Morfologia e crescimento do músculo estriado esquelético no pirarucu Arapaima gigas Cuvier, 1817 (Teleostei, Arapaimidae = Morphology and skeletal muscle growth in pirarucu Arapaima gigas Cuvier, 1817 (Teleostei, Arapaimidae

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Fernanda Regina Carani

2008-04-01

Full Text Available O objetivo deste trabalho foi avaliar as características morfológicas e de crescimento do músculo estriado esquelético no pirarucu (Arapaima gigas. Foram utilizados animais em duas fases de crescimento: alevinos, com 50 dias de idade, e juvenis, com umano de idade. Após eutanásia dos animais, fragmentos musculares das regiões dorsal, lateral cranial e lateral caudal foram coletados e congelados em nitrogênio líquido. Cortes histológicos (10 mm foram submetidos às colorações HE e Tricrômico de Gomori, para a análise morfológica, e NADH-TR, para a análise do metabolismo oxidativo das fibras musculares. Foi calculado o menor diâmetro das fibras musculares brancas nas regiões dorsal e lateral cranial. A musculatura dorsal branca mostrou-se mais desenvolvida e, namusculatura lateral, observaram-se compartimentos distintos: superficial vermelho e profundo branco. Nos alevinos, o crescimento muscular ocorreu predominantemente por hiperplasia das fibras e, nos juvenis, predominou o crescimento muscular por hipertrofia.The aim of this work was to evaluate the morphological and growth characteristics of skeletal muscle tissue in pirarucu (Arapaimagigas using alevins (50 days old and juveniles (1 year old. Muscle samples were collected from dorsal, lateral cranial and lateral caudal regions, and then frozen in liquid nitrogen. Histological frozen sections (10μm were stained with HE and Gomori Trichrome formorphological analysis, and NADH-TR to evaluate muscle fiber oxidative metabolism. Morphometric analysis samples were obtained from dorsal and lateral cranial regions, and the smallest-diameter white fibers were measured. White dorsal muscle was thicker, andtwo muscle fiber compartments were identified in the lateral cranial region: red (superficial and white (deep muscle. Hyperplasia muscle growth predominated in alevins and hypertrophy in juveniles.

Population Dynamics Modeling of Arapaima gigas Modelagem da dinâmica populacional de Arapaima gigas

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Eliane dos Santos de Souza Coutinho

2010-01-01

Full Text Available Pirarucu (Arapaima gigas has been of the most important natural fishing resources of the Amazon region. Due to its economic importance, and the necessity to preserve the species hand, field research concerning the habits and behavior of the pirarucu has been increasing for the last 20 years. The aim of this paper is to present a mathematical model for the pirarucu population dynamics considering the species peculiarities, particularly the male parental care over the offspring. The solution of the dynamical systems indicates three possible equilibrium points for the population. The first corresponds to extinction; the third corresponds to a stable population close to the environmental carrying capacity. The second corresponds to an unstable equilibrium located between extinction and full use of the carrying capacity. It is shown that lack of males’ parental care closes the gap between the point corresponding to the unstable equilibrium and the point of stable non-trivial equilibrium. If guarding failure reaches a critical point the two points coincide and the population tends irreversibly to extinction. If some event tends to destabilize the population equilibrium, as for instance inadequate parental care, the model responds in such a way as to restore the trajectory towards the stable equilibrium point avoiding the route to extinction. The parameters introduced to solve the system of equations are partially derived from limited but reliable field data collected at the Mamirauá Sustainable Development Reserve (MSDR in the Brazilian Amazonian Region.Pirarucu (Arapaima gigas tem sido um dos mais importantes recursos pesqueiros naturais da Amazônia. Devido à sua importância econômica, por um lado, e a necessidade de preservar a espécie, por outro lado, o domínio da investigação relativa a hábitos e comportamento do pirarucu tem sido crescente nos últimos 20 anos. O objetivo deste trabalho é apresentar um modelo matemático para a din

First record of Trichodina heterodentata (Ciliophora: Trichodinidae) from Arapaima gigas cultivated in Peru Primeiro registro de Trichodina heterodentata (Ciliophora: Trichodinidae) em Arapaima gigas cultivados no Peru

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Luis Henostroza Miranda; Natalia Marchiori; Carmela Rebaza Alfaro; Maurício Laterça Martins

2012-01-01

This study characterized morphologically Trichodina heterodentata Duncan, 1977 from cultivated fingerlings of "pirarucu" Arapaima gigas in Peru. Body and gill smears were air-dried at room temperature, impregnated with silver nitrate and/or stained with gomori trichromic. Prevalence was 100%. Trichodina heterodentata was considered a medium-sized trichodinid with mean body diameter of 56.0+ 5.25 (47.3-76.0) μm, denticulate ring 28.21± 2.71 (20-34.7) μm, adhesive disc 45.7±3.8 (37.1-...

Cultivo do Pirarucu (Arapaima gigas em viveiro escavado Pirarucu (Arapaima gigas husbandry in ponds

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Manoel Pereira-Filho

2003-12-01

Full Text Available Foi avaliado o desempenho de juvenis de pirarucu em criação intensiva em viveiros escavados. Oitenta e cinco peixes com peso médio inicial de 133,3 ± 1,3g foram estocados em dois viveiros de 120m² cada (densidade de 1 peixe/3m², com profundidade média de 1m e alimentados duas vezes ao dia (9:00 e 14:00h com ração extrusada para peixes carnívoros contendo 40% de proteína bruta. Foi verificado diariamente o consumo de ração, enquanto mensalmente os peixes foram amostrados para a realização de biometrias com a finalidade de verificar seu desempenho em peso e comprimento. Após 12 meses de cultivo os peixes atingiram peso médio de 7,0 ± 1,1kg, comprimento total de 88,2 ±6,4cm, com conversão alimentar de 1,5 e produtividade de 2,5kg/m². Estes resultados mostram o grande potencial do pirarucu para a piscicultura intensiva na Amazônia.Growth performance of pirarucu cultivated under intensive production system in excavated ponds was evaluated. Eighty five fishes with an initial mean weight of 133.3 ± 1.3 g were stocked into two 120m² ponds and were fed extruded diets with 40% crude protein twice a day (0900 and 1400 h. Feed consumption was recorded daily, while fish were sampled every month to check for body weight gain and growth performance. After 12 months mean weight was around 7.0 ± 1.1kg, total length was 88.2 ± 6.4 cm, feed conversion ratio were 1.5 and productivity 2.5kg/m². These results have shown that pirarucu presents a great potential when raised under intensive aquaculture systems.

Sex determination in the Giant fish of Amazon Basin, Arapaima gigas (Osteoglossiformes, Arapaimatidae, using laparoscopy Determinação do sexo no peixe gigante da Bacia Amazônica, Arapaima gigas (Osteoglossiformes, Arapaimatidae, usando laparoscopia

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Carlos Riedel Porto Carreiro

2011-01-01

Full Text Available The Giant of Amazon basin, pirarucu, Arapaima gigas, is the largest scaled freshwater fish in the world. pirarucu cultivation has recently started, driven by the decline in natural populations and high market value. Currently, there are no reliable methods for sexual differentiation in this species other than direct examination of gonads, which requires dissection of specimens. A non-lethal and less invasive method for sexual identification is highly desirable in order to properly group broodstock for mating and offspring production. We utilized laparoscopic examination in anesthetized pirarucu to differentiate between male and female individuals. This method allowed for the observation and differentiation of the reproductive organs within an individual. Our results suggest that laparoscopy is an efficient method for sex differentiation in pirarucu causing minimal stress to the fish.O gigante da bacia amazônica, pirarucu, Arapaima gigas, é o maior peixe de escamas de água doce do mundo. O seu cultivo teve início recentemente motivado pelo declínio de suas populações naturais em virtude do alto valor de sua carne no mercado. Não existem métodos para a diferenciação sexual nesta espécie, o único método é o exame direto das gônadas, o qual requer a dissecação do espécime. Um método para a identifica��ão sexual é altamente desejável, a fim de selecionar grupos de reprodutores para o acasalamento e, portanto, a produção de progênie. A fim de diferenciar reprodutores machos de fêmeas, foi utilizado o exame laparoscópico em animais previamente anestesiados. Este método permitiu a observação dos órgãos abdominais, incluindo gônadas, com grande precisão. Os resultados mostram que a laparoscopia é um método eficiente para a diferenciação do sexo em pirarucu e causam o mínimo de stress para os animais.

Chromosomal characterization of the bonytongue Arapaima gigas (Osteoglossiformes: Arapaimidae

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Debora Karla Marques

Full Text Available The mitotic chromosomes of the pirarucu Arapaima gigas inhabiting the middle Araguaia River and collected in the municipality of Araguaiana (MT, Brazil were studied. The chromosomes were analyzed through Giemsa staining, C-banding, Ag-NOR staining and in situ hybridization using an 18S rRNA gene probe. The karyotype had 2n=56 comprising 14 biarmed and 14 uniarmed chromosome pairs in both sexes. No cytologically distinguishable sex chromosome was identified. A single NOR-bearing chromosome pair was detected by Ag-NOR staining and confirmed by 18S rDNA- FISH. Faint constitutive heterochromatin was C-banded in the centromeric region of some chromosomes.

First record of Trichodina heterodentata (Ciliophora: Trichodinidae from Arapaima gigas cultivated in Peru Primeiro registro de Trichodina heterodentata (Ciliophora: Trichodinidae em Arapaima gigas cultivados no Peru

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Luis Henostroza Miranda

2012-09-01

Full Text Available This study characterized morphologically Trichodina heterodentata Duncan, 1977 from cultivated fingerlings of "pirarucu" Arapaima gigas in Peru. Body and gill smears were air-dried at room temperature, impregnated with silver nitrate and/or stained with gomori trichromic. Prevalence was 100%. Trichodina heterodentata was considered a medium-sized trichodinid with mean body diameter of 56.0+ 5.25 (47.3-76.0 μm, denticulate ring 28.21± 2.71 (20-34.7 μm, adhesive disc 45.7±3.8 (37.1-57.3 μm diameter and number of denticles of 20.7± 2.6 (12-24. The present study reports not only the first occurrence of T. heterodentata in Peru but also the first record of this trichodinid infesting A. gigas. Camparative tables of all reports of T. heterodentata are also presented.Este estudo caracterizou morfologicamente Trichodina heterodentata Duncan, 1977 de alevinos de "pirarucu" Arapaima gigas cultivados no Peru. Esfregaços do corpo e brânquias foram secos à temperatura ambiente, impregnados com nitrato de prata e/ou corados com tricrômico de gômori. A prevalência foi de 100%. Trichodina heterodentata foi considerada um tricodinídeo de tamanho médio com diâmetro médio do corpo de 56,0+ 5,25 (47,3-76,0 μm, anel denticulado 28,21± 2,71 (20,0-34,7 μm, disco adesivo 45,7±3,8 (37,1-57,3 μm de diâmetro e número de dentículos de 20,7± 2,6 (12-24. O presente estudo registra não somente a primeira ocorrência de T. heterodentata no Peru mas também o primeiro registro do tricodinídeo parasitando A. gigas. Tabelas comparativas biométricas de todos os registros de T. heterodentata também são apresentados.

Tissue alterations in the pirarucu, Arapaima gigas, infected by Goezia spinulosa (Nematoda).

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Menezes, Rodrigo Caldas; Dos Santos, Sonia Maria Cursino; Ceccarelli, Paulo Sérgio; Tavares, Luiz Eduardo Roland; Tortelly, Rogério; Luque, José Luis

2011-01-01

Five specimens of Arapaima gigas caught in the Araguaia River (State of Mato Grosso, Brazil) were investigated for helminths in 2004. Numerous adult specimens of the rhapidascarid nematode Goezia spinulosa were found in stomach ulcers in all the specimens of A. gigas and were surrounded by thickening of the mucosa. The gastric glands of all the fish were necrotic and there was a severe and diffuse inflammatory reaction composed of eosinophils (which were predominant), lymphocytes and rare macrophages in the mucosa, submucosa and muscle layer. This is the first report of tissue lesion occurrences in this host, in the presence of G. spinulosa, and it confirms the high pathogenicity of this parasite species.

Alterações teciduais em pirarucu, Arapaima gigas, infectado por Goezia spinulosa (Nematoda)

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Menezes, Rodrigo Caldas; Santos, Sonia Maria Cursino dos; Ceccarelli, Paulo Sérgio; Tavares, Luiz Eduardo Roland; Tortelly, Rogério; Luque, José Luis

2011-01-01

Cinco espécimens de Arapaima gigas capturados no Rio Araguaia (Estado do Mato Grosso, Brasil) foram investigados para diagnóstico de infecção por helmintos em 2004. Numerosos espécimes adultos do nematóide rafidascarídeo Goezia spinulosa foram encontrados em úlceras do estômago circundadas por um espessamento da mucosa em todos os exemplares de A. gigas. As glândulas gástricas de todos encontravam-se necróticas e havia um acentuado e difuso infiltrado inflamatório composto por eosinófilos, qu...

LENGTH-WEIGHT RELATIONSHIP AND RELATIVE CONDITION FACTOR OF Arapaima gigas SCHINZ, 1822 FROM EXTRACTIVE RESERVE OF JURUÁ RIVER, AMAZONAS, BRAZIL

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Gilson Silva da Cunha

2014-12-01

Full Text Available Arapaima gigas (pirarucu is a large fish greatly appreciated in Amazon region. The present work determined the weight-length relationship and the relative condition factor (Kn of eviscerated pirarucu specimens from the extractive reserve (RESEX of Juruá river, Amazonas, Brazil. The relative frequency distributions by weight class indicated amplitude between 20,000 and 115,000g and the classes of greatest frequency were between 30,000 and 80,000g. The equation that describes 3.0157 this relationship is W = 0.0092L3.0157, showing an isometric growth. Kn presented values of 0.98 ± 0.01, ranging between 0.94-1.01. The results indicate that fish stock of A. gigas in the RESEX of Juruá river presents good management conditions since most of the fish caught presented commercial weight and high utilization of meat, and also the equations of weight-length relationship and Kn values can be considered as reference for A. gigas eviscerated of the studied region. Palavras-chave: pirarucu, biometric, homeostasis, management. DOI: http://dx.doi.org/10.18561/2179-5746/biotaamazonia.v4n4p124-126

Feeding of juvenile pirarucu (Arapaima gigas, Arapaimidae in their natural environment, lago Quatro Bocas, Araguaiana-MT, Brazil

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Valdézio de Oliveira

Full Text Available The stomach content of samples of juvenile Arapaima gigas was analized to obtain information about feeding in natural environments. This species occurs in the Amazonian basin, predominantly in floodplain environment. This is the case of the valley of the middle rio Araguaia, where the lago Quatro Bocas is situated. Juveniles A. gigas prefered insects, microcrustaceans and gastropods, most of autochthonous origin. All the stomachs examined contained at least one food item.

Light and scanning electron microscopy of Henneguya arapaima n. sp. (Myxozoa: Myxobolidae) and histology of infected sites in pirarucu (Arapaima gigas: Pisces: Arapaimidae) from the Araguaia River, Brazil.

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Feijó, M M; Arana, S; Ceccarelli, P S; Adriano, E A

2008-10-20

In this report, we describe Henneguya arapaima n. sp., a parasite of the gill arch and gall bladder of Arapaima gigas (pirarucu) collected in the Araguaia River, in the municipality of Nova Crixás, Goiás State, central Brazil. The plasmodia were white, round or ellipsoidal and measured 200-600 microm. Parasite development was asynchronous and the mature spores were fusiform and had smooth wall. The spores measurements were (range, with means+/-S.D. in parentheses): total length-48.4-53.1 microm (51.6+/-3.4 microm), body length-13.5-15.2 microm (14.2+/-0.8 microm), body width-5.1-6.1 microm (5.7+/-0.5 microm), body thickness-4.7-5.3 microm (4.9+/-0.2 microm) and caudal process length-38.0-41.2 microm (38.3+/-2.9 microm). The polar capsules were elongated and of unequal size, with lengths of 6.3-6.8 microm (6.5+/-0.2) and 6.2-6.6 microm (6.3+/-0.1) for the longest and shortest axes, respectively. Capsule width was 1.4-1.6 microm (1.5+/-0.1). Histological analysis showed that the plasmodia occurred in the tunica adventitia of the gall bladder and were delimited by a thin capsule of connective tissue. In the gill arch, the plasmodia were also surrounded by connective tissue similar to the endomesium of striated skeletal muscle cells. Sixty-five juvenile specimens of A. gigas weighing 1.0-25.0 kg were examined, 17 (26.1%) of which were infected. Of these, 14 (82.3%) had cysts in the gall bladder, two (11.7%) had cysts in the gill arch and only one (5.9%) had cysts in both organs. When the fish were grouped by weight, the prevalence of infection in fish weighing up to 10.0 kg (20.7%) was significantly lower than in fish weighing 10.1-25.0 kg (50%) (G=3.93; d.f.=1; p<0.05).

Dawestrema cycloancistrium (Monogenea) from the head pores of arapaimas

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Santos, C. P.; Da Silva, M.T.; Moravec, František

2017-01-01

Roč. 125, č. 2 (2017), s. 93-100 ISSN 0177-5103 Institutional support: RVO:60077344 Keywords : Amazonia * Arapaima gigas * Brazil * Freshwater fish * Monogenea * Parasite * Peru * Pirarucu Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine OBOR OECD: Veterinary science Impact factor: 1.549, year: 2016

Aspectos reprodutivos e perfil hormonal dos esteróides sexuais do pirarucu, Arapaima gigas (SCHINZ,1822, em condições de cativeiro Reproductive aspects and sexual steroids hormonal profiles of pirarucu, Arapaima gigas (SCHINZ,1822, in captivity conditions

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Leonardo Bruno Barbosa Monteiro

2010-09-01

Full Text Available Esta pesquisa teve como objetivo caracterizar a reprodução e o perfil hormonal dos esteróides sexuais do pirarucu, Arapaima gigas, além de validar um aspecto do dimorfismo sexual secundário. O experimento foi realizado na Fazenda Santo Antônio II, em Presidente Figueredo-AM, no período de fevereiro de 2004 a fevereiro de 2005. Foram selecionados 24 exemplares e divididos em três grupos de oito peixes (grupo "A", "B" e "C" com pirarucus de mais de quatro anos de idade, com três anos e dois anos, respectivamente. Os pirarucus foram estocados em três tanques de 400m², um para cada grupo. Aspectos comportamentais, como o interesse por alimento, brigas, formação de casais e presença de ninhos, foram observados ao longo de todo o experimento. Amostras de sangue foram coletadas mensalmente, de todos os peixes, observou-se a presença de uma mancha alaranjada no macho como uma característica sexual secundária. Foram mensurados os níveis de testosterona (T, 17beta-estradiol (E2 e 17alfa-hidroxi-progesterona (17aOHP através de radioimunoensaio (RIA de fase sólida. Todos os machos dos grupos "A" e "B" puderam ser identificados pela mancha alaranjada na região inferior da cabeça, corroborada pela concentração de testosterona, comprovando o conhecimento empírico dos ribeirinhos. Os níveis de T e E2 nos peixes do grupo "A" e "B" tiveram maiores picos no início do período de chuva, enquanto que o 17aOHP teve oscilações constantes e pequenos picos no final do período chuvoso, os peixes do grupo "C" acompanharam essa tendência em concentrações menores.The purpose of this study was to characterize the growth, reproduction and hormonal profile of pirarucu, Arapaima gigas, and validate one sexual dimorphism characteristic. The experiment was carried in the fish farm Santo Antonio II, Presidente Figueredo city in the state of Amazonas Brazil, from February 2004 to February 2005. In the experiment, 24 fishes were selected and divided

Goezia spinulosa (Nematoda: Raphidascarididae), a pathogenic parasite of the arapaima Arapaima gigas (Osteichthyes).

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Santos, Cláudia Portes; Moravec, Frantisek

2009-03-01

The nematode Goezia spinulosa (Diesing, 1839) (Raphidascarididae) is redescribed based on specimens found in the stomach and intestine of the naturally infected arapaima Arapaima gigas (Schinz) from the Mexiana Island, Amazon River Delta, Brazil. Light and electron microscopy examinations revealed some previously unreported or inaccurately described morphological features in the species, such as the position of the excretory pore, phasmids in the male or the number (4) of postanal papillae. The morphology of G. spinulosa is compared with that of other four congeneric species parasitizing freshwater fishes in South America. This nematode seems to be one of the most pathogenic parasites of A. gigas in the Mexiana Island, which are responsible for a high mortality of cultured arapaima fingerlings. Apparently, the source of G. spinulosa infection for arapaima fingerlings cultured in tanks was the infected plankton collected in the localities inhabited by wild arapaimas. Therefore, control measures should include the sterilisation of the plankton before its use as food for fish. A rare infection of Eustrongylides sp. larvae (Dioctophymatidae) in arapaima fingerlings was also found (new host record); the larvae were inside swellings on the body surface.

UVA/UVB-induced genotoxicity and lesion repair in Colossoma macropomum and Arapaima gigas Amazonian fish.

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Groff, Aline Aparecida; da Silva, Juliana; Nunes, Emilene A; Ianistcki, Martus; Guecheva, Temenouga N; de Oliveira, Alzira Miranda; de Oliveira, Christiane Patrícia Feitosa; Val, Adalberto Luis; Henriques, João A P

2010-05-03

Ultraviolet radiation is known to cause adverse effects to aquatic species and aquatic environments. The fish Colossoma macropomum (tambaqui) and Arapaima gigas (pirarucu) live in the Amazon basin, near the Equator, and thus receive high intensity of ultraviolet radiation. Deforestation further aggravates the situation by reducing shade at ground level. The aim of this study was to evaluate the genotoxic effects of UVA and UVB radiation on erythrocytes of tambaqui and pirarucu fish using Micronuclei test and Comet assay. Our study showed that UV radiation caused DNA damage in both species as detected by Comet assay. In addition, there were differences in response to genotoxicity between both species, which are possibly related to their evolutionary history. Tambaqui fish exposed to ultraviolet radiation for different periods presented clear dose-response in DNA damage profile. Significant damage repair was observed 24h after cessation of ultraviolet radiation exposure. At the test conditions used, no significant increase in micronucleated cells was observed in tambaqui and pirarucu fish. Tambaqui proved to be more sensitive to ultraviolet radiation than Pirarucu, as detected by Comet assay, showing statistically higher baseline DNA damage. The present results demonstrated that alkaline Comet assay was very sensitive for detecting the UV-induced genotoxicity during the short exposure period in our study. In addition, the present study also suggests that tambaqui and pirarucu fish are useful sentinel organisms, as their UV sensitivity allows them to be effective monitors of biological hazards in the Amazon region. Copyright 2010 Elsevier B.V. All rights reserved.

The monotony of transferrin and esterase electrophoretic patterns in pirarucu, Arapaima gigas (Schinz, 1822) from Santa Cruz Lake, Tefé River, Amazonas, Brazil.

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Teixeira, A S

2008-05-07

Starch gel electrophoresis was used for examining the transferrin gene locus (Tf) and two esterase gene loci (Est-1 and Est-D1) of a pirarucu (Arapaima gigas) population sample collected from Santa Cruz Lake, Tefé River, Amazonas, Brazil. The Tf locus was tentatively classified as being polymorphic, showing two double-banded patterns (Tf(12) and Tf(22)) of the three theoretically expected ones (Tf(11), Tf(12) and Tf(22)), presumably controlled by two co-dominant alleles, Tf(1) and Tf(2). The monotony detected in pirarucu Tf locus genotypes showing a very high proportion of the double-banded heterozygote pattern Tf(12) (95% of the sampled individuals) may indicate the possibility of their having come from representatives of the same brood begotten by a pair of fish, where a single-banded Tf(11) homozygote pattern male would have crossed with a single-banded Tf(22) homozygote pattern female, or vice versa. One zone of electrophoretic activity was detected in esterase, presumably controlled by a monomorphic Est-1 locus with the fixed allele Est-1(1) where all individuals showed the single-banded Est-1(11) homozygote pattern. Esterase-D also displayed one zone of electrophoretic activity, presumably controlled by a monomorphic Est-D1 locus with a fixed allele Est-D1(1) where all individuals revealed the single-banded Est-D1(11) genotype pattern. The monotony comprised by single-banded genotype patterns in both esterase systems tested may also indicate the possibility of the individuals from the sample examined having come from representatives of the same brood begotten by a pair of fish with both the male and female having the same genotypes.

Uso de alimento vivo como dieta inicial no treinamento alimentar de juvenis de pirarucu.

OpenAIRE

CAVERO, B.A.S.; ITUASSÚ, D.R.; PEREIRA-FILHO, M.; ROUBACH, R.; BORDINHON, A.M.; FONSECA, F.A.L. da; ONO, E.A.

2003-01-01

O objetivo deste trabalho foi testar a eficiência do alimento vivo como dieta inicial no treinamento alimentar de juvenis de pirarucu, Arapaima gigas. Foram usados dois tratamentos, Artemia sp. e mistura de zooplâncton nativo. O ganho de peso, a porcentagem de comedores e a sobrevivência não apresentaram diferença estatística significativa entre os tratamentos (p>0,05). A dieta inicial, à base de alimento vivo, é eficiente no treinamento alimentar de juvenis de pirarucu.

Uso de alimento vivo como dieta inicial no treinamento alimentar de juvenis de pirarucu

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Cavero Bruno Adan Sagratzki

2003-01-01

Full Text Available O objetivo deste trabalho foi testar a eficiência do alimento vivo como dieta inicial no treinamento alimentar de juvenis de pirarucu, Arapaima gigas. Foram usados dois tratamentos, Artemia sp. e mistura de zooplâncton nativo. O ganho de peso, a porcentagem de comedores e a sobrevivência não apresentaram diferença estatística significativa entre os tratamentos (p>0,05. A dieta inicial, à base de alimento vivo, é eficiente no treinamento alimentar de juvenis de pirarucu.

