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Sample records for plasma filament

  1. Radial interchange motions of plasma filaments

    DEFF Research Database (Denmark)

    Garcia, O.E.; Bian, N.H.; Fundamenski, W.

    2006-01-01

    reduces the radial velocity of isolated filaments. The results are discussed in the context of convective transport in scrape-off layer plasmas, comprising both blob-like structures in low confinement modes and edge localized mode filaments in unstable high confinement regimes. (c) 2006 American Institute...

  2. Radial interchange motions of plasma filaments

    DEFF Research Database (Denmark)

    Garcia, O.E.; Bian, N.H.; Fundamenski, W.

    2006-01-01

    Radial convection of isolated filamentary structures due to interchange motions in magnetized plasmas is investigated. Following a basic discussion of vorticity generation, ballooning, and the role of sheaths, a two-field interchange model is studied by means of numerical simulations...... on a biperiodic domain perpendicular to the magnetic field. It is demonstrated that a blob-like plasma structure develops dipolar vorticity and electrostatic potential fields, resulting in rapid radial acceleration and formation of a steep front and a trailing wake. While the dynamical evolution strongly depends...... as the acoustic speed times the square root of the structure size relative to the length scale of the magnetic field. The plasma filament eventually decelerates due to mixing and collisional dissipation. Finally, the role of sheath dissipation is investigated. When included in the simulations, it significantly...

  3. Controlling multiple filaments by relativistic optical vortex beams in plasmas

    Science.gov (United States)

    Ju, L. B.; Huang, T. W.; Xiao, K. D.; Wu, G. Z.; Yang, S. L.; Li, R.; Yang, Y. C.; Long, T. Y.; Zhang, H.; Wu, S. Z.; Qiao, B.; Ruan, S. C.; Zhou, C. T.

    2016-09-01

    Filamentation dynamics of relativistic optical vortex beams (OVBs) propagating in underdense plasma is investigated. It is shown that OVBs with finite orbital angular momentum (OAM) exhibit much more robust propagation behavior than the standard Gaussian beam. In fact, the growth rate of the azimuthal modulational instability decreases rapidly with increase of the OVB topological charge. Thus, relativistic OVBs can maintain their profiles for significantly longer distances in an underdense plasma before filamentation occurs. It is also found that an OVB would then break up into regular filament patterns due to conservation of the OAM, in contrast to a Gaussian laser beam, which in general experiences random filamentation.

  4. Plasma temperature clamping in filamentation laser induced breakdown spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Harilal, Sivanandan S.; Yeak, J.; Phillips, Mark C.

    2015-10-19

    Ultrafast laser filament induced breakdown spectroscopy is a very promising method for remote material detection. We present characteristics of plasmas generated in a metal target by laser filaments in air. Our measurements show that the temperature of the ablation plasma is clamped along the filamentation channel due to intensity clamping in a filament. Nevertheless, significant changes in radiation intensity are noticeable, and this is essentially due to variation in the number density of emitting atoms. The present results also partly explains the reason for the occurrence of atomic plume during fs LIBS in air compared to long-pulse ns LIBS.

  5. Riemannian geometrical constraints on magnetic vortex filaments in plasmas

    OpenAIRE

    de Andrade, L. C. Garcia

    2005-01-01

    Two theorems on the Riemannian geometrical constraints on vortex magnetic filaments acting as dynamos in (MHD) flows are presented. The use of Gauss-Mainard-Codazzi equations allows us to investigate in detail the influence of curvature and torsion of vortex filaments in the MHD dynamos. This application follows closely previous applications to Heisenberg spin equation to the investigations in magnetohydrostatics given by Schief (Plasma Physics J. 10, 7, 2677 (2003)). The Lorentz force on vor...

  6. Filamentation instability in two counter-streaming laser plasmas

    Science.gov (United States)

    Liu, Hui; Dong, Quan-Li; Yuan, Da-Wei; Liu, Xun; Hua, Neng; Qiao, Zhan-Feng; Zhu, Bao-Qiang; Zhu, Jian-Qiang; Jiang, Bo-Bin; Du, Kai; Tang, Yong-Jian; Zhao, Gang; Yuan, Xiao-Hui; Sheng, Zheng-Ming; Zhang, Jie

    2016-12-01

    The filamentation instability was observed in the interaction of two counter-streaming laser ablated plasma flows, which were supersonic, collisionless, and also closely relevant to astrophysical conditions. The plasma flows were created by irradiating a pair of oppositely standing plastic (CH) foils with 1ns-pulsed laser beams of total energy of 1.7 kJ in two laser spots. With characteristics diagnosed in experiments, the calculated features of Weibel-type filaments are in good agreement with measurements. Project supported by the National Natural Science Foundation of China (Grant Nos. 11074297, 11674146, and 11220101002) and the National Basic Research Program of China (Grant No. 2013CBA01500.

  7. Electromagnetic effects on plasma blob-filament transport

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Wonjae, E-mail: wol023@ucsd.edu [University of California, San Diego, La Jolla, CA (United States); Angus, J.R. [Naval Research Laboratory, Washington, DC (United States); Umansky, Maxim V. [Lawrence Livermore National Laboratory, Livermore, CA (United States); Krasheninnikov, Sergei I. [University of California, San Diego, La Jolla, CA (United States); Nuclear Research National University MEPhI, Moscow 115409 (Russian Federation)

    2015-08-15

    Both microscopic and macroscopic impacts of the electromagnetic effects on blob dynamics are considered. Linear stability analysis and nonlinear BOUT++ simulations demonstrate that electromagnetic effects in high temperature or high beta plasmas suppress the resistive drift wave turbulence in the blob when resistivity drops below a certain value. In the course of blob’s motion in the SOL its temperature is reduced, which leads to enhancement of resistive effects, so the blob can switch from electromagnetic to electrostatic regime, where resistive drift wave turbulence become important. It is found that inhomogeneity of magnetic curvature or plasma pressure along the filament length leads to bending of the high-beta blob filaments. This is caused by the increase of the propagation time of plasma current (Alfvén time) in higher-density plasma. The effects of sheath boundary conditions on the part of the blob away from the boundary are also diminished by the increased Alfvén time.

  8. Plasma dynamics of a laser filamentation-guided spark

    CERN Document Server

    Point, Guillaume; Carbonnel, Jérôme; Mysyrowicz, André; Houard, Aurélien

    2016-01-01

    We investigate experimentally the plasma dynamics of a centimeter-scale, laser filamentation-guided spark discharge. Using electrical and optical diagnostics to study monopolar discharges with varying current pulses we show that plasma decay is dominated by free electron recombination if the current decay time is shorter than the recombination characteristic time. In the opposite case, the plasma electron density closely follows the current evolution. We demonstrate that this criterion holds true in the case of damped AC sparks, and that alternative current is the best option to achieve a long plasma lifetime for a given peak current.

  9. Electron plasma wave filamentation in the kinetic regime

    Science.gov (United States)

    Lushnikov, Pavel; Rose, Harvey; Silantyev, Denis

    2016-10-01

    We consider nonlinear electron plasma wave (EPW) dynamics in the kinetic wavenumber regime, 0.25 Bernstein-Greene-Kruskal (BGK) mode. Transverse perturbations of any of these initial conditions grow with time eventually producing strongly nonlinear filamentation followed by plasma turbulence. We compared these simulations with the theoretical results on growth rates of the transverse instability BGK mode showing the satisfactory agreement. Supported by the New Mexico Consortium and NSF DMS-1412140.

  10. Topology of magnetic helicity of torsioned filaments in Hall plasmas

    CERN Document Server

    de Andrade, L C Garcia

    2007-01-01

    A solution of magnetic Hall equations for plasma filaments in the Coulomb gauge is obtained in the non-holonomic frame. Some physical features of the solution include, the non-conservation of the magnetic helicity and the decay of the magnetic field in the filaments. From the mathematical point of view,the presence of Frenet torsion in the filament is actually shown to be fundamental for the breaking of conservation of magnetic helicity in the case of helicoidal filaments. Since the magnetic helicity is not conserved even in the Coulomb gauge, and the magnetic field decays, one can say that the dynamo action fails. Actually the presence of torsion enhances the breaking of magnetic field helicity conservation. A similar formula of the one obtained here without considering the Hall effect has been obtained by Moffatt and Ricca (PRSA-1992) in the case of holonomic filaments. It is shown that unknotted magnetic filaments may place a lower bound on the magnetic energy. Discussions on the writhe number are also dis...

  11. Current filaments in turbulent magnetized plasmas

    DEFF Research Database (Denmark)

    Martines, E.; Vianello, N.; Sundkvist, D.;

    2009-01-01

    Direct measurements of current density perturbations associated with non-linear phenomena in magnetized plasmas can be carried out using in situ magnetic measurements. In this paper we report such measurements for three different kinds of phenomena. Current density fluctuations in the edge density...... gradient region of a fusion plasma confined in reversed field pinch configuration and in a density gradient region in the Earth magnetosphere are measured and compared, showing that in both environments they can be attributed to drift-Alfvén vortices. Current structures associated with reconnection events...

  12. Measurements of the Motion of Plasma Filaments in a Plasma Ball

    Energy Technology Data Exchange (ETDEWEB)

    Campanell, M.; Laird, J.; Provost, T.; Vasquez, S.; Zweben, S. J.

    2010-01-26

    Measurements were made of the motion of the filamentary structures in a plasma ball using high speed cameras and other optical detectors. These filaments traverse the ball radially at ~106 cm/sec at the driving frequency of ~26 kHz, and drift upward through the ball at ~1 cm/sec. Varying the applied high voltage and frequency caused the number, length, and diameter of the filaments to change. A custom plasma ball was constructed to observe the effects of varying gas pressure and species on the filament structures.

  13. Filamentation Instability of Counterstreaming Laser-Driven Plasmas

    Science.gov (United States)

    Fox, W.; Fiksel, G.; Bhattacharjee, A.; Chang, P.-Y.; Germaschewski, K.; Hu, S. X.; Nilson, P. M.

    2013-11-01

    Filamentation due to the growth of a Weibel-type instability was observed in the interaction of a pair of counterstreaming, ablatively driven plasma flows, in a supersonic, collisionless regime relevant to astrophysical collisionless shocks. The flows were created by irradiating a pair of opposing plastic (CH) foils with 1.8 kJ, 2-ns laser pulses on the OMEGA EP Laser System. Ultrafast laser-driven proton radiography was used to image the Weibel-generated electromagnetic fields. The experimental observations are in good agreement with the analytical theory of the Weibel instability and with particle-in-cell simulations.

  14. Kinetic effects in the transverse filamentation instability of pair plasmas

    Directory of Open Access Journals (Sweden)

    D'Angelo M.

    2015-01-01

    Full Text Available The evolution of the filamentation instability produced by two counter-streaming pair plasmas is studied with particle-in-cell (PIC simulations in both one (1D and two (2D spatial dimensions. Radiation friction effects on particles are taken into account. During the nonlinear stage of the instability, a strong broadening of the particle energy spectrum occurs accompanied by the formation of a peak at twice their initial energy. A simple theory of the peak formation is presented. The presence of radiative losses does not change the dynamics of the instability but affects the structure of the particle spectra.

  15. Numerical simulation of filamentation in laser-plasma interactions

    Energy Technology Data Exchange (ETDEWEB)

    Nicholas, D.J.; Sajjadi, S.G.

    1986-05-14

    Numerical studies of beam filamentation in laser-produced plasma are presented. This involves the numerical solution of the parabolic wave equation, known as the Schroedinger equation, coupled with the thermal transport equations for both ions and electrons, in two dimensions. The solution of the resulting equation with non-linear refractive index due to thermal and pondermotive forces, shows self-focusing and a variety of strong aberration effects. Intensity amplification at the final focus is found to be between one and two orders of magnitude greater than the initial beam intensity, governed in general by diffraction and aberration effects within the beam.

  16. Filamentation instability of counter-streaming laser-driven plasmas

    CERN Document Server

    Fox, W; Bhattacharjee, A; Chang, P -Y; Germaschewski, K; Hu, S X; Nilson, P M

    2013-01-01

    Filamentation due to the growth of a Weibel-type instability was observed in the interaction of a pair of counter-streaming, ablatively-driven plasma flows, in a supersonic, collisionless regime relevant to astrophysical collisionless shocks. The flows were created by irradiating a pair of opposing plastic (CH) foils with 1.8 kJ, 2-ns laser pulses on the OMEGA EP laser system. Ultrafast laser-driven proton radiography was used to image the Weibel-generated electromagnetic fields. The experimental observations are in good agreement with the analytical theory of the Weibel instability and with particle-in-cell simulations.

  17. The Dynamics of an Isolated Plasma Filament at the Edge of a Toroidal Device, Rev. 1

    Energy Technology Data Exchange (ETDEWEB)

    Ryutov, D D

    2006-09-28

    The dynamics of an isolated plasma filament (an isolated blob) in the far scrape-off layer (SOL) of a toroidal device is described, with a proper averaging of the geometrical parameters as well as plasma parameters along the filament. The analysis is limited to the magnetohydrodynamic description. The effects of the anchored ends and finite plasma resistivity are also discussed.

  18. Inertial blob-hole symmetry breaking in magnetised plasma filaments

    CERN Document Server

    Kendl, Alexander

    2015-01-01

    Symmetry breaking between the propagation velocities of magnetised plasma filaments with large positive (blob) and negative (hole) amplitudes, as implied by a dimensional analysis scaling, is studied with global ("full-n") non-Boussinesq gyrofluid computations, which include finite inertia effects through nonlinear polarisation. Interchange blobs on a flat density background have higher inertia and propagate more slowly than holes. In the presence of a large enough density gradient, the effect is reversed: blobs accelerate down the gradient and holes are slowed in their propagation up the gradient. Drift wave blobs spread their initial vorticity rapidly into a fully developed turbulent state, whereas primary holes can remain coherent for many eddy turnover times. The results bear implications for plasma edge zonal flow evolution and tokamak scrape-off-layer transport.

  19. Guiding-center models for edge plasmas and numerical simulations of isolated plasma filaments

    DEFF Research Database (Denmark)

    Madsen, Jens

    The work presented in this thesis falls into two categories: development of reduced dynamical models applicable to edge turbulence in magnetically confined fusion plasmas and numerical simulations of isolated plasma filaments in the scrape-off layer region investigating the influence of finite...... models are presented that overcome some of the difficulties associated with the development of reduced dynamical models applicable to the edge. Second order guiding-center coordinates are derived using the phasespace Lie transform method. Using a variational principle the corresponding Vlasov......-Maxwell equations in a more tractable form, which could be relevant for direct numerical simulations of edge plasma turbulence. Finally, an investigation of the influence of finite Larmor radius effects on the radial transport of isolated plasma filaments (blobs) in the scrape-off region of fusion plasmas...

  20. Amplitude scaling for interchange motions of plasma filaments

    CERN Document Server

    Kube, R; Garcia, O E

    2016-01-01

    We numerically study the interchange motion of seeded plasma blobs in a reduced two-field fluid model. If we neglect the compression of the electric drift in the model, the maximal radial center-of-mass velocity V of the filament follows the familiar square-root scaling V ~ (\\Delta n/N)^1/2, where \\Delta n is the blob amplitude and N is the background density. When including compression of the electric drift to account for an inhomogeneous magnetic field, the numerical simulations reveal that the maximal blob velocity depends linearly on its initial amplitude, V ~ \\Delta n/N. When the relative initial amplitude of the filament exceeds approximately unity we recover the square root velocity scaling. We explain the observed scaling laws in t erms of the conserved energy integrals of the model equations. The compression term leads to a constraint on the maximum kinetic energy of the blob, which is not present if the drift compression is ignored. If the compression term is included, only approximately half of the...

  1. Plasma channels during filamentation of a femtosecond laser pulse with wavefront astigmatism in air

    Energy Technology Data Exchange (ETDEWEB)

    Dergachev, A A; Kandidov, V P; Shlenov, S A [Lomonosov Moscow State University, Faculty of Physics, Moscow (Russian Federation); Ionin, A A; Mokrousova, D V; Seleznev, L V; Sinitsyn, D V; Sunchugasheva, E S; Shustikova, A P [P N Lebedev Physics Institute, Russian Academy of Sciences, Moscow (Russian Federation)

    2014-12-31

    We have demonstrated experimentally and numerically the possibility of controlling parameters of plasma channels formed during filamentation of a femtosecond laser pulse by introducing astigmatism in the laser beam wavefront. It is found that weak astigmatism increases the length of the plasma channel in comparison with the case of aberration-free focusing and that strong astigmatism can cause splitting of the plasma channel into two channels located one after another on the filament axis. (interaction of laser radiation with matter. laser plasma)

  2. Effect of friction on the motion of plasma filaments

    DEFF Research Database (Denmark)

    Garcia, Odd Erik; Madsen, Jens; Naulin, Volker

    is influenced by the collisional friction with the neutral gas fluid. In magnetically confined plasmas, the motion of filamentary structures in the edge region can be influenced by parallel dynamics in a manner that resembles an effective friction. In the presence of strong ballooning, such a frictional...... response may take place in both the electrostatic and the electromagnetic regimes. Results are presented from two-dimensional numerical simulations of an isolated blob structure in a non-uniform magnetic field [1,2]. The effect of a linear damping term in the vorticity equation, which describes...... an effective friction, is investigated. In the inertial regime the radial filament velocity scales as the square root of its size. In the limit of strong friction regime the velocity scales as the inverse of the structure size. A discussion of these results will be given in the context of irregularities...

  3. Effect of an energy reservoir on the atmospheric propagation of laser-plasma filaments.

    Science.gov (United States)

    Eisenmann, Shmuel; Peñano, Joseph; Sprangle, Phillip; Zigler, Arie

    2008-04-18

    The ability to select and stabilize a single filament during propagation of an ultrashort, high-intensity laser pulse in air makes it possible to examine the longitudinal structure of the plasma channel left in its wake. We present the first detailed measurements and numerical 3-D simulations of the longitudinal plasma density variation in a laser-plasma filament after it passes through an iris that blocks the surrounding energy reservoir. Since no compensation is available from the surrounding background energy, filament propagation is terminated after a few centimeters. For this experiment, simulations indicate that filament propagation is terminated by plasma defocusing and ionization loss, which reduces the pulse power below the effective self-focusing power. With no blockage, a plasma filament length of over a few meters was observed.

  4. Transfer of microwave energy along a filament plasma column in air

    Science.gov (United States)

    Prade, B.; Houard, A.; Larour, J.; Pellet, M.; Mysyrowicz, A.

    2017-01-01

    We demonstrate the coupling of microwave radiation into a plasma channel formed by laser filamentation in air, leading to the amplification by two orders of magnitude of longitudinal oscillations of the plasma. Transfer of this longitudinal excitation toward unexcited region of the plasma column occurs over >10 cm, in good agreement with a theoretical model describing the propagation of a TM wave guided along the surface between air and plasma. We foresee that high-power low-frequency electromagnetic waves injected into a multi-filament plasma could initiate and sustain a long-lived plasma over several meters distance.

  5. Filamentation instability of current-driven dust ion-acoustic waves in a collisional dusty plasma

    Energy Technology Data Exchange (ETDEWEB)

    Niknam, A. R. [Laser and Plasma Research Institute, Shahid Beheshti University, G.C., Tehran 19839-63113 (Iran, Islamic Republic of); Haghtalab, T.; Khorashadizadeh, S. M. [Physics Department, Birjand University, Birjand 97179-63384 (Iran, Islamic Republic of)

    2011-11-15

    A theoretical investigation has been made of the dust ion-acoustic filamentation instability in an unmagnetized current-driven dusty plasma by using the Lorentz transformation formulas. The effect of collision between the charged particles with neutrals and their thermal motion on this instability is considered. Developing the filamentation instability of the current-driven dust ion-acoustic wave allows us to determine the period and the establishment time of the filamentation structure and threshold for instability development.

  6. Stimulated electromagnetic terahertz emissions (SEE) from laser-induced plasma filaments

    Science.gov (United States)

    Isham, Brett; Kunhardt, Erich

    2016-07-01

    Advances in terawatt laser technology have made it possible to ionize the troposphere in long (centimeters to kilometers), narrow (less than 1 mm), wire-like plasma filaments. These filaments emit high-power stimulated electromagnetic emissions (SEE) at terahertz (submillimeter) frequencies, a frontier in the electromagnetic spectrum lying between the microwave and far infrared bands. Using an accepted model for the plasma oscillations in the filament and a thin-wire approximation, we have calculated the current density and the resulting pattern of terahertz radiation emitted by the filament. The conical shape and opening angle of the calculated radiation pattern match those of recent measurements. Future work could include measurements of both the radiation pattern and of the frequency spectrum, for comparison with detailed calculations of filament plasma processes. Potential applications include high-resolution imaging and remote spectroscopic identification of chemical substances.

  7. Current-vortex filament model of nonlinear Alfven perturbations in a finite-pressure plasma

    NARCIS (Netherlands)

    Lakhin, V. P.; Schep, T. J.; Westerhof, E.

    1998-01-01

    A low-beta, two-fluid model is shown to possess solutions in the form of current-vortex filaments. The model can be viewed as that of reduced magnetohydrodynamics, extended with electron inertia, the Hall term and parallel electron pressure. These drift-Alfven filaments are the plasma analogs of poi

  8. Space- and time-resolved observation of single filaments propagation in an underdense plasma and of beam coupling between neighbouring filaments

    Energy Technology Data Exchange (ETDEWEB)

    Fuchs, J [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France); Nakatsutsumi, M [Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka 565-0871 (Japan); Marques, J-R [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France); Antici, P [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France); Bourgeois, N [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France); Grech, M [CELIA, UMR 5107 Universite Bordeaux 1-CNRS-CEA, 33405 Talence Cedex (France); Lin, T [Fox Chase Cancer Center, Philadephia, PA 19111-2497 (United States); Romagnani, L [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France); Tikhonchuk, V [CELIA, UMR 5107 Universite Bordeaux 1-CNRS-CEA, 33405 Talence Cedex (France); Weber, S [CELIA, UMR 5107 Universite Bordeaux 1-CNRS-CEA, 33405 Talence Cedex (France); Kodama, R [Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka 565-0871 (Japan); Audebert, P [LULI, Ecole Polytechnique, CNRS, CEA, UPMC, Route de Saclay, 91128 Palaiseau (France)

    2007-12-15

    We have performed a systematic study of beam propagation (400 ps, I = 10{sup 10}-10{sup 14} W cm{sup -2}) in underdense plasmas (n{sub e} = 10{sup 19}-10{sup 20} cm{sup -3}) at a level of reduced complexity compared with the smoothed beams currently used in inertial confinement fusion studies, using one or two well-controlled filaments. These experiments have been performed on the LULI 100 TW laser facility. The use of well-controlled, diffraction-limited single filaments is possibly due to the use of adaptative optics. We have used either a single filament or two filaments having variable distance, delay, intensity ratio and polarization. The single filament configuration allows to study basic beam propagation and reveals occurrence of filamentation at low intensity levels. The use of two filaments demonstrates the occurrence of beam coupling and merging, and the importance of cross-talk effects supported by the plasma.

  9. Dynamics of Molecular Emission Features from Nanosecond, Femtosecond Laser and Filament Ablation Plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Harilal, Sivanandan S.; Yeak, J.; Brumfield, Brian E.; Suter, Jonathan D.; Phillips, Mark C.

    2016-06-15

    The evolutionary paths of molecular species and nanoparticles in laser ablation plumes are not well understood due to the complexity of numerous physical processes that occur simultaneously in a transient laser-plasma system. It is well known that the emission features of ions, atoms, molecules and nanoparticles in a laser ablation plume strongly depend on the laser irradiation conditions. In this letter we report the temporal emission features of AlO molecules in plasmas generated using a nanosecond laser, a femtosecond laser and filaments generated from a femtosecond laser. Our results show that, at a fixed laser energy, the persistence of AlO is found to be highest and lowest in ns and filament laser plasmas respectively while molecular species are formed at early times for both ultrashort pulse (fs and filament) generated plasmas. Analysis of the AlO emission band features show that the vibrational temperature of AlO decays rapidly in filament assisted laser ablation plumes.

  10. Filamentation due to the Weibel Instability in two counterstreaming laser ablated plasmas

    Science.gov (United States)

    Dong, Quan-Li; Yuan, Dawei; Gao, Lan; Liu, Xun; Chen, Yangao; Jia, Qing; Hua, Neng; Qiao, Zhanfeng; Chen, Ming; Zhu, Baoqiang; Zhu, Jianqiang; Zhao, Gang; Ji, Hantao; Sheng, Zheng-Ming; Zhang, Jie

    2016-05-01

    Weibel-type filamentation instability was observed in the interaction of two counter streaming laser ablated plasma flows, which were supersonic, collisionless, and closely relevant to astrophysical conditions. The plasma flows were created by irradiating a pair of oppositely standing plastic (CH) foils with 1ns-pulsed laser beams of total energy of 1.7 kJ in two laser spots. With characteristics diagnosed in experiments, the calculated features of Weibel-type filaments are in good agreement with measurements.

  11. Guiding-center models for edge plasmas and numerical simulations of isolated plasma filaments

    Energy Technology Data Exchange (ETDEWEB)

    Madsen, Jens

    2010-09-15

    The work presented in this thesis falls into two categories: development of reduced dynamical models applicable to edge turbulence in magnetically confined fusion plasmas and numerical simulations of isolated plasma filaments in the scrape-off layer region investigating the influence of finite Larmor radius effects on the radial plasma transport. The coexistence of low-frequency fluctuations, having length scales comparable to the ion gyroradius, steep pressure gradients and strong E x B flows in the edge region of fusion plasmas violates the standard gyrokinetic ordering. In this thesis two models are presented that overcome some of the difficulties associated with the development of reduced dynamical models applicable to the edge. Second order guiding-center coordinates are derived using the phasespace Lie transform method. Using a variational principle the corresponding Vlasov-Maxwell equations expressed in guiding-center coordinates are derived including a local energy theorem. The second order terms describe lowest order finite Larmor radius effects. This set of equations might be relevant for edge plasmas due to the capability of capturing strong E x B flows and lowest order finite Larmor radius effects self-consistently. Next, an extension of the existing gyrokinetic formalism with strong flows is presented. In this work the background electric fields is dynamical, whereas earlier contributions did only incorporate a stationary electric field. In an ordering relevant for edge plasma turbulence, fully electromagnetic second order gyrokinetic coordinates and the corresponding gyrokinetic Vlasov-Maxwell equations are derived, including a local energy theorem. By taking the polarization and magnetization densities in the drift kinetic limit, we present the gyrokinetic Vlasov-Maxwell equations in a more tractable form, which could be relevant for direct numerical simulations of edge plasma turbulence. Finally, an investigation of the influence of finite Larmor

  12. Filamentation instability of nonextensive current-driven plasma in the ion acoustic frequency range

    Energy Technology Data Exchange (ETDEWEB)

    Khorashadizadeh, S. M., E-mail: smkhorashadi@birjand.ac.ir; Rastbood, E. [Physics Department of Birjand University, Birjand (Iran, Islamic Republic of); Niknam, A. R., E-mail: a-niknam@sbu.ac.ir [Laser and Plasma Research Institute, Shahid Beheshti University, G.C., Tehran (Iran, Islamic Republic of)

    2014-12-15

    The filamentation and ion acoustic instabilities of nonextensive current-driven plasma in the ion acoustic frequency range have been studied using the Lorentz transformation formulas. Based on the kinetic theory, the possibility of filamentation instability and its growth rate as well as the ion acoustic instability have been investigated. The results of the research show that the possibility and growth rate of these instabilities are significantly dependent on the electron nonextensive parameter and drift velocity. Besides, the increase of electrons nonextensive parameter and drift velocity lead to the increase of the growth rates of both instabilities. In addition, the wavelength region in which the filamentation instability occurs is more stretched in the presence of higher values of drift velocity and nonextensive parameter. Finally, the results of filamentation and ion acoustic instabilities have been compared and the conditions for filamentation instability to be dominant mode of instability have been presented.

  13. RUI: Structure and Behavior of RF-Driven Plasma Filaments in High-Pressure Gases

    Energy Technology Data Exchange (ETDEWEB)

    Burin, Michael J. [California State Univ., San Marcos, CA (United States)

    2014-11-18

    The filamentary discharge seen within commercial plasma globes is commonly enjoyed, yet not well understood. We investigate filament properties in a plasma globe using a variable high voltage amplifier. Results from the 3-year grant period and their physics are discussed.

  14. Robustness of the filamentation instability for asymmetric plasma shells collision in arbitrarily oriented magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Bret, A. [ETSI Industriales, Universidad de Castilla-La Mancha, 13071 Ciudad Real, Spain and Instituto de Investigaciones Energticas y Aplicaciones Industriales, Campus Universitario de Ciudad Real, 13071 Ciudad Real (Spain)

    2013-10-15

    The filamentation instability triggered when two counter streaming plasma shells overlap appears to be the main mechanism by which collisionless shocks are generated. It has been known for long that a flow aligned magnetic field can completely suppress this instability. In a recent paper [Phys. Plasmas 18, 080706 (2011)], it was demonstrated in two dimensions that for the case of two cold, symmetric, relativistically colliding shells, such cancellation cannot occur if the field is not perfectly aligned. Here, this result is extended to the case of two asymmetric shells. The filamentation instability appears therefore as an increasingly robust mechanism to generate shocks.

  15. L-mode filament characteristics on MAST as a function of plasma current measured using visible imaging

    CERN Document Server

    Kirk, A; Harrison, J R; Militello, F; Walkden, N R

    2016-01-01

    Clear filamentary structures are observed at the edge of tokamak plasmas. These filaments are ejected out radially and carry plasma in the far Scrape Off Layer (SOL) region, where they are responsible for producing most of the transport. A study has been performed of the characteristics of the filaments observed in L-mode plasma on MAST, using visible imaging. A comparison has then been made with the observed particle and power profiles obtained at the divertor as a function of the plasma current. The radial velocity and to a lesser extent the radial size of the filaments are found to decrease as the plasma current is increased at constant density and input power. The results obtained in this paper on the dependence of the average filament dynamics on plasma current are consistent with the idea that the filaments are responsible for determining the particle profiles at the divertor.

  16. The Origin of Solar Filament Plasma Inferred from In Situ Observations of Elemental Abundances

    Science.gov (United States)

    Song, H. Q.; Chen, Y.; Li, B.; Li, L. P.; Zhao, L.; He, J. S.; Duan, D.; Cheng, X.; Zhang, J.

    2017-02-01

    Solar filaments/prominences are one of the most common features in the corona, which may lead to energetic coronal mass ejections (CMEs) and flares when they erupt. Filaments are about 100 times cooler and denser than the coronal material, and physical understanding of their material origin remains controversial. Two types of scenarios have been proposed: one argues that the filament plasma is brought into the corona from photosphere or chromosphere through a siphon or evaporation/injection process, while the other suggests that the material condenses from the surrounding coronal plasma due to thermal instability. The elemental abundance analysis is a reasonable clue to constrain the models, as the siphon or evaporation/injection model would predict that the filament material abundances are close to the photospheric or chromospheric ones, while the condensation model should have coronal abundances. In this Letter, we analyze the elemental abundances of a magnetic cloud that contains the ejected filament material. The corresponding filament eruption occurred on 1998 April 29, accompanying an M6.8 class soft X-ray flare located at the heliographic coordinates S18E20 (NOAA 08210) and a fast halo CME with the linear velocity of 1374 km s‑1 near the Sun. We find that the abundance ratios of elements with low and high first ionization potential such as Fe/O, Mg/O, and Si/O are 0.150, 0.050, and 0.070, respectively, approaching their corresponding photospheric values 0.065, 0.081, and 0.066, which does not support the coronal origin of the filament plasma.

  17. Kinetic theory of the filamentation instability in a collisional current-driven plasma with nonextensive distribution

    Energy Technology Data Exchange (ETDEWEB)

    Khorashadizadeh, S. M., E-mail: smkhorashadi@birjand.ac.ir; Rastbood, E. [Physics Department, University of Birjand, Birjand 97179-63384 (Iran, Islamic Republic of); Niknam, A. R. [Laser and Plasma Research Institute, Shahid Beheshti University, G.C., Tehran 19839-63113 (Iran, Islamic Republic of)

    2015-07-15

    The evolution of filamentation instability in a weakly ionized current-carrying plasma with nonextensive distribution was studied in the diffusion frequency region, taking into account the effects of electron-neutral collisions. Using the kinetic theory, Lorentz transformation formulas, and Bhatnagar-Gross-Krook collision model, the generalized dielectric permittivity functions of this plasma system were achieved. By obtaining the dispersion relation of low-frequency waves, the possibility of filamentation instability and its growth rate were investigated. It was shown that collisions can increase the maximum growth rate of instability. The analysis of temporal evolution of filamentation instability revealed that the growth rate of instability increased by increasing the q-parameter and electron drift velocity. Finally, the results of Maxwellian and q-nonextensive velocity distributions were compared and discussed.

  18. Nano-droplet ejection and nucleation of materials submitted to non-thermal plasma filaments

    Science.gov (United States)

    Borra, J.-P.; Jidenko, N.; Dutouquet, C.; Aguerre, O.; Hou, J.; Weber, A.

    2011-11-01

    Methods to induce non-thermal atmospheric pressure plasma filaments are presented with related properties for micro, streamer and prevented spark discharges, respectively, induced in planar Dielectric Barrier Discharges with one electrode covered by dielectric material (mono-DBD) or point-to-plane Corona. Two mechanisms of nano-particles formation are depicted from aerosol size distributions and TEM analysis. 0.1-10 mJ prevented spark discharges produce 10-100 nm droplets ejected from melted craters as well as nucleated primary particles and subsequent 10-100 nm agglomerates, by nucleation and coagulation in expanding vapor jets. With smaller energy per filament, 0.1-10 μJ micro-discharges and 0.1-100 μJ streamers, the initial local vapor fluxes emitted from spots of interaction between plasma filaments and electrodes are reduced. Subsequent smaller primary particle density limits the local coagulation in the vapor plume since 2-10 nm non-agglomerated crystalline metal nano-particles are produced in mono-DBD with Au, Ag and Cu electrode. Besides, the evolution of the aerosol size from primary nano-particles to agglomerates with transit time suggests slow coagulation of these primary metal particles in mono-DBD. Aerosol properties depend on the energy per filament and on the electrode. The final size is controlled by plasma parameters and transit time in and after the plasma. The aim is to underline emerging applications of atmospheric pressure plasmas for the production of tailored particles with tunable size, composition and structure with non-thermal plasma filaments to control the resulting properties of nano-powders and materials. Production rates and related energetic yields are compared.

  19. Effect of high-power laser divergence on the plasma structural parameters during multiple filamentation in air

    Science.gov (United States)

    Geints, Yu. E.; Zemlyanov, A. A.

    2016-06-01

    Multiple filamentation of an infrared high-power laser pulse in air is considered. Based on the numerical solution to the unidirectional pulse propagation equation, the effect of radiation external focusing on the spatial structure of the plasma area produced in the filamentation region is studied. We show that the number of generated plasma channels in the beam wake and the density of their spatial distribution over the filamentation region depend on the initial divergence of laser radiation. We found that in a specific range of beam focusing the number of produced plasma channels could be minimized due to the formation of a consolidated thick plasma bunch at the beam axis.

  20. Formation of current filaments and magnetic field generation in a quantum current-carrying plasma

    Energy Technology Data Exchange (ETDEWEB)

    Niknam, A. R. [Laser and Plasma Research Institute, Shahid Beheshti University, G.C., Tehran (Iran, Islamic Republic of); Taghadosi, M. R.; Majedi, S.; Khorashadizadeh, S. M. [Physics Department, University of Birjand, Birjand (Iran, Islamic Republic of)

    2013-09-15

    The nonlinear dynamics of filamentation instability and magnetic field in a current-carrying plasma is investigated in the presence of quantum effects using the quantum hydrodynamic model. A new nonlinear partial differential equation is obtained for the spatiotemporal evolution of the magnetic field in the diffusion regime. This equation is solved by applying the Adomian decomposition method, and then the profiles of magnetic field and electron density are plotted. It is shown that the saturation time of filamentation instability increases and, consequently, the instability growth rate and the magnetic field amplitude decrease in the presence of quantum effects.

  1. The influence of finite Larmor radius effects on the radial interchange motions of plasma filaments

    DEFF Research Database (Denmark)

    Madsen, Jens; Garcia, Odd E.; Larsen, Jeppe Stærk

    2011-01-01

    The influence of finite Larmor radius (FLR) effects on the perpendicular convection of isolated particle density filaments driven by interchange motions in magnetized plasmas is investigated using a two-moment gyrofluid model. By means of numerical simulations on a two-dimensional, bi-periodic do......The influence of finite Larmor radius (FLR) effects on the perpendicular convection of isolated particle density filaments driven by interchange motions in magnetized plasmas is investigated using a two-moment gyrofluid model. By means of numerical simulations on a two-dimensional, bi....... Due to FLR effects, the poloidal up-down symmetry in the particle density field observed in the zero Larmor radius limit is broken. The symmetry breaking implies a poloidal motion of the blobs in the BrB direction. At later times, the direction of the poloidal motion is reversed when the blob...

  2. Experimental validation of a filament transport model in turbulent magnetized plasmas

    CERN Document Server

    Carralero, D; Aho-Mantila, L; Birkenmeier, G; Brix, M; Groth, M; Müller, H W; Stroth, U; Vianello, N; Wolfrum, E; Contributors, JET

    2015-01-01

    In a wide variety of natural and laboratory magnetized plasmas, filaments appear as a result of interchange instability. These convective structures substantially enhance transport in the direction perpendicular to the magnetic field. According to filament models, their propagation may follow different regimes depending on the parallel closure of charge conservation. This is of paramount importance in magnetic fusion plasmas, as high collisionality in the scrape-off layer may trigger a regime transition leading to strongly enhanced perpendicular particle fluxes. This work reports for the first time on an experimental verification of this process, linking enhanced transport with a regime transition as predicted by models. Based on these results, a novel scaling for global perpendicular particle transport in reactor relevant tokamaks such as ASDEX-Upgrade and JET is found, leading to important implications for next generation fusion devices.

  3. Amplification of 126 nm femtosecond seed pulses in optical-field-induced Ar plasma filamentation

    Science.gov (United States)

    Kubodera, Shoichi; Deshimaru, Naoyuki; Kaku, Masanori; Katto, Masahito

    2014-10-01

    We have observed amplification of femtosecond (fs) VUV coherent seed beam at 126 nm by utilizing an optical-field-induced ionization (OFI) high-pressure Ar plasma filamentation. We have produced a low-temperature and high-density Ar plasma filamentation inside a high-pressure Ar cell by irradiating a high-intensity laser with an intensity of approximately 1014 W cm-2. Argon excimer molecules (Ar2*) as an amplifier medium were produced inside the high-pressure cell and were used to amplify a weak VUV ultrashort seed pulse at 126 nm, which was generated by harmonic generation of another short pulse infrared laser at 882 nm. We have measured the amplification characteristics and the OFI plasma diagnosis by utilizing the fs VUV pulses at 126 and 882 nm, respectively. The maximum optical gain value of 1.1 cm-1 was observed. Temporal behaviors of the plasma temperature and density in the nano-second time scale indicated a high-density and low-temperature plasma produced by using the OFI. These plasma behaviors were utilized to reproduce the optical amplification characteristics with our OFI excimer simulation code.

  4. Shock Formation by Plasma Filaments of Microwave Discharge under Atmospheric Pressure

    Science.gov (United States)

    Takahashi, Masayuki; Ohnishi, Naofumi

    2016-03-01

    A one-dimensional compressible fluid calculation was coupled with a finite- difference time-domain code and a particle-in-cell code with collision to reproduce propagation of electromagnetic wave, ionization process of plasma, and shock wave formation in atmospheric microwave discharge. Plasma filaments are driven toward the microwave source at 1 atm, and the distance between each filament is one-fifth of the wavelength of the incident microwave. The strong shock wave is generated due to the high plasma density at the atmospheric pressure. A simple analysis of the microwave propagation into the plasma shows that cut-off density of the microwave becomes smaller with the pressure decrease in a collisional plasma. At the lower pressure, the smaller density plasma is obtained with a diffusive pattern because of the smaller cut-off density and the larger diffusion effect. In contrast with the 1-atm case, the weak shock wave is generated at a rarefied condition, which lowers performance of microwave thruster.

  5. The extreme nonlinear optics of gases and femtosecond optical/plasma filamentation

    Science.gov (United States)

    Milchberg, Howard

    2013-10-01

    Under certain conditions, powerful ultrashort laser pulses can form greatly extended filaments of concentrated high intensity in gases, leaving behind a very long trail of plasma. Such filaments can be much longer than the longitudinal scale over which a laser beam typically diverges by diffraction. Applications range from laser-guided electrical discharges to remote sensing. Air is a medium of particular interest for applications, and as a mostly molecular gas it is interesting from a physics perspective as well. I will work through the fundamentals of filamentation and give an overview of the field. Understanding in detail the microscopic processes leading to filamentation requires fundamental measurements of the strong field nonlinear response of gas phase atoms and molecules with unprecedented precision in space and time. This includes absolute, ultrafast measurements of nonlinear laser-induced polarization and high field ionization. I will describe how such measurements are done and show how they can be applied to propagation experiments. Work supported by the Air Force Office of Scientific Research, the Office of Naval Research, the National Science Foundation, and the US Dept. of Energy.

  6. PIC simulations of the trapped electron filamentation instability in finite-width electron plasma waves

    Science.gov (United States)

    Winjum, B. J.; Banks, J. W.; Berger, R. L.; Cohen, B. I.; Chapman, T.; Hittinger, J. A. F.; Rozmus, W.; Strozzi, D. J.; Brunner, S.

    2012-10-01

    We present results on the kinetic filamentation of finite-width nonlinear electron plasma waves (EPW). Using 2D simulations with the PIC code BEPS, we excite a traveling EPW with a Gaussian transverse profile and a wavenumber k0λDe= 1/3. The transverse wavenumber spectrum broadens during transverse EPW localization for small width (but sufficiently large amplitude) waves, while the spectrum narrows to a dominant k as the initial EPW width increases to the plane-wave limit. For large EPW widths, filaments can grow and destroy the wave coherence before transverse localization destroys the wave; the filaments in turn evolve individually as self-focusing EPWs. Additionally, a transverse electric field develops that affects trapped electrons, and a beam-like distribution of untrapped electrons develops between filaments and on the sides of a localizing EPW. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the Laboratory Research and Development Program at LLNL under project tracking code 12-ERD-061. Supported also under Grants DE-FG52-09NA29552 and NSF-Phy-0904039. Simulations were performed on UCLA's Hoffman2 and NERSC's Hopper.

  7. Collisional effects on the current-filamentation instability in a dense plasma

    Institute of Scientific and Technical Information of China (English)

    HAO Biao; SHENG Zheng-Ming; ZHANG Jie

    2009-01-01

    The collisional current-filamentation instability (CFI) is studied for a nonrelativistic electron beampenetrating an infinite uniform plasma.It is analytically shown that the CFI is driven by the drift-anisotropyrather than the classical anisotropy of the beam and the background plasma.Therefore,collisional effects can either attenuate or enhance the CFI depending on the drift-anisotropy of the beam-plasma system.Numerical results are given for some typical parameters,which show that collisional effects cannot stabilize but enhance the CFI in a dense plasma.Thus,the CFI may play a dominant role in the fast electron transport and deposition relevant to the fast ignition scenario(FIS).

  8. Langmuir wave filamentation in the kinetic regime. II. Weak and strong pumping of nonlinear electron plasma waves as the route to filamentation

    Science.gov (United States)

    Silantyev, Denis A.; Lushnikov, Pavel M.; Rose, Harvey A.

    2017-04-01

    We consider two kinds of pumped Langmuir waves (LWs) in the kinetic regime, k λ D ≳ 0.2 , where k is the LW wavenumber and λD is the Debye length, driven to finite amplitude by a coherent external potential whose amplitude is either weak or strong. These dynamically prepared nonlinear LWs develop a transverse (filamentation) instability whose nonlinear evolution destroys the LW's transverse coherence. Instability growth rates in the weakly pumped regime are the same as those of Bernstein-Greene-Kruskal modes considered in Part I (D. A. Silantyev et al., Phys. Plasmas 24, 042104 (2017)), while strongly pumped LWs have higher filamentation grow rates.

  9. Particle acceleration and radiation friction effects in the filamentation instability of pair plasmas

    CERN Document Server

    D'Angelo, M; Sgattoni, A; Pegoraro, F; Macchi, A

    2015-01-01

    The evolution of the filamentation instability produced by two counter-streaming pair plasmas is studied with particle-in-cell (PIC) simulations in both one (1D) and two (2D) spatial dimensions. Radiation friction effects on particles are taken into account. After an exponential growth of both the magnetic field and the current density, a nonlinear quasi-stationary phase sets up characterized by filaments of opposite currents. During the nonlinear stage, a strong broadening of the particle energy spectrum occurs accompanied by the formation of a peak at twice their initial energy. A simple theory of the peak formation is presented. The presence of radiative losses does not change the dynamics of the instability but affects the structure of the particle spectra.

  10. Development of Energy Efficient, Multi-Channel, Pulsed Plasma Generator for High-Speed Flow Control by Localized Arc Filament Plasma Actuators Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The research team at The Ohio State University has been developing technologies to suppress jet noise using localized arc filament plasma actuators and are in the...

  11. Temperature dynamics and velocity scaling laws for interchange driven, warm ion plasma filaments

    Science.gov (United States)

    Olsen, Jeppe; Madsen, Jens; Nielsen, Anders Henry; Rasmussen, Jens Juul; Naulin, Volker

    2016-04-01

    The influence of electron and ion temperature dynamics on the radial convection of isolated structures in magnetically confined plasmas is investigated by means of numerical simulations. It is demonstrated that the maximum radial velocity of these plasma blobs roughly follows the inertial velocity scaling, which is proportional to the ion acoustic speed times the square root of the filament particle density times the sum of the electron and ion temperature perturbations. Only for small blobs the cross field convection does not follow this scaling. The influence of finite Larmor radius effects on the cross-field blob convection is shown not to depend strongly on the dynamical ion temperature field. The blob dynamics of constant finite and dynamical ion temperature blobs is similar. When the blob size is on the order of 10 times the ion Larmor radius the blobs stay coherent and decelerate slowly compared to larger blobs which dissipate faster due to fragmentation and turbulent mixing.

  12. Filamentation in Laser Wakefields

    Science.gov (United States)

    Los, Eva; Trines, Raoul; Silva, Luis; Bingham, Robert

    2016-10-01

    Laser filamentation instability is observed in plasma wakefields with sub-critical densities, and in high density inertial fusion plasmas. This leads to non-uniform acceleration or compression respectively. Here, we present simulation results on laser filamentation in plasma wakefields. The 2-D simulations are carried out using the particle-in-cell code Osiris. The filament intensity was found to increase exponentially before saturating. The maximum amplitude to which the highest intensity filament grew for a specific set of parameters was also recorded, and plotted against a corresponding parameter value. Clear, positively correlated linear trends were established between plasma density, transverse wavenumber k, laser pulse amplitude and maximum filament amplitude. Plasma density and maximum filament amplitude also showed a positive correlation, which saturated after a certain plasma density. Pulse duration and interaction length did not affect either filament intensity or transverse k value in a predictable manner. There was no discernible trend between pulse amplitude and filament width.

  13. Levitation and collection of diamond fine particles in the rf plasma chamber equipped with a hot filament

    Energy Technology Data Exchange (ETDEWEB)

    Shimizu, S.; Shimizu, T.; Thomas, H. M.; Morfill, G. E. [Max-Planck-Institut fuer extraterrestrische Physik, Giessenbachstrasse, D-85748 Garching (Germany); Jacob, W. [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Boltzmannstrasse 2, D-85748 Garching (Germany)

    2011-11-15

    We demonstrate the levitation of diamond fine particles in a H{sub 2} rf plasma chamber equipped with a hot filament and heated electrodes. The levitation conditions should be carefully chosen to compensate the strong thermophoretic forces caused by the filament and the electrodes. This levitation technique with the existence of a hot filament can be applied, e.g., for the efficient growth of diamond layers on seed particles injected and levitated in an rf plasma with reactive gases, e.g., CH{sub 4}/H{sub 2}. Additionally, the method for direct capture of levitated particles on a planar substrate was established, which is useful if it is necessary to analyze the particles after the levitation.

  14. Towards Real-Time Detection and Tracking of Blob-Filaments in Fusion Plasma Big Data

    CERN Document Server

    Wu, Lingfei; Sim, Alex; Churchill, Michael; Choi, Jong Y; Stathopoulos, Andreas; Chang, Cs; Klasky, Scott

    2015-01-01

    Magnetic fusion could provide an inexhaustible, clean, and safe solution to the global energy needs. The success of magnetically-confined fusion reactors demands steady-state plasma confinement which is challenged by the blob-filaments driven by the edge turbulence. Real-time analysis can be used to monitor the progress of fusion experiments and prevent catastrophic events. However, terabytes of data are generated over short time periods in fusion experiments. Timely access to and analyzing this amount of data demands properly responding to extreme scale computing and big data challenges. In this paper, we apply outlier detection techniques to effectively tackle the fusion blob detection problem on extremely large parallel machines. We present a real-time region outlier detection algorithm to efficiently find blobs in fusion experiments and simulations. In addition, we propose an efficient scheme to track the movement of region outliers over time. We have implemented our algorithms with hybrid MPI/OpenMP and ...

  15. Nitric oxide kinetics in the afterglow of a diffuse plasma filament

    Science.gov (United States)

    Burnette, D.; Montello, A.; Adamovich, I. V.; Lempert, W. R.

    2014-08-01

    A suite of laser diagnostics is used to study kinetics of vibrational energy transfer and plasma chemical reactions in a nanosecond pulse, diffuse filament electric discharge and afterglow in N2 and dry air at 100 Torr. Laser-induced fluorescence of NO and two-photon absorption laser-induced fluorescence of O and N atoms are used to measure absolute, time-resolved number densities of these species after the discharge pulse, and picosecond coherent anti-Stokes Raman spectroscopy is used to measure time-resolved rotational temperature and ground electronic state N2(v = 0-4) vibrational level populations. The plasma filament diameter, determined from plasma emission and NO planar laser-induced fluorescence images, remains nearly constant after the discharge pulse, over a few hundred microseconds, and does not exhibit expansion on microsecond time scale. Peak temperature in the discharge and the afterglow is low, T ≈ 370 K, in spite of significant vibrational nonequilibrium, with peak N2 vibrational temperature of Tv ≈ 2000 K. Significant vibrational temperature rise in the afterglow is likely caused by the downward N2-N2 vibration-vibration (V-V) energy transfer. Simple kinetic modeling of time-resolved N, O, and NO number densities in the afterglow, on the time scale longer compared to relaxation and quenching time of excited species generated in the plasma, is in good agreement with the data. In nitrogen, the N atom density after the discharge pulse is controlled by three-body recombination and radial diffusion. In air, N, NO and O concentrations are dominated by the reverse Zel'dovich reaction, N + NO → N2 + O, and ozone formation reaction, O + O2 + M → O3 + M, respectively. The effect of vibrationally excited nitrogen molecules and excited N atoms on NO formation kinetics is estimated to be negligible. The results suggest that NO formation in the nanosecond pulse discharge is dominated by reactions of excited electronic states of nitrogen, occurring on

  16. Helical filaments

    Energy Technology Data Exchange (ETDEWEB)

    Barbieri, Nicholas; Lim, Khan; Durand, Magali; Baudelet, Matthieu; Richardson, Martin [Townes Laser Institute, CREOL—The College of Optics and Photonics, University of Central Florida, Orlando, Florida 32816 (United States); Hosseinimakarem, Zahra; Johnson, Eric [Micro-Photonics Laboratory – Center for Optical Material Science, Clemson, Anderson, South Carolina 29634 (United States)

    2014-06-30

    The shaping of laser-induced filamenting plasma channels into helical structures by guiding the process with a non-diffracting beam is demonstrated. This was achieved using a Bessel beam superposition to control the phase of an ultrafast laser beam possessing intensities sufficient to induce Kerr effect driven non-linear self-focusing. Several experimental methods were used to characterize the resulting beams and confirm the observed structures are laser air filaments.

  17. Dielectric barrier discharges: progress on plasma sources and on the understanding of regimes and single filaments

    Science.gov (United States)

    Brandenburg, Ronny

    2017-05-01

    Dielectric barrier discharges (DBDs) are plasmas generated in configurations with an insulating (dielectric) material between the electrodes which is responsible for a self-pulsing operation. DBDs are a typical example of nonthermal atmospheric or normal pressure gas discharges. Initially used for the generation of ozone, they have opened up many other fields of application. Therefore DBDs are a relevant tool in current plasma technology as well as an object for fundamental studies. Another motivation for further research is the fact that so-called partial discharges in insulated high voltage systems are special types of DBDs. The breakdown processes, the formation of structures, and the role of surface processes are currently under investigation. This review is intended to give an update to the already existing literature on DBDs considering the research and development within the last two decades. The main principles and different modes of discharge generation are summarized. A collection of known as well as special electrode configurations and reactor designs will be presented. This shall demonstrate the different and broad possibilities, but also the similarities and common aspects of devices for different fields of applications explored within the last years. The main part is devoted to the progress on the investigation of different aspects of breakdown and plasma formation with the focus on single filaments or microdischarges. This includes a summary of the current knowledge on the electrical characterization of filamentary DBDs. In particular, the recent new insights on the elementary volume and surface memory mechanisms in these discharges will be discussed. An outlook for the forthcoming challenges on research and development will be given.

  18. On the control of filamentation of intense laser beams propagating in underdense plasma

    Energy Technology Data Exchange (ETDEWEB)

    Williams, E A

    2005-10-21

    In indirect drive ICF ignition designs, the laser energy is delivered into the hohlraum through the laser entrance holes (LEH), which are sized as small as practicable to minimize X-ray radiation losses. On the other hand, deleterious laser plasma processes, such as filamentation and stimulated back-scatter, typically increase with laser intensity. Ideally, therefore, the laser spot shape should be a close fit to the LEH, with uniform (envelope) intensity in the spot and minimal energy at larger radii spilling onto the LEH material. This keeps the laser intensity as low as possible consistent with the area of the LEH aperture and the power requirements of the design. This can be achieved (at least for apertures significantly larger than the laser's aberrated focal spot) by the use of custom-designed phase plates. However, outfitting the 192 beam (National Ignition facility) NIF laser with multiple sets of phase plates optimized for a variety of different LEH aperture sizes is an expensive proposition. It is thus important to assess the impact on laser-plasma interaction processes of using phase plates with a smaller than optimum focal spot (or even no phase plates at all!) and then de-focusing the beam to expand it to fill the LEH and lower its intensity. We find significant effects from the lack of uniformity of the laser envelope out of the focal plane, from changes in the characteristic sizes of the laser speckle, and on the efficacy of additional polarization and/or SSD beam smoothing. We quantify these effects with analytic estimates and simulations using our laser plasma interaction code pF3D.

  19. Three dimensional simulations of plasma filaments in the scrape off layer

    DEFF Research Database (Denmark)

    Easy, L.; Militello, F.; Omotani, J.

    2014-01-01

    This paper presents simulations of isolated 3D filaments in a slab geometry obtained using a newly developed 3D reduced fluid code, written using the BOUT++ framework. First, systematic scans were performed to investigate how the dynamics of a filament are affected by its amplitude, perpendicular...

  20. Photoelectron Emission from Metal Surfaces Induced by VUV-emission of Filament Driven Hydrogen Arc Discharge Plasma

    CERN Document Server

    Laulainen, J; Koivisto, H; Komppula, J; Tarvainen, O

    2015-01-01

    Photoelectron emission measurements have been performed using a filament-driven multi-cusp arc discharge volume production H^- ion source (LIISA). It has been found that photoelectron currents obtained with Al, Cu, Mo, Ta and stainless steel (SAE 304) are on the same order of magnitude. The photoelectron currents depend linearly on the discharge power. It is shown experimentally that photoelectron emission is significant only in the short wavelength range of hydrogen spectrum due to the energy dependence of the quantum efficiency. It is estimated from the measured data that the maximum photoelectron flux from plasma chamber walls is on the order of 1 A per kW of discharge power.

  1. Photoelectron emission from metal surfaces induced by VUV-emission of filament driven hydrogen arc discharge plasma

    Science.gov (United States)

    Laulainen, J.; Kalvas, T.; Koivisto, H.; Komppula, J.; Tarvainen, O.

    2015-04-01

    Photoelectron emission measurements have been performed using a filament-driven multi-cusp arc discharge volume production H- ion source (LIISA). It has been found that photoelectron currents obtained with Al, Cu, Mo, Ta and stainless steel (SAE 304) are on the same order of magnitude. The photoelectron currents depend linearly on the discharge power. It is shown experimentally that photoelectron emission is significant only in the short wavelength range of hydrogen spectrum due to the energy dependence of the quantum efficiency. It is estimated from the measured data that the maximum photoelectron flux from plasma chamber walls is on the order of 1 A per kW of discharge power.

  2. Plasma filamentation and shock wave enhancement in microwave rockets by combining low-frequency microwaves with external magnetic field

    Science.gov (United States)

    Takahashi, Masayuki; Ohnishi, Naofumi

    2016-08-01

    A filamentary plasma is reproduced based on a fully kinetic model of electron and ion transports coupled with electromagnetic wave propagation. The discharge plasma transits from discrete to diffusive patterns at a 110-GHz breakdown, with decrease in the ambient pressure, because of the rapid electron diffusion that occurs during an increase in the propagation speed of the ionization front. A discrete plasma is obtained at low pressures when a low-frequency microwave is irradiated because the ionization process becomes more dominant than the electron diffusion, when the electrons are effectively heated by the low-frequency microwave. The propagation speed of the plasma increases with decrease in the incident microwave frequency because of the higher ionization frequency and faster plasma diffusion resulting from the increase in the energy-absorption rate. An external magnetic field is applied to the breakdown volume, which induces plasma filamentation at lower pressures because the electron diffusion is suppressed by the magnetic field. The thrust performance of a microwave rocket is improved by the magnetic fields corresponding to the electron cyclotron resonance (ECR) and its higher-harmonic heating, because slower propagation of the ionization front and larger energy-absorption rates are obtained at lower pressures. It would be advantageous if the fundamental mode of ECR heating is coupled with a lower frequency microwave instead of combining the higher-harmonic ECR heating with the higher frequency microwave. This can improve the thrust performance with smaller magnetic fields even if the propagation speed increases because of the decrease in the incident microwave frequency.

  3. Joule-heating-supported plasma filamentation and branching during subcritical microwave irradiation

    Science.gov (United States)

    Takahashi, Masayuki; Kageyama, Yoshiaki; Ohnishi, Naofumi

    2017-05-01

    Breakdown physics induced by a subcritical microwave was numerically reproduced by using a two-dimensional effective diffusion model for plasma transport and combining it with Maxwell's equations and a neutral gas dynamics equation. A discrete plasma structure was obtained when E0,rms/Ec ≧0.69 , where E0,rms is the root-mean-square of the incident electric field and Ec is the breakdown threshold, because an overcritical field that exceeded the breakdown threshold was formed in a region away from the bulk plasma by the wave reflection when the plasma reflectivity was increased by joule heating. However, a continuous plasma structure with a branching pattern was formed when E0,rms/Ec <0.69 because the enhanced electric-field region away from the bulk plasma never exceeded the breakdown threshold even when the plasma reflectivity increased. The propagation speed of the plasma front drastically decreased when E0,rms/Ec <0.69 because the plasma propagation was sustained by strong gas expansion, which required more time than wave-reflection and ionization processes.

  4. Photoelectron emission from metal surfaces induced by VUV-emission of filament driven hydrogen arc discharge plasma

    Energy Technology Data Exchange (ETDEWEB)

    Laulainen, J.; Kalvas, T.; Koivisto, H.; Komppula, J.; Tarvainen, O. [University of Jyväskylä, Department of Physics (Finland)

    2015-04-08

    Photoelectron emission measurements have been performed using a filament-driven multi-cusp arc discharge volume production H{sup −} ion source (LIISA). It has been found that photoelectron currents obtained with Al, Cu, Mo, Ta and stainless steel (SAE 304) are on the same order of magnitude. The photoelectron currents depend linearly on the discharge power. It is shown experimentally that photoelectron emission is significant only in the short wavelength range of hydrogen spectrum due to the energy dependence of the quantum efficiency. It is estimated from the measured data that the maximum photoelectron flux from plasma chamber walls is on the order of 1 A per kW of discharge power.

  5. Temperature dynamics and velocity scaling laws for interchange driven, warm ion plasma filaments

    DEFF Research Database (Denmark)

    Olsen, Jeppe Miki Busk; Madsen, Jens; Nielsen, Anders Henry

    2016-01-01

    The influence of electron and ion temperature dynamics on the radial convection of isolated structures in magnetically confined plasmas is investigated by means of numerical simulations. It is demonstrated that the maximum radial velocity of these plasma blobs roughly follows the inertial velocit...

  6. A comparative study of the filamentation and two-stream instabilities in weakly relativistic counter-streaming plasmas

    Science.gov (United States)

    Ghorbanalilu, M.; Sadegzadeh, S.

    2017-01-01

    Counter-streaming plasma structures are ubiquitous in astrophysical sources of non-thermal radiations. We discuss the dispersion properties and the stability of this non-thermal particle distribution, which is modeled on the basis of the relativistic Jüttner-Maxwell distribution function in the correct laboratory frame of reference. In this work, we aim to construct analytical solutions of the dispersion relations and investigate the properties of the growth rate of the filamentation and two-stream instabilities in an unmagnetized and homogeneous counter-propagating plasma. The Maxwell and the relativistic Vlasov equations are used to derive the covariant dispersion relations that are valid in any (conveniently chosen) reference frame. Aperiodic solutions ( ℜ(ω)≃0 ) to the covariant dispersion relations of the growing modes ( ℑ(ω)>0 ) are demonstrated with the aid of analytical calculations. The dependence of the growth rate on the normalized bulk velocity β0=V0/c and thermal parameter μ=m c2/KBT is shown in graphic illustrations. We found that for both kinds of instabilities, growth rates are decreased by increasing the temperature and decreasing the bulk velocity. Therefore, the electrons at sufficiently low temperatures and with relativistic streams are capable of increasing the range of unstable wave numbers and consequently prevent the instability to cease at small wave numbers. The results indicate that under the same condition and in contrast to the non-relativistic regime, the filamentation instability has the largest growth rate and the electrostatic two-stream instability is in the next place.

  7. Langmuir wave filamentation in the kinetic regime. II. Weak and Strong Pumping of Nonlinear Electron Plasma Waves as the Route to Filamentation

    CERN Document Server

    Silantyev, Denis A; Rose, Harvey A

    2016-01-01

    We consider two kinds of pumped Langmuir waves (LWs) in the kinetic regime, $k\\lambda_D\\gtrsim0.2,$ where $k$ is the LW wavenumber and $\\lambda_D$ is the Debye length. They are driven to finite amplitude by a coherent external potential whose amplitude is either weak or strong. These dynamically prepared nonlinear LWs develop a transverse (filamentation) instability whose nonlinear evolution destroys the LW's transverse coherence. Instability growth rates in the weakly pumped regime are the same as those of BGK modes considered in Part I, while strongly pumped LWs have higher filamentation grow rates.

