse event descriptors from a safety lexicon and mapped MeSH disease terms. ToxEvaluator provides a summary report with multiple distinct areas organized according to what target or structural aspects have been linked to the adverse finding, including primary pharmacology, structurally similar proprietary compounds, structurally similar public domain compounds, predicted secondary (i.e. off-target) pharmacology and known secondary pharmacology. Similar proprietary compounds and their associated in vivo toxicity findings are reported, along with a link to relevant supporting documents. For similar public domain compounds and interacting targets, ToxEvaluator integrates relationships curated in Comparative Toxicogenomics Database, returning all direct and inferred linkages between them. As an example of its utility, we demonstrate how ToxEvaluator rapidly identified direct (primary pharmacology) and indirect (secondary pharmacology) linkages between cerivastatin and myopathy.

  12. Mixed Problem with an Integral Two-Space-Variables condition for a Third Order Parabolic Equation

    Directory of Open Access Journals (Sweden)

    Oussaeif Taki Eddine

    2016-10-01

    Full Text Available This paper is concerned with the existence and uniqueness of a strong solution to a mixed problem which combine Dirichlet and integral two space variables conditions for a third order linear parabolic equation. The proof uses a functional analysis method presented, which it is based on an energy inequality and the density of the range of the operator generated by the problem.

  13. An integrable Poisson map generated from the eigenvalue problem of the Lotka-Volterra hierarchy

    Energy Technology Data Exchange (ETDEWEB)

    Wu Yongtang [Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong (China); Wang Hongye [Department of Mathematics, Zhengzhou University, Henan (China); Du Dianlou [Department of Mathematics, Zhengzhou University, Henan (China)]. E-mail: ddl@zzu.edu.cn

    2002-05-03

    A 3x3 discrete eigenvalue problem associated with the Lotka-Volterra hierarchy is studied and the corresponding nonlinearized one, an integrable Poisson map with a Lie-Poisson structure, is also presented. Moreover, a 2x2 nonlinearized eigenvalue problem, which also begets the Lotka-Volterra hierarchy, is proved to be a reduction of the Poisson map on the leaves of the symplectic foliation. (author)

  14. From sample-to-answer: integrated genotyping and immunological analysis microfluidic platforms for the diagnostic and treatment of coeliac disease

    Science.gov (United States)

    Jung, M.; Höth, J.; Erwes, J.; Latta, D.; Strobach, X.; Hansen-Hagge, T.; Klemm, R.; Gärtner, C.; Demiris, T. M.; O'Sullivan, C.; Ritzi-Lehnert, M.; Drese, K. S.

    2011-02-01

    Taking advantage of microfluidics technology, a Lab-on-Chip system was developed offering the possibility of performing HLA (Human Leukocyte Antigen) typing to test genetic predisposition to coeliac disease and measure the level of immunodeficiency at the point-of-care. These analysis procedures are implemented on two different microfluidic cartridges, both having identical interfacial connections to the identical automated instrument. In order to assess the concentration of the targeted analytes in human blood, finger prick samples are processed to either extract genomic DNA carrying the coeliac disease gene or blood plasma containing the disease specific antibodies. We present here the different microfluidic modules integrated in a common platform, capable of automated sample preparation and analyte detection. In summary, this new microfluidic approach will dramatically reduce the costs of materials (polymer for the disposable chips and minute amount of bio-reagents) and minimize the time for analysis down to less than 20 minutes. In comparison to the state of the art detection of coeliac disease this work represents a tremendous improvement for the patient's quality of live and will significantly reduce the cost burden on the health care system.