Características bioquímicas e hematológicas do pirarucu Arapaima gigas Schinz, 1822 (Arapaimidae de cultivo semi-intensivo na Amazônia Biochemical and hematological characteristics of the pirarucu Arapaima gigas Schinz, 1822 (Arapaimidae from semi-intensive culture in the Amazon

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Gustavo Valadares Fonseca Drumond

2010-09-01

Full Text Available O presente estudo comparou os níveis plasmáticos de glicose, proteínas totais, uréia, triglicerídeos e colesterol, a contagem de eritrócitos, leucócitos e trombócitos entre alevinos e juvenis de Arapaima gigas (Osteoglociformes, Arapaimidae de uma piscicultura semi-intensiva de Manaus, estado do Amazonas, Brasil. Os alevinos de A. gigas apresentaram níveis significativamente (p0,05 no número de trombócitos e leucócitos totais entre alevinos e juvenis. Os juvenis de A. gigas apresentaram menor quantidade de linfócitos e maior quantidade de monócitos, neutrófilos e eosinófilos, quando comparados aos alevinos. Em estudos futuros, espécimes de A. gigas com outras idades também deverão ser comparados para melhor entendimento dos efeitos da idade neste peixe amazônico, pois estas informações, além de possibilitarem uma melhor compreensão da fisiologia desta espécie, poderão auxiliar no estabelecimento de estratégias para seu manejo.The present study compared the biochemical and hematological parameters of fingerlings and juveniles Arapaima gigas (Osteoglociformes, Arapaimidae from a semi-intensive fish farming in Manaus, Amazon State, Brazil. Fingerlings A. gigas had lower levels of total protein, triglycerides, urea and mean cell volume (MCV, but higher (p0.05 in the total thrombocytes and total white blood cell counts between fingerlings and juveniles. Juveniles A. gigas presented lower lymphocytes number and higher monocytes, neutrophils and eosinophils number when compared to the fingerlings. In further studies, A. gigas specimens with other ages should also be compared for a better understanding of the ontogenic development in this Amazon fish, because this information besides increase the knowledge of the physiology of this species, can aid in the establishment of strategies for its adequate handling.

Respostas de estresse em pirarucu (Arapaima gigas durante práticas de rotina em piscicultura Stress responses of pirarucu (Arapaima gigas during routine aquaculture practices

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Franmir Rodrigues Brandão

2006-01-01

Full Text Available O pirarucu é um peixe nativo da bacia Amazônica com respiração aérea obrigatória. Em condições de criação, atinge até 10 kg em um ano, sendo um dos peixes com maior potencial para criação na Amazônia. O objetivo deste estudo foi avaliar as respostas de estresse em pirarucu quando submetido a práticas comuns em sistema de criação. Para isso, foram realizados três diferentes experimentos: 1 transporte; 2 adensamento; e 3 exposição à amônia. Foram analisados parâmetros do metabolismo energético (glicose e lactato, hormonal (cortisol, e de hematologia (hematócrito. Em todos os protocolos testados foram observadas alterações nos parâmetros fisiológicos do pirarucu. As respostas de estresse durante o transporte foram similares às do adensamento, porém, a magnitude das repostas ao adensamento foi maior. A exposição à amônia não causou alteração imediata nos parâmetros fisiológicos, havendo latência nas respostas de estresse. Com os resultados obtidos, pode-se concluir que as alterações nos parâmetros metabólicos ocorrem no momento de maior intensidade de manejo, e provavelmente podem ser reduzidas com adoção de boas práticas na criação.Pirarucu is an obligatory air breathing fish native to the Amazon basin. In rearing conditions it reaches up to 10 kg in one year, being one of the fish with the greatest potential for farming in the Amazon. The aim of this study was to verify stress responses in pirarucu during routine aquaculture practices. Three experiments were carried out: 1 transport; 2 crowding; and 3 exposure to ammonia. Parameters of the energy metabolism (glucose and lactate, hormonal (cortisol, and hematological (hematocrit were analyzed. All experiments caused alterations in the physiological parameters of pirarucu. The stress responses during transport are similar to crowding. However, the magnitude of the responses to crowding was higher. Ammonia exposure does not cause an immediate

Anestesia do pirarucu por aspersão direta nas brânquias do eugenol em solução aquosa Anesthesia in pirarucu by eugenol sprays in the gills

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Alexandre Honczaryk

2009-04-01

Full Text Available O pirarucu (Arapaima gigas é um peixe que vem ganhando importância cada vez maior na piscicultura comercial na Amazônia. No entanto, por ser um animal de grande porte, no campo, é comum o relato de acidentes envolvendo pancadas violentas em técnicos durante o manejo. Desse modo, é imperativa a anestesia desses animais. Todavia, para a espécie em discussão, a realização de banhos anestésicos, muitas vezes, não é possível devido ao tamanho do animal e ao risco de afogamento do peixe pulmonado. O presente trabalho avaliou de maneira prática a viabilidade do eugenol como anestésico para o pirarucu por aspersão direta nas brânquias. Para tanto, três animais jovens foram submetidos à aspersão de eugenol nas brânquias em concentração de 30mg L-1 e dois na concentração de 60mg L-1. O eugenol borrifado nas brânquias mostrou-se viável como anestésico para o pirarucu, não sendo observada a mortalidade de animais mesmo um mês após os testes.Pirarucu (Arapaima gigas is an important species to commercial fish farming in Amazon. It achieves more than 2m and 100kg. However, fish handling may be risky to workers. Anesthesia is necessary, but usual anesthetic baths are not feasible due to the size of fish and the pulmonary respiration of Pirarucu. This fish may die drowned in anesthetic baths. This research evaluated the alternative anesthetic eugenol to pirarucu by sprays in the gills. Solution in concentration of 30mg L-1 was sprinkled in the gills of three fish, and 60mg L-1 was sprinkled in the gills of two other fish. Eugenol sprays provided safe anesthesia for pirarucu. No mortality was observed even one month after the experiment.

Níveis de proteína bruta para juvenis de pirarucu Crude protein levels for juvenile pirarucu

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Daniel Rabello Ituassú

2005-03-01

Full Text Available O objetivo deste trabalho foi avaliar o efeito de quatro níveis de proteína sobre o crescimento de juvenis de pirarucu, Arapaima gigas. O experimento foi conduzido em delineamento inteiramente casualizado, com de quatro tratamentos (32,7%, 39,3%, 43,4% e 48,6% de proteína bruta, três repetições cada. Foram utilizados 120 peixes, com peso médio inicial de 120,6±3,5 g, distribuídos homogeneamente em 12 tanques-rede de 1 m³ cada, contendo dez peixes por tanque. Após 45 dias, os resultados indicaram que as dietas com 48,6% de proteína resultaram em melhor ganho de peso, crescimento específico e composição corporal diferenciada. A conversão alimentar e a eficiência da ração não produziram diferenças entre os tratamentos. O nível de proteína na ração que produz máximo crescimento é de 48,6%.The objective of this work was to verify the effect of four protein levels on pirarucu, Arapaima gigas, growth performance. One hundred and twenty pirarucu juveniles, with an average weight of 120.6±3.5 g, were stocked into 12 floating cages with 1 m³ (ten fish per cage, in a complete randomized design with four treatments (32.7%, 39.3%, 43.4% and 48.6% crude protein, in three replicates each. After 45 days, results showed that diet with highest protein level (48.6% produced a better weight gain, specific growth rate, and differentiated body composition. Feed conversion and protein efficiency ratios did not show any differences among treatments. The dietary protein level required to produce maximum growth is 48.6%.

Capillostrongyloides arapaimae sp. n. (Nematoda: Capillariidae), a new intestinal parasite of the arapaima Arapaima gigas from the Brazilian Amazon

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Santos, Cláudia Portes; Moravec, František; Venturieri, Rossana

2008-01-01

A new nematode species, Capillostrongyloides arapaimae sp. n., is described from the intestine and pyloric caeca of the arapaima, Arapaima gigas (Schinz), from the Mexiana Island, Amazon river delta, Brazil. It is characterized mainly by the length of the spicule (779-1,800 µm), the large size of the body (males and gravid females 9.39-21.25 and 13.54-27.70 mm long, respectively) and by the markedly broad caudal lateral lobes in the male. It is the third species of genus Capillostrongyloides ...

Capillostrongyloides arapaimae sp. n. (Nematoda: Capillariidae, a new intestinal parasite of the arapaima Arapaima gigas from the Brazilian Amazon

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Cláudia Portes Santos

2008-06-01

Full Text Available A new nematode species, Capillostrongyloides arapaimae sp. n., is described from the intestine and pyloric caeca of the arapaima, Arapaima gigas (Schinz, from the Mexiana Island, Amazon river delta, Brazil. It is characterized mainly by the length of the spicule (779-1,800 µm, the large size of the body (males and gravid females 9.39-21.25 and 13.54-27.70 mm long, respectively and by the markedly broad caudal lateral lobes in the male. It is the third species of genus Capillostrongyloides reported to parasitize Neotropical freshwater fishes.

Capillostrongyloides arapaimae sp. n. (Nematoda: Capillariidae), a new intestinal parasite of the arapaima Arapaima gigas from the Brazilian Amazon.

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Santos, Cláudia Portes; Moravec, Franti Ek; Venturieri, Rossana

2008-06-01

A new nematode species, Capillostrongyloides arapaimae sp. n., is described from the intestine and pyloric caeca of the arapaima, Arapaima gigas (Schinz), from the Mexiana Island, Amazon river delta, Brazil. It is characterized mainly by the length of the spicule (779-1,800 microm), the large size of the body (males and gravid females 9.39-21.25 and 13.54-27.70 mm long, respectively) and by the markedly broad caudal lateral lobes in the male. It is the third species of genus Capillostrongyloides reported to parasitize Neotropical freshwater fishes.

Caracterização genética do pirarucu Arapaima gigas (Cuvier) (Teleostei, Osteoglossidae) da bacia Tocantins-Araguaia, estado do Mato Grosso.

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Débora Karla Silvestre Marques

2003-01-01

Os Osteoglossiformes são representados na América do Sul pelos gêneros Arapaima e Osteoglossum, que ocorrem particularmente na região Amazônica, nas bacias Amazônica e Tocantins-Araguaia. Os estudos genéticos neste grupo são praticamente inexistentes, evidenciando a necessidade de informações para programas de conservação. A espécie Arapaima gigas da bacia hidrográfica Tocantins-Araguaia apresentou um 2n=56 cromossomos, com fórmula cariotípica 28M/SM+28ST/ A. A marcação por nitrato de p...

Net ion fluxes in the facultative air-breather Hoplosternum littorale (tamoata) and the obligate air-breather Arapaima gigas (pirarucu) exposed to different Amazonian waters.

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Baldisserotto, Bernardo; Copatti, Carlos E; Gomes, Levy C; Chagas, Edsandra C; Brinn, Richard P; Roubach, Rodrigo

2008-12-01

Fishes that live in the Amazon environment may be exposed to several kinds of water: black water (BW), acidic black water (pH 3.5) (ABW) and white water (WW), among others. The aim of the present study was to analyze net ion fluxes in the facultative air-breather Hoplosternum littorale (tamoata) and the obligate air-breather Arapaima gigas (pirarucu) exposed to different types of water. Fishes were acclimated in well water and later placed in individual chambers containing one type of water for ion flux measurements. After 4 h, the water in the chambers was replaced by a different type of water. The transfer of both species to ABW (independent of previous water exposure) increased net ion loss. Tamoatas transferred from ABW to BW or WW presented a net ion influx, but pirarucus showed only small changes on net ion efflux. These results allow us to conclude that tamoatas and pirarucus present differences in terms of ion regulation but that the general aspects of the ion flux are similar: (1) exposure to ABW led to net ion loss; (2) transfer from BW to WW or vice-versa induced only minor changes on net ion fluxes. These observations demonstrate that any osmoregulatory difficulties encountered by either species during changes between these latter two waters can be easily overcome.

Uso de sal durante o transporte de juvenis (1kg de pirarucu (Arapaima gigas Use of salt during the transportation of pirarucu juveniles (1kg (Arapaima gigas

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Franmir Rodrigues Brandão

2008-12-01

Full Text Available O pirarucu é um peixe nativo da bacia Amazônica cuja criaçãovem sendo estudada em algumas partes do Brasil. O objetivo desse trabalho foi testar o sal de cozinha como mitigador de estresse durante o transporte de juvenis de pirarucu (1 kg. Para isso, os peixes foram transportados em dois diferentes sistemas: caixas sem adição de oxigênio (transporte aberto e sacos plásticos com injeção de oxigênio e lacrado (transporte fechado. Nos dois sistemas os peixes foram transportados em três diferentes tratamentos: controle e duas concentrações de sal na água (3 e 6 g.L-1. Após o transporte os peixes foram colocados em viveiros para avaliação da recuperação. Foram analisados parâmetros do metabolismo energético (cortisol, glicose e lactato e de hematologia (hematócrito. O sal de cozinha não foi eficiente em mitigar as respostas de estresse no transporte em nenhum dos dois sistemas de transporte estudados.Pirarucu is a native fish of the Amazon basin, widely used in culture systems in some parts of Brazil. The objective of this work was to test table salt as a stress mitigator during transportation of pirarucu juveniles (1kg. Fish were transported by two different systems: boxes without addition of oxygen (open system and closed oxygen filled plastic bags (closed system. To both systems fish were transported at three different treatments: control and two table salt concentration (3 and 6 gL-1. After transportation, fish were stocked in ponds to monitor recovery. Metabolic (cortisol, glucose and lactate and hematological (hematocrit parameters were analyzed. The table salt was not efficient in mitigating stress response during the both tested transport system.

Yield and composition of pirarucu fillet in different weight classes - doi: 10.4025/actascianimsci.v33i1.10843 Yield and composition of pirarucu fillet in different weight classes - doi: 10.4025/actascianimsci.v33i1.10843

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Samanta Eulles Quixaba Carvalho

2011-02-01

Full Text Available The fillet yield and quantity of waste generated after processing are important for planning and evaluating the growth performance of species and systems of aquaculture production in Brazil. The pirarucu (Arapaima gigas is among the species with desirable characteristics for intensive fish with high market value. The objective was to evaluate the performance of pirarucu fillet in different weight classes: 7.0 to 9.0 kg (group I, 11.0 to 13.0 kg (group II and 14.0 to 17.0 kg (group III. The fillet yield presented no significant difference between groups. The composition showed significant differences (p The fillet yield and quantity of waste generated after processing are important for planning and evaluating the growth performance of species and systems of aquaculture production in Brazil. The pirarucu (Arapaima gigas is among the species with desirable characteristics for intensive fish with high market value. The objective was to evaluate the performance of pirarucu fillet in different weight classes: 7.0 to 9.0 kg (group I, 11.0 to 13.0 kg (group II and 14.0 to 17.0 kg (group III. The fillet yield presented no significant difference between groups. The composition showed significant differences (p < 0.05 for moisture (77.96 to 75.04% and ash (2.21 to 2.46%, while values of lipid and protein were similar between classes evaluated. In assessing the fat percentage per serving (loin, belly and tail there was higher fat deposition in the ventral part and in group III. Thus, it can be lessen the pirarucu with weight ranging from 7.0 to 9.0 kg, using shorter production cycles and obtaining better quality fillets by having a lower muscle percentage of lipids.

Isolation of the pituitary gonadotrophic α-subunit hormone of the giant amazonian fish: pirarucu (Arapaima gigas).

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Faria, M T; Carvalho, R F; Sevilhano, T C A; Oliveira, N A J; Silva, C F P; Oliveira, J E; Soares, C R J; Garcez, R; Santo, P R E; Bartolini, P

2013-06-01

The cDNAs of the α-subunit of the pituitary gonadotrophic hormones (GTHα) of fish of the order Osteoglossiformes or the superorder Osteoglossomorpha have never been sequenced. For a better understanding the phylogenetic diversity and evolution of PGHα in fish and for future biotechnological synthesis of the gonadotrophic hormones (ag-FSH and ag-LH), of Arapaima gigas, one of the largest freshwater fishes of the world, its GTHα cDNA was synthesized by reverse transcriptase and the polymerase chain reaction starting from total pituitary RNA. The ag-GTHα-subunit was found to be encoded by 348 bp, corresponding to a protein of 115 amino acids, with a putative signal peptide of 24 amino acids and a mature peptide of 91 amino acids. Ten cysteine residues, responsible for forming 5 disulfide linkages, 2 putative N-linked glycosylation sites and 3 proline residues, were found to be conserved on the basis of the known sequences of vertebrate gonadotrophic hormones. Phylogenetic analysis, based on the amino acid sequences of 38 GTHα-subunits, revealed the highest identity of A. gigas with members of the Acipenseriformes, Anguilliformes, Siluriformes and Cypriniformes (87.1-89.5 %) and the lowest with Gadiformes and Cyprinodontiformes (55.0 %). The obtained phylogenetic tree agrees with previous analysis of teleostei, since A. gigas, of the order of Osteoglossiformes, appears as the sister group of Clupeocephala, while Elopomorpha forms the most basal group of all other teleosts.

Braga nasuta (Cymothoidae: an ectoparasite of the Giant Amazonian fish Arapaima gigas (Osteoglossidae fingerlings cultured in the Amazon region in Northern Brazil

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Elson Cardoso de Jesus

2017-11-01

Full Text Available Isopods Cymothoidae are organisms that parasitize several fish species, both marine and freshwater, provoking important physiological alterations and secondary infections. The genus Braga was proposed to harbor three species of parasitic isopods in freshwater fish from South America: B. brasiliensis, B. cichlae and B. nasuta. Posteriorly, other four species were included: B. patagonica, B. amapaensis, B. fluviatilis and B. bachmanni. Regarding the geographical distribution of the genus, there are registers in Brazil, Argentina, Suriname and Paraguay. In this study, 3,625 fingerlings of pirarucu Arapaima gigas were examined from a commercial fish farm in the Amazon region, Pará State, to observe and identify possible parasites. A total of eleven ectoparasitic isopods were carefully removed from the body surface of the hosts and fixed in alcohol 70%. They were processed and identified as Braga nasuta. Parasitological indexes were prevalence of 0.303%, mean intensity of 1.000±0.000 and mean abundance of 0.003±0.055. This is the first report of B. nasuta in pirarucu fingerlings.

Efeito da densidade de estocagem na homogeneidade do crescimento de juvenis de pirarucu em ambiente confinado Stocking density effect on growth homogeneity of juvenile pirarucu in confined environments

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Bruno Adan Sagratzki Cavero

2003-01-01

Full Text Available O objetivo deste trabalho foi avaliar o efeito da densidade de estocagem sobre a homogeneidade do crescimento de juvenis de pirarucu (Arapaima gigas em tanques-rede de pequeno volume. Foram usados 12 tanques-rede de 1 m³ em um viveiro de 120 m² perfazendo três tratamentos (15, 20 e 25 peixes/m³ com quatro repetições. Os peixes foram estocados com peso médio inicial de 10,1±0,3 g e distribuídos homogeneamente (p>0,05 entre os tratamentos. Os coeficientes de variação do crescimento e do fator de condição não apresentaram diferenças significativas (p>0,05 ao contrário do consumo e da conversão alimentar aparente (pThe objective of this work was to evaluate the stocking density over fish growth homogeneity of pirarucu (Arapaima gigas juveniles in small volumes cages. Twelve 1 m³ netcages were used in a 120 m² earth pond consisting of three treatments (15, 20 and 25 fish/m³ with four repetitions each. Fish were stocked with an initial mean weight of 10.1±0.3 g and homogeneous distributed (p>0.05 between treatments. Coefficient of variation for growth and condition factor did not present significant (p>0.05 differences, contrary to consumption and apparent feed conversion (p<0.05. Consumption was inversely proportional to the increment of density, indicating that stockings densities increases are favorable to a better feed use. There were not any observed behavior differences between treatments. Juveniles pirarucu growth was not influenced by the stocking density or intraspecifics interactions.

Anestesia do pirarucu por aspersão da benzocaína diretamente nas brânquias Anesthesia in pirarucu by benzocaine sprays in the gills

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Alexandre Honczaryk

2010-02-01

Full Text Available O pirarucu (Arapaima gigas é um peixe que pode atingir mais de 2m e 100kg. No entanto, por ser um animal de grande porte, o risco de acidentes é bastante elevado durante o manejo. Logo, anestésicos são essenciais para segurança no trabalho. Nesse contexto, estudou-se a possibilidade do uso da benzocaína aspergida diretamente nas brânquias do pirarucu, para indução à anestesia do peixe pulmonado da Amazônia sem riscos de afogamento. Foram testadas as concentrações de 25, 50 e 75mg L-1 em indivíduos adultos (55,1±7,0kg e 1,80±0,1m e as concentrações de 50 e 100mg L-1 em juvenis (6,0±0,6kg e 87,2±5,6cm. Os resultados mostram viabilidade do uso da benzocaína aspergida diretamente nas brânquias do pirarucu em concentrações de 50 a 100mg L-1, proporcionando anestesia com ausência de movimentação por aproximadamente 2min, tempo suficiente para procedimentos rápidos, como biometria, injeções, marcação, coleta de raspados de muco na superfície do corpo e brânquias. Mortalidade de animais não foi observada mesmo um mês após os testes.Pirarucu (Arapaima gigas is a fish that may achieve more than 2m and 100kg. Thus handling of this fish may impose risks to workers. In this way, anesthetics are imperative for safety at work, but usual anesthetics baths are not feasible for pirarucu because of the fish size and the species pulmonary respiration. Pirarucu may die drowned if submersed as the other fishes in anesthetics baths. Therefore, this work tested the possible use of benzocaine directly sprinkled in the gills of pirarucu. In the first experiment, benzocaine solutions in concentrations of 25, 50 and 75mg L-1 were tested for adult fish (55.1±7.0kg e 1.80±0.1m. In the second one, the anesthetic in concentrations of 50 and 100mg L-1 were tested for juveniles (6.0±0.6kg e 87.2±5.6cm. Benzocaine sprinkled directly in the gills of pirarucu showed to be an efficient anesthetic both for juveniles and adult fish. It was

Tolerância de juvenis de pirarucu ao aumento da concentração de amônia em ambiente confinado Tolerance of pirarucu juveniles to increasing ammonia concentration in a closed environment

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Bruno Adan Sagratzki Cavero

2004-05-01

Full Text Available O objetivo deste trabalho foi avaliar a tolerância de juvenis de pirarucu, Arapaima gigas, a concentrações crescentes de amônia na água. Oito peixes (2,6±0,4 kg e 70,5±4,1 cm de comprimento foram distribuídos aleatoriamente em quatro tanques (0,8x0,9x2,6 m com 410 L de água tamponada com Na2PO4 e HCl, ambos a 0,1 M, onde ficaram por 33 dias. As concentrações de amônia no plasma sanguíneo dos peixes e na água foram determinadas pelo método do salicilato. A glicose plasmática e os níveis de amônia aumentaram proporcionalmente à concentração de amônia na água. Juvenis de pirarucu toleram altas concentrações de amônia na água.The objective of this work was to evaluate the tolerance of pirarucu (Arapaima gigas juveniles to increasing concentrations of ammonia in the water. Eight fish (2.6±0.4 kg and 70.5±4.1 cm length were evenly distributed in four tanks (0.8x0.9x2.6 m with 410 L of water buffered with Na2PO4 (0.1 M and HCl (0.1 M, where they were kept for 33 days. Ammonia concentrations in the fish blood plasma and in the water were determined by the salicilate method. Plasma glucose and ammonia levels increased proportionally to the concentration of ammonia in the water. Pirarucu juveniles tolerate high concentrations of ammonia in the water.

Yield and composition of pirarucu fillet in different weight classes = Rendimento e composição do filé de pirarucu em diferentes classes de peso

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Fabíola Helena dos Santos Fogaça

2011-01-01

Full Text Available The fillet yield and quantity of waste generated after processing areimportant for planning and evaluating the growth performance of species and systems of aquaculture production in Brazil. The pirarucu (Arapaima gigas is among the species with desirable characteristics for intensive fish with high market value. The objective was to evaluate the performance of pirarucu fillet in different weight classes: 7.0 to 9.0 kg (group I, 11.0 to 13.0 kg (group II and 14.0 to 17.0 kg (group III. The fillet yield presented no significant difference between groups. The composition showed significantdifferences (p O rendimento de filé e a quantidade de resíduos gerada após o processamento são importantes para o planejamento e a avaliação do desempenho zootécnico de espécies e dos sistemas de produção aquícola brasileiros. O pirarucu (Arapaima gigas está entre as espécies com características desejáveis para piscicultura intensiva e com alto valor de mercado. O objetivo do trabalho foi avaliar o rendimento do filé de pirarucu em diferentes classes de peso: 7,0 a 9,0 kg (grupo I, 11,0 a 13,0 kg (grupo II e 14,0 a 17,0 kg (grupo III. O rendimento de filé não apresentou diferença significativa entre os grupos avaliados. A composição apresentou diferenças significativas (p < 0,05 para umidade (77,96 a 75,04% e cinzas (2,21 a 2,46%, enquanto os valores de lipídeos e proteína bruta foram similares entreas classes avaliadas. Na avaliação da porcentagem de lipídios por porção (lombo, barriga e cauda houve maior deposição de gordura na parte ventral e no grupo III. Dessa forma, pode-se abater o pirarucu com média de peso entre 7,0 a 9,0 kg, utilizando-se ciclos de produção mais curtos e obtendo-se filés com melhor qualidade por apresentarem menor porcentagem muscular de lipídio.

Characterization of microbiota in Arapaima gigas intestine and isolation of potential probiotic bacteria.