  8. Formation of filament and plasma channel by the Bessel incident beam in Ar gas: role of the outer part of the beam.

    Science.gov (United States)

    Song, Zhenming; Nakajima, Takashi

    2010-06-07

    We theoretically investigate the formation of filament and plasma channel in Ar gas by intense femtosecond pulses in the Bessel, truncated Bessel, and combination of two Gaussian modes. Through the numerical results obtained by solving the generalized nonlinear Schrödinger equation coupled with the electron density evolution equation, we find that there is a radial energy flow during the propagation, which implies that the outer part of the Bessel beam serves as an energy reservoir for the filament formed around the central peak. The results we obtain for the Bessel and truncated Bessel incident beams are consistent in that we can obtain a longer filament and plasma channel if more energy is reserved in the outer part of the Bessel incident beam. More interestingly we show that the combined use of two Gaussian beams with different beam diameters increases the energy stored in the outer part of the beam, and as a result the lengths of the filament and plasma channel become remarkably longer. This can be a practical choice to improve the propagation properties.

  9. Laser-guided energetic discharges over large air gaps by electric-field enhanced plasma filaments

    Science.gov (United States)

    Théberge, Francis; Daigle, Jean-François; Kieffer, Jean-Claude; Vidal, François; Châteauneuf , Marc

    2017-01-01

    Recent works on plasma channels produced during the propagation of ultrashort and intense laser pulses in air demonstrated the guiding of electric discharges along the laser path. However, the short plasma lifetime limits the length of the laser-guided discharge. In this paper, the conductivity and lifetime of long plasma channels produced by ultrashort laser pulses is enhanced efficiently over many orders of magnitude by the electric field of a hybrid AC-DC high-voltage source. The AC electric pulse from a Tesla coil allowed to stimulate and maintain the highly conductive channel during few milliseconds in order to guide a subsequent 500 times more energetic discharge from a 30-kV DC source. This DC discharge was laser-guided over an air gap length of two metres, which is more than two orders of magnitude longer than the expected natural discharge length. Long plasma channel induced by laser pulses and stimulated by an external high-voltage source opens the way for wireless and efficient transportation of energetic current pulses over long air gaps and potentially for guiding lightning. PMID:28053312

  10. Laser-guided energetic discharges over large air gaps by electric-field enhanced plasma filaments

    Science.gov (United States)

    Théberge, Francis; Daigle, Jean-François; Kieffer, Jean-Claude; Vidal, François; Châteauneuf, Marc

    2017-01-01

    Recent works on plasma channels produced during the propagation of ultrashort and intense laser pulses in air demonstrated the guiding of electric discharges along the laser path. However, the short plasma lifetime limits the length of the laser-guided discharge. In this paper, the conductivity and lifetime of long plasma channels produced by ultrashort laser pulses is enhanced efficiently over many orders of magnitude by the electric field of a hybrid AC-DC high-voltage source. The AC electric pulse from a Tesla coil allowed to stimulate and maintain the highly conductive channel during few milliseconds in order to guide a subsequent 500 times more energetic discharge from a 30-kV DC source. This DC discharge was laser-guided over an air gap length of two metres, which is more than two orders of magnitude longer than the expected natural discharge length. Long plasma channel induced by laser pulses and stimulated by an external high-voltage source opens the way for wireless and efficient transportation of energetic current pulses over long air gaps and potentially for guiding lightning.

  11. Current filamentation model for the Weibel/Filamentation instabilities

    Science.gov (United States)

    Ryu, Chang-Mo; Huynh, Cong Tuan; Kim, Chul Min

    2016-10-01

    A current filamentaion model for a nonrelativistic plasma with e +/e- beam has been presented together with PIC simulations, which can explain the mangetic field enhancement during the Weibel/ Filamentation instabilities. This filament model assumes the Hammer-Rostoker equilibrium. In addition, this model predicts preferential acceleration/deceleration for electron-ion plasmas depending on the injected beam to be e +/e-.

  12. Kilometer range filamentation

    OpenAIRE

    Durand, Magali; Houard, Aurélien; Prade, Bernard; Mysyrowicz, André; Durécu, Anne; Moreau, Bernard; Fleury, Didier; Vasseur, Olivier; Borchert, Hartmut; Diener, Karsten; Schmitt, Rudiger; Théberge, Francis; Chateauneuf, Marc; Daigle, Jean-François; Dubois, Jacques

    2013-01-01

    International audience; We demonstrate for the first time the possibility to generate long plasma channels up to a distance of 1 km, using the terawatt femtosecond T&T laser facility. The plasma density was optimized by adjusting the chirp, the focusing and beam diameter. The interaction of filaments with transparent and opaque targets was studied.

  13. 3D Simulations of Plasma Filaments in the Scrape Off Layer: A Comparison with Models of Reduced Dimensionality

    CERN Document Server

    Easy, Luke; Omotani, John; Dudson, Benjamin; Havlíčková, Eva; Tamain, Patrick; Naulin, Volker; Nielsen, Anders H

    2014-01-01

    This paper presents simulations of isolated 3D filaments in a slab geometry obtained using a 3D reduced fluid code. First, systematic scans were performed to investigate how the dynamics of a filament are affected by its amplitude, perpendicular size and parallel extent. The perpendicular size of the filament was found to have a strong influence on its motions, as it determined the relative importance of parallel currents to polarisation and viscous currents, whilst drift-wave instabilities were observed if the initial amplitude of the blob was increased sufficiently. Next, the 3D simulations were compared to 2D simulations using different parallel closures; namely, the sheath dissipation closure, which neglects parallel gradients, and the vorticity advection closure, which neglects the influence of parallel currents. The vorticity advection closure was found to not replicate the 3D perpendicular dynamics and overestimated the initial radial acceleration of all the filaments studied. In contrast, a more satis...

  14. Marshall N. Rosenbluth Outstanding Doctoral Thesis Award Talk: The Ultrafast Nonlinear Response of Air Molecules and its Effect on Femtosecond Laser Plasma Filaments in Atmosphere

    Science.gov (United States)

    Chen, Yu-Hsin

    2012-10-01

    When exceeding the critical power Pcr, an intense laser pulse propagating in a gas collapses into one or multiple ``filaments,'' which can extend meters in length with weakly ionized plasma and local intensity ˜ 10^13 W/cm^2 radially confined in a diameter of < 100 μm [1]. While it has been generally accepted the nonlinear self-focusing of the laser pulse leading to beam collapse is stabilized by plasma generation [2], neither the field-induced nonlinearity nor the plasma generation had been directly measured. This uncertainty has given rise to recent controversy about whether plasma generation does indeed counteract the positive nonlinearity [3, 4]. For even a basic understanding of femtosecond filamentation and for applications, the focusing and defocusing mechanisms---nonlinear self-focusing and ionization---must be understood. By employing a single-shot, time-resolved technique based on spectral interferometry [5] to study the constituents of air, it is found that the rotational responses in O2 and N2 are the dominant nonlinear effect in filamentary propagation when the laser pulse duration is longer than ˜ 100fs. Furthermore, we find that the instantaneous nonlinearity scales linearly up to the ionization threshold [6], eliminating any possibility of an ionization-free negative stabilization [3] of filamentation. This is confirmed by space-resolved electron density measurements in meter-long filaments produced with different pulse durations, using optical interferometry with a grazing-incidence, ps-delayed probe [7].[4pt] [1] A. Braun et al., Opt. Lett. 20, 73 (1995).[0pt] [2] A. Couairon and A. Mysyrowicz, Phys. Rep. 441, 47 (2007).[0pt] [3] V. Loriot et al., Opt. Express 17, 13429 (2009).[0pt] [4] P. B'ejot et al., Phys. Rev. Lett. 104, 103903 (2010).[0pt] [5] Y.-H. Chen et al., Opt. Express 15, 7458 (2007); Opt. Express 15, 11341 (2007).[0pt] [6] J. K. Wahlstrand et al., Phys. Rev. Lett. 107, 103901 (2011).[0pt] [7] Y.-H. Chen et al., Phys. Rev. Lett

  15. Oriented carbon nanostructures grown by hot-filament plasma-enhanced CVD from self-assembled Co-based catalyst on Si substrates

    Science.gov (United States)

    Fleaca, Claudiu Teodor; Morjan, Ion; Rodica, Alexandrescu; Dumitrache, Florian; Soare, Iuliana; Gavrila-Florescu, Lavinia; Sandu, Ion; Dutu, Elena; Le Normand, François; Faerber, Jacques

    2012-03-01

    We report the synthesis of coral- and caterpillar-like carbon nanostructures assemblies starting from cobalt nitrate ethanol solutions deposited by drop-casting onto blank or carbon nanoparticles film covered Si(1 0 0) substrates. The seeded films were pre-treated with glow discharge hydrogen plasma aided by hot-filaments at 550 °C followed by introduction of acetylene at 700 °C. The resultant carbon nanostructure assemblies contain a high density of aligned carbon nanotubes/nanofibers (CNTs/CNFs). The influence of the forces that act during liquid-mediated self-assembly of Co catalyst precursor is discussed.

  16. Origin of graphitic filaments on improving the electron field emission properties of negative bias-enhanced grown ultrananocrystalline diamond films in CH4/Ar plasma

    Science.gov (United States)

    Sankaran, K. J.; Huang, B. R.; Saravanan, A.; Tai, N. H.; Lin, I. N.

    2014-10-01

    Microstructural evolution of bias-enhanced grown (BEG) ultrananocrystalline diamond (UNCD) films has been investigated using microwave plasma enhanced chemical vapor deposition in gas mixtures of CH4 and Ar under different negative bias voltages ranging from -50 to -200 V. Scanning electron microscopy and Raman spectroscopy were used to characterize the morphology, growth rate, and chemical bonding of the synthesized films. Transmission electron microscopic investigation reveals that the application of bias voltage induced the formation of the nanographitic filaments in the grain boundaries of the films, in addition to the reduction of the size of diamond grains to ultra-nanosized granular structured grains. For BEG-UNCD films under -200 V, the electron field emission (EFE) process can be turned on at a field as small as 4.08 V/μm, attaining a EFE current density as large as 3.19 mA/cm2 at an applied field of 8.64 V/μm. But the films grown without bias (0 V) have mostly amorphous carbon phases in the grain boundaries, possessing poorer EFE than those of the films grown using bias. Consequently, the induction of nanographitic filaments in grain boundaries of UNCD films grown in CH4/Ar plasma due to large applied bias voltage of -200 V is the prime factor, which possibly forms interconnected paths for facilitating the transport of electrons that markedly enhance the EFE properties.

  17. Cross-field motion of plasma blob-filaments and related particle flux in an open magnetic field line configuration on QUEST

    Energy Technology Data Exchange (ETDEWEB)

    Liu, H.Q., E-mail: hqliu@ipp.ac.cn [Institute of Plasma Physics, Chinese Academy of Sciences, Hefei, Anhui 230031 (China); Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, Kasuga, Fukuoka 8168580 (Japan); Hanada, K. [Research Institute for Applied Mechanics, Kyushu University, Kasuga, Fukuoka 8168580 (Japan); Nishino, N. [Graduate School of Engineering, Hiroshima University, Hiroshima 7398511 (Japan); Ogata, R.; Ishiguro, M. [Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, Kasuga, Fukuoka 8168580 (Japan); Gao, X. [Institute of Plasma Physics, Chinese Academy of Sciences, Hefei, Anhui 230031 (China); Zushi, H.; Nakamura, K.; Fujisawa, A.; Idei, H.; Hasegawa, M. [Research Institute for Applied Mechanics, Kyushu University, Kasuga, Fukuoka 8168580 (Japan)

    2013-07-15

    Blob-filaments have been observed by combined measurement with a fast camera and a movable Langmuir probe in an open magnetic field line configuration of electron cyclotron resonance (ECR) heating plasma in QUEST. Blob-filaments extended along field lines do correspond to over-dense plasma structures and propagated across the field lines to the outer wall. The radial velocity of the blob structure, V{sub b}, was obtained by three methods and was dominantly driven by the E × B force. The radial velocity, size of the blob showed good agreements with the results obtained by sheath-connected interchange theoretical model. V{sub b} corresponds to roughly 0.02–0.07 of the local sound speed (C{sub s}) in QUEST. The higher moments (skewness S and kurtosis K) representing the shape of PDF of density fluctuation are studied. Their least squares fitting with quadratic polynomial is K = (1.60 ± 0.27)S{sup 2} − (0.46 ± 0.20). The larger blob structures, occurring only 10% of the time, can carry more than 60% loss of the entire radial particle flux.

  18. Remote electrical arc suppression by laser filamentation

    CERN Document Server

    Schubert, Elise; Kasparian, Jérôme; Wolf, Jean-Pierre

    2015-01-01

    We investigate the interaction of narrow plasma channels formed in the filamentation of ultrashort laser pulses, with a DC high voltage. The laser filaments prevent electrical arcs by triggering corona that neutralize the high-voltage electrodes. This phenomenon, due to the electric field modulation and free electron release around the filament, opens new prospects to lightning and over-voltage mitigation.

  19. The interaction between plasma filaments in dielectric barrier discharges and liquid covered wounds: electric fields delivered to model platelets and cells

    Science.gov (United States)

    Babaeva, Natalia Yu; Tian, Wei; Kushner, Mark J.

    2014-06-01

    The treatment of wounds by atmospheric pressure plasmas in the context of plasma medicine typically proceeds through a liquid layer covering exposed cells. The wounds and their liquid covering often have irregular shapes with electrical properties (i.e. conductivity and permittivities) that may differ not only from wound-to-wound but also for a single wound as healing proceeds. The differing shapes and electrical properties extend into the liquid within the wound that typically contains cellular materials such as blood platelets. The plasma, wound, liquid and intra-liquid cellular components represent an interacting system of mutual dependence. In this paper, we discuss the results from a computational investigation of the treatment of small, liquid-covered wounds by filamentary dielectric barrier discharges. The sizes of the wounds are of the order of the plasma filaments and the liquid within the wound, an approximation of blood serum, contains idealized blood platelets. We find that the electrical properties of a wound can have significant effects on the spreading of the plasma on its surface by virtue of the deformation of the vacuum electric fields due to the shape, the effective capacitance of the wound and the discontinuities in electrical permittivity. This in turn effects the penetration of the electric field to cells under the liquid. The orientation and permittivity of the platelets relative to the liquid determines the electric fields that may stimulate the platelets.

  20. Methylenetetrahydrofolate Reductase Activity Is Involved in the Plasma Membrane Redox System Required for Pigment Biosynthesis in Filamentous Fungi

    DEFF Research Database (Denmark)

    Frandsen, Rasmus John Normand; Albertsen, K.S.; Stougaard, P.

    2010-01-01

    Methylenetetrahydrofolate reductases (MTHFRs) play a key role in biosynthesis of methionine and S-adenosyl-L-methionine (SAM) via the recharging methionine biosynthetic pathway. Analysis of 32 complete fungal genomes showed that fungi were unique among eukaryotes by having two MTHFRs, MET12 and M...... are the first to show that MET13, in addition to its function in methionine biosynthesis, is required for the generation of the extracellular reduction potential necessary for pigment production in filamentous fungi....

  1. Phytoplasma infection in tomato is associated with re-organization of plasma membrane, ER stacks and actin filaments in sieve elements

    Directory of Open Access Journals (Sweden)

    Stefanie Vera Buxa

    2015-08-01

    Full Text Available Phytoplasmas, biotrophic wall-less prokaryotes, only reside in sieve elements of their host plants. The essentials of the intimate interaction between phytoplasmas and their hosts are poorly understood, which calls for research on potential ultrastructural modifications. We investigated modifications of the sieve-element ultrastructure induced in tomato plants by ‘Candidatus Phytoplasma solani’, the pathogen associated with the stolbur disease. Phytoplasma infection induces a drastic re-organization of sieve-element substructures including changes in plasma membrane surface and distortion of the sieve-element reticulum. Observations of healthy and stolbur-diseased plants provided evidence for the emergence of structural links between sieve-element plasma membrane and phytoplasmas. One-sided actin aggregates on the phytoplasma surface also inferred a connection between phytoplasma and sieve-element cytoskeleton. Actin filaments displaced from the sieve-element mictoplasm to the surface of the phytoplasmas in infected sieve elements. Expression analysis revealed a decrease of actin and an increase of ER-resident chaperone luminal binding protein (BiP in midribs of phytoplasma-infected plants. Collectively, the studies provided novel insights into ultrastructural responses of host sieve elements to phloem-restricted prokaryotes.

  2. Multi-dimensional Vlasov simulations and modeling of trapped-electron-driven filamentation of electron plasma waves

    Energy Technology Data Exchange (ETDEWEB)

    Berger, R. L., E-mail: berger5@llnl.gov; Cohen, B. I. [Lawrence Livermore National Laboratory, University of California, P.O. Box 808, Livermore, California 94551 (United States); Brunner, S., E-mail: stephan.brunner@epfl.ch [Centre de Recherches en Physique des Plasmas, Association Euratom-Confédération Suisse, Ecole Polytechnique Fédérale de Lausanne, CRPP-PPB, CH-1015 Lausanne (Switzerland); Banks, J. W. [Department of Mathematical Sciences, Rensselaer Polytechnic Institute, AE 301, 110 8th Street, Troy, New York 12180 (United States); Winjum, B. J. [Department of Electrical Engineering, University of California, Los Angeles, California 90095 (United States)

    2015-05-15

    Kinetic simulations of two-dimensional finite-amplitude electron plasma waves are performed in a one-wavelength long system. A systematic study of the most unstable linear sideband mode, in particular its growth rate γ and wavenumber k{sub y}, is carried out by scanning the amplitude and wavenumber of the initial wave. Simulation results are compared with numerical and analytical solutions to a two-dimensional nonlinear Schrödinger model [H. A. Rose and L. Yin, Phys. Plasmas 15, 042311 (2008)] and to the reduced model by Kruer et al. [Phys. Rev. Lett. 23, 838 (1969)] generalized to two dimensions.

  3. The effects of transverse plasma flow on laser beam deflection and of ultra-intense laser beam filamentation on channel formation

    Science.gov (United States)

    Hinkel, D. E.

    1997-11-01

    Recent experiments conducted at Lawrence Livermore National Laboratory (LLNL) with the Nova and Janus lasers demonstrate deflection of the laser beam in plasma with flow transverse to the beam. In gas-filled hohlraum experiments(S. G. Glendinning et al.), the laser spot on the hohlraum wall is ~ 100 μm closer to the laser entrance hole (LEH) than in empty hohlraum experiments, which degrades drive symmetry. In a series of exploding foil experiments(J. D. Moody et al.), Phys. Rev. Lett. 77, 1294 (1996)., intensity dependent deflection of the transmitted beam is observed, and interferometric measurements of laser-produced channels in preformed plasma(P. E. Young et al.), to be submitted to Phys. Rev. Lett., 1997. show beam deflection in the presence of near-sonic transverse flow. Theoretical analysis(D. E. Hinkel et al.), Phys. Rev. Lett. 77, 1298 (1996). yields simple scaling laws for the formation of ponderomotively (or thermally) created density depressions downstream from the laser beam's high intensity regions, into which the light is refracted. An integrated approach that utilizes plasma parameters from the hydrocode Lasnex, detailed knowledge of the beam structure, and plasma physics analysis and modelling with F3D(R. L. Berger et al.), Phys. Fluids B 5, 2243 (1993)., has been used to develop a predictive capability that successfully quantifies the amount of beam deflection occurring in experiments. Related physics of beam self-focussing and filamentation is of relevance to the Fast Ignitor(M. Tabak et al.), Phys. Plasmas 1, 1626 (1994).. In channeling experiments performed on the 100 TW laser at LLNL, the f/3 laser beam, which has a 15 μm waist at best focus, has intensities in excess of IL = 1 × 10^17 W/cm^2. Modelling of these high intensity experiments indicates that channel formation occurs over a wide range of cone angles for an idealized (Gaussian) beam. However, when beam structure is taken into consideration, channel formation in the underdense

  4. Spectral stability of Alfven filament configurations

    NARCIS (Netherlands)

    Bergmans, J.; Kuvshinov, B. N.; Lakhin, V. P.; Schep, T. J.

    2000-01-01

    The two-fluid plasma equations that describe nonlinear Alfven perturbations have singular solutions in the form of current-vortex filaments. These filaments are analogous to point vortices in ideal hydrodynamics and geostrophic fluids. In this work the spectral (linear) stability of current-vortex f

  5. Interferometric radar observations of filamented structures due to plasma instabilities and their relation to dynamic auroral rays

    Directory of Open Access Journals (Sweden)

    T. Grydeland

    2004-04-01

    -electron two-stream mechanism favoured by many authors is an unlikely candidate to explain the observations. The video data has helped establish a clear correlation between the enhanced echoes and auroral activity, on sub-second time scales, showing a threshold connection between the auroral intensity and the triggering of the radar enhancements. It appears that the up- and down-shifted enhanced echoes correlate with fine auroral structures in different ways.

    Key words. Ionosphere (auroral ionosphere; plasma waves and instabilities – Radio science (interferometry

  6. Triggering filamentation using turbulence

    CERN Document Server

    Eeltink, D; Marchiando, N; Hermelin, S; Gateau, J; Brunetti, M; Wolf, J P; Kasparian, J

    2016-01-01

    We study the triggering of single filaments due to turbulence in the beam path for a laser of power below the filamenting threshold. Turbulence can act as a switch between the beam not filamenting and producing single filaments. This 'positive' effect of turbulence on the filament probability, combined with our observation of off-axis filaments suggests the underlying mechanism is modulation instability caused by transverse perturbations. We hereby experimentally explore the interaction of modulation instability and turbulence, commonly associated with multiple-filaments, in the single-filament regime.

  7. Ni-catalysed carbon nanotubes and nanofibers assemblies grown on TiN/Si(1 0 0) substrates using hot-filaments combined with d.c. plasma CVD

    Science.gov (United States)

    Fleaca, Claudiu Teodor; Le Normand, François

    2014-02-01

    Different carbon nanotubes or nanofibers (CNTs or CNFs) assemblies were obtained using Ni catalyst deposited by Pulsed Laser Deposition (PLD) on TiN/Si(1 0 0) substrate from a H2/C2H2 mixture using plasma emerging from triode configured electrodes with two pairs of intercalated incandescent filaments at 1 kPa and 700 °C. In the presence of a relative intense plasma (54 W power), a dense CNT carpet was grown. The TEM images revealed the presence of elongated yet contorted 10-15 nm diameter CNTs with encapsulated Ni particles at their tips. Using a low plasma power (8 W) in similar conditions and from the same catalyst, a different morphology resulted: few self-sustained long fibrils (diameter around 1 μm) which are curved under the action of their own weight containing compacted CNTs/CNFs and (only in the confined zones near the lateral edges) 50-200 nm thick filaments presenting buds-like structures and Y-shape junctions.

  8. Solar Filaments as Tracers of Subsurface Processes

    Indian Academy of Sciences (India)

    D. M. Rust

    2000-09-01

    Solar filaments are discussed in terms of two contrasting paradigms. The standard paradigm is that filaments are formed by condensation of coronal plasma into magnetic fields that are twisted or dimpled as a consequence of motions of the fields' sources in the photo-sphere. According to a new paradigm, filaments form in rising, twisted flux ropes and are a necessary intermediate stage in the transfer to interplanetary space of dynamo-generated magnetic flux. It is argued that the accumulation of magnetic helicity in filaments and their coronal surroundings leads to filament eruptions and coronal mass ejections. These ejections relieve the Sun of the flux generated by the dynamo and make way for the flux of the next cycle.

  9. Picosecond laser filamentation in air

    Science.gov (United States)

    Schmitt-Sody, Andreas; Kurz, Heiko G.; Bergé, Luc; Skupin, Stefan; Polynkin, Pavel

    2016-09-01

    The propagation of intense picosecond laser pulses in air in the presence of strong nonlinear self-action effects and air ionization is investigated experimentally and numerically. The model used for numerical analysis is based on the nonlinear propagator for the optical field coupled to the rate equations for the production of various ionic species and plasma temperature. Our results show that the phenomenon of plasma-driven intensity clamping, which has been paramount in femtosecond laser filamentation, holds for picosecond pulses. Furthermore, the temporal pulse distortions in the picosecond regime are limited and the pulse fluence is also clamped. In focused propagation geometry, a unique feature of picosecond filamentation is the production of a broad, fully ionized air channel, continuous both longitudinally and transversely, which may be instrumental for many applications including laser-guided electrical breakdown of air, channeling microwave beams and air lasing.

  10. Picosecond laser filamentation in air

    CERN Document Server

    Schmitt-Sody, Andreas; Bergé, L; Skupin, S; Polynkin, Pavel

    2016-01-01

    The propagation of intense picosecond laser pulses in air in the presence of strong nonlinear self-action effects and air ionization is investigated experimentally and numerically. The model used for numerical analysis is based on the nonlinear propagator for the optical field coupled with the rate equations for the production of various ionic species and plasma temperature. Our results show that the phenomenon of plasma-driven intensity clamping, which is paramount in femtosecond laser filamentation, holds for picosecond pulses. Furthermore, the temporal pulse distortions are limited and the pulse fluence is also clamped. The resulting unique feature of the picosecond filamentation regime is the production of a broad, fully ionized air channel, continuous both longitudinally and transversely, which may be instrumental for numerous applications.

  11. Interaction of Two Filament Channels of Different Chiralities

    CERN Document Server

    Joshi, Navin Chandra; Schmieder, Brigitte; Magara, Tetsuya; Moon, Young-Jae; Uddin, Wahab

    2016-01-01

    We present observations of interactions between the two filament channels of different chiralities and associated dynamics that occurred during 2014 April 18 -- 20. While two flux ropes of different helicity with parallel axial magnetic fields can only undergo a bounce interaction when they are brought together, the observations at the first glance show that the heated plasma is moving from one filament channel to the other. The SDO/AIA 171 A observations and the PFSS magnetic field extrapolation reveal the presence of fan-spine magnetic configuration over the filament channels with a null point located above them. Three different events of filament activations, partial eruptions, and associated filament channel interactions have been observed. The activation initiated in one filament channel seems to propagate along the neighbour filament channel. We believe that the activation and partial eruption of the filaments bring the field lines of flux ropes containing them closer to the null point and trigger the m...

  12. A Statistical Study of Solar Filament Eruptions

    Science.gov (United States)

    Schanche, Nicole; Aggarwal, Ashna; Reeves, Kathy; Kempton, Dustin James; Angryk, Rafal

    2016-05-01

    Solar filaments are cool, dark channels of partially-ionized plasma that lie above the chromosphere. Their structure follows the neutral line between local regions of opposite magnetic polarity. Previous research (e.g. Schmieder et al. 2013, McCauley et al. 2015) has shown a positive correlation (70-80%) between the occurrence of filament eruptions and coronal mass ejections (CME’s). In this study, we attempt to use properties of the filament in order to predict whether or not a given filament will erupt. This prediction would help to better predict the occurrence of an oncoming CME. To track the evolution of a filament over time, a spatio-temporal algorithm that groups separate filament instances from the Heliophysics Event Knowledgebase (HEK) into filament tracks was developed. Filament features from the HEK metadata, such as length, chirality, and tilt are then combined with other physical features, such as the overlying decay index for two sets of filaments tracks - those that erupt and those that remain bound. Using statistical methods such as the Kolmogrov-Smirnov test and a Random Forest Classifier, we determine the effectiveness of the combined features in prediction. We conclude that there is significant overlap between the properties of filaments that erupt and those that do not, leading to predictions only ~5-10% above chance. However, the changes in features, such as a change in the filament's length over time, were determined to have the highest predictive power. We discuss the possible physical connections with the change in these features."This project has been supported by funding from the Division of Advanced Cyberinfrastructure within the Directorate for Computer and Information Science and Engineering, the Division of Astronomical Sciences within the Directorate for Mathematical and Physical Sciences, and the Division of Atmospheric and Geospace Sciences within the Directorate for Geosciences, under NSF award #1443061.”

  13. Solar Features - Prominences and Filaments - Filaments

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Filaments are formed in magnetic loops that hold relatively cool, dense gas suspended above the surface of the Sun (David Hathaway/NASA)

  14. COMPLEX FLARE DYNAMICS INITIATED BY A FILAMENT–FILAMENT INTERACTION

    Energy Technology Data Exchange (ETDEWEB)

    Zhu, Chunming; McAteer, R. T. James [Department of Astronomy, New Mexico State University, NM 88003 (United States); Liu, Rui [CAS Key Laboratory of Geospace Environment, Department of Geophysics and Planetary Sciences, University of Science and Technology of China, Hefei 230026 (China); Alexander, David [Department of Physics and Astronomy, Rice University, TX 77005 (United States); Sun, Xudong, E-mail: czhu@nmsu.edu [W. W. Hansen Experimental Physics Laboratory, Stanford University, Stanford, CA 94305 (United States)

    2015-11-01

    We report on an eruption involving a relatively rare filament–filament interaction on 2013 June 21, observed by SDO and STEREO-B. The two filaments were separated in height with a “double-decker” configuration. The eruption of the lower filament began simultaneously with a descent of the upper filament, resulting in a convergence and direct interaction of the two filaments. The interaction was accompanied by the heating of surrounding plasma and an apparent crossing of a loop-like structure through the upper filament. The subsequent coalescence of the filaments drove a bright front ahead of the erupting structures. The whole process was associated with a C3.0 flare followed immediately by an M2.9 flare. Shrinking loops and descending dark voids were observed during the M2.9 flare at different locations above a C-shaped flare arcade as part of the energy release, giving us unique insight into the flare dynamics.

  15. Large-Scale Patterns of Filament Channels and Filaments

    Science.gov (United States)

    Mackay, Duncan

    2016-07-01

    In this review the properties and large-scale patterns of filament channels and filaments will be considered. Initially, the global formation locations of filament channels and filaments are discussed, along with their hemispheric pattern. Next, observations of the formation of filament channels and filaments are described where two opposing views are considered. Finally, the wide range of models that have been constructed to consider the formation of filament channels and filaments over long time-scales are described, along with the origin of the hemispheric pattern of filaments.

  16. Remote Sub-Diffraction Imaging with Femtosecond Laser Filaments

    Science.gov (United States)

    2012-04-10

    from low-density plasma . Hence the size of the filaments is not limited by the aperture of an optical system [1] which would ordinarily determine the...The diameter of the filament is around 40 μm (estimated by knife -edge transmission measurements; not shown), which together with the scan step

  17. Nonlinear dynamics of the ion Weibel-filamentation instability: An analytical model for the evolution of the plasma and spectral properties

    Energy Technology Data Exchange (ETDEWEB)

    Ruyer, C., E-mail: charles.ruyer@polytechnique.edu; Gremillet, L., E-mail: laurent.gremillet@cea.fr; Debayle, A. [CEA, DAM, DIF, F-91297 Arpajon (France); Bonnaud, G. [CEA, Saclay, INSTN, F-91191 Gif-sur-Yvette (France)

    2015-03-15

    We present a predictive model of the nonlinear phase of the Weibel instability induced by two symmetric, counter-streaming ion beams in the non-relativistic regime. This self-consistent model combines the quasilinear kinetic theory of Davidson et al. [Phys. Fluids 15, 317 (1972)] with a simple description of current filament coalescence. It allows us to follow the evolution of the ion parameters up to a stage close to complete isotropization, and is thus of prime interest to understand the dynamics of collisionless shock formation. Its predictions are supported by 2-D and 3-D particle-in-cell simulations of the ion Weibel instability. The derived approximate analytical solutions reveal the various dependencies of the ion relaxation to isotropy. In particular, it is found that the influence of the electron screening can affect the results of simulations using an unphysical electron mass.

  18. Nonlinear dynamics of the ion Weibel-filamentation instability: an analytical model for the evolution of the plasma and spectral properties

    CERN Document Server

    Ruyer, C; Debayle, A; Bonnaud, G

    2015-01-01

    We present a predictive model of the nonlinear phase of the Weibel instability induced by two symmetric, counter-streaming ion beams in the non-relativistic regime. This self-consistent model combines the quasilinear kinetic theory of Davidson et al. [Phys. Fluids 15, 317 (1972)] with a simple description of current filament coalescence. It allows us to follow the evolution of the ion parameters up to a stage close to complete isotropization, and is thus of prime interest to understand the dynamics of collisionless shock formation. Its predictions are supported by 2-D and 3-D particle-in-cell simulations of the ion Weibel instability. The derived approximate analytical solutions reveal the various dependencies of the ion relaxation to isotropy. In particular, it is found that the influence of the electron screening can affect the results of simulations using an unphysical electron mass.

  19. Semiflexible filamentous composites

    NARCIS (Netherlands)

    Huisman, E.M.; Heussinger, C.; Storm, C.; Barkema, G.T.

    2010-01-01

    Inspired by the ubiquity of composite filamentous networks in nature, we investigate models of biopolymer networks that consist of interconnected floppy and stiff filaments. Numerical simulations carried out in three dimensions allow us to explore the microscopic partitioning of stresses and strains

  20. Proteomics of Filamentous Fungi

    NARCIS (Netherlands)

    Passel, van M.W.J.; Schaap, P.J.; Graaff, de L.H.

    2013-01-01

    Filamentous fungi, such as Aspergillus niger and Aspergillus oryzae traditionally have had an important role in providing enzymes and enzyme cocktails that are used in food industry. In recent years the genome sequences of many filamentous fungi have become available. This combined with

  1. Proteomics of Filamentous Fungi

    NARCIS (Netherlands)

    Passel, van M.W.J.; Schaap, P.J.; Graaff, de L.H.

    2013-01-01

    Filamentous fungi, such as Aspergillus niger and Aspergillus oryzae traditionally have had an important role in providing enzymes and enzyme cocktails that are used in food industry. In recent years the genome sequences of many filamentous fungi have become available. This combined with technologica

  2. Tungsten Filament Fire

    Science.gov (United States)

    Ruiz, Michael J.; Perkins, James

    2016-01-01

    We safely remove the outer glass bulb from an incandescent lamp and burn up the tungsten filament after the glass is removed. This demonstration dramatically illustrates the necessity of a vacuum or inert gas for the environment surrounding the tungsten filament inside the bulb. Our approach has added historical importance since the incandescent…

  3. Flux Cancellation Leading to CME Filament Eruptions

    Science.gov (United States)

    Popescu, Roxana M.; Panesar, Navdeep K.; Sterling, Alphonse C.; Moore, Ronald L.

    2016-01-01

    Solar filaments are strands of relatively cool, dense plasma magnetically suspended in the lower density hotter solar corona. They trace magnetic polarity inversion lines (PILs) in the photosphere below, and are supported against gravity at heights of up to approx.100 Mm above the chromosphere by the magnetic field in and around them. This field erupts when it is rendered unstable, often by magnetic flux cancellation or emergence at or near the PIL. We have studied the evolution of photospheric magnetic flux leading to ten observed filament eruptions. Specifically, we look for gradual magnetic changes in the neighborhood of the PIL prior to and during eruption. We use Extreme Ultraviolet (EUV) images from the Atmospheric Imaging Assembly (AIA), and magnetograms from the Helioseismic and Magnetic Imager (HMI), both on board the Solar Dynamics Observatory (SDO), to study filament eruptions and their photospheric magnetic fields. We examine whether flux cancellation or/and emergence leads to filament eruptions. We find that continuous flux cancellation was present at the PIL for many hours prior to each eruption. We present two CME-producing eruptions in detail and find the following: (a) the pre-eruption filament-holding core field is highly sheared and appears in the shape of a sigmoid above the PIL; (b) at the start of the eruption the opposite arms of the sigmoid reconnect in the middle above the site of (tether-cutting) flux cancellation at the PIL; (c) the filaments first show a slow-rise, followed by a fast-rise as they erupt. We conclude that these two filament eruptions result from flux cancellation in the middle of the sheared field, and thereafter evolve in agreement with the standard model for a CME/flare filament eruption from a closed bipolar magnetic field [flux cancellation (van Ballegooijen and Martens 1989 and Moore and Roumelrotis 1992) and runaway tether-cutting (Moore et. al 2001)].

  4. Spatio-temporal development of the filaments due to the thermal self-focusing instability near the critical surface in ionospheric plasmas

    Science.gov (United States)

    Gondarenko, N. A.; Guzdar, P. N.; Milikh, G. M.; Sharma, A. S.; Papadopoulos, K.; Ossakow, S. L.

    1999-07-01

    We study fully nonlinear spatio-temporal development of the thermal self-focusing instability of high-power radio waves near the critical surface of the ionosphere. These simulations improve on our earlier work by including an evolution equation for the density instead of using the assumption of constant pressure to determine the perturbed density connected with the known temperature perturbation. Using our two-dimensional nonlinear code we analyze the time scale and associated velocity for the development of the field-aligned irregularities as they spread from the critical surface both in the underdense as well as the overdense regions. The scaling of this velocity as a function of the radiated power of the heater electromagnetic wave (ERP) is determined. We also study the characteristic size of the self-focused filament as a function of ERP. Finally, the spectrum of the density and temperature fluctuations as well as modifications in the equilibrium values of these parameters for different values of ERP are presented.

  5. Femtosecond Laser Filamentation

    CERN Document Server

    Chin, See Leang

    2010-01-01

    Femtosecond Laser Filamentation gives a comprehensive review of the physics of propagation of intense femtosecond laser pulses in optical media (principally air) and the applications and challenges of this new technique. This book presents the modern understanding of the physics of femtosecond laser pulse propagation, including unusual new effects such as the self-transformation of the pulse into a white light laser pulse, intensity clamping, the physics of multiple filamentation and competition, and how filaments’ ability to melt glass leads to wave guide writing. The potential applications of laser filamentation in atmospheric sensing and the generation of other electromagnetic pulses from the UV to the radio frequency are treated, together with possible future challenges in the excitation of super-excited states of molecules. Exciting new phenomena such as filament induced ultrafast birefringence and the excitation of molecular rotational wave packets and their multiple revivals in air (gases) will also ...

  6. Bacterial intermediate filaments

    DEFF Research Database (Denmark)

    Charbon, Godefroid; Cabeen, M.; Jacobs-Wagner, C.

    2009-01-01

    Crescentin, which is the founding member of a rapidly growing family of bacterial cytoskeletal proteins, was previously proposed to resemble eukaryotic intermediate filament (IF) proteins based on structural prediction and in vitro polymerization properties. Here, we demonstrate that crescentin...

  7. Blistering of viscoelastic filaments

    CERN Document Server

    Sattler, R; Wagner, C

    2007-01-01

    When a dilute polymer solution experiences capillary thinning, it forms an almost uniformly cylindrical thread, which we study experimentally. In the last stages of thinning, when polymers have become fully stretched, the filament becomes prone to instabilities, of which we describe two: A novel "breathing" instability, originating from the edge of the filament, and a sinusoidal instability in the interior, which ultimately gives rise to a "blistering" pattern of beads on the filament. We describe the linear instability with a spatial resolution of 80 nm in the disturbance amplitude. For sufficiently high polymer concentrations, the filament eventually separates out into a "solid" phase of entangled polymers, connected by fluid beads. A solid polymer fiber of about 100 nanometer thickness remains, which is essentially permanent.

  8. Material Supply and Magnetic Configuration of an Active Region Filament

    Science.gov (United States)

    Zou, P.; Fang, C.; Chen, P. F.; Yang, K.; Hao, Q.; Cao, Wenda

    2016-11-01

    It is important to study the fine structures of solar filaments with high-resolution observations, since it can help us understand the magnetic and thermal structures of the filaments and their dynamics. In this paper, we study a newly formed filament located inside the active region NOAA 11762, which was observed by the 1.6 m New Solar Telescope at Big Bear Solar Observatory from 16:40:19 UT to 17:07:58 UT on 2013 June 5. As revealed by the Hα filtergrams, cool material is seen to be injected into the filament spine with a speed of 5-10 km s-1. At the source of the injection, brightenings are identified in the chromosphere, which are accompanied by magnetic cancellation in the photosphere, implying the importance of magnetic reconnection in replenishing the filament with plasmas from the lower atmosphere. Counter-streamings are detected near one endpoint of the filament, with the plane-of-the-sky speed being 7-9 km s-1 in the Hα red-wing filtergrams and 9-25 km s-1 in the blue-wing filtergrams. The observations are indicative that this active region filament is supported by a sheared arcade without magnetic dips, and the counter-streamings are due to unidirectional flows with alternative directions, rather than due to the longitudinal oscillations of filament threads as in many other filaments.

  9. Characterization of HI Filaments

    Science.gov (United States)

    Lubar, Emily; Verschuur, Gerrit L.

    2017-01-01

    We characterized the properties of dramatic interstellar HI filaments to learn more about the dynamics and structure of such features. Using Gauss fitting software, we searched the Effelsburg-Bonn HI Survey data for indications of a simple twisting (toroidal) motion across these filaments. Instead, we found that the structure was more complicated than expected. Apparent angular widths of several filaments were measured using the Galactic Arecibo L-band Feed Array HI (GALFA-HI), Bonn, and Leident/Argentine/Bonn (LAB) surveys. Based on filament widths and other parameters, we conclude that magnetism is the dominant force opposing internal motion and maintaining the structure of these filaments. The apparent width as a function of beam width closely follows a relationship reported in 1993 for HI features in general. They tend to subtend an angle two times the beam width, suggesting that the features remain unresolved.The Arecibo Observatory is operated by SRI International under a cooperative agreement with the National Science Foundation (AST-1100968), and in alliance with Ana G. Méndez-Universidad Metropolitana, and the Universities Space Research Association. The Arecibo Observatory REU is funded under grant AST-1559849 to Universidad Metropolitana.

  10. Filaments in Lupus I

    Science.gov (United States)

    Takahashi, Satoko; Rodon, J.; De Gregorio-Monsalvo, I.; Plunkett, A.

    2017-06-01

    The mechanisms behind the formation of sub-stellar mass sources are key to determine the populations at the low-mass end of the stellar distribution. Here, we present mapping observations toward the Lupus I cloud in C18O(2-1) and 13CO(2-1) obtained with APEX. We have identified a few velocity-coherent filaments. Each contains several substellar mass sources that are also identified in the 1.1mm continuum data (see also SOLA catalogue presentation). We will discuss the velocity structure, fragmentation properties of the identified filaments, and the nature of the detected sources.

  11. Aerogel-supported filament

    Science.gov (United States)

    Wuest, Craig R.; Tillotson, Thomas M.; Johnson, III, Coleman V.

    1995-01-01

    The present invention is a thin filament embedded in a low density aerogel for use in radiation detection instruments and incandescent lamps. The aerogel provides a supportive matrix that is thermally and electrically nonconductive, mechanically strong, highly porous, gas-permeable, and transparent to ionizing radiation over short distances. A low density, open-cell aerogel is cast around a fine filament or wire, which allows the wire to be positioned with little or no tension and keeps the wire in place in the event of breakage. The aerogel support reduces the stresses on the wire caused by vibrational, gravitational, electrical, and mechanical forces.

  12. The comparison study of diagnostics of light filaments in air

    Institute of Scientific and Technical Information of China (English)

    HAO; Zuoqiang; ZHANG; Jie; YU; Jin; ZHENG; Zhiyuan; YUAN; Xiaohui; ZHANG; Zhe; LI; Yutong; WANG; Zhaohua; LING; Weijun; WEI; Zhiyi

    2006-01-01

    Long plasma channels in air induced by femtosecond laser pulses are investigated using three different methods, including the cross-section imaging, resistivity measuring and acoustic diagnostics. These methods are based on different properties of the light filaments. A comparison of the three diagnostics shows that the imaging method is the most precise one in studying the filaments distribution and evolution, that the sonographic method is the most convenient approach to detecting long plasma channels by detecting the acoustic wave generation, and that the resistivity measurement can only be applied for giving a rough estimate. The diagnostics of filaments allow us to choose appropriate detecting methods and provide further insight into the dynamic evolution of the light filaments in air.

  13. Branching of keratin intermediate filaments.

    Science.gov (United States)

    Nafeey, Soufi; Martin, Ines; Felder, Tatiana; Walther, Paul; Felder, Edward

    2016-06-01

    Keratin intermediate filaments (IFs) are crucial to maintain mechanical stability in epithelial cells. Since little is known about the network architecture that provides this stiffness and especially about branching properties of filaments, we addressed this question with different electron microscopic (EM) methods. Using EM tomography of high pressure frozen keratinocytes, we investigated the course of several filaments in a branching of a filament bundle. Moreover we found several putative bifurcations in individual filaments. To verify our observation we also visualized the keratin network in detergent extracted keratinocytes with scanning EM. Here bifurcations of individual filaments could unambiguously be identified additionally to bundle branchings. Interestingly, identical filament bifurcations were also found in purified keratin 8/18 filaments expressed in Escherichia coli which were reassembled in vitro. This excludes that an accessory protein contributes to the branch formation. Measurements of the filament cross sectional areas showed various ratios between the three bifurcation arms. This demonstrates that intermediate filament furcation is very different from actin furcation where an entire new filament is attached to an existing filament. Instead, the architecture of intermediate filament bifurcations is less predetermined and hence consistent with the general concept of IF formation.

  14. Solar Features - Prominences and Filaments

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Prominences and filaments are two manifestations of the same phenomenon. Both prominences and filaments are features formed above the chromosphere by cool dense...

  15. Positrusion Filament Recycling System Project

    Data.gov (United States)

    National Aeronautics and Space Administration — TUI proposes a novel process to produce 3d printer feedstock filament out of scrap ABS on the ISS. Currently the plastic filament materials that most 3d printers use...

  16. Competition between multiphoton/tunnel ionization and filamentation induced by powerful femtosecond laser pulses in air

    Institute of Scientific and Technical Information of China (English)

    W. Liu; Q. Luo; S. L. Chin

    2003-01-01

    In this work we present experiments by focusing 42 femtosecond laser pulses in air using three different focal length lenses: f=100, 30 and 5 cm. For the longest focal length, only the filament, which is a weak plasma column, is observed. When the shorter focal length lens is used, a high density plasma is generated near the geometrical focus and coexists with a weak plasma channel of the filament. Under the tightest focusing condition, filamentation is prevented and only a strong plasma volume appears at the geometrical focus.

  17. Plasma Antenna

    OpenAIRE

    N M Vijay

    2014-01-01

    The fundamental base of plasma antenna is the use of an ionized medium as a conductor. The plasma antenna is a radiofrequency antenna formed by a plasma columns, Filaments or sheets, which are excited by a surface wave. The relevance of this device is how rapidly it can be turned on and off, only applying an electrical pulse. Besides its wide carrier frequency, the great directivity and controllable antenna shape. Otherwise a disadvantage is that it needs energy to be ionized....

  18. Properties of twisted ferromagnetic filaments

    Energy Technology Data Exchange (ETDEWEB)

    Belovs, Mihails; Cebers, Andrejs [University of Latvia, Zellu 8, LV-1002 (Latvia)], E-mail: aceb@tesla.sal.lv

    2009-02-01

    The full set of equations for twisted ferromagnetic filaments is derived. The linear stability analysis of twisted ferromagnetic filament is carried out. Two different types of the buckling instability are found - monotonous and oscillatory. The first in the limit of large twist leads to the shape of filament reminding pearls on the string, the second to spontaneous rotation of the filament, which may constitute the working of chiral microengine.

  19. Confined partial filament eruption and its reformation within a stable magnetic flux rope

    Energy Technology Data Exchange (ETDEWEB)

    Joshi, Navin Chandra; Kayshap, Pradeep; Uddin, Wahab [Aryabhatta Research Institute of Observational Sciences (ARIES), Manora Peak, Nainital 263 002, Uttarakhand (India); Srivastava, Abhishek K.; Dwivedi, B. N. [Department of Physics, Indian Institute of Technology (Banaras Hindu University), Varanasi 221005 (India); Filippov, Boris [Pushkov Institute of Terrestrial Magnetism, Ionosphere and Radio Wave Propagation, Russian Academy of Sciences, Troitsk, Moscow (Russian Federation); Chandra, Ramesh [Department of Physics, D.S.B. Campus, Kumaun University, Nainital 263 002, Uttarakhand (India); Choudhary, Debi Prasad, E-mail: navin@aries.res.in, E-mail: njoshi98@gmail.com [California State University Northridge, 18111 Nordhoff Street, Northridge, CA 91330 (United States)

    2014-05-20

    We present observations of a confined partial eruption of a filament on 2012 August 4, which restores its initial shape within ≈2 hr after eruption. From the Global Oscillation Network Group Hα observations, we find that the filament plasma turns into dynamic motion at around 11:20 UT from the middle part of the filament toward the northwest direction with an average speed of ≈105 km s{sup –1}. A little brightening underneath the filament possibly shows the signature of low-altitude reconnection below the filament eruptive part. In Solar Dynamics Observatory/Atmospheric Imaging Assembly 171 Å images, we observe an activation of right-handed helically twisted magnetic flux rope that contains the filament material and confines it during its dynamical motion. The motion of cool filament plasma stops after traveling a distance of ≈215 Mm toward the northwest from the point of eruption. The plasma moves partly toward the right foot point of the flux rope, while most of the plasma returns after 12:20 UT toward the left foot point with an average speed of ≈60 km s{sup –1} to reform the filament within the same stable magnetic structure. On the basis of the filament internal fine structure and its position relative to the photospheric magnetic fields, we find filament chirality to be sinistral, while the activated enveloping flux rope shows a clear right-handed twist. Thus, this dynamic event is an apparent example of one-to-one correspondence between the filament chirality (sinistral) and the enveloping flux rope helicity (positive). From the coronal magnetic field decay index, n, calculation near the flux rope axis, it is evident that the whole filament axis lies within the domain of stability (i.e., n < 1), which provides the filament stability despite strong disturbances at its eastern foot point.

  20. Effect of filament supports on emissive probe measurements

    Energy Technology Data Exchange (ETDEWEB)

    Wang, X.; Howes, C. T. [Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Colorado 80309 (United States); NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Horanyi, M. [Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Colorado 80309 (United States); NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Department of Physics, University of Colorado, Boulder, Colorado 80309 (United States); Robertson, S. [NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Department of Physics, University of Colorado, Boulder, Colorado 80309 (United States)

    2013-01-15

    We have constructed an emissive probe with a thin tungsten filament spot-welded across two nickel wires insulated with ceramic paint. We show that the ceramic supports covering the nickel wires have a large effect on the potential measurements in low-density plasmas. It is found that the potential measured by the emissive probe is more negative than the potential derived from a Langmuir probe current-voltage (I-V) characteristic curve when the plasma density is so low that the emitting filament remains immersed in the sheaths of the ceramic supports. The length of the filament L needs to be larger than about 2 Debye lengths (L > 2{lambda}{sub De}) in order to avoid the influence of the ceramic supports and to achieve reliable plasma potential measurements using emissive probes.

  1. Filamentous Fungi Fermentation

    DEFF Research Database (Denmark)

    Nørregaard, Anders; Stocks, Stuart; Woodley, John

    2014-01-01

    Filamentous fungi (including microorganisms such as Aspergillus niger and Rhizopus oryzae) represent an enormously important platform for industrial fermentation. Two particularly valuable features are the high yield coefficients and the ability to secrete products. However, the filamentous...... morphology, together with non-Newtonian rheological properties (shear thinning), result in poor oxygen transfer unless sufficient energy is provided to the fermentation. While genomic research may improve the organisms, there is no doubt that to enable further application in future it will be necessary...... to match such research with studies of oxygen transfer and energy supply to high viscosity fluids. Hence, the implementation of innovative solutions (some of which in principle are already possible) will be essential to ensure the further development of such fermentations....

  2. Solid friction between soft filaments

    CERN Document Server

    Ward, Andrew; Schwenger, Walter; Welch, David; Lau, A W C; Vitelli, Vincenzo; Mahadevan, L; Dogic, Zvonimir

    2015-01-01

    Any macroscopic deformation of a filamentous bundle is necessarily accompanied by local sliding and/or stretching of the constituent filaments. Yet the nature of the sliding friction between two aligned filaments interacting through multiple contacts remains largely unexplored. Here, by directly measuring the sliding forces between two bundled F-actin filaments, we show that these frictional forces are unexpectedly large, scale logarithmically with sliding velocity as in solid-like friction, and exhibit complex dependence on the filaments' overlap length. We also show that a reduction of the frictional force by orders of magnitude, associated with a transition from solid-like friction to Stokes' drag, can be induced by coating F-actin with polymeric brushes. Furthermore, we observe similar transitions in filamentous microtubules and bacterial flagella. Our findings demonstrate how altering a filament's elasticity, structure and interactions can be used to engineer interfilament friction and thus tune the prop...

  3. Fundamentals of Filament Interaction

    Science.gov (United States)

    2017-05-19

    provide a 1:1 image of the filament profile onto a CCD camera (The Imaging Source DMK72BUC02). Neutral density filters were used to prevent the...thermal velocity, until their momentum was arrested by collisions with neutral air molecules. This results in a short distance, transient current which...Martin Richardson, 3rd ELI-ALPS User Workshop, Szeged, Hungary November 2015 126 “Photonics and the Changing Energy Scene ”, Martin Richardson

  4. Filament Eruptions, Jets, and Space Weather

    Science.gov (United States)

    Moore, Ronald; Sterling, Alphonse; Robe, Nick; Falconer, David; Cirtain, Jonathan

    2013-01-01

    Previously, from chromospheric H alpha and coronal X-ray movies of the Sun's polar coronal holes, it was found that nearly all coronal jets (greater than 90%) are one or the other of two roughly equally common different kinds, different in how they erupt: standard jets and blowout jets (Yamauchi et al 2004, Apl, 605, 5ll: Moore et all 2010, Apj, 720, 757). Here, from inspection of SDO/AIA He II 304 A movies of 54 polar x-ray jets observed in Hinode/XRT movies, we report, as Moore et al (2010) anticipated, that (1) most standard x-ray jets (greater than 80%) show no ejected plasma that is cool enough (T is less than or approximately 10(exp 5K) to be seen in the He II 304 A movies; (2) nearly all blownout X-ray jets (greater than 90%) show obvious ejection of such cool plasma; (3) whereas when cool plasma is ejected in standard X-ray jets, it shows no lateral expansion, the cool plasma ejected in blowout X-ray jets shows strong lateral expansion; and (4) in many blowout X-ray jets, the cool plasma ejection displays the erupting-magnetic-rope form of clasic filament eruptions and is thereby seen to be a miniature filament eruption. The XRT movies also showed most blowout X-ray jets to be larger and brighter, and hence to apparently have more energy, than most standard X-ray jets. These observations (1) confirm the dichotomy of coronal jets, (2) agree with the Shibata model for standard jets, and (3) support the conclusion of Moore et al (2010) that in blowout jets the magnetic-arch base of the jet erupts in the manner of the much larger magnetic arcades in which the core field, the field rooted along the arcade's polarity inversion line, is sheared and twisted (sigmoid), often carries a cool-plasma filament, and erupts to blowout the arcade, producing a CME. From Hinode/SOT Ca II movies of the polar limb, Sterling et al (2010, ApJ, 714, L1) found that chromospheric Type-II spicules show a dichotomy of eruption dynamics similar to that found here for the cool-plasma

  5. Filament Identification through Mathematical Morphology

    CERN Document Server

    Koch, Eric W

    2015-01-01

    We present a new algorithm for detecting filamentary structure FilFinder. The algorithm uses the techniques of mathematical morphology for filament identification, presenting a complementary approach to current algorithms which use matched filtering or critical manifolds. Unlike other methods, FilFinder identifies filaments over a wide dynamic range in brightness. We apply the new algorithm to far infrared imaging data of dust emission released by the Herschel Gould Belt Survey team. Our preliminary analysis characterizes both filaments and fainter striations. We find a typical filament width of 0.09 pc across the sample, but the brightness varies from cloud to cloud. Several regions show a bimodal filament brightness distribution, with the bright mode (filaments) being an order of magnitude brighter than the faint mode (striations). Using the Rolling Hough Transform, we characterize the orientations of the striations in the data, finding preferred directions that agree with magnetic field direction where dat...

  6. Chaperonin filaments: The archael cytoskeleton

    Energy Technology Data Exchange (ETDEWEB)

    Trent, J.D.; Kagawa, H.K.; Yaoi, Takuro; Olle, E.; Zaluzec, N.J.

    1997-08-01

    Chaperonins are multi-subunit double-ring complexed composed of 60-kDa proteins that are believed to mediate protein folding in vivo. The chaperonins in the hyperthermophilic archaeon Sulfolobus shibatae are composed of the organism`s two most abundant proteins, which represent 4% of its total protein and have an intracellular concentration of {ge} 3.0 mg/ml. At concentrations of 1.0 mg/ml, purified chaperonin proteins aggregate to form ordered filaments. Filament formation, which requires Mg{sup ++} and nucleotide binding (not hydrolysis), occurs at physiological temperatures under conditions suggesting filaments may exist in vivo. If the estimated 4,600 chaperonins per cell, formed filaments in vivo, they could create a matrix of filaments that would span the diameter of an average S. shibatae cell 100 times. Direct observations of unfixed, minimally treated cells by intermediate voltage electron microscopy (300 kV) revealed an intracellular network of filaments that resembles chaperonin filaments produced in vitro. The hypothesis that the intracellular network contains chaperonins is supported by immunogold analyses. The authors propose that chaperonin activity may be regulated in vivo by filament formation and that chaperonin filaments may serve a cytoskeleton-like function in archaea and perhaps in other prokaryotes.

  7. Langmuir wave filamentation in the kinetic regime

    CERN Document Server

    Silantyev, Denis A; Rose, Harvey A

    2016-01-01

    Nonlinear Langmuir wave in the kinetic regime $k\\lambda_D\\gtrsim0.2$ has a transverse instability, where $k$ is the wavenumber and $\\lambda_D$ is the Debye length. The nonlinear stage of that instability development leads to the filamentation of Langmuir waves. Here we study the linear stage of transverse instability of both Bernstein-Greene-Kruskal (BGK) modes and dynamically prepared BGK-like initial conditions to find the same instability growth rate suggesting the universal mechanism for the kinetic saturation of stimulated Raman scatter in laser-plasma interaction experiments. Multidimensional Vlasov simulations results are compared to the theoretical predictions.

  8. Magnetized Weibel filaments as a source of circularly polarized light

    Science.gov (United States)

    Sinha, Ujjwal; Martins, Joana; Vieira, Jorge; Fonseca, Ricardo; Silva, Luis

    2015-11-01

    We investigate radiation spectra of plasma particles trapped in Weibel filaments generated from multidimensional particle in cell simulations with OSIRIS in magnetized and unmagnetized plasmas. We show that an important parameter determining polarization of emitted radiation is the magnetization of ambient media. Polarization of radiation emitted during counter-propagating plasma flows with different magnetizations is explored by extracting trajectories of particles sampled from PIC simulations and computing their radiation spectrum. Particle trajectories in magnetized plasmas undergo EXB drift at Weibel boundaries leading to a preferential drift direction, whereas, in unmagnetized case the particles have no net drift. As a result, significant fraction of radiated energy from magnetized filament is circularly polarized (CP). Energy attributed to different polarizations is calculated by measuring degree of polarizations. With increasing magnetization, the fraction of radiated energy attributed to CP increases. The direction of circular polarization also changes with direction of applied magnetic field. The study is of significance for understanding radiation from Gamma Ray Bursts.

  9. Metabolomics protocols for filamentous fungi.

    Science.gov (United States)

    Gummer, Joel P A; Krill, Christian; Du Fall, Lauren; Waters, Ormonde D C; Trengove, Robert D; Oliver, Richard P; Solomon, Peter S

    2012-01-01

    Proteomics and transcriptomics are established functional genomics tools commonly used to study filamentous fungi. Metabolomics has recently emerged as another option to complement existing techniques and provide detailed information on metabolic regulation and secondary metabolism. Here, we describe broad generic protocols that can be used to undertake metabolomics studies in filamentous fungi.

  10. The interaction of a magnetohydrodynamical shock with a filament

    CERN Document Server

    Goldsmith, K J A

    2016-01-01

    We present 3D magnetohydrodynamic numerical simulations of the adiabatic interaction of a shock with a dense, filamentary cloud. We investigate the effects of various filament lengths and orientations on the interaction using different orientations of the magnetic field, and vary the Mach number of the shock, the density contrast of the filament, and the plasma beta, in order to determine their effect on the evolution and lifetime of the filament. We find that in a parallel magnetic field filaments have longer lifetimes if they are orientated more 'broadside' to the shock front, and that an increase in the density contrast hastens the destruction of the cloud, in terms of the modified cloud-crushing time-scale, tcs. The combination of a mild shock and a perpendicular or oblique field provides the best condition for extending the life of the filament, with some filaments able to survive almost indefinitely since they are cocooned by the magnetic field. A high value for the density contrast does not initiate la...

  11. Perturbation growth in accreting filaments

    CERN Document Server

    Clarke, Seamus D; Hubber, David A

    2016-01-01

    We use smoothed particle hydrodynamic simulations to investigate the growth of perturbations in infinitely long, initially sub-critical but accreting filaments. The growth of these perturbations leads to filament fragmentation and the formation of cores. Most previous work on this subject has been confined to the growth and fragmentation of equilibrium filaments and has found that there exists a preferential fragmentation length scale which is roughly 4 times the filament's diameter. Our results show a more complicated dispersion relation with a series of peaks linking perturbation wavelength and growth rate. These are due to gravo-acoustic oscillations along the longitudinal axis during the sub-critical phase of growth. The positions of the peaks in growth rate have a strong dependence on both the mass accretion rate onto the filament and the temperature of the gas. When seeded with a multi-wavelength density power spectrum there exists a clear preferred core separation equal to the largest peak in the dispe...

  12. Resonantly enhanced filamentation in gases

    CERN Document Server

    Doussot, J; Billard, F; Béjot, P; Faucher, O

    2016-01-01

    In this Letter, a low-loss Kerr-driven optical filament in Krypton gas is experimentally reported in the ultraviolet. The experimental findings are supported by ab initio quantum calculations describing the atomic optical response. Higher-order Kerr effect induced by three-photon resonant transitions is identified as the underlying physical mechanism responsible for the intensity stabilization during the filamentation process, while ionization plays only a minor role. This result goes beyond the commonly-admitted paradigm of filamentation, in which ionization is a necessary condition of the filament intensity clamping. At resonance, it is also experimentally demonstrated that the filament length is greatly extended because of a strong decrease of the optical losses.

  13. Chloroplast actin filaments organize meshwork on the photorelocated chloroplasts in the moss Physcomitrella patens.

    Science.gov (United States)

    Yamashita, Hiroko; Sato, Yoshikatsu; Kanegae, Takeshi; Kagawa, Takatoshi; Wada, Masamitsu; Kadota, Akeo

    2011-02-01

    Cytoskeleton dynamics during phototropin-dependent chloroplast photorelocation movement was analyzed in protonemal cells of actin- and microtubule-visualized lines of Physcomitrella patens expressing GFP- or tdTomato-talin and GFP-tubulin. Using newly developed epi- and trans-microbeam irradiation systems that permit fluorescence observation of the cell under blue microbeam irradiation inducing chloroplast relocation, it was revealed that meshwork of actin filaments formed at the chloroplast-accumulating area both in the avoidance and accumulation movements. The structure disappeared soon when blue microbeam was turned off, and it was not induced under red microbeam irradiation that did not evoke chloroplast relocation movement. In contrast, no apparent change in microtubule organization was detected during the movements. The actin meshwork was composed of short actin filaments distinct from the cytoplasmic long actin cables and was present between the chloroplasts and plasma membrane. The short actin filaments emerged from around the chloroplast periphery towards the center of chloroplast. Showing highly dynamic behavior, the chloroplast actin filaments (cp-actin filaments) were rapidly organized into meshwork on the chloroplast surface facing plasma membrane. The actin filament configuration on a chloroplast led to the formation of actin meshwork area in the cell as the chloroplasts arrived at and occupied the area. After establishment of the meshwork, cp-actin filaments were still highly dynamic, showing appearance, disappearance, severing and bundling of filaments. These results indicate that the cp-actin filaments have significant roles in the chloroplast movement and positioning in the cell.