  15. The road map towards providing a robust Raman spectroscopy-based cancer diagnostic platform and integration into clinic

    Science.gov (United States)

    Lau, Katherine; Isabelle, Martin; Lloyd, Gavin R.; Old, Oliver; Shepherd, Neil; Bell, Ian M.; Dorney, Jennifer; Lewis, Aaran; Gaifulina, Riana; Rodriguez-Justo, Manuel; Kendall, Catherine; Stone, Nicolas; Thomas, Geraint; Reece, David

    2016-03-01

    Despite the demonstrated potential as an accurate cancer diagnostic tool, Raman spectroscopy (RS) is yet to be adopted by the clinic for histopathology reviews. The Stratified Medicine through Advanced Raman Technologies (SMART) consortium has begun to address some of the hurdles in its adoption for cancer diagnosis. These hurdles include awareness and acceptance of the technology, practicality of integration into the histopathology workflow, data reproducibility and availability of transferrable models. We have formed a consortium, in joint efforts, to develop optimised protocols for tissue sample preparation, data collection and analysis. These protocols will be supported by provision of suitable hardware and software tools to allow statistically sound classification models to be built and transferred for use on different systems. In addition, we are building a validated gastrointestinal (GI) cancers model, which can be trialled as part of the histopathology workflow at hospitals, and a classification tool. At the end of the project, we aim to deliver a robust Raman based diagnostic platform to enable clinical researchers to stage cancer, define tumour margin, build cancer diagnostic models and discover novel disease bio markers.

  16. The Qatar National Historic Environment Record: a Platform for the Development of a Fully-Integrated Cultural Heritage Management Application

    Science.gov (United States)

    Cuttler, R. T. H.; Tonner, T. W. W.; Al-Naimi, F. A.; Dingwall, L. M.; Al-Hemaidi, N.

    2013-07-01

    The development of the Qatar National Historic Environment Record (QNHER) by the Qatar Museums Authority and the University of Birmingham in 2008 was based on a customised, bilingual Access database and ArcGIS. While both platforms are stable and well supported, neither was designed for the documentation and retrieval of cultural heritage data. As a result it was decided to develop a custom application using Open Source code. The core module of this application is now completed and is orientated towards the storage and retrieval of geospatial heritage data for the curation of heritage assets. Based on MIDAS Heritage data standards and regionally relevant thesauri, it is a truly bilingual system. Significant attention has been paid to the user interface, which is userfriendly and intuitive. Based on a suite of web services and accessed through a web browser, the system makes full use of internet resources such as Google Maps and Bing Maps. The application avoids long term vendor ''tie-ins'' and as a fully integrated data management system, is now an important tool for both cultural resource managers and heritage researchers in Qatar.

  17. Ensembles of indium phosphide nanowires: physical properties and functional devices integrated on non-single crystal platforms

    Energy Technology Data Exchange (ETDEWEB)

    Kobayashi, Nobuhiko P.; Lohn, Andrew; Onishi, Takehiro [University of California, Santa Cruz (United States). Baskin School of Engineering; NASA Ames Research Center, Nanostructured Energy Conversion Technology and Research (NECTAR), Advanced Studies Laboratories, Univ. of California Santa Cruz, Moffett Field, CA (United States); Mathai, Sagi; Li, Xuema; Straznicky, Joseph; Wang, Shih-Yuan; Williams, R.S. [Hewlett-Packard Laboratories, Information and Quantum Systems Laboratory, Palo Alto, CA (United States); Logeeswaran, V.J.; Islam, M.S. [University of California Davis, Electrical and Computer Engineering, Davis, CA (United States)

    2009-06-15

    A new route to grow an ensemble of indium phosphide single-crystal semiconductor nanowires is described. Unlike conventional epitaxial growth of single-crystal semiconductor films, the proposed route for growing semiconductor nanowires does not require a single-crystal semiconductor substrate. In the proposed route, instead of using single-crystal semiconductor substrates that are characterized by their long-range atomic ordering, a template layer that possesses short-range atomic ordering prepared on a non-single-crystal substrate is employed. On the template layer, epitaxial information associated with its short-range atomic ordering is available within an area that is comparable to that of a nanowire root. Thus the template layer locally provides epitaxial information required for the growth of semiconductor nanowires. In the particular demonstration described in this paper, hydrogenated silicon was used as a template layer for epitaxial growth of indium phosphide nanowires. The indium phosphide nanowires grown on the hydrogenerated silicon template layer were found to be single crystal and optically active. Simple photoconductors and pin-diodes were fabricated and tested with the view towards various optoelectronic device applications where group III-V compound semiconductors are functionally integrated onto non-single-crystal platforms. (orig.)