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do Vale Pereira, G; da Cunha, D G; Pedreira Mourino, J L; Rodiles, A; Jaramillo-Torres, A; Merrifield, D L

2017-11-01

The aim of this study was to determine the intestinal microbiota of pirarucu (Arapaima gigas) in different growth stages (adult and fingerlings) and to isolate and identify potential probiotic bacteria. High-throughput sequencing analysis of the intestinal contents revealed that the majority of sequences belonged to the Proteobacteria, Fusobacteria and Firmicutes phyla. At the genus level, the greatest number of sequences belonged to Bradyrhizobium in adult fish, while Cetobacterium was the most abundant in juvenile fish. Twenty-three lactic-acid bacteria (LABs) were isolated on MRS agar from healthy juvenile fish. The isolates were tested in vitro for probiotic properties. Two isolates (identified as strains of Lactococcus lactis subsp. lactis and Enterococcus faecium) displayed antagonism against all 10 pathogens tested, were nonhaemolytic and maintained good viability for at least 3 weeks when supplemented to fish diets. The presence of a number of antibiotic resistance genes (ARGs), conferring resistance to erythromycin, tetracycline and chloramphenicol, was investigated by PCR. The absence of ARGs investigated the potential to antagonize pathogens, and favourable growth and survival characteristics indicate that these autochthonous isolates have the potential to be considered probiotics, which will be studied in future in vivo experiments. This study has demonstrated, for the first time, the normal microbiota in the A. gigas intestine during different life stages and the presence of LAB strains. It also demonstrated LAB antibiotic resistance and antagonistic behaviour against pathogens isolated from the same fish. © 2017 The Society for Applied Microbiology.

The influence of dietary vitamin C and E supplementation on the physiological response of pirarucu, Arapaima gigas, in net culture.

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de Menezes, Glauber Cruz; Tavares-Dias, Marcos; Ono, Eduardo Akifumi; de Andrade, Jaqueline Inês Alves; Brasil, Elenice Martins; Roubach, Rodrigo; Urbinati, Elisabeth Criscuolo; Marcon, Jaydione Luiz; Affonso, Elizabeth Gusmão

2006-10-01

This study evaluated the efficacy of dietary vitamin C (ascorbic acid or AA), vitamin E (alpha-tocopherol or alpha-T), and C+E supplementation on the blood parameters of Arapaima gigas grown in net cages for 45 days. Four treatments were tested: control (commercial feed); C800; E500 and C+E (800+500) with supplementation of 800 mg AA kg(-1), 500 mg alpha-T kg(-1) and 800+500 mg AA+alpha-T kg(-1), respectively. Hematocrit (Ht), red blood cells (RBC), and hemoglobin concentration (Hb) (oxidative status indicators), thrombocytes and leukocytes (immunological indicators), plasma protein and glucose were evaluated. Fish fed vitamin C and C+E supplemented diets showed greater weight gain and survival. Dietary vitamin C and C+E diet supplementation resulted in increased Ht, Hb, RBC, MCHC, total leukocytes, total proteins, thrombocytes and eosinophils compared to the control and alpha-T. The alpha-tocopherol-supplemented diet reduced the number of total thrombocytes, lymphocytes and neutrophils and increased glucose and eosinophils relatively to the control. In general, leukocytes and thrombocytes were good indicators of the efficiency of vitamin on the defense mechanism of the A. gigas reared in cages. Results indicate that high alpha-T diet supplementation provides no benefit for the maintenance of the oxidative or the immunological status of A. gigas. However, it was demonstrated that high dietary AA improves A. gigas immunological status. Red blood cell indices and immune system indicators showed no synergistic effect between the vitamins after supplementing the A. gigas diet with alpha-T+AA.

Conservation strategies for Arapaima gigas (Schinz, 1822) and the Amazonian várzea ecosystem

OpenAIRE

Hrbek,T.; Crossa,M.; Farias,IP.

2007-01-01

In the present study we report a spatial autocorrelation analysis of molecular data obtained for Arapaima gigas, and the implication of this study for conservation and management. Arapaima is an important, but critically over-exploited giant food fish of the Amazonian várzea. Analysis of 14 variable microsatellite loci and 2,347 bp of mtDNA from 126 individuals sampled in seven localities within the Amazon basin suggests that Arapaima forms a continuous population with extensive genetic excha...

Tissue-dwelling philometrid nematodes of the fish Arapaima gigas in Brazil.

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Santos, C Portes; Moravec, F

2009-09-01

The nematode Rumai rumai Travassos, 1960 (Philometridae) is redescribed from the tissues of the mouth, tongue, operculum and head of the arapaima, Arapaima gigas (Schinz) (Osteichthyes), from Mexiana Island, Amazon River Delta, Brazil. Additional data on the related Nilonema senticosum (Baylis, 1922) from the same host and locality are also presented. Rumai rumai is characterized by the presence of a sclerotized formation on the female cephalic end, dorsal and ventral cephalic projections, the shape and structure of the oesophagus and a conical caudal extremity. Males of both R. rumai and N. senticosum, specific parasites of the ancient arapaima fish in the Neotropics, remain unknown. The relationship between these tissue-dwelling nematodes and the aquaculture system of Mexiana Island is commented upon.

DIAGNOSIS OF PIRARUCU FISH TRADE IN MARKETS AND FAIRS OF SANTARÉM, PARÁ

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Nayane de Macêdo Nicácio Silva

2016-12-01

Full Text Available This study accomplished adiagnos is of the pirarucu fish (Arapaima gigas trading in sale points of Santarém-Pará.  The data were collected weekly through interviews with the trades people at the sale points, in a period from November/2012 to November/2014.The information were scanned in relational databases on Access Platform and analyzed through descriptive statistics. They were applied 354 questionnaires to the trades people who presented the pirarucu fish for sale. It was verified that the payment to the providers is made in cash by the most part of the trades people (93%, which are mostly fishermen of the region (84%. The sliced fish products (50% and fresh piece (33% were the most available forms on the selling stalls. It was verified that the defense period causes changes in the pirarucu fish trading process. Some trades people denied giving information, but the obtained results shows important data to the management of this resource in the region. Keywords: Lower Amazonas; commercialization; Arapaimatidae.

Evaluación de la densidad y alimentación en el desempeño reproductivo del pirarucu arapaima gigas en cautiverio

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Franco Rojas, Hugo Hernán

2011-01-01

Arapaima gigas, nativo de la cuenca amazónica es uno de los peces de agua dulce de mayor tamaño del mundo, es llamado Paiche en Perú y Pirarucú en Brasil y Colombia. Para reducir la sobrepesca ejercida sobre el Pirarucú se han desarrollado protocolos para su producción en cautiverio y la reproducción de esta especie ha sido reportada en condiciones controladas. Los reportes existentes en la literatura sobre el manejo de reproductores para la obtención de crías producidas en cautiverio no son ...

Digestibility of animal and vegetable protein ingredients by pirarucu juveniles, Arapaima gigas

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Filipe dos Santos Cipriano

Full Text Available ABSTRACT The objective of this study was to determine the apparent digestibility coefficients of energy, protein, and amino acids in protein ingredients by pirarucu juveniles. A test was conducted with six protein ingredients: meat and bone meal, fish meal, hydrolyzed feather meal, poultry by-product meal, soybean meal, and corn gluten meal. Three repetitions were used for each tested ingredient. A reference feed was used with 430 g kg−1 crude protein and 19.63 kJ g−1 gross energy. The test feeds consisted of the replacement of 30% of the reference feeds with the test ingredients. Chromium oxide was added to the feeds at 1 g kg−1 as an external marker. Eighteen juveniles with an average weight of 235±36 g were used. The best apparent digestibility coefficients of protein were found for fish meal, followed by the poultry by-product meal and meat and bone meal. However, except for gluten, all the tested ingredients presented protein digestibilities above 0.70. The crude energy apparent digestibility coefficient was higher for animal ingredients, above 0.75, than for vegetable ingredients, which presented values below 0.60. Pirarucu efficiently uses the protein from the tested ingredients, regardless of origin. However, it has a preferential ability to use the energy from animal ingredients.

Apparent digestibility of energetic ingredients by pirarucu juveniles, Arapaima gigas (Schinz, 1822

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Filipe dos Santos-Cipriano

2015-09-01

Full Text Available An understanding of feed ingredient digestibility for the pirarucu is a fundamental step in the development of feeds that promote proper growth of the specie while in captivity. A digestibility trial was conducted with four treatments in triplicate (corn starch, corn, rice bran and wheat bran to evaluate the digestibility of dry matter, gross energy, crude protein and amino acids by the pirarucu. We used indirect methodology with the inclusion of chromium oxide at 0.1% in the feeds. In total, 18 juveniles were used, with an average live weight of 235 ± 36 g. The sampled juveniles were trained to consume the feeds prior to testing. The corn and cornstarch presented the best apparent digestibility coefficients (ADCs of dry matter, with 76.37% and 70.66%, respectively, followed by rice bran (46.23% and wheat bran (45.13%. The best ADCs of crude protein were observed in corn (93.44% and cornstarch (90.94% compared to rice bran (68.23% and wheat bran (68.58%. There was no significant difference in the ADC of gross energy; the values ranged from 47.10% for corn starch to 40.10% for corn. The corn and corn starch presented the best ADCs for all the amino acids evaluated, followed by rice bran and wheat bran.

Molecular and functional characterization of a fads2 orthologue in the Amazonian teleost, Arapaima gigas.

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Lopes-Marques, Mónica; Ozório, Rodrigo; Amaral, Ricardo; Tocher, Douglas R; Monroig, Óscar; Castro, L Filipe C

2017-01-01

The Brazilian teleost Arapaima gigas is an iconic species of the Amazon. In recent years a significant effort has been put into the farming of arapaima to mitigate overfishing threats. However, little is known regarding the nutritional requirements of A. gigas in particular those for essential fatty acids including the long-chain polyunsaturated fatty acids (LC-PUFA) eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). The ability to biosynthesize LC-PUFA is dependent upon the gene repertoire of fatty acyl desaturases (Fads) and elongases (Elovl), as well as their fatty acid specificities. In the present study we characterized both molecularly and functionally an orthologue of the desaturase fatty acid desaturase 2 (fads2) from A. gigas. The isolated sequence displayed the typical desaturase features, a cytochrome b 5 -domain with the heme-binding motif, two transmembrane domains and three histidine-rich regions. Functional characterization of A. gigas fads2 showed that, similar to other teleosts, the A. gigas fads2 exhibited a predominant Δ6 activity complemented with some capacity for Δ8 desaturation. Given that A. gigas belongs to one of the oldest teleostei lineages, the Osteoglossomorpha, these findings offer a significant insight into the evolution LC-PUFA biosynthesis in teleosts. Copyright © 2016 Elsevier Inc. All rights reserved.

Digestibilidade aparente de dietas práticas com diferentes relações energia: proteína em juvenis de pirarucu Apparent digestibility coefficient of practical diets with different energy: protein ratios for pirarucu juveniles

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Eduardo Akifumi Ono

2008-02-01

Full Text Available O objetivo deste trabalho foi determinar a digestibilidade aparente de nutrientes e energia de dietas para juvenis de pirarucu, Arapaima gigas. Foram testadas oito dietas, contendo quatro relações energia:proteína (11, 10,1, 9, 8 kcal energia digestível por grama de proteína bruta e duas fontes de energia não-protéica (óleo de soja e gordura de aves, em esquema fatorial 4x2, com três repetições. Foram estocados 240 juvenis de pirarucu com peso de 96,8±2,3 g, distribuídos em 24 tanques cilíndricos com fundo cônico, adaptados para a coleta de fezes (sistema Guelph modificado. Os peixes foram alimentados duas vezes ao dia até a saciedade aparente com as dietas experimentais contendo 0,5% de óxido de cromo, como marcador inerte para determinação dos coeficientes de digestibilidade aparente. As dietas com a relação energia:proteína de 9 kcal energia digestível por grama de proteína bruta apresentaram os menores coeficientes de digestibilidade aparente da matéria seca, proteína bruta e extrativo não nitrogenado. O maior coeficiente de digestibilidade aparente da gordura foi obtido com o uso do óleo de soja. A relação energia:proteína na dieta influencia os coeficientes de digestibilidade aparente dos macronutrientes e energia no pirarucu.The objective of this work was to determine the apparent digestibility of nutrients and energy of diets for pirarucu (Arapaima gigas juveniles. Eight experimental diets containing four energy:protein ratios (11, 10.1, 9, 8 kcal digestible energy per gram of crude protein and two non-protein energy sources (soybean oil and poultry fat were tested in a 4x2 factorial scheme, in triplicates. Two hundred and forty pirarucu juveniles weighting 96.8±2.3 g were distributed in 24 cylindrical-conical fiberglass tanks, adapted for feces collection (modified Guelph system. Fish were fed twice a day to apparent satiation, with experimental diets containing 0.5% of chromium oxide as inert marker in

Evidence of polygamy in the socially monogamous Amazonian fish Arapaima gigas (Schinz, 1822 (Osteoglossiformes, Arapaimidae

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Izeni Pires Farias

Full Text Available Arapaima gigas is one of the largest freshwater fishes of the world. It is socially monogamous, forming pairs, constructing a nest and providing parental care. We performed a paternity analysis under three scenarios in captive, semi-natural and natural areas using 10 microsatellite markers. As a positive control, we analyzed three pairs and their offspring isolated individually in artificial breeding ponds (a priori very high probability of monogamy. We then analyzed two samples of offspring from large artificial ponds with multiple adults but only one reproductive pair (a priori high probability of monogamy, two samples from semi-natural breeding station with multiple adults but only one reproductive pair (a priori high probability of monogamy, and a sample from a natural lake with multiple adults, some potentially breeding (a priori medium probability of monogamy. Analysis of patterns of Mendelian heredity suggested an extra-pair contribution for all broods except the positive controls. Similarly, results based on multilocus analysis estimated at least two sib-groups per nest. These results reject monogamy as a system of breeding in Arapaima gigas. From a management perspective, this behavior may be exploited to maintain genetic diversity in captive and as well in wild populations of Arapaima gigas.

Biomassa sustentável de juvenis de pirarucu em tanques-rede de pequeno volume

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Cavero Bruno Adan Sagratzki

2003-01-01

Full Text Available O objetivo deste trabalho foi estimar a biomassa sustentável de juvenis de pirarucu Arapaima gigas (Cuvier, 1829 mantidos em tanquesrede de pequeno volume. Durante 200 dias os peixes foram estocados em quatro tanques-rede de 1 m³, cada um com biomassa inicial total de 0,84±0,14 kg (21 peixes/tanque-rede. Os tanquesrede foram colocados em um viveiro de 50 m² com renovação constante de água. Os índices do fator de condição, da conversão alimentar, do crescimento específico e do ganho de biomassa revelaram que a biomassa sustentável de juvenis de pirarucu para a criação intensiva em tanques-rede de 1 m³ foi de aproximadamente 29 kg. O comprimento alcançado pelo peixe, no espaço reduzido do tanque-rede, é um fator limitante para manter bons índices zootécnicos.

Gender determination in the Paiche or Pirarucu (Arapaima gigas) using plasma vitellogenin, 17beta-estradiol, and 11-ketotestosterone levels.

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Chu-Koo, F; Dugué, R; Alván Aguilar, M; Casanova Daza, A; Alcántara Bocanegra, F; Chávez Veintemilla, C; Duponchelle, F; Renno, J-F; Tello, Salvador; Nuñez, J

2009-03-01

Arapaima gigas is an air-breathing giant fish of Amazonian rivers. Given its great economic and cultural importance, the aquaculture development of this species represents an evident solution to face the decline of wild populations. In captivity, reproduction occurs generally in large earthen ponds where stocks of a few tens of brooders are maintained together at the beginning of the rainy season (December-March in the Peruvian Amazon). Fry production relies on the spontaneous formation of male and female pairs, which build a nest, delimit a territory and guard the offspring for at least 20 days from other congeners and predators. However, as sex determination of A. gigas is not possible by morphological criteria, it is very difficult to optimize reproduction conditions and fry production in each pond, which seriously hampers the culture of this species. This situation prompted us to develop sexing methodologies based on (1) the detection of female specific plasma Vitellogenin (Vtg) using an enzyme immuno assay (EIA), and (2) the determination of plasma 17beta-estradiol and 11-ketotestosterone levels for immature specimens. The Vtg purification was performed by electro-elution after polyacrilamide gel electrophoresis (PAGE) from plasma of 17beta-estradiol treated A. gigas juveniles. Two different Vtg molecules were isolated, (Vtg(1) and Vtg(2)) with 184 and 112 kDa apparent molecular masses, respectively, and two antibodies were raised in rabbits for each Vtg molecule. Adult fish were 100% accurately sexed by Vtg EIA, while 100% of immature fish and 95% of adults were accurately sexed by 17beta-Estradiol and 11-Ketestosterone ratios. We also observed different color pattern development in male and female adult fish (6-year-olds) around the reproductive period.

High Infestation by Dawestrema cycloancistrioides in Arapaima gigas Cultured in the Amazon Region, Peru

OpenAIRE

Mathews, Patrick D.; Malheiros, Antonio F.; Vasquez, Narda D.; Chavez, Milton D.

2014-01-01

The aim of this study was to evaluate the presence of Dawestrema cycloancistrioides in semi-intensive fish farming of fingerlings of Arapaima gigas. Between September and November 2013, 60 individuals of A. gigas born in captivity, were collected in three concrete ponds, from a semi-intensive fish farm in the Peruvian Amazon. For the study of sclerotized structures, parasites were fixed in a solution of ammonium picrate glycerine and mounted in Canada balsam. To visualize internal structures,...

Efeito da densidade de estocagem sobre a eficiência alimentar de juvenis de Pirarucu (Arapaima gigas em ambiente confinado Stocking density effect on alimentary efficiency in juveniles pirarucu (Arapaima gigas in a confined environment

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Bruno Adan Sagratzki Cavero

2003-12-01

Full Text Available O objetivo deste trabalho foi verificar o efeito da densidade de estocagem sobre a eficiência alimentar de juvenis de pirarucu em tanques-rede de pequeno volume. Foram usados 12 tanques-rede de 1m³ em um viveiro de 120m³ perfazendo três tratamentos (15, 20 e 25 peixes/m³ com quatro repetições. Os peixes foram alimentados com ração comercial extrusada com 45% de proteína bruta, 3 vezes ao dia, durante 45 dias. O peso médio inicial foi 10,1 ± 0,3 g, e a análise estatística da pesagem inicial mostrou que todos os lotes eram homogêneos. O desempenho dos peixes não apresentou diferença significativa entre os tratamentos (p>0,05. Entretanto, a eficiência alimentar melhorou com o aumento da densidade de estocagem (pThe objective of this study was to verify the effect of stocking density in the feeding efficiency of juvenile pirarucu held in small volume cages. Twelve 1-m³ cages were used inside a 120-m³ fishpond encompassing three treatments (15, 20 and 25 peixes/m³ with four replicates each. Fish were fed a commercial extruded feed with 45% crude protein content, three times a day for 45 days. Initial mean weight was 10.1 ± 0.3 g, and statistical analysis of initial fish weight showed that all lots were homogeneous. Fish performance did not present significant differences among treatments (p>0.05. However, feed efficiency improved, as stocking density increased (p<0.05. Stocking density influenced the feeding efficiency of juvenile pirarucu held in small volume cages.

Hepatic Calyptospora sp. (Apicomplexa) infection in a wild-born, aquarium-held clutch of juvenile arapaima Arapaima gigas (Osteoglossidae).

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Bonar, Christopher J; Poynton, Sarah L; Schulman, F Yvonne; Rietcheck, Randall L; Garner, Michael M

2006-06-12

From Manaus, Brazil, 12 juvenile arapaima Arapaima gigas were imported to the United States and sent to 2 public aquaria, 1 private hobbyist, and 1 retailer. All 12 fish became ill within 4 to 6 wk of arrival, with signs of anorexia, lethargy, depigmentation, and ascites, and subsequently died despite antibiotic and anthelminthic therapy. Gross necropsies of 7 fish revealed serosanguinous coelomic effusion in all 7 fish, and branchial monogeneosis in 3 of 6 fish. The monogeneans from 1 fish were identified as Dawestrema cycloancistrium (Ancyrocephalinae). Histologic examination of 7 fish showed a variety of lesions, principally in the liver, gills, brain and gastro-intestinal tract. Numerous coccidian oocysts replaced 15 to 33% of the liver parenchyma in 6 of 7 fish examined. Light and transmission electron microscopy revealed that each oocyst contained 4 pyriform sporocysts bearing numerous sporopodia on their tapering, posterior end; approximately 25 to 30% of the length of the sporocyst was adorned. Each sporocyst was covered by a thin, membranous veil, contained 2 sporozoites, and stained brilliant pink with the Ziehl-Neelsen acid-fast method. This morphology is consistent with that of Calyptospora sp. (Lack of fresh material precluded determination to species.) This is the first report of Calyptospora sp. in arapaima. The Calyptospora sp. infection probably contributed to the morbidity and mortality of the captive arapaima.

Protective role of Arapaima gigas fish scales: structure and mechanical behavior.

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Yang, Wen; Sherman, Vincent R; Gludovatz, Bernd; Mackey, Mason; Zimmermann, Elizabeth A; Chang, Edwin H; Schaible, Eric; Qin, Zhao; Buehler, Markus J; Ritchie, Robert O; Meyers, Marc A

2014-08-01

The scales of the arapaima (Arapaima gigas), one of the largest freshwater fish in the world, can serve as inspiration for the design of flexible dermal armor. Each scale is composed of two layers: a laminate composite of parallel collagen fibrils and a hard, highly mineralized surface layer. We review the structure of the arapaima scales and examine the functions of the different layers, focusing on the mechanical behavior, including tension and penetration of the scales, with and without the highly mineralized outer layer. We show that the fracture of the mineral and the stretching, rotation and delamination of collagen fibrils dissipate a significant amount of energy prior to catastrophic failure, providing high toughness and resistance to penetration by predator teeth. We show that the arapaima's scale has evolved to minimize damage from penetration by predator teeth through a Bouligand-like arrangement of successive layers, each consisting of parallel collagen fibrils with different orientations. This inhibits crack propagation and restricts damage to an area adjoining the penetration. The flexibility of the lamellae is instrumental to the redistribution of the compressive stresses in the underlying tissue, decreasing the severity of the concentrated load produced by the action of a tooth. The experimental results, combined with small-angle X-ray scattering characterization and molecular dynamics simulations, provide a complete picture of the mechanisms of deformation, delamination and rotation of the lamellae during tensile extension of the scale. Copyright © 2014 Acta Materialia Inc. All rights reserved.

Influência do período de alimentação no consumo e ganho de peso do pirarucu Influence of feeding period on consumption and weight gain of pirarucu

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Roger Crescêncio

2005-12-01

Full Text Available O objetivo deste trabalho foi verificar o período preferencial de consumo alimentar do pirarucu, Arapaima gigas, e a influência de diferentes turnos de alimentação no consumo e ganho de peso dessa espécie. Foram testados três tratamentos: alimentação diurna (peixes alimentados às 9h e 15h, alimentação noturna (peixes alimentados às 21h e 3h e alimentação contínua (peixes alimentados às 9h, 15h, 21h e 3h. Cada tratamento foi avaliado em triplicata, com cada unidade experimental formada por oito peixes, com peso médio de 313 g, estocados em tanques-redes de 1 m³ (1x1x1 m. Os nove tanques-redes foram alocados em um viveiro escavado de 120 m². O experimento durou 60 dias. A alimentação contínua promoveu maiores ganhos de peso e biomassa, taxa de crescimento específico e consumo total. Os tratamentos alimentação diurna e alimentação noturna apresentaram ganho de peso semelhante, porém, a alimentação diurna apresentou a melhor conversão alimentar. O período preferencial de alimentação do pirarucu foi o noturno, principalmente no começo da noite. Os dados deste estudo indicam que o horário de preferência alimentar não é o melhor horário de alimentação do pirarucu, em uma criação comercial. O período de alimentação mais indicado para a espécie, baseado na capacidade de conversão alimentar, é o diurno.The objective of this study was to verify pirarucu Arapaima gigas preferential time of feeding, and the influence of different feeding periods on consumption and weight gain of this species. Three treatments were tested: diurnal feeding (fish fed at 9h and 15h, nocturnal feeding (fish fed at 21h and 3h, and continuous feeding (fish fed at 9h, 15h, 21h and 3h. Each treatment was evaluated in triplicate, and each trial unit had eight fishes with 313 g average weight, stoked into a 1 m³ (1x1x1 m net cage. The nine net cages were located on a 120 m² earth pond. The trial lasted for 60 days. Continuous feeding

Rapid and inexpensive analysis of genetic variability in Arapaima gigas by PCR multiplex panel of eight microsatellites.

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Hamoy, I G; Santos, E J M; Santos, S E B

2008-01-22

The aim of the present study was the development of a multiplex genotyping panel of eight microsatellite markers of Arapaima gigas, previously described. Specific primer pairs were developed, each one of them marked with either FAM-6, HEX or NED. The amplification conditions using the new primers were standardized for a single reaction. The results obtained demonstrate high heterozygosity (average of 0.69) in a Lower Amazon population. The multiplex system described can thus be considered a fast, efficient and inexpensive method for the investigation of genetic variability in Arapaima populations.

Influence of diets supplemented with vitamins C and E on pirarucu (Arapaima gigas) blood parameters.

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de Andrade, Jaqueline Inês Alves; Ono, Eduardo Akifumi; de Menezes, Glauber Cruz; Brasil, Elenice Martins; Roubach, Rodrigo; Urbinati, Elisabeth Criscuolo; Tavares-Dias, Marcos; Marcon, Jaydione Luiz; Affonso, Elizabeth Gusmão

2007-04-01

This study evaluated the influence of diets supplemented with 500, 800, 1200 mg kg-1 of vitamin C (ascorbic acid or AA) and vitamin E (alpha-tocopherol or alpha-T) on the physiological responses of pirarucu fed for 2 months. Weight and mortality were not affected by dietary vitamin type or their concentrations. Significant increase (p<0.05) on the red blood cells count was obtained on treatments with 800 and 1200 mg AA kg-1 and on the hemoglobin concentration on treatment with 500 mg alpha-T kg-1 relatively to control. Mean corpuscular volume presented a significant decrease (p<0.05) on treatment with 800 and 1200 mg AA kg-1 when compared to control. Mean corpuscular hemoglobin concentration was significantly high (p<0.05) on treatment with 500 mg alpha-T kg-1. Only in vitamin C treatments, we noticed a significant increase (p<0.05) in the number of leucocytes relative to control. All fish in the vitamin-supplemented treatments, except 500 mg AA kg-1, had high total protein values compared to control. Fish treated with 800 or 1200 mg alpha-T kg-1 also showed increases in plasma glucose concentrations. Our results suggest that 800 and 1200 mg AA kg-1 are probably the most suitable concentrations for pirarucu diets, although high vitamin E diets are not necessary for quantitative leucocyte increases for this species.