  14. Investigation of the Effect of Resistivity on Scrape Off Layer Filaments using Three Dimensional Simulations

    CERN Document Server

    Easy, Luke; Omotani, John; Walkden, Nick; Dudson, Benjamin

    2015-01-01

    The propagation of filaments in the Scrape Off Layer (SOL) of tokamaks largely determine the plasma profiles in the region. In a conduction limited SOL, parallel temperature gradients are expected, such that the resistance to parallel currents is greater at the target than further upstream. Since the perpendicular motion of an isolated filament is largely determined by balance of currents that flow through it, this may be expected to affect filament transport. 3D simulations have thus been used to study the influence of enhanced parallel resistivity on the dynamics of filaments. Filaments with the smallest perpendicular length scales, which were inertially limited at low resistivity (meaning that polarization rather than parallel currents determine their radial velocities), were unaffected by resistivity. For larger filaments, faster velocities were produced at higher resistivities, due to two mechanisms. Firstly parallel currents were reduced and polarization currents were enhanced, meaning that the inertial...

  15. Powering of cool filaments in cluster cores by buoyant bubbles. I. Qualitative model

    CERN Document Server

    Churazov, E; Schekochihin, A

    2013-01-01

    Cool-core clusters (e.g., Perseus or M87) often possess a network of bright gaseous filaments, observed in radio, IR, optical and X-ray bands. We propose that these filaments are powered by the reconnection of the magnetic field in the wakes of buoyant bubbles. AGN-inflated bubbles of relativistic plasma rise buoyantly in the cluster atmosphere, stretching and amplifying the field in the wake to values of $\\beta =8\\pi P_{gas}/B^2\\sim 1$. The field lines in the wake have opposite directions and are forced together as the bubble motion stretches the filament. This setup bears strong similarity to the coronal loops on the Sun or the Earth magneto-tail. The reconnection process naturally explains both the required level of local dissipation rate in filaments and the overall luminosity of filaments. The original source of power for the filaments is the potential energy of buoyant bubbles, inflated by the central AGN.

  16. Dramatic enhancement of supercontinuum generation in elliptically-polarized laser filaments

    CERN Document Server

    Rostami, Shermineh; Lim, Khan; Palastro, John P; Durand, Magali; Diels, Jean-Claude; Arissian, Ladan; Baudelet, Matthieu; Richardson, Martin

    2015-01-01

    Broadband laser sources based on supercontinuum generation by femtosecond laser filamentation have enabled applications from stand-off sensing and spectroscopy to the generation and self-compression of high-energy few-cycle pulses. Filamentation relies on the dynamic balance between self-focusing and plasma defocusing, mediated by the Kerr nonlinearity and multiphoton ionization respectively. The filament properties, including the supercontinuum generation, are therefore highly sensitive to the properties of both the laser source and the propagation medium. Here, we report the anomalous spectral broadening of the supercontinuum for filamentation in molecular gases, which is observed for specific elliptical polarization states of the input laser pulse. The resulting spectrum is accompanied by a modification of the supercontinuum polarization state and a lengthening of the filament plasma column. Numerical simulations confirm that the anomalous behavior originates from the delayed rotational response of the med...

  17. Laser filament-induced aerosol formation

    Directory of Open Access Journals (Sweden)

    H. Saathoff

    2013-05-01

    Full Text Available Using the aerosol and cloud simulation chamber AIDA, we investigated the laser filament induced particle formation in ambient air, humid synthetic air, humid nitrogen, argon–oxygen mixture, and pure argon in order to simulate the particle formation under realistic atmospheric conditions as well as to investigate the influence of typical gas-phase atmospheric constituents on the particle formation. Terawatt laser plasma filaments generated new particles in the size range 3 to 130 nm with particle production rates ranging from 1 × 107 to 5 × 109 cm−3 plasma s−1 for the given experimental conditions. In all cases the particle formation rates increased exponentially with the water content of the gas mixture. Furthermore, the presence of a few ppb of trace gases like SO2 and α-pinene clearly enhanced the particle yield by number, the latter also by mass. Our findings suggest that new particle formation is efficiently supported by oxidized species like acids generated by the photoionization of both major and minor components of the air, including N2, NH3, SO2 and organics.

  18. Laser filament-induced aerosol formation

    Directory of Open Access Journals (Sweden)

    H. Saathoff

    2012-11-01

    Full Text Available Using the aerosol and cloud simulation chamber AIDA we investigated the laser filament induced particle formation in ambient air, humid synthetic air, humid nitrogen, argon-oxygen mixture, and pure argon in order to simulate the particle formation under realistic atmospheric conditions as well as to investigate the influence of typical gas-phase atmospheric constituents on the particle formation. Terawatt laser plasma filaments generated new particles in the size range 3 to 130 nm with particle production rates ranging from 1 × 107 to 5 × 109 cm−3 plasma s−1. In all cases the particle formation rates increased exponentially with the water content of the gas mixture. Furthermore, the presence of a few ppb of trace gases like SO2 and α-pinene clearly enhanced the particle yield by number, the latter also by mass. Our findings suggest that new particle formation is efficiently supported by acids generated by the photo-ionization of both major and minor components of the air, including N2, NH3, SO2 and organics.

  19. Perturbation growth in accreting filaments

    Science.gov (United States)

    Clarke, S. D.; Whitworth, A. P.; Hubber, D. A.

    2016-05-01

    We use smoothed particle hydrodynamic simulations to investigate the growth of perturbations in infinitely long filaments as they form and grow by accretion. The growth of these perturbations leads to filament fragmentation and the formation of cores. Most previous work on this subject has been confined to the growth and fragmentation of equilibrium filaments and has found that there exists a preferential fragmentation length-scale which is roughly four times the filament's diameter. Our results show a more complicated dispersion relation with a series of peaks linking perturbation wavelength and growth rate. These are due to gravo-acoustic oscillations along the longitudinal axis during the sub-critical phase of growth. The positions of the peaks in growth rate have a strong dependence on both the mass accretion rate onto the filament and the temperature of the gas. When seeded with a multiwavelength density power spectrum, there exists a clear preferred core separation equal to the largest peak in the dispersion relation. Our results allow one to estimate a minimum age for a filament which is breaking up into regularly spaced fragments, as well as an average accretion rate. We apply the model to observations of filaments in Taurus by Tafalla & Hacar and find accretion rates consistent with those estimated by Palmeirim et al.

  20. Activity Cycle of Solar Filaments

    Indian Academy of Sciences (India)

    K. J. Li; Q. X. Li; P. X. Gao; J. Mu; H. D. Chen; T. W. Su

    2007-06-01

    Long-term variation in the distribution of the solar filaments observed at the Observatorie de Paris, Section de Meudon from March 1919 to December 1989 is presented to compare with sunspot cycle and to study the periodicity in the filament activity, namely the periods of the coronal activity with the Morlet wavelet used. It is inferred that the activity cycle of solar filaments should have the same cycle length as sunspot cycle, but the cycle behavior of solar filaments is globally similar in profile with, but different in detail from, that of sunspot cycles. The amplitude of solar magnetic activity should not keep in phase with the complexity of solar magnetic activity. The possible periods in the filament activity are about 10.44 and 19.20 years. The wavelet local power spectrum of the period 10.44 years is statistically significant during the whole consideration time. The wavelet local power spectrum of the period 19.20 years is under the 95% confidence spectrum during the whole consideration time, but over the mean red-noise spectrum of = 0.72 before approximate Carrington rotation number 1500, and after that the filament activity does not statistically show the period. Wavelet reconstruction indicates that the early data of the filament archive (in and before cycle 16) are more noiseful than the later (in and after cycle 17).

  1. Comparative Biomechanics of Thick Filaments and Thin Filaments with Functional Consequences for Muscle Contraction

    Directory of Open Access Journals (Sweden)

    Mark S. Miller

    2010-01-01

    Full Text Available The scaffold of striated muscle is predominantly comprised of myosin and actin polymers known as thick filaments and thin filaments, respectively. The roles these filaments play in muscle contraction are well known, but the extent to which variations in filament mechanical properties influence muscle function is not fully understood. Here we review information on the material properties of thick filaments, thin filaments, and their primary constituents; we also discuss ways in which mechanical properties of filaments impact muscle performance.

  2. Centromeres of filamentous fungi

    Science.gov (United States)

    Smith, Kristina M.; Galazka, Jonathan M.; Phatale, Pallavi A.; Connolly, Lanelle R.; Freitag, Michael

    2012-01-01

    How centromeres are assembled and maintained remains one of the fundamental questions in cell biology. Over the past 20 years the idea of centromeres as precise genetic loci has been replaced by the realization that it is predominantly the protein complement that defines centromere localization and function. Thus, placement and maintenance of centromeres are excellent examples of epigenetic phenomena in the strict sense. In contrast, the highly derived “point centromeres” of the budding yeast Saccharomyces cerevisiae and its close relatives are counterexamples for this general principle of centromere maintenance. While we have learned much in the past decade, it remains unclear if mechanisms for epigenetic centromere placement and maintenance are shared amongst various groups of organisms. For that reason it seems prudent to examine species from many different phylogenetic groups with the aim to extract comparative information that will yield a more complete picture of cell division in all eukaryotes. This review addresses what has been learned by studying the centromeres of filamentous fungi, a large, heterogeneous group of organisms that includes important plant, animal and human pathogens, saprobes and symbionts that fulfill essential roles in the biosphere, as well as a growing number of taxa that have become indispensable for industrial use. PMID:22752455

  3. Collisions of Vortex Filament Pairs

    Science.gov (United States)

    Banica, Valeria; Faou, Erwan; Miot, Evelyne

    2014-12-01

    We consider the problem of collisions of vortex filaments for a model introduced by Klein et al. (J Fluid Mech 288:201-248, 1995) and Zakharov (Sov Phys Usp 31(7):672-674, 1988, Lect. Notes Phys 536:369-385, 1999) to describe the interaction of almost parallel vortex filaments in three-dimensional fluids. Since the results of Crow (AIAA J 8:2172-2179, 1970) examples of collisions are searched as perturbations of antiparallel translating pairs of filaments, with initial perturbations related to the unstable mode of the linearized problem; most results are numerical calculations. In this article, we first consider a related model for the evolution of pairs of filaments, and we display another type of initial perturbation leading to collision in finite time. Moreover, we give numerical evidence that it also leads to collision through the initial model. We finally study the self-similar solutions of the model.

  4. Edge localized mode rotation and the nonlinear dynamics of filaments

    Energy Technology Data Exchange (ETDEWEB)

    Morales, J. A.; Bécoulet, M.; Garbet, X.; Dif-Pradalier, G.; Huijsmans, G. T. A.; Fil, A.; Nardon, E.; Passeron, C.; Latu, G. [CEA, IRFM, 13108 St. Paul-Lez-Durance (France); Orain, F.; Hoelzl, M. [Max Planck Institute for Plasma Physics, Boltzmannstr. 2, 85748 Garching (Germany); Pamela, S. [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Cahyna, P. [Institute of Plasma Physics ASCR, Za Slovankou 1782/3, 182 00 Prague 8 (Czech Republic)

    2016-04-15

    Edge Localized Modes (ELMs) rotating precursors were reported few milliseconds before an ELM crash in several tokamak experiments. Also, the reversal of the filaments rotation at the ELM crash is commonly observed. In this article, we present a mathematical model that reproduces the rotation of the ELM precursors as well as the reversal of the filaments rotation at the ELM crash. Linear ballooning theory is used to establish a formula estimating the rotation velocity of ELM precursors. The linear study together with nonlinear magnetohydrodynamic simulations give an explanation to the rotations observed experimentally. Unstable ballooning modes, localized at the pedestal, grow and rotate in the electron diamagnetic direction in the laboratory reference frame. Approaching the ELM crash, this rotation decreases corresponding to the moment when the magnetic reconnection occurs. During the highly nonlinear ELM crash, the ELM filaments are cut from the main plasma due to the strong sheared mean flow that is nonlinearly generated via the Maxwell stress tensor.

  5. Edge localized mode rotation and the nonlinear dynamics of filaments

    Science.gov (United States)

    Morales, J. A.; Bécoulet, M.; Garbet, X.; Orain, F.; Dif-Pradalier, G.; Hoelzl, M.; Pamela, S.; Huijsmans, G. T. A.; Cahyna, P.; Fil, A.; Nardon, E.; Passeron, C.; Latu, G.

    2016-04-01

    Edge Localized Modes (ELMs) rotating precursors were reported few milliseconds before an ELM crash in several tokamak experiments. Also, the reversal of the filaments rotation at the ELM crash is commonly observed. In this article, we present a mathematical model that reproduces the rotation of the ELM precursors as well as the reversal of the filaments rotation at the ELM crash. Linear ballooning theory is used to establish a formula estimating the rotation velocity of ELM precursors. The linear study together with nonlinear magnetohydrodynamic simulations give an explanation to the rotations observed experimentally. Unstable ballooning modes, localized at the pedestal, grow and rotate in the electron diamagnetic direction in the laboratory reference frame. Approaching the ELM crash, this rotation decreases corresponding to the moment when the magnetic reconnection occurs. During the highly nonlinear ELM crash, the ELM filaments are cut from the main plasma due to the strong sheared mean flow that is nonlinearly generated via the Maxwell stress tensor.

  6. Filament Identification through Mathematical Morphology

    OpenAIRE

    Koch, Eric W.; Rosolowsky, Erik W.

    2015-01-01

    We present a new algorithm for detecting filamentary structure FilFinder. The algorithm uses the techniques of mathematical morphology for filament identification, presenting a complementary approach to current algorithms which use matched filtering or critical manifolds. Unlike other methods, FilFinder identifies filaments over a wide dynamic range in brightness. We apply the new algorithm to far infrared imaging data of dust emission released by the Herschel Gould Belt Survey team. Our prel...

  7. Stability of Rotating Self-Gravitating Filaments:Stability of Rotating Self-Gravitating Filaments: Effects of Magnetic Field

    CERN Document Server

    Sadhukhan, Shubhadeep; Chakraborty, Sagar

    2016-01-01

    We have performed systemmatic local linear stability analysis on a radially stratified infinite self-gravitating cylinder of rotating plasma under the influence of magnetic field. In order to render the system analytically tractable, we have focussed solely on the axisymmetric modes of perturbations. Using cylindrical coordinate system, we have derived the critical linear mass density of a non-rotating filament required for gravitational collapse to ensue in the presence of azimuthal magnetic field. Moreover, for such filaments threaded by axial magnetic field, we show that the growth rates of the modes having non-zero radial wavenumber are reduced more strongly by the magnetic field than that of the modes having zero radial wavenumber. More importantly, our study contributes to the understanding of the stability property of rotating astrophysical filaments that are more often than not influenced by magnetic fields. In addition to complementing many relevant numerical studies reported the literature, our resu...

  8. Giant quiescent solar filament observed with high-resolution spectroscopy

    Science.gov (United States)

    Kuckein, C.; Verma, M.; Denker, C.

    2016-05-01

    Aims: An extremely large filament was studied in various layers of the solar atmosphere. The inferred physical parameters and the morphological aspects are compared with smaller quiescent filaments. Methods: A giant quiet-Sun filament was observed with the high-resolution Echelle spectrograph at the Vacuum Tower Telescope at Observatorio del Teide, Tenerife, Spain, on 2011 November 15. A mosaic of spectra (ten maps of 100″ × 182″) was recorded simultaneously in the chromospheric absorption lines Hα and Na i D2. Physical parameters of the filament plasma were derived using cloud model (CM) inversions and line core fits. The spectra were complemented with full-disk filtergrams (He i λ10830 Å, Hα, and Ca ii K) of the Chromospheric Telescope (ChroTel) and full-disk magnetograms of the Helioseismic and Magnetic Imager (HMI). Results: The filament had extremely large linear dimensions (~817 arcsec), which corresponds to about 658 Mm along a great circle on the solar surface. A total amount of 175119 Hα contrast profiles were inverted using the CM approach. The inferred mean line-of-sight (LOS) velocity, Doppler width, and source function were similar to previous works of smaller quiescent filaments. However, the derived optical thickness was higher. LOS velocity trends inferred from the Hα line core fits were in accord but weaker than those obtained with CM inversions. Signatures of counter-streaming flows were detected in the filament. The largest brightening conglomerates in the line core of Na i D2 coincided well with small-scale magnetic fields as seen by HMI. Mixed magnetic polarities were detected close to the ends of barbs. The computation of photospheric horizontal flows based on HMI magnetograms revealed flow kernels with a size of 5-8 Mm and velocities of 0.30-0.45 km s-1 at the ends of the filament. Conclusions: The physical properties of extremely large filaments are similar to their smaller counterparts, except for the optical thickness, which in

  9. A filament of dark matter between two clusters of galaxies.

    Science.gov (United States)

    Dietrich, Jörg P; Werner, Norbert; Clowe, Douglas; Finoguenov, Alexis; Kitching, Tom; Miller, Lance; Simionescu, Aurora

    2012-07-12

    It is a firm prediction of the concordance cold-dark-matter cosmological model that galaxy clusters occur at the intersection of large-scale structure filaments. The thread-like structure of this 'cosmic web' has been traced by galaxy redshift surveys for decades. More recently, the warm–hot intergalactic medium (a sparse plasma with temperatures of 10(5) kelvin to 10(7) kelvin) residing in low-redshift filaments has been observed in emission and absorption. However, a reliable direct detection of the underlying dark-matter skeleton, which should contain more than half of all matter, has remained elusive, because earlier candidates for such detections were either falsified or suffered from low signal-to-noise ratios and unphysical misalignments of dark and luminous matter. Here we report the detection of a dark-matter filament connecting the two main components of the Abell 222/223 supercluster system from its weak gravitational lensing signal, both in a non-parametric mass reconstruction and in parametric model fits. This filament is coincident with an overdensity of galaxies and diffuse, soft-X-ray emission, and contributes a mass comparable to that of an additional galaxy cluster to the total mass of the supercluster. By combining this result with X-ray observations, we can place an upper limit of 0.09 on the hot gas fraction (the mass of X-ray-emitting gas divided by the total mass) in the filament.

  10. Boolean gates on actin filaments

    Science.gov (United States)

    Siccardi, Stefano; Tuszynski, Jack A.; Adamatzky, Andrew

    2016-01-01

    Actin is a globular protein which forms long polar filaments in the eukaryotic cytoskeleton. Actin networks play a key role in cell mechanics and cell motility. They have also been implicated in information transmission and processing, memory and learning in neuronal cells. The actin filaments have been shown to support propagation of voltage pulses. Here we apply a coupled nonlinear transmission line model of actin filaments to study interactions between voltage pulses. To represent digital information we assign a logical TRUTH value to the presence of a voltage pulse in a given location of the actin filament, and FALSE to the pulse's absence, so that information flows along the filament with pulse transmission. When two pulses, representing Boolean values of input variables, interact, then they can facilitate or inhibit further propagation of each other. We explore this phenomenon to construct Boolean logical gates and a one-bit half-adder with interacting voltage pulses. We discuss implications of these findings on cellular process and technological applications.

  11. Galaxy pairs align with galactic filaments

    CERN Document Server

    Tempel, Elmo

    2015-01-01

    Context. Gravitational collapse theory and numerical simulations suggest that the velocity field within large-scale galaxy filaments is dominated by motions along the filaments. Aims. Our aim is to check whether observational data reveal any preferred orientation of galaxy pairs with respect to the underlying filaments as a result of the expectedly anisotropic velocity field. Methods. We use galaxy pairs and galaxy filaments identified from the Sloan Digital Sky Survey data. For filament extraction, we use the Bisous model that is based the marked point process technique. During the filament detection, we use the centre point of each pair instead of the positions of galaxies to avoid a built-in influence of pair orientation on the filament construction. For pairs lying within filaments (3012 cases), we calculate the angle between the line connecting galaxies of each pair and their host filament. To avoid redshift-space distortions, the angle is measured in the plain of the sky. Results. The alignment analysis...

  12. Spectroscopic analysis of high electric field enhanced ionization in laser filaments in air for corona guiding

    Institute of Scientific and Technical Information of China (English)

    Yingxia Wei; Yaoxiang Liu; Tie-Jun Wang; Na Chen; Jingjing Ju; Yonghong Liu; Haiyi Sun; Cheng Wang; Jiansheng Liu; Haihe Lu; See Leang Chin; Ruxin Li

    2016-01-01

    We report on a systematic experimental study on the fluorescence spectra produced from a femtosecond laser filament in air under a high electric field. The electric field alone was strong enough to create corona discharge(CD). Fluorescence spectra from neutral and ionic air molecules were measured and compared with pure high-voltage CD and pure laser filamentation(FIL). Among them, high electric field assisted laser FIL produced nitrogen fluorescence more efficiently than either pure CD or pure FIL processes. The nonlinear enhancement of fluorescence from the interaction of the laser filament and corona discharging electric field resulted in a more efficient ionization along the laser filament zone, which was confirmed by the spectroscopic measurement of both ionization-induced fluorescence and plasma-scattered 800 nm laser pulses. This is believed to be the key precursor process for filament-guided discharge.

  13. Dynamics of large femtosecond filament arrays: possibilities, limitations, and trade-offs

    CERN Document Server

    Walasik, Wiktor

    2015-01-01

    Stable propagation of large, multifilament arrays over long distances in air paves new ways for microwave-radiation manipulation. Although, the dynamics of a single or a few filaments was discussed in some of the previous studies, we show that the stability of large plasma filament arrays is significantly more complicated and is constrained by several trade-offs. Here, we analyze the stability properties of rectangular arrays as a function of four parameters: relative phase of the generating beams, number of filaments, separation between them, and initial power. We find that arrays with alternating phase of filaments are more stable than similar arrays with all beams in phase. Additionally, we show that increasing the size of an array increases its stability, and that a proper choice of the beam separation and the initial power has to be made in order to obtain a dense and regular array of filaments.

  14. Characteristics of filamentation in ZK7 glass by negatively chirped femtosecond laser pulses

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The filamentation characteristics of femtosecond laser pulses in ZK7 glass are in- vestigated experimentally as a function of initial negative chirps. It is found that the filament threshold power grows rapidly and the filament length extends over a long distance with increasing initial temporal chirps. The measurement of supercon- tinuum reveals that the plasma generation process within filamentation becomes weaker as the initial negative chirp increases, leading to a self-guiding long light channel dominated by Kerr nonlinearity. The interference of transverse rings in multifilamentation of the chirped laser pulses is observed as well. Analyses and discussions give an interpretation of this chirp-induced ionization-free filamenta- tion. These results indicate that initial chirps will play a crucial role in the filament formation of ultrashort laser pulses in transparent media.

  15. Introduction to vortex filaments in equilibrium

    CERN Document Server

    Andersen, Timothy D

    2014-01-01

    This book presents fundamental concepts and seminal results to the study of vortex filaments in equilibrium. It also presents new discoveries in quasi-2D vortex structures with applications to geophysical fluid dynamics and magnetohydrodynamics in plasmas.  It fills a gap in the vortex statistics literature by simplifying the mathematical introduction to this complex topic, covering numerical methods, and exploring a wide range of applications with numerous examples. The authors have produced an introduction that is clear and easy to read, leading the reader step-by-step into this topical area. Alongside the theoretical concepts and mathematical formulations, interesting applications are discussed. This combination makes the text useful for students and researchers in mathematics and physics.

  16. Temperature Controlled Filamentation in Argon Gas

    Institute of Scientific and Technical Information of China (English)

    CAO Shi-Ying; KONG Wei-Peng; SONG Zhen-Ming; QIN Yu; LI Ru-Xin; WANG Qing-Yue; ZHANG Zhi-Gang

    2008-01-01

    Temperature controlled filamentation is experimentally demonstrated in a temperature gradient gas-filled tube.The proper position of the tube is heated by a furnace and two ends of the tube are cooled by air. The experimental results show that multiple filaments are shrunken into a single fila.ment or no filament only by increasing the temperature at the beginning of the filament. This technique offers another degree of freedom of controlling the filamentation and opens a new way for intense monocycle pulse generation through gradient temperature in a noble gas.

  17. Intermediate Filaments in Caenorhabditis elegans.

    Science.gov (United States)

    Zuela, Noam; Gruenbaum, Yosef

    2016-01-01

    More than 70 different genes in humans and 12 different genes in Caenorhabditis elegans encode the superfamily of intermediate filament (IF) proteins. In C. elegans, similar to humans, these proteins are expressed in a cell- and tissue-specific manner, can assemble into heteropolymers and into 5-10nm wide filaments that account for the principal structural elements at the nuclear periphery, nucleoplasm, and cytoplasm. At least 5 of the 11 cytoplasmic IFs, as well as the nuclear IF, lamin, are essential. In this chapter, we will include a short review of our current knowledge of both cytoplasmic and nuclear IFs in C. elegans and will describe techniques used for their analyses.

  18. Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry

    Science.gov (United States)

    Hartig, Kyle C.; Ghebregziabher, Isaac; Jovanovic, Igor

    2017-03-01

    The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is impor-tant for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament-uranium interaction points. The resulting uranium oxide emis-sion exhibits a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. The results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity.

  19. Standoff Detection of Uranium and its Isotopes by Femtosecond Filament Laser Ablation Molecular Isotopic Spectrometry.

    Science.gov (United States)

    Hartig, Kyle C; Ghebregziabher, Isaac; Jovanovic, Igor

    2017-03-08

    The ability to perform not only elementally but also isotopically sensitive detection and analysis at standoff distances is impor-tant for remote sensing applications in diverse ares, such as nuclear nonproliferation, environmental monitoring, geophysics, and planetary science. We demonstrate isotopically sensitive real-time standoff detection of uranium by the use of femtosecond filament-induced laser ablation molecular isotopic spectrometry. A uranium oxide molecular emission isotope shift of 0.05 ± 0.007 nm is reported at 593.6 nm. We implement both spectroscopic and acoustic diagnostics to characterize the properties of uranium plasma generated at different filament-uranium interaction points. The resulting uranium oxide emis-sion exhibits a nearly constant signal-to-background ratio over the length of the filament, unlike the uranium atomic and ionic emission, for which the signal-to-background ratio varies significantly along the filament propagation. This is explained by the different rates of increase of plasma density and uranium oxide density along the filament length resulting from spectral and temporal evolution of the filament along its propagation. The results provide a basis for the optimal use of filaments for standoff detection and analysis of uranium isotopes and indicate the potential of the technique for a wider range of remote sensing applications that require isotopic sensitivity.

  20. Effect of nonlinearity in the pass-through optics on femtosecond laser filament in air

    CERN Document Server

    Dergachev, Alexander A; Kandidov, Valery P; Mokrousova, Daria V; Seleznev, Leonid V; Sinitsyn, Dmitry V; Sunchugasheva, Elena S; Shlenov, Svyatoslav A; Shustikova, Anna P

    2014-01-01

    An influence of pass-through optics on femtosecond laser pulse filamentation in ambient air is analyzed for the first time both experimentally and numerically. Propagation of high-power femtosecond laser pulse through solid optical elements introduces spatiotemporal phase modulation due to the Kerr effect. This modulation may have a strong ef-fect on the pulse filamentation in air. We demonstrated that the phase modulation obtained in the thin pass-through dielectric plate reduces the distance to the filament onset and increases the plasma channel length

  1. Modeling the effects of laser-beam smoothing on filamentation and stimulated Brillouin backscattering

    Energy Technology Data Exchange (ETDEWEB)

    Berger, R.L.; Kaiser, T.B.; Lasinski, B.F. [and others

    1996-06-01

    Using the three-dimensional code (F3D), the authors compute the filamentation and backscattering of laser light. The results show that filamentation can be controlled and stimulated Brillouin backscattering (SBBS) can be reduced by using random phase plates (RPP) and small f-numbers or smoothing by spectral dispersion (SSD) with large bandwidth. An interesting result is that, for uniform plasmas, the SBBS amplification takes place over several laser axial coherence lengths (coherence length = speckle length).

  2. A hot X-ray filament associated with A3017 galaxy cluster

    Science.gov (United States)

    Parekh, V.; Durret, F.; Padmanabh, P.; Pandge, M. B.

    2017-09-01

    Recent simulations and observations have shown large-scale filaments in the cosmic web connecting nodes, with accreting materials (baryonic and dark matter) flowing through them. Current high-sensitivity observations also show that the propagation of shocks through filaments can heat them up and make filaments visible between two or more galaxy clusters or around massive clusters, based on optical and/or X-ray observations. We are reporting here the special case of the cluster A3017 associated with a hot filament. The temperature of the filament is 3.4^{-0.77}_{+1.30} keV and its length is ∼1 Mpc. We have analysed its archival Chandra data and report various properties. We also analysed GMRT 235/610 MHz radio data. Radio observations have revealed symmetric two-sided lobes that fill cavities in the A3017 cluster core region, associated with central active galactic nucleus. In the radio map, we also noticed a peculiar linear vertical radio structure in the X-ray filament region which might be associated with a cosmic filament shock. This radio structure could be a radio phoenix or old plasma where an old relativistic population is re-accelerated by shock propagation. Finally, we put an upper limit on the radio luminosity of the filament region.

  3. Respiratory syncytial virus assembles into structured filamentous virion particles independently of host cytoskeleton and related proteins.

    Directory of Open Access Journals (Sweden)

    Fyza Y Shaikh

    Full Text Available Respiratory syncytial virus (RSV is a single-stranded RNA virus that assembles into viral filaments at the cell surface. Virus assembly often depends on the ability of a virus to use host proteins to accomplish viral tasks. Since the fusion protein cytoplasmic tail (FCT is critical for viral filamentous assembly, we hypothesized that host proteins important for viral assembly may be recruited by the FCT. Using a yeast two-hybrid screen, we found that filamin A interacted with FCT, and mammalian cell experiments showed it localized to viral filaments but did not affect viral replication. Furthermore, we found that a number of actin-associated proteins also were excluded from viral filaments. Actin or tubulin cytoskeletal rearrangement was not necessary for F trafficking to the cell surface or for viral assembly into filaments, but was necessary for optimal viral replication and may be important for anchoring viral filaments. These findings suggest that RSV assembly into filaments occurs independently of actin polymerization and that viral proteins are the principal drivers for the mechanical tasks involved with formation of complex, structured RSV filaments at the host cell plasma membrane.

  4. Langmuir wave filamentation in the kinetic regime. I. Filamentation instability of Bernstein-Greene-Kruskal modes in multidimensional Vlasov simulations

    Science.gov (United States)

    Silantyev, Denis A.; Lushnikov, Pavel M.; Rose, Harvey A.

    2017-04-01

    A nonlinear Langmuir wave in the kinetic regime k λ D ≳ 0.2 may have a filamentation instability, where k is the wavenumber and λD is the Debye length. The nonlinear stage of that instability develops into the filamentation of Langmuir waves which in turn leads to the saturation of the stimulated Raman scattering in laser-plasma interaction experiments. Here, we study the linear stage of the filamentation instability of the particular family (H. A. Rose and D. A. Russell, Phys. Plasmas 8, 4784 (2001)) of Bernstein-Greene-Kruskal (BGK) modes (I. B. Bernstein et al., Phys. Rev. 108, 546 (1957)) that is a bifurcation of the linear Langmuir wave. Performing direct 2 + 2D Vlasov-Poisson simulations of collisionless plasma, we find the growth rates of oblique modes of the electric field as a function of BGK's amplitude, wavenumber, and the angle of the oblique mode's wavevector relative to the BGK's wavevector. Simulation results are compared to theoretical predictions.

  5. Towards filament free semiconductor lasers

    DEFF Research Database (Denmark)

    McInerney, John; O'Brien, Peter; Skovgaard, Peter M. W.

    2000-01-01

    We outline physical models and simulations for suppression of self-focusing and filamentation in large aperture semiconductor lasers. The principal technical objective is to generate multi-watt CW or quasi-CW outputs with nearly diffraction limited beams, suitable for long distance free space...... propagation structures in lasers and amplifiers which suppress lateral reflections....

  6. Capillary thinning of polymeric filaments

    DEFF Research Database (Denmark)

    Kolte, Mette Irene; Szabo, Peter

    1999-01-01

    The capillary thinning of filaments of a Newtonian polybutene fluid and a viscoelastic polyisobutylene solution are analyzed experimentally and by means of numerical simulation. The experimental procedure is as follows. Initially, a liquid sample is placed between two cylindrical plates. Then, th...... and quantified. (C) 1999 The Society of Rheology. [S0148-6055(99)00103-0]....

  7. Merger of Long Vortex Filaments

    CERN Document Server

    Khandekar, Akshay

    2012-01-01

    This fluid dynamics video demonstrates the merger of long vortex filaments is shown experimentally. Two counter-rotating vortices are generated using in a tank with very high aspect ratio. PIV demonstrates the merger of the vortices within a single orbit.

  8. Picosecond laser filamentation in air

    Science.gov (United States)

    2016-09-02

    LeibnizUniversityHannover,Welfengarten 1, D-30167Hannover, Germany 3 CEA-DAM,DIF, F-91297Arpajon, France 4 Univ.Bordeaux—CNRS—CEA,Centre Lasers ...optics.arizona.edu Keywords: laser filamentation, picosecond laser pulses, nonlinear propagation, optical ionization Abstract The propagation of intense

  9. Transient filament stretching rheometer II

    DEFF Research Database (Denmark)

    Kolte, Mette Irene; Rasmussen, Henrik K.; Hassager, Ole

    1997-01-01

    The Lagrangian sspecification is used to simulate the transient stretching filament rheometer. Simulations are performed for dilute PIB-solutions modeled as a four mode Oldroyd-B fluid and a semidilute PIB-solution modeled as a non-linear single integral equation. The simulations are compared...

  10. Filament Winding. A Unified Approach

    NARCIS (Netherlands)

    Koussios, S.

    2004-01-01

    In this dissertation we have presented an overview and comprehensive treatment of several facets of the filament winding process. With the concepts of differential geometry and the theory of thin anisotropic shells of revolution, a parametric shape generator has been formulated for the design proced

  11. Role of Intermediate Filaments in Vesicular Traffic

    Directory of Open Access Journals (Sweden)

    Azzurra Margiotta

    2016-04-01

    Full Text Available Intermediate filaments are an important component of the cellular cytoskeleton. The first established role attributed to intermediate filaments was the mechanical support to cells. However, it is now clear that intermediate filaments have many different roles affecting a variety of other biological functions, such as the organization of microtubules and microfilaments, the regulation of nuclear structure and activity, the control of cell cycle and the regulation of signal transduction pathways. Furthermore, a number of intermediate filament proteins have been involved in the acquisition of tumorigenic properties. Over the last years, a strong involvement of intermediate filament proteins in the regulation of several aspects of intracellular trafficking has strongly emerged. Here, we review the functions of intermediate filaments proteins focusing mainly on the recent knowledge gained from the discovery that intermediate filaments associate with key proteins of the vesicular membrane transport machinery. In particular, we analyze the current understanding of the contribution of intermediate filaments to the endocytic pathway.

  12. The role of collisions in the laser filamentation and Weibel instabilities

    Science.gov (United States)

    Bingham, R.; Trines, R.; Norreys, P.; Cairns, R. A.; Silva, L. O.

    2016-10-01

    We report on two instabilities that are associated with inertial fusion, namely the laser filamentation instability and the Weibel instability that can filament the relativistic electron beam in fast ignition. We look at the role collisions have in these instabilities. First we consider the filamentation instability of lasers in high Z plasmas typical of hohlraum targets. The wavelength dependence of the two principal laser filamentation mechanisms, namely the ponderomotive force and Joule heating, are examined and deductions are made of their relative importance for current holhraum experiments. The Joule heating mechanism is important for short wavelengths and high Z materials while the ponderomotive force becomes more important for longer wavelengths and low Z materials. The high Z targets are susceptible to thermal filamentation, creating non-uniform plasmas. The effect of plasma density and laser bandwidth is also examined and reported on. In fast ignition, we show that the Weibel instability growth rate, which drives the filamentation of a relativistic electron beam, is reduced when collisions are considered.

  13. Large-scale Motion of Solar Filaments

    Indian Academy of Sciences (India)

    Pavel Ambrož; Alfred Schroll

    2000-09-01

    Precise measurements of heliographic position of solar filaments were used for determination of the proper motion of solar filaments on the time-scale of days. The filaments have a tendency to make a shaking or waving of the external structure and to make a general movement of whole filament body, coinciding with the transport of the magnetic flux in the photosphere. The velocity scatter of individual measured points is about one order higher than the accuracy of measurements.

  14. Preparation and Characterization of Carbon Filaments

    Science.gov (United States)

    1991-04-01

    catalysts gave straight filaments, while the use of nickel and other catalysts resulted in a variety of vermicular forms of filaments. Ferrocene, (C5H5)2Fe...vapor deposition of carbon filaments is presented along with a theory for the vermicular growth of filaments on quartz substrates. I U I I I I I I...one hour. The experimental details of the matrix and results are discussed, also theories for the role of hydrogen and the vermicular growth of

  15. Analysis of a filament stretching rheometer

    DEFF Research Database (Denmark)

    Kolte, Mette Irene; Rasmussen, Henrik K.; Hassager, Ole

    1996-01-01

    A finite element analysis of the stretching filament rheometer of Tirtaadmadja and Sridhar (1993) is presenetd. Simulations of the stretching of a filament of the polymet test solution, fluid A, between two plates are shown.......A finite element analysis of the stretching filament rheometer of Tirtaadmadja and Sridhar (1993) is presenetd. Simulations of the stretching of a filament of the polymet test solution, fluid A, between two plates are shown....

  16. Role of coherent resonant nonlinear processes in the ultrashort KrF laser pulse propagation and filamentation in air

    Energy Technology Data Exchange (ETDEWEB)

    Smetanin, I.V.; Levchenko, A.O.; Shutov, A.V.; Ustinovskii, N.N. [P.N. Lebedev Physical Institute of Russian Academy of Sciences, 53 Leninskii pr., 119991 Moscow (Russian Federation); Zvorykin, V.D. [P.N. Lebedev Physical Institute of Russian Academy of Sciences, 53 Leninskii pr., 119991 Moscow (Russian Federation); National Research Nuclear University “MEPhI”, 31 Kashirskoe sh., 115409 Moscow (Russian Federation)

    2016-02-15

    Recent experiments on multiple filamentation of sub-picosecond terawatt-level KrF laser pulse in air and multi-photon ionization of air revealed an extremely low electron density in filaments, which is out of the conventional filamentation model considering Kerr self-focusing and plasma de-focusing. We propose here the coherent resonant scattering and ionization processes at the pulse durations significantly less than the polarization relaxation time to be possible explanation of the observed filamentation peculiarities. Namely, we argue that the plasma production results from the resonance enhanced (2+1)-photon ionization of the oxygen molecules through the two-photon excitation of the 3s metastable Rydberg state. Coherent Raman self-scattering at rotational transitions of nitrogen molecules provides self-induced focusing of the ultrashort UV laser pulse and filament formation.

  17. Solar Tornadoes Triggered by Interaction between Filaments and EUV Jets

    Science.gov (United States)

    Chen, Huadong; Zhang, Jun; Ma, Suli; Yan, Xiaoli; Xue, Jianchao

    2017-05-01

    We investigate the formations and evolutions of two successive solar tornadoes in/near AR 12297 during 2015 March 19-20. Recurrent EUV jets close to two filaments were detected along a large-scale coronal loop prior to the appearances of the tornadoes. Under the disturbances from the activities, the filaments continually ascended and finally interacted with the loops tracked by the jets. Subsequently, the structures of the filaments and the loop were merged together, probably via magnetic reconnections, and formed tornado-like structures with a long spiral arm. Our observations suggest that solar tornadoes can be triggered by the interaction between filaments and nearby coronal jets, which has rarely been reported before. At the earlier development phase of the first tornado, about 30 small-scale sub-jets appeared in the tornado’s arm, accompanied by local EUV brightenings. They have an ejection direction approximately vertical to the axis of the arm and a typical maximum speed of ˜280 km s-1. During the ruinations of the two tornadoes, fast plasma outflows from the strong EUV brightenings inside tornadoes are observed, in company with the untangling or unwinding of the highly twisted tornado structures. These observational features indicate that self reconnections probably occurred between the tangled magnetic fields of the tornadoes and resulted in the rapid disintegrations and disappearances of the tornadoes. According to the reconnection theory, we also derive the field strength of the tornado core to be ˜8 G.

  18. Bundling Actin Filaments From Membranes: Some Novel Players

    Directory of Open Access Journals (Sweden)

    Clément eThomas

    2012-08-01

    Full Text Available Progress in live-cell imaging of the cytoskeleton has significantly extended our knowledge about the organization and dynamics of actin filaments near the plasma membrane of plant cells. Noticeably, two populations of filamentous structures can be distinguished. On the one hand, fine actin filaments which exhibit an extremely dynamic behavior basically characterized by fast polymerization and prolific severing events, a process referred to as actin stochastic dynamics. On the other hand, thick actin bundles which are composed of several filaments and which are comparatively more stable although they constantly remodel as well. There is evidence that the actin cytoskeleton plays critical roles in trafficking and signaling at both the cell cortex and organelle periphery but the exact contribution of actin bundles remains unclear. A common view is that actin bundles provide the long-distance tracks used by myosin motors to deliver their cargo to growing regions and accordingly play a particularly important role in cell polarization. However, several studies support that actin bundles are more than simple passive highways and display multiple and dynamic roles in the regulation of many processes, such as cell elongation, polar auxin transport, stomatal and chloroplast movement, and defense against pathogens. The list of identified plant actin-bundling proteins is ever expanding, supporting that plant cells shape structurally and functionally different actin bundles. Here I review the most recently characterized actin-bundling proteins, with a particular focus on those potentially relevant to membrane trafficking and/or signaling.

  19. Microwave processing of ceramic oxide filaments

    Energy Technology Data Exchange (ETDEWEB)

    Vogt, G.J.; Katz, J.D. [Los Alamos National Laboratory, NM (United States)

    1995-05-01

    The objective of the microwave filament processing project is to develop microwave techniques at 2.45 GHZ to manufacture continuous ceramic oxide filaments. Microwave processing uses the volumetric absorption of microwave power in oxide filament tows to drive off process solvents, to burn out organic binders, and to sinter the dried fibers to produce flexible, high-strength ceramic filaments. The technical goal is to advance filament processing technology by microwave heating more rapidly with less energy and at a lower cost than conventional processing, but with the same quality as conventional processing. The manufacturing goal is to collaborate with the 3M Company, a US manufacturer of ceramic oxide filaments, to evaluate the technology using a prototype filament system and to transfer the microwave technology to the 3M Company.

  20. Dynamics of 3D isolated thermal filaments

    CERN Document Server

    Walkden, N R; Militello, F; Omotani, J T

    2016-01-01

    Simulations have been carried out to establish how electron thermal physics, introduced in the form of a dynamic electron temperature, affects isolated filament motion and dynamics in 3D. It is found that thermal effects impact filament motion in two major ways when the filament has a significant temperature perturbation compared to its density perturbation: They lead to a strong increase in filament propagation in the bi-normal direction and a significant decrease in net radial propagation. Both effects arise from the temperature dependence of the sheath current which leads to a non-uniform floating potential, with the latter effect supplemented by faster pressure loss. The reduction in radial velocity can only occur when the filament cross-section loses angular symmetry. The behaviour is observed across different filament sizes and suggests that filaments with much larger temperature perturbations than density perturbations are more strongly confined to the near SOL region.

  1. Dynamics of 3D isolated thermal filaments

    Science.gov (United States)

    Walkden, N. R.; Easy, L.; Militello, F.; Omotani, J. T.

    2016-11-01

    Simulations have been carried out to establish how electron thermal physics, introduced in the form of a dynamic electron temperature, affects isolated filament motion and dynamics in 3D. It is found that thermal effects impact filament motion in two major ways when the pressure perturbation within the filament is supported primarily through a temperature increase as opposed to density: they lead to a strong increase in filament propagation in the bi-normal direction and a significant decrease in net radial propagation. Both effects arise from the temperature dependence of the sheath current which leads to a non-uniform floating potential, with the latter effect supplemented by faster pressure loss. The reduction in radial velocity can only occur when the filament cross-section loses angular symmetry. The behaviour is observed across different filament sizes and suggests that filaments with much larger temperature perturbations than density perturbations are more strongly confined to the near SOL region.

  2. Microwave Probing of Air-Plasma and Plasma Metamaterials

    Science.gov (United States)

    Schneider, Katherine; Rock, Ben; Helle, Mike

    2016-10-01

    Plasma metamaterials are of recent interest due to their unique ability to be engineered with specific electromagnetic responses. One potential metamaterial architecture is based on a `forest' of plasma rods that can be produced using intense laser plasma filaments. In our work, we use a continuous microwave source at 26.5 GHz to measure a single air plasma filament characteristics generated from a 5 mJ laser pulse within a cylindrical hole in a Ka-band waveguide. Preliminary results show the air plasma produces a strong shock and acts to reflect microwave radiation. A computational comparison using 3D EM modeling is performed to examine the reflection and transmission properties of a single plasma rod, and further, to investigate an array of plasma rods as a potential plasma based metamaterial.

  3. Adiabatic Floquet model for the optical response in femtosecond filaments

    CERN Document Server

    Hofmann, Michael

    2016-01-01

    The standard model of femtosecond filamentation is based on phenomenological assumptions which suggest that the ionization-induced carriers can be treated as free according to the Drude model, while the nonlinear response of the bound carriers follows the all-optical Kerr effect. Here, we demonstrate that the additional plasma generated at a multiphoton resonance dominates the saturation of the nonlinear refractive index. Since resonances are not captured by the standard model, we propose a modification of the latter in which ionization enhancements can be accounted for by an ionization rate obtained from non-Hermitian Floquet theory. In the adiabatic regime of long pulse envelopes, this augmented standard model is in excellent agreement with direct quantum mechanical simulations. Since our proposal maintains the structure of the standard model, it can be easily incorporated into existing codes of filament simulation.

  4. Spatial-temporal evolution of the current filamentation instability

    CERN Document Server

    Pathak, V B; Stockem, A; Fonseca, R A; Silva, L O

    2015-01-01

    The spatial-temporal evolution of the purely transverse current filamentation instability is analyzed by deriving a single partial differential equation for the instability and obtaining the analytical solutions for the spatially and temporally growing current filament mode. When the beam front always encounters fresh plasma, our analysis shows that the instability grows spatially from the beam front to the back up to a certain critical beam length; then the instability acquires a purely temporal growth. This critical beam length increases linearly with time and in the non-relativistic regime it is proportional to the beam velocity. In the relativistic regime the critical length is inversely proportional to the cube of the beam Lorentz factor $\\gamma_{0b}$. Thus, in the ultra-relativistic regime the instability immediately acquires a purely temporal growth all over the beam. The analytical results are in good agreement with multidimensional particle-in-cell simulations performed with OSIRIS. Relevance of curr...

  5. Force-induced dynamical properties of multiple cytoskeletal filaments are distinct from that of single filaments

    CERN Document Server

    Das, Dipjyoti; Padinhateeri, Ranjith

    2014-01-01

    How cytoskeletal filaments collectively undergo growth and shrinkage is an intriguing question. Collective properties of multiple bio-filaments (actin or microtubules) undergoing hydrolysis, have not been studied extensively earlier, within simple theoretical frameworks. In this paper, we show that collective properties of multiple filaments under force are very distinct from the properties of a single filament under similar conditions -- these distinctions manifest as follows: (i) the collapse time during collective catastrophe for a multifilament system is much larger than that of a single filament with the same average length, (ii) force-dependence of the cap-size distribution of multiple filaments are quantitatively different from that of single filament, (iii) the diffusion constant associated with the system length fluctuations is distinct for multiple filaments, (iv) switching dynamics of multiple filaments between capped and uncapped states and the fluctuations therein are also distinct. We build a un...

  6. Numerical investigation of isolated filament motion in a realistic tokamak geometry

    CERN Document Server

    Walkden, N R; Easy, L; Fishpool, G; Omotani, J T

    2015-01-01

    This paper presents a numerical investigation of isolated filament dynamics in a simulation geometry representative of the scrape-off layer (SOL) of the Mega Amp Spherical Tokamak (MAST) previously studied in [N.R.Walkden et.al, Plasma Phys. Control. Fusion, 55 (2013) 105005]. This paper focuses on the evolution of filament cross-sections at the outboard midplane and investigates the scaling of the centre of mass velocity of the filament cross-section with filament width and electron temperature. By decoupling the vorticity equation into even and odd parity components about the centre of the filament in the bi-normal direction parallel density gradients are shown to drive large velocities in the bi-normal (approximately poloidal) direction which scale linearly with electron temperature. In this respect increasing the electron temperature causes a departure of the filament dynamics from 2D behaviours. Despite the strong impact of 3D effects the radial motion of the filament is shown to be relatively well predi...

  7. Challenging Some Contemporary Views of Coronal Mass Ejections. II. The Case for Absent Filaments

    Science.gov (United States)

    Howard, T. A.; DeForest, C. E.; Schneck, U. G.; Alden, C. R.

    2017-01-01

    When a coronal mass ejection (CME) appears in a coronagraph it often exhibits three parts. This “classic” three-part configuration consists of a bright leading edge, a dark circular- or teardrop-shaped cavity, and a bright core within the cavity. It is generally accepted that these are manifestations of coronal plasma pileup, the driving magnetic flux rope, and the associated eruptive filament, respectively. The latter has become accepted by the community since coronagraph CMEs have been commonly associated with eruptive filaments for over 40 years. In this second part of our series challenging views on CMEs, we present the case that the inner core of the three-part coronagraph CME may not be, and in the most common cases is not, a filament. We present our case in the form of four exhibits showing that most of the CMEs in a broad survey are not associated with an eruptive filament at the Sun, and that the cores of those CMEs that are filament-associated do not geometrically resemble or consist of material from the associated filament. We conclude with a discussion on the possible causes of the bright CME core and what happens to the filament material postlaunch. We discuss how the CME core could arise spontaneously from the eruption of a flux rope from the Sun, or could be the result of a mathematical caustic produced by the geometric projection of a twisted flux rope.

  8. Flux Cancellation and the Evolution of the Eruptive Filament of 2011 June 7

    Science.gov (United States)

    Yardley, S. L.; Green, L. M.; Williams, D. R.; van Driel-Gesztelyi, L.; Valori, G.; Dacie, S.

    2016-08-01

    We investigate whether flux cancellation is responsible for the formation of a very massive filament resulting in the spectacular eruption on 2011 June 7. We analyze and quantify the amount of flux cancellation that occurs in NOAA AR 11226 and its two neighboring active regions (ARs 11227 & 11233) using line-of-sight magnetograms from the Heliospheric Magnetic Imager. During a 3.6 day period building up to the eruption of the filament, 1.7 × 1021 Mx, 21% of AR 11226's maximum magnetic flux, was canceled along the polarity inversion line (PIL) where the filament formed. If the flux cancellation continued at the same rate up until the eruption then up to 2.8 × 1021 Mx (34% of the AR flux) may have been built into the magnetic configuration that contains the filament plasma. The large flux cancellation rate is due to an unusual motion of the positive-polarity sunspot, which splits, with the largest section moving rapidly toward the PIL. This motion compresses the negative polarity and leads to the formation of an orphan penumbra where one end of the filament is rooted. Dense plasma threads above the orphan penumbra build into the filament, extending its length, and presumably injecting material into it. We conclude that the exceptionally strong flux cancellation in AR 11226 played a significant role in the formation of its unusually massive filament. In addition, the presence and coherent evolution of bald patches in the vector magnetic field along the PIL suggest that the magnetic field configuration supporting the filament material is that of a flux rope.

  9. Mechanical properties of branched actin filaments

    CERN Document Server

    Razbin, Mohammadhosein; Benetatos, Panayotis; Zippelius, Annette

    2015-01-01

    Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures. We investigate the force-extension relation of branched filaments, grafted on an elastic structure at one end and pushing with the free ends against the leading edge cell membrane. Single filaments are modeled as worm-like chains, whose thermal bending fluctuations are restricted by the leading edge cell membrane, resulting in an effective force. Branching can increase the stiffness considerably; however the effect depends on branch point position and filament orientation, being most pronounced for intermediate tilt angles and intermediate branch point positions. We describe filament networks without cross-linkers to focus on the effect of branching. We use randomly positioned branch points, as generated in the process of treadmilling, and orientation distributions as measur...

  10. Muscle myosin filaments: cores, crowns and couplings.

    Science.gov (United States)

    Squire, John M

    2009-09-01

    Myosin filaments in muscle, carrying the ATPase myosin heads that interact with actin filaments to produce force and movement, come in multiple varieties depending on species and functional need, but most are based on a common structural theme. The now successful journeys to solve the ultrastructures of many of these myosin filaments, at least at modest resolution, have not been without their false starts and erroneous sidetracks, but the picture now emerging is of both diversity in the rotational symmetries of different filaments and a degree of commonality in the way the myosin heads are organised in resting muscle. Some of the remaining differences may be associated with how the muscle is regulated. Several proteins in cardiac muscle myosin filaments can carry mutations associated with heart disease, so the elucidation of myosin filament structure to understand the effects of these mutations has a clear and topical clinical relevance.

  11. Filamentous Biological Entities Obtained from the Stratosphere

    Science.gov (United States)

    Wainwright, Milton; Rose, Christopher E.; Baker, Alexander J.; Wickramasinghe, N. Chandra

    2013-03-01

    We previously reported the presence of large, non-filamentous, biological entities including a diatom fragment in the stratosphere at heights of between 22-27km. Here we report clear evidence for the presence of filamentous entities associated with a relatively large particle mass collected from the stratosphere. Although viable fungi have previously been isolated from the stratosphere, this is the first report of a filamentous microorganism being observed in situ on a stratospheric particle mass.

  12. Solubilization and fractionation of paired helical filaments.

    Science.gov (United States)

    González, P J; Correas, I; Avila, J

    1992-09-01

    Paired helical filaments isolated from brains of two different patients with Alzheimer's disease were extensively treated with the ionic detergent, sodium dodecyl sulphate. Filaments were solubilized at different extents, depending on the brain examined, thus suggesting the existence of two types of paired helical filaments: sodium dodecyl sulphate-soluble and insoluble filaments. In the first case, the number of structures resembling paired helical filaments greatly decreased after the detergent treatment, as observed by electron microscopy. Simultaneously, a decrease in the amount of sedimentable protein was also observed upon centrifugation of the sodium dodecyl sulfate-treated paired helical filaments. A sodium dodecyl sulphate-soluble fraction was isolated as a supernatant after low-speed centrifugation of the sodium dodecyl sulphate-treated paired helical filaments. The addition of the non-ionic detergent Nonidet-P40 to this fraction resulted in the formation of paired helical filament-like structures. When the sodium dodecyl sulphate-soluble fraction was further fractionated by high-speed centrifugation, three subfractions were observed: a supernatant, a pellet and a thin layer between these two subfractions. No paired helical filaments were observed in any of these subfractions, even after addition of Nonidet P-40. However, when they were mixed back together, the treatment with Nonidet P-40 resulted in the visualization of paired helical filament-like structures. These results suggest that at least two different components are needed for the reconstitution of paired helical filaments as determined by electron microscopy. The method described here may allow the study of the components involved in the formation of paired helical filaments and the identification of possible factors capable of blocking this process.

  13. Equilibrium shapes of twisted magnetic filaments

    Energy Technology Data Exchange (ETDEWEB)

    Belovs, Mihails; Cirulis, Teodors; Cebers, Andrejs [University of Latvia, Zellu 8, LV-1002 (Latvia)], E-mail: aceb@tesla.sal.lv

    2009-06-12

    It is shown that ferromagnetic filaments with free and unclamped ends undergo buckling instabilities under the action of twist. Solutions of nonlinear equations describing the buckled shapes are found, and it is shown that the transition to the buckled shape is subcritical if the magnetization is parallel to the field and supercritical when the magnetization of the straight filament is opposite to the external field. Solutions with the localized curvature distribution are found in the case of long filaments. The class of solutions corresponding to helices is described, and the behavior of coiled ferromagnetic and superparamagnetic filaments is compared.

  14. Hydrodynamic interactions between nearby slender filaments

    CERN Document Server

    Man, Yi; Lauga, Eric

    2016-01-01

    Cellular biology abound with filaments interacting through fluids, from intracellular microtubules, to rotating flagella and beating cilia. While previous work has demonstrated the complexity of capturing nonlocal hydrodynamic interactions between moving filaments, the problem remains difficult theoretically. We show here that when filaments are closer to each other than their relevant length scale, the integration of hydrodynamic interactions can be approximately carried out analytically. This leads to a set of simplified local equations, illustrated on a simple model of two interacting filaments, which can be used to tackle theoretically a range of problems in biology and physics.

  15. Probing the Physical Structures of Dense Filaments

    Science.gov (United States)

    Li, Di

    2015-08-01

    Filament is a common feature in cosmological structures of various scales, ranging from dark matter cosmic web, galaxy clusters, inter-galactic gas flows, to Galactic ISM clouds. Even within cold dense molecular cores, filaments have been detected. Theories and simulations with (or without) different combination of physical principles, including gravity, thermal balance, turbulence, and magnetic field, can reproduce intriguing images of filaments. The ubiquity of filaments and the similarity in simulated ones make physical parameters, beyond dust column density, a necessity for understanding filament evolution. I report three projects attempting to measure physical parameters of filaments. We derive the volume density of a dense Taurus filament based on several cyanoacetylene transitions observed by GBT and ART. We measure the gas temperature of the OMC 2-3 filament based on combined GBT+VLA ammonia images. We also measured the sub-millimeter polarization vectors along OMC3. These filaments were found to be likely a cylinder-type structure, without dynamic heating, and likely accreting mass along the magnetic field lines.

  16. Deep coronal hole associated with quiescent filament

    Science.gov (United States)

    Kesumaningrum, Rasdewita; Herdiwidjaya, Dhani

    2014-03-01

    We present a study of the morphology of quiescent filament observed by H-alpha Solar Telescope at Bosscha Observatory in association with coronal hole observed by Atmospheric Imaging Assembly (AIA) instrument in 193 Å from Solar Dynamics Observatory. H-alpha images were processed by imaging softwares, namely Iris 5.59 and ImageJ, to enhance the signal to noise ratio and to identify the filament features associated with coronal hole. For images observed on October 12, 2011, November 14, 2011 and January 2, 2012, we identified distinct features of coronal holes above the quiescent filaments. This associated coronal holes have filament-like morphology with a thick long thread as it's `spine', defined as Deep Coronal Hole. Because of strong magnetic field of sunspot, these filaments and coronal holes emerged far from active region and lasted for several days. It is interesting as for segmented filament, deep coronal holes above the filaments lasted for a quite long period of time and merged. This association between filament and deep coronal hole can be explained by filament magnetic loop.

  17. Reactive fluxes delivered by dielectric barrier discharge filaments to slightly wounded skin

    Science.gov (United States)

    Babaeva, Natalia Yu; Kushner, Mark J.

    2013-01-01

    The application of atmospheric-pressure plasmas to human tissue has been shown to have therapeutic effects for wound healing and in treatment of skin diseases. In this paper, we report on a computational study of the intersection of plasma filaments in a dielectric barrier discharge (DBD) with a small wound in human skin in the context of plasma medicine. The wound is represented as a small cut in the epidermal layer of cells. Intracellular structures and their electrical properties were incorporated into the two-dimensional computational mesh in order to self-consistently couple gas phase plasma transport with the charging of the surface of the wound. We quantify the fluxes of reactive oxygen and nitrogen species, ions and photons produced in or diffusing into the wound as might occur during the first few discharge pulses of treatment. Comparison is made to fluxes predicted by global modelling. We show that the relative location of the plasma filament with respect to the wound is important on plasma time scales (ns) for ions and photons, and for radicals directly produced by electron impact processes. On the longer-term diffusion time scales (ms) the position of the plasma filament relative to the wound is not so critical. For typical DBD conditions, the magnitude of these fluxes to the cellular surfaces corresponds to fluences of radicals nearly equal to the surface site density. These results imply that the biological reactivity is limited by reaction probabilities and not the availability of radical fluxes.

  18. Merging of plasma currents

    NARCIS (Netherlands)

    Bergmans, J.; Schep, T. J.

    2001-01-01

    The merging process of current filaments in a strongly magnetized plasma is described. The evolution is calculated using a contour dynamics method, which accurately tracks piecewise constant distributions of the conserved quantities. In the interaction of two screened currents, both develop dipolar

  19. Filamentation with nonlinear Bessel vortices.

    Science.gov (United States)

    Jukna, V; Milián, C; Xie, C; Itina, T; Dudley, J; Courvoisier, F; Couairon, A

    2014-10-20

    We present a new type of ring-shaped filaments featured by stationary nonlinear high-order Bessel solutions to the laser beam propagation equation. Two different regimes are identified by direct numerical simulations of the nonlinear propagation of axicon focused Gaussian beams carrying helicity in a Kerr medium with multiphoton absorption: the stable nonlinear propagation regime corresponds to a slow beam reshaping into one of the stationary nonlinear high-order Bessel solutions, called nonlinear Bessel vortices. The region of existence of nonlinear Bessel vortices is found semi-analytically. The influence of the Kerr nonlinearity and nonlinear losses on the beam shape is presented. Direct numerical simulations highlight the role of attractors played by nonlinear Bessel vortices in the stable propagation regime. Large input powers or small cone angles lead to the unstable propagation regime where nonlinear Bessel vortices break up into an helical multiple filament pattern or a more irregular structure. Nonlinear Bessel vortices are shown to be sufficiently intense to generate a ring-shaped filamentary ionized channel in the medium which is foreseen as opening the way to novel applications in laser material processing of transparent dielectrics.

  20. A Zoo of Radio Relics: Cluster Cores to Filaments

    Indian Academy of Sciences (India)

    Ruta Kale; K. S. Dwarakanath

    2011-12-01

    Radio relics in galaxy clusters can be electrons accelerated at cluster merger shocks or adiabatically compressed fossil radio cocoons or dying radio galaxies. The spectral evolution of radio relics is affected by the surrounding thermal plasma. We present a low frequency study of three radio relics representing environments of dense cluster core (A4038), cluster outskirts (A1664) and filaments (A786). The properties of the relics are found to be consistent with the effect of confinement by external medium if the effects of projection are ignored.

  1. Filament poisoning at typical carbon nanotube deposition conditions by hot-filament CVD

    CSIR Research Space (South Africa)

    Oliphant, CJ

    2009-05-01

    Full Text Available This paper reports on the poisoning of tungsten filaments during the hot-filament chemical vapour deposition process at typical carbon nanotube (CNT) deposition conditions and filament temperatures ranging from 1400 to 2000 °C. The morphological...

  2. Spectral stability of Alfven filament chains

    NARCIS (Netherlands)

    Bergmans, J.; Kuvshinov, B. N.; Lakhin, V. P.; Schep, T. J.