  18. An Integrated microfluidic platform for liquid droplet in gas flow generation with in liquid flow collection and manipulation

    Science.gov (United States)

    Tirandazi, Pooyan; Hidrovo, Carlos H.

    2016-11-01

    Discretization of biological samples and chemical reactions within digital droplets is a powerful technique which has rapidly emerged in many biochemical syntheses. The ability to generate, manipulate, and monitor millions of microdroplets in a short time provides great potential for high throughput screening and detection in microbiology. Here we report a microfluidic device for the formation of uniform microdroplets (50 μm-100 μm) using a high speed gas as the continuous phase. Gas-borne droplets are generated in a chip-based flow-focusing device fabricated in PDMS, and travel along the gaseous microchannel and are subsequently captured within a second liquid phase. The droplets are then transferred and collected in a minichamber and move into the manipulation section for further processing operations on the drops. All these steps are performed automatically in a single multilayer chip. This integrated microfluidic platform for generation, collection, and manipulation of the droplets provides great opportunities for monitoring and detection of gas-analytes. Utilizing the generated picoliter airborne droplets feature lower reaction times and higher transfer rates as compared to conventional air sampling techniques. Thus, it can greatly facilitate the investigation of airborne analytes by interrogation of the digital droplets using different analytical techniques. Furthermore, the presented liquid-in-gas generation method can be utilized for production of oil-free microparticles and microcapsules used in the food industry and for drug delivery.

  19. Laser-induced heating integrated with a microfluidic platform for real-time DNA replication and detection

    Science.gov (United States)

    Hung, Min-Sheng; Ho, Chia-Chin; Chen, Chih-Pin

    2016-08-01

    This study developed a microfluidic platform for replicating and detecting DNA in real time by integrating a laser and a microfluidic device composed of polydimethylsiloxane. The design of the microchannels consisted of a laser-heating area and a detection area. An infrared laser was used as the heating source for DNA replication, and the laser power was adjusted to heat the solutions directly. In addition, strong biotin-avidin binding was used to capture and detect the replicated products. The biotin on one end was bound to avidin and anchored to the surface of the microchannels, whereas the biotin on the other end was bound to the quantum dots (Qdots). The results showed that the fluorescent intensity of the Qdots bound to the replicated products in the detection area increased with the number of thermal cycles created by the laser. When the number of thermal cycles was ≥10, the fluorescent intensity of the Qdots was directly detectable on the surface of the microchannels. The proposed method is more sensitive than detection methods entailing gel electrophoresis.

  20. PML bodies provide an important platform for the maintenance of telomeric chromatin integrity in embryonic stem cells.

    Science.gov (United States)

    Chang, Fiona T M; McGhie, James D; Chan, F Lyn; Tang, Michelle C; Anderson, Melissa A; Mann, Jeffrey R; Andy Choo, K H; Wong, Lee H

    2013-04-01

    We have previously shown that α-thalassemia mental retardation X-linked (ATRX) and histone H3.3 are key regulators of telomeric chromatin in mouse embryonic stem cells. The function of ATRX and H3.3 in the maintenance of telomere chromatin integrity is further demonstrated by recent studies that show the strong association of ATRX/H3.3 mutations with alternative lengthening of telomeres in telomerase-negative human cancer cells. Here, we demonstrate that ATRX and H3.3 co-localize with the telomeric DNA and associated proteins within the promyelocytic leukemia (PML) bodies in mouse ES cells. The assembly of these telomere-associated PML bodies is most prominent at S phase. RNA interference (RNAi)-mediated knockdown of PML expression induces the disassembly of these nuclear bodies and a telomere dysfunction phenotype in mouse ES cells. Loss of function of PML bodies in mouse ES cells also disrupts binding of ATRX/H3.3 and proper establishment of histone methylation pattern at the telomere. Our study demonstrates that PML bodies act as epigenetic regulators by serving as platforms for the assembly of the telomeric chromatin to ensure a faithful inheritance of epigenetic information at the telomere.