Conservation strategies for Arapaima gigas (Schinz, 1822) and the Amazonian várzea ecosystem.

Science.gov (United States)

Hrbek, T; Crossa, M; Farias, I P

2007-12-01

In the present study we report a spatial autocorrelation analysis of molecular data obtained for Arapaima gigas, and the implication of this study for conservation and management. Arapaima is an important, but critically over-exploited giant food fish of the Amazonian várzea. Analysis of 14 variable microsatellite loci and 2,347 bp of mtDNA from 126 individuals sampled in seven localities within the Amazon basin suggests that Arapaima forms a continuous population with extensive genetic exchange among localities. Weak effect of isolation-by-distance is observed in microsatellite data, but not in mtDNA data. Spatial autocorrelation analysis of genetic and geographic data suggests that genetic exchange is significantly restricted at distances greater than 2,500 km. We recommend implementing a source-sink metapopulation management and conservation model by proposing replicate high quality várzea reserves in the upper, central, and lower Amazon basin. This conservation strategy would: 1) preserve all of the current genetic diversity of Arapaima; 2) create a set of reserves to supply immigrants for locally depleted populations; 3) preserve core várzea areas in the Amazon basin on which many other species depend. We stress that conservation strategies should not only preserve current genetic diversity, but also the evolutionary processes which have generated the observed patterns.

Eggs hatching and oncomiracidia lifespan of Dawestrema cycloancistrium, a monogenean parasitic on Arapaima gigas.

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Maciel, Patricia Oliveira; Muniz, Celli Rodrigues; Alves, Rosiana Rodrigues

2017-11-30

Within the production chain of the Arapaima gigas (pirarucu), sanitary issues are still faced at the fingerling phase regarding infestations by the monogenean Dawestrema cycloancistrium. The present study had the objectives of describing the morphology and development phases of this parasite's eggs and oncomiracidia and determining the hatching time and lifespan of the oncomiracidia at different temperatures. D. cycloancistrium eggs were oval and elongated and had a single long appendage at one pole. The egg development was divided into four phases: embryonated egg, developing egg, larva appearance and ecloded egg. They were found in four forms: isolated in gill filaments; grouped in clusters that were anchored in a gill filament; grouped in clusters and entangled in part of a dead adult monogenean; and grouped in clusters in the environment, fixed to a substrate. Eclosion occurred after 72-96h, with faster development at 29°C and 32°C than at 24°C. The morphology of the oncomiracidia were rounded and elongated. They had two pairs of pigmented eye-spots as well as two ciliated areas located on each lateral part of the body and another on the anterior part of the body. The lifespan of the D. cycloancistrium oncomiracidia were 50 and 58h at 24°C and 27°C, respectively. Larvae were found in the mucus, indicating that the oncomiracidia penetrated the host integument. Understanding reproductive aspects of the D. cycloancistrium monogenean is important for developing specific prophylactic management strategies in aquaculture and providing valuable data for further studies. Copyright © 2017 Elsevier B.V. All rights reserved.

Lethal dose and clinical signs of Aeromonas hydrophila in Arapaima gigas (Arapaimidae), the giant fish from Amazon.

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Dias, Marcia K R; Sampaio, Luciana S; Proietti-Junior, Aldo A; Yoshioka, Eliane T O; Rodrigues, Dália P; Rodriguez, Anselmo F R; Ribeiro, Ricardo A; Faria, Fernando S E D V; Ozório, Rodrigo O A; Tavares-Dias, Marcos

2016-05-30

Aeromonas hydrophila is causing substantial economic losses in world aquaculture. This study determined the tolerance limit (LD50-96h) of A. hydrophila in Arapaima gigas, and also investigated the clinical signs after intradermal inoculation. Arapaima gigas fingerlings were inoculated intraperitoneally with 0 (control), 1.0×10(5), 1.0×10(6), 1.0×10(7), 1.0×10(9) and 1.0×10(10)CFU/mL of A. hydrophila for the determination of LD50-96h, which was 1.8×10(8)CFU/mL. In another trial with intradermal inoculation of 1.8×10(8)CFU/mL A. hydrophila, there was a 91.6% of mortality between 8 and 23h, and several clinical signs were found. As follows: depigmentation in the tegument, lesions in the tail and fins, loss of balance, reduction of respiratory movements, hemorrhagic foci, necrotic hemorrhages in the kidney, liver and swim bladder, splenomegaly, ascites in the abdominal cavity and hyperemia, enlargement of the gall bladder, among other clinical signs observed. The results showed that A. gigas has a relative tolerance to A. hydrophila when compared to other Neotropical fish species. Copyright © 2016 Elsevier B.V. All rights reserved.

Conservation strategies for Arapaima gigas (Schinz, 1822 and the Amazonian várzea ecosystem

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T. Hrbek

Full Text Available In the present study we report a spatial autocorrelation analysis of molecular data obtained for Arapaima gigas, and the implication of this study for conservation and management. Arapaima is an important, but critically over-exploited giant food fish of the Amazonian várzea. Analysis of 14 variable microsatellite loci and 2,347 bp of mtDNA from 126 individuals sampled in seven localities within the Amazon basin suggests that Arapaima forms a continuous population with extensive genetic exchange among localities. Weak effect of isolation-by-distance is observed in microsatellite data, but not in mtDNA data. Spatial autocorrelation analysis of genetic and geographic data suggests that genetic exchange is significantly restricted at distances greater than 2,500 km. We recommend implementing a source-sink metapopulation management and conservation model by proposing replicate high quality várzea reserves in the upper, central, and lower Amazon basin. This conservation strategy would: 1 preserve all of the current genetic diversity of Arapaima; 2 create a set of reserves to supply immigrants for locally depleted populations; 3 preserve core várzea areas in the Amazon basin on which many other species depend. We stress that conservation strategies should not only preserve current genetic diversity, but also the evolutionary processes which have generated the observed patterns.

Competitividade da cadeia produtiva do Arapaima gigas, o pirarucu da Amazônia brasileira

OpenAIRE

Gleriani Torres Carbone Ferreira

2016-01-01

Com um quinto da água doce do planeta, o sistema fluvial da Amazônia apresenta um enorme potencial para piscicultura. De acordo com a FAO, em função das suas condições geográficas, o Brasil é um dos poucos países que tem condições de atender à crescente demanda mundial, podendo tornar-se um dos maiores produtores de peixes do mundo. A observação desse potencial amazônico motivou o desenvolvimento desta pesquisa que se debruça sobre a questão da competitividade da cadeia produtiva de Arapaima ...

High Infestation by Dawestrema cycloancistrioides in Arapaima gigas Cultured in the Amazon Region, Peru

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Patrick D. Mathews

2014-01-01

Full Text Available The aim of this study was to evaluate the presence of Dawestrema cycloancistrioides in semi-intensive fish farming of fingerlings of Arapaima gigas. Between September and November 2013, 60 individuals of A. gigas born in captivity, were collected in three concrete ponds, from a semi-intensive fish farm in the Peruvian Amazon. For the study of sclerotized structures, parasites were fixed in a solution of ammonium picrate glycerine and mounted in Canada balsam. To visualize internal structures, parasites were fixed in hot formaldehyde solution (4% for staining with Gomori’s trichrome. The parasitic indexes calculated were prevalence, mean intensity, and mean abundance. This study identified a high infestation of a monogenean D. cycloancistrioides in gills of A. gigas. The prevalence was 100%. The mean intensity and mean abundance of the parasite were 144.9 of parasites per individual. This study confirms the necessity of constant monitoring of fish in order to reduce fish mortality.

High Infestation by Dawestrema cycloancistrioides in Arapaima gigas Cultured in the Amazon Region, Peru.

Science.gov (United States)

Mathews, Patrick D; Malheiros, Antonio F; Vasquez, Narda D; Chavez, Milton D

2014-01-01

The aim of this study was to evaluate the presence of Dawestrema cycloancistrioides in semi-intensive fish farming of fingerlings of Arapaima gigas. Between September and November 2013, 60 individuals of A. gigas born in captivity, were collected in three concrete ponds, from a semi-intensive fish farm in the Peruvian Amazon. For the study of sclerotized structures, parasites were fixed in a solution of ammonium picrate glycerine and mounted in Canada balsam. To visualize internal structures, parasites were fixed in hot formaldehyde solution (4%) for staining with Gomori's trichrome. The parasitic indexes calculated were prevalence, mean intensity, and mean abundance. This study identified a high infestation of a monogenean D. cycloancistrioides in gills of A. gigas. The prevalence was 100%. The mean intensity and mean abundance of the parasite were 144.9 of parasites per individual. This study confirms the necessity of constant monitoring of fish in order to reduce fish mortality.

Impact and fracture analysis of fish scales from Arapaima gigas.

Science.gov (United States)

Torres, F G; Malásquez, M; Troncoso, O P

2015-06-01

Fish scales from the Amazonian fish Arapaima gigas have been characterised to study their impact and fracture behaviour at three different environmental conditions. Scales were cut in two different directions to analyse the influence of the orientation of collagen layers. The energy absorbed during impact tests was measured for each sample and SEM images were taken after each test in order to analyse the failure mechanisms. The results showed that scales tested at cryogenic temperatures display fragile behaviour, while scales tested at room temperature did not fracture. Different failure mechanisms have been identified, analysed and compared with the failure modes that occur in bone. The impact energy obtained for fish scales was two to three times higher than the values reported for bone in the literature. Copyright © 2015 Elsevier B.V. All rights reserved.

A new approach to feed frequency studies and protein intake regulation in juvenile pirarucu.

Science.gov (United States)

Mattos, Bruno O DE; Nascimento, Eduardo C T; Santos, Aline A; Barreto, Kayck A; Sánchez-Vázquez, Francisco J; Fortes-Silva, Rodrigo

2017-01-01

This study aimed to investigate pirarucu's (Arapaima gigas) ability to trigger a self-feeding system to regulate protein intake between two standard diets that contained 39% and 49% of crude protein. The same system allowed the evaluation of daily feeding and locomotor activity rhythms. Eighteen fish (654.44±26.85g) were distributed into six 250 L tanks (3 fish/tank). Fish had free access to both diets (39% vs. 49% protein) by feeders (2 per tank), adapted to be activated by fish themselves. This system was connected to a computer system. After an adaptation period, fish learned to activate feeders and the mean food intake recorded was 2.14% of their body weight on a daily basis. Fish showed feeding (72.48%) and locomotor (72.49%) activity predominantly during the daytime, and daily variations of choice between diets, but fixed a protein intake feeding target at 44.53%. These results should be considered when discussing feeding behavior, feeding schedules and diet intake regulations.

Genetic diversity of Arapaima gigas (Schinz, 1822 (Osteoglossiformes: Arapaimidae in the Araguaia-Tocantins basin estimated by ISSR marker

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Carla A. Vitorino

Full Text Available The genetic diversity of the specimens of four natural populations of Arapaima from Araguaia-Tocantins basin was assessed within and among these stocks, using five primers for ISSR. COI (cytochrome c oxidase subunit I partial sequences confirmed that the specimens belongs to Arapaima gigas . The ISSR provided 168 loci, of which 165 were polymorphic. However, the number of loci for each population and expected heterozygosity values were low. AMOVA showed 52.63% intra-population variation and 47.37% inter-population variation. The F ST was high among all populations (F ST ≥ 0.25, however, the cluster analysis (PCoA and Bayesian inference showed three major groups: Araguaiana-MT + São Félix do Araguaia-MT, Novo Santo Antônio-MT and Itupiranga-PA. The genetic distance was not correlated with geographical distance. The ISSR marker revealed that the populations of the Araguaia-Tocantins are structured and have a low genetic diversity. These are the first data from a population analysis using molecular markers for A. gigas of Araguaia-Tocantins basins and may be used to define the best management strategies and conservation projects for this species.

RAPID-COMMUNICATION Genetic diversity and differentiation in natural populations of Arapaima gigas from lower Amazon revealed by microsatellites.

Science.gov (United States)

Fazzi-Gomes, P F; Melo, N; Palheta, G; Guerreiro, S; Amador, M; Ribeiro-Dos-Santos, A K; Santos, S; Hamoy, I

2017-02-08

Genetic variability is one of the important criteria for species conservation decisions. This study aimed to analyze the genetic diversity and the population differentiation of two natural populations of Arapaima gigas, a species with a long history of being commercially exploited. We collected 87 samples of A. gigas from Grande Curuai Lake and Paru Lake, located in the Lower Amazon region of Amazônia, Brazil, and genotyped these samples using a multiplex panel of microsatellite markers. Our results showed that the populations of A. gigas analyzed had high levels of genetic variability, which were similar to those described in previous studies. These two populations had a significant population differentiation supported by the estimates of F ST and R ST (0.06), by Bayesian analysis (K = 2), and by population assignment tests, which revealed a moderate genetic distance.

African Journal of Biotechnology - Vol 10, No 5 (2011)

African Journals Online (AJOL)

Molecular detection of Edwardsiella tarda with gyrB gene isolated from pirarucu, Arapaima gigas which is exhibited in an indoor private commercial aquarium · EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT. CH Choresca Jr, DK Gomez, SP Shin, DK Gomez, SP Shin, ...

A new approach to feed frequency studies and protein intake regulation in juvenile pirarucu

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BRUNO O. DE MATTOS

Full Text Available ABSTRACT This study aimed to investigate pirarucu's (Arapaima gigas ability to trigger a self-feeding system to regulate protein intake between two standard diets that contained 39% and 49% of crude protein. The same system allowed the evaluation of daily feeding and locomotor activity rhythms. Eighteen fish (654.44±26.85g were distributed into six 250 L tanks (3 fish/tank. Fish had free access to both diets (39% vs. 49% protein by feeders (2 per tank, adapted to be activated by fish themselves. This system was connected to a computer system. After an adaptation period, fish learned to activate feeders and the mean food intake recorded was 2.14% of their body weight on a daily basis. Fish showed feeding (72.48% and locomotor (72.49% activity predominantly during the daytime, and daily variations of choice between diets, but fixed a protein intake feeding target at 44.53%. These results should be considered when discussing feeding behavior, feeding schedules and diet intake regulations.

A comparative study of piscine defense: The scales of Arapaima gigas, Latimeria chalumnae and Atractosteus spatula.

Science.gov (United States)

Sherman, Vincent R; Quan, Haocheng; Yang, Wen; Ritchie, Robert O; Meyers, Marc A

2017-09-01

We compare the characteristics of the armored scales of three large fish, namely the Arapaima gigas (arapaima), Latimeria chalumnae (coelacanth), and Atractosteus spatula (alligator gar), with specific focus on their unique structure-mechanical property relationships and their specialized ability to provide protection from predatory pressures, with the ultimate goal of providing bio-inspiration for manmade materials. The arapaima has flexible and overlapping cycloid scales which consist of a tough Bouligand-type arrangement of collagen layers in the base and a hard external mineralized surface, protecting it from piranha, a predator with extremely sharp teeth. The coelacanth has overlapping elasmoid scales that consist of adjacent Bouligand-type pairs, forming a double-twisted Bouligand-type structure. The collagenous layers are connected by collagen fibril struts which significantly contribute to the energy dissipation, so that the scales have the capability to defend from predators such as sharks. The alligator gar has inflexible articulating ganoid scales made of a hard and highly mineralized enamel-like outer surface and a tough dentine-like bony base, which resist powerful bite forces of self-predation and attack by alligators. The structural differences between the three scales correspond with the attack of their predators, and show refined mechanisms which may be imitated and incorporated into superior bioinspired and biomimetic designs that are specialized to resist specific modes of predation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Transition in organ function during the evolution of air-breathing; insights from Arapaima gigas, an obligate air-breathing teleost from the Amazon.

Science.gov (United States)

Brauner, C J; Matey, V; Wilson, J M; Bernier, N J; Val, A L

2004-04-01

The transition from aquatic to aerial respiration is associated with dramatic physiological changes in relation to gas exchange, ion regulation, acid-base balance and nitrogenous waste excretion. Arapaima gigas is one of the most obligate extant air-breathing fishes, representing a remarkable model system to investigate (1) how the transition from aquatic to aerial respiration affects gill design and (2) the relocation of physiological processes from the gills to the kidney during the evolution of air-breathing. Arapaima gigas undergoes a transition from water- to air-breathing during development, resulting in striking changes in gill morphology. In small fish (10 g), the gills are qualitatively similar in appearance to another closely related water-breathing fish (Osteoglossum bicirrhosum); however, as fish grow (100-1000 g), the inter-lamellar spaces become filled with cells, including mitochondria-rich (MR) cells, leaving only column-shaped filaments. At this stage, there is a high density of MR cells and strong immunolocalization of Na(+)/K(+)-ATPase along the outer cell layer of the gill filament. Despite the greatly reduced overall gill surface area, which is typical of obligate air-breathing fish, the gills may remain an important site for ionoregulation and acid-base regulation. The kidney is greatly enlarged in A. gigas relative to that in O. bicirrhosum and may comprise a significant pathway for nitrogenous waste excretion. Quantification of the physiological role of the gill and the kidney in A. gigas during development and in adults will yield important insights into developmental physiology and the evolution of air-breathing.

Parasitic infections in juveniles of Arapaima gigas (Schinz, 1822) cultivated in the Peruvian Amazon.

Science.gov (United States)

Delgado, Patrick Mathews; Delgado, John Paul Mathews; Orbe, Rosa Ismińo

2013-01-01

The paiche, Arapaima gigas represents a socio-economically important species in the Peruvian Amazon, and actually an intensive production for human consumption has emerged during the last years. Therefore, more studies are required in fish farming development, especially concerning populations of parasites that affect fish production yields. Eighty specimens of paiche collected between September and October of 2011 from semi-intensive fish farm in Loreto State, Peru, were examined for their helminthic parasites. Five species were recorded parasitizing A. gigas: Dawestrema cycloancistrium and Dawestrema cycloancistrioides (Monogenea) on gills, Trichodina sp. (Protozoa) on the skin, Caballerotrema arapaimense (Trematoda) in stomachs and Philometra senticosa (Nematoda) in the swim bladder. Highest prevalence was recorded for D. cycloancistrium (100.0%), D. cycloancistrioides (83.0%) and Trichodina sp. (50.0%) and highest values of mean intensity and mean abundance were recorded for D. cycloancistrium (260) parasites per individual. The results confirm the necessity of constant monitoring of fish, seeking the diagnosis and timely control of infestations with parasites, in order to eradicate the mortality of the host that leads unviable the fish farming intended for human consumption.

Períodos de condicionamento alimentar de juvenis de pirarucu na transição da alimentação de ração úmida para seca

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Rosália Furtado Cutrim Souza

2015-07-01

Full Text Available Resumo: O objetivo deste trabalho foi avaliar o efeito de períodos de condicionamento alimentar sobre o desempenho produtivo e a sobrevivência de juvenis de pirarucu (Arapaima gigas, durante a transição da alimentação com massa de peixe moída para dieta formulada seca. Animais com 15,8±1,2 g foram avaliados com substituições graduais da dieta a cada 2, 3, 4 e 5 dias. Após 12 dias de condicionamento alimentar, as substituições a cada dois e três dias proporcionaram as maiores taxas de crescimento específico. Recomenda-se a substituição da dieta à base de peixe moído por dieta formulada seca a cada dois ou três dias.

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African Journals Online (AJOL)

Items 7351 - 7400 of 11040 ... Vol 10, No 5 (2011), Molecular detection of Edwardsiella tarda with gyrB gene isolated from pirarucu, Arapaima gigas which is exhibited in an indoor private commercial aquarium, Abstract PDF. CH Choresca Jr, DK Gomez, SP Shin, DK Gomez, SP Shin, JH Kim, JE Han, JW Jun, SC Park.

Author Details - AJOL

African Journals Online (AJOL)

Jun, JW. Vol 10, No 5 (2011) - Articles Molecular detection of Edwardsiella tarda with gyrB gene isolated from pirarucu, Arapaima gigas which is exhibited in an indoor private commercial aquarium. Abstract PDF · Vol 11, No 24 (2012) - Articles Effect of storage media and time on fin explants culture in the goldfish, Carassius ...

Comparative studies of bile salts. A new type of bile salt from Arapaima gigas (Cuvier) (family Osteoglossidae).

Science.gov (United States)

Haslewood, G A; Tökés, L

1972-03-01

1. Arapaima gigas bile salts were hydrolysed by alkali or cleaved with dioxan-trichloroacetic acid to give cholic acid, arapaimic acid, arapaimol-A and arapaimol-B. 2. I.r., n.m.r. and mass spectroscopy and [alpha](D) measurements indicated that arapaimic acid and arapaimol-A and -B are respectively 2alpha,3alpha,7alpha,12alpha-tetrahydroxy-5beta,25in-cholestan-26-oic acid, 5beta,25R-cholestane-2beta,3alpha,7alpha,12alpha,26-pentol and 5beta-cholestane-2beta,3alpha,7alpha,12alpha,26,27-hexol. 3. Partial synthesis of 2beta,3alpha,7alpha,12alpha-tetrahydroxy-5alpha- and -5beta-cholan-24-oic acid and their spectral examination fully confirmed these conclusions. 4. A. gigas bile salts show primitive features in that they comprise alcohol sulphates and a C(27) acid; they are also specialized in showing 2beta-hydroxylation.

Implications for osmorespiratory compromise by anatomical remodeling in the gills of Arapaima gigas.

Science.gov (United States)

Ramos, Cleverson Agner; Fernandes, Marisa Narciso; da Costa, Oscar Tadeu Ferreira; Duncan, Wallice Paxiuba

2013-10-01

The gill structure of the Amazonian fish Arapaima gigas, an obligatory air breather, was investigated during its transition from water breathing to the obligatory air breathing modes of respiration. The gill structure of A. gigas larvae is similar to that of most teleost fish; however, the morphology of the gills changes as the fish grow. The main morphological changes in the gill structure of a growing fish include the following: (1) intense cell proliferation in the filaments and lamellae, resulting in increasing epithelial thickness and decreasing interlamellar distance; (2) pillar cell system atrophy, which reduces the blood circulation through the lamellae; (3) the generation of long cytoplasmic processes from the epithelial cells into the intercellular space, resulting in continuous and sinuous paracellular channels between the epithelial cells of the filament and lamella that may be involved in gas, ion, and nutrient transport to epithelial cells; and (4) intense mitochondria-rich cell (MRC) proliferation in the lamellar epithelium. All of these morphological changes in the gills contribute to a low increase of the respiratory surface area for gas exchange and an increase in the water-blood diffusion distance increasing their dependence on air-breathing as fish developed. The increased proliferation of MRCs may contribute to increased ion uptake, which favors the regulation of ion content and pH equilibrium. Copyright © 2013 Wiley Periodicals, Inc.

Dispersal capacity and genetic structure of Arapaima gigas on different geographic scales using microsatellite markers.

Science.gov (United States)

Araripe, Juliana; do Rêgo, Péricles Sena; Queiroz, Helder; Sampaio, Iracilda; Schneider, Horacio

2013-01-01

Despite the ecological and economic importance of the Arapaima gigas (Cuvier 1817), few data about its dispersal capacity are available. The present study was based on the analysis of microsatellite markers in order to estimate the dispersal capacity of the species on fine, meso, and large geographic scales. For this, 561 specimens obtained from stocks separated by distances of up to 25 km (fine scale), 100 km (meso scale), and 1300-2300 km (large scale) were analyzed. The fine scale analysis indicated a marked genetic similarity between lakes, with low genetic differentiation, and significant differences between only a few pairs of sites. Low to moderate genetic differentiation was observed between pairs of sites on a meso scale (100 km), which could be explained by the distances between sites. By contrast, major genetic differentiation was recorded in the large scale analysis, that is, between stocks separated by distances of over 1300 km, with the analysis indicating that differentiation was not related solely to distance. The genetic structuring analysis indicated the presence of two stocks, one represented by the arapaimas of the Mamirauá Reserve, and the other by those of Santarém and Tucuruí. The dispersal of arapaimas over short distances indicates a process of lateral migration within the várzea floodplains, which may be the principal factor determining the considerable homogeneity observed among the várzea lakes. The populations separated by distances of approximately 100 km were characterized by reduced genetic differentiation, which was associated with the geographic distances between sites. Populations separated by distances of over 1300 km were characterized by a high degree of genetic differentiation, which may be related primarily to historical bottlenecks in population size and the sedentary behavior of the species. Evidence was found of asymmetric gene flow, resulting in increasing genetic variability in the population of the Mamirau

Low Genetic Diversity and Structuring of the Arapaima (Osteoglossiformes, Arapaimidae Population of the Araguaia-Tocantins Basin

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Carla A. Vitorino

2017-10-01

Full Text Available The arapaima, Arapaima gigas, is a fish whose populations are threatened by both overfishing and the ongoing destruction of its natural habitats. In the Amazon basin, varying levels of population structure have been found in A. gigas, although no data are available on the genetic diversity or structure of the populations found in the Araguaia-Tocantins basin, which has a topographic profile, hydrological regime, and history of fishing quite distinct from those of the Amazon. In this context, microsatellite markers were used to assess the genetic diversity and connectivity of five wild A. gigas populations in the Araguaia-Tocantins basin. The results of the analysis indicated low levels of genetic diversity in comparison with other A. gigas populations, studied in the Amazon basin. The AMOVA revealed that the Arapaima populations of the Araguaia-Tocantins basin are structured significantly. No correlation was found between pairwise FST values and the geographical distance among populations. The low level of genetic variability and the evidence of restricted gene flow may both be accounted for by overfishing, as well as the other human impacts that these populations have been exposed to over the years. The genetic fragility of these populations demands attention, given that future environmental changes (natural or otherwise may further reduce these indices and eventually endanger these populations. The results of this study emphasize the need to take the genetic differences among the study populations into account when planning management measures and conservation strategies for the arapaima stocks of the Araguaia-Tocantins basin.