    2000-01-01

    The two-fluid model of nonlinear Alfven perturbations has singular solutions in the form of current-vortex filaments. We investigate analytically and numerically the spectral stability of single and double rows of filaments. Staggered and non-staggered double rows (von Karman streets) are studied. I

  3. Reconstitution of the muscle thin filament from recombinant troponin components and the native thin filaments.

    Science.gov (United States)

    Matsumoto, Fumiko; Deshimaru, Shungo; Oda, Toshiro; Fujiwara, Satoru

    2010-04-15

    We have developed a technique by which muscle thin filaments are reconstituted from the recombinant troponin components and the native thin filaments. By this technique, the reconstituted troponin complex is exchanged into the native thin filaments in the presence of 20% glycerol and 0.3M KCl at pH 6.2. More than 90% of endogenous troponin complex was replaced with the recombinant troponin complex. Structural integrity and Ca(2+) sensitivity of the reconstituted thin filament prepared by this technique was confirmed by X-ray fiber diffraction measurements and the thin filament-activated myosin subfragment 1 ATPase measurements, respectively.

  4. Desmin filaments in the electrocytes of the electric organ of the electric eel Electrophorus electricus.

    Science.gov (United States)

    Cordeiro, M C; Benchimol, M; Mermelstein, C S; Sá, L A; Faria, M V; Chagas, C; Neto, V M

    1996-09-01

    Desmin protein is an abundant constituent of the intermediate filaments in the electrocytes of the electric organ of the electric eel Electrophorus electricus. Polyclonal antibodies were raised against purified desmin from the electric organ and used for immunolabeling of the protein in reconstituted filaments. In thick sections of the main electric organ that has been stained with fluorescein-labeled desmin-specific antibodies, light microscope revealed a diffuse meshwork of desmin filaments dispersed in the cytoplasm of electrocytes. In the region under the membrane, the immunostaining was slightly more intense than elsewhere. The meshwork of intermediate filaments composed of desmin was examined by electron microscopy of the main electric organ. Immuno-gold labeling demonstrated a widespread meshwork of desmin filaments in the cytoplasm and in close association with the plasma membrane. These observations suggest that intermediate filaments play a role in the maintenance of the morphology of electrocytes and, as an intracellular meshwork spanning the width of the cell, they may contribute to the organization of the intracellular compartments.

  5. Self-organization of actin filament orientation in the dendritic-nucleation/array-treadmilling model.

    Science.gov (United States)

    Schaus, Thomas E; Taylor, Edwin W; Borisy, Gary G

    2007-04-24

    The dendritic-nucleation/array-treadmilling model provides a conceptual framework for the generation of the actin network driving motile cells. We have incorporated it into a 2D, stochastic computer model to study lamellipodia via the self-organization of filament orientation patterns. Essential dendritic-nucleation submodels were incorporated, including discretized actin monomer diffusion, Monte-Carlo filament kinetics, and flexible filament and plasma membrane mechanics. Model parameters were estimated from the literature and simulation, providing values for the extent of the leading edge-branching/capping-protective zone (5.4 nm) and the autocatalytic branch rate (0.43/sec). For a given set of parameters, the system evolved to a steady-state filament count and velocity, at which total branching and capping rates were equal only for specific orientations; net capping eliminated others. The standard parameter set evoked a sharp preference for the +/-35 degree filaments seen in lamellipodial electron micrographs, requiring approximately 12 generations of successive branching to adapt to a 15 degree change in protrusion direction. This pattern was robust with respect to membrane surface and bending energies and to actin concentrations but required protection from capping at the leading edge and branching angles >60 degrees. A +70/0/-70 degree pattern was formed with flexible filaments approximately 100 nm or longer and with velocities < approximately 20% of free polymerization rates.

  6. An estimate of the electron density in filaments of galaxies at z~0.1

    CERN Document Server

    Fraser-McKelvie, Amelia; Lazendic, Jasmina S

    2011-01-01

    Most of the baryons in the Universe are thought to be contained within filaments of galaxies, but as yet, no single study has published the observed properties of a large sample of known filaments to determine typical physical characteristics such as temperature and electron density. This paper presents a comprehensive large-scale search conducted for X-ray emission from a population of 41 bona fide filaments of galaxies to determine their X-ray flux and electron density. The sample is generated from Pimbblet et al.'s (2004) filament catalogue, which is in turn sourced from the 2 degree Field Galaxy Redshift Survey (2dFGRS). Since the filaments are expected to be very faint and of very low density, we used stacked ROSAT All-Sky Survey data. We detect a net surface brightness from our sample of filaments of (1.6 +/- 0.1) x 10^{-14} erg cm^{-2} s^{-1} arcmin^{-1} in the 0.9-1.3 keV energy band for 1 keV plasma, which implies an electron density of n_{e} = (4.7 +/- 0.2) x 10^{-4} h_{100}^{1/2} cm^{-3}. Finally, ...

  7. Quantifying protein diffusion and capture on filaments

    CERN Document Server

    Reithmann, Emanuel; Frey, Erwin

    2015-01-01

    The functional relevance of regulating proteins is often limited to specific binding sites such as the ends of microtubules or actin-filaments. A localization of proteins on these functional sites is of great importance. We present a quantitative theory for a diffusion and capture process, where proteins diffuse on a filament and stop diffusing when reaching the filament's end. It is found that end-association after one-dimensional diffusion is the main source for tip-localization of such proteins. As a consequence, diffusion and capture is highly efficient in enhancing the reaction velocity of enzymatic reactions, where proteins and filament ends are to each other as enzyme and substrate. We show that the reaction velocity can effectively be described within a Michaelis-Menten framework. Together one-dimensional diffusion and capture beats the (three-dimensional) Smoluchowski diffusion limit for the rate of protein association to filament ends.

  8. Theory of Semiflexible Filaments and Networks

    Directory of Open Access Journals (Sweden)

    Fanlong Meng

    2017-02-01

    Full Text Available We briefly review the recent developments in the theory of individual semiflexible filaments, and of a crosslinked network of such filaments, both permanent and transient. Starting from the free energy of an individual semiflexible chain, models on its force-extension relation and other mechanical properties such as Euler buckling are discussed. For a permanently crosslinked network of filaments, theories on how the network responds to deformation are provided, with a focus on continuum approaches. Characteristic features of filament networks, such as nonlinear stress-strain relation, negative normal stress, tensegrity, and marginal stability are discussed. In the new area of transient filament network, where the crosslinks can be dynamically broken and re-formed, we show some recent attempts for understanding the dynamics of the crosslinks, and the related rheological properties, such as stress relaxation, yield stress and plasticity.

  9. Natural colorants from filamentous fungi.

    Science.gov (United States)

    Torres, Fábio Aurélio Esteves; Zaccarim, Bruna Regina; de Lencastre Novaes, Letícia Celia; Jozala, Angela Faustino; Dos Santos, Carolina Alves; Teixeira, Maria Francisca Simas; Santos-Ebinuma, Valéria Carvalho

    2016-03-01

    In the last years, there is a trend towards the replacement of synthetic colorants by natural ones, mainly due to the increase of consumer demand for natural products. The natural colorants are used to enhance the appearance of pharmaceutical products, food, and different materials, making them preferable or attractive. This review intends to provide and describe a comprehensive overview of the history of colorants, from prehistory to modern time, of their market and their applications, as well as of the most important aspects of the fermentation process to obtain natural colorants. Focus is given to colorants produced by filamentous fungal species, aiming to demonstrate the importance of these microorganisms and biocompounds, highlighting the production performance to get high yields and the aspects of conclusion that should be taken into consideration in future studies about natural colorants.

  10. Particles trajectories in magnetic filaments

    CERN Document Server

    Bret, Antoine

    2015-01-01

    The motion of a particle in a spatially harmonic magnetic field is a basic problem involved, for example, in the mechanism of formation of a collisionless shock. In such settings, it is generally reasoned that particles entering a Weibel generated turbulence are trapped inside it, provided their Larmor radius in the peak field is smaller than the field coherence length. The goal of this work is to put this heuristic conclusion on firm ground by studying, both analytically and numerically, such motion. A toy model is analyzed, consisting of a relativistic particle entering a region of space occupied by a spatially harmonic field. The particle penetrates the magnetic structure in a direction aligned with the magnetic filaments. Although the conclusions are not trivial, the main result is confirmed.

  11. Filamentous Growth in Eremothecium Fungi

    DEFF Research Database (Denmark)

    Oskarsson, Therese

    , this thesis deals with some of the aspects of hyphal growth, which is an important virulence factor for pathogenic fungi infecting both humans and plants. Hyphal establishment through continuous polar growth is a complex process, requiring the careful coordination of a large subset of proteins involved......-regulatory activity of AgGts1, the protein could have additional actin organizing properties. In the second and third part, this thesis addresses the use of A. gossypii and its relative E. cymbalariae as model organisms for filamentous growth. A series of assays analyzed the capability of Eremothecium genus fungi...... of molecular tools for E. cymbalariae to enable a faster and more efficient approach for genetic comparisons between Eremothecium genus fungi....

  12. Filamentous Growth in Eremothecium Fungi

    DEFF Research Database (Denmark)

    Oskarsson, Therese

    , this thesis deals with some of the aspects of hyphal growth, which is an important virulence factor for pathogenic fungi infecting both humans and plants. Hyphal establishment through continuous polar growth is a complex process, requiring the careful coordination of a large subset of proteins involved......-regulatory activity of AgGts1, the protein could have additional actin organizing properties. In the second and third part, this thesis addresses the use of A. gossypii and its relative E. cymbalariae as model organisms for filamentous growth. A series of assays analyzed the capability of Eremothecium genus fungi...... of molecular tools for E. cymbalariae to enable a faster and more efficient approach for genetic comparisons between Eremothecium genus fungi....

  13. Particles trajectories in magnetic filaments

    Energy Technology Data Exchange (ETDEWEB)

    Bret, A. [ETSI Industriales, Universidad de Castilla-La Mancha, 13071 Ciudad Real (Spain); Instituto de Investigaciones Energéticas y Aplicaciones Industriales, Campus Universitario de Ciudad Real, 13071 Ciudad Real (Spain)

    2015-07-15

    The motion of a particle in a spatially harmonic magnetic field is a basic problem involved, for example, in the mechanism of formation of a collisionless shock. In such settings, it is generally reasoned that particles entering a Weibel generated turbulence are trapped inside it, provided their Larmor radius in the peak field is smaller than the field coherence length. The goal of this work is to put this heuristic conclusion on firm ground by studying, both analytically and numerically, such motion. A toy model is analyzed, consisting of a relativistic particle entering a region of space occupied by a spatially harmonic field. The particle penetrates the magnetic structure in a direction aligned with the magnetic filaments. Although the conclusions are not trivial, the main result is confirmed.

  14. Optical diagnostics of femtosecond laser plasmas

    Institute of Scientific and Technical Information of China (English)

    李玉同; 张杰; 陈黎明; 夏江帆; 腾浩; 赵理曾; 林景全; 李英骏; 魏志义; 王龙; 江文勉

    2001-01-01

    Optical diagnostics of evolution of plasmas produced by ultrashort laser pulses is carried out using a femtosecond probing beam. The time sequence of plasma shadowgrams and interferograms are obtained. The filamentation instability in high_density region induces the local density modification. Large_scale toroidal magnetic fields confine plasma expansion in the transverse direction, resulting in the formation of a plasma jet. The plasma expansion along the target normal direction is found to scale as 1 2.

  15. 3D Evolution of a Filament Disappearance Event Observed by STEREO

    Science.gov (United States)

    Gosain, S.; Schmieder, B.; Venkatakrishnan, P.; Chandra, R.; Artzner, G.

    2009-10-01

    A filament disappearance event was observed on 22 May 2008 during our recent campaign JOP 178. The filament, situated in the Southern Hemisphere, showed sinistral chirality consistent with the hemispheric rule. The event was well observed by several observatories, in particular by THEMIS. One day, before the disappearance, Hα observations showed up- and down-flows in adjacent locations along the filament, which suggest plasma motions along twisted flux rope. THEMIS and GONG observations show shearing photospheric motions leading to magnetic flux canceling around barbs. STEREO A, B spacecraft with separation angle 52.4°, showed quite different views of this untwisting flux rope in He ii 304 Å images. Here, we reconstruct the three-dimensional geometry of the filament during its eruption phase using STEREO EUV He ii 304 Å images and find that the filament was highly inclined to the solar normal. The He ii 304 Å movies show individual threads, which oscillate and rise to an altitude of about 120 Mm with apparent velocities of about 100 km s-1 during the rapid evolution phase. Finally, as the flux rope expands into the corona, the filament disappears by becoming optically thin to undetectable levels. No CME was detected by STEREO, only a faint CME was recorded by LASCO at the beginning of the disappearance phase at 02:00 UT, which could be due to partial filament eruption. Further, STEREO Fe xii 195 Å images showed bright loops beneath the filament prior to the disappearance phase, suggesting magnetic reconnection below the flux rope.

  16. Multi-code analysis of scrape-off layer filament dynamics in MAST

    Science.gov (United States)

    Militello, F.; Walkden, N. R.; Farley, T.; Gracias, W. A.; Olsen, J.; Riva, F.; Easy, L.; Fedorczak, N.; Lupelli, I.; Madsen, J.; Nielsen, A. H.; Ricci, P.; Tamain, P.; Young, J.

    2016-11-01

    Four numerical codes are employed to investigate the dynamics of scrape-off layer filaments in tokamak relevant conditions. Experimental measurements were taken in the MAST device using visual camera imaging, which allows the evaluation of the perpendicular size and velocity of the filaments, as well as the combination of density and temperature associated with the perturbation. A new algorithm based on the light emission integrated along the field lines associated with the position of the filament is developed to ensure that it is properly detected and tracked. The filaments are found to have velocities of the order of 1~\\text{km}~{{\\text{s}}-1} , a perpendicular diameter of around 2-3 cm and a density amplitude 2-3.5 times the background plasma. 3D and 2D numerical codes (the STORM module of BOUT++, GBS, HESEL and TOKAM3X) are used to reproduce the motion of the observed filaments with the purpose of validating the codes and of better understanding the experimental data. Good agreement is found between the 3D codes. The seeded filament simulations are also able to reproduce the dynamics observed in experiments with accuracy up to the experimental errorbar levels. In addition, the numerical results showed that filaments characterised by similar size and light emission intensity can have quite different dynamics if the pressure perturbation is distributed differently between density and temperature components. As an additional benefit, several observations on the dynamics of the filaments in the presence of evolving temperature fields were made and led to a better understanding of the behaviour of these coherent structures.

  17. Variation of plasma parameters in a modified mode of plasma production in a double plasma device

    Indian Academy of Sciences (India)

    A Phukan; M K Mishra; B K Saikia; M Chakraborty

    2010-03-01

    A modified mode of plasma production in a double plasma device is presented and plasma parameters are controlled in this configuration. Here plasma is produced by applying a discharge voltage between the hot filaments in the source (cathode) and the target magnetic cage (anode) of the device. In this configuration, the hot electron emitting filaments are present only in the source and the magnetic cage of this is kept at a negative bias such that due to the repulsion of the cage bias, the primary electrons can go to the grounded target and produce plasma there. The plasma parameters can be controlled by varying the voltages applied to the source magnetic cage and the separation grid of the device.

  18. Automatic Detect and Trace of Solar Filaments

    Science.gov (United States)

    Fang, Cheng; Chen, P. F.; Tang, Yu-hua; Hao, Qi; Guo, Yang

    We developed a series of methods to automatically detect and trace solar filaments in solar Hα images. The programs are able to not only recognize filaments and determine their properties, such as the position, the area and other relevant parameters, but also to trace the daily evolution of the filaments. For solar full disk Hα images, the method consists of three parts: first, preprocessing is applied to correct the original images; second, the Canny edge-detection method is used to detect the filaments; third, filament properties are recognized through the morphological operators. For each Hα filament and its barb features, we introduced the unweighted undirected graph concept and adopted Dijkstra shortest-path algorithm to recognize the filament spine; then, using polarity inversion line shift method for measuring the polarities in both sides of the filament to determine the filament axis chirality; finally, employing connected components labeling method to identify the barbs and calculating the angle between each barb and spine to indicate the barb chirality. Our algorithms are applied to the observations from varied observatories, including the Optical & Near Infrared Solar Eruption Tracer (ONSET) in Nanjing University, Mauna Loa Solar Observatory (MLSO) and Big Bear Solar Observatory (BBSO). The programs are demonstrated to be effective and efficient. We used our method to automatically process and analyze 3470 images obtained by MLSO from January 1998 to December 2009, and a butterfly diagram of filaments is obtained. It shows that the latitudinal migration of solar filaments has three trends in the Solar Cycle 23: The drift velocity was fast from 1998 to the solar maximum; after the solar maximum, it became relatively slow and after 2006, the migration became divergent, signifying the solar minimum. About 60% filaments with the latitudes larger than 50 degree migrate towards the Polar Regions with relatively high velocities, and the latitudinal migrating

  19. Unwinding motion of a twisted active region filament

    Energy Technology Data Exchange (ETDEWEB)

    Yan, X. L.; Xue, Z. K.; Kong, D. F. [Yunnan Observatories, Chinese Academy of Sciences, Kunming 650011 (China); Liu, J. H. [Department of Physics, Shijiazhuang University, Shijiazhuang 050035 (China); Xu, C. L. [Yunnan Normal University, Kunming 650092 (China)

    2014-12-10

    To better understand the structures of active region filaments and the eruption process, we study an active region filament eruption in active region NOAA 11082 in detail on 2010 June 22. Before the filament eruption, the opposite unidirectional material flows appeared in succession along the spine of the filament. The rising of the filament triggered two B-class flares at the upper part of the filament. As the bright material was injected into the filament from the sites of the flares, the filament exhibited a rapid uplift accompanying the counterclockwise rotation of the filament body. From the expansion of the filament, we can see that the filament consisted of twisted magnetic field lines. The total twist of the filament is at least 5π obtained by using a time slice method. According to the morphology change during the filament eruption, it is found that the active region filament was a twisted flux rope and its unwinding motion was like a solar tornado. We also find that there was a continuous magnetic helicity injection before and during the filament eruption. It is confirmed that magnetic helicity can be transferred from the photosphere to the filament. Using the extrapolated potential fields, the average decay index of the background magnetic fields over the filament is 0.91. Consequently, these findings imply that the mechanism of solar filament eruption could be due to the kink instability and magnetic helicity accumulation.

  20. Unwinding Motion of a Twisted Active Region Filament

    Science.gov (United States)

    Yan, X. L.; Xue, Z. K.; Liu, J. H.; Kong, D. F.; Xu, C. L.

    2014-12-01

    To better understand the structures of active region filaments and the eruption process, we study an active region filament eruption in active region NOAA 11082 in detail on 2010 June 22. Before the filament eruption, the opposite unidirectional material flows appeared in succession along the spine of the filament. The rising of the filament triggered two B-class flares at the upper part of the filament. As the bright material was injected into the filament from the sites of the flares, the filament exhibited a rapid uplift accompanying the counterclockwise rotation of the filament body. From the expansion of the filament, we can see that the filament consisted of twisted magnetic field lines. The total twist of the filament is at least 5π obtained by using a time slice method. According to the morphology change during the filament eruption, it is found that the active region filament was a twisted flux rope and its unwinding motion was like a solar tornado. We also find that there was a continuous magnetic helicity injection before and during the filament eruption. It is confirmed that magnetic helicity can be transferred from the photosphere to the filament. Using the extrapolated potential fields, the average decay index of the background magnetic fields over the filament is 0.91. Consequently, these findings imply that the mechanism of solar filament eruption could be due to the kink instability and magnetic helicity accumulation.

  1. Striation and convection in penumbral filaments

    Science.gov (United States)

    Spruit, H. C.; Scharmer, G. B.; Löfdahl, M. G.

    2010-10-01

    Observations with the 1-m Swedish Solar Telescope of the flows seen in penumbral filaments are presented. Time sequences of bright filaments show overturning motions strikingly similar to those seen along the walls of small isolated structures in the active regions. The filaments show outward propagating striations with inclination angles suggesting that they are aligned with the local magnetic field. We interpret it as the equivalent of the striations seen in the walls of small isolated magnetic structures. Their origin is then a corrugation of the boundary between an overturning convective flow inside the filament and the magnetic field wrapping around it. The outward propagation is a combination of a pattern motion due to the downflow observed along the sides of bright filaments, and the Evershed flow. The observed short wavelength of the striation argues against the existence of a dynamically significant horizontal field inside the bright filaments. Its intensity contrast is explained by the same physical effect that causes the dark cores of filaments, light bridges and “canals”. In this way striation represents an important clue to the physics of penumbral structure and its relation with other magnetic structures on the solar surface. We put this in perspective with results from the recent 3-D radiative hydrodynamic simulations. 4 movies are only available in electronic form at http://www.aanda.org

  2. Filamentation of Campylobacter in broth cultures

    Directory of Open Access Journals (Sweden)

    Nacheervan M Ghaffar

    2015-06-01

    Full Text Available The transition from rod to filamentous cell morphology has been identified as a response to stressful conditions in many bacterial species and has been ascribed to confer certain survival advantages. Filamentation of Campylobacter jejuni was demonstrated to occur spontaneously on entry in to stationary phase distinguishing it from many other bacteria where a reduction in size is more common. The aim of this study was to investigate the cues that give rise to filamentation of C. jejuni and C. coli and gain insights into the process. Using minimal medium, augmentation of filamentation occurred and it was observed that this morphological change was wide spread amongst C. jejuni strains tested but was not universal in C. coli strains. Filamentation did not appear to be due to release of diffusible molecules, toxic metabolites, or be in response to oxidative stress in the medium. Separated filaments exhibited greater intracellular ATP contents (2.66 to 17.4 fg than spiral forms (0.99 to 1.7 fg and showed enhanced survival in water at 4oC and 37oC compared to spiral cells. These observations support the conclusion that the filaments are adapted to survive extra-intestinal environments. Differences in cell morphology and physiology need to be considered in the context of the design of experimental studies and the methods adopted for the isolation of campylobacters from food, clinical and environmental sources.

  3. Star forming filaments in warm dark models

    CERN Document Server

    Gao, Liang; Springel, Volker

    2014-01-01

    We performed a hydrodynamical cosmological simulation of the formation of a Milky Way-like galaxy in a warm dark matter (WDM) cosmology. Smooth and dense filaments, several co-moving mega parsec long, form generically above z 2 in this model. Atomic line cooling allows gas in the centres of these filaments to cool to the base of the cooling function, resulting in a very striking pattern of extended Lyman-limit systems (LLSs). Observations of the correlation function of LLSs might hence provide useful limits on the nature of the dark matter. We argue that the self-shielding of filaments may lead to a thermal instability resulting in star formation. We implement a sub-grid model for this, and find that filaments rather than haloes dominate star formation until z 6. Reionisation decreases the gas density in filaments, and the more usual star formation in haloes dominates below z 6, although star formation in filaments continues until z=2. Fifteen per cent of the stars of the z=0 galaxy formed in filaments. At hi...

  4. Filamentation of ultrashort laser pulses in silica glass and KDP crystal: A comparative study

    CERN Document Server

    Rolle, Jérémie; Duchateau, Guillaume; Skupin, Stefan

    2014-01-01

    Ionizing 800-nm femtosecond laser pulses propagating in silica glass and in potassium dihydrogen phosphate (KDP) crystal are investigated by means of a unidirectional pulse propagation code. Filamentation in fused silica is compared with the self-channeling of light in KDP accounting for the presence of defect states and electron-hole dynamics. In KDP, laser pulses produce intense filaments with higher clamping intensities up to 200 TW/cm$^2$ and longer plasma channels with electron densities above $10^{16}$ cm$^{-3}$. Despite these differences, the propagation dynamics in silica and KDP are almost identical at equivalent ratios of input power over the critical power for self-focusing.

  5. An important effect of filamentation instability on laser fusion physical processes

    Institute of Scientific and Technical Information of China (English)

    Zunqi; Lin; Anle; Lei; Wei; Fan; Shenlei; Zhou; Li; Wang

    2013-01-01

    The process of high power laser interaction with the large scale length corona plasma produced by the leading edge of the laser pulse has been investigated. Early experimental results are re-analyzed and conclusions drawn. In particular,studies of the close connection of unstable filamentation instability with – mainly – two-plasmon decay and – partly –stimulated Raman scattering, stimulated Brillouin scattering, and resonance absorption are carried out in this paper. The positive and negative effects of filamentation instability are also discussed.

  6. Filamentous Biopolymers on Surfaces: Atomic Force Microscopy Images Compared with Brownian Dynamics Simulation of Filament Deposition

    Science.gov (United States)

    Mücke, Norbert; Klenin, Konstantin; Kirmse, Robert; Bussiek, Malte; Herrmann, Harald; Hafner, Mathias; Langowski, Jörg

    2009-01-01

    Nanomechanical properties of filamentous biopolymers, such as the persistence length, may be determined from two-dimensional images of molecules immobilized on surfaces. For a single filament in solution, two principal adsorption scenarios are possible. Both scenarios depend primarly on the interaction strength between the filament and the support: i) For interactions in the range of the thermal energy, the filament can freely equilibrate on the surface during adsorption; ii) For interactions much stronger than the thermal energy, the filament will be captured by the surface without having equilibrated. Such a ‘trapping’ mechanism leads to more condensed filament images and hence to a smaller value for the apparent persistence length. To understand the capture mechanism in more detail we have performed Brownian dynamics simulations of relatively short filaments by taking the two extreme scenarios into account. We then compared these ‘ideal’ adsorption scenarios with observed images of immobilized vimentin intermediate filaments on different surfaces. We found a good agreement between the contours of the deposited vimentin filaments on mica (‘ideal’ trapping) and on glass (‘ideal’ equilibrated) with our simulations. Based on these data, we have developed a strategy to reliably extract the persistence length of short worm-like chain fragments or network forming filaments with unknown polymer-surface interactions. PMID:19888472

  7. Filamentous biopolymers on surfaces: atomic force microscopy images compared with Brownian dynamics simulation of filament deposition.

    Directory of Open Access Journals (Sweden)

    Norbert Mücke

    Full Text Available Nanomechanical properties of filamentous biopolymers, such as the persistence length, may be determined from two-dimensional images of molecules immobilized on surfaces. For a single filament in solution, two principal adsorption scenarios are possible. Both scenarios depend primarily on the interaction strength between the filament and the support: i For interactions in the range of the thermal energy, the filament can freely equilibrate on the surface during adsorption; ii For interactions much stronger than the thermal energy, the filament will be captured by the surface without having equilibrated. Such a 'trapping' mechanism leads to more condensed filament images and hence to a smaller value for the apparent persistence length. To understand the capture mechanism in more detail we have performed Brownian dynamics simulations of relatively short filaments by taking the two extreme scenarios into account. We then compared these 'ideal' adsorption scenarios with observed images of immobilized vimentin intermediate filaments on different surfaces. We found a good agreement between the contours of the deposited vimentin filaments on mica ('ideal' trapping and on glass ('ideal' equilibrated with our simulations. Based on these data, we have developed a strategy to reliably extract the persistence length of short worm-like chain fragments or network forming filaments with unknown polymer-surface interactions.

  8. Thermal and Chemical Evolution of Collapsing Filaments

    Energy Technology Data Exchange (ETDEWEB)

    Gray, William J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Scannapieco, Evan [Arizona State Univ., Mesa, AZ (United States). School of Earth and Space Exploration

    2013-01-15

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z ≈ 0.1Z filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10-3Z filaments, the collapse proceeds much more slowly. This is due mostly to the lower initial temperatures, which leads to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbusting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occur. We find that we achieve similar accretion rates as NGC 5253, but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  9. Thermal and Chemical Evolution of Collapsing Filaments

    Energy Technology Data Exchange (ETDEWEB)

    Gray, William J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Scannapieco, Evan [Arizona State Univ., Mesa, AZ (United States). School of Earth and Space Exploration

    2013-01-15

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z ≈ 0.1Z filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10-3Z filaments, the collapse proceeds much more slowly. This is due mostly to the lower initial temperatures, which leads to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbusting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occur. We find that we achieve similar accretion rates as NGC 5253 but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  10. Can We Determine the Filament Chirality by the Filament Footpoint Location or the Barb-bearing?

    CERN Document Server

    Hao, Q; Fang, C; Chen, P F; Cao, W

    2015-01-01

    We attempt to propose a method for automatically detecting the solar filament chirality and barb bearing. We first introduce the unweighted undirected graph concept and adopt the Dijkstra shortest-path algorithm to recognize the filament spine. Then, we use the polarity inversion line (PIL) shift method for measuring the polarities on both sides of the filament, and employ the connected components labeling method to identify the barbs and calculate the angle between each barb and the spine to determine the bearing of the barbs, i.e., left or right. We test the automatic detection method with H-alpha filtergrams from the Big Bear Solar Observatory (BBSO) H-alpha archive and magnetograms observed with the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamics Observatory (SDO). Four filaments are automatically detected and illustrated to show the results. The barbs in different parts of a filament may have opposite bearings. The filaments in the southern hemisphere (northern hemisphere) mainly have ...

  11. Tunnel ionization, population trapping, filamentation and applications

    Science.gov (United States)

    Leang Chin, See; Xu, Huailiang

    2016-11-01

    The advances in femtosecond Ti-sapphire laser technology have led to the discovery of a profusion of new physics. This review starts with a brief historical account of the experimental realization of tunnel ionization, followed by high harmonic generation and the prediction of attosecond pulses. Then, the unique phenomenon of dynamic population trapping during the ionization of atoms and molecules in intense laser fields is introduced. One of the consequences of population trapping in the highly excited states is the neutral dissociation into simple molecular fragments which fluoresce. Such fluorescence could be amplified in femtosecond laser filamentation in gases. The experimental observations of filament-induced fluorescence and lasing in the atmosphere and combustion flames are given. Excitation of molecular rotational wave packets (molecular alignment) and their relaxation and revival in a gas filament are described. Furthermore, filament-induced condensation and precipitation inside a cloud chamber is explained. Lastly, a summary and future outlook is given.

  12. Interaction and merging of vortex filaments

    Science.gov (United States)

    Liu, C. H.; Weston, R. P.; Ishii, K.; Ting, L.; Visintainer, J. A.

    1988-01-01

    The asymptotic solutions of Navier-Stokes equations for vortex filaments of finite strength with small effective vortical cores are summarized with special emphasis placed on the physical meaning and the practical limit to the applicability of the asymptotic solution. Finite-difference solutions of Navier-Stokes equations for the marging of the filament(s) are described with a focus on the development of the approximate boundary conditions for the computational domain. An efficiency study employing a model problem is used to assess the advantages of the present approximate boundary condition method over previously used techniques. Applications of the present method are presented for the motion and decay of a 3:1 elliptic vortex ring, and for the merging process of a pair of coaxial vortex rings. A numerical procedure for the problem of local merging of vortex filaments, which requires the asymptotic analysis as well as the numerical Navier-Stokes solver, is also presented.

  13. Observing the release of twist by magnetic reconnection in a solar filament eruption.

    Science.gov (United States)

    Xue, Zhike; Yan, Xiaoli; Cheng, Xin; Yang, Liheng; Su, Yingna; Kliem, Bernhard; Zhang, Jun; Liu, Zhong; Bi, Yi; Xiang, Yongyuan; Yang, Kai; Zhao, Li

    2016-06-16

    Magnetic reconnection is a fundamental process of topology change and energy release, taking place in plasmas on the Sun, in space, in astrophysical objects and in the laboratory. However, observational evidence has been relatively rare and typically only partial. Here we present evidence of fast reconnection in a solar filament eruption using high-resolution H-alpha images from the New Vacuum Solar Telescope, supplemented by extreme ultraviolet observations. The reconnection is seen to occur between a set of ambient chromospheric fibrils and the filament itself. This allows for the relaxation of magnetic tension in the filament by an untwisting motion, demonstrating a flux rope structure. The topology change and untwisting are also found through nonlinear force-free field modelling of the active region in combination with magnetohydrodynamic simulation. These results demonstrate a new role for reconnection in solar eruptions: the release of magnetic twist.

  14. Observing the release of twist by magnetic reconnection in a solar filament eruption

    Science.gov (United States)

    Xue, Zhike; Yan, Xiaoli; Cheng, Xin; Yang, Liheng; Su, Yingna; Kliem, Bernhard; Zhang, Jun; Liu, Zhong; Bi, Yi; Xiang, Yongyuan; Yang, Kai; Zhao, Li

    2016-06-01

    Magnetic reconnection is a fundamental process of topology change and energy release, taking place in plasmas on the Sun, in space, in astrophysical objects and in the laboratory. However, observational evidence has been relatively rare and typically only partial. Here we present evidence of fast reconnection in a solar filament eruption using high-resolution H-alpha images from the New Vacuum Solar Telescope, supplemented by extreme ultraviolet observations. The reconnection is seen to occur between a set of ambient chromospheric fibrils and the filament itself. This allows for the relaxation of magnetic tension in the filament by an untwisting motion, demonstrating a flux rope structure. The topology change and untwisting are also found through nonlinear force-free field modelling of the active region in combination with magnetohydrodynamic simulation. These results demonstrate a new role for reconnection in solar eruptions: the release of magnetic twist.

  15. Observing the release of twist by magnetic reconnection in a solar filament eruption

    Science.gov (United States)

    Xue, Zhike; Yan, Xiaoli; Cheng, Xin; Yang, Liheng; Su, Yingna; Kliem, Bernhard; Zhang, Jun; Liu, Zhong; Bi, Yi; Xiang, Yongyuan; Yang, Kai; Zhao, Li

    2016-01-01

    Magnetic reconnection is a fundamental process of topology change and energy release, taking place in plasmas on the Sun, in space, in astrophysical objects and in the laboratory. However, observational evidence has been relatively rare and typically only partial. Here we present evidence of fast reconnection in a solar filament eruption using high-resolution H-alpha images from the New Vacuum Solar Telescope, supplemented by extreme ultraviolet observations. The reconnection is seen to occur between a set of ambient chromospheric fibrils and the filament itself. This allows for the relaxation of magnetic tension in the filament by an untwisting motion, demonstrating a flux rope structure. The topology change and untwisting are also found through nonlinear force-free field modelling of the active region in combination with magnetohydrodynamic simulation. These results demonstrate a new role for reconnection in solar eruptions: the release of magnetic twist. PMID:27306479

  16. Particles trajectories in Weibel magnetic filaments with a flow-aligned magnetic field

    CERN Document Server

    Bret, Antoine

    2016-01-01

    For a Weibel shock to form, two plasma shells have to collide and trigger the Weibel instability. At saturation, this instability generates in the overlapping region magnetic filaments with peak field $B_f$. In the absence of an external guiding magnetic field, these filaments can block the incoming flow, initiating the shock formation, if their size is larger than the Larmor radius of the incoming particles in the peak field. Here we show that this results still holds in the presence of an external magnetic field $B_0$, provided it is not too high. Yet, for $B_0 \\gtrsim B_f/2$, the filaments become unable to stop any particle, regardless of its initially velocity.

  17. Study of filamentation instability on the divergence of ultraintense laser-driven electrons

    CERN Document Server

    Yang, X H; Xu, H; Ge, Z Y; Shao, F Q; Borghesi, M; Ma, Y Y

    2016-01-01

    Generation of relativistic electron (RE) beams during ultraintense laser pulse interaction with plasma targets is studied by collisional particle-in-cell (PIC) simulations. Strong magnetic field with transverse scale length of several local plasma skin depths, associated with RE currents propagation in the target, is generated by filamentation instability (FI) in collisional plasmas, inducing a great enhancement of the divergence of REs compared to that of collisionless cases. Such effect is increased with laser intensity and target charge state, suggesting that the RE divergence might be improved by using low-Z materials under appropriate laser intensities in future fast ignition experiments and in other applications of laser-driven electron beams.

  18. Organizing Filament of Small Amplitude Scroll Waves

    Institute of Scientific and Technical Information of China (English)

    ZHOU TianShou; ZHANG SuoChun

    2001-01-01

    We theoretically analyze the organizing filament of small amplitude scroll waves in general excitable media by perturbation method and explicitly give the expressions of coefficients in Keener theory. In particular for the excitable media with equal diffusion, we obtain a close system for the motion of the filament. With an example of the Oregonator model, our results are in good agreement with those simulated by Winfree.``

  19. Morgellons disease: a filamentous borrelial dermatitis

    OpenAIRE

    Middelveen MJ; Stricker RB

    2016-01-01

    Marianne J Middelveen, Raphael B Stricker International Lyme and Associated Diseases Society, Bethesda, MD, USA Abstract: Morgellons disease (MD) is a dermopathy characterized by multicolored filaments that lie under, are embedded in, or project from skin. Although MD was initially considered to be a delusional disorder, recent studies have demonstrated that the dermopathy is associated with tickborne infection, that the filaments are composed of keratin and collagen, and that they resu...

  20. Can we determine the filament chirality by the filament footpoint location or the barb-bearing?

    Science.gov (United States)

    Hao, Qi; Guo, Yang; Fang, Cheng; Chen, Peng-Fei; Cao, Wen-Da

    2016-01-01

    We attempt to propose a method for automatically detecting the solar filament chirality and barb bearing. We first introduce the concept of an unweighted undirected graph and adopt the Dijkstra shortest path algorithm to recognize the filament spine. Then, we use the polarity inversion line (PIL) shift method for measuring the polarities on both sides of the filament, and employ the connected components labeling method to identify the barbs and calculate the angle between each barb and the spine to determine the bearing of the barbs, i.e., left or right. We test the automatic detection method with Hα filtergrams from the Big Bear Solar Observatory (BBSO) Hα archive and magnetograms observed with the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamics Observatory (SDO). Four filaments are automatically detected and illustrated to show the results. The barbs in different parts of a filament may have opposite bearings. The filaments in the southern hemisphere (northern hemisphere) mainly have left-bearing (right-bearing) barbs and positive (negative) magnetic helicity, respectively. The tested results demonstrate that our method is efficient and effective in detecting the bearing of filament barbs. It is demonstrated that the conventionally believed one-to-one correspondence between filament chirality and barb bearing is not valid. The correct detection of the filament axis chirality should be done by combining both imaging morphology and magnetic field observations.

  1. On the nature of star-forming filaments: II. Sub-filaments and velocities

    CERN Document Server

    Smith, Rowan J; Klessen, Ralf S; Fuller, Gary A

    2015-01-01

    We show that hydrodynamic turbulent cloud simulations naturally produce large filaments made up of a network of smaller and coherent sub-filaments. Such simulations resemble observations of filaments and fibres in nearby molecular clouds. The sub-filaments are dynamical features formed at the stagnation points of the turbulent velocity field where shocks dissipate the turbulent energy. They are a ubiquitous feature of the simulated clouds, which appear from the beginning of the simulation and are not formed by gradual fragmentation of larger filaments. Most of the sub-filaments are gravitationally sub-critical and do not fragment into cores, however, there is also a significant fraction of supercritical sub-filaments which break up into star-forming cores. The sub-filaments are coherent along their length, and the residual velocities along their spine show that they are subsonically contracting without any ordered rotation on scales of ~0.1 pc. Accretion flows along the sub-filaments can feed material into st...

  2. Actin filament attachments for sustained motility in vitro are maintained by filament bundling.

    Directory of Open Access Journals (Sweden)

    Xiaohua Hu

    Full Text Available We reconstructed cellular motility in vitro from individual proteins to investigate how actin filaments are organized at the leading edge. Using total internal reflection fluorescence microscopy of actin filaments, we tested how profilin, Arp2/3, and capping protein (CP function together to propel thin glass nanofibers or beads coated with N-WASP WCA domains. Thin nanofibers produced wide comet tails that showed more structural variation in actin filament organization than did bead substrates. During sustained motility, physiological concentrations of Mg(2+ generated actin filament bundles that processively attached to the nanofiber. Reduction of total Mg(2+ abolished particle motility and actin attachment to the particle surface without affecting actin polymerization, Arp2/3 nucleation, or filament capping. Analysis of similar motility of microspheres showed that loss of filament bundling did not affect actin shell formation or symmetry breaking but eliminated sustained attachments between the comet tail and the particle surface. Addition of Mg(2+, Lys-Lys(2+, or fascin restored both comet tail attachment and sustained particle motility in low Mg(2+ buffers. TIRF microscopic analysis of filaments captured by WCA-coated beads in the absence of Arp2/3, profilin, and CP showed that filament bundling by polycation or fascin addition increased barbed end capture by WCA domains. We propose a model in which CP directs barbed ends toward the leading edge and polycation-induced filament bundling sustains processive barbed end attachment to the leading edge.

  3. Filaments in the Lupus molecular clouds

    CERN Document Server

    Benedettini, M; Pezzuto, S; Elia, D; André, P; Könyves, V; Schneider, N; Tremblin, P; Arzoumanian, D; di Giorgio, A M; Di Francesco, J; Hill, T; Molinari, S; Motte, F; Nguyen-Luong, Q; Palmeirim, P; Rivera-Ingraham, A; Roy, A; Rygl, K L J; Spinoglio, L; Ward-Thompson, D; White, G J

    2015-01-01

    We have studied the filaments extracted from the column density maps of the nearby Lupus 1, 3, and 4 molecular clouds, derived from photometric maps observed with the Herschel satellite. Filaments in the Lupus clouds have quite low column densities, with a median value of $\\sim$1.5$\\times$10$^{21}$ cm$^{-2}$ and most have masses per unit length lower than the maximum critical value for radial gravitational collapse. Indeed, no evidence of filament contraction has been seen in the gas kinematics. We find that some filaments, that on average are thermally subcritical, contain dense cores that may eventually form stars. This is an indication that in the low column density regime, the critical condition for the formation of stars may be reached only locally and this condition is not a global property of the filament. Finally, in Lupus we find multiple observational evidences of the key role that the magnetic field plays in forming filaments, and determining their confinement and dynamical evolution.

  4. Filaments in Simulations of Molecular Cloud Formation

    CERN Document Server

    Gomez, Gilberto C

    2013-01-01

    We report on the filaments that develop self-consistently in a new numerical simulation of cloud formation by colliding flows. As in previous studies, the forming cloud begins to undergo gravitational collapse because it rapidly acquires a mass much larger than the average Jeans mass. Thus, the collapse is hierarchical in nature, proceeding along its shortest dimension first. This naturally produces filaments in cloud, and clumps within the filaments. The filaments are not in equilibrium at any time, but instead are long-lived flow features, through which the gas flows from the cloud to the clumps. The filaments are long-lived because they accrete from their environment while simultaneously accreting onto the clumps within them; they are essentially the locus where the flow changes from accreting in two dimensions to accreting in one dimension. Moreover, the clumps also exhibit a hierarchical nature: the gas in a filament flows onto a main, central clump, but other, smaller-scale clumps form along the infalli...

  5. Filaments in the Lupus molecular clouds

    Science.gov (United States)

    Benedettini, M.; Schisano, E.; Pezzuto, S.; Elia, D.; André, P.; Könyves, V.; Schneider, N.; Tremblin, P.; Arzoumanian, D.; di Giorgio, A. M.; Di Francesco, J.; Hill, T.; Molinari, S.; Motte, F.; Nguyen-Luong, Q.; Palmeirim, P.; Rivera-Ingraham, A.; Roy, A.; Rygl, K. L. J.; Spinoglio, L.; Ward-Thompson, D.; White, G. J.

    2015-10-01

    We have studied the filaments extracted from the column density maps of the nearby Lupus 1, 3, and 4 molecular clouds, derived from photometric maps observed with the Herschel satellite. Filaments in the Lupus clouds have quite low column densities, with a median value of ˜1.5 × 1021 cm-2 and most have masses per unit length lower than the maximum critical value for radial gravitational collapse. Indeed, no evidence of filament contraction has been seen in the gas kinematics. We find that some filaments, that on average are thermally subcritical, contain dense cores that may eventually form stars. This is an indication that in the low column density regime, the critical condition for the formation of stars may be reached only locally and this condition is not a global property of the filament. Finally, in Lupus we find multiple observational evidences of the key role that the magnetic field plays in forming filaments, and determining their confinement and dynamical evolution.

  6. Otomycosis due to filamentous fungi.

    Science.gov (United States)

    García-Agudo, Lidia; Aznar-Marín, Pilar; Galán-Sánchez, Fátima; García-Martos, Pedro; Marín-Casanova, Pilar; Rodríguez-Iglesias, Manuel

    2011-10-01

    Otomycosis is common throughout the world but barely studied in Spain. Our objective was to determine the microbiological and epidemiological characteristics of this pathology in Cadiz (Spain) between 2005 and 2010. Samples from patients with suspicion of otomycosis underwent a direct microscopic examination and culture on different media for fungi and bacteria. Mycological cultures were incubated at 30°C for at least seven days. Identification of fungi was based on colonial morphology and microscopic examination of fungal structure. From a total of 2,633 samples, microbial growth was present in 1,375 (52.2%) and fungal isolation in 390 (28.4%). We identified 228 yeasts and 184 filamentous fungi (13.4% of positive cultures and 47.2% of otomycosis), associated with yeasts in 22 cases (5.6%). The most frequent species were Aspergillus flavus (42.4%), A. niger (35.9%), A. fumigatus (12.5%), A. candidus (7.1%), A. terreus (1.6%), and Paecilomyces variotii (0.5%). Infection was predominant in men (54.9%) and patients beyond 55 years old (46.8%). The most common clinical symptoms were itching (98.9%), otalgia (59.3%), and hypoacusis (56.0%). Fall season reported the lowest number of cases (20.1%). Incidence of otomycosis and fungi producing otomycosis vary within the distinct geographical areas. In Cadiz, this infection is endemic due to warm temperatures, high humidity, sea bathing, and wind, which contributes to disseminate the conidia. Despite Aspergillus niger has been reported as the main causative agent, A. flavus is predominant in Cadiz. Although infection is usually detected in warm months, we observed a homogeneous occurrence of otomycosis in almost all the seasons.

  7. 3D evolution of a filament disappearance event observed by STEREO

    CERN Document Server

    Gosain, S; Venkatakrishnan, P; Chandra, R; Artzner, G

    2009-01-01

    A filament disappearance event was observed on 22 May 2008 during our recent campaign JOP 178. The filament, situated in the southern hemisphere, showed sinistral chirality consistent with the hemispheric rule. The event was well observed by several observatories in particular by THEMIS. One day before the disappearance, H$\\alpha$ observations showed up and down flows in adjacent locations along the filament, which suggest plasma motions along twisted flux rope. THEMIS and GONG observations show shearing photospheric motions leading to magnetic flux canceling around barbs. STEREO A, B spacecraft with separation angle 52.4 degrees, showed quite different views of this untwisting flux rope in He II 304 \\AA\\ images. Here, we reconstruct the 3D geometry of the filament during its eruption phase using STEREO EUV He II 304 \\AA\\ images and find that the filament was highly inclined to the solar normal. The He II 304 \\AA\\ movies show individual threads, which oscillate and rise to an altitude of about 120 Mm with app...

  8. Kink deformation of Weibel-mediated current filaments and onset of shock formation

    Science.gov (United States)

    Ruyer, Charles; Alves, E. Paulo; Fiuza, Frederico

    2016-10-01

    The Weibel instability is believed to mediate the interaction of high Mach number collisionless shocks in weakly magnetized astrophysical environments. Although the generation of current filaments and strong magnetic fields by this instability has now been demonstrated experimentally, it is still not clear what is the long-term evolution of these filaments and how they lead to shock formation. We have studied the stability of Weibel-mediated current filaments using 2D/3D Particle-In-Cell simulations and analytical theory. We show that these are prone to kink-like instabilities that we characterize in both the linear and non-linear stage for a single filament, leading to an efficient ion slowing down and isotropization. We then demonstrate that our results are relevant to the self-consistent counter-streaming plasma interaction. Our 3D simulations show that the kink deformation dominates the late-stage of the interaction, when the current filaments break and most of the flow dissipation occurs, leading to the onset of magnetic turbulence and shock formation. We will discuss the important implications of these results for the shock structure and its ability to accelerate particles. This work was supported by the DOE Office of Science, Fusion Energy Science (FWP 100182).

  9. Characterization of 3D filament dynamics in a MAST SOL flux tube geometry

    Science.gov (United States)

    Walkden, N. R.; Dudson, B. D.; Fishpool, G.

    2013-10-01

    Non-linear simulations of filament propagation in a realistic MAST SOL flux tube geometry using the BOUT++ fluid modelling framework show an isolation of the dynamics of the filament in the divertor region from the midplane region due to three features of the magnetic geometry; the variation of magnetic curvature along the field line, the expansion of the flux tube and strong magnetic shear. Of the three effects, the latter two lead to a midplane ballooning feature of the filament, whilst the former leads to a ballooning around the X-points. In simulations containing all three effects the filament is observed to balloon at the midplane, suggesting that the role of curvature variation is sub-dominant to the flux expansion and magnetic shear. The magnitudes of these effects are all strongest near the X-point which leads to the formation of parallel density gradients. The filaments simulated, which represent filaments in MAST, are identified as resistive ballooning, meaning that their motion is inertially limited, not sheath limited. Parallel density gradients can drive the filament towards a Boltzmann response when the collisionalityof the plasma is low. The results here show that the formation of parallel density gradients is a natural and inevitable consequence of a realistic magnetic geometry and therefore the transition to the Boltzmann response is a consequence of the use of realistic magnetic geometry and does not require initializing specifically varying background profiles as in slab simulations. The filaments studied here are stable to the linear resistive drift-wave instability but are subject to the non-linear effects associated with the Boltzmann response, particularly Boltzmann spinning. The Boltzmann response causes the filament to spin on an axis. In later stages of its evolution a non-linear turbulent state develops where the vorticity evolves into a turbulent eddy field on the same length scale as the parallel current. The transition from interchange

  10. Potential fields of merging and splitting filaments in air

    Institute of Scientific and Technical Information of China (English)

    Ma Yuan-Yuan; Lu Xin; Xi Ting-Ting; Hao Zuo-Qiang; Gong Qi-Huang; Zhang Jie

    2007-01-01

    Two interacting light filaments with different initial phases propagating in air are investigated numerically by using a ray tracing method. The evolution of the rays of a filament is governed by a potential field. During propagation, the two potential wells of the two filaments can merge into one or repel each other, depending on the initial phase difference between the two filaments. The study provides a simple description of the interacting filaments.

  11. Electromagnetic (EM) Wave Attachment to Laser Plasma Filaments

    Science.gov (United States)

    2009-05-01

    having a time harmonic dependence of e’(A*-«t)_ [This derivation follows those found in Jackson (ref. 24) or Pozar (ref. 17) and many other E&M...approach used by Pozar in his microwave engineering text (ref. 17) will be used. Begin with the power equation for a TEM transmission line p = p0e~ az P...111; 2001. 17. Pozar , David M.; Microwave Engineering, Second Edition, Wiley. 18. Lewellen, J.W.; Noonan, J.; Phys. Rev. Special Topics

  12. ANTI-PARALLEL EUV FLOWS OBSERVED ALONG ACTIVE REGION FILAMENT THREADS WITH HI-C

    Energy Technology Data Exchange (ETDEWEB)

    Alexander, Caroline E.; Walsh, Robert W.; Régnier, Stéphane [Jeremiah Horrocks Institute, University of Central Lancashire, Preston PR1 2HE (United Kingdom); Cirtain, Jonathan; Winebarger, Amy R. [NASA Marshall Space Flight Center, VP 62, Huntsville, AL 35812 (United States); Golub, Leon; Korreck, Kelly; Weber, Mark [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Kobayashi, Ken [Center for Space Plasma and Aeronomic Research, The University of Alabama in Huntsville, 320 Sparkman Drive, Huntsville, AL 35805 (United States); Platt, Simon; Mitchell, Nick [School of Computing, Engineering and Physical Sciences, University of Central Lancashire, Preston PR1 2HE (United Kingdom); DePontieu, Bart; Title, Alan [Lockheed Martin Solar and Astrophysics Lab, 3251 Hanover Street, Org. ADBS, Bldg. 252, Palo Alto, CA (United States); DeForest, Craig [Southwest Research Institute, 1050 Walnut Street, Suite 300, Boulder, CO 80302 (United States); Kuzin, Sergey [P.N. Lebedev Physical institute of the Russian Academy of Sciences, Leninskii prospekt, 53, 119991 Moscow (Russian Federation)

    2013-09-20

    Plasma flows within prominences/filaments have been observed for many years and hold valuable clues concerning the mass and energy balance within these structures. Previous observations of these flows primarily come from Hα and cool extreme-ultraviolet (EUV) lines (e.g., 304 Å) where estimates of the size of the prominence threads has been limited by the resolution of the available instrumentation. Evidence of 'counter-steaming' flows has previously been inferred from these cool plasma observations, but now, for the first time, these flows have been directly imaged along fundamental filament threads within the million degree corona (at 193 Å). In this work, we present observations of an AR filament observed with the High-resolution Coronal Imager (Hi-C) that exhibits anti-parallel flows along adjacent filament threads. Complementary data from the Solar Dynamics Observatory (SDO)/Atmospheric Imaging Assembly (AIA) and Helioseismic and Magnetic Imager are presented. The ultra-high spatial and temporal resolution of Hi-C allow the anti-parallel flow velocities to be measured (70-80 km s{sup –1}) and gives an indication of the resolvable thickness of the individual strands (0.''8 ± 0.''1). The temperature of the plasma flows was estimated to be log T (K) = 5.45 ± 0.10 using Emission Measure loci analysis. We find that SDO/AIA cannot clearly observe these anti-parallel flows or measure their velocity or thread width due to its larger pixel size. We suggest that anti-parallel/counter-streaming flows are likely commonplace within all filaments and are currently not observed in EUV due to current instrument spatial resolution.

  13. Anti-parallel EUV Flows Observed along Active Region Filament Threads with Hi-C

    Science.gov (United States)

    Alexander, Caroline E.; Walsh, Robert W.; Régnier, Stéphane; Cirtain, Jonathan; Winebarger, Amy R.; Golub, Leon; Kobayashi, Ken; Platt, Simon; Mitchell, Nick; Korreck, Kelly; DePontieu, Bart; DeForest, Craig; Weber, Mark; Title, Alan; Kuzin, Sergey

    2013-09-01

    Plasma flows within prominences/filaments have been observed for many years and hold valuable clues concerning the mass and energy balance within these structures. Previous observations of these flows primarily come from Hα and cool extreme-ultraviolet (EUV) lines (e.g., 304 Å) where estimates of the size of the prominence threads has been limited by the resolution of the available instrumentation. Evidence of "counter-steaming" flows has previously been inferred from these cool plasma observations, but now, for the first time, these flows have been directly imaged along fundamental filament threads within the million degree corona (at 193 Å). In this work, we present observations of an AR filament observed with the High-resolution Coronal Imager (Hi-C) that exhibits anti-parallel flows along adjacent filament threads. Complementary data from the Solar Dynamics Observatory (SDO)/Atmospheric Imaging Assembly (AIA) and Helioseismic and Magnetic Imager are presented. The ultra-high spatial and temporal resolution of Hi-C allow the anti-parallel flow velocities to be measured (70-80 km s-1) and gives an indication of the resolvable thickness of the individual strands (0.''8 ± 0.''1). The temperature of the plasma flows was estimated to be log T (K) = 5.45 ± 0.10 using Emission Measure loci analysis. We find that SDO/AIA cannot clearly observe these anti-parallel flows or measure their velocity or thread width due to its larger pixel size. We suggest that anti-parallel/counter-streaming flows are likely commonplace within all filaments and are currently not observed in EUV due to current instrument spatial resolution.

  14. PDGF induces reorganization of vimentin filaments.

    Science.gov (United States)

    Valgeirsdóttir, S; Claesson-Welsh, L; Bongcam-Rudloff, E; Hellman, U; Westermark, B; Heldin, C H

    1998-07-30

    In this study we demonstrate that stimulation with platelet-derived growth factor (PDGF) leads to a marked reorganization of the vimentin filaments in porcine aortic endothelial (PAE) cells ectopically expressing the PDGF beta-receptor. Within 20 minutes after stimulation, the well-spread fine fibrillar vimentin was reorganized as the filaments aggregated into a dense coil around the nucleus. The solubility of vimentin upon Nonidet-P40-extraction of cells decreased considerably after PDGF stimulation, indicating that PDGF caused a redistribution of vimentin to a less soluble compartment. In addition, an increased tyrosine phosphorylation of vimentin was observed. The redistribution of vimentin was not a direct consequence of its tyrosine phosphorylation, since treatment of cells with an inhibitor for the cytoplasmic tyrosine kinase Src, attenuated phosphorylation but not redistribution of vimentin. These changes in the distribution of vimentin occurred in conjunction with reorganization of actin filaments. In PAE cells expressing a Y740/751F mutant receptor that is unable to bind and activate phosphatidylinositol 3'-kinase (PI3-kinase), the distribution of vimentin was virtually unaffected by PDGF stimulation. Thus, PI3-kinase is important for vimentin reorganization, in addition to its previously demonstrated role in actin reorganization. The small GTPase Rac has previously been shown to be involved downstream of PI3-kinase in the reorganization of actin filaments. In PAE cells overexpressing dominant negative Rac1 (N17Rac1), no change in the fine fibrillar vimentin network was seen after PDGF-BB stimulation, whereas in PAE cells overexpressing constitutively active Rac1 (V12Rac1), there was a dramatic change in vimentin filament organization independent of PDGF stimulation. These data indicate that PDGF causes a reorganization of microfilaments as well as intermediate filaments in its target cells and suggest an important role for Rac downstream of PI3-kinase in

  15. Three-dimensional gyrokinetic simulation of the relaxation of a magnetized temperature filament

    Science.gov (United States)

    Sydora, R. D.; Morales, G. J.; Maggs, J. E.; Van Compernolle, B.

    2015-10-01

    An electromagnetic, 3D gyrokinetic particle code is used to study the relaxation of a magnetized electron temperature filament embedded in a large, uniform plasma of lower temperature. The study provides insight into the role played by unstable drift-Alfvén waves observed in a basic electron heat transport experiment [D. C. Pace et al., Phys. Plasmas 15, 122304 (2008)] in which anomalous cross-field transport has been documented. The simulation exhibits the early growth of temperature-gradient-driven, drift-Alfvén fluctuations that closely match the eigenmodes predicted by linear theory. At the onset of saturation, the unstable fluctuations display a spiral spatial pattern, similar to that observed in the laboratory, which causes the rearrangement of the temperature profile. After saturation of the linear instability, the system exhibits a markedly different behavior depending on the inclusion in the computation of modes without variation along the magnetic field, i.e., kz = 0. In their absence, the initial filament evolves into a broadened temperature profile, self-consistent with undamped, finite amplitude drift-Alfvén waves. But the inclusion of kz = 0 modes causes the destruction of the filament and damping of the drift-Alfvén modes leading to a final state consisting of undamped convective cells and multiple, smaller-scale filaments.

  16. Formation of a rotating jet during the filament eruption on 2013 April 10-11

    Science.gov (United States)

    Filippov, B.; Srivastava, A. K.; Dwivedi, B. N.; Masson, S.; Aulanier, G.; Joshi, N. C.; Uddin, W.

    2015-07-01

    We analyse multiwavelength and multiviewpoint observations of a helically twisted plasma jet formed during a confined filament eruption on 2013 April 10-11. Given a rather large-scale event with its high spatial and temporal resolution observations, it allows us to clearly understand some new physical details about the formation and triggering mechanism of twisting jet. We identify a pre-existing flux rope associated with a sinistral filament, which was observed several days before the event. The confined eruption of the filament within a null-point topology, also known as an Eiffel tower (or inverted-Y) magnetic field configuration results in the formation of a twisted jet after the magnetic reconnection near a null point. The sign of helicity in the jet is found to be the same as that of the sign of helicity in the filament. Untwisting motion of the reconnected magnetic field lines gives rise to the accelerating plasma along the jet axis. The event clearly shows the twist injection from the pre-eruptive magnetic field to the jet.

  17. Formation of a rotating jet during the filament eruption on 10-11 April 2013

    CERN Document Server

    Filippov, B; Dwivedi, B N; Masson, S; Aulanier, G; Joshi, N C; Uddin, W

    2015-01-01

    We analyze multi-wavelength and multi-viewpoint observations of a helically twisted plasma jet formed during a confined filament eruption on 10-11 April 2013. Given a rather large scale event with its high spatial and temporal resolution observations, it allows us to clearly understand some new physical details about the formation and triggering mechanism of twisting jet. We identify a pre-existing flux rope associated with a sinistral filament, which was observed several days before the event. The confined eruption of the filament within a null point topology, also known as an Eiffel tower (or inverted-Y) magnetic field configuration results in the formation of a twisted jet after the magnetic reconnection near a null point. The sign of helicity in the jet is found to be the same as that of the sign of helicity in the filament. Untwisting motion of the reconnected magnetic field lines gives rise to the accelerating plasma along the jet axis. The event clearly shows the twist injection from the pre-eruptive m...

  18. Anti-parallel EUV flows observed along active region filament threads with Hi-C

    CERN Document Server

    Alexander, Caroline E; Regnier, Stephane; Cirtain, Jonathan; Winebarger, Amy R; Golub, Leon; Kobayashi, Ken; Platt, Simon; Mitchell, Nick; Korreck, Kelly; DePontieu, Bart; DeForest, Craig; Weber, Mark; Title, Alan; Kuzin, Sergey

    2013-01-01

    Plasma flows within prominences/filaments have been observed for many years and hold valuable clues concerning the mass and energy balance within these structures. Previous observations of these flows primarily come from H-alpha and cool EUV lines (e.g., 304A) where estimates of the size of the prominence threads has been limited by the resolution of the available instrumentation. Evidence of `counter-steaming' flows has previously been inferred from these cool plasma observations but now, for the first time, these flows have been directly imaged along fundamental filament threads within the million degree corona (at 193A). In this work we present observations of an active region filament observed with Hi-C that exhibits anti-parallel flows along adjacent filament threads. Complementary data from SDO/AIA and HMI are presented. The ultra-high spatial and temporal resolution of Hi-C allow the anti-parallel flow velocities to be measured (70-80 km/s) and gives an indication of the resolvable thickness of the ind...

  19. Barrier role of actin filaments in regulated mucin secretion from airway goblet cells.

    Science.gov (United States)

    Ehre, Camille; Rossi, Andrea H; Abdullah, Lubna H; De Pestel, Kathleen; Hill, Sandra; Olsen, John C; Davis, C William

    2005-01-01

    Airway goblet cells secrete mucin onto mucosal surfaces under the regulation of an apical, phospholipase C/G(q)-coupled P2Y(2) receptor. We tested whether cortical actin filaments negatively regulate exocytosis in goblet cells by forming a barrier between secretory granules and plasma membrane docking sites as postulated for other secretory cells. Immunostaining of human lung tissues and SPOC1 cells (an epithelial, mucin-secreting cell line) revealed an apical distribution of beta- and gamma-actin in ciliated and goblet cells. In goblet cells, actin appeared as a prominent subplasmalemmal sheet lying between granules and the apical membrane, and it disappeared from SPOC1 cells activated by purinergic agonist. Disruption of actin filaments with latrunculin A stimulated SPOC1 cell mucin secretion under basal and agonist-activated conditions, whereas stabilization with jasplakinolide or overexpression of beta- or gamma-actin conjugated to yellow fluorescent protein (YFP) inhibited secretion. Myristoylated alanine-rich C kinase substrate, a PKC-activated actin-plasma membrane tethering protein, was phosphorylated after agonist stimulation, suggesting a translocation to the cytosol. Scinderin (or adseverin), a Ca(2+)-activated actin filament severing and capping protein was cloned from human airway and SPOC1 cells, and synthetic peptides corresponding to its actin-binding domains inhibited mucin secretion. We conclude that actin filaments negatively regulate mucin secretion basally in airway goblet cells and are dynamically remodeled in agonist-stimulated cells to promote exocytosis.