  1. Independent Evaluation of the integrated Community Case Management of Childhood Illness Strategy in Malawi Using a National Evaluation Platform Design.

    Science.gov (United States)

    Amouzou, Agbessi; Kanyuka, Mercy; Hazel, Elizabeth; Heidkamp, Rebecca; Marsh, Andrew; Mleme, Tiope; Munthali, Spy; Park, Lois; Banda, Benjamin; Moulton, Lawrence H; Black, Robert E; Hill, Kenneth; Perin, Jamie; Victora, Cesar G; Bryce, Jennifer

    2016-03-01

    We evaluated the impact of integrated community case management of childhood illness (iCCM) on careseeking for childhood illness and child mortality in Malawi, using a National Evaluation Platform dose-response design with 27 districts as units of analysis. "Dose" variables included density of iCCM providers, drug availability, and supervision, measured through a cross-sectional cellular telephone survey of all iCCM-trained providers. "Response" variables were changes between 2010 and 2014 in careseeking and mortality in children aged 2-59 months, measured through household surveys. iCCM implementation strength was not associated with changes in careseeking or mortality. There were fewer than one iCCM-ready provider per 1,000 under-five children per district. About 70% of sick children were taken outside the home for care in both 2010 and 2014. Careseeking from iCCM providers increased over time from about 2% to 10%; careseeking from other providers fell by a similar amount. Likely contributors to the failure to find impact include low density of iCCM providers, geographic targeting of iCCM to "hard-to-reach" areas although women did not identify distance from a provider as a barrier to health care, and displacement of facility careseeking by iCCM careseeking. This suggests that targeting iCCM solely based on geographic barriers may need to be reconsidered.

  2. Towards a fully functional integrated photonic-electronic platform via a single SiGe growth step

    Science.gov (United States)

    Littlejohns, Callum G.; Dominguez Bucio, Thalia; Nedeljkovic, Milos; Wang, Hong; Mashanovich, Goran Z.; Reed, Graham T.; Gardes, Frederic Y.

    2016-01-01

    Silicon-germanium (Si1-xGex) has become a material of great interest to the photonics and electronics industries due to its numerous interesting properties including higher carrier mobilities than Si, a tuneable lattice constant, and a tuneable bandgap. In previous work, we have demonstrated the ability to form localised areas of single crystal, uniform composition SiGe-on-insulator. Here we present a method of simultaneously growing several areas of SiGe-on-insulator on a single wafer, with the ability to tune the composition of each localised SiGe area, whilst retaining a uniform composition in that area. We use a rapid melt growth technique that comprises of only a single Ge growth step and a single anneal step. This innovative method is key in working towards a fully integrated photonic-electronic platform, enabling the simultaneous growth of multiple compositions of device grade SiGe for electro-absorption optical modulators operating at a range of wavelengths, photodetectors, and bipolar transistors, on the same wafer. This is achieved by modifying the structural design of the SiGe strips, without the need to modify the growth conditions, and by using low cost, low thermal-budget methods.

  3. A cylinder based calibration method for integrating a line structured light sensor with a rotation-translation platform

    Science.gov (United States)

    Zhou, Jingbo; Li, Yuehua; Liu, Lijian

    2016-09-01

    As a non-contact measuring apparatus, line structured light sensor (LSLS) can only get one profile of an object without the combination with other motional axes. To achieve the complete 3D measurement, a rotation-translation platform was integrated with the LSLS, and a cylinder based calibration method was also brought out. Firstly, the calibration model was proposed to determine the transformation matrix between the measuring coordinate frame (MCF) and the sensor coordinate frame (SCF). This model relies on the fact that the projection of an arbitrary intersection profile between the laser plane and the cylinder in its axis direction lies on a circle with a radius equal to the cylinder. Then, for a specified rotated angle and translated position of the object, the measured data from the SCF could all be transformed into the MCF, and the complete surface data could be obtained. Finally, a cylinder and a rectangular block were inspected by the proposed method. The surface data was successfully obtained and their intersection profiles indicate a high measuring accuracy of the proposed method. The method was further verified by the measured results of a screw surface.