Low Genetic Diversity and Structuring of the Arapaima (Osteoglossiformes, Arapaimidae) Population of the Araguaia-Tocantins Basin.

Science.gov (United States)

Vitorino, Carla A; Nogueira, Fabrícia; Souza, Issakar L; Araripe, Juliana; Venere, Paulo C

2017-01-01

The arapaima, Arapaima gigas , is a fish whose populations are threatened by both overfishing and the ongoing destruction of its natural habitats. In the Amazon basin, varying levels of population structure have been found in A. gigas , although no data are available on the genetic diversity or structure of the populations found in the Araguaia-Tocantins basin, which has a topographic profile, hydrological regime, and history of fishing quite distinct from those of the Amazon. In this context, microsatellite markers were used to assess the genetic diversity and connectivity of five wild A. gigas populations in the Araguaia-Tocantins basin. The results of the analysis indicated low levels of genetic diversity in comparison with other A. gigas populations, studied in the Amazon basin. The AMOVA revealed that the Arapaima populations of the Araguaia-Tocantins basin are structured significantly. No correlation was found between pairwise F ST values and the geographical distance among populations. The low level of genetic variability and the evidence of restricted gene flow may both be accounted for by overfishing, as well as the other human impacts that these populations have been exposed to over the years. The genetic fragility of these populations demands attention, given that future environmental changes (natural or otherwise) may further reduce these indices and eventually endanger these populations. The results of this study emphasize the need to take the genetic differences among the study populations into account when planning management measures and conservation strategies for the arapaima stocks of the Araguaia-Tocantins basin.

Dispersal capacity and genetic structure of Arapaima gigas on different geographic scales using microsatellite markers.

Directory of Open Access Journals (Sweden)

Juliana Araripe

Full Text Available Despite the ecological and economic importance of the Arapaima gigas (Cuvier 1817, few data about its dispersal capacity are available. The present study was based on the analysis of microsatellite markers in order to estimate the dispersal capacity of the species on fine, meso, and large geographic scales. For this, 561 specimens obtained from stocks separated by distances of up to 25 km (fine scale, 100 km (meso scale, and 1300-2300 km (large scale were analyzed. The fine scale analysis indicated a marked genetic similarity between lakes, with low genetic differentiation, and significant differences between only a few pairs of sites. Low to moderate genetic differentiation was observed between pairs of sites on a meso scale (100 km, which could be explained by the distances between sites. By contrast, major genetic differentiation was recorded in the large scale analysis, that is, between stocks separated by distances of over 1300 km, with the analysis indicating that differentiation was not related solely to distance. The genetic structuring analysis indicated the presence of two stocks, one represented by the arapaimas of the Mamirauá Reserve, and the other by those of Santarém and Tucuruí. The dispersal of arapaimas over short distances indicates a process of lateral migration within the várzea floodplains, which may be the principal factor determining the considerable homogeneity observed among the várzea lakes. The populations separated by distances of approximately 100 km were characterized by reduced genetic differentiation, which was associated with the geographic distances between sites. Populations separated by distances of over 1300 km were characterized by a high degree of genetic differentiation, which may be related primarily to historical bottlenecks in population size and the sedentary behavior of the species. Evidence was found of asymmetric gene flow, resulting in increasing genetic variability in the population of the

A simple and low-cost recirculating aquaculture system for the production of arapaima juveniles

OpenAIRE

Burton, Andrew Mark; Moncayo Calderero, Edwin; Burgos Moran, Ricardo Ernesto; Anastacio Sánchez, Rogelio Lumbes; Avendaño Villamar, Ulises Tiberio; Ortega Torres, Nelson Guillermo

2016-01-01

A simple and low-cost recirculating system (RAS) for production of arapaima  (Arapaima gigas) juveniles is described. Twenty arapaima fry (mean 13.0 cm, 12.0 g) were housed in three production tanks and fed a high HUFA diet resulting in 90% of fry successfully progressing to juveniles (mean 17.4 cm long; 40.2 g). The fish were then reared for a further 72 days fed on commercial extruded pellet feed achieving a mean length of 42.6 cm and 656.6 g. The simple and low-cost RAS holds good potentia...

A mística do Pirarucu: pesca, ethos e paisagem em comunidades rurais do baixo Amazonas

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Rui Sérgio S. Murrieta

2001-12-01

analyze the practice and meanings that permeate pirarucu fishing in rural communities of the Lower Amazon, State of Pará, Brazil. The pirarucu (Arapaima gigas is the largest scale fish of Amazonia and is also an important market product, due mainly to its privileged role in the regional cuisine. Pirarucu fishing is one of the earliest human activities of the Lower Amazon, dating back to pre-colonial times. For many fishermen who live on Ituqui Island, catching a pirarucu represents more than a economic security, but also a set of meanings and experiences ontologically structured in their everyday life and identity. Social conflict and personal disputes are intensified or lightened, and old affections and social ties are reinforced through the practices and encounters experienced during a fishing trip to one of the nearby lakes. Beyond the practice per se, these fishing trips trigger mnemonic and affective references to the landscape and the momentum of capture, and the sense of place, resulting in a processual unity intimately connected to personal and social meanings that cannot be compartmentalized. In the midst of so many motivations behind pirarucu fishing, aggressive disputes and irrational captures may take place. Fishing spots are kept secret and territorial bonds are protected. Rights to this resource and, by extension, over the meanings and emotions to which it is connected becomes, to a certain extend, a luxury aggressively protected by some. The decrease of the pirarucu stocks, new fishing technologies and the great demand and "mystique" still surrounding its capture have posed a dilemma to the fishermen: the survival of the pirarucu "fishing" collides with what the environmentalists have called the rationality of conservation.

Goezia spinulosa (Nematoda: Raphidascarididae), a pathogenic parasite of the arapaima Arapaima gigas (Osteichthyes)

Czech Academy of Sciences Publication Activity Database

Santos, C. P.; Moravec, František

2009-01-01

Roč. 56, č. 1 (2009), s. 55-63 ISSN 0015-5683 R&D Projects: GA MŠk LC522; GA ČR(CZ) GA524/06/0170 Institutional research plan: CEZ:AV0Z60220518 Keywords : Goezia * Arapaima * Brazil Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 1.266, year: 2009

Capillostrongyloides arapaimae sp. n. (Nematoda: Capillariidae), a new intestinal parasite of the arapaima Arapaima gigas from the Brazilian Amazon

Czech Academy of Sciences Publication Activity Database

Santos, C. P.; Moravec, František; Venturieri, R.

2008-01-01

Roč. 103, č. 4 (2008), s. 392-395 ISSN 1678-8060 R&D Projects: GA ČR(CZ) GA524/06/0170 Institutional research plan: CEZ:AV0Z60220518 Keywords : Capillostrongyloides * Arapaima * Brazil Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine

Avaliação sensorial, físico-química e microbiológica do pirarucu (Arapaima gigas, Schinz 1822 durante estocagem em gelo

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Pedro Roberto de Oliveira

2014-03-01

Full Text Available O pirarucu é a espécie de peixe de maior valor econômico na Amazônia brasileira, e esse fato tem motivado crescente interesse dos piscicultores na sua exploração comercial. A finalidade do presente estudo foi medir as alterações sensoriais, físico-químicas e microbiológicas que ocorreram em exemplares de pirarucu estocados em gelo (2±1 ºC. Amostras foram analisadas semanalmente, durante 36 dias, por meio de determinações do pH, Nitrogênio das bases voláteis totais (N-BVT, avaliação sensorial pelo Método de Índice de Qualidade (MIQ, textura instrumental e contagens microbiológicas. Foram também determinados a composição centesimal, o índice de rigor mortis e o rendimento da espécie. Os resultados mostraram que o tempo de vida útil para consumo, de acordo com a avaliação sensorial, foi de 27 ± 0,5 dias em gelo. As contagens de bactérias mesófilas e psicrófilas apresentaram valores máximos entre 10(6 a 10(7(UFC/g e os índices de pH e N-BVT não apresentaram valores elevados durante todo o período de estocagem em gelo.

Dawestrema cycloancistrium (Monogenea) from the head pores of arapaimas.

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Portes Santos, Cláudia; da Silva, Maralina Torres; Moravec, Franti Ek

2017-07-24

Arapaima gigas is one of the main cultured fish species in South America, and monogenean parasites of this species cause large economic losses to fish farmers. During surveys of the parasites of cultured arapaimas from Mexiana Island in the Amazon River Delta, Rio Branco, in northwestern Brazilian Amazonia, and Yurimaguas, Peru, the monogenean Dawestrema cycloancistrium was found in the gills of A. gigas as well as in previously unreported sites, i.e. the head pores and chambers. The aim of this study was to investigate the transmission route of this parasite and its geographical distribution as well as to describe its morphology as observed by light and confocal imaging. Phalloidin labeling confirmed the presence of 2 prostatic reservoirs and showed muscular branches of fibers supporting haptoral sclerites. In arapaimas, the head connects to the gill chambers via 2 perforated scales located at the dorsolateral sides of the distal part of the head. The scales connect to thin channels and chambers situated in the proximal part of the head. These chambers are filled with cephalic mucus, which flows out to the environment through terminal pores. Adults and egg masses of monogeneans were found on the gills and inside the head pores and cavities of fish along with cephalic mucus. This indicates a specialized method of parasite transmission from adult fish to fingerlings during parental care (holding offspring in the mouth) or via head secretions, providing evidence of a new adapted mechanism of dispersion.

Mechanical properties and the laminate structure of Arapaima gigas scales.

Science.gov (United States)

Lin, Y S; Wei, C T; Olevsky, E A; Meyers, Marc A

2011-10-01

The Arapaima gigas scales play an important role in protecting this large Amazon basin fish against predators such as the piranha. They have a laminate composite structure composed of an external mineralized layer and internal lamellae with thickness of 50-60 μm each and composed of collagen fibers with ~1 μm diameter. The alignment of collagen fibers is consistent in each individual layer but varies from layer to layer, forming a non-orthogonal plywood structure, known as Bouligand stacking. X-ray diffraction revealed that the external surface of the scale contains calcium-deficient hydroxyapatite. EDS results confirm that the percentage of calcium is higher in the external layer. The micro-indentation hardness of the external layer (550 MPa) is considerably higher than that of the internal layer (200 MPa), consistent with its higher degree of mineralization. Tensile testing of the scales carried out in the dry and wet conditions shows that the strength and stiffness are hydration dependent. As is the case of most biological materials, the elastic modulus of the scale is strain-rate dependent. The strain-rate dependence of the elastic modulus, as expressed by the Ramberg-Osgood equation, is equal to 0.26, approximately ten times higher than that of bone. This is attributed to the higher fraction of collagen in the scales and to the high degree of hydration (30% H(2)O). Deproteinization of the scale reveals the structure of the mineral component consisting of an interconnected network of platelets with a thickness of ~50 nm and diameter of ~500 nm. Copyright © 2011 Elsevier Ltd. All rights reserved.

Molecular cloning and characterization of pirarucu (Arapaima gigas follicle-stimulating hormone and luteinizing hormone β-subunit cDNAs.

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Thais Sevilhano

Full Text Available The common gonadotrophic hormone α-subunit (GTHα has been previously isolated by our research group from A. gigas pituitaries; in the present work the cDNA sequences encoding FSHβ and LHβ subunits have also been isolated from the same species of fish. The FSH β-subunit consists of 126 amino acids with a putative 18 amino acid signal peptide and a 108 amino acid mature peptide, while the LH β-subunit consists of 141 amino acids with a putative 24 amino acid amino acid signal peptide and a 117 amino acid mature peptide. The highest identity, based on the amino acid sequences, was found with the order of Anguilliformes (61% for FSHβ and of Cypriniformes (76% for LHβ, followed by Siluriformes, 53% for FSHβ and 75% for LHβ. Interestingly, the identity with the corresponding human amino acid sequences was still remarkable: 45.1% for FSHβ and 51.4% for LHβ. Three dimensional models of ag-FSH and ag-LH, generated by using the crystal structures of h-FSH and h-LH as the respective templates and carried out via comparative modeling and molecular dynamics simulations, suggested the presence of the so-called "seat-belt", favored by a disulfide bond formed between the 3rd and 12th cysteine in both β-subunits. The sequences found will be used for the biotechnological synthesis of A. gigas gonadotrophic hormones (ag-FSH and ag-LH. In a first approach, to ascertain that the cloned transcripts allow the expression of the heterodimeric hormones, ag-FSH has been synthesized in human embryonic kidney 293 (HEK293 cells, preliminarily purified and characterized.

Molecular cloning and characterization of pirarucu (Arapaima gigas) follicle-stimulating hormone and luteinizing hormone β-subunit cDNAs.

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Sevilhano, Thais; Carvalho, Roberto Feitosa de; Oliveira, Nélio Alessandro de Jesus; Oliveira, João Ezequiel; Maltarollo, Vinicius Gonçalves; Trossini, Gustavo; Garcez, Riviane; Bartolini, Paolo

2017-01-01

The common gonadotrophic hormone α-subunit (GTHα) has been previously isolated by our research group from A. gigas pituitaries; in the present work the cDNA sequences encoding FSHβ and LHβ subunits have also been isolated from the same species of fish. The FSH β-subunit consists of 126 amino acids with a putative 18 amino acid signal peptide and a 108 amino acid mature peptide, while the LH β-subunit consists of 141 amino acids with a putative 24 amino acid amino acid signal peptide and a 117 amino acid mature peptide. The highest identity, based on the amino acid sequences, was found with the order of Anguilliformes (61%) for FSHβ and of Cypriniformes (76%) for LHβ, followed by Siluriformes, 53% for FSHβ and 75% for LHβ. Interestingly, the identity with the corresponding human amino acid sequences was still remarkable: 45.1% for FSHβ and 51.4% for LHβ. Three dimensional models of ag-FSH and ag-LH, generated by using the crystal structures of h-FSH and h-LH as the respective templates and carried out via comparative modeling and molecular dynamics simulations, suggested the presence of the so-called "seat-belt", favored by a disulfide bond formed between the 3rd and 12th cysteine in both β-subunits. The sequences found will be used for the biotechnological synthesis of A. gigas gonadotrophic hormones (ag-FSH and ag-LH). In a first approach, to ascertain that the cloned transcripts allow the expression of the heterodimeric hormones, ag-FSH has been synthesized in human embryonic kidney 293 (HEK293) cells, preliminarily purified and characterized.

Production of arapaima protein hydrolysate using Aspergillus flavo-furcatis protease and pancreatin

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Flávia de Carvalho Paiva

2015-03-01

Full Text Available The processing of arapaima (Arapaima gigas generates a lot of residues that can be used for the development of new products of industrial interest. This study aimed at evaluating the production of protein hydrolysates from arapaima residues using Aspergillus flavo-furcatis protease and commercial pancreatin, as well as characterizing their nutritional and microbiological qualities. The raw material used was meat mechanically separated from arapaima carcasses (MMSA. Two products were developed: a protein hydrolysate of arapaima using a commercial enzyme (PHACE and another one using microbial enzyme (PHAME. The MMSA and the hydrolysates were analyzed for chemical composition, microbiological quality, degree of hydrolysis, digestibility and amino acid profile. The results showed that the PHACE protein content was 73.47 %. This value was significantly higher, when compared to the PHAME (58.03 %. However, both products showed high digestibility values, absence of microbial contaminants and reduced lipid content. Among the enzymes used, pancreatin was the most efficient one in the preparation of the final product, which showed essential amino acids content higher than the requirements for human adults. The hydrolysate developed using A. flavo-furcatis enzymes presented essential amino acids score lower than 1.0, being tryptophan the most limiting one.

Morphometric partitioning of the respiratory surface area and diffusion capacity of the gills and swim bladder in juvenile Amazonian air-breathing fish, Arapaima gigas.

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Fernandes, Marisa Narciso; da Cruz, André Luis; da Costa, Oscar Tadeu Ferreira; Perry, Steven Franklin

2012-09-01

The gills and the respiratory swim bladders of juvenile specimens (mean body mass 100g) of the basal teleost Arapaima gigas (Cuvier 1829) were evaluated using stereological methods in vertical sections. The surface areas, harmonic mean barrier thicknesses and morphometric diffusing capacities for oxygen and carbon dioxide were estimated. The average respiratory surface area of the swim bladder (2173 cm² kg⁻¹) exceeded that of the gills (780 cm² kg⁻¹) by a factor of 2.79. Due to the extremely thin air-blood barrier in the swim bladder (harmonic mean 0.22 μm) and the much thicker water-blood barrier of the gills (9.61 μm), the morphometric diffusing capacity for oxygen and carbon dioxide was 88 times greater in the swim bladder than in the gills. These data clearly indicate the importance of the swim bladder, even in juvenile A. gigas that still engage in aquatic respiration. Because of the much greater diffusion constant of CO₂ than O₂ in water, the gills also remain important for CO₂ release. Copyright © 2012 Elsevier Ltd. All rights reserved.

MORTALITY OF YOUTH Arapaima gigas (PISCES: ARAPAIMIDAE FROM A FISH FARMING IN THE NORTH OF BRAZIL, CAUSED BY Hysterothylacium sp. AND Goezia spinulosa (NEMATODA: ANISAKIDAE

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Patrizia Batista de Azevedo

2017-03-01

Full Text Available In youth A. gigas the risk of parasitic infections is very high, due to their feeding habit to prey on small invertebrates, which act as intermediate hosts of different endoparasite species, which can cause serious problems and high mortalities in fish farms. Thus, the aim of the present study was to identify the species that parasitize youth A. gigas raised in captivity in the Manacapuru municipality, Amazonas State and to evaluate their influence on the mortality of these fish. There were examined 66 youth A. gigas and non-parasite was recorded in the host gills. The intestine and stomach of the fish were parasitized by Hysterothylacium sp. larvae (L3 and Goezia spinulosa larvae (L4. The parasitic indexes were high for the two species, being recorded the highest rates of infection by Hysterothylacium sp. There was observed a weak positive correlation between the host standard length and the abundance of Hysterothylacium sp. The lesions observed in the stomach and intestine of the fish, together with the high parasite index values recorded for Hysterothylacium sp. and Goezia spinulosa, leads to the suspicion that the death of the fish was due to complications and damages caused by the presence of these parasites. Keywords: Amazonia; arapaima; death; nematodes.

Morphofunctional description of mucous cells in the gills of the Arapaimidae Arapaima gigas (Cuvier) during its development.

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Ramos, C A; da Costa, O T F; Duncan, W L P; Fernandes, M N

2018-05-07

The gill structure of the Amazonian fish Arapaima gigas (Cuvier 1829) shows ontogenetic changes during development, particularly due the transition from the aquatic to the obligatory air breathing mode of respiration. However, three main cell types can be found in the gills: mitochondrial rich cells, pavement cells and mucous cells (MCs). The MCs are involved in the secretory pathway. The functions of the secreted molecules include mechanical protection of epithelia, protection against parasites and bacterial infection, and role on ion regulation. In this study, we analysed mucous cell location and mucous cell type, based on pH, during the development of A. gigas. Using samples obtained from the environment, gills were collected and fixed in buffered solution. Histological techniques for the identification of MCs were performed Alcian Blue (AB) and periodic acid-Schiff (PAS). The results showed the presence of PAS+ and AB+ cells in the whole filament in all examined fish. In animals less than 50 g, few MCs were present, and no differences were observed in AB+ and PAS+ cells. In animals weighing close to 500 g, more PAS+ cells than AB+ cells were observed, and in animals that weighed more than 1,000 g, more AB+ cells than PAS+ cells were observed. These observations may be a result of the ontogenetic changes in the gill epithelia, which can change the osmorespiratory compromise in ion regulation functions as well the glycosaminoglycans secreted by PAS cells, which in large animals can play a role in the protection against parasites and bacterial infection. © 2018 Blackwell Verlag GmbH.

Aplicación de la Espectrometría de Masas Maldi tof/tof a la Endocrinología, Inmunología y Patología del paiche Arapaima gigas

OpenAIRE

Cueva Távara, Mario David

2016-01-01

RESUMEN El pez amazónico gigante “paiche” Arapaima gigas es una especie prometedora para la piscicultura tropical debido a sus características anatómicas, sin embargo, su completa domesticación es problemática debido a la falta de información biológica. Los progresos recientes en el campo de la biotecnología molecular, llamados “omicas”, están revolucionando la ictiología básica y aplicada; en particular la proteómica por espectrometría doble masa MALDI TOF/TOF, que permite la detección...

Tissue-dwelling philometrid nematodes of the fish Arapaima gigas in Brazil

Czech Academy of Sciences Publication Activity Database

Santos, C. P.; Moravec, František

2009-01-01

Roč. 83, č. 2 (2009), s. 295-301 ISSN 0022-149X R&D Projects: GA ČR(CZ) GA524/06/0170; GA MŠk LC522 Institutional research plan: CEZ:AV0Z60220518 Keywords : Philometrid nematodes * Arapaima * Brazil Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 0.863, year: 2009

Comparative proteome and peptidome analysis of the cephalic fluid secreted by Arapaima gigas (Teleostei: Osteoglossidae) during and outside parental care.

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Torati, Lucas S; Migaud, Hervé; Doherty, Mary K; Siwy, Justyna; Mullen, Willian; Mesquita, Pedro E C; Albalat, Amaya

2017-01-01

Parental investment in Arapaima gigas includes nest building and guarding, followed by a care provision when a cephalic fluid is released from the parents' head to the offspring. This fluid has presumably important functions for the offspring but so far its composition has not been characterised. In this study the proteome and peptidome of the cephalic secretion was studied in parental and non-parental fish using capillary electrophoresis coupled to mass spectrometry (CE-MS) and GeLC-MS/MS analyses. Multiple comparisons revealed 28 peptides were significantly different between males and parental males (PC-males), 126 between females and parental females (PC-females), 51 between males and females and 9 between PC-males and PC-females. Identification revealed peptides were produced in the inner ear (pcdh15b), eyes (tetraspanin and ppp2r3a), central nervous system (otud4, ribeye a, tjp1b and syn1) among others. A total of 422 proteins were also identified and gene ontology analysis revealed 28 secreted extracellular proteins. From these, 2 hormones (prolactin and stanniocalcin) and 12 proteins associated to immunological processes (serotransferrin, α-1-antitrypsin homolog, apolipoprotein A-I, and others) were identified. This study provides novel biochemical data on the lateral line fluid which will enable future hypotheses-driven experiments to better understand the physiological roles of the lateral line in chemical communication.

Comparative proteome and peptidome analysis of the cephalic fluid secreted by Arapaima gigas (Teleostei: Osteoglossidae during and outside parental care.

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Lucas S Torati

Full Text Available Parental investment in Arapaima gigas includes nest building and guarding, followed by a care provision when a cephalic fluid is released from the parents' head to the offspring. This fluid has presumably important functions for the offspring but so far its composition has not been characterised. In this study the proteome and peptidome of the cephalic secretion was studied in parental and non-parental fish using capillary electrophoresis coupled to mass spectrometry (CE-MS and GeLC-MS/MS analyses. Multiple comparisons revealed 28 peptides were significantly different between males and parental males (PC-males, 126 between females and parental females (PC-females, 51 between males and females and 9 between PC-males and PC-females. Identification revealed peptides were produced in the inner ear (pcdh15b, eyes (tetraspanin and ppp2r3a, central nervous system (otud4, ribeye a, tjp1b and syn1 among others. A total of 422 proteins were also identified and gene ontology analysis revealed 28 secreted extracellular proteins. From these, 2 hormones (prolactin and stanniocalcin and 12 proteins associated to immunological processes (serotransferrin, α-1-antitrypsin homolog, apolipoprotein A-I, and others were identified. This study provides novel biochemical data on the lateral line fluid which will enable future hypotheses-driven experiments to better understand the physiological roles of the lateral line in chemical communication.

Novel, major 2α- and 2β-hydroxy bile alcohols and bile acids in the bile of Arapaima gigas, a large South American river fish.

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Sato née Okihara, Rika; Saito, Tetsuya; Ogata, Hiroaki; Nakane, Naoya; Namegawa, Kazunari; Sekiguchi, Shoutaro; Omura, Kaoru; Kurabuchi, Satoshi; Mitamura, Kuniko; Ikegawa, Shigeo; Raines, Jan; Hagey, Lee R; Hofmann, Alan F; Iida, Takashi

2016-03-01

Bile alcohols and bile acids from gallbladder bile of the Arapaima gigas, a large South American freshwater fish, were isolated by reversed-phase high-performance liquid chromatography. The structures of the major isolated compounds were determined by electrospray-tandem mass spectrometry and nuclear magnetic resonance using (1)H- and (13)C-NMR spectra. The novel bile salts identified were six variants of 2-hydroxy bile acids and bile alcohols in the 5α- and 5β-series, with 29% of all compounds having hydroxylation at C-2. Three C27 bile alcohols were present (as ester sulfates): (24ξ,25ξ)-5α-cholestan-2α,3α,7α,12α,24,26-hexol; (25ξ)-5β-cholestan-2β,3α,7α,12α,26,27-hexol, and (25ξ)-5α-cholestan-2α,3α,7α,12α,26,27-hexol. A single C27 bile acid was identified: (25ξ)-2α,3α,7α,12α-tetrahydroxy-5α-cholestan-26-oic acid, present as its taurine conjugate. Two novel C24 bile acids were identified: the 2α-hydroxy derivative of allochenodeoxycholic acid and the 2β-hydroxy derivative of cholic acid, both occurring as taurine conjugates. These studies extend previous work in establishing the natural occurrence of novel 2α- and 2β-hydroxy-C24 and C27 bile acids as well as C27 bile alcohols in both the normal (5β) as well as the (5α) "allo" A/B-ring juncture. The bile salt profile of A. gigas appears to be unique among vertebrates. Copyright © 2016. Published by Elsevier Inc.