  20. Femtosecond filament initiated, microwave heated cavity-free nitrogen laser in air

    Science.gov (United States)

    Kartashov, Daniil; Shneider, Mikhail N.

    2017-03-01

    We present the results of numerical modeling of the igniter-heater concept for initiation of standoff, cavity free lasing action in the atmosphere when a femtosecond laser filament is used for plasma generation (igniter) and a microwave heater provides electron-collision pumping of electronic states in molecular nitrogen. By solving numerically the kinetic equation for the energy distribution function of electrons, generated in a femtosecond laser filament and heated by a microwave beam, we identify the conditions enabling single-pass, standoff UV-laser from molecular nitrogen in the atmosphere. The plasma density, the minimum amplitude of the microwave field, and the small-signal gain, necessary to achieve the lasing, are determined. We demonstrate that lasing build up time can be minimized and efficiency improved by using elliptically polarized laser pulses for filamentation. It is shown that realization of the filament-igniter, microwave-heater concept of the sky laser at low altitudes would require a microwave source of hundreds of kilowatt-megawatt power. The required microwave power can be reduced by several orders of magnitude when the igniter-heater scheme is used at the 10-30 km range of altitudes.

  1. Filament Activation in Response to Magnetic Flux Emergence and Cancellation in Filament Channels

    CERN Document Server

    Li, Ting; Ji, Haisheng

    2015-01-01

    We make a comparative analysis for two filaments that showed quite different activation in response to the flux emergence within the filament channels. The observations from the Solar Dynamics Observatory (SDO) and Global Oscillation Network Group (GONG) are carried out to analyze the two filaments on 2013 August 17-20 and September 29. The first event showed that the main body of the filament was separated into two parts when an active region (AR) emerged with a maximum magnetic flux of about 6.4*10^21 Mx underlying the filament. The close neighborhood and common direction of the bright threads in the filament and the open AR fan loops suggest similar magnetic connectivity of these two flux systems. The equilibrium of the filament was not destroyed within 3 days after the start of the emergence of the AR. To our knowledge, similar observations have never been reported before. In the second event, the emerging flux occurred nearby a barb of the filament with a maximum magnetic flux of 4.2*10^20 Mx, about one ...

  2. The Breakout Model for Coronal Jets with Filaments

    Science.gov (United States)

    Wyper, Peter; DeVore, C. Richard; Antiochos, Spiro K.

    2016-05-01

    Coronal jets are impulsive, collimated plasma outflows originating low in the solar corona. Many of these events exhibit broad, curtain-like morphologies with helical structure and motions. Recently, Sterling et al. (2015) [doi:10.1038/nature14556] reported that such jets are associated with the eruption of small filaments and, therefore, are miniature versions of corona mass ejections (CMEs). This account differs from the traditional picture of jets, in that internal flare reconnection, rather than interchange reconnection with the external ambient magnetic field, creates the bright loops observed at the jet base. We present 3D simulations, performed with the Adaptively Refined MHD Solver (ARMS), which demonstrate how the magnetic breakout mechanism generates mini-CME-type jets in a compact bipolar region energized by simple footpoint motions. Our numerical model captures the formation of the strongly sheared pre-jet filament structure, the post-jet flare-like loops and ribbons, and the curtain-like untwisting dynamics observed higher in the corona. We will discuss the significance of our new results for understanding solar EUV and X-ray jets and CMEs in general. NASA supported this research by awards to the NASA Postdoctoral Program (P.F.W.) and the LWS TR&T and H-SR programs (C.R.D. & S.K.A.).

  3. Arcade Implosion Caused by a Filament Eruption in a Flare

    CERN Document Server

    Wang, Juntao; Fletcher, L; Thalmann, J K; Hudson, H S; Hannah, I G

    2016-01-01

    Coronal implosions - the convergence motion of plasmas and entrained magnetic field in the corona due to a reduction in magnetic pressure - can help to locate and track sites of magnetic energy release or redistribution during solar flares and eruptions. We report here on the analysis of a well-observed implosion in the form of an arcade contraction associated with a filament eruption, during the C3.5 flare SOL2013-06-19T07:29. A sequence of events including magnetic flux-rope instability and distortion, followed by filament eruption and arcade implosion, lead us to conclude that the implosion arises from the transfer of magnetic energy from beneath the arcade as part of the global magnetic instability, rather than due to local magnetic energy dissipation in the flare. The observed net contraction of the imploding loops, which is found also in nonlinear force-free field extrapolations, reflects a permanent reduction of magnetic energy underneath the arcade. This event shows that, in addition to resulting in e...

  4. Evidence for an interstellar dust filament in the outer heliosheath

    CERN Document Server

    Frisch, P C; Berdyugin, A; Funsten, H O; Magalhaes, A M; McComas, D J; Piirola, V; Schwadron, N A; Seriacopi, D B; Slavin, J D; Wiktorowicz, S J

    2015-01-01

    A recently discovered filament of polarized starlight that traces a coherent magnetic field is shown to have several properties that are consistent with an origin in the outer heliosheath of the heliosphere: (1) The magnetic field that provides the best fit to the polarization position angles is directed within 6.7+-11 degrees of the observed upwind direction of the flow of interstellar neutral helium gas through the heliosphere. (2) The magnetic field is ordered; the component of the variation of the polarization position angles that can be attributed to magnetic turbulence is small. (3) The axis of the elongated filament can be approximated by a line that defines an angle of 80+/-14 degrees with the plane that is formed by the interstellar magnetic field vector and the vector of the inflowing neutral gas (the "BV" plane). We propose that this polarization feature arises from aligned interstellar dust grains in the outer heliosheath where the interstellar plasma and magnetic field are deflected around the he...

  5. Drops moving along and across a filament

    Science.gov (United States)

    Sahu, Rakesh P.; Sinha-Ray, Suman; Yarin, Alexander; Pourdeyhimi, Behnam

    2013-11-01

    The present work is devoted to the experimental study of oil drop motion both along and across a filament due to the air jet blowing. In case of drop moving along the filament, phenomena such as drop stick-slip motion, shape oscillations, shedding of a tail along the filament, the tail capillary instability and drop recoil motion were observed which were rationalized in the framework of simplified models. Experiments with cross-flow of the surrounding gas relative to the filament with an oil drop on it were conducted, with air velocity in the range of 7.23 to 22.7 m s-1. The Weber number varied from 2 to 40 and the Ohnesorge number varied from 0.07 to 0.8. The lower and upper critical Weber numbers were introduced to distinguish between the beginning of the drop blowing off the filament and the onset of the bag-stamen breakup. The range of the Weber number between these two critical values is filled with three types of vibrational breakup: V1 (a balloon-like drop being blown off), V2 (a drop on a single stamen being blown off), and V3 (a drop on a double stamen being blown off). The Weber number/Ohnesorge number plane was delineated into domains of different breakup regimes. The work is supported by the Nonwovens Cooperative Research Center (NCRC).

  6. The hydrodynamic stability of gaseous cosmic filaments

    CERN Document Server

    Birnboim, Yuval; Zinger, Elad

    2016-01-01

    Virial shocks at edges of cosmic-web structures are a clear prediction of standard structure formation theories. We derive a criterion for the stability of the post-shock gas and of the virial shock itself in spherical, filamentary and planar infall geometries. When gas cooling is important, we find that shocks become unstable, and gas flows uninterrupted towards the center of the respective halo, filament or sheet. For filaments, we impose this criterion on self-similar infall solutions. We find that instability is expected for filament masses between $10^{11}-10^{13}M_\\odot Mpc^{-1}.$ Using a simplified toy model, we then show that these filaments will likely feed halos with $10^{10}M_{\\odot}\\lesssim M_{halo}\\lesssim 10^{13}M_{\\odot}$ at redshift $z=3$, as well as $10^{12}M_{\\odot}\\lesssim M_{halo}\\lesssim 10^{15}M_{\\odot}$ at $z=0$. The instability will affect the survivability of the filaments as they penetrate gaseous halos in a non-trivial way. Additionally, smaller halos accreting onto non-stable filam...

  7. Free-Space Nonlinear Beam Combining Towards Filamentation

    CERN Document Server

    Rostami, Shermineh; Kepler, Daniel; Baudelet, Matthieu; Litchinitser, Natalia M; Richardson, Martin

    2016-01-01

    Multi-filamentation opens new degrees of freedom for manipulating electromagnetic waves in air. However, without control, multiple filament interactions, including attraction, repulsion or fusion often result in formation of complex disordered filament distributions. Moreover, high power beams conventionally used in multi-filament formation experiments often cause significant surface damage. The growing number of applications for laser filaments requires fine control of their formation and propagation. We demonstrate, experimentally and theoretically, that the attraction and fusion of ultrashort beams with initial powers below the critical value enable the eventual formation of a filament downstream. Filament formation is delayed to a predetermined distance in space, avoiding optical damage to external beam optics while still enabling robust filaments with controllable properties as if formed from a single high power beam. This paradigm introduces new opportunities for filament engineering eliminating the nee...

  8. Unwinding motion of a twisted active-region filament

    CERN Document Server

    Yan, X L; Liu, J H; Kong, D F; Xu, C L

    2014-01-01

    To better understand the structures of active-region filaments and the eruption process, we study an active-region filament eruption in active region NOAA 11082 in detail on June 22, 2010. Before the filament eruption, the opposite unidirectional material flows appeared in succession along the spine of the filament. The rising of the filament triggered two B-class flares at the upper part of the filament. As the bright material was injected into the filament from the sites of the flares, the filament exhibited a rapid uplift accompanying the counterclockwise rotation of the filament body. From the expansion of the filament, we can see that the filament is consisted of twisted magnetic field lines. The total twist of the filament is at least 5$\\pi$ obtained by using time slice method. According to the morphology change during the filament eruption, it is found that the active-region filament was a twisted flux rope and its unwinding motion was like a solar tornado. We also find that there was a continuous magn...

  9. Fusion of regularized femtosecond filaments in air: far field on-axis emission

    Science.gov (United States)

    Shipilo, D. E.; Panov, N. A.; Sunchugasheva, E. S.; Mokrousova, D. V.; Andreeva, V. A.; Kosareva, O. G.; Seleznev, L. V.; Savel'ev, A. B.; Ionin, A. A.; Chin, S. L.

    2016-11-01

    The fusion of several coherent 800 nm femtosecond filaments is induced experimentally and numerically by transmitting a beam through a mask with circular apertures followed by the focusing lens. The far-field image of the four-filament fusion region reveals bright on-axis maximum and differs drastically from the diffraction pattern of a low energy beam propagating through the mask in the linear regime. In 3D+time numerical simulations with the carrier wave resolved we show a factor-of-5 saturable growth in the peak plasma density with successive increase in the number of mask openings. An overall spectral blueshift of the fundamental and the third harmonics follows the plasma density increase. The simulated far-field on-axis emission agrees with the experiment and serves as the indication of nonlinear interaction in the fusion region.

  10. Robustness of the filamentation instability as shock mediator in arbitrarily oriented magnetic field

    CERN Document Server

    Bret, Antoine

    2011-01-01

    The filamentation instability (sometimes also referred to as "Weibel") is a key process in many astrophysical scenario. In the Fireball model for Gamma Ray Bursts, this instability is believed to mediate collisionless shock formation from the collision of two plasma shells. It has been known for long that a flow aligned magnetic field can completely cancel this instability. We show here that in the general case where there is an angle between the field and the flow, the filamentation instability can never be stabilized, regardless of the field strength. The presented model analyzes the stability of two symmetric counter-streaming cold electron/proton plasma shells. Relativistic effects are accounted for, and various exact analytical results are derived. This result guarantees the occurrence of the instability in realistic settings fulfilling the cold approximation.

  11. Oscillating Filaments: I - Oscillation and Geometrical Fragmentation

    CERN Document Server

    Gritschneder, Matthias; Burkert, Andreas

    2016-01-01

    We study the stability of filaments in equilibrium between gravity and internal as well as external pressure using the grid based AMR-code RAMSES. A homogeneous, straight cylinder below a critical line mass is marginally stable. However, if the cylinder is bent, e.g. with a slight sinusoidal perturbation, an otherwise stable configuration starts to oscillate, is triggered into fragmentation and collapses. This previously unstudied behavior allows a filament to fragment at any given scale, as long as it has slight bends. We call this process `geometrical fragmentation'. In our realization the spacing between the cores matches the wavelength of the sinusoidal perturbation, whereas up to now, filaments were thought to be only fragmenting on the characteristical scale set by the mass-to-line ratio. Using first principles, we derive the oscillation period as well as the collapse timescale analytically. To enable a direct comparison with observations, we study the line-of-sight velocity for different inclinations. ...

  12. Filament velocity scaling laws for warm ions

    Energy Technology Data Exchange (ETDEWEB)

    Manz, P. [Physik-Department E28, Technische Universität München, James-Franck-Str. 1, 85748 Garching (Germany); Max-Planck-Institut für Plasmaphysik, EURATOM Assoziation, Boltzmannstr. 2, 85748 Garching (Germany); Carralero, D.; Birkenmeier, G.; Müller, H. W.; Scott, B. D. [Max-Planck-Institut für Plasmaphysik, EURATOM Assoziation, Boltzmannstr. 2, 85748 Garching (Germany); Müller, S. H. [Center for Momentum Transport and Flow Organization, University of California at San Diego, San Diego 92093 (United States); Fuchert, G. [Insitut für Grenzflächenverfahrenstechnik und Plasmatechnologie, Universität Stuttgart, 70569 Stuttgart (Germany); Stroth, U. [Max-Planck-Institut für Plasmaphysik, EURATOM Assoziation, Boltzmannstr. 2, 85748 Garching (Germany); Physik-Department E28, Technische Universität München, James-Franck-Str. 1, 85748 Garching (Germany)

    2013-10-15

    The dynamics of filaments or blobs in the scrape-off layer of magnetic fusion devices are studied by magnitude estimates of a comprehensive drift-interchange-Alfvén fluid model. The standard blob models are reproduced in the cold ion case. Even though usually neglected, in the scrape-off layer, the ion temperature can exceed the electron temperature by an order of magnitude. The ion pressure affects the dynamics of filaments amongst others by adding up to the interchange drive and the polarisation current. It is shown how both effects modify the scaling laws for filament velocity in dependence of its size. Simplifications for experimentally relevant limit regimes are given. These are the sheath dissipation, collisional, and electromagnetic regime.

  13. Filament velocity scaling laws for warm ions

    Science.gov (United States)

    Manz, P.; Carralero, D.; Birkenmeier, G.; Müller, H. W.; Müller, S. H.; Fuchert, G.; Scott, B. D.; Stroth, U.

    2013-10-01

    The dynamics of filaments or blobs in the scrape-off layer of magnetic fusion devices are studied by magnitude estimates of a comprehensive drift-interchange-Alfvén fluid model. The standard blob models are reproduced in the cold ion case. Even though usually neglected, in the scrape-off layer, the ion temperature can exceed the electron temperature by an order of magnitude. The ion pressure affects the dynamics of filaments amongst others by adding up to the interchange drive and the polarisation current. It is shown how both effects modify the scaling laws for filament velocity in dependence of its size. Simplifications for experimentally relevant limit regimes are given. These are the sheath dissipation, collisional, and electromagnetic regime.

  14. Heterologous expression of cellobiohydrolases in filamentous fungi

    DEFF Research Database (Denmark)

    Zoglowek, Marta; Lübeck, Peter S.; Ahring, Birgitte K.

    2015-01-01

    Cellobiohydrolases are among the most important enzymes functioning in the hydrolysis of crystalline cellulose, significantly contributing to the efficient biorefining of recalcitrant lignocellulosic biomass into biofuels and bio-based products. Filamentous fungi are recognized as both well...... into valuable products. However, due to low cellobiohydrolase activities, certain fungi might be deficient with regard to enzymes of value for cellulose conversion, and improving cellobiohydrolase expression in filamentous fungi has proven to be challenging. In this review, we examine the effects of altering...... promoters, signal peptides, culture conditions and host post-translational modifications. For heterologous cellobiohydrolase production in filamentous fungi to become an industrially feasible process, the construction of site-integrating plasmids, development of protease-deficient strains and glycosylation...

  15. Flexible magnetic filaments in a shear flow

    Energy Technology Data Exchange (ETDEWEB)

    Cebers, Andrejs [Institute of Physics, University of Latvia, Salaspils-1 LV-2169 (Latvia)]. E-mail: aceb@tesla.sal.lv

    2006-05-15

    By flexible magnetic filament model its behavior under the simultaneous action of the shear flow and the magnetic field is investigated. It is found that for magnetoelastic numbers larger as the critical value, which depends on the shear rate, the periodic regime is established. For the values of the magnetoelastic number close to the critical the periodical regime is characterized by a rather slow development of the buckling instability due to the action of magnetic torques with the subsequent stage of the fast straightening of the filament. For the magnetoelastic numbers below the critical slightly bent shape of the filament orientated along the flow is established. The application of the results for the description of the viscoelasticity of the magnetorheological suspensions is discussed.

  16. MUSE discovers perpendicular arcs in the inner filament of Centaurus A

    Science.gov (United States)

    Hamer, S.; Salomé, P.; Combes, F.; Salomé, Q.

    2015-03-01

    Context. Evidence of active galactic nuclei (AGN) interaction with the intergalactic medium is observed in some galaxies and many cool core clusters. Radio jets are suspected to dig large cavities into the surrounding gas. In most cases, very large optical filaments (several kpc) are also seen all around the central galaxy. The origin of these filaments is still not understood. Star-forming regions are sometimes observed inside the filaments and are interpreted as evidence of positive feedback (AGN-triggered star formation). Aims: Centaurus A is a very nearby galaxy with huge optical filaments aligned with the AGN radio-jet direction. Here, we searched for line ratio variations along the filaments, kinematic evidence of shock-broadend line widths, and large-scale dynamical structures. Methods: We observed a 1' × 1' region around the so-called inner filament of Cen A with the Multi Unit Spectroscopic Explorer (MUSE) on the Very Large Telescope (VLT) during the Science Verification period. Results: (i) The brightest lines detected are the Hαλ6562.8, [NII]λ6583, [OIII]λ4959+5007 and [SII]λ6716+6731. MUSE shows that the filaments are made of clumpy structures inside a more diffuse medium aligned with the radio-jet axis. We find evidence of shocked shells surrounding the star-forming clumps from the line profiles, suggesting that the star formation is induced by shocks. The clump line ratios are best explained by a composite of shocks and star formation illuminated by a radiation cone from the AGN. (ii) We also report a previously undetected large arc-like structure: three streams running perpendicular to the main filament; they are kinematically, morphologically, and excitationally distinct. The clear difference in the excitation of the arcs and clumps suggests that the arcs are very likely located outside of the radiation cone and match the position of the filament only in projection. The three arcs are thus most consistent with neutral material swept along by a

  17. Production of recombinant proteins by filamentous fungi.

    Science.gov (United States)

    Ward, Owen P

    2012-01-01

    The initial focus of recombinant protein production by filamentous fungi related to exploiting the extraordinary extracellular enzyme synthesis and secretion machinery of industrial strains, including Aspergillus, Trichoderma, Penicillium and Rhizopus species, was to produce single recombinant protein products. An early recognized disadvantage of filamentous fungi as hosts of recombinant proteins was their common ability to produce homologous proteases which could degrade the heterologous protein product and strategies to prevent proteolysis have met with some limited success. It was also recognized that the protein glycosylation patterns in filamentous fungi and in mammals were quite different, such that filamentous fungi are likely not to be the most suitable microbial hosts for production of recombinant human glycoproteins for therapeutic use. By combining the experience gained from production of single recombinant proteins with new scientific information being generated through genomics and proteomics research, biotechnologists are now poised to extend the biomanufacturing capabilities of recombinant filamentous fungi by enabling them to express genes encoding multiple proteins, including, for example, new biosynthetic pathways for production of new primary or secondary metabolites. It is recognized that filamentous fungi, most species of which have not yet been isolated, represent an enormously diverse source of novel biosynthetic pathways, and that the natural fungal host harboring a valuable biosynthesis pathway may often not be the most suitable organism for biomanufacture purposes. Hence it is expected that substantial effort will be directed to transforming other fungal hosts, non-fungal microbial hosts and indeed non microbial hosts to express some of these novel biosynthetic pathways. But future applications of recombinant expression of proteins will not be confined to biomanufacturing. Opportunities to exploit recombinant technology to unravel the

  18. Heterologous gene expression in filamentous fungi.

    Science.gov (United States)

    Su, Xiaoyun; Schmitz, George; Zhang, Meiling; Mackie, Roderick I; Cann, Isaac K O

    2012-01-01

    Filamentous fungi are critical to production of many commercial enzymes and organic compounds. Fungal-based systems have several advantages over bacterial-based systems for protein production because high-level secretion of enzymes is a common trait of their decomposer lifestyle. Furthermore, in the large-scale production of recombinant proteins of eukaryotic origin, the filamentous fungi become the vehicle of choice due to critical processes shared in gene expression with other eukaryotic organisms. The complexity and relative dearth of understanding of the physiology of filamentous fungi, compared to bacteria, have hindered rapid development of these organisms as highly efficient factories for the production of heterologous proteins. In this review, we highlight several of the known benefits and challenges in using filamentous fungi (particularly Aspergillus spp., Trichoderma reesei, and Neurospora crassa) for the production of proteins, especially heterologous, nonfungal enzymes. We review various techniques commonly employed in recombinant protein production in the filamentous fungi, including transformation methods, selection of gene regulatory elements such as promoters, protein secretion factors such as the signal peptide, and optimization of coding sequence. We provide insights into current models of host genomic defenses such as repeat-induced point mutation and quelling. Furthermore, we examine the regulatory effects of transcript sequences, including introns and untranslated regions, pre-mRNA (messenger RNA) processing, transcript transport, and mRNA stability. We anticipate that this review will become a resource for researchers who aim at advancing the use of these fascinating organisms as protein production factories, for both academic and industrial purposes, and also for scientists with general interest in the biology of the filamentous fungi. Copyright © 2012 Elsevier Inc. All rights reserved.

  19. Properties of the cosmological filament between two clusters: A possible detection of a large-scale accretion shock by Suzaku

    Science.gov (United States)

    Akamatsu, H.; Fujita, Y.; Akahori, T.; Ishisaki, Y.; Hayashida, K.; Hoshino, A.; Mernier, F.; Yoshikawa, K.; Sato, K.; Kaastra, J. S.

    2017-09-01

    We report on the results of a Suzaku observation of the plasma in the filament located between the two massive clusters of galaxies, Abell 399 and Abell 401. Abell 399 (z = 0.0724) and Abell 401 (z = 0.0737) are expected to be in the initial phase of a cluster merger. In the region between the two clusters, we find a clear enhancement in the temperature of the filament plasma from 4 keV (expected value of a typical cluster temperature profile) to kT 6.5 keV. Our analysis also shows that filament plasma is present out to a radial distance of 15' (1.3 Mpc) from a line connecting the two clusters. The temperature profile is characterized by an almost flat radial shape with kT 6-7 keV within 10' or 0.8 Mpc. Across r = 8' from the axis, the temperature of the filament plasma shows a drop from 6.3 keV to 5.1 keV, indicating the presence of a shock front. The Mach number based on the temperature drop is estimated to be ℳ 1.3. We also successfully determined the abundance profile up to 15' (1.3 Mpc), showing an almost constant value (Z = 0.3 solar) at the cluster outskirts. We estimated the Compton y parameter to be 14.5 ± 1.3 × 10-6, which is in agreement with the Planck results (14-17 × 10-6 on the filament). The line-of-sight depth of the filament is l 1.1 Mpc, which indicates that the geometry of filament is likely a pancake shape rather than cylindrical. The total mass of the filamentary structure is 7.7 × 1013M⊙. We discuss a possible interpretation of the drop of X-ray emission at the rim of the filament, which was pushed out by the merging activity and formed by the accretion flow induced by the gravitational force of the filament.

  20. Reduced filamentation in high power semiconductor lasers

    DEFF Research Database (Denmark)

    Skovgaard, Peter M. W.; McInerney, John; O'Brien, Peter

    1999-01-01

    High brightness semiconductor lasers have applications in fields ranging from material processing to medicine. The main difficulty associated with high brightness is that high optical power densities cause damage to the laser facet and thus require large apertures. This, in turn, results in spatio...... in the optical field causes spatial hole-burning and thus filamentation. To reduce filamentation we propose a new, relatively simple design based on inhomogeneous pumping in which the injected current has a gradual transverse profile. We confirm the improved laser performance theoretically and experimentally...

  1. Generation of stable overlaps between antiparallel filaments

    CERN Document Server

    Johann, D; Kruse, K

    2015-01-01

    During cell division, sister chromatids are segregated by the mitotic spindle, a bipolar assembly of interdigitating antiparallel polar filaments called microtubules. Establishing a stable overlap region is essential for maintenance of bipolarity, but the underlying mechanisms are poorly understood. Using a particle-based stochastic model, we find that the interplay of motors and passive cross linkers can robustly generate partial overlaps between antiparallel filaments. Our analysis shows that motors reduce the overlap in a length-dependent manner, whereas passive cross linkers increase it independently of the length. In addition to maintaining structural integrity, passive cross linkers can thus also have a dynamic role for size regulation.

  2. Filament stretching rheometer: inertia compensation revisited

    DEFF Research Database (Denmark)

    Szabo, Peter; McKinley, Gareth H.

    2003-01-01

    The necessary inertia compensation used in the force balance for the filament stretching rheometer is derived for an arbitrary frame of reference. This enables the force balance to be used to extract correctly the extensional viscosity from measurements of the tensile force at either end of the e......The necessary inertia compensation used in the force balance for the filament stretching rheometer is derived for an arbitrary frame of reference. This enables the force balance to be used to extract correctly the extensional viscosity from measurements of the tensile force at either end...

  3. Nuclear flow in a filamentous fungus

    CERN Document Server

    Hickey, Patrick C; Read, Nick; Glass, N Louise; Roper, Marcus

    2012-01-01

    The syncytial cells of a filamentous fungus consist of a mass of growing, tube-like hyphae. Each extending tip is fed by a continuous flow of nuclei from the colony interior, pushed by a gradient in turgor pressure. The myco-fluidic flows of nuclei are complex and multidirectional, like traffic in a city. We map out the flows in a strain of the model filamentous fungus {\\it N. crassa} that has been transformed so that nuclei express either hH1-dsRed (a red fluorescent nuclear protein) or hH1-GFP (a green-fluorescent protein) and report our results in a fluid dynamics video.

  4. On the nature of star-forming filaments: I. Filament morphologies

    CERN Document Server

    Smith, Rowan J; Klessen, Ralf S

    2014-01-01

    We use a suite of high resolution molecular cloud simulations carried out with the moving mesh code Arepo to explore the nature of star-forming filaments. The simulated filaments are identified and categorised from column density maps in the same manner as for recent Herschel observations. When fit with a Plummer-like profile the filaments are in excellent agreement with observations, and have shallow power-law profiles of p~2.2 without the need for magnetic support. The derived filament widths depend on the data range that is fitted. When data within 1 pc of the filament centre is fitted with a Gaussian function, the average FWHM is ~0.3 pc, in agreement with predictions for accreting filaments. However, if the fit is constructed using only data within 0.35 pc of the centre, in order to better match the procedure used to derive filament widths from Herschel observations, the resulting FWHM is only ~0.2 pc. This value is larger than that measured in IC 5146 and Taurus, but is similar to that found in the Plan...

  5. Analytical Core Mass Function (CMF) from Filaments: Under Which Circumstances Can Filament Fragmentation Reproduce the CMF?

    Science.gov (United States)

    Lee, Yueh-Ning; Hennebelle, Patrick; Chabrier, Gilles

    2017-10-01

    Observations suggest that star formation in filamentary molecular clouds occurs in a two-step process, with the formation of filaments preceding that of prestellar cores and stars. Here, we apply the gravoturbulent fragmentation theory of Hennebelle & Chabrier to a filamentary environment, taking into account magnetic support. We discuss the induced geometrical effect on the cores, with a transition from 3D geometry at small scales to 1D at large ones. The model predicts the fragmentation behavior of a filament for a given mass per unit length (MpL) and level of magnetization. This core mass function (CMF) for individual filaments is then convolved with the distribution of filaments to obtain the final system CMF. The model yields two major results. (i) The filamentary geometry naturally induces a hierarchical fragmentation process, first into groups of cores, separated by a length equal to a few filament Jeans lengths, i.e., a few times the filament width. These groups then fragment into individual cores. (ii) Non-magnetized filaments with high MpL are found to fragment excessively, at odds with observations. This is resolved by taking into account the magnetic field (treated simply as additional pressure support). The present theory suggests two complementary modes of star formation: although small (spherical or filamentary) structures will collapse directly into prestellar cores, according to the standard Hennebelle–Chabrier theory, the large (filamentary) ones, the dominant population according to observations, will follow the aforedescribed two-step process.

  6. Modelling the chemistry of star-forming filaments - II. Testing filament characteristics with synthetic observations

    Science.gov (United States)

    Seifried, D.; Sánchez-Monge, Á.; Suri, S.; Walch, S.

    2017-06-01

    We present synthetic continuum and 13CO and C18O line emission observations of dense and cold filaments. The filaments are dynamically evolved using 3D-magnetohydrodynamic simulations that include one of the largest on-the-fly chemical networks used to date, which models the detailed evolution of H2 and CO. We investigate the reliability of observable properties, in particular filament mass and width, under different simulation conditions like magnetic field orientation and cosmic ray ionization rate. We find that filament widths of ˜0.1 pc can be probed with both line and continuum emission observations with a high accuracy (deviations ≤20 per cent). However, the width of more narrow filaments can be significantly overestimated by up to a factor of a few. Masses obtained via the dust emission are accurate within a few per cent whereas the masses inferred from molecular line emission observations deviate from the actual mass by up to a factor of 10 and show large differences for different J transitions. The inaccurate estimate of filament masses and widths of narrow filaments using molecular line observations can be attributed to (i) the non-isothermal state of the filaments, (ii) optical depth effects and (iii) the subthermally excited state of CO, while inclination effects and opacity correction only influence the obtained masses and widths by less than 50 per cent. Both, mass and width estimates, can be improved by using two isotopes to correct for the optical depth. Since gas and dust temperatures generally differ (by up to 25 K), the filaments appear more gravitationally unstable if the (too low) dust temperature is used for the stability analysis.

  7. The Influence of Filaments in the Private Flux Region on Divertor Particle and Power Deposition

    CERN Document Server

    Harrison, J R; Thornton, A J; Walkden, N R

    2015-01-01

    The transport of particles via intermittent filamentary structures in the private flux region of plasmas in the MAST tokamak has been investigated using a fast framing camera recording visible light emission from the volume of the lower divertor, as well as Langmuir probes and IR thermography monitoring particle and power fluxes to plasma-facing surfaces in the divertor. The visible camera data suggests that, in the divertor volume, fluctuations in light emission above the X-point are strongest in the scrape-off layer (SOL). Conversely, in the region below the X-point, it is found that these fluctuations are strongest in the private flux region (PFR) of the inner divertor leg. Detailed analysis of the appearance of these filaments in the camera data suggests that they are approximately circular, around 1-2cm in diameter. The most probable toroidal mode number is between 2 and 3. These filaments eject plasma deeper into the private flux region, sometimes by the production of secondary filaments, moving at a sp...

  8. Plasma parameters controlled by remote electron shower in a double plasma device

    Science.gov (United States)

    Mishra, M. K.; Phukan, A.

    2012-07-01

    The principal feature of this experiment is the electron showers consisting of three tungsten wires embedded by the plasma, which are heated up consequently emitting electrons inside the diffused plasma to control the plasma parameters in the discharge section of a double plasma device. These cold electrons emitted by the heated filament are free from maintenance of discharge which is sustained in the source section. The target plasma, where electrons are injected is produced as a result of diffusion from the source section. It is found that, plasma density and plasma potential can be effectively controlled in this way.

  9. Surface analysis of CVD diamond exposed to fusion plasma

    NARCIS (Netherlands)

    Porro, S.; De Temmerman, G.; MacLaren, D. A.; Lisgo, S.; Rudakov, D. L.; Westerhout, J.; Wiora, M.; John, P.; Villalpando, I.; Wilson, J. I. B.

    2010-01-01

    Microcrystalline undoped and heavily boron-doped polycrystalline diamond layers have been deposited on various substrates by hot filament CVD and exposed to hydrogen plasma in a linear plasma reactor (Pilot-PSI, The Netherlands) that simulates the high flux and high density plasma conditions of toka

  10. High-resolution Observations of Sympathetic Filament Eruptions by NVST

    Science.gov (United States)

    Su, Yingna; Li, Shangwei; Zhou, Tuanhui; Van Ballegooijen, Adriaan A.; Sun, Xudong; Ji, Haisheng

    2017-08-01

    We investigate two sympathetic filament eruptions observed by the New Vacuum Solar Telescope (NVST) on 2015 October 15. The full picture of the eruptions is obtained from the corresponding SDO/AIA observations. The two filaments start from the east border of active region NOAA 12434 in the north and end in one large quiescent filament channel in the south. The left filament erupts firstly, followed by the right filament eruption about 10 minutes later. Clear twist structure and rotating motion are observed in both filaments during the eruption. Both eruptions are failed, since the filaments firstly rise up, then flow towards the south and merge into the southern large quiescent filament. We also observe repeating activations of mini filaments below the right filament after its eruption. Using magnetic field models constructed based on SDO/HMI magnetograms by flux rope insertion method, we find that the left filament eruption is likely to be triggered by kink instability, while weakening of overlying magnetic fields due to magnetic reconnection at an X-point between the two filament systems might play an important role in the onset of the right filament eruption.

  11. The appearance and propagation of filaments in the private flux region in Mega Amp Spherical Tokamak

    Energy Technology Data Exchange (ETDEWEB)

    Harrison, J. R.; Fishpool, G. M.; Thornton, A. J. [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Walkden, N. R. [York Plasma Institute, Department of Physics, University of York, Heslington, York YO10 5DD (United Kingdom)

    2015-09-15

    The transport of particles via intermittent filamentary structures in the private flux region (PFR) of plasmas in the MAST tokamak has been investigated using a fast framing camera recording visible light emission from the volume of the lower divertor, as well as Langmuir probes and IR thermography monitoring particle and power fluxes to plasma-facing surfaces in the divertor. The visible camera data suggest that, in the divertor volume, fluctuations in light emission above the X-point are strongest in the scrape-off layer (SOL). Conversely, in the region below the X-point, it is found that these fluctuations are strongest in the PFR of the inner divertor leg. Detailed analysis of the appearance of these filaments in the camera data suggests that they are approximately circular, around 1–2 cm in diameter, but appear more elongated near the divertor target. The most probable toroidal quasi-mode number is between 2 and 3. These filaments eject plasma deeper into the private flux region, sometimes by the production of secondary filaments, moving at a speed of 0.5–1.0 km/s. Probe measurements at the inner divertor target suggest that the fluctuations in the particle flux to the inner target are strongest in the private flux region, and that the amplitude and distribution of these fluctuations are insensitive to the electron density of the core plasma, auxiliary heating and whether the plasma is single-null or double-null. It is found that the e-folding width of the time-average particle flux in the PFR decreases with increasing plasma current, but the fluctuations appear to be unaffected. At the outer divertor target, the fluctuations in particle and power fluxes are strongest in the SOL.

  12. Effect of microwave frequency on plasma formation in air breakdown at atmospheric pressure

    Institute of Scientific and Technical Information of China (English)

    赵朋程; 郭立新; 李慧敏

    2015-01-01

    Microwave breakdown at atmospheric pressure causes the formation of a discrete plasma structure. The one-dimensional fluid model coupling Maxwell equations with plasma fluid equations is used to study the effect of the mi-crowave frequency on the formation of air plasma. Simulation results show that, the filamentary plasma array propagating toward the microwave source is formed at different microwave frequencies. As the microwave frequency decreases, the ratio of the distance between two adjacent plasma filaments to the corresponding wavelength remains almost unchanged (on the order of 1/4), while the plasma front propagates more slowly due to the increase in the formation time of the new plasma filament.

  13. Filaments in the southern giant lobe of Centaurus A: constraints on nature and origin from modelling and GMRT observations

    CERN Document Server

    Wykes, Sarka; Hardcastle, Martin J; Achterberg, Abraham; Jones, Thomas W; Jerjen, Helmut; Orru, Emanuela; Lazarian, Alex; Shimwell, Timothy W; Wise, Michael W; Kronberg, Philipp P

    2014-01-01

    We present results from imaging of the radio filaments in the southern giant lobe of Centaurus A using data from GMRT observations at 325 and 235 MHz, and outcomes from filament modelling. The observations reveal a rich filamentary structure, largely matching the morphology at 1.4 GHz. We find no clear connection of the filaments to the jet. We seek to constrain the nature and origin of the vertex and vortex filaments associated with the lobe and their role in high-energy particle acceleration. We deduce that these filaments are at most mildly overpressured with respect to the global lobe plasma showing no evidence of large-scale efficient Fermi I-type particle acceleration, and persist for ~ 2-3 Myr. We demonstrate that the dwarf galaxy KK 196 (AM 1318-444) cannot account for the features, and that surface plasma instabilities, the internal sausage mode and radiative instabilities are highly unlikely. An internal tearing instability and the kink mode are allowed within the observational and growth time const...

  14. The exo-metabolome in filamentous fungi

    DEFF Research Database (Denmark)

    Thrane, Ulf; Andersen, Birgitte; Frisvad, Jens Christian

    2007-01-01

    Filamentous fungi are a diverse group of eukaryotic microorganisms that have a significant impact on human life as spoilers of food and feed by degradation and toxin production. They are also most useful as a source of bulk and fine chemicals and pharmaceuticals. This chapter focuses on the exo...

  15. The Apis mellifera filamentous virus genome

    Science.gov (United States)

    A complete reference genome of the Apis mellifera Filamentous virus (AmFV) was determined using Illumina Hiseq sequencing. The AmFV genome is a double strand DNA molecule of approximately 498’500 nucleotides with a GC content of 50.8%. It encompasses 251 non overlapping open reading frames (ORFs), e...

  16. Modelling the morphology of filamentous microorganisms

    DEFF Research Database (Denmark)

    Nielsen, Jens Bredal

    1996-01-01

    The rapid development in image analysis techniques has made it possible to study the growth kinetics of filamentous microorganisms in more detail than previously, However, owing to the many different processes that influence the morphology it is important to apply mathematical models to extract...

  17. Conformational phases of membrane bound cytoskeletal filaments

    Science.gov (United States)

    Quint, David A.; Grason, Gregory; Gopinathan, Ajay

    2013-03-01

    Membrane bound cytoskeletal filaments found in living cells are employed to carry out many types of activities including cellular division, rigidity and transport. When these biopolymers are bound to a membrane surface they may take on highly non-trivial conformations as compared to when they are not bound. This leads to the natural question; What are the important interactions which drive these polymers to particular conformations when they are bound to a surface? Assuming that there are binding domains along the polymer which follow a periodic helical structure set by the natural monomeric handedness, these bound conformations must arise from the interplay of the intrinsic monomeric helicity and membrane binding. To probe this question, we study a continuous model of an elastic filament with intrinsic helicity and map out the conformational phases of this filament for various mechanical and structural parameters in our model, such as elastic stiffness and intrinsic twist of the filament. Our model allows us to gain insight into the possible mechanisms which drive real biopolymers such as actin and tubulin in eukaryotes and their prokaryotic cousins MreB and FtsZ to take on their functional conformations within living cells.

  18. Filament eruption with apparent reshuffle of endpoints

    CERN Document Server

    Filippov, Boris

    2014-01-01

    Filament eruption on 30 April - 1 May 2010, which shows the reconnection of one filament leg with a region far away from its initial position, is analyzed. Observations from three viewpoints are used for as precise as possible measurements of endpoint coordinates. The northern leg of the erupting prominence loop 'jumps' laterally to the latitude lower than the latitude of the originally southern endpoint. Thus, the endpoints reshuffled their positions in the limb view. Although this behaviour could be interpreted as the asymmetric zipping-like eruption, it does not look very likely. It seems more likely to be reconnection of the flux-rope field lines in its northern leg with ambient coronal magnetic field lines rooted in a quiet region far from the filament. From calculations of coronal potential magnetic field, we found that the filament before the eruption was stable for vertical displacements, but was liable to violation of the horizontal equilibrium. This is unusual initiation of an eruption with combinat...

  19. Morphology and rheology in filamentous cultivations.

    Science.gov (United States)

    Wucherpfennig, T; Kiep, K A; Driouch, H; Wittmann, C; Krull, R

    2010-01-01

    Because of their metabolic diversity, high production capacity, secretion efficiency, and capability of carrying out posttranslational modifications, filamentous fungi are widely exploited as efficient cell factories in the production of metabolites, bioactive substances, and native or heterologous proteins, respectively. There is, however, a complex relationship between the morphology of these microorganisms, transport phenomena, the viscosity of the cultivation broth, and related productivity. The morphological characteristics vary between freely dispersed mycelia and distinct pellets of aggregated biomass, every growth form having a distinct influence on broth rheology. Hence, the advantages and disadvantages for mycelial or pellet cultivation have to be balanced out carefully. Because of the still inadequate understanding of the morphogenesis of filamentous microorganisms, fungal morphology is often a bottleneck of productivity in industrial production. To obtain an optimized production process, it is of great importance to gain a better understanding of the molecular and cell biology of these microorganisms as well as the relevant approaches in biochemical engineering. In this chapter, morphology and growth of filamentous fungi are described, with special attention given to specific problems as they arise from fungal growth forms; growth and mass transfer in fungal biopellets are discussed as an example. To emphasize the importance of the flow behavior of filamentous cultivation broths, an introduction to rheology is also given, reviewing important rheological models and recent studies concerning rheological parameters. Furthermore, current knowledge on morphology and productivity in relation to the environom is outlined in the last section of this review. Copyright 2010 Elsevier Inc. All rights reserved.

  20. Linear viscoelastic characterization from filament stretching rheometry

    DEFF Research Database (Denmark)

    Wingstrand, Sara Lindeblad; Alvarez, Nicolas J.; Hassager, Ole

    viscoelasticity well into the nonlinear regime. Therefore at present, complete rheological characterization of a material requires two apparatuses: a shear and an extensional rheometer. This work is focused on developing a linear viscoelastic protocol for the filament stretching rheometer (FSR) in order...

  1. Filament stretching rheometry of polymer melts

    DEFF Research Database (Denmark)

    Hassager, Ole; Nielsen, Jens Kromann; Rasmussen, Henrik Koblitz

    2005-01-01

    The Filament Stretching Rheometry (FSR) method developed by Sridhar, McKinley and coworkers for polymer solutions has been extended to be used also for polymer melts. The design of a melt-FSR will be described and differences to conventional melt elongational rheometers will be pointed out. Results...

  2. Using Drosophila for Studies of Intermediate Filaments.

    Science.gov (United States)

    Bohnekamp, Jens; Cryderman, Diane E; Thiemann, Dylan A; Magin, Thomas M; Wallrath, Lori L

    2016-01-01

    Drosophila melanogaster is a useful organism for determining protein function and modeling human disease. Drosophila offers a rapid generation time and an abundance of genomic resources and genetic tools. Conservation in protein structure, signaling pathways, and developmental processes make studies performed in Drosophila relevant to other species, including humans. Drosophila models have been generated for neurodegenerative diseases, muscular dystrophy, cancer, and many other disorders. Recently, intermediate filament protein diseases have been modeled in Drosophila. These models have revealed novel mechanisms of pathology, illuminated potential new routes of therapy, and make whole organism compound screens feasible. The goal of this chapter is to outline steps to study intermediate filament function and model intermediate filament-associated diseases in Drosophila. The steps are general and can be applied to study the function of almost any protein. The protocols outlined here are for both the novice and experienced Drosophila researcher, allowing the rich developmental and cell biology that Drosophila offers to be applied to studies of intermediate filaments.

  3. Self-assembly of Artificial Actin Filaments

    Science.gov (United States)

    Grosenick, Christopher; Cheng, Shengfeng

    Actin Filaments are long, double-helical biopolymers that make up the cytoskeleton along with microtubules and intermediate filaments. In order to further understand the self-assembly process of these biopolymers, a model to recreate actin filament geometry was developed. A monomer in the shape of a bent rod with vertical and lateral binding sites was designed to assemble into single or double helices. With Molecular Dynamics simulations, a variety of phases were observed to form by varying the strength of the binding sites. Ignoring lateral binding sites, we have found a narrow range of binding strengths that lead to long single helices via various growth pathways. When lateral binding strength is introduced, double helices begin to form. These double helices self-assemble into substantially more stable structures than their single helix counterparts. We have found double helices to form long filaments at about half the vertical binding strength of single helices. Surprisingly, we have found that triple helices occasionally form, indicating the importance of structural regulation in the self-assembly of biopolymers.

  4. Filament stretching rheometry of polymer melts

    DEFF Research Database (Denmark)

    Hassager, Ole; Nielsen, Jens Kromann; Rasmussen, Henrik Koblitz

    2005-01-01

    The Filament Stretching Rheometry (FSR) method developed by Sridhar, McKinley and coworkers for polymer solutions has been extended to be used also for polymer melts. The design of a melt-FSR will be described and differences to conventional melt elongational rheometers will be pointed out. Results...

  5. Featured Image: A Filament Forms and Erupts

    Science.gov (United States)

    Kohler, Susanna

    2017-06-01

    This dynamic image of active region NOAA 12241 was captured by the Solar Dynamics Observatorys Atmospheric Imaging Assembly in December 2014. Observations of this region from a number of observatories and instruments recently presented by Jincheng Wang (University of Chinese Academy of Sciences) and collaborators reveal details about the formation and eruption of a long solar filament. Wang and collaborators show that the right part of the filament formed by magnetic reconnection between two bundles of magnetic field lines, while the left part formed as a result of shearing motion. When these two parts interacted, the filament erupted. You can read more about the teams results in the article linked below. Also, check out this awesome video of the filament formation and eruption, again by SDO/AIA:http://cdn.iopscience.com/images/0004-637X/839/2/128/Full/apjaa6bf3f1_video.mp4CitationJincheng Wang et al 2017 ApJ 839 128. doi:10.3847/1538-4357/aa6bf3

  6. Filament Channel Formation, Eruption, and Jet Generation

    Science.gov (United States)

    DeVore, C. Richard; Antiochos, Spiro K.; Karpen, Judith T.

    2017-08-01

    The mechanism behind filament-channel formation is a longstanding mystery, while that underlying the initiation of coronal mass ejections and jets has been studied intensively but is not yet firmly established. In previous work, we and collaborators have investigated separately the consequences of magnetic-helicity condensation (Antiochos 2013) for forming filament channels (Zhao et al. 2015; Knizhnik et al. 2015, 2017a,b) and of the embedded-bipole model (Antiochos 1996) for generating reconnection-driven jets (Pariat et al. 2009, 2010, 2015, 2016; Wyper et al. 2016, 2017). Now we have taken a first step toward synthesizing these two lines of investigation. Our recent study (Karpen et al. 2017) of coronal-hole jets with gravity and wind employed an ad hoc, large-scale shear flow at the surface to introduce magnetic free energy and form the filament channel. In this effort, we replace the shear flow with an ensemble of local rotation cells, to emulate the Sun’s ever-changing granules and supergranules. As in our previous studies, we find that reconnection between twisted flux tubes within the closed-field region concentrates magnetic shear and free energy near the polarity inversion line, forming the filament channel. Onset of reconnection between this field and the external, unsheared, open field releases stored energy to drive the impulsive jet. We discuss the results of our new simulations with implications for understanding solar activity and space weather.

  7. Filamentous bacteria transport electrons over centimetre distances

    DEFF Research Database (Denmark)

    Pfeffer, Christian; Larsen, Steffen; Song, Jie

    2012-01-01

    across centimetre-wide zones. Here we present evidence that the native conductors are long, filamentous bacteria. They abounded in sediment zones with electric currents and along their length they contained strings with distinct properties in accordance with a function as electron transporters. Living...

  8. Assembly characteristics of plant keratin intermediate filaments in vitro

    Institute of Scientific and Technical Information of China (English)

    闵光伟; 杨澄; 佟向军; 翟中和

    1999-01-01

    After selective extraction and purification, plant keratin intermediate filaments were reassembled in vitro. Scanning tunneling microscope (STM) and transmission electron microscope (TEM) micrographs showed that acidic keratins and basic keratins can assemble into dimers and further into 10 nm filaments in vitro. In higher magnification images, it can be seen that fully assembled plant keratin intermediate filaments consist of several thinner filaments of 3 nm in diameter, which indicates the formation of protofilaments in the assembly processes. One of the explicit features of plant keratin intermediate filaments is a 24—25 nm periodic structural repeat alone the axis of beth the 10 nm filaments and protofilaments. The periodic repeat is one of the fundamental characteristic of all intermediate filaments, and demonstrates the half staggered arrangement of keratin molecules within the filaments.

  9. Mechanical heterogeneity favors fragmentation of strained actin filaments.

    Science.gov (United States)

    De La Cruz, Enrique M; Martiel, Jean-Louis; Blanchoin, Laurent

    2015-05-05

    We present a general model of actin filament deformation and fragmentation in response to compressive forces. The elastic free energy density along filaments is determined by their shape and mechanical properties, which were modeled in terms of bending, twisting, and twist-bend coupling elasticities. The elastic energy stored in filament deformation (i.e., strain) tilts the fragmentation-annealing reaction free-energy profile to favor fragmentation. The energy gradient introduces a local shear force that accelerates filament intersubunit bond rupture. The severing protein, cofilin, renders filaments more compliant in bending and twisting. As a result, filaments that are partially decorated with cofilin are mechanically heterogeneous (i.e., nonuniform) and display asymmetric shape deformations and energy profiles distinct from mechanically homogenous (i.e., uniform), bare actin, or saturated cofilactin filaments. The local buckling strain depends on the relative size of the compliant segment as well as the bending and twisting rigidities of flanking regions. Filaments with a single bare/cofilin-decorated boundary localize energy and force adjacent to the boundary, within the compliant cofilactin segment. Filaments with small cofilin clusters were predicted to fragment within the compliant cofilactin rather than at boundaries. Neglecting contributions from twist-bend coupling elasticity underestimates the energy density and gradients along filaments, and thus the net effects of filament strain to fragmentation. Spatial confinement causes compliant cofilactin segments and filaments to adopt higher deformation modes and store more elastic energy, thereby promoting fragmentation. The theory and simulations presented here establish a quantitative relationship between actin filament fragmentation thermodynamics and elasticity, and reveal how local discontinuities in filament mechanical properties introduced by regulatory proteins can modulate both the severing efficiency

  10. Flexible ferromagnetic filaments and the interface with biology

    Energy Technology Data Exchange (ETDEWEB)

    Erglis, K.; Belovs, M. [University of Latvia, Zellu 8, Riga LV-1002 (Latvia); Cebers, A. [University of Latvia, Zellu 8, Riga LV-1002 (Latvia)], E-mail: aceb@tesla.sal.lv

    2009-04-15

    Flexible ferromagnetic filaments are studied both theoretically and experimentally. Two main deformation modes of the filament at magnetic field inversion are theoretically described and observed experimentally by using DNA-linked chains of ferromagnetic particles. Anomalous orientation of ferromagnetic filaments perpendicular to AC field with a frequency which is high enough is predicted and confirmed experimentally. By experimental studies of magnetotactic bacteria it is demonstrated how these properties of ferromagnetic filaments may be used to measure the flexibility of the chain of magnetosomes.

  11. Architecture and fine structure of gill filaments in the brown mussel, perna perna

    CSIR Research Space (South Africa)

    Gregory, MA

    1996-10-01

    Full Text Available attention was paid to filament architecture, enervation of filaments, number and type of cells populating filament epithelia and variations in epithelial cell morphotogy and cilia ultra structure. Filament shape was maintained by thickened chitin...

  12. Intermittent Divertor Filaments in the National Spherical Torus Experiment and Their Relation to Midplane Blobs

    Energy Technology Data Exchange (ETDEWEB)

    R.J. Maqueda, D.P. Stotler and the NSTX Team.

    2010-05-19

    While intermittent filamentary structures, also known as blobs, are routinely seen in the low-field-side scrape-off layer of the National Spherical Torus Experiment (NSTX) (Ono et al 2000 Nucl. Fusion 40 557), fine structured filaments are also seen on the lower divertor target plates of NSTX. These filaments, not associated with edge localized modes, correspond to the interaction of the turbulent blobs seen near the midplane with the divertor plasma facing components. The fluctuation level of the neutral lithium light observed at the divertor, and the skewness and kurtosis of its probability distribution function, is similar to that of midplane blobs seen in Dα; e.g. increasing with increasing radii outside the outer strike point (OSP) (separatrix). In addition, their toroidal and radial movement agrees with the typical movement of midplane blobs. Furthermore, with the appropriate magnetic topology, i.e. mapping between the portion of the target plates being observed into the field of view of the midplane gas puff imaging diagnostic, very good correlation is observed between the blobs and the divertor filaments. The correlation between divertor plate filaments and midplane blobs is lost close to the OSP. This latter observation is consistent with the existence of ‘magnetic shear disconnection’ due to the lower X-point, as proposed by Cohen and Ryutov (1997 Nucl. Fusion 37 621).

  13. In-vitro thrombogenicity assessment of polymer filament modified and native platinum embolic coils.

    Science.gov (United States)

    Girdhar, Gaurav; Read, Megan; Sohn, Jihae; Shah, Chirag; Shrivastava, Sanjay

    2014-04-15

    Embolic coils have been used to treat intracranial aneurysms using an endovascular approach for more than two decades. However, significant aneurysm recanalization rates have been reported specifically in large and giant aneurysms. Adding filaments to bare Platinum coils is considered a modification and has been proposed to achieve higher aneurysm occlusion rates as compared to bare Platinum coils. Quantitative information - in terms of thrombin generation potential of these modifications - is however lacking. We report here in vitro thrombogenicity of Platinum coils containing Nylon (Axium™ MicroFx™ Nylon coil) and PGLA (Axium™ MicroFx™ PGLA coil) filaments and compare them with equivalent bare Platinum Axium™ coils. We utilize a quantitative method that tracks the formation of thrombin upon exposure of the test samples to human platelet rich plasma using a slow binding fluorogenic substrate. We report a significant increase in the total thrombin turnover, the peak thrombin amount and the rate of thrombin generation for the Axium™ MicroFx™ coils and filaments compared to the Axium™ coils and Platinum wire. Nylon and PGLA filaments added to bare Platinum coils increase thrombogenicity of coils. This study offers a robust quantitative method to compare thrombus formation efficacy of embolic coils under static conditions. Copyright © 2014 Elsevier B.V. All rights reserved.

  14. Flux cancellation and the evolution of the eruptive filament of 2011 June 7

    CERN Document Server

    Yardley, S L; Williams, D R; van Driel-Gesztelyi, L; Valori, G; Dacie, S

    2016-01-01

    We investigate whether flux cancellation is responsible for the formation of a very massive filament resulting in the spectacular 2011 June 7 eruption. We analyse and quantify the amount of flux cancellation that occurs in NOAA AR 11226 and its two neighbouring ARs (11227 & 11233) using line-of-sight magnetograms from the Heliospheric Magnetic Imager. During a 3.6-day period building up to the filament eruption, 1.7 x 10^21 Mx, 21% of AR 11226's maximum magnetic flux, was cancelled along the polarity inversion line (PIL) where the filament formed. If the flux cancellation continued at the same rate up until the eruption then up to 2.8 x 10^21 Mx (34% of the AR flux) may have been built into the magnetic configuration that contains the filament plasma. The large flux cancellation rate is due to an unusual motion of the positive polarity sunspot, which splits, with the largest section moving rapidly towards the PIL. This motion compresses the negative polarity and leads to the formation of an orphan penumbr...

  15. A giant quiescent solar filament observed with high-resolution spectroscopy

    CERN Document Server

    Kuckein, C; Denker, C

    2016-01-01

    A giant, quiet-Sun filament was observed with the high-resolution Echelle spectrograph at the Vacuum Tower Telescope at Observatorio del Teide on 2011 November 15. A mosaic of spectra (10 maps of 100" X 182") was recorded simultaneously in the chromospheric absorption lines H-alpha and Na I D2. Physical parameters of the filament plasma were derived using Cloud Model (CM) inversions and line core fits. The spectra were complemented with full-disk filtergrams (He I 10830 A, H-alpha, and Ca II K) of the Chromspheric Telescope (ChroTel) and full-disk magnetograms of HMI. The filament had extremely large linear dimensions (817"), which corresponds to about 658 Mm along a great circle on the solar surface. A total amount of 175119 H-alpha contrast profiles were inverted using the CM approach. The inferred mean line-of-sight (LOS) velocity, Doppler width, and source function were similar to previous works of smaller quiescent filaments. However, the derived optical thickness was larger. LOS velocity trends inferred...

  16. Tether-cutting Reconnection between Two Solar Filaments Triggering Outflows and a Coronal Mass Ejection

    CERN Document Server

    Chen, Huadong; Li, Leping; Ma, Suli

    2016-01-01

    Triggering mechanisms of solar eruptions have long been a challenge. A few previous case studies have indicated that preceding gentle filament merging via magnetic reconnection may launch following intense eruption, according with the tether-cutting (TC) model. However, detailed process of TC reconnection between filaments has not been exhibited yet. In this work, we report the high resolution observations from the Interface Region Imaging Spectrometer (IRIS) of TC reconnection between two sheared filaments in NOAA active region 12146. The TC reconnection commenced since 15:35 UT on 2014 August 29 and triggered an eruptive GOES C4.3-class flare 8 minutes later. An associated coronal mass ejection appeared in the field of view of SOHO/LASCO C2 about 40 minutes later. Thanks to the high spatial resolution of IRIS data, bright plasma outflows generated by the TC reconnection are clearly observed, which moved along the subarcsecond fine-scale flux tube structures in the erupting filament. Based on the imaging and...

  17. Cumulative effect of Weibel-type instabilities in counterstreaming plasmas with non-Maxwellian anisotropies

    CERN Document Server

    Lázár, M; Shukla, P K

    2008-01-01

    Counterstreaming plasma structures are widely present in laboratory experiments and astrophysical systems, and they are investigated either to prevent unstable modes arising in beam-plasma experiments or to prove the existence of large scale magnetic fields in astrophysical objects. Filamentation instability arises in a counterstreaming plasma and is responsible for the magnetization of the plasma. Filamentationally unstable mode is described by assuming that each of the counterstreaming plasmas has an isotropic Lorentzian (kappa) distribution. In this case, the filamentation instability growth rate can reach a maximum value markedly larger than that for a a plasma with a Maxwellian distribution function. This behaviour is opposite to what was observed for the Weibel instability growth rate in a bi-kappa plasma, which is always smaller than that obtained for a bi-Maxwellian plasma. The approach is further generalized for a counterstreaming plasma with a bi-kappa temperature anisotropy. In this case, the filam...

  18. Non-LTE Inversion of Spectropolarimetric and Spectroscopic Observations of a Small Active-region Filament Observed at the VTT

    Science.gov (United States)

    Schwartz, P.; Balthasar, H.; Kuckein, C.; Koza, J.; Gömöry, P.; Rybák, J.; Kučera, A.; Heinzel, P.

    2016-04-01

    An active region mini-filament was observed by VTT simultaneously in the HeI 10 830 Å triplet by the TIP 1 spectropolarimeter, in Hα by the TESOS Fabry-Pérot interferometer, and in Ca II 8542 Å by the VTT spectrograph. The spectropolarimetric data were inverted using the HAZEL code and Hα profiles were modelled solving a NLTE radiative transfer in a simple isobaric and isothermal 2D slab irradiated both from bottom and sides. It was found that the mini-filament is composed of horizontal fluxtubes, along which the cool plasma of T˜10 000 K can flow by very large - even supersonic - velocities.

  19. Nondiffusive plasma transport at tokamak edge

    Science.gov (United States)

    Krasheninnikov, S. I.

    2000-10-01

    Recent findings show that cross field edge plasma transport at tokamak edge does not necessarily obey a simple diffusive law [1], the only type of a transport model applied so far in the macroscopic modeling of edge plasma transport. Cross field edge transport is more likely due to plasma filamentation with a ballistic motion of the filaments towards the first wall. Moreover, it so fast that plasma recycles on the main chamber first wall rather than to flow into divertor as conventional picture of edge plasma fluxes suggests. Crudely speaking particle recycling wise diverted tokamak operates in a limiter regime due to fast anomalous non-diffusive cross field plasma transport. Obviously that this newly found feature of edge plasma anomalous transport can significantly alter a design of any future reactor relevant tokamaks. Here we present a simple model describing the motion of the filaments in the scrape off layer and discuss it implications for experimental observations. [1] M. Umansky, S. I. Krasheninnikov, B. LaBombard, B. Lipschultz, and J. L. Terry, Phys. Plasmas 6 (1999) 2791; M. Umansky, S. I. Krasheninnikov, B. LaBombard and J. L. Terry, Phys. Plasmas 5 (1998) 3373.

  20. Driven transport on open filaments with interfilament switching processes

    Science.gov (United States)

    Ghosh, Subhadip; Pagonabarraga, Ignacio; Muhuri, Sudipto

    2017-02-01

    We study a two-filament driven lattice gas model with oppositely directed species of particles moving on two parallel filaments with filament-switching processes and particle inflow and outflow at filament ends. The filament-switching process is correlated with the occupation number of the adjacent site such that particles switch filaments with finite probability only when oppositely directed particles meet on the same filament. This model mimics some of the coarse-grained features observed in context of microtubule-(MT) based intracellular transport, wherein cellular cargo loaded and off-loaded at filament ends are transported on multiple parallel MT filaments and can switch between the parallel microtubule filaments. We focus on a regime where the filaments are weakly coupled, such that filament-switching rate of particles scale inversely as the length of the filament. We find that the interplay of (off-) loading processes at the boundaries and the filament-switching process of particles leads to some distinctive features of the system. These features includes occurrence of a variety of phases in the system with inhomogeneous density profiles including localized density shocks, density difference across the filaments, and bidirectional current flows in the system. We analyze the system by developing a mean field (MF) theory and comparing the results obtained from the MF theory with the Monte Carlo (MC) simulations of the dynamics of the system. We find that the steady-state density and current profiles of particles and the phase diagram obtained within the MF picture matches quite well with MC simulation results. These findings maybe useful for studying multifilament intracellular transport.

  1. Arcade Implosion Caused by a Filament Eruption in a Flare

    Science.gov (United States)

    Wang, Juntao; Simões, P. J. A.; Fletcher, L.; Thalmann, J. K.; Hudson, H. S.; Hannah, I. G.