  4. A priority-based heuristic algorithm (PBHA for optimizing integrated process planning and scheduling problem

    Directory of Open Access Journals (Sweden)

    Muhammad Farhan Ausaf

    2015-12-01

    Full Text Available Process planning and scheduling are two important components of a manufacturing setup. It is important to integrate them to achieve better global optimality and improved system performance. To find optimal solutions for integrated process planning and scheduling (IPPS problem, numerous algorithm-based approaches exist. Most of these approaches try to use existing meta-heuristic algorithms for solving the IPPS problem. Although these approaches have been shown to be effective in optimizing the IPPS problem, there is still room for improvement in terms of quality of solution and algorithm efficiency, especially for more complicated problems. Dispatching rules have been successfully utilized for solving complicated scheduling problems, but haven’t been considered extensively for the IPPS problem. This approach incorporates dispatching rules with the concept of prioritizing jobs, in an algorithm called priority-based heuristic algorithm (PBHA. PBHA tries to establish job and machine priority for selecting operations. Priority assignment and a set of dispatching rules are simultaneously used to generate both the process plans and schedules for all jobs and machines. The algorithm was tested for a series of benchmark problems. The proposed algorithm was able to achieve superior results for most complex problems presented in recent literature while utilizing lesser computational resources.

  5. Facilitating students' application of the integral and the area under the curve concepts in physics problems

    Science.gov (United States)

    Nguyen, Dong-Hai

    This research project investigates the difficulties students encounter when solving physics problems involving the integral and the area under the curve concepts and the strategies to facilitate students learning to solve those types of problems. The research contexts of this project are calculus-based physics courses covering mechanics and electromagnetism. In phase I of the project, individual teaching/learning interviews were conducted with 20 students in mechanics and 15 students from the same cohort in electromagnetism. The students were asked to solve problems on several topics of mechanics and electromagnetism. These problems involved calculating physical quantities (e.g. velocity, acceleration, work, electric field, electric resistance, electric current) by integrating or finding the area under the curve of functions of related quantities (e.g. position, velocity, force, charge density, resistivity, current density). Verbal hints were provided when students made an error or were unable to proceed. A total number of 140 one-hour interviews were conducted in this phase, which provided insights into students' difficulties when solving the problems involving the integral and the area under the curve concepts and the hints to help students overcome those difficulties. In phase II of the project, tutorials were created to facilitate students' learning to solve physics problems involving the integral and the area under the curve concepts. Each tutorial consisted of a set of exercises and a protocol that incorporated the helpful hints to target the difficulties that students expressed in phase I of the project. Focus group learning interviews were conducted to test the effectiveness of the tutorials in comparison with standard learning materials (i.e. textbook problems and solutions). Overall results indicated that students learning with our tutorials outperformed students learning with standard materials in applying the integral and the area under the curve

  6. Achieving sustainable ground-water management by using GIS-integrated simulation tools: the EU H2020 FREEWAT platform

    Science.gov (United States)

    Rossetto, Rudy; De Filippis, Giovanna; Borsi, Iacopo; Foglia, Laura; Toegl, Anja; Cannata, Massimiliano; Neumann, Jakob; Vazquez-Sune, Enric; Criollo, Rotman