Integrative taxonomy of Goezia spinulosa (Nematoda: Raphidascarididae) from arapaimas in the northwestern Brazil.

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Silva, Maralina Torres da; Oliveira Cavalcante, Pedro Hercílio de; Camargo, Ana Carolina Alves de; Chagas Moutinho, Vanessa Aparecida das; Santos, Everton Gustavo Nunes Dos; Santos, Cláudia Portes

2017-08-15

Arapaima gigas, a fish with a high market value, has been farmed in different localities within Brazil. Among its parasites, adults of Goezia spinulosa are reported to cause ulcers in the stomach and to result in the death of farmed fingerlings. Due to the veterinary importance of this nematode in cultured arapaimas, an integrative taxonomic study is proposed, combining morphological, ultrastructural and genetic profiles of this parasite. The fish were obtained from semi-intensive fish farming in Acre State, Brazil. The fish measured 7-42cm in total length and the intensity of infection was 1-60 parasites per fish. The site of infection was mainly the stomach. Morphological and ultrastructural analyses of G. spinulosa showed the importance of its spiny body in firmly attaching the worm to the gastric mucosa, resulting in lesions, ulcers and deep gastric perforations of the stomach wall. New sequences for partial 18S rDNA, ITS1, 5.8S and ITS2 rDNA, partial 28S rDNA, cox1 mtDNA and for cox2 mtDNA are presented. Phylogenetic reconstructions based on the partial 18S and 28S rDNA shows species of Goezia occur in a clade well separated from other genera in both analyses. Both the partial 18S and 28S rDNA genes represented good genetic markers for distinguishing genera of the Raphidascarididae, with exception of Hysterothylacium. This integrated taxonomic study produced a robust profile for G. spinulosa that will aid the diagnosis of both adults and larval stages from arapaimas and possible intermediate hosts. Copyright © 2017 Elsevier B.V. All rights reserved.

VALOR AGREGADO DE LAS ESPECIES Brycon erythropterum (SÁBALO, Colossoma macropomum (GAMITANA, Arapaima gigas (PAICHE y Agouti paca (MAJAS

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Doylith Vásquez Jurafo

2012-12-01

Full Text Available El presente trabajo tiene como objetivo la obtención de productos mínimamente procesados (PMP de Brycon erythropterum (SÁBALO, Colossoma macropomum (GAMITANA, Arapaima gigas (PAICHE, y Agouti paca (MAJAS congelado y empacado al vacio. Para las especies piscícolas, se ha aplicado un diseño factorial de 32 con dos factores de estudios: concentración de NaCl en la solución osmótica con tres niveles (15, 20 y 25 % y temperatura de proceso con tres niveles de estudio (5, 10 y 15 °C. Para el Agouti paca (majas se aplicó un diseño factorial completamente aleatorizado con tres factores de estudio: tiempo de proceso (30, 60 y 90 minutos, método de ahumado (ahumado líquido y ahumado en caliente y tipo de corte del músculo (partes y filetes. Para trabajar se ha diseñado y montado un deshidratador Osmótico teniendo en cuenta, diámetro de tubería, deshidratador propiamente dicho con doble chaqueta, capacidad del deshidratador en función del volumen de la Salmuera.  Todos los productos se obtuvieron en procesos con 10 °C y tiempos entre 30 min y 90 min. El tiempo de vida en almacenamiento en las evaluaciones de aroma y color en majas tienen una vida útil de 4 meses de almacenados a -18 °C. Los análisis microbiológicos realizados a los PMP no pasan los límites de la NTS Nº 071 MINSA/DIGESA V01.

VALOR AGREGADO DE LAS ESPECIES Brycon erythropterum (SÁBALO, Colossoma macropomum (GAMITANA, Arapaima gigas (PAICHE y Agouti paca (MAJAS

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Doylith Vásquez Jurafo

2012-12-01

Full Text Available El presente trabajo tiene como objetivo  la obtención de  productos mínimamente procesados (PMP de Brycon erythropterum (SÁBALO, Colossoma macropomum (GAMITANA, Arapaima gigas (PAICHE, y Agouti paca (MAJAS congelado y empacado al vacio. Para las especies piscícolas, se ha aplicado un diseño factorial de 32 con dos factores de estudios: concentración de NaCl en la solución osmótica con tres niveles (15, 20 y 25 % y temperatura de proceso  con tres niveles de estudio (5, 10 y 15 °C. Para el Agouti paca (majas se aplico un diseño factorial completamente aleatorizado con tres factores de estudio: tiempo de proceso (30, 60 y 90 minutos, método de ahumado (ahumado líquido y ahumado en caliente y tipo de corte del músculo (partes y filetes. Para trabajar se ha diseñado y montado un deshidratador Osmótico teniendo en cuenta, diámetro de tubería, deshidratador propiamente dicho con doble chaqueta, capacidad del deshidratador en función del volumen de la Salmuera.  Todos los productos se obtuvieron  en procesos con 10 °C y tiempos entre 30 min y  90 min. El tiempo de vida en almacenamiento en las evaluaciones de aroma y color en majas tienen una vida útil de 4 meses de almacenados a -18 °C. Los análisis microbiológicos realizados a los PMP no pasan los límites de la NTS Nº 071 MINSA/DIGESA V01.

Impact of ontogenetic changes in branchial morphology on gill function in Arapaima gigas.

Science.gov (United States)

Gonzalez, R J; Brauner, C J; Wang, Y X; Richards, J G; Patrick, M L; Xi, W; Matey, V; Val, A L

2010-01-01

Soon after hatching, the osteoglossid fish Arapaima gigas undergoes a rapid transition from a water breather to an obligate air breather. This is followed by a gradual disappearance of gill lamellae, which leaves smooth filaments with a reduced branchial diffusion capacity due to loss of surface area, and a fourfold increase in diffusion distance. This study evaluated the effects these changes have on gill function by examining two size classes of fish that differ in gill morphology. In comparison to smaller fish (approximately 67.5 g), which still have lamellae, larger fish (approximately 724.2 g) without lamellae took up a slightly greater percentage of O2 across the gills (30.1% vs. 23.9%), which indicates that the morphological changes do not place limitations on O2 uptake in larger fish. Both size groups excreted similar percentages of CO2 across the gills (85%-90%). However, larger fish had higher blood PCO2 (26.51.9 vs. 16.51.5 mmHg) and HCO3(-) (40.2 +/- 2.9 vs. 33.6 +/- 4.5 mmol L(-1)) concentrations and lower blood pH (7.58 +/- 0.01 vs. 7.70 +/- 0.04) than did smaller fish, despite having lower mass-specific metabolisms, suggesting a possible diffusion limitation for CO2 excretion in larger fish. With regard to ion regulation, rates of diffusive Na+ loss were about 3.5 times higher in larger fish than they were in smaller fish, despite the lowered branchial diffusion capacity, and rates of Na+ uptake were higher by about the same amount despite 40% lower activity of branchial Na+/K+-ATPase. Kinetic analysis of Na uptake revealed an extremely low-affinity (K(m) = 587.9 +/- 169.5 micromol L(-1)), low-capacity (J(max) = 265.7 +/- 56.8 nmol g(-1) h(-1)) transport system. These data may reflect a general reduction in the role of the gills in ion balance. Renal Na+/K+-ATPase activity was 5-10 times higher than Na+/K+-ATPase activity in the gills, and urine: plasma ratios for Na+ and Cl(-) were very low (0.001-0.005) relative to that of other fish, which

Traditional Knowledge of the Fishermen of the Lower Juruá River: Understanding the Reproductive Patterns of the Region’s Fish Species

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Tony Marcos Porto Braga

2017-04-01

Full Text Available The present study describes the knowledge system of riverside fishing communities in the lower Juruá river Extractivist Reserve in the Brazilian state of Amazonas, focusing on the understanding of the reproductive patterns of the region’s fish species. The data were collected in 2008 and 2009 during the low water period, when the most experienced fishermen gather to count and harvest the pirarucu (Arapaima gigas. Data were collected using semi-structured interviews of the fishermen considered to be local “authorities”. The data were analyzed by allocating the content of the responses to the interviews to specific categories. The data were also analyzed through an emic/etic approach, based on the compilation of cognitive tables, which compare the traditional knowledge with the content of the pertinent scientific literature. The fishermen presented an extensive and detailed knowledge of the reproductive behavior of the region’s fish species, relating observed patterns to the flood pulse of the Juruá River.

Comparative effect of pesticides on brain acetylcholinesterase in tropical fish.

Science.gov (United States)

Assis, Caio Rodrigo Dias; Linhares, Amanda Guedes; Oliveira, Vagne Melo; França, Renata Cristina Penha; Carvalho, Elba Veronica Matoso Maciel; Bezerra, Ranilson Souza; de Carvalho, Luiz Bezerra

2012-12-15

Monitoring of pesticides based on acetylcholinesterase (AChE; EC 3.1.1.7) inhibition in vitro avoids interference of detoxification defenses and bioactivation of some of those compounds in non-target tissues. Moreover, environmental temperature, age and stress are able to affect specific enzyme activities when performing in vivo studies. Few comparative studies have investigated the inter-specific differences in AChE activity in fish. Screening studies allow choosing the suitable species as source of AChE to detect pesticides in a given situation. Brain AChE from the tropical fish: pirarucu (Arapaima gigas), cobia (Rachycentron canadum) and Nile tilapia (Oreochromis niloticus) were characterized and their activities were assayed in the presence of pesticides (the organophosphates: dichlorvos, diazinon, chlorpyrifos, temephos, tetraethyl pyrophosphate- TEPP and the carbamates: carbaryl and carbofuran). Inhibition parameters (IC₅₀ and Ki) for each species were found and compared with commercial AChE from electric eel (Electrophorus electricus). Optimal pH and temperature were found to be 8.0 and 35-45 °C, respectively. A. gigas AChE retained 81% of the activity after incubation at 50 °C for 30 min. The electric eel enzyme was more sensitive to the compounds (mainly carbofuran, IC₅₀ of 5 nM), excepting the one from A. gigas (IC₅₀ of 9 nM) under TEPP inhibition. These results show comparable sensitivity between purified and non-purified enzymes suggesting them as biomarkers for organophosphorus and carbamate detection in routine environmental and food monitoring programs for pesticides. Copyright © 2012 Elsevier B.V. All rights reserved.

The origin and evolution of the surfactant system in fish: insights into the evolution of lungs and swim bladders.

Science.gov (United States)

Daniels, Christopher B; Orgeig, Sandra; Sullivan, Lucy C; Ling, Nicholas; Bennett, Michael B; Schürch, Samuel; Val, Adalberto Luis; Brauner, Colin J

2004-01-01

Several times throughout their radiation fish have evolved either lungs or swim bladders as gas-holding structures. Lungs and swim bladders have different ontogenetic origins and can be used either for buoyancy or as an accessory respiratory organ. Therefore, the presence of air-filled bladders or lungs in different groups of fishes is an example of convergent evolution. We propose that air breathing could not occur without the presence of a surfactant system and suggest that this system may have originated in epithelial cells lining the pharynx. Here we present new data on the surfactant system in swim bladders of three teleost fish (the air-breathing pirarucu Arapaima gigas and tarpon Megalops cyprinoides and the non-air-breathing New Zealand snapper Pagrus auratus). We determined the presence of surfactant using biochemical, biophysical, and morphological analyses and determined homology using immunohistochemical analysis of the surfactant proteins (SPs). We relate the presence and structure of the surfactant system to those previously described in the swim bladders of another teleost, the goldfish, and those of the air-breathing organs of the other members of the Osteichthyes, the more primitive air-breathing Actinopterygii and the Sarcopterygii. Snapper and tarpon swim bladders are lined with squamous and cuboidal epithelial cells, respectively, containing membrane-bound lamellar bodies. Phosphatidylcholine dominates the phospholipid (PL) profile of lavage material from all fish analyzed to date. The presence of the characteristic surfactant lipids in pirarucu and tarpon, lamellar bodies in tarpon and snapper, SP-B in tarpon and pirarucu lavage, and SPs (A, B, and D) in swim bladder tissue of the tarpon provide strong evidence that the surfactant system of teleosts is homologous with that of other fish and of tetrapods. This study is the first demonstration of the presence of SP-D in the air-breathing organs of nonmammalian species and SP-B in actinopterygian

Mineral and water content of A. gigas scales determine local micromechanical properties and energy dissipation mechanisms

Science.gov (United States)

Troncoso, Omar P.; Gigos, Florian; Torres, Fernando G.

2017-11-01

Arapaima gigas scales are natural laminated composite materials made of individual layers with different degrees of mineralization, accompanied of varying mechanical properties. This natural design provides scales with hardness and flexibility, and can serve as a source of inspiration for the development of new layered composites with a hard surface and flexible base. In this paper, we have carried out cyclic micro-indentation tests on both; the internal and the highly mineralized external surface of air dried and wet scales, in order to assess the variation of their local micromechanical properties with regard to the mineral and water content. The load-penetration (P-h) curves showed that creep takes place throughout the application of a constant force during the micro-indentation tests, confirming the time dependent response of A. gigas scales. A model that accounted for the elastic, plastic and viscous responses of the samples was used to fit the experimental results. The penetration depth during loading and creep, as well as the energy dissipated are dependent on the water content. The used model suggests that the viscous response of the internal layer increases with the water content.

GigaDB: announcing the GigaScience database

Directory of Open Access Journals (Sweden)

Sneddon Tam P

2012-07-01

Full Text Available Abstract With the launch of GigaScience journal, here we provide insight into the accompanying database GigaDB, which allows the integration of manuscript publication with supporting data and tools. Reinforcing and upholding GigaScience’s goals to promote open-data and reproducibility of research, GigaDB also aims to provide a home, when a suitable public repository does not exist, for the supporting data or tools featured in the journal and beyond.

Digestibility and physico-chemical characteristics of acid silage meal made of pirarucu waste in diets for commercial laying hens

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Oscarina de Souza Batalha

2017-07-01

Full Text Available The objective of this study was to evaluate the effects of acid silage meal made of pirarucu waste in diets for commercial laying hens on apparent digestibility and energy metabolism. Seventy-two Hisex White hens with 71 weeks of age were assigned to a completely randomized with two treatments (control diet and diet with 3% pirarucu waste acid silage with six replicates of six birds each. The ensiled biomass was light brown in color, showing acidified aroma; creamy consistency; 4.38±0.11 pH; 84.16% dry matter; 40.06% crude protein; 26.82% ether extract; 9.31% mineral matter, 65.16 g kg-1 calcium and 22.90 g kg-1 phosphorus. Differences (p > 0.05 were detected in digestibility of crude protein, non-fiber carbohydrates (soluble carbohydrates, etherextract, mineral matter, metabolizable energy and metabolizable energy coefficient. Our results indicate that the acid silage mealmade of pirarucu waste can be included up to 3% in diets for laying hens, showing satisfactory nutrient digestibility and potential to be used as an energy source.

Environmental Sustainability and Traditional Knowledge in Management in the Amazon Pirarucu

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Kátia Cristina Cruz Santos

2016-06-01

Full Text Available The management of fisheries is in a causal or programmed human intervention directly from the wild or in captivity, with the aim of promoting the maintenance, recovery or control of fish stocks, contributing to the stability of ecosystems, ecological processes or systems production. Objective of this work is to study and establish the relationship between the conservation of biodiversity in the context of sustainability through traditional knowledge based on the management of the Amazon arapaima. In this sense the disentangling of this problem was theoretical research object, using the deductive method and bibliographic.

Pêche du poisson à des fins alimentaires en Amazonie (FCRSAI ...

International Development Research Centre (IDRC) Digital Library (Canada)

Il devrait multiplier par deux la production de paiche (Arapaima gigas), une espèce introduite ayant une valeur commerciale élevée. Il augmentera aussi la production aquacole (90 % de pacu et 10 % d'autres espèces) dans les régions ciblées. Au moins 2 200 familles pauvres augmenteront leurs revenus et jusqu'à 20 000 ...

Community-based management induces rapid recovery of a high-value tropical freshwater fishery

Science.gov (United States)

Campos-Silva, João Vitor; Peres, Carlos A.

2016-10-01

Tropical wetlands are highly threatened socio-ecological systems, where local communities rely heavily on aquatic animal protein, such as fish, to meet food security. Here, we quantify how a ‘win-win’ community-based resource management program induced stock recovery of the world’s largest scaled freshwater fish (Arapaima gigas), providing both food and income. We analyzed stock assessment data over eight years and examined the effects of protected areas, community-based management, and landscape and limnological variables across 83 oxbow lakes monitored along a ~500-km section of the Juruá River of Western Brazilian Amazonia. Patterns of community management explained 71.8% of the variation in arapaima population sizes. Annual population counts showed that protected lakes on average contained 304.8 (±332.5) arapaimas, compared to only 9.2 (±9.8) in open-access lakes. Protected lakes have become analogous to a high-interest savings account, ensuring an average annual revenue of US$10,601 per community and US$1046.6 per household, greatly improving socioeconomic welfare. Arapaima management is a superb window of opportunity in harmonizing the co-delivery of sustainable resource management and poverty alleviation. We show that arapaima management deserves greater attention from policy makers across Amazonian countries, and highlight the need to include local stakeholders in conservation planning of Amazonian floodplains.

Camallanus tridentatus (Drasche) (Nematoda: Camallanidae): new taxonomically important morphological data.

Science.gov (United States)

Santos, Cláudia Portes; Moravec, Frantisek

2009-02-01

Camallanus tridentatus is redescribed on the basis of the examination of specimens obtained from the stomach, caeca and intestine of the naturally infected arapaima Arapaima gigas (Schinz) from the Mexiana Island, Amazon River Delta, Brazil. Data on the surface morphology of adults inferred from confocal laser scanning and scanning electron microscopical observations are also provided. The study revealed some taxonomically important, previously unreported morphological features in this species, such as the presence of the poorly sclerotized left spicule and deirids. C. tridentatus distinctly differs from other congeneric species parasitizing freshwater fishes in South America mainly in the structure of the buccal capsule and the female caudal end. C. maculatus Martins, Garcia, Piazza and Ghiraldelli is considered a junior synonymm of Camallanus cotti Fujita.

Camallanus tridentatus (Drasche (Nematoda: Camallanidae: new taxonomically important morphological data

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Cláudia Portes Santos

2009-02-01

Full Text Available Camallanus tridentatus is redescribed on the basis of the examination of specimens obtained from the stomach, caeca and intestine of the naturally infected arapaima Arapaima gigas (Schinz from the Mexiana Island, Amazon River Delta, Brazil. Data on the surface morphology of adults inferred from confocal laser scanning and scanning electron microscopical observations are also provided. The study revealed some taxonomically important, previously unreported morphological features in this species, such as the presence of the poorly sclerotized left spicule and deirids. C. tridentatus distinctly differs from other congeneric species parasitizing freshwater fishes in South America mainly in the structure of the buccal capsule and the female caudal end. C. maculatus Martins, Garcia, Piazza and Ghiraldelli is considered a junior synonymm of Camallanus cotti Fujita.

Amélioration de la gouvernance du secteur piscicole dans le bassin ...

International Development Research Centre (IDRC) Digital Library (Canada)

depuis l'introduction du paiche (Arapaima gigas). La deuxième se trouvait dans le sud-est du bassin, où l'on fait l'élevage d'espèces indigènes comme le tambaqui. (Piaractus brachypomus). Premières incidences. Émergence de leaders locaux par recherche-action. L'un des principaux résultats fut de réunir les pêcheurs.

La gestion intégrée des pêches accroît la sécurité alimentaire en ...

International Development Research Centre (IDRC) Digital Library (Canada)

17 sept. 2013 ... Le paiche (Arapaima gigas) est un poisson d'eau douce d'Amérique du Sud dont la longueur peut atteindre 4 mètres et le poids, plus de 200 kilos. Aliment de choix ailleurs en Amazonie, il est présent en Bolivie depuis les années 1960, et son aire de dispersion s'élargit rapidement. Les chercheurs sont ...

Effect of ions on the activity of brain acetylcholinesterase from tropical fish

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Caio Rodrigo Dias Assis

2015-07-01

Full Text Available Objective: To investigate the effect of ions on brain acetylcholinesterase (AChE; EC 3.1.1.7 activities from economic important fish [pirarucu, Arapaima gigas; tambaqui, Colossoma macropomum; cobia, Rachycentron canadum (R. canadum and Nile tilapia, Oreochromis niloticus (O. niloticus] comparing with a commercial enzyme from electric eel [Electrophorus electricus (E. electricus]. Methods: The in vitro exposure was performed at concentrations ranging from 0.001 to 10 mmol/L (except for ethylene diamine tetraacetic acid; up to 150 mmol/L. Inhibition kinetics on R. canadum and O. niloticus were also observed through four methods (Michaelis-Menten, Lineweaver-Burk, Dixon and Cornish-Bowden plots in order to investigate the type of inhibition produced by some ions. Results: Hg 2+ , As 3+ , Cu 2+ , Zn 2+ , Cd 2+ caused inhibition in all the species under study. Ca 2+ , Mg 2+ and Mn 2+ induced slight activation in R. canadum enzyme while Pb 2+ , Ba 2+ , Fe 2+ , Li + inhibited the AChE from some of the analyzed species. The lowest IC 50 and Ki values were estimated for E. electricus AChE in presence of Hg 2+ , Pb 2+ , Zn 2+ . Under our experimental conditions, the results for R. canadum and O. niloticus, As 3+ , Cu 2+ , Cd 2+ , Pb 2+ and Zn 2+ showed a non- competitive/mixed-type inhibition, while Hg 2+ inhibited the enzyme in a mixed/competitive- like manner. Conclusions: E. electricus AChE activity was affected by ten of fifteen ions under study showing that this enzyme could undergo interference by these ions when used as pesticide biosensor in environmental analysis. This hindrance would be less relevant for the crude extracts.

The limiting layer of fish scales: Structure and properties.

Science.gov (United States)

Arola, D; Murcia, S; Stossel, M; Pahuja, R; Linley, T; Devaraj, Arun; Ramulu, M; Ossa, E A; Wang, J

2018-02-01

Fish scales serve as a flexible natural armor that have received increasing attention across the materials community. Most efforts in this area have focused on the composite structure of the predominately organic elasmodine, and limited work addresses the highly mineralized external portion known as the Limiting Layer (LL). This coating serves as the first barrier to external threats and plays an important role in resisting puncture. In this investigation the structure, composition and mechanical behavior of the LL were explored for three different fish, including the arapaima (Arapaima gigas), the tarpon (Megalops atlanticus) and the carp (Cyprinus carpio). The scales of these three fish have received the most attention within the materials community. Features of the LL were evaluated with respect to anatomical position to distinguish site-specific functional differences. Results show that there are significant differences in the surface morphology of the LL from posterior and anterior regions in the scales, and between the three fish species. The calcium to phosphorus ratio and the mineral to collagen ratios of the LL are not equivalent among the three fish. Results from nanoindentation showed that the LL of tarpon scales is the hardest, followed by the carp and the arapaima and the differences in hardness are related to the apatite structure, possibly induced by the growth rate and environment of each fish. The natural armor of fish, turtles and other animals, has become a topic of substantial scientific interest. The majority of investigations have focused on the more highly organic layer known as the elasmodine. The present study addresses the highly mineralized external portion known as the Limiting Layer (LL). Specifically, the structure, composition and mechanical behavior of the LL were explored for three different fish, including the arapaima (Arapaima gigas), the tarpon (Megalops atlanticus) and the carp (Cyprinus carpio). Results show that there are

Giga-Investments: Modelling the Valuation of Very Large Industrial Real Investments

OpenAIRE

Collan, Mikael

2004-01-01

In this doctoral dissertation characteristics of very large industrial real investments (VLIRI) are investigated and a special group of VLIRI is defined as giga-investments. The investment decision-making regarding to giga-investments is discussed from the points of view of discounted cash-flow based methods and real option valuation. Based on the bacground of establishing giga-investments, state-of-the-art in capital budgeting (including real options) and by applying fuzzy numbers a novel me...

The use of fuzzy real option valuation method to rank Giga ...

African Journals Online (AJOL)

The use of fuzzy real option valuation method to rank Giga Investment Projects on Iran's natural gas reserves. ... Journal of Fundamental and Applied Sciences ... methodology – discounted cash flow analysis – in valuation of Giga investments.

Moderate establishment success of Pacific oyster, Crassostrea gigas, on a sheltered intertidal mussel bed

DEFF Research Database (Denmark)

Holm, M.W.; Davids, J.K.; Dolmer, Per

2015-01-01

The Pacific oyster (Crassostrea gigas Thunberg 1793) is introduced into marine ecosystems worldwide. In Denmark, C. gigas was introduced into the micro tidal Limfjord, around 1972 for aquaculture. This study describes the population structure of C. gigas at Agger Tange in 2007, 2009, 2010 and 2011...