    2016-12-01

    Coronal implosions—the convergence motion of plasmas and entrained magnetic field in the corona due to a reduction in magnetic pressure—can help to locate and track sites of magnetic energy release or redistribution during solar flares and eruptions. We report here on the analysis of a well-observed implosion in the form of an arcade contraction associated with a filament eruption, during the C3.5 flare SOL2013-06-19T07:29. A sequence of events including the magnetic flux-rope instability and distortion, followed by a filament eruption and arcade implosion, lead us to conclude that the implosion arises from the transfer of magnetic energy from beneath the arcade as part of the global magnetic instability, rather than due to local magnetic energy dissipation in the flare. The observed net contraction of the imploding loops, which is found also in nonlinear force-free field extrapolations, reflects a permanent reduction of magnetic energy underneath the arcade. This event shows that, in addition to resulting in the expansion or eruption of an overlying field, flux-rope instability can also simultaneously implode an unopened field due to magnetic energy transfer. It demonstrates the “partial opening of the field” scenario, which is one of the ways in 3D to produce a magnetic eruption without violating the Aly-Sturrock hypothesis. In the framework of this observation, we also propose a unification of three main concepts for active region magnetic evolution, namely the metastable eruption model, the implosion conjecture, and the standard “CSHKP” flare model.

  2. Electric Current Filamentation at a Non-potential Magnetic Null-point Due to Pressure Perturbation

    Science.gov (United States)

    Jelínek, P.; Karlický, M.; Murawski, K.

    2015-10-01

    An increase of electric current densities due to filamentation is an important process in any flare. We show that the pressure perturbation, followed by an entropy wave, triggers such a filamentation in the non-potential magnetic null-point. In the two-dimensional (2D), non-potential magnetic null-point, we generate the entropy wave by a negative or positive pressure pulse that is launched initially. Then, we study its evolution under the influence of the gravity field. We solve the full set of 2D time dependent, ideal magnetohydrodynamic equations numerically, making use of the FLASH code. The negative pulse leads to an entropy wave with a plasma density greater than in the ambient atmosphere and thus this wave falls down in the solar atmosphere, attracted by the gravity force. In the case of the positive pressure pulse, the plasma becomes evacuated and the entropy wave propagates upward. However, in both cases, owing to the Rayleigh-Taylor instability, the electric current in a non-potential magnetic null-point is rapidly filamented and at some locations the electric current density is strongly enhanced in comparison to its initial value. Using numerical simulations, we find that entropy waves initiated either by positive or negative pulses result in an increase of electric current densities close to the magnetic null-point and thus the energy accumulated here can be released as nanoflares or even flares.

  3. ELECTRIC CURRENT FILAMENTATION AT A NON-POTENTIAL MAGNETIC NULL-POINT DUE TO PRESSURE PERTURBATION

    Energy Technology Data Exchange (ETDEWEB)

    Jelínek, P. [University of South Bohemia, Faculty of Science, Institute of Physics and Biophysics, Branišovská 10, CZ-37005 České Budějovice (Czech Republic); Karlický, M. [Academy of Sciences of the Czech Republic, v. v. i., Astronomical Institute, Fričova 258, CZ-25165 Ondřejov (Czech Republic); Murawski, K., E-mail: pjelinek@prf.jcu.cz [Maria Curie-Skłodowska University, Institute of Physics, Group of Astrophysics, Radziszewskiego 10, PL-20031 Lublin (Poland)

    2015-10-20

    An increase of electric current densities due to filamentation is an important process in any flare. We show that the pressure perturbation, followed by an entropy wave, triggers such a filamentation in the non-potential magnetic null-point. In the two-dimensional (2D), non-potential magnetic null-point, we generate the entropy wave by a negative or positive pressure pulse that is launched initially. Then, we study its evolution under the influence of the gravity field. We solve the full set of 2D time dependent, ideal magnetohydrodynamic equations numerically, making use of the FLASH code. The negative pulse leads to an entropy wave with a plasma density greater than in the ambient atmosphere and thus this wave falls down in the solar atmosphere, attracted by the gravity force. In the case of the positive pressure pulse, the plasma becomes evacuated and the entropy wave propagates upward. However, in both cases, owing to the Rayleigh–Taylor instability, the electric current in a non-potential magnetic null-point is rapidly filamented and at some locations the electric current density is strongly enhanced in comparison to its initial value. Using numerical simulations, we find that entropy waves initiated either by positive or negative pulses result in an increase of electric current densities close to the magnetic null-point and thus the energy accumulated here can be released as nanoflares or even flares.

  4. Intergalactic Filaments as Isothermal Gas Cylinders

    CERN Document Server

    Harford, A Gayler

    2010-01-01

    Using a cosmological simulation at redshift 5, we find that the baryon-rich cores of intergalactic filaments radiating from galaxies commonly form isothermal gas cylinders. The central gas density is typically about 500 times the cosmic mean total density, and the temperature is typically 1-2 times 10^4 K, just above the Lyman alpha cooling floor. These findings argue that the hydrodynamic properties of the gas are more important than the dark matter in determining the structure. Filaments form a major pipeline for the transport of gas into the centers of galaxies. Since the temperature and ionization state of the gas completely determine the mass per unit length of an isothermal gas cylinder, our findings suggest a constraint upon gas transport into galaxies by this mechanism.

  5. Morgellons disease: a filamentous borrelial dermatitis

    Science.gov (United States)

    Middelveen, Marianne J; Stricker, Raphael B

    2016-01-01

    Morgellons disease (MD) is a dermopathy characterized by multicolored filaments that lie under, are embedded in, or project from skin. Although MD was initially considered to be a delusional disorder, recent studies have demonstrated that the dermopathy is associated with tickborne infection, that the filaments are composed of keratin and collagen, and that they result from proliferation of keratinocytes and fibroblasts in epithelial tissue. Culture, histopathological and molecular evidence of spirochetal infection associated with MD has been presented in several published studies using a variety of techniques. Spirochetes genetically identified as Borrelia burgdorferi sensu stricto predominate as the infective agent in most of the Morgellons skin specimens studied so far. Other species of Borrelia including Borrelia garinii, Borrelia miyamotoi, and Borrelia hermsii have also been detected in skin specimens taken from MD patients. The optimal treatment for MD remains to be determined. PMID:27789971

  6. Morgellons disease: a filamentous borrelial dermatitis.

    Science.gov (United States)

    Middelveen, Marianne J; Stricker, Raphael B

    2016-01-01

    Morgellons disease (MD) is a dermopathy characterized by multicolored filaments that lie under, are embedded in, or project from skin. Although MD was initially considered to be a delusional disorder, recent studies have demonstrated that the dermopathy is associated with tickborne infection, that the filaments are composed of keratin and collagen, and that they result from proliferation of keratinocytes and fibroblasts in epithelial tissue. Culture, histopathological and molecular evidence of spirochetal infection associated with MD has been presented in several published studies using a variety of techniques. Spirochetes genetically identified as Borrelia burgdorferi sensu stricto predominate as the infective agent in most of the Morgellons skin specimens studied so far. Other species of Borrelia including Borrelia garinii, Borrelia miyamotoi, and Borrelia hermsii have also been detected in skin specimens taken from MD patients. The optimal treatment for MD remains to be determined.

  7. Merging and energy exchange between optical filaments

    Energy Technology Data Exchange (ETDEWEB)

    Georgieva, D. A., E-mail: dgeorgieva@tu-sofia.bg [Faculty of Applied Mathematics and Computer Science, Technical University of Sofia, 8 Kliment Ohridski Blvd., 1000 Sofia (Bulgaria); Kovachev, L. M. [Institute of Electronics, Bulgarian Academy of Sciences, 72 Tzarigradcko Chaussee Blvd., 1784 Sofia (Bulgaria)

    2015-10-28

    We investigate nonlinear interaction between collinear femtosecond laser pulses with power slightly above the critical for self-focusing P{sub cr} trough the processes of cross-phase modulation (CPM) and degenerate four-photon parametric mixing (FPPM). When there is no initial phase difference between the pulses we observe attraction between pulses due to CPM. The final result is merging between the pulses in a single filament with higher power. By method of moments it is found that the attraction depends on the distance between the pulses and has potential character. In the second case we study energy exchange between filaments. This process is described through FPPM scheme and requests initial phase difference between the waves.

  8. Laser filamentation mathematical methods and models

    CERN Document Server

    Lorin, Emmanuel; Moloney, Jerome

    2016-01-01

    This book is focused on the nonlinear theoretical and mathematical problems associated with ultrafast intense laser pulse propagation in gases and in particular, in air. With the aim of understanding the physics of filamentation in gases, solids, the atmosphere, and even biological tissue, specialists in nonlinear optics and filamentation from both physics and mathematics attempt to rigorously derive and analyze relevant non-perturbative models. Modern laser technology allows the generation of ultrafast (few cycle) laser pulses, with intensities exceeding the internal electric field in atoms and molecules (E=5x109 V/cm or intensity I = 3.5 x 1016 Watts/cm2 ). The interaction of such pulses with atoms and molecules leads to new, highly nonlinear nonperturbative regimes, where new physical phenomena, such as High Harmonic Generation (HHG), occur, and from which the shortest (attosecond - the natural time scale of the electron) pulses have been created. One of the major experimental discoveries in this nonlinear...

  9. Kinetic Alfven wave turbulence in space plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Sharma, R.P. [Plasma Simulation Laboratory, Centre for Energy Studies, Indian Institute of Technology, Delhi-110016, New Delhi (India); Kumar, Sachin, E-mail: dynamicalfven@gmail.co [Plasma Simulation Laboratory, Centre for Energy Studies, Indian Institute of Technology, Delhi-110016, New Delhi (India)

    2010-07-26

    This work presents the derivation of nonlinear coupled equations for the evolution of solar wind turbulence. These equations are governing the coupled dynamics of kinetic Alfven wave and ion acoustic wave. Numerical simulation of these equations is also presented. The ponderomotive nonlinearity is incorporated in the wave dynamics. Filamentation of kinetic Alfven wave and the turbulent spectra are presented in intermediate-{beta} plasmas at heliocentric distances (0.3 AU{<=}r<1.0 AU). The growing filaments and steeper turbulent spectra (of power law k{sup -S}, 5/3{<=}S{<=}3) can be responsible for plasma heating and particle acceleration in solar wind.

  10. In situ ellipsometric study of surface immobilization of flagellar filaments

    Energy Technology Data Exchange (ETDEWEB)

    Kurunczi, S., E-mail: kurunczi@mfa.kfki.hu [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Nemeth, A.; Huelber, T. [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Kozma, P. [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Department of Nanotechnology, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, Egyetem u. 10, Veszprem, H-8200 (Hungary); Petrik, P. [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Jankovics, H. [Department of Nanotechnology, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, Egyetem u. 10, Veszprem, H-8200 (Hungary); Sebestyen, A. [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Department of Nanotechnology, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, Egyetem u. 10, Veszprem, H-8200 (Hungary); Vonderviszt, F. [Department of Photonics, Research Institute for Technical Physics and Materials Science, H-1121, Konkoly Thege Miklos ut 29-33, Budapest (Hungary); Department of Nanotechnology, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, Egyetem u. 10, Veszprem, H-8200 (Hungary); Institute of Enzymology, Karolina ut 29-33, Budapest, H-1113 (Hungary); and others

    2010-10-15

    Protein filaments composed of thousands of subunits are promising candidates as sensing elements in biosensors. In this work in situ spectroscopic ellipsometry is applied to monitor the surface immobilization of flagellar filaments. This study is the first step towards the development of layers of filamentous receptors for sensor applications. Surface activation is performed using silanization and a subsequent glutaraldehyde crosslinking. Structure of the flagellar filament layers immobilized on activated and non-activated Si wafer substrates is determined using a two-layer effective medium model that accounted for the vertical density distribution of flagellar filaments with lengths of 300-1500 nm bound to the surface. The formation of the first interface layer can be explained by the multipoint covalent attachment of the filaments, while the second layer is mainly composed of tail pinned filaments floating upwards with the free parts. As confirmed by atomic force microscopy, covalent immobilization resulted in an increased surface density compared to absorption.

  11. Motion of current filaments in avalanching PIN diodes

    Science.gov (United States)

    Xingrong, Ren; Changchun, Chai; Zhenyang, Ma; Yintang, Yang; Liping, Qiao; Chunlei, Shi; Lihua, Ren

    2013-04-01

    The motion of current filaments in avalanching PIN diodes has been investigated in this paper by 2D transient numerical simulations. The simulation results show that the filament can move along the length of the PIN diode back and forth when the self-heating effect is considered. The voltage waveform varies periodically due to the motion of the filament. The filament motion is driven by the temperature gradient in the filament due to the negative temperature dependence of the impact ionization rates. Contrary to the traditional understanding that current filamentation is a potential cause of thermal destruction, it is shown in this paper that the thermally-driven motion of current filaments leads to the homogenization of temperature in the diode and is expected to have a positive influence on the failure threshold of the PIN diode.

  12. The Dark Matter filament between Abell 222/223

    Science.gov (United States)

    Dietrich, Jörg P.; Werner, Norbert; Clowe, Douglas; Finoguenov, Alexis; Kitching, Tom; Miller, Lance; Simionescu, Aurora

    2016-10-01

    Weak lensing detections and measurements of filaments have been elusive for a long time. The reason is that the low density contrast of filaments generally pushes the weak lensing signal to unobservably low scales. To nevertheless map the dark matter in filaments exquisite data and unusual systems are necessary. SuprimeCam observations of the supercluster system Abell 222/223 provided the required combination of excellent seeing images and a fortuitous alignment of the filament with the line-of-sight. This boosted the lensing signal to a detectable level and led to the first weak lensing mass measurement of a large-scale structure filament. The filament connecting Abell 222 and Abell 223 is now the only one traced by the galaxy distribution, dark matter, and X-ray emission from the hottest phase of the warm-hot intergalactic medium. The combination of these data allows us to put the first constraints on the hot gas fraction in filaments.

  13. Topological Aspect of Knotted Vortex Filaments in Excitable Media

    Institute of Scientific and Technical Information of China (English)

    REN Ji-Rong; ZHU Tao; DUAN Yi-Shi

    2008-01-01

    Scroll waves exist ubiquitously in three-dimensional excitable media.The rotation centre can be regarded as a topological object called the vortex filament.In three-dimensional space,the vortex filaments usually form closed loops,and can be even linked and knotted.We give a rigorous topological description of knotted vortex filaments.By using the Φ-mapping topological current theory,we rewrite the topological current form of the charge density of vortex filaments,and using this topological current we reveal that the Hopf invariant of vortex filaments is just the sum of the linking and self-linking numbers of the knotted vortex filaments.We think that the precise expression of the Hopf invariant may imply a new topological constraint on knotted vortex filaments.

  14. Formation of magnetic filaments: A kinetic study

    Science.gov (United States)

    Martínez-Pedrero, F.; Tirado-Miranda, M.; Schmitt, A.; Callejas-Fernández, J.

    2007-07-01

    In order to form magnetic filaments or chains, aqueous suspensions of superparamagnetic colloidal particles were aggregated under the action of an external magnetic field in the presence of different amounts of an indifferent 1:1 electrolyte (KBr). This allowed the influence of the anisotropic magnetic and isotropic electrostatic interactions on the aggregation behavior of these electric double-layered magnetic particles to be studied. Dynamic light scattering was used for monitoring the average diffusion coefficient of the magnetic filaments formed. Hydrodynamic equations were employed for obtaining the average chain lengths from the experimental mean diffusion coefficients. The results show that, for the same exposure time to the magnetic field, the average filament size is monotonously related to the amount of electrolyte added. The chain growth behavior was found to follow a power law with a similar exponent for all electrolyte concentrations used in this work. The time evolution of the average filament size can be rescaled such that all the curves collapse on a single master curve. Since the electrolyte added does not have any effect on the scaling behavior, the mechanism of aggregation seems to be completely controlled by the dipolar interaction. However, electrolyte addition not only controls the range of the total interaction between the particles, but also enhances the growth rate of the aggregation process. Taking into account the anisotropic character of these aggregation processes we propose a kernel that depends explicitly on the range of the dipolar interaction. The corresponding solutions of the Smoluchowski equation combined with theoretical models for the diffusion and light scattering by rigid rods reproduce the measured time evolution of the average perpendicular aggregate diffusion coefficient quite satisfactorily.

  15. Cold Milky Way HI Gas in Filaments

    Science.gov (United States)

    Kalberla, P. M. W.; Kerp, J.; Haud, U.; Winkel, B.; Ben Bekhti, N.; Flöer, L.; Lenz, D.

    2016-04-01

    We investigate data from the Galactic Effelsberg-Bonn H i Survey, supplemented with data from the third release of the Galactic All Sky Survey (GASS III) observed at Parkes. We explore the all-sky distribution of the local Galactic H i gas with | {v}{{LSR}}| \\lt 25 km s-1 on angular scales of 11‧-16‧. Unsharp masking is applied to extract small-scale features. We find cold filaments that are aligned with polarized dust emission and conclude that the cold neutral medium (CNM) is mostly organized in sheets that are, because of projection effects, observed as filaments. These filaments are associated with dust ridges, aligned with the magnetic field measured on the structures by Planck at 353 GHz. The CNM above latitudes | b| \\gt 20^\\circ is described by a log-normal distribution, with a median Doppler temperature TD = 223 K, derived from observed line widths that include turbulent contributions. The median neutral hydrogen (H i) column density is NH i ≃ 1019.1 cm-2. These CNM structures are embedded within a warm neutral medium with NH i ≃ 1020 cm-2. Assuming an average distance of 100 pc, we derive for the CNM sheets a thickness of ≲0.3 pc. Adopting a magnetic field strength of Btot = (6.0 ± 1.8) μG, proposed by Heiles & Troland, and assuming that the CNM filaments are confined by magnetic pressure, we estimate a thickness of 0.09 pc. Correspondingly, the median volume density is in the range 14 ≲ n ≲ 47 cm-3. The authors thank the Deutsche Forschungsgemeinschaft (DFG) for support under grant numbers KE757/11-1, KE757/7-3, KE757/7-2, KE757/7-1, and BE4823/1-1.

  16. [Elimination of microscopic filamentous fungi with disinfectants].

    Science.gov (United States)

    Laciaková, A; Laciak, V

    1994-01-01

    The antifungal effectivity of three single-component (Persteril, Septonex, Glutaraldehyd) and of three combined (Persteril+Septonex, Pesteril+Glutaraldehyd, Glutaraldehyd+Septonex) commercially available disinfectants was monitored by the diffuse method on five fen of the microscopic filamentous fungi Aspergillus alternata, Aspergillus niger, Mucor fragillis, Fusarium moniliforme, Penicillium glabrum. The highest antifungal activity was observed in 2% Persteril while 2% Persteril + 1% Septonex were the most effective among the combined disinfectants. M. fragilis was the most resistant strain.

  17. On viscoelastic instability in polymeric filaments

    DEFF Research Database (Denmark)

    Rasmussen, Henrik Koblitz; Hassager, Ole

    1999-01-01

    The 3D Lagrangian Integral Method is used to simulate the effects of surface tension on the viscoelastic end-plate instability, occuring in the rapid extension of some polymeric filaments between parallel plates. It is shovn that the surface tension delays the onset of the instability. Furthermore...... it is demonstrated that surface tension plays a key role in the selection of the most unstable mode...

  18. The tidal filament of NGC 4660

    CERN Document Server

    Kemp, S N; Marquez-Lugo, R A; Zepeda-Garcia, D; Franco-Hernandez, R; Nigoche-Netro, A; Ramos-Larios, G; Navarro, S G; Corral, L J

    2016-01-01

    NGC 4660, in the Virgo cluster, is a well-studied elliptical galaxy which has a strong disk component (D/T about 0.2-0.3). The central regions including the disk component have stellar populations with ages about 12-13 Gyr from SAURON studies. However we report the discovery of a long narrow tidal filament associated with the galaxy in deep co-added Schmidt plate images and deep CCD frames, implying that the galaxy has undergone a tidal interaction and merger within the last few Gyr. The relative narrowness of the filament implies a wet merger with at least one spiral galaxy involved, but the current state of the system has little evidence for this. However a 2-component photometric fit using GALFIT shows much bluer B-V colours for the disk component than for the elliptical component, which may represent a residual trace of enhanced star formation in the disk caused by the interaction 1-2 Gyr ago. There are brighter concentrations within the filament which resemble Tidal Dwarf Galaxies, although they are at l...

  19. Mechanical Properties of Intermediate Filament Proteins.

    Science.gov (United States)

    Charrier, Elisabeth E; Janmey, Paul A

    2016-01-01

    Purified intermediate filament (IF) proteins can be reassembled in vitro to produce polymers closely resembling those found in cells, and these filaments form viscoelastic gels. The cross-links holding IFs together in the network include specific bonds between polypeptides extending from the filament surface and ionic interactions mediated by divalent cations. IF networks exhibit striking nonlinear elasticity with stiffness, as quantified by shear modulus, increasing an order of magnitude as the networks are deformed to large strains resembling those that soft tissues undergo in vivo. Individual IFs can be stretched to more than two or three times their resting length without breaking. At least 10 different rheometric methods have been used to quantify the viscoelasticity of IF networks over a wide range of timescales and strain magnitudes. The mechanical roles of different classes of cytoplasmic IFs on mesenchymal and epithelial cells in culture have also been studied by an even wider range of microrheological methods. These studies have documented the effects on cell mechanics when IFs are genetically or pharmacologically disrupted or when normal or mutant IF proteins are exogenously expressed in cells. Consistent with in vitro rheology, the mechanical role of IFs is more apparent as cells are subjected to larger and more frequent deformations.

  20. Oscillating Filaments. I. Oscillation and Geometrical Fragmentation

    Science.gov (United States)

    Gritschneder, Matthias; Heigl, Stefan; Burkert, Andreas

    2017-01-01

    We study the stability of filaments in equilibrium between gravity and internal as well as external pressure using the grid-based AMR code RAMSES. A homogeneous, straight cylinder below a critical line mass is marginally stable. However, if the cylinder is bent, such as with a slight sinusoidal perturbation, an otherwise stable configuration starts to oscillate, is triggered into fragmentation, and collapses. This previously unstudied behavior allows a filament to fragment at any given scale, as long as it has slight bends. We call this process “geometrical fragmentation.” In our realization, the spacing between the cores matches the wavelength of the sinusoidal perturbation, whereas up to now, filaments were thought to be only fragmenting on the characteristic scale set by the mass-to-line ratio. Using first principles, we derive the oscillation period as well as the collapse timescale analytically. To enable a direct comparison with observations, we study the line-of-sight velocity for different inclinations. We show that the overall oscillation pattern can hide the infall signature of cores.

  1. A first approach to filament dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Silva, P E S; De Abreu, F Vistulo; Dias, R G [Department of Physics, University of Aveiro (Portugal); Simoes, R, E-mail: fva@ua.p [I3N-Institute for Nanostructures, Nanomodelling and Nanofabrication (Portugal)

    2010-11-15

    Modelling elastic filament dynamics is a topic of high interest due to the wide range of applications. However, it has reached a high level of complexity in the literature, making it unaccessible to a beginner. In this paper we explain the main steps involved in the computational modelling of the dynamics of an elastic filament. We first derive equations governing the dynamics of an elastic lament suitable for a computer simulation implementation. The derivation starts from the relation between forces and potential energy in conservative systems in order to derive the equation of motion of any bead in the filament. Only two-dimensional movements are considered, but extensions to three dimensions can follow similar lines. Suggestions for computer implementations are provided in Matlab as well as an example of application related to the generation of musical sounds. This example allows a critical analysis of the numerical results obtained using a cross-disciplinary perspective. Since derivations start from basic physics equations, use simple calculus and computational implementations are straightforward, this paper proposes a different approach to introduce simple molecular dynamics simulations or animations of real systems in undergraduate elasticity or computer modelling courses.

  2. Modelling the chemistry of star forming filaments

    CERN Document Server

    Seifried, D

    2015-01-01

    We present simulations of star forming filaments incorporating - to our knowledge - the largest chemical network used to date on-the-fly in a 3D-MHD simulation. The network contains 37 chemical species and about 300 selected reaction rates. For this we use the newly developed package KROME (Grassi et al. 2014). We combine the KROME package with an algorithm which allows us to calculate the column density and attenuation of the interstellar radiation field necessary to properly model heating and ionisation rates. Our results demonstrate the feasibility of using such a complex chemical network in 3D-MHD simulations on modern supercomputers. We perform simulations with different strengths of the interstellar radiation field and the cosmic ray ionisation rate. We find that towards the centre of the filaments there is gradual conversion of hydrogen from H^+ over H to H_2 as well as of C^+ over C to CO. Moreover, we find a decrease of the dust temperature towards the centre of the filaments in agreement with recent...

  3. Microwave Negative Bursts as Indications of Reconnection between Eruptive Filaments and Large-Scale Coronal Magnetic Environment

    CERN Document Server

    Grechnev, V; Uralov, A; Chertok, I; Kochanov, A

    2013-01-01

    Low-temperature plasma ejected in solar eruptions can screen active regions as well as quiet solar areas. Absorption phenomena can be observed in microwaves as 'negative bursts' and in different spectral domains. We analyze two very different recent events with such phenomena and present an updated systematic view of solar events associated with negative bursts. Related filament eruptions can be normal, without essential changes of shape and magnetic configuration, and 'anomalous'. The latter are characterized by disintegration of an eruptive filament and dispersal of its remnants as a cloud over a large part of solar disk. Such phenomena can be observed as giant depressions in the He II 304 A line. One of possible scenarios for an anomalous eruption is proposed in terms of reconnection of filament's internal magnetic fields with external large-scale coronal surrounding.

  4. THE FAST FILAMENT ERUPTION LEADING TO THE X-FLARE ON 2014 MARCH 29

    Energy Technology Data Exchange (ETDEWEB)

    Kleint, Lucia; Battaglia, Marina; Krucker, Säm [University of Applied Sciences and Arts Northwestern Switzerland, Bahnhofstrasse 6, 5210 Windisch (Switzerland); Reardon, Kevin [National Solar Observatory, Sacramento Peak, P.O. Box 62, Sunspot, NM 88349 (United States); Dalda, Alberto Sainz [Stanford-Lockheed Institute for Space Research, Stanford University, HEPL, 466 Via Ortega, Stanford, CA 94305 (United States); Young, Peter R. [College of Science, George Mason University, 4400 University Drive, Fairfax, VA 22030 (United States)

    2015-06-10

    We investigate the sequence of events leading to the solar X1 flare SOL2014-03-29T17:48. Because of the unprecedented joint observations of an X-flare with the ground-based Dunn Solar Telescope and the spacecraft IRIS, Hinode, RHESSI, STEREO, and the Solar Dynamics Observatory, we can sample many solar layers from the photosphere to the corona. A filament eruption was observed above a region of previous flux emergence, which possibly led to a change in magnetic field configuration, causing the X-flare. This was concluded from the timing and location of the hard X-ray emission, which started to increase slightly less than a minute after the filament accelerated. The filament showed Doppler velocities of ∼2–5 km s{sup −1} at chromospheric temperatures for at least one hour before the flare occurred, mostly blueshifts, but also redshifts near its footpoints. Fifteen minutes before the flare, its chromospheric Doppler shifts increased to ∼6–10 km s{sup −1} and plasma heating could be observed before it lifted off with at least 600 km s{sup −1} as seen in IRIS data. Compared to previous studies, this acceleration (∼3–5 km s{sup −2}) is very fast, while the velocities are in the common range for coronal mass ejections. An interesting feature was a low-lying twisted second filament near the erupting filament, which did not seem to participate in the eruption. After the flare ribbons started on each of the second filament’s sides, it seems to have untangled and vanished during the flare. These observations are some of the highest resolution data of an X-class flare to date and reveal some small-scale features yet to be explained.

  5. Visible supercontinuum radiation of light bullets in the femtosecond filamentation of IR pulses in fused silica

    Science.gov (United States)

    Chekalin, S. V.; Kompanets, V. O.; Dokukina, A. E.; Dormidonov, A. E.; Smetanina, E. O.; Kandidov, V. P.

    2015-05-01

    We report experimental and theoretical investigations of visible supercontinuum generation in the formation of light bullets in a filament produced by IR pulses. In the filamentation of a 1700 - 2200 nm pulse in fused silica, bright tracks are recorded resulting from the recombination glow of carriers in the laser plasma produced by a sequence of light bullets and from the scattering in silica of the visible supercontinuum generated by the light bullets. It is found that the formation of a light bullet is attended with an outburst of a certain portion of supercontinuum energy in the visible range. The energy outburst is the same for all bullets in the sequence and becomes smaller with increasing pulse wavelength.

  6. The exocyst complex: delivery hub for morphogenesis and pathogenesis in filamentous fungi.

    Science.gov (United States)

    Chen, Xiaofeng; Ebbole, Daniel J; Wang, Zonghua

    2015-12-01

    Regulated by several small GTPases, the octameric exocyst complex directs the docking and tethering of exocytic vesicles to the destined plasma membrane sites, providing the precise spatiotemporal control of exocytosis. Although the exocyst components are well conserved among various fungal species, the mechanisms for the regulation of its assembly and activity are diverse. Exocytosis is crucial for the generation of cell polarity as well as the delivery of effector proteins in filamentous fungi, and thus plays an important role for fungal morphogenesis and pathogenicity on plant hosts. This review focuses on current findings about the roles of the exocyst complex in the morphogenesis and pathogenesis of filamentous fungi. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. NLTE modeling of a small active region filament observed with the VTT

    Science.gov (United States)

    Schwartz, P.; Balthasar, H.; Kuckein, C.; Koza, J.; Gömöry, P.; Rybák, J.; Heinzel, P.; Kučera, A.

    2016-11-01

    An active region mini-discretionary-filament was observed with the Vacuum Tower Telescope (VTT) in Tenerife simultaneously in the He I infrared triplet using the Tenerife Infrared Polarimeter 1 (TIP 1), in Hα with the TESOS Fabry-Pérot interferometer, and in Ca II 8542 Å with the VTT spectrograph. The spectropolarimetric data were inverted using the HAZEL code and Hα profiles were modelled by solving a NLTE radiative transfer in a simple isobaric and isothermal 2D slab irradiated both from its bottom and sides from the solar surface. It was found that the mini-discretionary-filament is composed of horizontal fluxtubes, along which the cool plasma of T˜10 000 K can flow with very large, even supersonic, velocities.

  8. Patterns of molecular motors that guide and sort filaments.

    Science.gov (United States)

    Rupp, Beat; Nédélec, François

    2012-11-21

    Molecular motors can be immobilized to transport filaments and loads that are attached to these filaments inside a nano-device. However, if motors are distributed uniformly over a flat surface, the motility is undirected, and the filaments move equally in all directions. For many applications it is important to control the direction in which the filaments move, and two strategies have been explored to achieve this: applying external forces and confining the filaments inside channels. In this article, we discuss a third strategy in which the topography of the sample remains flat, but the motors are distributed non-uniformly over the surface. Systems of filaments and patterned molecular motors were simulated using a stochastic engine that included Brownian motion and filament bending elasticity. Using an evolutionary algorithm, patterns were optimized for their capacity to precisely control the paths of the filaments. We identified patterns of motors that could either direct the filaments in a particular direction, or separate short and long filaments. These functionalities already exceed what has been achieved with confinement. The patterns are composed of one or two types of motors positioned in lines or along arcs and should be easy to manufacture. Finally, these patterns can be easily combined into larger designs, allowing one to precisely control the motion of microscopic objects inside a device.

  9. Connectin filaments in stretched skinned fibers of frog skeletal muscle

    Science.gov (United States)

    1984-01-01

    Indirect immunofluorescence microscopy of highly stretched skinned frog semi-tendinous muscle fibers revealed that connectin, an elastic protein of muscle, is located in the gap between actin and myosin filaments and also in the region of myosin filaments except in their centers. Electron microscopic observations showed that there were easily recognizable filaments extending from the myosin filaments to the I band region and to Z lines in the myofibrils treated with antiserum against connectin. In thin sections prepared with tannic acid, very thin filaments connected myosin filaments to actin filaments. These filaments were also observed in myofibrils extracted with a modified Hasselbach-Schneider solution (0.6 M KCl, 0.1 M phosphate buffer, pH 6.5, 2 mM ATP, 2 mM MgCl2, and 1 mM EGTA) and with 0.6 M Kl. SDS PAGE revealed that connectin (also called titin) remained in extracted myofibrils. We suggest that connectin filaments play an important role in the generation of tension upon passive stretch. A scheme of the cytoskeletal structure of myofibrils of vertebrate skeletal muscle is presented on the basis of our present information of connectin and intermediate filaments. PMID:6384237

  10. Degradation of thin tungsten filaments at high temperature in HWCVD

    Energy Technology Data Exchange (ETDEWEB)

    Frigeri, P.A., E-mail: pfrigeri@phys.ethz.ch; Nos, O.; Bertomeu, J.

    2015-01-30

    The degradation of the filaments is usually studied by checking the silicidation or carbonization status of the refractory metal used as catalysts, and their effects on the structural stability of the filaments. In this paper, it will be shown that the catalytic stability of a filament heated at high temperature is much shorter than its structural lifetime. The electrical resistance of a thin tungsten filament and the deposition rate of the deposited thin film have been monitored during the filament aging. It has been found that the deposition rate drops drastically once the quantity of dissolved silicon in the tungsten reaches the solubility limit and the silicides start precipitating. This manuscript concludes that the catalytic stability is only guaranteed for a short time and that for sufficiently thick filaments it does not depend on the filament radius. - Highlights: • A model for the electrical resistance of a tungsten filament during aging is presented. • Catalytic activity of the filament drops when W5Si3 precipitation takes place at its surface. • The catalytic stability of the filament does not depend on its radius in most practical situations.

  11. Tropomyosin - master regulator of actin filament function in the cytoskeleton.

    Science.gov (United States)

    Gunning, Peter W; Hardeman, Edna C; Lappalainen, Pekka; Mulvihill, Daniel P

    2015-08-15

    Tropomyosin (Tpm) isoforms are the master regulators of the functions of individual actin filaments in fungi and metazoans. Tpms are coiled-coil parallel dimers that form a head-to-tail polymer along the length of actin filaments. Yeast only has two Tpm isoforms, whereas mammals have over 40. Each cytoskeletal actin filament contains a homopolymer of Tpm homodimers, resulting in a filament of uniform Tpm composition along its length. Evidence for this 'master regulator' role is based on four core sets of observation. First, spatially and functionally distinct actin filaments contain different Tpm isoforms, and recent data suggest that members of the formin family of actin filament nucleators can specify which Tpm isoform is added to the growing actin filament. Second, Tpms regulate whole-organism physiology in terms of morphogenesis, cell proliferation, vesicle trafficking, biomechanics, glucose metabolism and organ size in an isoform-specific manner. Third, Tpms achieve these functional outputs by regulating the interaction of actin filaments with myosin motors and actin-binding proteins in an isoform-specific manner. Last, the assembly of complex structures, such as stress fibers and podosomes involves the collaboration of multiple types of actin filament specified by their Tpm composition. This allows the cell to specify actin filament function in time and space by simply specifying their Tpm isoform composition.

  12. Effects of filamentation instability on the divergence of relativistic electrons driven by ultraintense laser pulses

    Science.gov (United States)

    Yang, X. H.; Zhuo, H. B.; Xu, H.; Ge, Z. Y.; Shao, F. Q.; Borghesi, M.; Ma, Y. Y.

    2016-10-01

    Generation of relativistic electron (RE) beams during ultraintense laser pulse interaction with plasma targets is studied by collisional particle-in-cell simulations. A strong magnetic field with a transverse scale length of several local plasma skin depths, associated with RE current propagation in the target, is generated by filamentation instability in collisional plasmas, inducing a great enhancement of the divergence of REs compared to that of collisionless cases. Such an effect is increased with laser intensity and target charge state, suggesting that the RE divergence might be improved by using low-Z materials under appropriate laser intensities in future fast ignition experiments and in other applications of laser-driven electron beams.

  13. Two-color interferometer for the study of laser filamentation triggered electric discharges in air

    CERN Document Server

    Point, Guillaume; Arantchouk, Leonid; Carbonnel, Jérôme; Prade, Bernard; Mysyrowicz, André; Houard, Aurélien

    2014-01-01

    We present a space and time resolved interferometric plasma diagnostic for use on plasmas where neutral-bound electron contribution to the refractive index cannot be neglected. By recording simultaneously the plasma optical index at 532 and 1064 nm, we are able to extract independently the neutral and free electron density profiles. We report a phase resolution of 30 mrad, corresponding to a maximum resolution on the order of $4\\times10^{23}~\\mathrm{m}^{-3}$ for the electron density, and of $10^{24} ~ \\mathrm{m}^{-3}$ for the neutral density. The interferometer is demonstrated on centimeter-scale sparks triggered by laser filamentation in air with typical currents of a few tens of A.

  14. Nonlinearly enhanced linear absorption under filamentation in mid-infrared (Conference Presentation)

    Science.gov (United States)

    Shipilo, Daniil; Panov, Nicolay; Andreeva, Vera; Kosareva, Olga G.; Saletski, Alexander M.; Xu, Huai-Liang; Polynkin, Pavel

    2017-05-01

    the filament is formed. In the developed filament all the partial losses due to plasma, harmonic generation and absorption on vibrational lines grow up rapidly with the propagation distance, and the absorption on vibrational lines overwhelms all the rest ones. Indeed the new mechanism is revealed - the linear absorption is enhanced by the nonlinear spectral broadening. Thus, the nonlinearly enhanced linear absorption (NELA) is formed. The rotational transitions are estimated to consume as much energy as the free electron generation mechanism [5], which is less than NELA for 3.9-µm filament. In conclusion, in the 3.9-µm filament the excitations of molecular absorption lines are estimated to provide the major optical losses in the atmosphere as compared with plasma and high-frequency conversion. [1] A. V. Mitrofanov et al., Sci. Rep. 5, 8368 (2015). [2] P. Panagiotopoulos et al., Nat. Photonics 9, 543 (2015). [3] R. J. Mathar, Appl. Opt. 43, 928 (2004). [4] N. A. Panov et al., Phys. Rev. A 94, 041801 (2016). [5] S. Zahedpour et al., Phys. Rev. Lett. 112, 143601 (2014).

  15. Heterocyst placement strategies to maximize growth of cyanobacterial filaments

    CERN Document Server

    Brown, Aidan I

    2012-01-01

    Under conditions of limited fixed-nitrogen, some filamentous cyanobacteria develop a regular pattern of heterocyst cells that fix nitrogen for the remaining vegetative cells. We examine three different heterocyst placement strategies by quantitatively modelling filament growth while varying both external fixed-nitrogen and leakage from the filament. We find that there is an optimum heterocyst frequency which maximizes the growth rate of the filament; the optimum frequency decreases as the external fixed-nitrogen concentration increases but increases as the leakage increases. In the presence of leakage, filaments implementing a local heterocyst placement strategy grow significantly faster than filaments implementing random heterocyst placement strategies. With no extracellular fixed-nitrogen, consistent with recent experimental studies of Anabaena sp. PCC 7120, the modelled heterocyst spacing distribution using our local heterocyst placement strategy is qualitatively similar to experimentally observed patterns...

  16. Hamiltonian Dynamics of Protein Filament Formation.

    Science.gov (United States)

    Michaels, Thomas C T; Cohen, Samuel I A; Vendruscolo, Michele; Dobson, Christopher M; Knowles, Tuomas P J

    2016-01-22

    We establish the Hamiltonian structure of the rate equations describing the formation of protein filaments. We then show that this formalism provides a unified view of the behavior of a range of biological self-assembling systems as diverse as actin, prions, and amyloidogenic polypeptides. We further demonstrate that the time-translation symmetry of the resulting Hamiltonian leads to previously unsuggested conservation laws that connect the number and mass concentrations of fibrils and allow linear growth phenomena to be equated with autocatalytic growth processes. We finally show how these results reveal simple rate laws that provide the basis for interpreting experimental data in terms of specific mechanisms controlling the proliferation of fibrils.

  17. Intermediate filaments: from cell architecture to nanomechanics.

    Science.gov (United States)

    Herrmann, Harald; Bär, Harald; Kreplak, Laurent; Strelkov, Sergei V; Aebi, Ueli

    2007-07-01

    Intermediate filaments (IFs) constitute a major structural element of animal cells. They build two distinct systems, one in the nucleus and one in the cytoplasm. In both cases, their major function is assumed to be that of a mechanical stress absorber and an integrating device for the entire cytoskeleton. In line with this, recent disease mutations in human IF proteins indicate that the nanomechanical properties of cell-type-specific IFs are central to the pathogenesis of diseases as diverse as muscular dystrophy and premature ageing. However, the analysis of these various diseases suggests that IFs also have an important role in cell-type-specific physiological functions.

  18. Semiflexible biopolymers: Microrheology and single filament condensation

    Science.gov (United States)

    Schnurr, Bernhard

    Polymers and their elementary subunits, called monomers, come in an immense variety of structures and sizes, and are of great importance for their material properties as well as a multitude of biological functions. The emphasis here is on semiflexible polymers, which are identified by their intermediate degree of stiffness. Their individual as well as their collective properties when assembled into entangled networks is a topic of great interest to polymer physics, materials science, and biology. Some of the most important semiflexible polymers are biopolymers, with such prominent examples as DNA, F-actin, and microtubules. Their functions range from their use as structural elements in the cytoskeleton of most plant and animal cells, to their role as transport tracks for molecular motors, and the storage of genetic information in their linear sequence. The two parts of this experimental and theoretical thesis address single filament aspects as well as network properties of solutions of semiflexible polymers. In the first part, we describe an optical technique for measuring the bulk properties of soft materials at the local scale. We apply it to a solution of entangled, filamentous actin, a particularly difficult material to characterize with conventional techniques. Beyond a description of measurements and apparatus, we also discuss, from a theoretical point of view, the interpretation and fundamental limitations of this and other microrheological techniques. In the second part, we describe the condensation dynamics of a single, semiflexible filament, induced by changing solvent conditions. A biologically important example of this phenomenon is the condensation of DNA into toroidal structures, which occurs, for instance, in viral capsids. Our observations of a molecular simulation motivate an unexpected pathway of collapse via a series of metastable intermediates we call ``racquet'' states. The analysis of the conformational energies of these structures in the

  19. Filament winding cylinders. I - Process model

    Science.gov (United States)

    Lee, Soo-Yong; Springer, George S.

    1990-01-01

    A model was developed which describes the filament winding process of composite cylinders. The model relates the significant process variables such as winding speed, fiber tension, and applied temperature to the thermal, chemical and mechanical behavior of the composite cylinder and the mandrel. Based on the model, a user friendly code was written which can be used to calculate (1) the temperature in the cylinder and the mandrel, (2) the degree of cure and viscosity in the cylinder, (3) the fiber tensions and fiber positions, (4) the stresses and strains in the cylinder and in the mandrel, and (5) the void diameters in the cylinder.

  20. Filamentous bacteria transport electrons over centimetre distances

    DEFF Research Database (Denmark)

    Pfeffer, Christian; Larsen, Steffen; Song, Jie

    2012-01-01

    across centimetre-wide zones. Here we present evidence that the native conductors are long, filamentous bacteria. They abounded in sediment zones with electric currents and along their length they contained strings with distinct properties in accordance with a function as electron transporters. Living......Oxygen consumption in marine sediments is often coupled to the oxidation of sulphide generated by degradation of organic matter in deeper, oxygen-free layers. Geochemical observations have shown that this coupling can be mediated by electric currents carried by unidentified electron transporters......, electrical cables add a new dimension to the understanding of interactions in nature and may find use in technology development....

  1. Numerical simulations of a filament in a flowing soap film

    Science.gov (United States)

    Farnell, D. J. J.; David, T.; Barton, D. C.

    2004-01-01

    Experiments concerning the properties of soap films have recently been carried out and these systems have been proposed as experimental versions of theoretical two-dimensional liquids. A silk filament introduced into a flowing soap film, was seen to demonstrate various stable modes, and these were, namely, a mode in which the filament oscillates and one in which the filament is stationary and aligns with the flow of the liquid. The system could be forced from the oscillatory mode into the non- oscillatory mode by varying the length of the filament. In this article we use numerical and computational techniques in order to simulate the strongly coupled behaviour of the filament and the fluid. Preliminary results are presented for the specific case in which the filament is seen to oscillate continuously for the duration of our simulation. We also find that the filament oscillations are strongly suppressed when we reduce the effective length of the filament. We believe that these results are reminiscent of the different oscillatory and non-oscillatory modes observed in experiment. The numerical solutions show that, in contrast to experiment, vortices are created at the leading edge of the filament and are preferentially grown in the curvature of the filament and are eventually released from the trailing edge of the filament. In a similar manner to oscillating hydrofoils, it seems that the oscillating filaments are in a minimal energy state, extracting sufficient energy from the fluid to oscillate. In comparing numerical and experimental results it is possible that the soap film does have an effect on the fluid flow especially in the boundary layer where surface tension forces are large.

  2. Characterization of osmotically induced filaments of Salmonella enterica.

    Science.gov (United States)

    Pratt, Zachary L; Chen, Bingming; Czuprynski, Charles J; Wong, Amy C L; Kaspar, Charles W

    2012-09-01

    Salmonella enterica forms aseptate filaments with multiple nucleoids when cultured in hyperosmotic conditions. These osmotic-induced filaments are viable and form single colonies on agar plates even though they contain multiple genomes and have the potential to divide into multiple daughter cells. Introducing filaments that are formed during osmotic stress into culture conditions without additional humectants results in the formation of septa and their division into individual cells, which could present challenges to retrospective analyses of infectious dose and risk assessments. We sought to characterize the underlying mechanisms of osmotic-induced filament formation. The concentration of proteins and chromosomal DNA in filaments and control cells was similar when standardized by biomass. Furthermore, penicillin-binding proteins in the membrane of salmonellae were active in vitro. The activity of penicillin-binding protein 2 was greater in filaments than in control cells, suggesting that it may have a role in osmotic-induced filament formation. Filaments contained more ATP than did control cells in standardized cell suspensions, though the levels of two F(0)F(1)-ATP synthase subunits were reduced. Furthermore, filaments could septate and divide within 8 h in 0.2 × Luria-Bertani broth at 23°C, while nonfilamentous control cells did not replicate. Based upon the ability of filaments to septate and divide in this diluted broth, a method was developed to enumerate by plate count the number of individual, viable cells within a population of filaments. This method could aid in retrospective analyses of infectious dose of filamented salmonellae.

  3. Automated image analysis for quantification of filamentous bacteria

    DEFF Research Database (Denmark)

    Fredborg, M.; Rosenvinge, F. S.; Spillum, E.

    2015-01-01

    Background: Antibiotics of the beta-lactam group are able to alter the shape of the bacterial cell wall, e.g. filamentation or a spheroplast formation. Early determination of antimicrobial susceptibility may be complicated by filamentation of bacteria as this can be falsely interpreted as growth...... displaying different resistant profiles and differences in filamentation kinetics were used to study a novel image analysis algorithm to quantify length of bacteria and bacterial filamentation. A total of 12 beta-lactam antibiotics or beta-lactam-beta-lactamase inhibitor combinations were analyzed...

  4. Dynamics of Actin Filament Ends in a Network

    Science.gov (United States)

    Yang, Le; Sept, David; Carlsson, Anders

    2004-03-01

    The formation of filopodia-like bundles in vitro from a dendritic actin network has been observed(D. Vignjevic et al, J. Cell Biol. 160, 951 (2003)) to occur as a result of a nucleation process. We study the dynamics of the actin filament ends in such a network in order to evaluate the dynamics of the bundle nucleation process. Our model treats two semiflexible actin filaments fixed at one end and free at the other, moving according to Brownian dynamics. The initial filament positions are chosen according to a thermal distribution, and we evaluate the time for the filaments to come close enough to each other to interact and bind. The capture criterion is based either on the distance between filaments, or on a combination of distance and relative orientation. We evaluate the dependence of the capture time on the filament length and radius, and the distance between the filament bases. Since treating the movement of the individual monomers in filaments is computationally unwieldy, we treat the filament motion using a normal mode analysis which permits use of a much longer timestep. We find that this method yields rapid convergence even when only the few longest-wavelength modes are included.

  5. Formation and evolution of an active region filament

    CERN Document Server

    Kuckein, C; Pillet, V Martínez

    2013-01-01

    Several scenarios explaining how filaments are formed can be found in literature. In this paper, we analyzed the observations of an active region filament and critically evaluated the observed properties in the context of current filament formation models. This study is based on multi-height spectropolarimetric observations. The inferred vector magnetic field has been extrapolated starting either from the photosphere or from the chromosphere. The line-of-sight motions of the filament, which was located near disk center, have been analyzed inferring the Doppler velocities. We conclude that a part of the magnetic structure emerged from below the photosphere.

  6. Plutonium ion emission from carburized rhenium mass spectrometer filaments

    Energy Technology Data Exchange (ETDEWEB)

    Kelley, J.M.; Robertson, D.M.

    1985-01-01

    Physicochemical processes important to the application of thermal emission mass spectrometry were identified and clarified. Effects of filament carbon concentration and temperature on plutonium ion emissions from a carburized rhenium filament were determined. Filament carbon concentration profoundly affected the appearance and duration of an ion signal. A useful ion signal was produced only when the carbon saturation temperature of the filament was exceeded, at which point first-order kinetics were either achieved or closely approached. This paper explains observed ion emission behavior in terms of pausible carbothermic reduction reactions and carbon diffusion processes that direct the course of those reactions. 31 references, 5 figures.

  7. Frenet algorithm for simulations of fluctuating continuous elastic filaments

    Science.gov (United States)

    Kats, Yevgeny; Kessler, David A.; Rabin, Yitzhak

    2002-02-01

    We present an algorithm for generating the equilibrium configurations of fluctuating continuous elastic filaments, based on a combination of statistical mechanics and differential geometry. We use this to calculate the distribution function of the end-to-end distance of filaments with nonvanishing spontaneous curvature and show that for small twist and large bending rigidities there is an intermediate temperature range in which the filament becomes nearly completely stretched. We show that volume interactions can be incorporated into our algorithm, demonstrating this through the calculation of the effect of excluded volume on the end-to-end distance of the filament.

  8. Phosphatidylinositol-4-phosphate-dependent membrane traffic is critical for fungal filamentous growth.

    Science.gov (United States)

    Ghugtyal, Vikram; Garcia-Rodas, Rocio; Seminara, Agnese; Schaub, Sébastien; Bassilana, Martine; Arkowitz, Robert Alan

    2015-07-14

    The phospholipid phosphatidylinositol-4-phosphate [PI(4)P], generated at the Golgi and plasma membrane, has been implicated in many processes, including membrane traffic, yet its role in cell morphology changes, such as the budding to filamentous growth transition, is unknown. We show that Golgi PI(4)P is required for such a transition in the human pathogenic fungus Candida albicans. Quantitative analyses of membrane traffic revealed that PI(4)P is required for late Golgi and secretory vesicle dynamics and targeting and, as a result, is important for the distribution of a multidrug transporter and hence sensitivity to antifungal drugs. We also observed that plasma membrane PI(4)P, which we show is functionally distinct from Golgi PI(4)P, forms a steep gradient concomitant with filamentous growth, despite uniform plasma membrane PI-4-kinase distribution. Mathematical modeling indicates that local PI(4)P generation and hydrolysis by phosphatases are crucial for this gradient. We conclude that PI(4)P-regulated membrane dynamics are critical for morphology changes.

  9. Characterising Radio Emissions in Cosmic Filaments

    Science.gov (United States)

    Miller, R. O.

    2014-02-01

    A growing number of radio studies probe galaxy clusters into the low-power regime in which star formation is the dominant source of radio emission. However, at the time of writing no comparably deep observations have focused exclusively on the radio populations of cosmic filaments. This thesis describes the ATCA 2.1 GHz observations and subsequent analysis of two such regions - labelled Zone 1 (between clusters A3158 and A3125/A3128) and Zone 2 (between A3135 and A3145) - in the Horologium-Reticulum Supercluster (HRS). Source count profiles of both populations are discussed and a radio luminosity function for Zone 1 is generated. While the source counts of Zone 2 appear to be consistent with expected values, Zone 1 exhibits an excess of counts across a wide flux range (1 mJy< S_1.4 < 200 mJy). An excess in radio activity at the lower extent of this range (log P_1.4 < 22.5; within the SF-dominated regime) is also suggested by the radio luminosity function for that region, and brief colour analysis suggests that such an excess is indeed predominantly associated with a starforming population. The differences between the two filamentary zones is attributed to cosmic variation. The regions are both small (~ 1 degree square), and are significantly separated in the HRS. Further radio observations of filaments are required and the results combined into a larger sample size in order to arrive at a generalised model filamentary population.

  10. The Golgi apparatus: insights from filamentous fungi.

    Science.gov (United States)

    Pantazopoulou, Areti

    2016-01-01

    Cargo passage through the Golgi, albeit an undoubtedly essential cellular function, is a mechanistically unresolved and much debated process. Although the main molecular players are conserved, diversification of the Golgi among different eukaryotic lineages is providing us with tools to resolve standing controversies. During the past decade the Golgi apparatus of model filamentous fungi, mainly Aspergillus nidulans, has been intensively studied. Here an overview of the most important findings in the field is provided. Golgi architecture and dynamics, as well as the novel cell biology tools that were developed in filamentous fungi in these studies, are addressed. An emphasis is placed on the central role the Golgi has as a crossroads in the endocytic and secretory-traffic pathways in hyphae. Finally the major advances that the A. nidulans Golgi biology has yielded so far regarding our understanding of key Golgi regulators, such as the Rab GTPases RabC(Rab6) and RabE(Rab11), the oligomeric transport protein particle, TRAPPII, and the Golgi guanine nucleotide exchange factors of Arf1, GeaA(GBF1/Gea1) and HypB(BIG/Sec7), are highlighted.

  11. Morgellons disease: a filamentous borrelial dermatitis

    Directory of Open Access Journals (Sweden)

    Middelveen MJ

    2016-10-01

    Full Text Available Marianne J Middelveen, Raphael B Stricker International Lyme and Associated Diseases Society, Bethesda, MD, USA Abstract: Morgellons disease (MD is a dermopathy characterized by multicolored filaments that lie under, are embedded in, or project from skin. Although MD was initially considered to be a delusional disorder, recent studies have demonstrated that the dermopathy is associated with tickborne infection, that the filaments are composed of keratin and collagen, and that they result from proliferation of keratinocytes and fibroblasts in epithelial tissue. Culture, histopathological and molecular evidence of spirochetal infection associated with MD has been presented in several published studies using a variety of techniques. Spirochetes genetically identified as Borrelia burgdorferi sensu stricto predominate as the infective agent in most of the Morgellons skin specimens studied so far. Other species of Borrelia including Borrelia garinii, Borrelia miyamotoi, and Borrelia hermsii have also been detected in skin specimens taken from MD patients. The optimal treatment for MD remains to be determined. Keywords: Morgellons disease, dermatitis, Lyme disease, Borrelia burgdorferi, spirochetes

  12. Filamentation and supercontinuum generation in lanthanum glass

    Science.gov (United States)

    Yang, Yuxia; Liao, Meisong; Li, Xia; Bi, Wanjun; Ohishi, Yasutake; Cheng, Tonglei; Fang, Yongzheng; Zhao, Guoying; Gao, Weiqing

    2017-01-01

    A broadband supercontinuum (SC) covering 400-2800 nm in a 20 dB dynamic range is reported in a piece of highly nonlinear, low-dispersion bulk lanthanum glass without employing any lens to focus the pump pulse. The spectrum width obtained in this study is broader than the maximum spectrum width obtained in silica photonic crystal fibers. The filaments and bright conical visible emission patterns of the SC are analyzed. Under optimum pump conditions, an SC conversion efficiency of 75% is obtained. The SC conversion efficiency is confirmed to be stable. Additionally, the relationship between the input peak intensity and the output beam radius is elucidated by simulating the propagation of a Gaussian beam in the bulk lanthanum glass. A 0.20 mm stable laser beam radius at the end of the propagation domain is demonstrated in a certain input peak intensity range. This small value of the beam radius indicates that most of the output power is localized over a small region because of the Kerr focusing effect despite the existence of conical emission in the SC generation by filamentation. The findings of this study are of significance for the development of ultra-broadband SC sources based on bulk glasses and high peak power lasers.

  13. Underwater acoustic wave generation by filamentation of terawatt ultrashort laser pulses

    CERN Document Server

    Jukna, Vytautas; Milián, Carles; Brelet, Yohann; Carbonnel, Jérôme; André, Yves-Bernard; Guillermin, Régine; Sessarego, Jean-Pierre; Fattaccioli, Dominique; Mysyrowicz, André; Couairon, Arnaud; Houard, Aurélien

    2016-01-01

    Acoustic signals generated by filamentation of ultrashort TW laser pulses in water are characterized experimentally. Measurements reveal a strong influence of input pulse duration on the shape and intensity of the acoustic wave. Numerical simulations of the laser pulse nonlinear propagation and the subsequent water hydrodynamics and acoustic wave generation show that the strong acoustic emission is related to the mechanism of superfilamention in water. The elongated shape of the plasma volume where energy is deposited drives the far-field profile of the acoustic signal, which takes the form of a radially directed pressure wave with a single oscillation and a very broad spectrum.

  14. Density filament and helical field line structures in three dimensional Weibel-mediated collisionless shocks

    Science.gov (United States)

    Moritaka, Toseo; Sakawa, Youichi; Kuramitsu, Yasuhiro; Morita, Taichi; Yamaura, Yuta; Ishikawa, Taishi; Takabe, Hideaki

    2016-03-01

    Collisionless shocks mediated by Weibel instability are attracting attention for their relevance to experimental demonstrations of astrophysical shocks in high-intensity laser facilities. The three dimensional structure of Weibel-mediated shocks is investigated through a fully kinetic particle-in-cell simulation. The structures obtained are characterized by the following features: (i) helical magnetic field lines elongated in the direction upstream of the shock region, (ii) high and low density filaments inside the helical field lines. These structures originate from the interaction between counter-streaming plasma flow and magnetic vortexes caused by Weibel instability, and potentially affect the shock formation mechanism.

  15. Malaria parasites form filamentous cell-to-cell connections during reproduction in the mosquito midgut

    Institute of Scientific and Technical Information of China (English)

    Ingrid Rupp; Gabriele Pradel; Ludmilla Sologub; Kim C Williamson; Matthias Scheuermayer; Luc Reininger; Christian Doerig; Saliha Eksi; Davy U Kombilaa; Matthias Frank

    2011-01-01

    Physical contact is important for the interaction between animal cells, but it can represent a major challenge for protists like malaria parasites. Recently, novel filamentous cell-cell contacts have been identified in different types of eukaryotic cells and termed nanotubes due to their morphological appearance. Nanotubes represent small dynamic membranous extensions that consist of F-actin and are considered an ancient feature evolved by eukaryotic cells to establish contact for communication. We here describe similar tubular structures in the malaria pathogen Plasmodium falciparum, which emerge from the surfaces of the forming gametes upon gametocyte activation in the mosquito midgut. The filaments can exhibit a length of>100 μm and contain the F-actin isoform actin 2. They actively form within a few minutes after gametocyte activation and persist until the zygote transforms into the ookinete. The filaments originate from the parasite plasma membrane, are close ended and express adhesion proteins on their surfaces that are typically found in gametes, like Pfs230, Pfs48/45 or Pfs25, but not the zygote surface protein Pfs28. We show that these tubular structures represent long-distance cell-to-cell connections between sexual stage parasites and demonstrate that they meet the characteristics of nanotubes. We propose that malaria parasites utilize these adhesive "nanotubes" in order to facilitate intercellular contact between gametes during reproduction in the mosquito midgut.

  16. Effects of airflow on the distribution of filaments in atmospheric AC dielectric barrier discharge

    Science.gov (United States)

    Fan, Zhihui; Qi, Haicheng; Liu, Yidi; Yan, Huijie; Ren, Chunsheng

    2016-12-01

    Atmospheric-pressure dielectric barrier discharge (DBD) accompanied by airflow has attracted a significant attention for its extensive applications. In this paper, the effects of airflow on the characteristics of the atmospheric air DBD plasma are experimentally investigated using the DBD reactor excited by a 15 kHz AC power source. In order to study the discharge filaments distribution at different flow rates, transparent conductive indium tin oxide film is used as the upper electrode, and quartz glasses are used as insulated dielectrics. Experiment results prove that the breakdown voltage is decreased and more current pulses with declined amplitudes are produced when the airflow is introduced into the discharge gap. It is confirmed that although the discharge seems to be diffuse in the presence of airflow to the naked eyes, the discharge mode remains filamentary in the intensified charge-coupled device images within a single AC cycle. By acquiring the images with a different exposure time, it can be recognized that the discharge filaments move along the flow field direction with a velocity less than the corresponding flow rate. The movement of discharge filaments is attributed to the motion of the charge induced by the airflow.

  17. Spectropolarimetric observations of an arch filament system with the GREGOR solar telescope

    CERN Document Server

    Balthasar, H; Manrique, S J González; Kuckein, C; Kavka, J; Kučera, A; Schwartz, P; Vašková, R; Berkefeld, T; Vera, M Collados; Denker, C; Feller, A; Hofmann, A; Lagg, A; Nicklas, H; Suárez, D Orozco; Yabar, A Pastor; Rezaei, R; Schlichenmaier, R; Schmidt, D; Schmidt, W; Sigwarth, M; Sobotka, M; Solanki, S K; Soltau, D; Staude, J; Strassmeier, K G; Volkmer, R; von der Lühe, O; Waldmann, T

    2016-01-01

    Arch filament systems occur in active sunspot groups, where a fibril structure connects areas of opposite magnetic polarity, in contrast to active region filaments that follow the polarity inversion line. We used the GREGOR Infrared Spectrograph (GRIS) to obtain the full Stokes vector in the spectral lines Si I 1082.7 nm, He I 1083.0 nm, and Ca I 1083.9 nm. We focus on the near-infrared calcium line to investigate the photospheric magnetic field and velocities, and use the line core intensities and velocities of the helium line to study the chromospheric plasma. The individual fibrils of the arch filament system connect the sunspot with patches of magnetic polarity opposite to that of the spot. These patches do not necessarily coincide with pores, where the magnetic field is strongest. Instead, areas are preferred not far from the polarity inversion line. These areas exhibit photospheric downflows of moderate velocity, but significantly higher downflows of up to 30 km/s in the chromospheric helium line. Our f...

  18. Robustness of the filamentation instability in arbitrarily oriented magnetic field: Full three dimensional calculation

    Energy Technology Data Exchange (ETDEWEB)

    Bret, A., E-mail: antoineclaude.bret@uclm.es [ETSI Industriales, Universidad de Castilla-La Mancha, 13071 Ciudad Real, Spain and Instituto de Investigaciones Energéticas y Aplicaciones Industriales, Campus Universitario de Ciudad Real, 13071 Ciudad Real (Spain)

    2014-02-15

    The filamentation (Weibel) instability plays a key role in the formation of collisionless shocks which are thought to produce Gamma-Ray-Bursts and High-Energy-Cosmic-Rays in astrophysical environments. While it has been known for long that a flow-aligned magnetic field can completely quench the instability, it was recently proved in 2D that in the cold regime, such cancelation is possible if and only if the field is perfectly aligned. Here, this result is finally extended to a 3D geometry. Calculations are conducted for symmetric and asymmetric counter-streaming relativistic plasma shells. 2D results are retrieved in 3D: the instability can never be completely canceled for an oblique magnetic field. In addition, the maximum growth-rate is always larger for wave vectors lying in the plan defined by the flow and the oblique field. On the one hand, this bears consequences on the orientation of the generated filaments. On the other hand, it certifies 2D simulations of the problem can be performed without missing the most unstable filamentation modes.