    2017-04-01

    In order to achieve sustainable and participated ground-water management, innovative software built on the integration of numerical models within GIS software is a perfect candidate to provide a full characterization of quantitative and qualitative aspects of ground- and surface-water resources maintaining the time and spatial dimension. The EU H2020 FREEWAT project (FREE and open source software tools for WATer resource management; Rossetto et al., 2015) aims at simplifying the application of EU water-related Directives through an open-source and public-domain, GIS-integrated simulation platform for planning and management of ground- and surface-water resources. The FREEWAT platform allows to simulate the whole hydrological cycle, coupling the power of GIS geo-processing and post-processing tools in spatial data analysis with that of process-based simulation models. This results in a modeling environment where large spatial datasets can be stored, managed and visualized and where several simulation codes (mainly belonging to the USGS MODFLOW family) are integrated to simulate multiple hydrological, hydrochemical or economic processes. So far, the FREEWAT platform is a large plugin for the QGIS GIS desktop software and it integrates the following capabilities: • the AkvaGIS module allows to produce plots and statistics for the analysis and interpretation of hydrochemical and hydrogeological data; • the Observation Analysis Tool, to facilitate the import, analysis and visualization of time-series data and the use of these data to support model construction and calibration; • groundwater flow simulation in the saturated and unsaturated zones may be simulated using MODFLOW-2005 (Harbaugh, 2005); • multi-species advective-dispersive transport in the saturated zone can be simulated using MT3DMS (Zheng & Wang, 1999); the possibility to simulate viscosity- and density-dependent flows is further accomplished through SEAWAT (Langevin et al., 2007); • sustainable

  7. The Effectiveness of Integrative Group Therapy on Improving Problem-Solving

    Directory of Open Access Journals (Sweden)

    Raheleh Maddah-Shoorcheh

    2014-05-01

    Full Text Available Background: Today, the psychological and behavioral science experts pay attention to the problem-solving skill as a basic skill. Improving the problem-solving skill is better done through psychological trainings in the form of a group in which communication is the most important issue. Therefore, the purpose of the present study is to investigate the effectiveness of integrative group therapy on the problem-solving skill. Materials and Methods: This study is an experimental study with pretest-posttest approach. Thirty clients who were referring to the Counseling and Psychological Services Center of Ferdowsi University of Mashhad were chosen based on screening method. In addition, they were randomly divided into two equal groups: experimental and control groups (13 participants each. Problem-solving questionnaire was used to collect data as well as the experimental intervention was integrative group therapy that was administrated during 8 weekly two-hour sessions. Mean and standard deviation were used for data analysis in the descriptive level and covariate method was used at the inference level (ANCOVA. Results: The results suggest that the problem-solving skills in the experimental group were significantly increased. Moreover, the significant difference was observed in subscales closeness, control, confidence and creative. Conclusion: Integrative group therapy could be an effective intervention for improving problem-solving skills.

  8. 基于专家医院的远程医疗管理平台整合方案研究%Integrated Solution Research of the Telemedicine Management Platform Based on Expert Hospital

    Institute of Scientific and Technical Information of China (English)

    李汉民; 商建国; 肖辉; 李志强

    2015-01-01

    Objective: Design a normal operation and management platform to adapt to the development of telemedicine business. Method:On the basis of analyzing the existing problems of remote medical building, this paper proposes remote medical management platform architecture of normalization operations, analyzes remote medical business applications and supervision under the architecture. Results: Scheme helps integrate telemedicine information system within the province, achieve high-quality medical resources sink, innovative remote medical service model. Conclusion: The unified data architecture and management standards will help promote the integration of provincial telemedicine platform, promote national telemedicine management platform construction, and achieve nationwide telemedicine business cooperative applications.%目的:设计一套适应远程医疗业务发展的常态化运营管理平台。方法:在分析远程医疗建设现存问题的基础上,提出了常态化运营的远程医疗管理平台架构,并分析了该架构下的远程医疗业务应用及业务监管。结果:方案有助于整合省域内远程医疗信息系统,实现优质医疗资源下沉,创新远程医疗服务模式。结论:统一的数据架构和管理规范有利于推进各省远程医疗平台融合,推动国家级远程医疗管理平台建设,实现全国范围的远程医疗业务协同应用。