Parasitas em ostras de cultivo (Crassostrea rhizophorae e Crassostrea gigas da Ponta do Sambaqui, Florianópolis, SC Parasites in cultured oysters (Crassostrea rhizophorae and Crassostrea gigas from Ponta do Sambaqui, Florianópolis, SC

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R.C. Sabry

2005-09-01

Full Text Available Estudou-se a presença de parasitas e realizaram-se exames macroscópicos e histológicos em ostras (Crassostrea rhizophorae e Crassostrea gigas cultivadas. Entre agosto de 2002 a maio de 2003, 30 indivíduos adultos de cada espécie foram coletados sazonalmente, totalizando 240 ostras. Os animais, provenientes de desova em laboratório, foram mantidos em lanternas de cultivo, em sistema suspenso tipo espinhel, com densidade de 40 ostras/andar. A cada coleta era registrada a mortalidade das ostras, a temperatura e a salinidade da água. A temperatura variou de 19 a 28,5°C e a salinidade, 31 a 35‰. A mortalidade foi de 48,3% para C. gigas e 70,8% para C. rhizophorae. A infestação pelo poliqueta Polydora websteri em C. gigas foi 100% durante todo o período e em C. rhizophorae, 100% em fevereiro e maio. O mal do pé foi observado em novembro (3,3% e maio (23,3% em C. gigas e maio (6,6% em C. rhizophorae. As maiores prevalências do protozoário Nematopsis sp. foram de 70 e 60% em C. gigas e C. rhizophorae, respectivamente. O protozoário Trichodina sp. ocorreu em 1,6% de C. rhizophorae, e larvas do cestóide Tylocephalum sp. foram observadas em 2,5% de C. gigas. Nenhum dos parasitas encontrados foi associado à mortalidade das ostras.Over a 10-month period, cultured oysters (Crassostrea rhizophorae and Crassostrea gigas from Ponta do Sambaqui, Florianopolis, Santa Catarina State were evaluated microscopically and histologically for parasite infection. Thirty mature individuals of each species were examined each season, for a total of 240 oysters. The animals, which originated from laboratory spawning, were kept in culture lanterns suspended in long-line systems at a density of 40 oysters per floor. Mortality, water temperature (19 to 28.5 ºC range and salinity (31 to 35‰ were recorded at each sampling. The total amount of dead oysters was 58 (48.3% to C. gigas and 85 (70.8% to C. rhizophorae. All C. gigas individuals were infected with

Mechanical adaptability of the Bouligand-type structure in natural dermal armour

Science.gov (United States)

Zimmermann, Elizabeth A.; Gludovatz, Bernd; Schaible, Eric; Dave, Neil K. N.; Yang, Wen; Meyers, Marc A.; Ritchie, Robert O.

2013-10-01

Arapaima gigas, a fresh water fish found in the Amazon Basin, resist predation by piranhas through the strength and toughness of their scales, which act as natural dermal armour. Arapaima scales consist of a hard, mineralized outer shell surrounding a more ductile core. This core region is composed of aligned mineralized collagen fibrils arranged in distinct lamellae. Here we show how the Bouligand-type (twisted plywood) arrangement of collagen fibril lamellae has a key role in developing their unique protective properties, by using in situ synchrotron small-angle X-ray scattering during mechanical tensile tests to observe deformation mechanisms in the fibrils. Specifically, the Bouligand-type structure allows the lamellae to reorient in response to the loading environment; remarkably, most lamellae reorient towards the tensile axis and deform in tension through stretching/sliding mechanisms, whereas other lamellae sympathetically rotate away from the tensile axis and compress, thereby enhancing the scale’s ductility and toughness to prevent fracture.

Aktsiasoovitus: Tarkvaratootja GigaMedia (GIGM) / Joel Kukemelk

Index Scriptorium Estoniae

Kukemelk, Joel

2009-01-01

Tarkvaralahenduste väljatöötamise ja nende litsentseerimisega ning Euroopa suuruselt neljandat online-mänguportaali Everest Poker omavasse ettevõtte GigaMedia (GIGM) aktsiatesse investeerimise ohtudest ning positiivsetest teguritest

Microsatellite markers for the silver arowana (Osteoglossum bicirrhosum, Osteoglossidae, Osteoglossiformes).

Science.gov (United States)

DE Jesus DA Silva, Themis; Hrbek, Tomas; Farias, Izeni P

2009-05-01

Osteoglossum bicirrhosum (silver arowana) is an important fish for the economy of the Amazon region, both as an ornamental fish and as a food fish. To provide tools for addressing ecological and genetic questions, we developed 19 polymorphic microsatellite markers that had between 2 and 7 alleles per locus in the 24 tested individuals. The transferability of many of the loci was confirmed for Osteoglossum ferreirai (black arowana) and Arapaima gigas, and for three African osteoglossiform species. © 2009 The Authors. Journal compilation © 2009 Blackwell Publishing Ltd.

Oviposition of Quesada gigas in weed no hostess: implication in pest management

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Douglas Henrique Bottura Maccagnan

Full Text Available ABSTRACT: This study recorded the choice of dry plant of Conyza spp as oviposition site by cicada Quesada gigas (Olivier, 1790. We presented issues of natural history of the cicadas that indicate the inability of immatures to complete life cycle in this species of plant. Some implications on cultures where Q. gigas has economic importance are also discussed.

Records of new localities and hosts for crustacean parasites in fish from the eastern Amazon in northern Brazil.

Science.gov (United States)

Oliveira, Marcos Sidney Brito; Corrêa, Lincoln Lima; Oliveira Ferreira, Drielly; Neves, Lígia Rigor; Tavares-Dias, Marcos

2017-06-01

The aim of this study was to investigate parasites crustacean fauna in Arapaima gigas , Cichla monoculus , Cichla ocellaris , Cichla jariina , Satanoperca jurupari , Leporinus friderici , Leporinus fasciatus , Hoplias malabaricus , Phractocephalus hemioliopterus , Serrasalmus altispinis , Pseudoplatystoma tigrinum and Potamotrygon motoro of the State Amapá and Pará, in northern Brazil. A total of 242 parasites, including Argulus elongatus , Argulus multicolor, Argulus juparanaensis , Argulus nattereri , Dolops discoidalis , Dolops longicauda , Braga patagonica , Braga fluviatilis , Livoneca guianensis and undetermined Lernaeidae, were collected from these hosts. The Argulus species had the greatest richness among the community of parasitic crustaceans. There was a low abundance of parasites among the hosts, other than D. discoidalis , was most abundant in the integument of A. gigas and P. tigrinum . Finally, the present study reported nine new hosts for the crustacean parasite species and expanded knowledge of the occurrence of some parasite species in the Jari River basin, in eastern Amazon.

Culture conditions improvement of Crassostrea gigas using a potential probiotic Bacillus sp strain.

Science.gov (United States)

Fdhila, Kais; Haddaji, Najla; Chakroun, Ibtissem; Dhiaf, Amel; Macherki, Mohammed Ezz Edine; Khouildi, Bochra; Lamari, Faouzi; Chaieb, Kamel; Abid, Nabil; Marzougui, Hajer; Khouadja, Sadok; Missaoui, Hechmi

2017-09-01

It is well demonstrated that some probiotics improve rearing water quality and thereby have beneficial effects on reared organisms. We conducted this study to determine the effect of Bacillus consortium on Crassostrea gigas reared in contemned seawater with indigo dye priory treated with Bacillus or no treated. This effect was studied by assessing hemocytes death using flow cytometry analysis. We found that the percentage of decolorization of indigo dye in polluted seawater in presence of C. gigas increased from 41% to 90% when using Bacillus consortium. In these conditions, the hemocytes mortality of reared C. gigas decreased from 87% to 56%. We have demonstrated also that seawater contemned with priory treated indigo with Bacillus consortium is less toxic than seawater contemned with the no treated indigo. The percentage of hemocytes death is 81% for the contemned seawater with indigo and 56% for no contemned seawater. This consortium shows a protector effect of C. gigas against Vibrio harveyi contemning reared seawater. Copyright © 2017 Elsevier Ltd. All rights reserved.

Estudos de cestóides de peixes do Brasil

Directory of Open Access Journals (Sweden)

A. Arandas Rego

1974-01-01

Full Text Available Os autores iniciam com este trabalho um estudo sistemático de determinação dos cestóides de peixes depositados na Coleção helmintológica do Instituto Oswaldo Cruz. São referidas ou descritas as seguintes espécies e seus hospedeiros: Schizochoerus liguloideus (Diesing, 1850 e Nesolecithus janicki Posche, 1922, ambas de Arapaima gigas (Cuvier, (piracuru; Gyrocotyle meandrica Herrera, 1946, de Callorhynchus callorhynchus (L., (quimera; Acanthobothrium dasybati Yamaguti, 1934 e Pterobothriidae não identificado, de uma arraia não determinada; três tipos larvares de trypanorrhyncha e um de Proteocephalidea, de Cynoscion striatus (Cuv. e C. leiarchus (pescadinha; Proteocephalus jandia Woodland, 1934, de um bagre não determinado. Monticellia siluri (Fuhrmann, 1916 e Amphoteromorphus praeputialis sp. n. de Cetopsis caecutiens e Nomimoscolex magna sp. n. de Pimelodus clarias (mandi.The authors start, with this note, a systematic study for determination of cestodes of fishes of the Helminthological Collection of the Instituto Oswaldo Cruz. The following species and hosts are refered and described: Schizochoerus liguloideus (Diesing, 1850 and Nesolecithus janicki poche, 1922 both of Arapaima gigas (Cuvier; Gyrocotyle meandrica Herrera, 1946 of Callorhynchus callorhynchus (L.,Acanthobothrium dasybati Yamaguti, 1934 and Pterobothriidae unidentified, of an indeterminate ray; three types of larvae of Trypanorrhyncha and type of Proteocephalidea, of Cynoscion striatus (Cuv. and C. leiarchus; Proteocephalus jandia Woodland, 1934 of an indeterminate catfish; Monticellia siluri (Furhrmann, 1916 and Amphoteromorphus praeputialis sp. n. of Cetopsis caecutiens and Nomimoscolex magna sp. n. of Pimelodus clarias.

The Fortune of the Commons: Participatory Evaluation of Small-Scale Fisheries in the Brazilian Amazon

Science.gov (United States)

Oviedo, Antonio F. P.; Bursztyn, Marcel

2016-05-01

This paper applies a participatory approach in evaluating small-scale fisheries, focusing on the Arapaima gigas fishery in the Brazilian Amazon. The evaluation uses the social-ecological system (SES) framework, adopted to explain the conditions needed for sustainability and user cooperation in natural resources management, as a more suitable alternative to the `blueprint' or `panaceas' approaches, based only on property rights or governmental intervention. However, managers and users often do not have the necessary information compiled and available for a specific SES while some actions need to be taken immediately. Thus, consensus and negotiation among stakeholders about SES variables may be useful to evaluate system performance and indicate actions to promote sustainability. In the case study, using a consensus-building model, we found that arapaima SES leads to sustainability and is far from being a case of `tragedy of the commons.' More investments in suitable monitoring and enforcement for adaptive management are recommended. Adopting an SES framework based on stakeholders' prospects may be useful until complete interdisciplinary studies become available so as to seek of sustainability in the long term.

JST Thesaurus Headwords and Synonyms: Crassostrea gigas [MeCab user dictionary for science technology term[Archive

Lifescience Database Archive (English)

Full Text Available MeCab user dictionary for science technology term Crassostrea gigas 名詞 一般 * * * * マ...ガキ マガキ マガキ Thesaurus2015 200906057106354047 C LS05 UNKNOWN_2 Crassostrea gigas

Fishery biology of jumbo flying squid Dosidicus gigas off Costa Rica Dome

Science.gov (United States)

Chen, Xinjun; Li, Jianghua; Liu, Bilin; Li, Gang; Lu, Huajie

2014-06-01

The jumbo flying squid ( Dosidicus gigas) population was surveyed with the help of Chinese squid jigging vessels off the Costa Rica Dome (4°-11°N, 90°-100°W) in 2009 and 2010. The daily catch of D. gigas in the two survey cruises ranged from 0 to 5.5 t and was mostly obtained from the areas bounded by 6°-9°N and 91°-94°W and by 6°30'-7°30'N and 96°-97°W. The sea surface temperature in the areas yielding the most catch ranged from 27.5 to 29°C. The sex ratio of the total catch was 3.75:1 (female: male). The mantle length of the squid ranged from 211 to 355 mm (male) and from 204 to 429 mm (female) with an average of 297.9 and 306.7 mm, respectively. In the relationship of the mantle length (mm) and body weight (g) of the squid, there was no significant difference between sexes. The female and male were at a similar maturity, and most individuals are maturing or have matured with a few females being spent. The size (mantle length) and age at the first sexual maturity were 297 mm and 195 d in females, and less than 211 mm and 130 d in males, respectively. Most of the sampled stomachs (70.6%) had no food remains. The major preys of the squids were fish, cephalopods and crustaceans, with the most abundant Myctophum orientale and D. gigas. The preys in more than 65% of the non-empty sampled stomachs evidenced the cannibalism of D. gigas. The results improved current understanding of the fishery biology of D. gigas off the Costa Rica Dome, which may facilitate the assessment and management of relative fishery resources.

GigaPan Technology to Enhance In-Class and In-Field Learning in Community College Settings

Science.gov (United States)

Villalobos, J. I.; Bentley, C.

2014-12-01

Community college students account for over 40% of all undergraduates in the United States as well as the majority of minority and non-traditional students attending undergraduate courses. Implementing innovative, cost effective, and formative pedagogies to the diverse backgrounds of students that typically enroll at a community is often a challenge. Interactive pedagogies in geology pose a unique challenge considering that students gain the most long-term knowledge when topics covered in a course are exposed to them in outdoor settings where they are allowed to explore and make connections. The ability to expose students to real world examples is challenging to many community college faculty considering that that many; lack funds or means for transportation of students, do not have administrative support on such endeavors, teach evening or night classes, or have a high percentage of students who are physically limited or have obligations to work and family. A joint collaborative between El Paso Community College (EPCC) and Northern Virginia Community College (NOVA) has explored the usage of GigaPan technology to create multi-layered online material to minimize these issues faced by many community college faculty and students. The primary layer of the online material is GigaPans of local geological sites that highlight large-scale structures in the El Paso, Texas region that are commonly used in local field trips and lab book material. The second layer is of Macro-GigaPans of hand samples of key outcrops from the primarily GigaPans which facilitate student learning, exploration, and ability to make connections by exploring smaller scale features of the primary layer. A third layer of online material, GigaPans of thin sections of hand samples (from secondary layers), and curriculum based on the GigaPans was then created to assist students in evaluating proposed hypotheses on the primary layers' geological origin. GigaPan cirriculum was utilized in introductory

IDENTIFICACIÓN MOLECULAR DE POBLACIONES BACTERIANAS ASOCIADAS AL CARACOL PALA (Strombus gigas DEL CARIBE COLOMBIANO

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EDINSON ACOSTA

2009-05-01

Full Text Available RESUMEN El caracol Pala, Strombus gigas (Strombidae, es de gran importancia ecológica y socioeconómica en el área caribeña colombiana. Sin embargo, es una especie catalogada como “vulnerable” y existe muy poca información referente a las especies bacterianas asociadas al caracol que puedan ser importantes para el desarrollo, manejo productivo y de seguridad acuícola de estos gastrópodos. En este trabajo, nosotros empleamos un estudio microbiológico y molecular de la región intergénica entre los genes 16S y 23S rDNA, análisis del gen rDNA 16S y secuenciación, para analizar las bacterias asociadas al caracol Pala (S. gigas. La composición de bacterias cultivables asociadas fue evaluada por su capacidad para crecer en agar marino y en medios de cultivos selectivos. De un total de 28 muestras analizadas encontramos que el número de bacterias cultivadas en condiciones aerobias fue de alrededor 106 ufc mL-1 donde las bacterias pertenecientes a la familia Vibrionacea fueron las más abundantes, cerca de >105 ufc mL-1 . El análisis molecular de la región intergénica entre los genes 16S y 23S rDNA de las diferentes muestras, reveló una gran complejidad bacteriana asociada a S. gigas. Las secuencias de los amplificados del gen rDNA 16S identificó Pseudoalteromonas sp., Halomonas sp., Psycrobacter sp., Cobetia sp., Pseudomonas sp. y Vibrios sp. Nuestros resultados podrían sugerir un rol importante de estas bacterias como componentes de la comunidad asociada al S. gigas. Esta información puede complementar los estudios que se están implementando en los procesos para la conservación y repoblamiento de las poblaciones de S. gigas en Colombia. Palabras clave: Strombus gigas, Caracol pala, Bacteria, Región intergénica 16S-23S, rDNA 16S. ABSTRACT The Queen Conch, Strombus gigas (Strombidae, is a species of great ecological and socioeconomic importance in the Caribbean area of Colombia. However, it is currently catalogued as �

DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas

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Gavery Mackenzie R

2010-08-01

Full Text Available Abstract Background DNA methylation is an epigenetic mechanism with important regulatory functions in animals. While the mechanism itself is evolutionarily ancient, the distribution and function of DNA methylation is diverse both within and among phylogenetic groups. Although DNA methylation has been well studied in mammals, there are limited data on invertebrates, particularly molluscs. Here we characterize the distribution and investigate potential functions of DNA methylation in the Pacific oyster (Crassostrea gigas. Results Methylation sensitive PCR and bisulfite sequencing PCR approaches were used to identify CpG methylation in C. gigas genes and demonstrated that this species possesses intragenic methylation. In silico analysis of CpGo/e ratios in publicly available sequence data suggests that DNA methylation is a common feature of the C. gigas genome, and that specific functional categories of genes have significantly different levels of methylation. Conclusions The Pacific oyster genome displays intragenic DNA methylation and contains genes necessary for DNA methylation in animals. Results of this investigation suggest that DNA methylation has regulatory functions in Crassostrea gigas, particularly in gene families that have inducible expression, including those involved in stress and environmental responses.

Effects of gamma irradiation on the yields of volatile extracts of Angelica gigas Nakai

International Nuclear Information System (INIS)

Seo, Hye-Young; Kim, Jun-Hyoung; Song, Hyun-Pa; Kim, Dong-Ho; Byun, Myung-Woo; Kwon, Joog-Ho; Kim, Kyong-Su

2007-01-01

The study was carried out to determine the effects of gamma irradiation on the volatile flavor components including essential oils, of Angelica gigas Nakai. The volatile organic compounds from non- and irradiated A. gigas Nakai at doses of 1, 3, 5, 10 and 20 kGy were extracted by a simultaneous steam distillation and extraction (SDE) method and identified by GC/MS analysis. A total of 116 compounds were identified and quantified from non- and irradiated A. gigas Nakai. The major volatile compounds were identified 2,4,6-trimethyl heptane, α-pinene, camphene, α-limonene, β-eudesmol, α-murrolene and sphatulenol. Among these compounds, the amount of essential oils in non-irradiated sample were 77.13%, and the irradiated samples at doses of 1, 3, 5, 10 and 20 kGy were 84.98%, 83.70%, 83.94%, 82.84% and 82.58%, respectively. Oxygenated terpenes such as β-eudesmol, α-eudesmol, and verbenone were increased after irradiation but did not correlate with the irradiation dose. The yields of active substances such as essential oil were increased after irradiation; however, the yields of essential oils and the irradiation dose were not correlated. Thus, the profile of composition volatiles of A. gigas Nakai did not change with irradiation

Effects of gamma irradiation on the yields of volatile extracts of Angelica gigas Nakai

Energy Technology Data Exchange (ETDEWEB)

Seo, Hye-Young; Kim, Jun-Hyoung [Department of Food and Nutrition, Chosun University, Gwangju 501-759 (Korea, Republic of); Song, Hyun-Pa; Kim, Dong-Ho; Byun, Myung-Woo [Radiation Food Science and Biotechnology Team, Korea Atomic Energy Research Institute, Daejeon 305-353 (Korea, Republic of); Kwon, Joog-Ho [Department of Food Science and Technology, Kyungpook National University, Daegu 702-701 (Korea, Republic of); Kim, Kyong-Su [Department of Food and Nutrition, Chosun University, Gwangju 501-759 (Korea, Republic of)], E-mail: kskim@chosun.ac.kr

2007-11-15

The study was carried out to determine the effects of gamma irradiation on the volatile flavor components including essential oils, of Angelica gigas Nakai. The volatile organic compounds from non- and irradiated A. gigas Nakai at doses of 1, 3, 5, 10 and 20 kGy were extracted by a simultaneous steam distillation and extraction (SDE) method and identified by GC/MS analysis. A total of 116 compounds were identified and quantified from non- and irradiated A. gigas Nakai. The major volatile compounds were identified 2,4,6-trimethyl heptane, {alpha}-pinene, camphene, {alpha}-limonene, {beta}-eudesmol, {alpha}-murrolene and sphatulenol. Among these compounds, the amount of essential oils in non-irradiated sample were 77.13%, and the irradiated samples at doses of 1, 3, 5, 10 and 20 kGy were 84.98%, 83.70%, 83.94%, 82.84% and 82.58%, respectively. Oxygenated terpenes such as {beta}-eudesmol, {alpha}-eudesmol, and verbenone were increased after irradiation but did not correlate with the irradiation dose. The yields of active substances such as essential oil were increased after irradiation; however, the yields of essential oils and the irradiation dose were not correlated. Thus, the profile of composition volatiles of A. gigas Nakai did not change with irradiation.

Occurrence of Quesada gigas on Schizolobium amazonicum trees in Maranhão and Pará States, Brazil Ocorrência de Quesada gigas em Schizolobium amazonicum em municípios do Maranhão e do Pará

Directory of Open Access Journals (Sweden)

José Cola Zanuncio

2004-09-01

Full Text Available An infestation of Quesada gigas Olivier (Hemiptera: Cicadidae on "paricá" Schizolobium amazonicum (Huber Ducken (Fabales: Fabaceae was reported in the Municipalities of Itinga, Maranhão State and Paragominas, Pará State. Nymphs of this insect on roots and adults and exuvias on trunks of the plant were observed. Exit holes of nymphs in the soil were also observed. The occurrence of Q. gigas on S. amazonicum shows the damage potential of this species and the necessity of developing integrated management programs for species of this group, specially in reforested areas with "paricá".Há relatos sobre a infestação de Quesada gigas Olivier (Hemiptera: Cicadidae em paricá Schizolobium amazonicum (Huber Ducken (Fabales: Fabaceae nos municípios de Itinga, Estado do Maranhão e Paragominas, Estado do Pará. Observaram-se ninfas nas raízes e adultos e exúvias nos troncos da planta. Orifícios no solo, de saída de ninfas móveis dessa cigarra também foram verificados. A ocorrência de Q. gigas em S. amazonicum mostra o potencial de danos da espécie e a necessidade de se desenvolver programas de manejo integrado de espécies desse grupo, principalmente Q. gigas, em áreas reflorestadas com paricá.

The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors.

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Yanouk Epelboin

Full Text Available Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The availability of the genome sequence of the Pacific oyster Crassostrea gigas represents a unique opportunity for a comprehensive assessment of the signal transduction pathways that the species has developed to deal with this unique habitat. We performed an in silico analysis to identify, annotate and classify protein kinases in C. gigas, according to their kinase domain taxonomy classification, and compared with kinome already described in other animal species. The C. gigas kinome consists of 371 protein kinases, making it closely related to the sea urchin kinome, which has 353 protein kinases. The absence of gene redundancy in some groups of the C. gigas kinome may simplify functional studies of protein kinases. Through data mining of transcriptomes in C. gigas, we identified part of the kinome which may be central during development and may play a role in response to various environmental factors. Overall, this work contributes to a better understanding of key sensing pathways that may be central for adaptation to a highly dynamic marine environment.

The biology and ecology of the jumbo squid Dosidicus gigas (Cephalopoda in Chilean waters: a review

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Christian M Ibáñez

2015-07-01

Full Text Available ABSTRACT. The jumbo squid Dosidicus gigas is the most abundant cephalopod species in the southeastern Pacific Ocean, which supports the biggest cephalopod fishery in the world. Due to its growing economic importance, the population growth and distributional expansion of this squid is being increasingly studied. Nevertheless, some basic features of the biology of D. gigas are still unknown or have been poorly investigated. In this review we summarize the known information regarding the biology and ecology of this species in the southeastern Pacific Ocean; we focus on the Chilean region in order to propose hypotheses and research lines for a better understanding the life history of this organism. Available data on the size structure, reproduction and genetics of D. gigas allows us to propose hypotheses related to the squid's life history traits. Based on the current literature and publications of colleagues, we propose two hypotheses regarding the effect of spatial variation on the life history of D. gigas. Hypothesis 1: Squids mature at large sizes and spawn in oceanic waters with warm temperatures where paralarvae and juveniles develop. Immature squids migrate near shore to feed, grow and mature, and then return to the offshore sites to spawn. Hypothesis 2: Alternatively, juvenile D. gigas in the oceanic zone do not migrate to coastal waters and mature at small sizes compared to individuals living near the coast that mature at larger size and migrate to oceanic waters to spawn. We provide background information about the feeding behavior and parasitism of this species, suggesting that D. gigas is an important trophic link in the southeastern Pacific marine ecosystem. However, more studies on the feeding habits, reproduction and parasite load are needed not only to test hypotheses proposed in this study, but also to advance the overall knowledge of this species.

Crassostrea gigas OYSTERS SMOKING: THE HOT AND WITH LIQUID SMOKE DEFUMAÇÃO DE OSTRAS Crassostrea gigas: A QUENTE E COM FUMAÇA LÍQUIDA

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Maria Luiza de Rodrigues de Souza

2007-07-01

Full Text Available The present study had as objective evaluates two techniques of traditional smoking the hot and with use of the liquid smoke, tends as control the Pacific oysters Crassostrea gigas cooked. They were appraised the sensorial characteristics and revenue of the processing. The animals were distributed in three treatments and the experimental design was completely randomized, with nine repetitions. For the sensorial analysis 30 fitting room were used, where each one was considered a block. There was not significant difference among the independent of the applied technique smoky oysters (T1 = 8.42% and T2 = 7.61%, but they differed of the control (T3 = 16.25%.In agreement with the applied methodology and with the results obtained in the sensorial analysis, the smoke oysters (independent of the applied technique are products with great acceptability and increased your sensorial characteristics. KEY-WORDS: Crassostrea gigas, oysters, hot smoking, liquid smoke. valiaram-se duas técnicas de defumação – tradicional a quente e com utilização da fumaça líquida –, tendo testemunha o cozimento de ostras do Pacífico Crassostrea gigas. Para tanto, examinaram-se as características sensoriais e rendimento do processamento. Distribuíram-se animais aleatoriamente, em três tratamentos, com delineamento experimental inteiramente casualizado e nove repetições. Para a análise sensorial, empregaram-se trinta provadores, considerando-se cada um deles um bloco. Não houve diferença significativa de rendimento entre as ostras defumadas, independentemente da técnica aplicada (T1 = 8,42% e T2 = 7,61%, mas elas diferiram da testemunha (T3 = 16,25%. De acordo com a metodologia aplicada e com os resultados obtidos nas análises sensoriais, as ostras defumadas (independentemente da técnica aplicada constituíram os produtos com maior aceitabilidade e houve incremento de suas características sensoriais. PALAVRAS-CHAVES: Crassostrea gigas, defumação a

The natural armors of fish: A comparison of the lamination pattern and structure of scales.