  19. THE APPARATUS FOR ALIGNMENT OF THE PHOTOMETRIC LAMP FILAMENT

    Directory of Open Access Journals (Sweden)

    V. A. Dlugunovich

    2015-01-01

    Full Text Available During photometric measurements involving the use of photometric lamps it is necessary that the filament of lamp takes a strictly predetermined position with respect to the photodetector and the optical axis of the photometric setup. The errors in positioning of alignment filament with respect to the optical axis of the measuring system lead to increase the uncertainty of measurement of the photometric characteristics of the light sources. A typical method for alignment of filament of photometric lamps is based on the use a diopter tubes (telescopes. Using this method, the mounting of filament to the required position is carried out by successive approximations, which requires special concentration and a lot of time. The aim of this work is to develop an apparatus for alignment which allows simultaneous alignment of the filament of lamps in two mutually perpendicular planes. The method and apparatus for alignment of the photometric lamp filament during measurements of the photometric characteristics of light sources based on two digital video cameras is described in this paper. The apparatus allows to simultaneously displaying the image of lamps filament on the computer screen in two mutually perpendicular planes. The apparatus eliminates a large number of functional units requiring elementwise alignment and reduces the time required to carry out the alignment. The apparatus also provides the imaging of lamps filament with opaque coated on the bulb. The apparatus is used at the National standard of light intensity and illuminance units of the Republic of Belarus. 

  20. Motion of a Vortex Filament in the Half Space

    CERN Document Server

    Aiki, Masashi

    2010-01-01

    A model equation for the motion of a vortex filament immersed in three dimensional, incompressible and inviscid fluid is investigated as a humble attempt to model the motion of a tornado. We solve an initial-boundary value problem in the half space where we impose a boundary condition in which the vortex filament is allowed to move on the boundary.

  1. Fossil evidence for spin alignment of SDSS galaxies in filaments

    NARCIS (Netherlands)

    Jones, Bernard J.T.; Weygaert, Rien van de; Arag´on-Calvo, Miguel A.

    2010-01-01

    We search for and find fossil evidence that the distribution of the spin axes of galaxies in cosmic web filaments relative to their host filaments are not randomly distributed. This would indicate that the action of large scale tidal torques effected the alignments of galaxies located in cosmic fila

  2. Physical principles of filamentous protein self-assembly kinetics

    Science.gov (United States)

    Michaels, Thomas C. T.; Liu, Lucie X.; Meisl, Georg; Knowles, Tuomas P. J.

    2017-04-01

    The polymerization of proteins and peptides into filamentous supramolecular structures is an elementary form of self-organization of key importance to the functioning biological systems, as in the case of actin biofilaments that compose the cellular cytoskeleton. Aberrant filamentous protein self-assembly, however, is associated with undesired effects and severe clinical disorders, such as Alzheimer’s and Parkinson’s diseases, which, at the molecular level, are associated with the formation of certain forms of filamentous protein aggregates known as amyloids. Moreover, due to their unique physicochemical properties, protein filaments are finding extensive applications as biomaterials for nanotechnology. With all these different factors at play, the field of filamentous protein self-assembly has experienced tremendous activity in recent years. A key question in this area has been to elucidate the microscopic mechanisms through which filamentous aggregates emerge from dispersed proteins with the goal of uncovering the underlying physical principles. With the latest developments in the mathematical modeling of protein aggregation kinetics as well as the improvement of the available experimental techniques it is now possible to tackle many of these complex systems and carry out detailed analyses of the underlying microscopic steps involved in protein filament formation. In this paper, we review some classical and modern kinetic theories of protein filament formation, highlighting their use as a general strategy for quantifying the molecular-level mechanisms and transition states involved in these processes.

  3. Filament Shape Versus Coronal Potential Magnetic Field Structure

    CERN Document Server

    Filippov, Boris

    2015-01-01

    Solar filament shape in projection on disc depends on the structure of the coronal magnetic field. We calculate the position of polarity inversion lines (PILs) of coronal potential magnetic field at different heights above the photosphere, which compose the magnetic neutral surface, and compare with them the distribution of the filament material in H$\\alpha$ chromospheric images. We found that the most of the filament material is enclosed between two polarity inversion lines (PILs), one at a lower height close to the chromosphere and one at a higher level, which can be considered as a height of the filament spine. Observations of the same filament on the limb by the {\\it STEREO} spacecraft confirm that the height of the spine is really very close to the value obtained from the PIL and filament border matching. Such matching can be used for filament height estimations in on-disk observations. Filament barbs are housed within protruding sections of the low-level PIL. On the base of simple model, we show that th...

  4. A Filament-Associated Halo Coronal Mass Ejection

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    There are only a few observations published so far that show the initiation of a coronal mass ejection (CME) and illustrate the magnetic changes in the surface origin of a CME. Any attempt to connect a CME with its local solar activities is meaningful. In this paper we present a clear instance of a halo CME initiation. A careful analysis of magnetograms shows that the only obvious magnetic changes in the surface region of the CME is a magnetic flux cancellation underneath a quiescent filament. The early disturbance was seen as the slow upward motion in segments of the quiescent filament. Four hours later, the filament was accelerated to about 50 km s-1 and erupted. While a small part of the material in the filament was ejected into the upper corona, most of the mass was transported to a nearby region. About forty minutes later, the transported mass was also ejected partially to the upper corona. The eruption of the filament triggered a two-ribbon flare, with post-flare loops connecting the flare ribbons. A halo CME, which is inferred to be associated with the eruptive filament, was observed from LASCO/C2 and C3. The halo CME contained two CME events, each event corresponded to a partial mass ejection of the filament. We suggest that the magnetic reconnection at the lower atmosphere is responsible for the filament eruption and the halo CME.

  5. Calibration and Temperature Profile of a Tungsten Filament Lamp

    Science.gov (United States)

    de Izarra, Charles; Gitton, Jean-Michel

    2010-01-01

    The goal of this work proposed for undergraduate students and teachers is the calibration of a tungsten filament lamp from electric measurements that are both simple and precise, allowing to determine the temperature of tungsten filament as a function of the current intensity. This calibration procedure was first applied to a conventional filament…

  6. Ambipolar diffusion regulated collapse of filaments threaded by perpendicular magnetic fields

    Science.gov (United States)

    Burge, C. A.; Van Loo, S.; Falle, S. A. E. G.; Hartquist, T. W.

    2016-11-01

    Context. In giant molecular clouds (GMCs), the fractional ionisation is low enough that the neutral and charged particles are weakly coupled. A consequence of this is that the magnetic flux redistributes within the cloud, allowing an initially magnetically supported region to collapse. Aims: We aim to elucidate the effects of ambipolar diffusion on the evolution of infinitely long filaments and the effect of decaying turbulence on that evolution. Methods: First, in ideal magnetohydrodynamics (MHD), a two-dimensional cylinder of an isothermal magnetised plasma with initially uniform density was allowed to evolve to an equilibrium state. Then, the response of the filament to ambipolar diffusion was followed using an adaptive mesh refinement multifluid MHD code. Various ambipolar resistivities were chosen to reflect different ratios of Jeans length to ambipolar diffusion length scale. To study the effect of turbulence on the ambipolar diffusion rate, we perturbed the equilibrium filament with a turbulent velocity field quantified by a rms sonic Mach number, Mrms, of 10, 3 or 1. Results: We numerically reproduce the density profiles for filaments that are in magnetohydrostatic and pressure equilibrium with their surroundings obtained in a published model and show that these equilibria are dynamically stable. If the effect of ambipolar diffusion is considered, these filaments lose magnetic support initiating cloud collapse. The filaments do not lose magnetic flux. Rather the magnetic flux is redistributed within the filament from the dense centre towards the diffuse envelope. The rate of the collapse is inversely proportional to the fractional ionisation and two gravitationally-driven ambipolar diffusion regimes for the collapse are observed as predicted in a published model. For high values of the ionisation coefficient, that is X ≥ 10-7, the gas is strongly coupled to the magnetic field and the Jeans length is larger than the ambipolar diffusion length scale. Then

  7. TETHER-CUTTING RECONNECTION BETWEEN TWO SOLAR FILAMENTS TRIGGERING OUTFLOWS AND A CORONAL MASS EJECTION

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Huadong; Zhang, Jun; Li, Leping [Key Laboratory of Solar Activity, National Astronomical Observatories, Chinese Academy of Sciences, Beijing 100012 (China); Ma, Suli, E-mail: hdchen@nao.cas.cn [College of Science, China University of Petroleum, Qingdao 266580 (China)

    2016-02-20

    Triggering mechanisms of solar eruptions have long been a challenge. A few previous case studies have indicated that preceding gentle filament merging via magnetic reconnection may launch following intense eruption, according to the tether-cutting (TC) model. However, the detailed process of TC reconnection between filaments has not been exhibited yet. In this work, we report the high-resolution observations from the Interface Region Imaging Spectrometer (IRIS) of TC reconnection between two sheared filaments in NOAA active region 12146. The TC reconnection commenced on ∼15:35 UT on 2014 August 29 and triggered an eruptive GOES C4.3-class flare ∼8 minutes later. An associated coronal mass ejection appeared in the field of view of the Solar and Heliospheric Observatory/LASCO C2 about 40 minutes later. Thanks to the high spatial resolution of IRIS data, bright plasma outflows generated by the TC reconnection are clearly observed, which moved along the subarcsecond fine-scale flux tube structures in the erupting filament. Based on the imaging and spectral observations, the mean plane-of-sky and line-of-sight velocities of the TC reconnection outflows are separately measured to be ∼79 and 86 km s{sup −1}, which derives an average real speed of ∼120 km s{sup −1}. In addition, it is found that spectral features, such as peak intensities, Doppler shifts, and line widths in the TC reconnection region are evidently enhanced compared to those in the nearby region just before the flare.

  8. Biophysics of filament length regulation by molecular motors

    CERN Document Server

    Kuan, Hui-Shun

    2013-01-01

    Regulating physical size is an essential problem that biological organisms must solve from the subcellular to the organismal scales, but it is not well understood what physical principles and mechanisms organisms use to sense and regulate their size. Any biophysical size-regulation scheme operates in a noisy environment and must be robust to other cellular dynamics and fluctuations. This work develops theory of filament length regulation inspired by recent experiments on kinesin-8 motor proteins, which move with directional bias on microtubule filaments and alter microtubule dynamics. Purified kinesin-8 motors can depolymerize chemically-stabilized microtubules. In the length-dependent depolymerization model, the rate of depolymerization tends to increase with filament length, because long filaments accumulate more motors at their tips and therefore shorten more quickly. When balanced with a constant filament growth rate, this mechanism can lead to a fixed polymer length. However, the mechanism by which kines...

  9. Persistent nuclear actin filaments inhibit transcription by RNA polymerase II.

    Science.gov (United States)

    Serebryannyy, Leonid A; Parilla, Megan; Annibale, Paolo; Cruz, Christina M; Laster, Kyle; Gratton, Enrico; Kudryashov, Dmitri; Kosak, Steven T; Gottardi, Cara J; de Lanerolle, Primal

    2016-09-15

    Actin is abundant in the nucleus and it is clear that nuclear actin has important functions. However, mystery surrounds the absence of classical actin filaments in the nucleus. To address this question, we investigated how polymerizing nuclear actin into persistent nuclear actin filaments affected transcription by RNA polymerase II. Nuclear filaments impaired nuclear actin dynamics by polymerizing and sequestering nuclear actin. Polymerizing actin into stable nuclear filaments disrupted the interaction of actin with RNA polymerase II and correlated with impaired RNA polymerase II localization, dynamics, gene recruitment, and reduced global transcription and cell proliferation. Polymerizing and crosslinking nuclear actin in vitro similarly disrupted the actin-RNA-polymerase-II interaction and inhibited transcription. These data rationalize the general absence of stable actin filaments in mammalian somatic nuclei. They also suggest a dynamic pool of nuclear actin is required for the proper localization and activity of RNA polymerase II.

  10. Conformations, hydrodynamic interactions, and instabilities of sedimenting semiflexible filaments

    CERN Document Server

    Saggiorato, G; Winkler, R G; Gompper, G

    2015-01-01

    The conformations and dynamics of semiflexible filaments subject to a homogeneous external (gravitational) field, e.g., in a centrifuge, are studied numerically and analytically. The competition between hydrodynamic drag and bending elasticity generates new shapes and dynamical features. We show that the shape of a semiflexible filament undergoes instabilities as the external field increases. We identify two transitions that correspond to the excitation of higher bending modes. In particular, for strong fields the filament stabilizes in a non-planar shape, resulting in a sideways drift or in helical trajectories. For two interacting filaments, we find the same transitions, with the important consequence that the new non-planar shapes have an effective hydrodynamic repulsion, in contrast to the planar shapes which attract themselves even when their osculating planes are rotated with respect to each other. For the case of planar filaments, we show analytically and numerically that the relative velocity is not n...

  11. Sedimentation of slender elastic filaments in a viscous liquid

    Science.gov (United States)

    Raspa, Veronica; Lindner, Anke; Du Roure, Olivia; Duprat, Camille

    2016-11-01

    We explore experimentally the dynamics of slender flexible filaments sedimenting in a viscous fluid at low Reynolds number. The observed deformations and dynamics result from a balance between viscous, elastic and gravitational forces on the slender body and thus are characterized by a dimensionless elasto-gravity number. We present measurements of the filaments stationary shape, velocities and trajectories for different initial conditions and filament characteristics (i.e: density, bending rigidity, size). In particular, we observe bending and reorientation of the filament, and investigate the conditions under which the filament can buckle. The introduction of elasticity broadens the spectrum of accessible sedimentation stationary states, compared to those appearing for their rigid counterparts where nor bending or buckling are allowed.

  12. Energetic protons from a disappearing solar filament

    Energy Technology Data Exchange (ETDEWEB)

    Kahler, S.W.; Cliver, E.W.; Cane, R.E.; McGuire, H.V.; Stone, R.G.

    1985-01-01

    A solar energetic (E> 50MeV) particle (SEP) event observed at 1 AU began about 1500 UT on 1981 December 5. This event was associated with a fast coronal mass ejection observed with the Solwind coronagraph on the P78-1 satellite. No metric type II or type IV burst was observed, but a weak interplanetary type II burst was observed with the low-frequency radio experimentation ISEE-3 satellite. The mass ejection was associated with the eruption of a large solar quiescent filament that lay well away from any active regions. The eruption resulted in a H-alpha double-ribbon structure which straddled the magnetic inversion line. No impulsive phase was obvious in either the H-alpha or the microwave observations. The event indicates that neither a detectable impulsive phase nor a strong or complex magnetic field is necessary for the production of energetic ions.

  13. Filament wound data base development, revision 1

    Science.gov (United States)

    Sharp, R. Scott; Braddock, William F.

    1985-01-01

    The objective was to update the present Space Shuttle Solid Rocket Booster (SRB) baseline reentry aerodynamic data base and to develop a new reentry data base for the filament wound case SRB along with individual protuberance increments. Lockheed's procedures for performing these tasks are discussed. Free fall of the SRBs after separation from the Space Shuttle Launch Vehicle is completely uncontrolled. However, the SRBs must decelerate to a velocity and attitude that is suitable for parachute deployment. To determine the SRB reentry trajectory parameters, including the rate of deceleration and attitude history during free-fall, engineers at Marshall Space Flight Center are using a six-degree-of-freedom computer program to predict dynamic behavior. Static stability aerodynamic coefficients are part of the information required for input into this computer program. Lockheed analyzed the existing reentry aerodynamic data tape (Data Tape 5) for the current steel case SRB. This analysis resulted in the development of Data Tape 7.

  14. Bending artificial muscle from nylon filaments

    Science.gov (United States)

    Mirvakili, Seyed M.; Hunter, Ian W.

    2016-04-01

    Highly oriented nylon and polyethylene fibers shrink in length and expand in diameter when heated. Using this property, in this work, for the first time we are introducing a type of bending artificial muscle from nylon filaments such as fishing line. Reversible radius of curvature of 0.23 mm-1 was achieved with maximum reversible bending amplitude of 115 mm for the nylon bending actuator. Peak force of up to 2040 mN was measured with a catch-state force of up to 40% of the active force. A 3 dB roll-off frequency of around 0.7 Hz was observed in the frequency response of the bending actuator in water.

  15. Validation of the filament winding process model

    Science.gov (United States)

    Calius, Emilo P.; Springer, George S.; Wilson, Brian A.; Hanson, R. Scott

    1987-01-01

    Tests were performed toward validating the WIND model developed previously for simulating the filament winding of composite cylinders. In these tests two 24 in. long, 8 in. diam and 0.285 in. thick cylinders, made of IM-6G fibers and HBRF-55 resin, were wound at + or - 45 deg angle on steel mandrels. The temperatures on the inner and outer surfaces and inside the composite cylinders were recorded during oven cure. The temperatures inside the cylinders were also calculated by the WIND model. The measured and calculated temperatures were then compared. In addition, the degree of cure and resin viscosity distributions inside the cylinders were calculated for the conditions which existed in the tests.

  16. Natural Fiber Filament Wound Composites: A Review

    Directory of Open Access Journals (Sweden)

    Mohamed Ansari Suriyati

    2017-01-01

    Full Text Available In recent development, natural fibers have attracted the interest of engineers, researchers, professionals and scientists all over the world as an alternative reinforcement for fiber reinforced polymer composites. This is due to its superior properties such as high specific strength, low weight, low cost, fairly good mechanical properties, non-abrasive, eco-friendly and bio-degradable characteristics. In this point of view, natural fiber-polymer composites (NFPCs are becoming increasingly utilized in a wide variety of applications because they represent an ecological and inexpensive alternative to conventional petroleum-derived materials. On the other hand, considerable amounts of organic waste and residue from the industrial and agricultural processes are still underutilized as low-value energy sources. This is a comprehensive review discussing about natural fiber reinforced composite produced by filament winding technique.

  17. Simulation Study of Magnetic Fields generated by the Electromagnetic Filamentation Instability driven by Pair Loading

    Science.gov (United States)

    Nishikawa, K.-I.; Ramirez-Ruiz, E.; Hededal, C.; Hardee, P.; Mizuno, Y.; Fishman, G. J.

    2007-01-01

    Using a 3-D relativistic particle-in-cell (RPIC) code, we have investigated particle acceleration associated with a relativistic electron-positron (cold) jet propagating into ambient electron-positron and electron-ion plasmas without initial magnetic fields in order to investigate the nonlinear stage of the Weibel instability. We have also performed simulations with broad Lorentz factor distribution of jet electrons and positrons, which are assumed to be created by the photon annihilation. The growth time and nonlinear saturation levels depend on the initial jet parallel velocity distributions and ambient plasma. Simulations show that the Weibel instability created in the collisionless shocks accelerates jet and ambient particles both perpendicular and parallel to the jet propagation direction. The nonlinear fluctuation amplitude of densities, currents, electric, and magnetic fields in the electron-ion ambient plasma are larger than those in the electron-positron ambient plasma. We have shown that plasma instabilities driven by these streaming electron-positron pairs are responsible for the excitation of near-equipartition, turbulent magnetic fields. These fields maintain a strong saturated level on timescales much longer than the electron skin depth at least for the duration of the simulations. Our results reveal the importance of the electromagnetic filamentation instability in ensuring an effective coupling between electron-positron pairs and ions, and may help explain the origin of large upstream fields in GRB shock.

  18. Fossil evidence for spin alignment of SDSS galaxies in filaments

    CERN Document Server

    Jones, Bernard J T; Aragon-Calvo, Miguel A

    2010-01-01

    We search for and find fossil evidence that the distribution of the spin axes of galaxies in cosmic web filaments relative to their host filaments are not randomly distributed. This would indicate that the action of large scale tidal torques effected the alignments of galaxies located in cosmic filaments. To this end, we constructed a catalogue of clean filaments containing edge-on galaxies. We started by applying the Multiscale Morphology Filter (MMF) technique to the galaxies in a redshift-distortion corrected version of the Sloan Digital Sky Survey DR5. From that sample we extracted those 426 filaments that contained edge-on galaxies (b/a < 0.2). These filaments were then visually classified relative to a variety of quality criteria. Statistical analysis using "feature measures" indicates that the distribution of orientations of these edge-on galaxies relative to their parent filament deviate significantly from what would be expected on the basis of a random distribution of orientations. The interpretat...

  19. An observational detection of the bridge effect of void filaments

    CERN Document Server

    Shim, Junsup; Hoyle, Fiona

    2015-01-01

    The bridge effect of void filaments is a phrase coined by Park & Lee (2009b) to explain the correlations found in a numerical experiment between the luminosity of the void galaxies and the degree of the straightness of their host filaments. Their numerical finding implies that a straight void filament provides a narrow channel for the efficient transportation of gas and matter particles from the surroundings into the void galaxies. To observationally confirm the presence of the bridge effect of void filaments, we identify the filamentary structures from the Sloan void catalog and determine the specific size of each void filament as a measure of its straightness. Using both classical and Bayesian statistics, we indeed detect a strong tendency that the void galaxies located in the more straight filaments are on average more luminous, which is in agreement with the numerical prediction. It is also shown that the strength of correlation increases with the spatial extent of the void filaments, which can be phy...

  20. Structure and assembly of calf hoof keratin filaments.

    Science.gov (United States)

    Sayers, Z; Michon, A M; Sicre, P; Koch, M H

    1990-05-01

    Keratin filament polypeptides were purified from calf hoof stratum corneum with the aim of studying the in vitro assembly process and determining structural parameters of reconstituted filaments. Anion exchange chromatography was used to obtain the most complete fractionation and identification of the acidic and basic components in the purified polypeptide mixture to date. The reassembly products of the fractionated components were investigated by electron microscopy. Fully reconstituted filaments yield homogeneous solutions, and values of 9.8 nm for the filament diameter and 25 kDa/nm for the mass per unit length (M/L) were obtained by X-ray solution scattering. The structures formed in solution at various stages of filament assembly were not sufficiently homogeneous to be studied by this technique. X-ray diffraction patterns from native stratum corneum display strong maxima at 3.6 and 5.4 nm. Contrary to previous reports, these maxima do not appear to be due to lipids since they are also observed with delipidated rehydrated specimens. A series of weak maxima is also detected in the patterns of dry tissue. The absence of these features in the patterns of reconstituted filaments suggests that, in contrast to some electron microscopic observations, there are no prominent regularities in the structure of calf hoof keratin filaments.

  1. MUSE discovers perpendicular arcs in Cen A inner filament

    CERN Document Server

    Hamer, Stephen; Combes, Francoise; Salomé, Quentin

    2014-01-01

    Evidence of AGN interaction with the intergalactic medium is observed in some galaxies and many cool core clusters. Radio-jets are suspected to dig large cavities into the surrounding gas. In most cases, very large optical filaments (several kpc) are also seen all around the central galaxy. The origin of these filaments is still not understood. Star forming regions are sometimes observed inside the filaments and are interpreted as evidence of positive feedback (AGN-triggered star formation). Cen A is a very nearby galaxy with huge optical filaments aligned with AGN radio-jet direction. Here, we search for line ratio variations along the filaments, kinematic evidence of shock-broadend line widths and large scale dynamical structures. We observe a 1'x1' region around the inner filament of Cen A with MUSE on the VLT during the Science Verification period. The brightest lines are the Halpha, [NII], [OIII] and [SII]. MUSE shows that the filaments are made of clumpy structures inside a more diffuse medium aligned w...

  2. Origin of the dense core mass function in contracting filaments

    CERN Document Server

    Myers, Philip C

    2013-01-01

    Mass functions of starless dense cores (CMFs) may arise from contraction and dispersal of core-forming filaments. In an illustrative model, a filament contracts radially by self-gravity, increasing the mass of its cores. During this contraction, FUV photoevaporation and ablation by shocks and winds disperse filament gas and limit core growth. The stopping times of core growth are described by a waiting-time distribution. The initial filament column density profile and the resulting CMF each match recent Herschel observations in detail. Then low-mass cores have short growth ages and arise from the innermost filament gas, while massive cores have long growth ages and draw from more extended filament gas. The model fits the initial density profile and CMF best for mean core density 2 10^4 cm^-3 and filament dispersal time scale 0.5 Myr. Then the typical core mass, radius, mean column density, and contraction speed are respectively 0.8 solar masses, 0.06 pc, 6 10^21 cm^-2, and 0.07 km s^-1, also in accord with ob...

  3. Is Gravitational Lensing by Intercluster Filaments Always Negligible?

    CERN Document Server

    Xu, Dong; Shan, HuanYuan; Famaey, Benoit; Limousin, Marceau; Zhao, HongSheng

    2007-01-01

    Intercluster filaments negligibly contribute to the weak lensing signal in General Relativity (GR), $\\gamma_{N}\\sim 10^{-4}-10^{-3}$. In the context of relativistic Modified Newtonian Dynamics (MOND) (Bekenstein 2004), however, a single filament inclined by $\\approx 45^\\circ$ from the line of sight can cause substantial distortion of background sources pointing towards the filament's axis ($\\kappa=\\gamma=(1-A^{-1})/2\\sim 0.01$); this is rigourous for infinitely long uniform filaments, but also qualitatively true for short filaments ($\\sim 30$Mpc), and even in regions where the projected matter density of the filament equals to zero. Since galaxies and galaxy clusters are generally embedded in filaments or are projected on such structures, this contribution complicates the interpretation of the weak lensing shear map in the context of MOND. While our analysis is of mainly theoretical interest providing order-of-magnitude estimates only, it seems safe to conclude that when modeling systems with anomalous weak l...

  4. The supramolecular organization of the C. elegans nuclear lamin filament.

    Science.gov (United States)

    Ben-Harush, Kfir; Wiesel, Naama; Frenkiel-Krispin, Daphna; Moeller, Dorothee; Soreq, Eyal; Aebi, Ueli; Herrmann, Harald; Gruenbaum, Yosef; Medalia, Ohad

    2009-03-13

    Nuclear lamins are involved in most nuclear activities and are essential for retaining the mechano-elastic properties of the nucleus. They are nuclear intermediate filament (IF) proteins forming a distinct meshwork-like layer adhering to the inner nuclear membrane, called the nuclear lamina. Here, we present for the first time, the three-dimensional supramolecular organization of lamin 10 nm filaments and paracrystalline fibres. We show that Caenorhabditis elegans nuclear lamin forms 10 nm IF-like filaments, which are distinct from their cytoplasmic counterparts. The IF-like lamin filaments are composed of three and four tetrameric protofilaments, each of which contains two partially staggered anti-parallel head-to-tail polymers. The beaded appearance of the lamin filaments stems from paired globular tail domains, which are spaced regularly, alternating between 21 nm and 27 nm. A mutation in an evolutionarily conserved residue that causes Hutchison-Gilford progeria syndrome in humans alters the supramolecular structure of the lamin filaments. On the basis of our structural analysis, we propose an assembly pathway that yields the observed 10 nm IF-like lamin filaments and paracrystalline fibres. These results serve also as a platform for understanding the effect of laminopathic mutations on lamin supramolecular organization.

  5. Investigating the Global Collapse of Filaments Using Smoothed Particle Hydrodynamics

    CERN Document Server

    Clarke, Seamus D

    2015-01-01

    We use Smoothed Particle Hydrodynamic simulations of cold, uniform density, self-gravitating filaments, to investigate their longitudinal collapse timescales; these timescales are important because they determine the time available for a filament to fragment into cores. A filament is initially characterised by its line-mass, $\\mu$, its radius, $R$ (or equivalently its density $\\rho\\!=\\!\\mu/\\pi R^2$), and its aspect ratio, $A\\;\\,(\\equiv Z/R$, where $Z$ is its half-length). The gas is only allowed to contract longitudinally, i.e. parallel to the symmetry axis of the filament (the $z$-axis). Pon et al. (2012) have considered the global dynamics of such filaments analytically. They conclude that short filaments ($A\\! \\!5$) undergo end-dominated collapse, i.e. two dense clumps form at the ends of the filament and converge on the centre sweeping up mass as they go, on a time-scale $t_{_{\\rm END}} \\sim 0.98\\,A^{1/2}\\,(G\\rho)^{-1/2}$. Our simulations do not corroborate these predictions. First, for all $A\\! > \\!2$, ...

  6. Formation of interstellar filaments: the role of magnetic fields

    Science.gov (United States)

    Ntormousi, Evangelia; Hennebelle, Patrick

    2014-07-01

    The filamentary structure of interstellar matter and its potential link to star formation has been brought back into focus recently by high resolution observational surveys. The densest of these filaments host pre-stellar and star forming cores, so explaining their properties is tightly correlated to revealing the initial conditions for star formation. To that end, in this work we employ high-resolution, 3D MHD simulations performed with the AMR code RAMSES to investigate two filament formation mechanisms: turbulence and sheet fragmentation. The first series of simulations has as a particular aim to address the origin of the characteristic filament thickness found in observations. Starting from the hypothesis that diffusive processes are responsible, our numerical experiments consist of (driven or decaying) ideal and non-ideal MHD turbulence, at a resolution that greatly exceeds the reported 0.1pc thickness. The comparison points to ion-neutral friction as an excellent candidate for setting a characteristic scale. In this picture dense filaments are the diffusive end of the turbulent cascade, an interpretation with important implications for our understanding of the dynamical behavior of the ISM. A second series of simulations investigates filament formation by the fragmentation of supershells, a scenario inspired by the analytical work of Nagai (1998). We find a striking difference between hydrodynamical and MHD runs as in the first case the sheets fragment into small cores, while in the latter they produce large filaments. In addition though, we see that low-density filaments preferentially form along the dominant component of the magnetic field. In this scenario filaments are prominent features in the ISM, but their fate is still determined by the local magnetic field. A detailed comparison of the filament properties between the two runs is work in progress and will reveal the physical mechanisms responsible for shaping the ISM and setting the initial conditions

  7. Magnetic Structure of a Filament during its Phase of Activity

    Science.gov (United States)

    Sasso, C.; Lagg, A.; Solanki, S. K.

    2008-09-01

    We analyze and interpret spectropolarimetric observations of an active region filament located close to the solar disc center, during its phase of activity. The observations are obtained in the chromospheric He I lines at 1083.0 nm. We provide novel observational results on the magnetic field measurements in solar filaments to give constraints to the theoretical models of their support in the solar corona. Our main goal is to interpret the behavior of the atmospheric parameters retrieved from the spectropolarimetric data to give a picture of the magnetic structure of the observed filament. The analysis of the observed polarization of the He I 1083.0 nm multiplet in the filament, carried out by inverting the Stokes profiles, reveals the presence of different unresolved atmospheric components of the He lines, coexisting within the resolution element (1.2 arcsec). The different components, belonging to different magnetic field lines, show supersonic up- and downflows, sometimes within the same resolution element. The He blueshifted components belong to mostly transversal field lines in the body of the filament. These field lines are found to be curving upwards on both sides. This picture suggests the presence of dipped field lines that are moving upward, carrying with them the filament material. During this movement, we also observe filament material flowing down along field lines having the same polarity as the photospheric field (i.e. they have the opposite inclination with respect to the dipped field lines). These downflows are faster at the filament end points and can reach values close to 10 times the speed of sound. The field lines are found to be almost parallel to the filament axis in the plane perpendicular to the line of sight. We use the two main theoretical models of prominence support (dip or flux rope models) to interpret the results obtained.

  8. HIERARCHICAL FRAGMENTATION OF THE ORION MOLECULAR FILAMENTS

    Energy Technology Data Exchange (ETDEWEB)

    Takahashi, Satoko; Ho, Paul T. P.; Su, Yu-Nung [Academia Sinica Institute of Astronomy and Astrophysics, P.O. Box 23-141, Taipei 10617, Taiwan (China); Teixeira, Paula S. [Institut fuer Astrophysik, Universitaet Wien, Tuerkenschanzstrasse 17, A-1180, Wien (Austria); Zapata, Luis A., E-mail: satoko_t@asiaa.sinica.edu.tw [Centro de Radioastronomia y Astrofisica, Universidad Nacional Autonoma de Mexico, Morelia, Michoacan 58090 (Mexico)

    2013-01-20

    We present a high angular resolution map of the 850 {mu}m continuum emission of the Orion Molecular Cloud-3 (OMC 3) obtained with the Submillimeter Array (SMA); the map is a mosaic of 85 pointings covering an approximate area of 6.'5 Multiplication-Sign 2.'0 (0.88 Multiplication-Sign 0.27 pc). We detect 12 spatially resolved continuum sources, each with an H{sub 2} mass between 0.3-5.7 M {sub Sun} and a projected source size between 1400-8200 AU. All the detected sources are on the filamentary main ridge (n{sub H{sub 2}}{>=}10{sup 6} cm{sup -3}), and analysis based on the Jeans theorem suggests that they are most likely gravitationally unstable. Comparison of multi-wavelength data sets indicates that of the continuum sources, 6/12 (50%) are associated with molecular outflows, 8/12 (67%) are associated with infrared sources, and 3/12 (25%) are associated with ionized jets. The evolutionary status of these sources ranges from prestellar cores to protostar phase, confirming that OMC-3 is an active region with ongoing embedded star formation. We detect quasi-periodical separations between the OMC-3 sources of Almost-Equal-To 17''/0.035 pc. This spatial distribution is part of a large hierarchical structure that also includes fragmentation scales of giant molecular cloud ( Almost-Equal-To 35 pc), large-scale clumps ( Almost-Equal-To 1.3 pc), and small-scale clumps ( Almost-Equal-To 0.3 pc), suggesting that hierarchical fragmentation operates within the Orion A molecular cloud. The fragmentation spacings are roughly consistent with the thermal fragmentation length in large-scale clumps, while for small-scale cores it is smaller than the local fragmentation length. These smaller spacings observed with the SMA can be explained by either a helical magnetic field, cloud rotation, or/and global filament collapse. Finally, possible evidence for sequential fragmentation is suggested in the northern part of the OMC-3 filament.

  9. Organic Acid Production by Filamentous Fungi

    Energy Technology Data Exchange (ETDEWEB)

    Magnuson, Jon K.; Lasure, Linda L.

    2004-05-03

    Many of the commercial production processes for organic acids are excellent examples of fungal biotechnology. However, unlike penicillin, the organic acids have had a less visible impact on human well-being. Indeed, organic acid fermentations are often not even identified as fungal bioprocesses, having been overshadowed by the successful deployment of the β-lactam processes. Yet, in terms of productivity, fungal organic acid processes may be the best examples of all. For example, commercial processes using Aspergillus niger in aerated stirred-tank-reactors can convert glucose to citric acid with greater than 80% efficiency and at final concentrations in hundreds of grams per liter. Surprisingly, this phenomenal productivity has been the object of relatively few research programs. Perhaps a greater understanding of this extraordinary capacity of filamentous fungi to produce organic acids in high concentrations will allow greater exploitation of these organisms via application of new knowledge in this era of genomics-based biotechnology. In this chapter, we will explore the biochemistry and modern genetic aspects of the current and potential commercial processes for making organic acids. The organisms involved, with a few exceptions, are filamentous fungi, and this review is limited to that group. Although yeasts including Saccharomyces cerevisiae, species of Rhodotorula, Pichia, and Hansenula are important organisms in fungal biotechnology, they have not been significant for commercial organic acid production, with one exception. The yeast, Yarrowia lipolytica, and related yeast species, may be in use commercially to produce citric acid (Lopez-Garcia, 2002). Furthermore, in the near future engineered yeasts may provide new commercial processes to make lactic acid (Porro, Bianchi, Ranzi, Frontali, Vai, Winkler, & Alberghina, 2002). This chapter is divided into two parts. The first contains a review of the commercial aspects of current and potential large

  10. Failure and nonfailure of fluid filaments in extension

    DEFF Research Database (Denmark)

    Hassager, Ole; Kolte, Mette Irene; Renardy, Michael

    1998-01-01

    fluid filaments do not exhibit ductile failure without surface tension; (2) some viscoelastic fluids form stable filaments while other fluids exhibit ductile failure as a result of an elastic instability; (3) for large Deborah numbers, the Considere condition may be used to predict the Hencky strain......The phenomenon of ductile failure of Newtonian and viscoelastic fluid filaments without surface tension is studied by a 2D finite element method and by ID non-linear analysis. The viscoelastic fluids are described by single integral constitutive equations. The main conclusions are: (1) Newtonian...

  11. Is the periplasm continuous in filamentous multicellular cyanobacteria?

    Science.gov (United States)

    Flores, Enrique; Herrero, Antonia; Wolk, C Peter; Maldener, Iris

    2006-10-01

    Filamentous, heterocyst-forming cyanobacteria are multicellular organisms in which individual cells exchange nutrients and, presumably, regulatory molecules. Unknown mechanisms underlie this exchange. Classical electron microscopy shows that filamentous cyanobacteria bear a Gram-negative cell wall comprising a peptidoglycan layer and an outer membrane that are external to the cytoplasmic membrane, and that the outer membrane appears to be continuous along the filament of cells. This implies that the periplasmic space between the cytoplasmic and outer membranes might also be continuous. We propose that a continuous periplasm could constitute a communication conduit for the transfer of compounds, which is essential for the performance of these bacteria as multicellular organisms.

  12. Forced motion of an elastic filament through a narrow tube

    Science.gov (United States)

    Freund, L. B.

    2015-12-01

    A polymer filament consisting of many similar molecules linked in a one-dimensional array is very flexible. As a result, shapes with a relatively large curvature can be accommodated elastically. When loosely confined in a thermal environment, such a flexible strand may become tangled owing to its flexibility. When confined within a narrow "tube" over its full length, a flexible molecule may behave quite differently. Here, we consider the qualitative nature of deformation of an individual filament when confined within a tube. Commonly the tube is formed within the cluster by a large number of surrounding filaments of the same type.

  13. A Comparison Study of a Solar Active-Region Eruptive Filament and a Neighboring Non-Eruptive Filament

    CERN Document Server

    Jiang, Chaowei; Feng, Xueshang; Hu, Qiang

    2015-01-01

    Solar active region (AR) 11283 is a very magnetically complex region and it has produced many eruptions. However, there exists a non-eruptive filament in the plage region just next to an eruptive one in the AR, which gives us an opportunity to perform a comparison analysis of these two filaments. The coronal magnetic field extrapolated using a CESE-MHD-NLFFF code (Jiang & Feng 2013) reveals that two magnetic flux ropes (MFRs) exist in the same extrapolation box supporting these two filaments, respectively. Analysis of the magnetic field shows that the eruptive MFR contains a bald-patch separatrix surface (BPSS) co-spatial very well with a pre-eruptive EUV sigmoid, which is consistent with the BPSS model for coronal sigmoids. The magnetic dips of the non-eruptive MFRs match H{\\alpha} observation of the non-eruptive filament strikingly well, which strongly supports the MFR-dip model for filaments. Compared with the non-eruptive MFR/filament (with a length of about 200 Mm), the eruptive MFR/filament is much ...

  14. The Apis mellifera Filamentous Virus Genome

    Directory of Open Access Journals (Sweden)

    Laurent Gauthier

    2015-07-01

    Full Text Available A complete reference genome of the Apis mellifera Filamentous virus (AmFV was determined using Illumina Hiseq sequencing. The AmFV genome is a double stranded DNA molecule of approximately 498,500 nucleotides with a GC content of 50.8%. It encompasses 247 non-overlapping open reading frames (ORFs, equally distributed on both strands, which cover 65% of the genome. While most of the ORFs lacked threshold sequence alignments to reference protein databases, twenty-eight were found to display significant homologies with proteins present in other large double stranded DNA viruses. Remarkably, 13 ORFs had strong similarity with typical baculovirus domains such as PIFs (per os infectivity factor genes: pif-1, pif-2, pif-3 and p74 and BRO (Baculovirus Repeated Open Reading Frame. The putative AmFV DNA polymerase is of type B, but is only distantly related to those of the baculoviruses. The ORFs encoding proteins involved in nucleotide metabolism had the highest percent identity to viral proteins in GenBank. Other notable features include the presence of several collagen-like, chitin-binding, kinesin and pacifastin domains. Due to the large size of the AmFV genome and the inconsistent affiliation with other large double stranded DNA virus families infecting invertebrates, AmFV may belong to a new virus family.

  15. Cold Milky Way Hi gas in filaments

    CERN Document Server

    Kalberla, P M W; Haud, U; Winkel, B; Bekhti, N Ben; Floeer, L; Lenz, D

    2016-01-01

    We investigate data from the Galactic Effelsberg--Bonn HI Survey (EBHIS), supplemented with data from the third release of the Galactic All Sky Survey (GASS III) observed at Parkes. We explore the all sky distribution of the local Galactic HI gas with $|v_{\\rm LSR}| 20^\\circ$ is described by a log-normal distribution, with a median Doppler temperature $T_{\\rm D} = 223$ K, derived from observed line widths that include turbulent contributions. The median neutral hydrogen (HI) column density is $N_{\\rm HI} \\simeq 10^{19.1}\\,{\\rm cm^{-2}}$. These CNM structures are embedded within a warm neutral medium (WNM) with $N_{\\rm HI} \\simeq 10^{20} {\\rm cm^{-2}}$. Assuming an average distance of 100 pc, we derive for the CNM sheets a thickness of $< 0.3$ pc. Adopting a magnetic field strength of $B_{\\rm tot} = (6.0 \\pm 1.8)\\mu$G, proposed by Heiles & Troland 2005, and assuming that the CNM filaments are confined by magnetic pressure, we estimate a thickness of 0.09 pc. Correspondingly the median volume density is ...

  16. Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi.

    Science.gov (United States)

    Soukup, Alexandra A; Keller, Nancy P; Wiemann, Philipp

    2016-01-01

    Filamentous fungi are historically known as rich sources for production of biologically active natural products, so-called secondary metabolites. One particularly pharmaceutically relevant chemical group of secondary metabolites is the nonribosomal peptides synthesized by nonribosomal peptide synthetases (NRPSs). As most of the fungal NRPS gene clusters leading to production of the desired molecules are not expressed under laboratory conditions, efforts to overcome this impediment are crucial to unlock the full chemical potential of each fungal species. One way to activate these silent clusters is by overexpressing and deleting global regulators of secondary metabolism. The conserved fungal-specific regulator of secondary metabolism, LaeA, was shown to be a valuable target for sleuthing of novel gene clusters and metabolites. Additionally, modulation of chromatin structures by either chemical or genetic manipulation has been shown to activate cryptic metabolites. Furthermore, NRPS-derived molecules seem to be affected by cross talk between the specific gene clusters and some of these metabolites have a tissue- or developmental-specific regulation. This chapter summarizes how this knowledge of different tiers of regulation can be combined to increase production of NRPS-derived metabolites in fungal species.

  17. Molecular phylogeny of metazoan intermediate filament proteins.

    Science.gov (United States)

    Erber, A; Riemer, D; Bovenschulte, M; Weber, K

    1998-12-01

    We have cloned cytoplasmic intermediate filament (IF) proteins from a large number of invertebrate phyla using cDNA probes, the monoclonal antibody IFA, peptide sequence information, and various RT-PCR procedures. Novel IF protein sequences reported here include the urochordata and nine protostomic phyla, i.e., Annelida, Brachiopoda, Chaetognatha, Echiura, Nematomorpha, Nemertea, Platyhelminthes, Phoronida, and Sipuncula. Taken together with the wealth of data on IF proteins of vertebrates and the results on IF proteins of Cephalochordata, Mollusca, Annelida, and Nematoda, two IF prototypes emerge. The L-type, which includes 35 sequences from 11 protostomic phyla, shares with the nuclear lamins the long version of the coil 1b subdomain and, in most cases, a homology segment of some 120 residues in the carboxyterminal tail domain. The S-type, which includes all four subfamilies (types I to IV) of vertebrate IF proteins, lacks 42 residues in the coil 1b subdomain and the carboxyterminal lamin homology segment. Since IF proteins from all three phyla of the chordates have the 42-residue deletion, this deletion arose in a progenitor prior to the divergence of the chordates into the urochordate, cephalochordate, and vertebrate lineages, possibly already at the origin of the deuterostomic branch. Four phyla recently placed into the protostomia on grounds of their 18S rDNA sequences (Brachiopoda, Nemertea, Phoronida, and Platyhelminthes) show IF proteins of the L-type and fit by sequence identity criteria into the lophotrochozoic branch of the protostomia.

  18. Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi

    Science.gov (United States)

    Soukup, Alexandra A.; Keller, Nancy P.; Wiemann, Philipp

    2016-01-01

    Filamentous fungi are historically known as rich sources for production of biologically active natural products, so-called secondary metabolites. One particularly pharmaceutically relevant chemical group of secondary metabolites is the nonribosomal peptides synthesized by nonribosomal peptide synthetases (NRPSs). As most of the fungal NRPS gene clusters leading to production of the desired molecules are not expressed under laboratory conditions, efforts to overcome this impediment are crucial to unlock the full chemical potential of each fungal species. One way to activate these silent clusters is by overexpressing and deleting global regulators of secondary metabolism. The conserved fungal-specific regulator of secondary metabolism, LaeA, was shown to be a valuable target for sleuthing of novel gene clusters and metabolites. Additionally, modulation of chromatin structures by either chemical or genetic manipulation has been shown to activate cryptic metabolites. Furthermore, NRPS-derived molecules seem to be affected by cross talk between the specific gene clusters and some of these metabolites have a tissue- or developmental-specific regulation. This chapter summarizes how this knowledge of different tiers of regulation can be combined to increase production of NRPS-derived metabolites in fungal species. PMID:26831707

  19. Equilibrium theory for braided elastic filaments

    Science.gov (United States)

    van der Heijden, Gert

    Motivated by supercoiling of DNA and other filamentous structures, we formulate a theory for equilibria of 2-braids, i.e., structures formed by two elastic rods winding around each other in continuous contact and subject to a local interstrand interaction. Unlike in previous work no assumption is made on the shape of the contact curve. Rather, this shape is found as part of the solution. The theory is developed in terms of a moving frame of directors attached to one of the strands with one of the directors pointing to the position of the other strand. The constant-distance constraint is automatically satisfied by the introduction of what we call braid strains. The price we pay is that the potential energy involves arclength derivatives of these strains, thus giving rise to a second-order variational problem. The Euler-Lagrange equations for this problem give balance equations for the overall braid force and moment referred to the moving frame as well as differential equations that can be interpreted as effective constitutive relations encoding the effect that the second strand has on the first as the braid deforms under the action of end loads. Simple analytical cases are discussed first and used as starting solutions in parameter continuation studies to compute classes of both open and closed (linked or knotted) braid solutions.

  20. The Apis mellifera Filamentous Virus Genome.

    Science.gov (United States)

    Gauthier, Laurent; Cornman, Scott; Hartmann, Ulrike; Cousserans, François; Evans, Jay D; de Miranda, Joachim R; Neumann, Peter

    2015-07-09

    A complete reference genome of the Apis mellifera Filamentous virus (AmFV) was determined using Illumina Hiseq sequencing. The AmFV genome is a double stranded DNA molecule of approximately 498,500 nucleotides with a GC content of 50.8%. It encompasses 247 non-overlapping open reading frames (ORFs), equally distributed on both strands, which cover 65% of the genome. While most of the ORFs lacked threshold sequence alignments to reference protein databases, twenty-eight were found to display significant homologies with proteins present in other large double stranded DNA viruses. Remarkably, 13 ORFs had strong similarity with typical baculovirus domains such as PIFs (per os infectivity factor genes: pif-1, pif-2, pif-3 and p74) and BRO (Baculovirus Repeated Open Reading Frame). The putative AmFV DNA polymerase is of type B, but is only distantly related to those of the baculoviruses. The ORFs encoding proteins involved in nucleotide metabolism had the highest percent identity to viral proteins in GenBank. Other notable features include the presence of several collagen-like, chitin-binding, kinesin and pacifastin domains. Due to the large size of the AmFV genome and the inconsistent affiliation with other large double stranded DNA virus families infecting invertebrates, AmFV may belong to a new virus family.

  1. Pattern formation in a complex plasma in high magnetic fields.

    Science.gov (United States)

    Schwabe, M; Konopka, U; Bandyopadhyay, P; Morfill, G E

    2011-05-27

    Low-pressure room-temperature neon, argon, krypton, and air plasmas were studied in magnetic fields up to flux densities of 2.3 T. Filaments appeared parallel to the magnetic field lines, and patterns such as spirals and concentric circles formed in the perpendicular direction. We link these effects to the magnetization of the ions. We also used a layer of embedded microparticles as probes in the plasma. Their motion changed dramatically from a collective rotation of the whole ensemble in moderate magnetic fields to a rotation in several small vortices centered at the filaments. © 2011 American Physical Society

  2. Persistence of strain in motor-filament assemblies

    CERN Document Server

    Gopinath, Arvind; Mahadevan, L

    2015-01-01

    Crosslinked semi-flexible and flexible filaments that are actively deformed by molecular motors occur in various natural settings, such as the ordered eukaryotic flagellum, and the disordered cytoskeleton. The deformation of these composite systems is driven by active motor forces and resisted by passive filament elasticity, and structural constraints due to permanent cross-links. Using a mean field theory for a one-dimensional ordered system, we show that the combination of motor activity and finite filament extensibility yields a characteristic persistence length scale over which active strain decays. This decay length is set by the ability of motors to respond to combination of the weak extensional elasticity, passive shear resistance and the viscoelastic properties of the motor assembly, and generalizes the notion of persistence in purely thermal filaments to active systems.

  3. Collective alignment of polar filaments by molecular motors.

    Science.gov (United States)

    Ziebert, F; Vershinin, M; Gross, S P; Aranson, I S

    2009-04-01

    We study the alignment of polar biofilaments, such as microtubules and actin, subject to the action of multiple molecular motors attached simultaneously to more than one filament. Focusing on a paradigm model of only two filaments interacting with multiple motors, we were able to investigate in detail the alignment dynamics. While almost no alignment occurs in the case of a single motor, the filaments become rapidly aligned due to the collective action of the motors. Our analysis shows that the alignment time is governed by the number of bound motors and the magnitude of the motors' stepping fluctuations. We predict that the time scale of alignment is in the order of seconds, much faster than that reported for passive crosslink-induced bundling. In vitro experiments on the alignment of microtubules by multiple-motor covered beads are in qualitative agreement. We also discuss another mode of fast alignment of filaments, namely the cooperation between motors and passive crosslinks.

  4. Spin alignment of dark matter haloes in filaments and walls

    CERN Document Server

    Arag'on-Calvo, M A; Jones, B J T; Van der Hulst, T; Arag\\'on-Calvo, Miguel A.; Weygaert, Rien van de; Jones, Bernard J. T.

    2006-01-01

    The MMF technique is used to segment the cosmic web as seen in a cosmological N-body simulation into wall-like and filament-like structures. We find that the spins and shapes of dark matter haloes are significantly correlated with each other and with the orientation of their host structures. The shape orientation is such that the halo minor axes tend to lie perpendicular to the host structure, be it a wall or filament. The orientation of the halo spin vector is mass dependent. Low mass haloes in walls and filaments have a tendency to have their spins oriented within the parent structure, while higher mass haloes in filaments have spins that tend to lie perpendicular to the parent structure.

  5. Filamentous Phages As a Model System in Soft Matter Physics.

    Science.gov (United States)

    Dogic, Zvonimir

    2016-01-01

    Filamentous phages have unique physical properties, such as uniform particle lengths, that are not found in other model systems of rod-like colloidal particles. Consequently, suspensions of such phages provided powerful model systems that have advanced our understanding of soft matter physics in general and liquid crystals in particular. We described some of these advances. In particular we briefly summarize how suspensions of filamentous phages have provided valuable insight into the field of colloidal liquid crystals. We also describe recent experiments on filamentous phages that have elucidated a robust pathway for assembly of 2D membrane-like materials. Finally, we outline unique structural properties of filamentous phages that have so far remained largely unexplored yet have the potential to further advance soft matter physics and material science.

  6. Health Risks Associated with Exposure to Filamentous Fungi

    Science.gov (United States)

    Egbuta, Mary Augustina; Mwanza, Mulunda

    2017-01-01

    Filamentous fungi occur widely in the environment, contaminating soil, air, food and other substrates. Due to their wide distribution, they have medical and economic implications. Regardless of their use as a source of antibiotics, vitamins and raw materials for various industrially important chemicals, most fungi and filamentous fungi produce metabolites associated with a range of health risks, both in humans and in animals. The association of filamentous fungi and their metabolites to different negative health conditions in humans and animals, has contributed to the importance of investigating different health risks induced by this family of heterotrophs. This review aims to discuss health risks associated with commonly occurring filamentous fungal species which belong to genera Aspergillus, Penicillium and Fusarium, as well as evaluating their pathogenicity and mycotoxic properties. PMID:28677641

  7. Biofilms from a Brazilian water distribution system include filamentous fungi.

    Science.gov (United States)

    Siqueira, V M; Oliveira, H M B; Santos, C; Paterson, R R M; Gusmão, N B; Lima, N

    2013-03-01

    Filamentous fungi in drinking water can block water pipes, can cause organoleptic biodeterioration, and are a source of pathogens. There are increasing reports of the involvement of the organisms in biofilms. This present study describes a sampling device that can be inserted directly into pipes within water distribution systems, allowing biofilm formation in situ. Calcofluor White M2R staining and fluorescent in situ hybridization with morphological analyses using epifluorescent microscopy were used to analyse biofilms for filamentous fungi, permitting direct observation of the fungi. DAPI (4',6-diamidino-2-phenylindole) was applied to detect bacteria. Filamentous fungi were detected in biofilms after 6 months on coupons exposed to raw water, decanted water and at the entrance of the water distribution system. Algae, yeast, and bacteria were also observed. The role of filamentous fungi requires further investigations.

  8. Elastic response of filamentous networks with compliant crosslinks.

    Science.gov (United States)

    Sharma, A; Sheinman, M; Heidemann, K M; MacKintosh, F C

    2013-11-01

    Experiments have shown that elasticity of disordered filamentous networks with compliant crosslinks is very different from networks with rigid crosslinks. Here, we model and analyze filamentous networks as a collection of randomly oriented rigid filaments connected to each other by flexible crosslinks that are modeled as wormlike chains. For relatively large extensions we allow for enthalpic stretching of crosslink backbones. We show that for sufficiently high crosslink density, the network linear elastic response is affine on the scale of the filaments' length. The nonlinear regime can become highly nonaffine and is characterized by a divergence of the elastic modulus at finite strain. In contrast to the prior predictions, we do not find an asymptotic regime in which the differential elastic modulus scales linearly with the stress, although an approximate linear dependence can be seen in a transition from entropic to enthalpic regimes. We discuss our results in light of recent experiments.

  9. Elastic response of filamentous networks with compliant crosslinks

    CERN Document Server

    Sharma, A; Heidemann, K M; MacKintosh, F C

    2013-01-01

    Experiments have shown that elasticity of disordered filamentous networks with compliant crosslinks is very different from networks with rigid crosslinks. Here, we model and analyze filamentous networks as a collection of randomly oriented rigid filaments connected to each other by flexible crosslinks that are modeled as worm-like chains. For relatively large extensions we allow for enthalpic stretching of crosslinks' backbones. We show that for sufficiently high crosslink density, the network linear elastic response is affine on the scale of the filaments' length. The nonlinear regime can become highly nonaffine and is characterized by a divergence of the elastic modulus at finite strain. In contrast to the prior predictions, we do not find an asymptotic regime in which the differential elastic modulus scales linearly with the stress, although an approximate linear dependence can be seen in a transition from entropic to enthalpic regimes. We discuss our results in light of the recent experiments.

  10. Bright Prospect for the Polyester Industrial Filament Sector

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    @@ Some large companies from Americaand Europe have constructed plantsin China or established long-termstable cooperation relationship withChinese enterprises. A bright devel-opment prospect has therefore beenbrought to the polyester industrial fila-ment sector in China.

  11. Myosin and Actin Filaments in Muscle: Structures and Interactions.

    Science.gov (United States)

    Squire, John M; Paul, Danielle M; Morris, Edward P

    2017-01-01

    In the last decade, improvements in electron microscopy and image processing have permitted significantly higher resolutions to be achieved (sometimes <1 nm) when studying isolated actin and myosin filaments. In the case of actin filaments the changing structure when troponin binds calcium ions can be followed using electron microscopy and single particle analysis to reveal what happens on each of the seven non-equivalent pseudo-repeats of the tropomyosin α-helical coiled-coil. In the case of the known family of myosin filaments not only are the myosin head arrangements under relaxing conditions being defined, but the latest analysis, also using single particle methods, is starting to reveal the way that the α-helical coiled-coil myosin rods are packed to give the filament backbones.

  12. Tropomyosin diffusion over actin subunits facilitates thin filament assembly

    Directory of Open Access Journals (Sweden)

    Stefan Fischer

    2016-01-01

    Full Text Available Coiled-coil tropomyosin binds to consecutive actin-subunits along actin-containing thin filaments. Tropomyosin molecules then polymerize head-to-tail to form cables that wrap helically around the filaments. Little is known about the assembly process that leads to continuous, gap-free tropomyosin cable formation. We propose that tropomyosin molecules diffuse over the actin-filament surface to connect head-to-tail to partners. This possibility is likely because (1 tropomyosin hovers loosely over the actin-filament, thus binding weakly to F-actin and (2 low energy-barriers provide tropomyosin freedom for 1D axial translation on F-actin. We consider that these unique features of the actin-tropomyosin interaction are the basis of tropomyosin cable formation.

  13. Eruptive filament of May 31, 1997, observed by SOHO.

    Science.gov (United States)

    Schmieder, B.; Heinzel, P.; Vial, J.-C.; Delaboudinière, J.-P.; Delannée, C.

    In the frame of the SUMER/CDS Joint Programme (JOP 17) the authors have detected the four Lyman lines in an erupting filament. The strong self-absorption in these lines, already reported for quiescent filaments, is still present in this highly dynamical event, but the authors observe a significant red asymmetry in the intensities of the two peaks. They ascribe it to an upward bulk motion of the filament, which they can actually see on a series of EIT images taken in the Fe XII line. Both sets of observations can lead to a determination of the velocity vector. The Doppler velocities are also derived from other lines detected by SUMER/CDS and can be correlated with the observations of the Pic-du-Midi MSDP obtained for this event. The filament eruption was also well observed by other GBO instruments in the Hα line (Meudon and Ondřejov).

  14. Successive filament eruptions within one solar breakout event

    CERN Document Server

    Shen, Yuandeng

    2014-01-01

    The magnetic breakout model has been widely used to explain solar eruptive activities. Here, we apply it to explain successive filament eruptions occurred in a quadrupolar magnetic source region. Based on the high temporal and spatial resolution, multi-wavelengths observations taken by the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamic Observatory (SDO), we find some signatures that support the occurrence of breakout-like external reconnection just before the start of the successive filament eruptions. Furthermore, the extrapolated three-dimensional coronal field also reveals that the magnetic topology above the quadrupolar source region resembles that of the breakout model. We propose a possible mechanism within the framework of the breakout model to interpret the successive filament eruptions, in which the so-called magnetic implosion mechanism is firstly introduced to be the physical linkage of successive filament eruptions. We conclude that the structural properties of coronal fields are im...

  15. Measurement of Reversed Extension Flow using the Filament Stretch Rheometer

    DEFF Research Database (Denmark)

    Rasmussen, Henrik K.; Skov, Anne Ladegaard; Nielsen, Jens Kromann;

    2008-01-01

    The measurement of material functions with reversed extension flow is demonstrated using the Filament Stretching Rheometer (FSR). This includes startup of uniaxial elongational flow (potentially until steady state) followed by biaxial squeezing, and large amplitude oscillatory elongation (LAOE). ...

  16. Actin filaments on myosin beds: The velocity distribution

    Science.gov (United States)

    Bourdieu, L.; Magnasco, M. O.; Winkelmann, D. A.; Libchaber, A.

    1995-12-01

    In vitro studies of actin filaments sliding on a myosin-coated surface are analyzed, filament by filament, at a sampling rate of 30 per second. For each filament, the mean arc length coordinate is computed and histograms of instantaneous velocities, along the arc length, are established. Two types of motion are observed, depending on the experimental conditions. The first one is characterized by a homogeneous flow, with well defined velocities. In this regime, specific defects are a constitutive part of the flow. It is observed at high temperature, at high myosin coverage, and with a particular mode of attachment of myosin to the surface. The second regime shows no clear velocity selection, but a broadband distribution. It is characterized by high friction and is observed at low temperature or low myosin density. (c) 1995 The American Physical Society

  17. Dynamics of wave fronts and filaments in anisotropic cardiac tissue

    CERN Document Server

    Dierckx, Hans J F M

    2015-01-01

    The heartbeat is mediated between cardiac cells by waves of electrical depolarisation. During cardiac arrhythmias, electrical activity was found to be organised in scroll waves which rotate around a dynamical filament curve. In this thesis, a curved-space approach is used to mathematically capture anisotropy of wave propagation. We derive for the first time the covariant laws of motion for traveling wave fronts and scroll wave filaments in anisotropic excitable media such as cardiac tissue. We show that locally varying anisotropy yields non-zero Riemann tensor components, which may alter the stability of scroll wave filaments. The instability of scroll wave filaments has been linked to transition from ventricular tachycardia to fibrillation.

  18. Filament propagation length of femtosecond pulses with different transverse modes

    CERN Document Server

    Kaya, N; Kaya, G; Strohaber, J; Kolomenskii, A A; Schuessler, H A

    2014-01-01

    We experimentally studied intense femtosecond pulse filamentation and propagation in water for Gaussian, Laguerre-Gaussian, and Bessel-Gaussian incident beams. These different transverse modes for incident laser pulses were created from an initial Gaussian beam by using a computer generated hologram technique. We found that the length of the filament induced by the Bessel-Gaussian incident beam was longer than that for the other transverse modes under the conditions of the same peak intensity, pulse duration, and the size of the central part of the beam. To better understand the Bessel-Gaussian beam propagation, we performed a more detailed study of the filament length as a function of the number of radial modal lobes. The length increased with the number of lobes, implying that the radial modal lobes serve as an energy reservoir for the filament formed by the central intensity peak.

  19. Calibration and temperature profile of a tungsten filament lamp

    Energy Technology Data Exchange (ETDEWEB)

    De Izarra, Charles [Groupe de Recherche sur l' Energetique des Milieux Ionises, UMR6606 Universite d' Orleans, CNRS, Faculte des Sciences, Site de Bourges, rue Gaston Berger, BP 4043, 18028 Bourges Cedex (France); Gitton, Jean-Michel, E-mail: Charles.De_Izarra@univ-orleans.f [College Littre, 10 rue Littre, Bourges (France)

    2010-07-15

    The goal of this work proposed for undergraduate students and teachers is the calibration of a tungsten filament lamp from electric measurements that are both simple and precise, allowing to determine the temperature of tungsten filament as a function of the current intensity. This calibration procedure was first applied to a conventional filament lamp (lamp used in automotive lighting) and then tested on a standard tungsten ribbon lamp. The calibration procedure developed was checked by determining the calibration point of the tungsten ribbon lamp with an accuracy of 2%. In addition, for low current intensity, it was observed that the temperature of the filament was not uniform; an explanation is proposed by considering a simple heat transfer model.