  9. Modeling an integrated hospital management planning problem using integer optimization approach

    Science.gov (United States)

    Sitepu, Suryati; Mawengkang, Herman; Irvan

    2017-09-01

    Hospital is a very important institution to provide health care for people. It is not surprising that nowadays the people’s demands for hospital is increasing. However, due to the rising cost of healthcare services, hospitals need to consider efficiencies in order to overcome these two problems. This paper deals with an integrated strategy of staff capacity management and bed allocation planning to tackle these problems. Mathematically, the strategy can be modeled as an integer linear programming problem. We solve the model using a direct neighborhood search approach, based on the notion of superbasic variables.

  10. AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm

    Directory of Open Access Journals (Sweden)

    Jung Hyunchul

    2011-03-01

    Full Text Available Abstract Background Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a single platform and are not flexible enough to support custom changes, which arise from the new statistical methods, updated versions of reference data, and better platforms released every month or year. Current tools are so tightly coupled with reference information, such as reference genome, transcriptome database, and SNP, which are often erroneous or outdated, that the output results are incorrect and misleading. Results We developed AnyExpress, a software package that combines cross-platform gene expression data using a fast interval-matching algorithm. Supported platforms include next-generation-sequencing technology, microarray, SAGE, MPSS, and more. Users can define custom target transcriptome database references for probe/read mapping in any species, as well as criteria to remove undesirable probes/reads. AnyExpress offers scalable processing features such as binding, normalization, and summarization that are not present in existing software tools. As a case study, we applied AnyExpress to published Affymetrix microarray and Illumina NGS RNA-Seq data from human kidney and liver. The mean of within-platform correlation coefficient was 0.98 for within-platform samples in kidney and liver, respectively. The mean of cross-platform correlation coefficients was 0.73. These results confirmed those of the original and secondary studies. Applying filtering produced higher agreement between microarray and NGS, according to an agreement index calculated from differentially expressed genes. Conclusion AnyExpress can combine cross-platform gene expression data, process data from both open- and closed-platforms, select a custom target reference, filter out undesirable probes or reads based on custom-defined biological features, and perform quantile-normalization with

  11. Integration and the hold-up problem in the design organization for engineering projects

    NARCIS (Netherlands)

    Zerjav, Vedran; Hartmann, Timo; Javernick-Will, A.; Chinowsky, P.

    2012-01-01

    The paper presents a perspective of the design organization in engineering projects based on the economic concept of the hold-up problem. By integrating the economic theories on the boundaries of organizations into the existing knowledge on design in engineering projects, the paper hypothesizes a th

  12. Geometrical Obstruction to the Integrability of Geodesic Flows: an Application to the Anisotropic Kepler Problem

    OpenAIRE

    Santoprete, Manuele

    2002-01-01

    Resorting to classical techniques of Riemannian geometry we develop a geometrical method suitable to investigate the nonintegrability of geodesic flows and of natural Hamiltonian systems. Then we apply such method to the Anisotropic Kepler Problem (AKP) and we prove that it is not analytically integrable.

  13. Fast and reliable symplectic integration for planetary system N-body problems

    Science.gov (United States)

    Hernandez, David M.

    2016-06-01

    We apply one of the exactly symplectic integrators, which we call HB15, of Hernandez & Bertschinger, along with the Kepler problem solver of Wisdom & Hernandez, to solve planetary system N-body problems. We compare the method to Wisdom-Holman (WH) methods in the MERCURY software package, the MERCURY switching integrator, and others and find HB15 to be the most efficient method or tied for the most efficient method in many cases. Unlike WH, HB15 solved N-body problems exhibiting close encounters with small, acceptable error, although frequent encounters slowed the code. Switching maps like MERCURY change between two methods and are not exactly symplectic. We carry out careful tests on their properties and suggest that they must be used with caution. We then use different integrators to solve a three-body problem consisting of a binary planet orbiting a star. For all tested tolerances and time steps, MERCURY unbinds the binary after 0 to 25 years. However, in the solutions of HB15, a time-symmetric HERMITE code, and a symplectic Yoshida method, the binary remains bound for >1000 years. The methods' solutions are qualitatively different, despite small errors in the first integrals in most cases. Several checks suggest that the qualitative binary behaviour of HB15's solution is correct. The Bulirsch-Stoer and Radau methods in the MERCURY package also unbind the binary before a time of 50 years, suggesting that this dynamical error is due to a MERCURY bug.