  20. FILAMENTATION INSTABILITY OF LASER BEAMS IN NONLOCAL NONLINEAR MEDIA

    Institute of Scientific and Technical Information of China (English)

    文双春; 范滇元

    2001-01-01

    The filamentation instability of laser beams propagating in nonlocal nonlinear media is investigated. It is shown that the filamentation instability can occur in weakly nonlocal self-focusing media for any degree of nonlocality, and in defocusing media for the input light intensity exceeding a threshold related to the degree of nonlocality. A linear stability analysis is used to predict the initial growth rate of the instability. It is found that the nonlocality tends to suppress filamentation instability in self-focusing media and to stimulate filamentation instability in self-defocusing media. Numerical simulations confirm the results of the linear stability analysis and disclose a recurrence phenomenon in nonlocal self-focusing media analogous to the Fermi-Pasta-Ulam problem.

  1. Health Risks Associated with Exposure to Filamentous Fungi

    Directory of Open Access Journals (Sweden)

    Mary Augustina Egbuta

    2017-07-01

    Full Text Available Filamentous fungi occur widely in the environment, contaminating soil, air, food and other substrates. Due to their wide distribution, they have medical and economic implications. Regardless of their use as a source of antibiotics, vitamins and raw materials for various industrially important chemicals, most fungi and filamentous fungi produce metabolites associated with a range of health risks, both in humans and in animals. The association of filamentous fungi and their metabolites to different negative health conditions in humans and animals, has contributed to the importance of investigating different health risks induced by this family of heterotrophs. This review aims to discuss health risks associated with commonly occurring filamentous fungal species which belong to genera Aspergillus, Penicillium and Fusarium, as well as evaluating their pathogenicity and mycotoxic properties.

  2. Tropomyosin diffusion over actin subunits facilitates thin filament assembly

    Science.gov (United States)

    Fischer, Stefan; Rynkiewicz, Michael J.; Moore, Jeffrey R.; Lehman, William

    2016-01-01

    Coiled-coil tropomyosin binds to consecutive actin-subunits along actin-containing thin filaments. Tropomyosin molecules then polymerize head-to-tail to form cables that wrap helically around the filaments. Little is known about the assembly process that leads to continuous, gap-free tropomyosin cable formation. We propose that tropomyosin molecules diffuse over the actin-filament surface to connect head-to-tail to partners. This possibility is likely because (1) tropomyosin hovers loosely over the actin-filament, thus binding weakly to F-actin and (2) low energy-barriers provide tropomyosin freedom for 1D axial translation on F-actin. We consider that these unique features of the actin-tropomyosin interaction are the basis of tropomyosin cable formation. PMID:26798831

  3. Motility patterns of filamentous sulfur bacteria, Beggiatoa spp

    DEFF Research Database (Denmark)

    Dunker, Rita; Røy, Hans; Kamp, Anja;

    2011-01-01

    was constructed based on our observations. The model was applied to virtual filaments in the oxygen- and sulfide-free zone of the sediment, which is a main habitat of Beggiatoa in the natural environment. The model predicts a long residence time of the virtual filament in the suboxic zone and explains why...... Beggiatoa accumulate high nitrate concentrations in internal vacuoles as an alternative electron acceptor to oxygen....

  4. Nucleus-associated intermediate filaments from chicken erythrocytes

    OpenAIRE

    1980-01-01

    Chicken erythrocyte nuclei prepared by isolation in isotonic KCl and Nonidet P-40 detergent were found to contain numerous attached filaments with a mean diameter of 11.0 nm. In polypeptide content and solubility properties, they resembled the vimentin type of intermediate filament found in cells of mesenchymal origin. Examination of their association with the nucleus suggests that more than a simple membrane attachment is involved.

  5. Scrape Off Layer profiles interpreted with filament dynamics

    CERN Document Server

    Militello, F

    2016-01-01

    A theoretical framework is developed to link the density profiles in the Scrape Off Layer (SOL) with the fluctuations (filaments) that generate them. The framework is based on the dynamics of independent filaments and their statistical behaviour and can be used to rigorously understand the mechanisms that lead to flattening and broadening of the SOL profiles as well as the radial increase of the relative fluctuation amplitude.

  6. Scrape off layer profiles interpreted with filament dynamics

    Science.gov (United States)

    Militello, F.; Omotani, J. T.

    2016-10-01

    A theoretical framework is developed to link the density profiles in the scrape off layer (SOL) with the fluctuations (filaments) that generate them. The framework is based on the dynamics of independent filaments and their statistical behaviour and can be used to rigorously understand the mechanisms that lead to flattening and broadening of the SOL profiles as well as the radial increase of the relative fluctuation amplitude.

  7. The Hβ Chromospheric Magnetic Field in a Quiescent Filament

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    We observed the line-of-sight magnetic field in the chromosphereandphotosphere of a large quiescent filament on the solar disk on September 6, 2001using the Solar Magnetic Field Telescope in Huairou Solar Observing Station. Thechromospheric and photospheric magnetograms together with Hβ filtergrams of thefilament were examined. The filament was located on the neutral line of the largescale longitudinal magnetic field in the photosphere and the chromosphere. Thelateral feet of the filament .were found to be related to magnetic structures with op-posite polarities. Two small lateral feet are linked to weak parasitic polarity. Thereis a negative magnetic structure in the photosphere under a break of the filament.At the location corresponding to the filament in the chromospheric magnetograms,the magnetic strength is found to be about 40-70 Gauss (measuring error about 39Gauss). The magnetic signal indicates the amplitude and orientation of the internalmagnetic field in the filament. We discuss several possible causes which may pro-duce such a measured signal. A twisted magnetic configuration inside the filamentis suggested .

  8. Force-velocity measurements of a few growing actin filaments.

    Directory of Open Access Journals (Sweden)

    Coraline Brangbour

    2011-04-01

    Full Text Available The polymerization of actin in filaments generates forces that play a pivotal role in many cellular processes. We introduce a novel technique to determine the force-velocity relation when a few independent anchored filaments grow between magnetic colloidal particles. When a magnetic field is applied, the colloidal particles assemble into chains under controlled loading or spacing. As the filaments elongate, the beads separate, allowing the force-velocity curve to be precisely measured. In the widely accepted Brownian ratchet model, the transduced force is associated with the slowing down of the on-rate polymerization. Unexpectedly, in our experiments, filaments are shown to grow at the same rate as when they are free in solution. However, as they elongate, filaments are more confined in the interspace between beads. Higher repulsive forces result from this higher confinement, which is associated with a lower entropy. In this mechanism, the production of force is not controlled by the polymerization rate, but is a consequence of the restriction of filaments' orientational fluctuations at their attachment point.

  9. Force-Velocity Measurements of a Few Growing Actin Filaments

    Science.gov (United States)

    Brangbour, Coraline; du Roure, Olivia; Helfer, Emmanuèle; Démoulin, Damien; Mazurier, Alexis; Fermigier, Marc; Carlier, Marie-France; Bibette, Jérôme; Baudry, Jean

    2011-01-01

    The polymerization of actin in filaments generates forces that play a pivotal role in many cellular processes. We introduce a novel technique to determine the force-velocity relation when a few independent anchored filaments grow between magnetic colloidal particles. When a magnetic field is applied, the colloidal particles assemble into chains under controlled loading or spacing. As the filaments elongate, the beads separate, allowing the force-velocity curve to be precisely measured. In the widely accepted Brownian ratchet model, the transduced force is associated with the slowing down of the on-rate polymerization. Unexpectedly, in our experiments, filaments are shown to grow at the same rate as when they are free in solution. However, as they elongate, filaments are more confined in the interspace between beads. Higher repulsive forces result from this higher confinement, which is associated with a lower entropy. In this mechanism, the production of force is not controlled by the polymerization rate, but is a consequence of the restriction of filaments' orientational fluctuations at their attachment point. PMID:21541364

  10. Filament Fragmentation in High-Mass Star Formation

    CERN Document Server

    Beuther, H; Johnston, K; Henning, Th; Hacar, A; Kainulainen, J T

    2015-01-01

    Aims: We resolve the length-scales for filament formation and fragmentation (res. <=0.1pc), in particular the Jeans length and cylinder fragmentation scale. Methods: We observed the prototypical high-mass star-forming filament IRDC18223 with the Plateau de Bure Interferometer (PdBI) in the 3.2mm continuum and N2H+(1-0) line emission in a ten field mosaic at a spatial resolution of ~4'' (~14000AU). Results: The dust continuum emission resolves the filament into a chain of at least 12 relatively regularly spaced cores. The mean separation between cores is ~0.40(+-0.18)pc. While this is approximately consistent with the fragmentation of an infinite, isothermal, gravitationally bound gas cylinder, a high mass-to-length ratio of M/l~1000M_sun/pc requires additional turbulent and/or magnetic support against radial collapse of the filament. The N2H+(1-0) data reveal a velocity gradient perpendicular to the main filament. Although rotation of the filament cannot be excluded, the data are also consistent with the m...

  11. Mid-infrared laser filaments in the atmosphere

    Science.gov (United States)

    Mitrofanov, A. V.; Voronin, A. A.; Sidorov-Biryukov, D. A.; Pugžlys, A.; Stepanov, E. A.; Andriukaitis, G.; Flöry, T.; Ališauskas, S.; Fedotov, A. B.; Baltuška, A.; Zheltikov, A. M.

    2015-01-01

    Filamentation of ultrashort laser pulses in the atmosphere offers unique opportunities for long-range transmission of high-power laser radiation and standoff detection. With the critical power of self-focusing scaling as the laser wavelength squared, the quest for longer-wavelength drivers, which would radically increase the peak power and, hence, the laser energy in a single filament, has been ongoing over two decades, during which time the available laser sources limited filamentation experiments in the atmosphere to the near-infrared and visible ranges. Here, we demonstrate filamentation of ultrashort mid-infrared pulses in the atmosphere for the first time. We show that, with the spectrum of a femtosecond laser driver centered at 3.9 μm, right at the edge of the atmospheric transmission window, radiation energies above 20 mJ and peak powers in excess of 200 GW can be transmitted through the atmosphere in a single filament. Our studies reveal unique properties of mid-infrared filaments, where the generation of powerful mid-infrared supercontinuum is accompanied by unusual scenarios of optical harmonic generation, giving rise to remarkably broad radiation spectra, stretching from the visible to the mid-infrared. PMID:25687621

  12. Formation of a solar Ha filament from orphan penumbrae

    CERN Document Server

    Buehler, D; van Noort, M; Solanki, S K

    2016-01-01

    The formation of an Ha filament in active region (AR) 10953 is described. Observations from the Solar Optical Telescope (SOT) aboard the Hinode satellite starting on 27th April 2007 until 1st May 2007 were analysed. 20 scans of the 6302A Fe I line pair recorded by SOT/SP were inverted using the SPINOR code. The inversions were analysed together with SOT/BFI G-band and Ca II H and SOT/NFI Ha observations. Following the disappearance of an initial Ha filament aligned along the polarity inversion line (PIL) of the AR, a new Ha filament formed in its place some 20 hours later, which remained stable for at least 1.5 days. The creation of the new Ha filament was driven by the ascent of horizontal magnetic fields from the photosphere into the chromosphere at three separate locations along the PIL. The magnetic fields at two of these locations were situated directly underneath the initial Ha filament and formed orphan penumbrae already aligned along the Ha filament channel. The 700 G orphan penumbrae were stable and ...

  13. Appearance of Dusty Filaments at Different Viewing Angles

    CERN Document Server

    Chira, R -A; Henning, Th; Kainulainen, J

    2016-01-01

    Context: In the last years, there have been many studies on the omnipresence and structures of filaments in star-forming regions, as well as their role in the process of star formation. Those filaments are normally identified as elongated fibres across the plane of the sky. But how would we detect filaments that are inclined? Aims: We aim to learn more about whether, and how, total column density or dust temperature change with respect to the line of sight. Such variations would enable observers to use dust observations to identify and study filaments at any inclination and gain more insight on the distribution and orientations of filaments within the Galactic plane. Methods: As a first step, we perform numerical calculations on simple cylindrical models to evaluate the influence of filament geometry on the average flux density. After that, we apply our three-dimensional Monte Carlo dust radiative transfer code on two models of star-forming regions and derive maps of effective total column density and dust te...

  14. SDC13 infrared dark clouds: Longitudinally collapsing filaments?

    CERN Document Server

    Peretto, N; André, Ph; Arzoumanian, D; Rivilla, V M; Bardeau, S; Puertas, S Duarte; Fernandez, J P Guzman; Lenfestey, C; Li, G -X; Olguin, F A; Röck, B R; de Villiers, H; Williams, J

    2013-01-01

    Formation of stars is now believed to be tightly linked to the dynamical evolution of interstellar filaments in which they form. In this paper we analyze the density structure and kinematics of a small network of infrared dark filaments, SDC13, observed in both dust continuum and molecular line emission with the IRAM 30m telescope. These observations reveal the presence of 18 compact sources amongst which the two most massive, MM1 and MM2, are located at the intersection point of the parsec-long filaments. The dense gas velocity and velocity dispersion observed along these filaments show smooth, strongly correlated, gradients. We discuss the origin of the SDC13 velocity field in the context of filament longitudinal collapse. We show that the collapse timescale of the SDC13 filaments (from 1 Myr to 4 Myr depending on the model parameters) is consistent with the presence of Class I sources in them, and argue that, on top of bringing more material to the centre of the system, collapse could generate additional k...

  15. Photospheric flows around a quiescent filament and CALAS first results .

    Science.gov (United States)

    Rondi, S.; Roudier, Th.; Molodij, G.; Bommier, V.; Malherbe, J. M.; Schmieder, B.; Meunier, N.; Rieutord, M.; Beigbeder., F.

    The horizontal photospheric flows below and around a filament are one of the components in the formation and evolution of filaments. Few studies have been done so far because this requires multiwalength time sequences with high spatial resolution. We present observations obtained in 2004 during the international JOP 178 campaign in which eleven instruments were involved, from space and ground based observatories. Several supergranulation cells are crossing the Polarity Inversion Line (PIL) allowing the transport of magnetic flux through the PIL, in particular the parasitic polarities. Before the filament eruptive phase, parasitic and normal polarities are swept by a continuous diverging horizontal flow located in the filament gap where the disappearance of the filament starts. In the future, observations at high spatial resolution on a large field-of-view would be very useful to study filaments, as they are very large structures. We also present the first images obtained with the use of our new 14 MPixel camera CALAS (CAmera for the LArge Scales of the Solar Surface) (10 arcmin× 6.7 arcmin) . These are the first large-scale and high-resolution images of the solar surface ever made.

  16. Large scale filaments associated with Milky Way spiral arms

    CERN Document Server

    Wang, Ke; Ginsburg, Adam; Walmsley, C Malcolm; Molinari, Sergio; Schisano, Eugenio

    2015-01-01

    The ubiquity of filamentary structure at various scales through out the Galaxy has triggered a renewed interest in their formation, evolution, and role in star formation. The largest filaments can reach up to Galactic scale as part of the spiral arm structure. However, such large scale filaments are hard to identify systematically due to limitations in identifying methodology (i.e., as extinction features). We present a new approach to directly search for the largest, coldest, and densest filaments in the Galaxy, making use of sensitive Herschel Hi-GAL data complemented by spectral line cubes. We present a sample of the 9 most prominent Herschel filaments, including 6 identified from a pilot search field plus 3 from outside the field. These filaments measure 37-99 pc long and 0.6-3.0 pc wide with masses (0.5-8.3)$\\times10^4 \\, M_\\odot$, and beam-averaged ($28"$, or 0.4-0.7 pc) peak H$_2$ column densities of (1.7-9.3)$\\times 10^{22} \\, \\rm{cm^{-2}}$. The bulk of the filaments are relatively cold (17-21 K), whi...

  17. Properties of Cosmological Filaments extracted from Eulerian Simulations

    CERN Document Server

    Gheller, Claudio; Favre, Jean; Brüggen, Marcus

    2015-01-01

    Using a new parallel algorithm implemented within the VisIt framework, we analysed large cosmological grid simulations to study the properties of baryons in filaments. The procedure allows us to build large catalogues with up to $\\sim 3 \\cdot 10^4$ filaments per simulated volume and to investigate the properties of cosmic filaments for very large volumes at high resolution (up to $300^3 ~\\rm Mpc^3$ simulated with $2048^3$ cells). We determined scaling relations for the mass, volume, length and temperature of filaments and compared them to those of galaxy clusters. The longest filaments have a total length of about $200 ~\\rm Mpc$ with a mass of several $10^{15} M_{\\odot}$. We also investigated the effects of different gas physics. Radiative cooling significantly modifies the thermal properties of the warm-hot-intergalactic medium of filaments, mainly by lowering their mean temperature via line cooling. On the other hand, powerful feedback from active galactic nuclei in surrounding halos can heat up the gas in ...

  18. Sympathetic Solar Filament Eruptions on 2015 March 15

    CERN Document Server

    Wang, Rui; Zimovets, Ivan; Hu, Huidong; Dai, Xinghua; Yang, Zhongwei

    2016-01-01

    The 2015 March 15 coronal mass ejection as one of the two that together drove the largest geomagnetic storm of solar cycle 24 so far was associated with sympathetic filament eruptions. We investigate the relations between the different filaments involved in the eruption. A surge-like small-scale filament motion is confirmed as the trigger that initiated the erupting filament with multi-wavelength observations and using a forced magnetic field extrapolation method. When the erupting filament moved to an open magnetic field region, it experienced an obvious acceleration process and was accompanied by a C-class flare and the rise of another larger filament that eventually failed to erupt. We measure the decay index of the background magnetic field, which presents a critical height of 118 Mm. Combining with a potential field source surface extrapolation method, we analyze the distributions of the large-scale magnetic field, which indicates that the open magnetic field region may provide a favorable condition for ...

  19. Geometrical and mechanical properties control actin filament organization.

    Directory of Open Access Journals (Sweden)

    Gaëlle Letort

    2015-05-01

    Full Text Available The different actin structures governing eukaryotic cell shape and movement are not only determined by the properties of the actin filaments and associated proteins, but also by geometrical constraints. We recently demonstrated that limiting nucleation to specific regions was sufficient to obtain actin networks with different organization. To further investigate how spatially constrained actin nucleation determines the emergent actin organization, we performed detailed simulations of the actin filament system using Cytosim. We first calibrated the steric interaction between filaments, by matching, in simulations and experiments, the bundled actin organization observed with a rectangular bar of nucleating factor. We then studied the overall organization of actin filaments generated by more complex pattern geometries used experimentally. We found that the fraction of parallel versus antiparallel bundles is determined by the mechanical properties of actin filament or bundles and the efficiency of nucleation. Thus nucleation geometry, actin filaments local interactions, bundle rigidity, and nucleation efficiency are the key parameters controlling the emergent actin architecture. We finally simulated more complex nucleation patterns and performed the corresponding experiments to confirm the predictive capabilities of the model.

  20. Filament transport, warm ions and erosion in ASDEX Upgrade L-modes

    Science.gov (United States)

    Birkenmeier, G.; Manz, P.; Carralero, D.; Laggner, F. M.; Fuchert, G.; Krieger, K.; Maier, H.; Reimold, F.; Schmid, K.; Dux, R.; Pütterich, T.; Willensdorfer, M.; Wolfrum, E.; The ASDEX Upgrade Team

    2015-03-01

    The dynamics of blob filaments are investigated in the scrape-off layer of ASDEX Upgrade by means of lithium beam emission spectroscopy. A comparison of the measurements in L-mode with a recently developed analytical blob model based on a drift-interchange-Alfvén fluid model indicates an influence of a finite ion temperature on the blob dynamics which has typically been neglected in other blob models. The blob dynamics agree well with the sheath-connected regime at lower plasma densities, and inertial effects play only a minor role. At higher densities, a transition into another regime with large blob amplitudes and increased transport is found. This points to a prominent role of blob transport at higher Greenwald fractions. On the basis of the measured blob properties, the erosion on plasma facing components is estimated. For pure deuterium plasmas, the high ion temperatures of blobs lead to a dominant erosion induced by blobs. However, if an impurity concentration of 1% is taken into account, the blob-induced erosion plays a minor role and background plasma parameters determine the total gross erosion.

  1. Electron Heating in a Relativistic, Weibel-Unstable Plasma

    CERN Document Server

    Kumar, Rahul; Gedalin, Michael

    2015-01-01

    The dynamics of two initially unmagnetized relativistic counter-streaming homogeneous ion-electron plasma beams are simulated in two dimensions using the particle-in-cell (PIC) method. It is shown that current filaments, which form due to the Weibel instability, develop a large scale longitudinal electric field in the direction opposite to the current carried by the filaments as predicted by theory. Fast moving ions in the current filaments decelerate due to this longitudinal electric field. The same longitudinal electric field, which is partially inductive and partially electrostatic, is identified as the main source of acceleration of electrons in the current filaments. The transverse electric field, though larger than the longitudinal one, is shown to play a smaller role in heating electrons, contrary to previous claims. It is found that, in 1D, the electrons become strongly magnetized and are \\textit{not} accelerated beyond their initial kinetic energy. Rather, the heating of the electrons is enhanced by ...

  2. Light-Induced Movements of Chloroplasts and Nuclei Are Regulated in Both Cp-Actin-Filament-Dependent and -Independent Manners in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Noriyuki Suetsugu

    Full Text Available Light-induced chloroplast movement and attachment to the plasma membrane are dependent on actin filaments. In Arabidopsis thaliana, the short actin filaments on the chloroplast envelope, cp-actin filaments, are essential for chloroplast movement and positioning. Furthermore, cp-actin-filament-mediated chloroplast movement is necessary for the strong-light-induced nuclear avoidance response. The proteins CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1, KINESIN-LIKE PROTEIN FOR ACTIN-BASED CHLOROPLAST MOVEMENT 1 (KAC1 and KAC2 are required for the generation and/or maintenance of cp-actin filaments in Arabidopsis. In land plants, CHUP1 and KAC family proteins play pivotal roles in the proper movement of chloroplasts and their attachment to the plasma membrane. Here, we report similar but distinct phenotypes in chloroplast and nuclear photorelocation movements between chup1 and kac1kac2 mutants. Measurement of chloroplast photorelocation movement indicated that kac1kac2, but not chup1, exhibited a clear strong-light-induced increase in leaf transmittance changes. The chloroplast movement in kac1kac2 depended on phototropin 2, CHUP1 and two other regulators for cp-actin filaments, PLASTID MOVEMENT IMPAIRED 1 and THRUMIN 1. Furthermore, kac1kac2 retained a weak but significant nuclear avoidance response although chup1 displayed a severe defect in the nuclear avoidance response. The kac1kac2chup1 triple mutant was completely defective in both chloroplast and nuclear avoidance responses. These results indicate that CHUP1 and the KACs function somewhat independently, but interdependently mediate both chloroplast and nuclear photorelocation movements.

  3. Light-Induced Movements of Chloroplasts and Nuclei Are Regulated in Both Cp-Actin-Filament-Dependent and -Independent Manners in Arabidopsis thaliana.

    Science.gov (United States)

    Suetsugu, Noriyuki; Higa, Takeshi; Gotoh, Eiji; Wada, Masamitsu

    2016-01-01

    Light-induced chloroplast movement and attachment to the plasma membrane are dependent on actin filaments. In Arabidopsis thaliana, the short actin filaments on the chloroplast envelope, cp-actin filaments, are essential for chloroplast movement and positioning. Furthermore, cp-actin-filament-mediated chloroplast movement is necessary for the strong-light-induced nuclear avoidance response. The proteins CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1), KINESIN-LIKE PROTEIN FOR ACTIN-BASED CHLOROPLAST MOVEMENT 1 (KAC1) and KAC2 are required for the generation and/or maintenance of cp-actin filaments in Arabidopsis. In land plants, CHUP1 and KAC family proteins play pivotal roles in the proper movement of chloroplasts and their attachment to the plasma membrane. Here, we report similar but distinct phenotypes in chloroplast and nuclear photorelocation movements between chup1 and kac1kac2 mutants. Measurement of chloroplast photorelocation movement indicated that kac1kac2, but not chup1, exhibited a clear strong-light-induced increase in leaf transmittance changes. The chloroplast movement in kac1kac2 depended on phototropin 2, CHUP1 and two other regulators for cp-actin filaments, PLASTID MOVEMENT IMPAIRED 1 and THRUMIN 1. Furthermore, kac1kac2 retained a weak but significant nuclear avoidance response although chup1 displayed a severe defect in the nuclear avoidance response. The kac1kac2chup1 triple mutant was completely defective in both chloroplast and nuclear avoidance responses. These results indicate that CHUP1 and the KACs function somewhat independently, but interdependently mediate both chloroplast and nuclear photorelocation movements.

  4. THE RAPID FORMATION OF A FILAMENT CAUSED BY MAGNETIC RECONNECTION BETWEEN TWO SETS OF DARK THREADLIKE STRUCTURES

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Bo; Jiang, Yunchun; Yang, Jiayan; Yu, Shunping; Xu, Zhe, E-mail: boyang@ynao.ac.cn, E-mail: yjy@ynao.ac.cn [Yunnan Observatories, Chinese Academy of Sciences, P.O. Box 110, Kunming 650216 (China)

    2016-01-01

    Taking advantage of the high spatiotemporal resolution observations from the Atmospheric Imaging Assembly (AIA) and the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we present rare observations of the rapid formation of a filament caused by magnetic reconnection between two sets of dark threadlike structures. The two sets of dark threadlike structures belong to distinct flux systems with their adjacent ends anchored in an opposite-polarity magnetic field region, where the calculated photospheric velocity field shows that converging flows dominate there. Due to the converging flows, opposite-polarity magnetic flux converged and then canceled, leading to the formation of extreme ultraviolet (EUV) brightening that spread in opposite directions along the spine of the dark threadlike structures. Meanwhile, very weak remote brightening in the other terminals of the dark threadlike structures, as well as EUV loops, which rooted in the opposite-polarity magnetic field region, appeared. In addition, all of the AIA Fe line observations reveal that a flux rope was formed and underwent a rolling motion during the fadeaway of the EUV brightening. Soon after, as the EUV brightening disappeared, a filament that is very likely composed of two sets of intertwined dark threadlike structures was formed. Via differential emission measure (EM) analysis, it is found that both the EM and temperature of the plasma around the flux-canceling site increased during the brightening, implying that there, magnetic reconnection may occur to heat the plasma. These observations provide evidence that the filament is formed by magnetic reconnection associated with flux convergence and cancellation, and the magnetic structure of the filament is most likely a flux rope.

  5. Generation of low-temperature plasma by low-pressure arcs for synthesis of nitride coatings

    Science.gov (United States)

    Krysina, O. V.; Koval, N. N.; Lopatin, I. V.; Shugurov, V. V.; Kovalsky, S. S.

    2016-01-01

    Experiments were performed to study gas, metal, and mixed metal-gas plasmas. The plasmas were generated with the use of an arc evaporator and a gas-plasma source with a hot filament and hollow cathode that were operated independently or simultaneously. It has been revealed that the arc current of gas-plasma source affects the parameters of the metal-gas plasma and the element concentrations in the coatings. It has been demonstrated that the characteristics of the nitride coatings produced by plasma-assisted vacuum-arc deposition can be controlled by varying the parameters of the arc in the gas-plasma source.

  6. Attractive interactions among intermediate filaments determine network mechanics in vitro.

    Directory of Open Access Journals (Sweden)

    Paul Pawelzyk

    Full Text Available Mechanical and structural properties of K8/K18 and vimentin intermediate filament (IF networks have been investigated using bulk mechanical rheometry and optical microrheology including diffusing wave spectroscopy and multiple particle tracking. A high elastic modulus G0 at low protein concentration c, a weak concentration dependency of G0 (G0 ∼ c(0.5 ± 0.1 and pronounced strain stiffening are found for these systems even without external crossbridgers. Strong attractive interactions among filaments are required to maintain these characteristic mechanical features, which have also been reported for various other IF networks. Filament assembly, the persistence length of the filaments and the network mesh size remain essentially unaffected when a nonionic surfactant is added, but strain stiffening is completely suppressed, G0 drops by orders of magnitude and exhibits a scaling G0 ∼ c(1.9 ± 0.2 in agreement with microrheological measurements and as expected for entangled networks of semi-flexible polymers. Tailless K8Δ/K18ΔT and various other tailless filament networks do not exhibit strain stiffening, but still show high G0 values. Therefore, two binding sites are proposed to exist in IF networks. A weaker one mediated by hydrophobic amino acid clusters in the central rod prevents stretched filaments between adjacent cross-links from thermal equilibration and thus provides the high G0 values. Another strong one facilitating strain stiffening is located in the tail domain with its high fraction of hydrophobic amino acid sequences. Strain stiffening is less pronounced for vimentin than for K8/K18 due to electrostatic repulsion forces partly compensating the strong attraction at filament contact points.

  7. Plasma turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Horton, W. [Univ. of Texas, Austin, TX (United States). Inst. for Fusion Studies; Hu, G. [Globalstar LP, San Jose, CA (United States)

    1998-07-01

    The origin of plasma turbulence from currents and spatial gradients in plasmas is described and shown to lead to the dominant transport mechanism in many plasma regimes. A wide variety of turbulent transport mechanism exists in plasmas. In this survey the authors summarize some of the universally observed plasma transport rates.

  8. Robustness of the filamentation instability in arbitrarily oriented magnetic field: Full 3D calculation

    CERN Document Server

    Bret, Antoine

    2014-01-01

    The filamentation (Weibel) instability plays a key role in the formation of collisionless shocks which are thought to produce Gamma-Ray-Bursts and High-Energy-Cosmic-Rays in astrophysical environments. While it has been known for long that a flow-aligned magnetic field can completely quench the instability, it was recently proved in 2D that in the cold regime, such cancelation is possible if and only if the field is perfectly aligned. Here, this result is finally extended to a 3D geometry. Calculations are conducted for symmetric and asymmetric counter-streaming relativistic plasma shells. 2D results are retrieved in 3D: the instability can never be completely canceled for an oblique magnetic field. In addition, the maximum growth-rate is always larger for wave vectors lying in the plan defined by the flow and the oblique field. On the one hand, this bears consequences on the orientation of the generated filaments. On the other hand, it certifies 2D simulations of the problem can be performed without missing ...

  9. Alma Observations of Massive Molecular Gas Filaments Encasing Radio Bubbles in the Phoenix Cluster

    Science.gov (United States)

    Russell, H. R.; McDonald, M.; McNamara, B. R.; Fabian, A. C.; Nulsen, P. E. J.; Bayliss, M. B.; Benson, B. A.; Brodwin, M.; Carlstrom, J. E.; Edge, A. C.; Hlavacek-Larrondo, J.; Marrone, D. P.; Reichardt, C. L.; Vieira, J. D.

    2017-02-01

    We report new ALMA observations of the CO(3-2) line emission from the 2.1+/- 0.3× {10}10 {M}ȯ molecular gas reservoir in the central galaxy of the Phoenix cluster. The cold molecular gas is fueling a vigorous starburst at a rate of 500{--}800 {M}ȯ {{yr}}-1 and powerful black hole activity in the forms of both intense quasar radiation and radio jets. The radio jets have inflated huge bubbles filled with relativistic plasma into the hot, X-ray atmospheres surrounding the host galaxy. The ALMA observations show that extended filaments of molecular gas, each 10{--}20 {kpc} long with a mass of several billion solar masses, are located along the peripheries of the radio bubbles. The smooth velocity gradients and narrow line widths along each filament reveal massive, ordered molecular gas flows around each bubble, which are inconsistent with gravitational free-fall. The molecular clouds have been lifted directly by the radio bubbles, or formed via thermal instabilities induced in low-entropy gas lifted in the updraft of the bubbles. These new data provide compelling evidence for close coupling between the radio bubbles and the cold gas, which is essential to explain the self-regulation of feedback. The very feedback mechanism that heats hot atmospheres and suppresses star formation may also paradoxically stimulate production of the cold gas required to sustain feedback in massive galaxies.

  10. Magnetic Field Strength in an Intermediate-velocity Ionized Filament in the First Galactic Quadrant

    Science.gov (United States)

    Stil, J. M.; Hryhoriw, A.

    2016-08-01

    We investigate the magnetic field in an intermediate-velocity filament for which the Hα intensity in the WHAM survey correlates with excess Faraday rotation of extragalactic radio sources over the length of the filament from b ≈ 20° to b ≈ 55°. The density-weighted mean magnetic field is 2.8 +/- 0.8 μ {{G}}, derived from rotation measures and an empirical relation between Hα emission measure and dispersion measure from Berkhuijsen et al. In view of the uncertainties in the derived magnetic field strength, we propose an alternative use of the available data, rotation measure, and emission measure, to derive a lower limit to the Alfvén speed, weighted by electron density {n}e3/2. We find lower limits to the Alfvén speed that are comparable to or larger than the sound speed in a {10}4 {{K}} plasma, and conclude that the magnetic field is dynamically important. We discuss the role of intermediate-velocity gas as a locus of Faraday rotation in the interstellar medium, and propose that this lower limit to the Alfvén speed may also be applicable to Faraday rotation by galaxy clusters.

  11. Magnetic field strength in an intermediate-velocity ionized filament in the First Galactic Quadrant

    CERN Document Server

    Stil, Jeroen M

    2016-01-01

    We investigate the magnetic field in an intermediate-velocity filament for which the H$\\alpha$ intensity in the WHAM survey correlates with excess Faraday rotation of extragalactic radio sources over the length of the filament from b ~ 20 degr. to b ~ 55 degr. The density-weighted mean magnetic field is 2.8 +/- 0.8 microgauss, derived from rotation measures and an empirical relation between H-alpha emission measure and dispersion measure from Berkhuijsen et al. (2006). In view of the uncertainties in the derived magnetic field strength, we propose an alternative use of the available data, rotation measure and emission measure, to derive a lower limit to the Alfven speed, weighted by electron density n_e^1.5. We find lower limits to the Alfven speed that are comparable to, or larger than the sound speed in a 10^4 K plasma, and conclude that the magnetic field is dynamically important. We discuss the role of intermediate-velocity gas as a locus of Faraday rotation in the interstellar medium, and propose this lo...

  12. ALMA observations of massive molecular gas filaments encasing radio bubbles in the Phoenix cluster

    CERN Document Server

    Russell, H R; McNamara, B R; Fabian, A C; Nulsen, P E J; Bayliss, M B; Benson, B A; Brodwin, M; Carlstrom, J E; Edge, A C; Hlavacek-Larrondo, J; Marrone, D P; Reichardt, C L; Vieira, J D

    2016-01-01

    We report new ALMA observations of the CO(3-2) line emission from the $2.7\\pm0.4\\times10^{10}\\rm\\thinspace M_{\\odot}$ molecular gas reservoir in the central galaxy of the Phoenix cluster. The cold molecular gas is fuelling a vigorous starburst at a rate of $500-800\\rm\\thinspace M_{\\odot}\\rm\\; yr^{-1}$ and powerful black hole activity in the form of both intense quasar radiation and radio jets. The radio jets have inflated huge bubbles filled with relativistic plasma into the hot, X-ray atmospheres surrounding the host galaxy. The ALMA observations show that extended filaments of molecular gas, each $10-20\\rm\\; kpc$ long with a mass of several billion solar masses, are located along the peripheries of the radio bubbles. The smooth velocity gradients and narrow line widths along each filament reveal massive, ordered molecular gas flows around each bubble, which are inconsistent with gravitational free-fall. The molecular clouds have been lifted directly by the radio bubbles, or formed via thermal instabilities ...

  13. Plasma scale-length effects on electron energy spectra in high-irradiance laser plasmas

    Science.gov (United States)

    Culfa, O.; Tallents, G. J.; Rossall, A. K.; Wagenaars, E.; Ridgers, C. P.; Murphy, C. D.; Dance, R. J.; Gray, R. J.; McKenna, P.; Brown, C. D. R.; James, S. F.; Hoarty, D. J.; Booth, N.; Robinson, A. P. L.; Lancaster, K. L.; Pikuz, S. A.; Faenov, A. Ya.; Kampfer, T.; Schulze, K. S.; Uschmann, I.; Woolsey, N. C.

    2016-04-01

    An analysis of an electron spectrometer used to characterize fast electrons generated by ultraintense (1020W cm-2 ) laser interaction with a preformed plasma of scale length measured by shadowgraphy is presented. The effects of fringing magnetic fields on the electron spectral measurements and the accuracy of density scale-length measurements are evaluated. 2D EPOCH PIC code simulations are found to be in agreement with measurements of the electron energy spectra showing that laser filamentation in plasma preformed by a prepulse is important with longer plasma scale lengths (>8 μ m ).

  14. Coherent structures in the boundary plasma of EAST Tokamak

    DEFF Research Database (Denmark)

    Yan, Ning

    filaments in the SOL or slightly inside the separatrix. It is observed that the topological configuration of density and potential in the ELM filaments deviate from each other. Furthermore, isolated electromagnetic filaments have been clearly identified during the type-I-like ELMs. They propagate radially......In recent years, with the application of fast camera in fusion plasma, as well as other diagnostic of spatial-temporal resolution such as Langmuir probe, it has become generally clear that the turbulence transport is mostly dominant by cross-field propagation of coherent structures, namely blobs...... turbulence-simulation code based on the interchange instability as the main drive for the turbulence and structure motion in the scrape-off layer (SOL) plasma, with the input parameters from the EAST experiments. The simulations successfully reproduce the statistical characteristics of the SOL turbulence...

  15. Dynamic Star Formation in the Massive DR21 Filament

    Energy Technology Data Exchange (ETDEWEB)

    Schneider, N.; /Saclay; Csengeri, T.; /Saclay; Bontemps, S.; /OASU, Floirac; Motte, F.; /Saclay; Simon, R.; /Cologne U.; Hennebelle, P.; /Paris Observ.; Federrath, C.; /ZAH, Heidelberg; Klessen, R.; /ZAH, Heidelberg /KIPAC, Menlo Park

    2010-08-25

    The formation of massive stars is a highly complex process in which it is unclear whether the star-forming gas is in global gravitational collapse or an equilibrium state supported by turbulence and/or magnetic fields. By studying one of the most massive and dense star-forming regions in the Galaxy at a distance of less than 3 kpc, i.e. the filament containing the well-known sources DR21 and DR21(OH), we attempt to obtain observational evidence to help us to discriminate between these two views. We use molecular line data from our {sup 13}CO 1 {yields} 0, CS 2 {yields} 1, and N{sub 2}H{sup +} 1 {yields} 0 survey of the Cygnus X region obtained with the FCRAO and CO, CS, HCO{sup +}, N{sub 2}H{sup +}, and H{sub 2}CO data obtained with the IRAM 30m telescope. We observe a complex velocity field and velocity dispersion in the DR21 filament in which regions of the highest column-density, i.e., dense cores, have a lower velocity dispersion than the surrounding gas and velocity gradients that are not (only) due to rotation. Infall signatures in optically thick line profiles of HCO{sup +} and {sup 12}CO are observed along and across the whole DR21 filament. By modelling the observed spectra, we obtain a typical infall speed of {approx}0.6 km s{sup -1} and mass accretion rates of the order of a few 10{sup -3} M{sub {circle_dot}} yr{sup -1} for the two main clumps constituting the filament. These massive clumps (4900 and 3300 M{sub {circle_dot}} at densities of around 10{sup 5} cm{sup -3} within 1 pc diameter) are both gravitationally contracting. The more massive of the clumps, DR21(OH), is connected to a sub-filament, apparently 'falling' onto the clump. This filament runs parallel to the magnetic field. Conclusions. All observed kinematic features in the DR21 filament (velocity field, velocity dispersion, and infall), its filamentary morphology, and the existence of (a) sub-filament(s) can be explained if the DR21 filament was formed by the convergence of flows

  16. Disappearance of a coronal hole induced by a filament activation

    CERN Document Server

    Lin, Ma; Xiao-Li, Yan; Zhi-Ke, Xue

    2014-01-01

    We present a rare observation of direct magnetic interaction between an activating filament and a coronal hole (CH). The filament was a quiescent one located at the northwest of the CH. It underwent a nonradial activation, during which filament material constantly fell and intruded into the CH. As a result, the CH was clearly destroyed by the intrusion. Brightenings appeared at the boundaries and in the interior of the CH, meanwhile, its west boundaries began to retreat and the area gradually shrank. It is noted that the CH went on shrinking after the end of the intrusion and finally disappeared entirely. Following the filament activation, three coronal dimmings (D1-D3) were formed, among which D1 and D2 persisted throughout the complete disappearance of the CH. The derived coronal magnetic configuration shows that the filament was located below an extended loop system which obviously linked D1 to D2. By comparison with this result of extrapolation, our observations imply that the interaction between the fila...

  17. Rapid Formation and Disappearance of a Filament Barb

    Science.gov (United States)

    Joshi, Anand D.; Srivastava, Nandita; Mathew, Shibu K.; Martin, Sara F.

    2013-11-01

    We present observations of an activated quiescent filament obtained in Hα from the high-resolution Dutch Open Telescope (DOT) on 20 August 2010. The filament developed a barb in 10 min, which disappeared within the next 35 min. A data set from the DOT spanning 2 h was used to analyse this event. Line-of-sight velocity maps were constructed from the Doppler images, which reveal flows in filament spine during this period. Photospheric magnetograms were used from the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamics Observatory (SDO) to determine the changes in magnetic flux in the region surrounding the barb location. The analysis shows flows in the filament spine towards the barb location preceding its formation, and flows in the barb towards the spine during its disappearance. Magnetograms reveal patches of minority polarity flux close to the end of the barb at its greatest elongation. The flows in the spine and barbs are along numerous threads that compose these typical filament structures. The flows are consistent with field-aligned threads and demonstrate that the replacement time of the mass in barbs, and by inference, in the spine is very rapid.

  18. Manipulation of flow around bluff bodies by flexible slender filaments

    Science.gov (United States)

    Omidyeganeh, Mohammad; Pinelli, Alfredo

    2016-11-01

    Manipulation of bluff bodies wakes to control the intensity of fluid forces and the induced solid vibrations is of paramount importance. A biomimetic passive control based on the use of flexible slender appendages protruding from the body into the separated region has shown promising achievements in drag reduction and moderating force fluctuations. The present research aimed at understating and optimizing the physical properties and the arrangement of elongated flexible filaments to delay the 3D transition of the wake in terms of Reynolds number, mean drag reduction, and mitigation of the force fluctuations. The numerical campaign unveiled the role of flexural stiffness of the filaments: matching the natural frequency with the vortex shedding frequency enhances the mixing at the lee side. However, softer filaments (i.e. larger time scales) lock-in on either side of mid plane breaking the symmetry of the flow field (inducing a net lift force). In addition to 2D effects, the presence of filaments can interfere with the 3D bifurcation process resulting in a delay of the spanwise destabilization of the wake. The most effective parameter for this transitional interference is the spacing between filaments that should be smaller than the wavelength of the dominant 3D unstable mode.

  19. Semiflexible filament networks viewed as fluctuating beam frames

    Science.gov (United States)

    Su, Tianxiang; Purohit, Prashant

    2012-02-01

    We present a new method combining structural and statistical mechanics to study the entropic elasticity of semiflexible filament networks. We view a filament network as a frame structure and use structural mechanics to determine its static equilibrium configuration under applied loads in the first step. To account for thermal motion around this static equilibrium state, we then approximate the potential energy of the deformed frame structure up to the second order in kinematic variables and obtaina deformation-dependent stiffness matrix characterizing the flexibility of the network. Using statistical mechanics, we then evaluate the partition function, free energy and thermo-mechanical properties of the network in terms of the stiffness matrix. We show that penalty methods commonly used in finite elements to account for constraints, are applicable even when statistical and structural mechanics are combined in our method. We apply our framework to understand the expansion, shear, uniaxial tension and compression behavior of some simple filament networks. We are able to capture the stress-stiffening behavior due to filament reorientation and stretching out of thermal fluctuations, as well as the reversible stress-softening behavior due to filament buckling.

  20. Local stability of a gravitating filament: a dispersion relation

    CERN Document Server

    Freundlich, Jonathan; Combes, Françoise

    2014-01-01

    Filamentary structures are ubiquitous in astrophysics and are observed at various scales. On a cosmological scale, matter is usually distributed along filaments, and filaments are also typical features of the interstellar medium. Within a cosmic filament, matter can contract and form galaxies, whereas an interstellar gas filament can clump into a series of bead-like structures which can then turn into stars. To investigate the growth of such instabilities, we derive a local dispersion relation for an idealized self-gravitating filament, and study some of its properties. Our idealized picture consists of an infinite self-gravitating and rotating cylinder with pressure and density related by a polytropic equation of state. We assume no specific density distribution, treat matter as a fluid, and use hydrodynamics to derive the linearized equations that govern the local perturbations. We obtain a dispersion relation for axisymmetric perturbations and study its properties in the (k_R, k_z) phase space, where k_R a...

  1. Simultaneous longitudinal and transverse oscillation in an active filament

    CERN Document Server

    Pant, V; Yuan, D; Banerjee, D; Srivastava, A K; Shen, Y

    2016-01-01

    We report on the co-existence of longitudinal and transverse oscillations in an active filament. On March 15$^{th}$ 2013, a M1.1 class flare was observed in the active region AR 11692. A CME was found to be associated with the flare. {The CME generated a shock wave that triggered the oscillations in a nearby filament}, situated at the south-west of the active region as observed from National Solar Observatory (NSO)\\textit{Global Oscillation Network Group}(GONG) H$\\alpha$ images. In this work we report the longitudinal oscillations in the two ends of the filament, co-existing with the transverse oscillations. We propose a scenario in which {an} incoming shock wave hits the filament obliquely and triggers both longitudinal and transverse oscillations. Using the observed parameters, we estimate the lower limit of the magnetic field strength. We use simple pendulum model with gravity as the restoring force to estimate the radius of curvature. We also calculate the mass accretion rate which causes the filament mot...

  2. 2-D studies of Relativistic electron beam plasma instabilities in an inhomogeneous plasma

    CERN Document Server

    Shukla, Chandrashekhar; Patel, Kartik

    2015-01-01

    Relativistic electron beam propagation in plasma is fraught with several micro instabilities like two stream, filamentation etc., in plasma. This results in severe limitation of the electron transport through a plasma medium. Recently, however, there has been an experimental demonstration of improved transport of Mega Ampere of electron currents (generated by the interaction of intense laser with solid target) in a carbon nanotube structured solid target [Phys. Rev Letts. 108, 235005 (2012)]. This then suggests that the inhomogeneous plasma (created by the ionization of carbon nano tube structured target) helps in containing the growth of the beam plasma instabilities. This manuscript addresses this issue with the help of a detailed analytical study and simulations with the help of 2-D Particle - In - Cell code. The study conclusively demonstrates that the growth rate of the dominant instability in the 2-D geometry decreases when the plasma density is chosen to be inhomogeneous, provided the scale length 1/ks...

  3. Characterization of an integrally wound tungsten and aluminum filament for physical vapor deposition

    Science.gov (United States)

    Goble, William; Ortiz, Ricardo

    2016-07-01

    As part of the effort to increase the reliability of the MMT Observatory (MMTO) 6.5m Primary Mirror Coating System, the specified filament has changed from a configuration in which the aluminum charge is hand wound around a tungsten filament to a configuration in which the aluminum is integrally wound with the tungsten at the time of filament manufacture. In the MMTO configuration, this filament consists of the three strands of tungsten wire and one strand of aluminum wire. In preparation of a full system test utilizing two hundred filaments fired simultaneously, an extensive testing program was undertaken to characterize these filaments using a four filament configuration in the MMTO small coating chamber (0.5m) and then a forty filament configuration in the University of Arizona Steward Observatory coating chamber (2m). The testing using the smaller coating chambers has shown these filaments provide very predicable coatings from test to test, and with the proper heating profile, these filaments greatly reduce the likelihood of aluminum drips. The initial filament design was modified during the course of testing by shortening the unwound filament length to closer match the aluminum load required in the MMTO coating chamber. This change increased the aluminum deposition rates without increasing the power delivered of the filament power supplies (commercial welders). Filament power levels measured at the vacuum chamber feed throughs, currents, and deposition rates from multiple coating tests, including a full system test, are presented.

  4. Shock Formation in Electron-Ion Plasmas: Mechanism and Timing

    Science.gov (United States)

    Bret, Antoine; Stockem Novo, Anne; Ricardo, Fonseca; Luis, Silva

    2016-10-01

    We analyze the formation of a collisionless shock in electron-ion plasmas in theory and simulations. In initially un-magnetized relativistic plasmas, such shocks are triggered by the Weibel instability. While in pair plasmas the shock starts forming right after the instability saturates, it is not so in electron-ion plasmas because the Weibel filaments at saturation are too small. An additional merging phase is therefore necessary for them to efficiently stop the flow. We derive a theoretical model for the shock formation time, taking into account filament merging in the nonlinear phase of the Weibel instability. This process is much slower than in electron-positron pair shocks, and so the shock formation is longer by a factor proportional to √{mi /me } ln(mi /me).

  5. Filamentation of an annular laser beam with a vortex phase dislocation in fused silica

    Science.gov (United States)

    Vasil'ev, E. V.; Shlenov, S. A.

    2016-11-01

    The filamentation of a femtosecond laser pulse in fused silica has been numerically investigated for the case of an annular beam with a phase singularity at a wavelength of 800 {\\text{nm}}. The spatiotemporal propagation dynamics of the pulse and the transformation of its frequency-angular spectra are analysed. It is shown that a tubular structure with a radius of 3 - 4 \\unicode{956}{\\text{m}}, peak intensity of about 2.4 × 1013 {\\text{W cm}}-2, and maximum plasma density on the order of 1020 {\\text{cm}}-3 is formed in the nonlinear focus; the length of this structure significantly exceeds the waist length in the linear case. The results of the analysis are compared with the data obtained for an annular beam free of phase dislocations and for a Gaussian beam.

  6. Plasma harmonics

    CERN Document Server

    Ganeev, Rashid A

    2014-01-01

    Preface; Why plasma harmonics? A very brief introduction Early stage of plasma harmonic studies - hopes and frustrations New developments in plasma harmonics studies: first successes Improvements of plasma harmonics; Theoretical basics of plasma harmonics; Basics of HHG Harmonic generation in fullerenes using few-cycle pulsesVarious approaches for description of observed peculiarities of resonant enhancement of a single harmonic in laser plasmaTwo-colour pump resonance-induced enhancement of odd and even harmonics from a tin plasmaCalculations of single harmonic generation from Mn plasma;Low-o

  7. Filamentous hydrous ferric oxide biosignatures in a pipeline carrying acid mine drainage at Iron Mountain Mine, California

    Science.gov (United States)

    Williams, Amy J.; Alpers, Charles N.; Sumner, Dawn Y.; Campbell, Kate M.

    2017-01-01

    A pipeline carrying acidic mine effluent at Iron Mountain, CA, developed Fe(III)-rich precipitate caused by oxidation of Fe(II)aq. The native microbial community in the pipe included filamentous microbes. The pipe scale consisted of microbial filaments, and schwertmannite (ferric oxyhydroxysulfate, FOHS) mineral spheres and filaments. FOHS filaments contained central lumina with diameters similar to those of microbial filaments. FOHS filament geometry, the geochemical environment, and the presence of filamentous microbes suggest that FOHS filaments are mineralized microbial filaments. This formation of textural biosignatures provides the basis for a conceptual model for the development and preservation of biosignatures in other environments.

  8. Actin filaments growing against a barrier with fluctuating shape

    CERN Document Server

    Sadhu, Raj Kumar

    2016-01-01

    We study force generation by a set of parallel actin filaments growing against a non-rigid obstacle, in presence of an external load. The filaments polymerize by either moving the whole obstacle, with a large energy cost, or by causing local distortion in its shape which costs much less energy. The non-rigid obstacle also has local thermal fluctuations due to which its shape can change with time and we describe this using fluctuations in the height profile of a one dimensional interface with Kardar-Parisi-Zhang dynamics. We find the shape fluctuations of the barrier strongly affects the force generation mechanism. The qualitative nature of the force-velocity curve is crucially determined by the relative time-scale of filament and barrier dynamics. The height profile of the barrier also shows interesting variation with the external load. Our analytical calculation within mean-field theory shows reasonable agreement with our simulation results.

  9. Opportunistic filamentous mycoses: aspergillosis, mucormycosis, phaeohyphomycosis and hyalohyphomycosis.

    Science.gov (United States)

    Perusquía-Ortiz, Ana María; Vázquez-González, Denisse; Bonifaz, Alexandro

    2012-09-01

    Opportunistic filamentous mycoses are widely distributed all over the world. They are rarely observed in Europe but are common in developing countries. The most common are the aspergilloses (due to Aspergillus spp.) mostly in neutropenia and immunosuppression; the mucormycoses characterized by rapid progression in patients with diabetic ketoacidosis; the phaeohyphomycoses due to pigmented fungi causing either a mild superficial or a very serious deep disease and the hyalohyphomycoses due to hyaline filamentous fungi (Fusarium spp., Pseudallescheria spp., Scopulariopsis spp.). Cutaneous manifestations are usually secondary to dissemination from pulmonary or visceral disease; primary cases are less frequent and due to direct inoculation into the skin. We review epidemiological, clinical, diagnostic, and therapeutic data on the four most important opportunistic filamentous mycoses: aspergillosis, mucormycosis, phaeohyphomycosis and hyalohyphomycosis.

  10. Undulatory locomotion of finite filaments: lessons from C. elegans

    CERN Document Server

    Berman, R; Sznitman, J; Leshansky, A

    2013-01-01

    Undulatory swimming is a widespread propulsion strategy adopted by many small-scale organisms including various single-cell eukaryotes and nematodes. In this work, we report a comprehensive study of undulatory locomotion of a finite filament using (i) approximate resistive force theory (RFT) assuming a local nature of hydrodynamic interaction between the filament and the surrounding viscous liquid, and (ii) particle-based numerical computations taking into account the intra-filament hydrodynamic interaction. Using the ubiquitous model of a propagating sinusoidal waveform, we identify the limit of applicability of the RFT and determine the optimal propulsion gait in terms of (i) swimming distance per period of undulation and (ii) hydrodynamic propulsion efficiency. The occurrence of the optimal swimming gait maximizing hydrodynamic efficiency at finite wavelength in particle-based computations diverges from the prediction of the RFT. To compare the model swimmer powered by sine wave undulations to biological u...

  11. Filament Discharge Phenomena in Fingerprint Acquisition by Dielectric Barrier Discharge

    Institute of Scientific and Technical Information of China (English)

    WENG Ming; XU Weijun; LIU Qiang

    2007-01-01

    In this paper, the dielectric barrier discharge fingerprint acquisition technique is introduced. The filament discharge phenomena were observed in the process of fingerprint acquisition. The filament discharge reduced the quality of fingerprint images. Obviously, it was necessary to eliminate streamer discharges in order to get good fingerprint images. The streamer discharge was considered to be the cause of the filament discharge in the experiment. The relationship between the critical electric field and the discharge gap was calculated with the Raether's model of streamer discharge. The calculated results and our experiment proved that it would be difficult for the streamer discharge to occur when the discharge gap was narrow. With a narrow discharge gap, the discharge was homogeneous, and the fingerprint images were clear and large in area. The images obtained in the experiment are very suitable for fingerprint identification as they contain more information.

  12. Intermediate filament transcription in astrocytes is repressed by proteasome inhibition

    Science.gov (United States)

    Middeldorp, Jinte; Kamphuis, Willem; Sluijs, Jacqueline A.; Achoui, Dalila; Leenaars, Cathalijn H. C.; Feenstra, Matthijs G. P.; van Tijn, Paula; Fischer, David F.; Berkers, Celia; Ovaa, Huib; Quinlan, Roy A.; Hol, Elly M.

    2009-01-01

    Increased expression of the astrocytic intermediate filament protein glial fibrillary acidic protein (GFAP) is a characteristic of astrogliosis. This process occurs in the brain during aging and neurodegeneration and coincides with impairment of the ubiquitin proteasome system. Inhibition of the proteasome impairs protein degradation; therefore, we hypothesized that the increase in GFAP may be the result of impaired proteasomal activity in astrocytes. We investigated the effect of proteasome inhibitors on GFAP expression and other intermediate filament proteins in human astrocytoma cells and in a rat brain model for astrogliosis. Extensive quantitative RT-PCR, immunocytochemistry, and Western blot analysis resulted unexpectedly in a strong decrease of GFAP mRNA to Hol, E. M. Intermediate filament transcription in astrocytes is repressed by proteasome inhibition. PMID:19332645

  13. Science-based bioprocess design for filamentous fungi.

    Science.gov (United States)

    Posch, Andreas E; Herwig, Christoph; Spadiut, Oliver

    2013-01-01

    Industrial bioprocesses are commonly based on empiricism rather than scientific process understanding. In this review, we summarize current strategies for science-based bioprocess design and control for filamentous fungi aiming at reducing development times and increasing process economics. We discuss recent developments and trends regarding three crucial aspects throughout the bioprocess life cycle of filamentous fungi, namely (i) strain and inoculum characterization, (ii) morphology, and (iii) rheology, as well as their effects on process performance. Complex interconnections between strain, inoculum, morphology, rheology, and process design are outlined and discussed. Only combining different hard type sensors with soft sensor technology and the development of simplified mechanistic models can enable science-based bioprocess design for filamentous fungi. Copyright © 2012 Elsevier Ltd. All rights reserved.

  14. Current state of genome-scale modeling in filamentous fungi

    DEFF Research Database (Denmark)

    Brandl, Julian; Andersen, Mikael Rørdam

    2015-01-01

    The group of filamentous fungi contains important species used in industrial biotechnology for acid, antibiotics and enzyme production. Their unique lifestyle turns these organisms into a valuable genetic reservoir of new natural products and biomass degrading enzymes that has not been used to full...... testing them in vivo. The increasing availability of high quality models and molecular biological tools for manipulating filamentous fungi renders the model-guided engineering of these fungal factories possible with comprehensive metabolic networks. A typical fungal model contains on average 1138 unique...... metabolic reactions and 1050 ORFs, making them a vast knowledge-base of fungal metabolism. In the present review we focus on the current state as well as potential future applications of genome-scale models in filamentous fungi....

  15. Persistence of activity in noisy motor-filament assemblies

    CERN Document Server

    Chelakkot, Raghunath; Mahadevan, L

    2015-01-01

    Long, elastic filaments cross-linked and deformed by active molecular motors occur in various natural settings. The overall macroscopic mechanical response of such a composite network depends on the coupling between the active and the passive properties of the underlying constituents and nonlocal interactions between different parts of the composite. In a simple one dimensional system, using a mean field model, it has been shown that the combination of motor activity and finite filament extensibility yields a persistence length scale over which strain decays. Here we study a similar system, in the complementary limit of strong noise and moderate extensibility, using Brownian multi-particle collision dynamics-based numerical simulations that includes the coupling between motor kinetics and local filament extensibility. While the numerical model shows deviations from the mean field predictions due to the presence of strong active noise caused by the variations in individual motor activity, several qualitative f...

  16. Modeling the Galactic Center Nonthermal Filaments as Magnetized Wake

    CERN Document Server

    Dahlburg, R B; La Rosa, T N; Shore, S N; Dahlburg, Russell B.; Einaudi, Giorgio; Shore, Steven N.

    2001-01-01

    We simulate the Galactic Center nonthermal filaments as magnetized wakes formed dynamically from amplification of a weak (tens of $\\mu$G) global magnetic field through the interaction of molecular clouds with a Galactic Center wind. One of the key issues in this cometary model is the stability of the filament against dynamical disruption. Here we show 2-dimensional MHD simulations for interstellar conditions that are appropriate for the Galactic Center. The structures eventually disrupt through a shear driven nonlinear instability but maintain coherence for lengths up to 100 times their width as observed. The final instability, which destroys the filament through shredding and plasmoid formation, grows quickly in space (and time) and leads to an abrupt end to the structure, in accord with observations. As a by-product, the simulation shows that emission should peak well downstream from the cloud-wind interaction site.

  17. Supergranular-scale magnetic flux emergence beneath an unstable filament

    CERN Document Server

    Palacios, J; Guerrero, A; Saiz, E; Cerrato, Y

    2015-01-01

    Here we report evidence of a large solar filament eruption on 2013, September 29. This smooth eruption, which passed without any previous flare, formed after a two-ribbon flare and a coronal mass ejection towards Earth. The coronal mass ejection generated a moderate geomagnetic storm on 2013, October 2 with very serious localized effects. The whole event passed unnoticed to flare-warning systems. We have conducted multi-wavelength analyses of the Solar Dynamics Observatory through Atmospheric Imaging Assembly (AIA) and Helioseismic and Magnetic Imager (HMI) data. The AIA data on 304, 193, 211, and 94 \\AA sample the transition region and the corona, respectively, while HMI provides photospheric magnetograms, continuum, and linear polarization data, in addition to the fully inverted data provided by HMI. [...] We have observed a supergranular-sized emergence close to a large filament in the boundary of the active region NOAA11850. Filament dynamics and magnetogram results suggest that the magnetic flux emergenc...

  18. High-resolution spectroscopy of a giant solar filament

    CERN Document Server

    Kuckein, C; Verma, M

    2013-01-01

    High-resolution spectra of a giant solar quiescent filament were taken with the Echelle spectrograph at the Vacuum Tower Telescope (VTT; Tenerife, Spain). A mosaic of various spectroheliograms (H\\alpha, H\\alpha\\ +/- 0.5\\AA\\ and Na D2) were chosen to examine the filament at different heights in the solar atmosphere. In addition, full-disk images (He I 10830\\AA\\ and Ca II K) of the Chromspheric Telescope and full-disk magnetograms of the Helioseismic and Magnetic Imager were used to complement the spectra. Preliminary results are shown of this filament, which had extremely large linear dimensions (~ 740'') and was observed in November 2011 while it traversed the northern solar hemisphere.

  19. Quantification of Processing Effects on Filament Wound Pressure Vessels

    Science.gov (United States)

    Aiello, Robert A.; Chamis, Christos C.

    1999-01-01

    A computational simulation procedure is described which is designed specifically for the modeling and analysis of filament wound pressure vessels. Cylindrical vessels with spherical or elliptical end caps can be generated automatically. End caps other than spherical or elliptical may be modeled by varying circular sections along the x-axis according to the C C! end cap shape. The finite element model generated is composed of plate type quadrilateral shell elements on the entire vessel surface. This computational procedure can also be sued to generate grid, connectivity and material cards (bulk data) for component parts of a larger model. These bulk data are assigned to a user designated file for finite element structural/stress analysis of composite pressure vessels. The procedure accommodates filament would pressure vessels of all types of shells-of-revolution. It has provisions to readily evaluate initial stresses due to pretension in the winding filaments and residual stresses due to cure temperature.

  20. Quantification of Processing Effects on Filament Wound Pressure Vessels. Revision

    Science.gov (United States)

    Aiello, Robert A.; Chamis, Christos C.

    2002-01-01

    A computational simulation procedure is described which is designed specifically for the modeling and analysis of filament wound pressure vessels. Cylindrical vessels with spherical or elliptical end caps can be generated automatically. End caps other than spherical or elliptical may be modeled by varying circular sections along the x-axis according to the end cap shape. The finite element model generated is composed of plate type quadrilateral shell elements on the entire vessel surface. This computational procedure can also be used to generate grid, connectivity and material cards (bulk data) for component parts of a larger model. These bulk data are assigned to a user designated file for finite element structural/stress analysis of composite pressure vessels. The procedure accommodates filament wound pressure vessels of all types of shells-of -revolution. It has provisions to readily evaluate initial stresses due to pretension in the winding filaments and residual stresses due to cure temperature.