  14. Developing Clinical Competency in Crisis Event Management: An Integrated Simulation Problem-Based Learning Activity

    Science.gov (United States)

    Liaw, S. Y.; Chen, F. G.; Klainin, P.; Brammer, J.; O'Brien, A.; Samarasekera, D. D.

    2010-01-01

    This study aimed to evaluate the integration of a simulation based learning activity on nursing students' clinical crisis management performance in a problem-based learning (PBL) curriculum. It was hypothesized that the clinical performance of first year nursing students who participated in a simulated learning activity during the PBL session…

  15. Positive Solutions of a Nonlinear Fourth-order Integral Boundary Value Problem

    Directory of Open Access Journals (Sweden)

    Benaicha Slimane

    2016-07-01

    Full Text Available In this paper, the existence of positive solutions for a nonlinear fourth-order two-point boundary value problem with integral condition is investigated. By using Krasnoselskii’s fixed point theorem on cones, sufficient conditions for the existence of at least one positive solutions are obtained.

  16. Integral boundary-value problem for impulsive fractional functional differential equations with infinite delay

    Directory of Open Access Journals (Sweden)

    Archana Chauhan

    2012-12-01

    Full Text Available In this article, we establish a general framework for finding solutions for impulsive fractional integral boundary-value problems. Then, we prove the existence and uniqueness of solutions by applying well known fixed point theorems. The obtained results are illustrated with an example for their feasibility.

  17. Integrating Problem-Based Learning with ICT for Developing Trainee Teachers' Content Knowledge and Teaching Skill

    Science.gov (United States)

    Karami, Mehdi; Karami, Zohreh; Attaran, Mohammad

    2013-01-01

    Professional teachers can guarantee the progress and the promotion of society because fostering the development of next generation is up to them and depends on their professional knowledge which has two kinds of sources: content knowledge and teaching skill. The aim of the present research was studying the effect of integrating problem-based…

  18. Training Tomorrow's Environmental Problem Solvers: An Integrative Approach to Graduate Education

    Science.gov (United States)

    Moslemi, Jennifer M.; Capps, Krista A.; Johnson, Mark S.; Maul, Jude; McIntyre, Peter B.; Melvin, April M.; Vadas, Timothy M.; Vallano, Dena M.; Watkins, James M.; Weiss, Marissa

    2009-01-01

    Environmental problems are generally complex and blind to disciplinary boundaries. Efforts to devise long-term solutions require collaborative research that integrates knowledge across historically disparate fields, yet the traditional model for training new scientists emphasizes personal independence and disciplinary focus. Growing awareness of…

  19. Integration and the hold-up problem in the design organization for engineering projects

    NARCIS (Netherlands)

    Zerjav, Vedran; Hartmann, Timo; Javernick-Will, A.; Chinowsky, P.

    2012-01-01

    The paper presents a perspective of the design organization in engineering projects based on the economic concept of the hold-up problem. By integrating the economic theories on the boundaries of organizations into the existing knowledge on design in engineering projects, the paper hypothesizes a

  20. RBSDE's with jumps and the related obstacle problems for integral-partial differential equations

    Institute of Scientific and Technical Information of China (English)

    FAN; Yulian

    2006-01-01

    The author proves, when the noise is driven by a Brownian motion and an independent Poisson random measure, the one-dimensional reflected backward stochastic differential equation with a stopping time terminal has a unique solution. And in a Markovian framework, the solution can provide a probabilistic interpretation for the obstacle problem for the integral-partial differential equation.