Science.gov (United States)

Murcia, Sandra; Lavoie, Ellen; Linley, Tim; Devaraj, Arun; Ossa, E Alex; Arola, D

2017-09-01

Fish scales exhibit a unique balance of flexibility, strength and toughness, which is essential to provide protection without encumbering locomotion. Although the mechanical behavior and structure of this natural armor are of recent interest, a comparison of these qualities from scales of different fish species has not been reported. In this investigation the armor of fish with different locomotion, size and protection needs were analyzed. Scales from the Arapaima gigas, the tarpon (Megalops atlanticus) and the carp (Cyprinus carpio) were compared in terms of the stacking sequence of individual plies and their microstructure. The scales were also compared with respect to anatomical position to distinguish site-specific functional differences. Results show that the lamination sequence of plies for the carp and tarpon exhibit a Bouligand structure with relative rotation of 75° between consecutive plies. The arapaima scales exhibit a cross-ply structure, with 90° rotation between adjacent plies. In addition, results indicate that the volume fraction of reinforcement, the number of plies and the variations in thickness with anatomical position are unique amongst the three fish. These characteristics should be considered in evaluations focused on the mechanical behavior. Copyright © 2016 Elsevier Ltd. All rights reserved.

The natural armors of fish: A comparison of the lamination pattern and structure of scales

Energy Technology Data Exchange (ETDEWEB)

Murcia, Sandra; Lavoie, Ellen; Linley, Tim; Devaraj, Arun; Ossa, E. Alex; Arola, D.

2017-09-01

Fish scales exhibit a unique balance of flexibility, strength and toughness, which is essential to provide protection without encumbering locomotion. Although the mechanical behavior and structure of this natural armor are of recent interest, a comparison of these qualities from scales of different fish species has not been reported. In this investigation the armor of fish with different locomotion, size and protection needs were analyzed. Scales from the Arapaima gigas, the tarpon (Megalops atlanticus) and the carp (Cyprinus carpio) were compared in terms of the stacking sequence of individual plies and their microstructure. The scales were also compared with respect to anatomical position to distinguish site-specific functional differences. Results show that the lamination sequence of plies for the carp and tarpon exhibit a Bouligand structure with relative rotation of 75° between consecutive plies. The arapaima scales exhibit a cross-ply structure, with 90° rotation between adjacent plies. In addition, results indicate that the volume fraction of reinforcement, the number of plies and the variations in thickness with anatomical position are unique amongst the three fish. These characteristics should be considered in evaluations focused on the mechanical behavior.

Viral gametocytic hypertrophy of the Pacific oyster Crassostrea gigas in Ireland.

Science.gov (United States)

Cheslett, Deborah; McKiernan, Frank; Hickey, Cathy; Collins, Evelyn

2009-02-25

Viral gametocytic hypertrophy (VGH) was detected during an investigation of mortalities in Pacific oysters Crassostrea gigas from 2 separate Irish production sites. The basophilic inclusions were observed in the gonad tissue of oysters sampled in August and October 2007. The oysters involved did not show any macroscopic disease signs. Transmission electron microscopy demonstrated the presence of viral particles in these intranuclear inclusions. The particles were small, non-enveloped, icosahedral and approximately 50 nm in diameter, and thus had characteristics similar to the Papillomaviridae and Polyomaviridae families. No host defence reaction was observed. The viral particles described here appear to be similar to those described in C. virginica from the USA and Canada and to those described in C. gigas from Korea and France.

Coulomb explosion of methyl iodide clusters using giga watt laser ...

Indian Academy of Sciences (India)

Administrator

... using giga watt laser pulses in the visible region: Effect of wavelength, polarisation and .... is governed by the product of ponderomotive energy and the total effec- .... gesting isotropic disintegration of multiply charged. CH3I cluster. It must be ...

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

KAUST Repository

Bracken-Grissom, Heather

2013-12-12

Over 95% of all metazoan (animal) species comprise the invertebrates, but very few genomes from these organisms have been sequenced. We have, therefore, formed a Global Invertebrate Genomics Alliance (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site () has been launched to facilitate this collaborative venture.

Development of Genome-Wide SSR Markers from Angelica gigas Nakai Using Next Generation Sequencing.

Science.gov (United States)

Gil, Jinsu; Um, Yurry; Kim, Serim; Kim, Ok Tae; Koo, Sung Cheol; Reddy, Chinreddy Subramanyam; Kim, Seong-Cheol; Hong, Chang Pyo; Park, Sin-Gi; Kim, Ho Bang; Lee, Dong Hoon; Jeong, Byung-Hoon; Chung, Jong-Wook; Lee, Yi

2017-09-21

Angelica gigas Nakai is an important medicinal herb, widely utilized in Asian countries especially in Korea, Japan, and China. Although it is a vital medicinal herb, the lack of sequencing data and efficient molecular markers has limited the application of a genetic approach for horticultural improvements. Simple sequence repeats (SSRs) are universally accepted molecular markers for population structure study. In this study, we found over 130,000 SSRs, ranging from di- to deca-nucleotide motifs, using the genome sequence of Manchu variety (MV) of A. gigas, derived from next generation sequencing (NGS). From the putative SSR regions identified, a total of 16,496 primer sets were successfully designed. Among them, we selected 848 SSR markers that showed polymorphism from in silico analysis and contained tri- to hexa-nucleotide motifs. We tested 36 SSR primer sets for polymorphism in 16 A. gigas accessions. The average polymorphism information content (PIC) was 0.69; the average observed heterozygosity ( H O ) values, and the expected heterozygosity ( H E ) values were 0.53 and 0.73, respectively. These newly developed SSR markers would be useful tools for molecular genetics, genotype identification, genetic mapping, molecular breeding, and studying species relationships of the Angelica genus.

Environmental performance of aquaculture in Rondônia state, Brazil

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Aurélio Ferreira Borges

2015-04-01

Full Text Available The objective of this study was to analyze the environmental performance of aquaculture in the city of Colorado do Oeste, Rondônia State, Brazil. Fifteen fish farmers were interviewed. For data collection, structured interviews were carried out, using a questionnaire based on information supplied by the United Nations Food and Agriculture Organization (FAO. The questionnaire considered 12 items, organized into three main topics: a social and legal standards b environmental standards c standards of food safety and hygiene. The questionnaire considered 12 items, organized into three main topics: a social and legal standards b environmental standards c standards of food safety and hygiene. Aquaculture in the city of Colorado do Oeste, Rondônia presents two fish production systems: extensive and semi-intensive. In the semi-intensive system, stocking rate was one fish per m3, on average; tambaqui (Colossoma macropomum, tilapias (Oreochromis spp., pirarucu (Arapaima gigas and pintado (Pseudoplatystoma spp. were the species farmed at the largest number. The rate of water renewal was due to the greater availability of natural food in this system. Water renewal was constant in the ponds (1,500 liters per minute. In the semi-intensive system using dug ponds, alevins were stocked and fed during the entire rearing time with natural and exogenous food. The extensive system relied on the natural production of the pond, with stocking density limited by the production of natural food. The little renewal of water made the cultivation tank itself acted as a decantation lake, with the occurrence of oxidation and sedimentation of residual organic matter, consisting of feces, debris and organic fertilizer. Production of reduced effluent volume took place in the extensive system, compared to the cultivation area. In addition, there was high water turbidity, caused by high concentration of planktonic organisms, and low concentrations of dissolved oxygen in the water

Identificación de parásitos en paiches “Arapaima gigas” juveniles

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Lisandro Tafur Zevallos

2017-01-01

Full Text Available El objetivo de este estudio fue i dentificar parasitosis en paiches juveniles “ Arapaima gigas” , criados en cautiverio en el instituto de Investigaciones de la Amazonia Peruana (IIAP - Ucayali Perú. En una población de 190 juveniles se tomó una muestra al azar de 50 ejemplares de 2,5 años de edad . La técnica de evaluación fue visual - directa y microscópica. Se identificaron 5 ectoparásitos: Trichodina sp . (Protozoario ciliado, Dolosp sp . (Crustáceo, Dawestrema cycloancistrium (Monogeneo, Dawestrema cycloancistroides (Monogeneo y Placobdella sp. (Sanguijuela; se encontraron 3 endoparásitos: Nilonema senticosum (Nemátodo, Caballerotrema sp . (Tremátodo y Gymnodinium sp. (Protozoario flagelado; no se identificaron hemoparásitos en los frotis sanguíneos. Los parásitos se localizaron en los siguie ntes órganos: f ilamentos branquiales ( Trichodina sp. Dawestrema cycloancistrium y Dawestrema cycloancistroides , piel y aletas ( Trichodina sp., Placobdella sp. y Dolosp sp. , vejiga aerífera o seudo pulmón ( Nilonema senticosum , intestino ( Caballerotrema s p. y estómago (Gymnodinium sp..

GigaTracker, a Thin and Fast Silicon Pixels Tracker

CERN Document Server

Velghe, Bob; Bonacini, Sandro; Ceccucci, Augusto; Kaplon, Jan; Kluge, Alexander; Mapelli, Alessandro; Morel, Michel; Noël, Jérôme; Noy, Matthew; Perktold, Lukas; Petagna, Paolo; Poltorak, Karolina; Riedler, Petra; Romagnoli, Giulia; Chiozzi, Stefano; Cotta Ramusino, Angelo; Fiorini, Massimiliano; Gianoli, Alberto; Petrucci, Ferruccio; Wahl, Heinrich; Arcidiacono, Roberta; Jarron, Pierre; Marchetto, Flavio; Gil, Eduardo Cortina; Nuessle, Georg; Szilasi, Nicolas

2014-01-01

GigaTracker, the NA62’s upstream spectrometer, plays a key role in the kinematically constrained background suppression for the study of the K + ! p + n ̄ n decay. It is made of three independent stations, each of which is a six by three cm 2 hybrid silicon pixels detector. To meet the NA62 physics goals, GigaTracker has to address challenging requirements. The hit time resolution must be better than 200 ps while keeping the total thickness of the sensor to less than 0.5 mm silicon equivalent. The 200 μm thick sensor is divided into 18000 300 μm 300 μm pixels bump-bounded to ten independent read-out chips. The chips use an end-of-column architecture and rely on time-over- threshold discriminators. A station can handle a crossing rate of 750 MHz. Microchannel cooling technology will be used to cool the assembly. It allows us to keep the sensor close to 0 C with 130 μm of silicon in the beam area. The sensor and read-out chip performance were validated using a 45 pixel demonstrator with a laser test setu...

Feeding behaviour and food selection in the horseshoe crab, Tachypleus gigas (Muller)

Digital Repository Service at National Institute of Oceanography (India)

Chatterji, A; Mishra, J.K.; Parulekar, A

The Indian horseshoe crab, Tachypleus gigas, is a benthic feeder which subsists mainly on molluscs, decayed organic matter and polychaetes, in order of prevalence. A strong and positive preference was recorded for molluscs over other food organisms...

Occurrence of Quesada gigas on Schizolobium amazonicum trees in Maranhão and Pará States, Brazil.

OpenAIRE

ZANUNCIO, J.C.; PEREIRA, F.F.; ZANUNCIO, T.V.; MARTINELLI, N.M.; PINON, T.B.M.; GUIMARÃES, E.M.

2004-01-01

An infestation of Quesada gigas Olivier (Hemiptera: Cicadidae) on "paricá" Schizolobium amazonicum (Huber) Ducken (Fabales: Fabaceae) was reported in the Municipalities of Itinga, Maranhão State and Paragominas, Pará State. Nymphs of this insect on roots and adults and exuvias on trunks of the plant were observed. Exit holes of nymphs in the soil were also observed. The occurrence of Q. gigas on S. amazonicum shows the damage potential of this species and the necessity of developing integrate...

Exploring Proteomic Variation in Pacific Oysters (Crassostrea gigas)

OpenAIRE

Venkataraman, Yaamini

2017-01-01

150 sibling Pacific oysters (Crassostrea gigas) were outplanted at five different sites around Puget Sound. Oysters were placed in exclusion cages either inside or outside of eelgrass beds. After a month of environmental exposure, gill tissue samples were collected for proteomic analyses. Initial DIA mass spectrometry methods on a subset of oysters (one per site and eelgrass condition, 10 total) provide data for upwards of 6,000 proteins. A subset of stress-related proteins reveal site-specif...

Viral gametocytic hypertrophy of Crassostrea gigas in France: from occasional records to disease emergence?

Science.gov (United States)

Garcia, Céline; Robert, Maeva; Arzul, Isabelle; Chollet, Bruno; Joly, Jean-Pierre; Miossec, Laurence; Comtet, Thierry; Berthe, Franck

2006-06-23

Viral gametocytic hypertrophy was reported for the first time in 2001 in Pacific oyster Crassostrea gigas in France. Since this date, the number of reported cases and the distribution area have increased every year; however, the cases are not associated with macroscopic signs or increased mortality rates. Both male and female gametes were hypertrophied and basophilic inclusions were observed in gamete nuclei. Transmission electron microscopy revealed the presence of viral particles in these intranuclear basophilic inclusions. These particles had characteristics similar to those of the Papillomaviridae and Polyoma viridae families: they were small, non-enveloped, icosahedral, and 44 to 56 nm in diameter. The viral particles were found in male, female and hermaphrodite oysters and no significant difference in viral infection was observed between those groups. The frequency of detection and the intensity of infection were low and no host defence reaction was recognised, suggesting that the viral particles had a weak impact on C. gigas. The viral particles described in the present study seem to be similar to these described in C. virginica in the USA and Canada and in C. gigas in Korea, but further studies are required to confirm their identity. The issue of a possible emergence of this infection is discussed.

A Comparative Study of Spatially Clustered Distribution of Jumbo Flying Squid (Dosidicus gigas) Offshore Peru

Institute of Scientific and Technical Information of China (English)

FENG Yongjiu; CUI Li; CHEN Xinjun; LIU Yu

2017-01-01

We examined spatially clustered distribution of jumbo flying squid (Dosidicus gigas) in the offshore waters of Peru bounded by 78°-86°W and 8°-20°S under 0.5°×0.5° fishing grid.The study is based on the catch-per-unit-effort (CPUE) and fishing effort from Chinese mainland squid jigging fleet in 2003-2004 and 2006-2013.The data for all years as well as the eight years (excluding E1 Ni(n)o events) were studied to examine the effect of climate variation on the spatial distribution of D.gigas.Five spatial clusters reflecting the spatial distribution were computed using K-means and Getis-Ord Gi* for a detailed comparative study.Our results showed that clusters identified by the two methods were quite different in terms of their spatial patterns,and K-means was not as accurate as Getis-Ord Gi*,as inferred from the agreement degree and receiver operating characteristic.There were more areas of hot and cold spots in years without the impact of El Ni(n)o,suggesting that such large-scale climate variations could reduce the clustering level ofD.gigas.The catches also showed that warm E1 Ni(n)o conditions and high water temperature were less favorable for D.gigas offshore Peru.The results suggested that the use of K-means is preferable if the aim is to discover the spatial distribution of each sub-region (cluster) of the study area,while Getis-Ord Gi* is preferable if the aim is to identify statistically significant hot spots that may indicate the central fishing ground.

A comparative study of spatially clustered distribution of jumbo flying squid ( Dosidicus gigas) offshore Peru

Science.gov (United States)

Feng, Yongjiu; Cui, Li; Chen, Xinjun; Liu, Yu

2017-06-01

We examined spatially clustered distribution of jumbo flying squid ( Dosidicus gigas) in the offshore waters of Peru bounded by 78°-86°W and 8°-20°S under 0.5°×0.5° fishing grid. The study is based on the catch-per-unit-effort (CPUE) and fishing effort from Chinese mainland squid jigging fleet in 2003-2004 and 2006-2013. The data for all years as well as the eight years (excluding El Niño events) were studied to examine the effect of climate variation on the spatial distribution of D. gigas. Five spatial clusters reflecting the spatial distribution were computed using K-means and Getis-Ord Gi* for a detailed comparative study. Our results showed that clusters identified by the two methods were quite different in terms of their spatial patterns, and K-means was not as accurate as Getis-Ord Gi*, as inferred from the agreement degree and receiver operating characteristic. There were more areas of hot and cold spots in years without the impact of El Niño, suggesting that such large-scale climate variations could reduce the clustering level of D. gigas. The catches also showed that warm El Niño conditions and high water temperature were less favorable for D. gigas offshore Peru. The results suggested that the use of K-means is preferable if the aim is to discover the spatial distribution of each sub-region (cluster) of the study area, while Getis-Ord Gi* is preferable if the aim is to identify statistically significant hot spots that may indicate the central fishing ground.

Characterization of dermal plates from armored catfish Pterygoplichthys pardalis reveals sandwich-like nanocomposite structure.

Science.gov (United States)

Ebenstein, Donna; Calderon, Carlos; Troncoso, Omar P; Torres, Fernando G

2015-05-01

Dermal plates from armored catfish are bony structures that cover their body. In this paper we characterized structural, chemical, and nanomechanical properties of the dermal plates from the Amazonian fish Pterygoplichthys pardalis. Analysis of the morphology of the plates using scanning electron microscopy (SEM) revealed that the dermal plates have a sandwich-like structure composed of an inner porous matrix surrounded by two external dense layers. This is different from the plywood-like laminated structure of elasmoid fish scales but similar to the structure of osteoderms found in the dermal armour of some reptiles and mammals. Chemical analysis performed using Fourier transform infrared spectroscopy (FTIR), differential scanning calorimetry (DSC) and X-ray diffraction (XRD) results revealed similarities between the composition of P. pardalis plates and the elasmoid fish scales of Arapaima gigas. Reduced moduli of P. pardalis plates measured using nanoindentation were also consistent with reported values for A. gigas scales, but further revealed that the dermal plate is an anisotropic and heterogeneous material, similar to many other fish scales and osteoderms. It is postulated that the sandwich-like structure of the dermal plates provides a lightweight and tough protective layer. Copyright © 2015 Elsevier Ltd. All rights reserved.

First isolation of Nocardia crassostreae from Pacific oysters (Crassostrea gigas) in Europe

NARCIS (Netherlands)

Engelsma, M.Y.; Roozenburg, I.; Joly, J.P.

2008-01-01

In summer 2006 an extensive mortality of Pacific oysters Crassostrea gigas occurred in Lake Grevelingen, the Netherlands. A sample of Pacific oysters was investigated for the presence of shellfish pathogens as potential causes of the mortality. Yellow-green lesions were observed in several oysters

Spatial distribution in a temperate coastal ecosystem of the wild stock of the farmed oyster Crassostrea gigas (Thunberg)

OpenAIRE

Cognie, B; Haure, Joel; Barille, L

2006-01-01

The Pacific oyster, Crassostrea gigas, well known throughout the world because of its ability to adapt to a wide range of environmental conditions, was introduced for cultivation into France on a massive scale in the 1970s. With global warming, the reproductive population, confined at the beginning to the south of the French Atlantic coast, became established at more northern latitudes (above 45 degrees 58'N), and wild C gigas began to colonize coastal areas such as our study site, Bourgneuf ...

Relationship between single nucleotide polymorphism of glycogen synthase gene of Pacific oyster Crassostrea gigas and its glycogen content

Science.gov (United States)

Liu, Siwei; Li, Qi; Yu, Hong; Kong, Lingfeng

2017-02-01

Glycogen is important not only for the energy supplementary of oysters, but also for human consumption. High glycogen content can improve the stress survival of oyster. A key enzyme in glycogenesis is glycogen synthase that is encoded by glycogen synthase gene GYS. In this study, the relationship between single nucleotide polymorphisms (SNPs) in coding regions of Crassostrea gigas GYS (Cg-GYS) and individual glycogen content was investigated with 321 individuals from five full-sib families. Single-strand conformation polymorphism (SSCP) procedure was combined with sequencing to confirm individual SNP genotypes of Cg-GYS. Least-square analysis of variance was performed to assess the relationship of variation in glycogen content of C. gigas with single SNP genotype and SNP haplotype. As a consequence, six SNPs were found in coding regions to be significantly associated with glycogen content ( P glycogen content ( P glycogen content and provided molecular biological information for the selective breeding of good quality traits of C. gigas.

Transcriptomic responses to salinity stress in the Pacific oyster Crassostrea gigas.

Directory of Open Access Journals (Sweden)

Xuelin Zhao

Full Text Available BACKGROUND: Low salinity is one of the main factors limiting the distribution and survival of marine species. As a euryhaline species, the Pacific oyster Crassostrea gigas is considered to be tolerant to relative low salinity. The genes that regulate C. gigas responses to osmotic stress were monitored using the next-generation sequencing of whole transcriptome with samples taken from gills. By RNAseq technology, transcript catalogs of up- and down-regulated genes were generated from the oysters exposed to low and optimal salinity seawater. METHODOLOGY/PRINCIPAL FINDINGS: Through Illumina sequencing, we reported 1665 up-regulated transcripts and 1815 down-regulated transcripts. A total of 45771 protein-coding contigs were identified from two groups based on sequence similarities with known proteins. As determined by GO annotation and KEGG pathway mapping, functional annotation of the genes recovered diverse biological functions and processes. The genes that changed expression significantly were highly represented in cellular process and regulation of biological process, intracellular and cell, binding and protein binding according to GO annotation. The results highlighted genes related to osmoregulation, signaling and interactions of osmotic stress response, anti-apoptotic reactions as well as immune response, cell adhesion and communication, cytoskeleton and cell cycle. CONCLUSIONS/SIGNIFICANCE: Through more than 1.5 million sequence reads and the expression data of the two libraries, the study provided some useful insights into signal transduction pathways in oysters and offered a number of candidate genes as potential markers of tolerance to hypoosmotic stress for oysters. In addition, the characterization of C. gigas transcriptome will not only provide a better understanding of the molecular mechanisms about the response to osmotic stress of the oysters, but also facilitate research into biological processes to find underlying physiological

Microsatellite Analysis for Identification of Individuals Using Bone from the Extinct Steller's Sea Cow (Hydrodamalis gigas).

Science.gov (United States)

Warner, Jeffery F; Harpole, Michael G; Crerar, Lorelei D

2017-01-01

Microsatellite DNA can provide more detailed population genetic information than mitochondrial DNA which is normally used to research ancient bone. The methods detailed in this chapter can be utilized for any type of bone. However, for this example, four microsatellite loci were isolated from Steller's sea cow (Hydrodamalis gigas) using published primers for manatee and dugong microsatellites. The primers DduC05 (Broderick et al., Mol Ecol Notes 6:1275-1277, 2007), Tmakb60, TmaSC5 (Pause et al., Mol Ecol Notes 6: 1073-1076, 2007), and TmaE11 (Garcia-Rodriguez et al., Mol Ecol 12:2161-2163, 2000) all successfully amplified microsatellites from H. gigas. The DNA samples were from bone collected on Bering or St. Lawrence Islands. DNA was analyzed using primers with the fluorescent label FAM-6. Sequenced alleles were then used to indicate a difference in the number of repeats and thus a difference in individuals. This is the first time that H. gigas microsatellite loci have been isolated. These techniques for ancient bone microsatellite analysis allow an estimate of population size for a newly discovered St. Lawrence Island sea cow population.

A freak twin trilobite larva of the Indian horseshoe crab Tachypleus gigas (Muller)

Digital Repository Service at National Institute of Oceanography (India)

Mishra, J.K.; Chatterji, A.; Parulekar, A.H.

Early embryonic stages of a horseshoe crab Tachypleus gigas were studied using micrographs of live embryo. A freak egg showing two trilobite larvae bridged with each other was noticed on 38th day after fertilization. Morphology of this egg has been...

PENYERAPAN KARBON PADA BUDIDAYA RUMPUT LAUT Kappaphycus alvarezii dan Gracilaria gigas DI PERAIRAN TELUK GERUPUK, LOMBOK TENGAH, NUSA TENGGARA BARAT

Directory of Open Access Journals (Sweden)

Erlania Erlania

2013-08-01

Full Text Available Pengikatan karbon oleh algae fotoautotrofik berpotensi untuk mengurangi pelepasan CO2 ke atmosfer dan dapat membantu mencegah percepatan terjadinya pemanasan global. Penelitian ini bertujuan untuk menganalisis tingkat penyerapan karbon pada budidaya rumput laut Kappaphycus alvarezii dan Gracilaria gigas berdasarkan aktivitas fotosintesis serta variabel-variabel yang mempengaruhinya. Budidaya rumput laut dilakukan dengan metode long-line di perairan Teluk Gerupuk, Lombok Tengah pada satu unit long-line dengan luas area 1.250 m2. Selama penelitian, dilakukan pengujian terhadap sampel rumput laut dan sampel air laut dari lokasi budidaya yang diambil pada hari ke-0, 10, 20, 30, dan 45 pemeliharaan. Laju penyerapan karbon total berdasarkan biomassa panen pada G. gigas hampir 300% lebih tinggi dibandingkan K. alvarezii. Selain itu, laju pertumbuhan dan produksi karbohidrat pada G. gigas juga lebih tinggi, yang mengindikasikan laju fotosintesis yang lebih tinggi, dan didukung oleh indeks percabangan yang juga lebih tinggi. Potensi penyerapan karbon di perairan Teluk Gerupuk mencapai 6.656,51 ton C/tahun untuk budidaya K. Alvarezii dan 19.339,02 ton C/tahun untuk budidaya G. gigas. Penyerapan karbon berhubungan dengan kandungan pigmen dan laju pertumbuhan rumput laut, serta konsentrasi CO2 dan kecerahan perairan.

Molecular adaptation in the world's deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod Hirondellea gigas.

Science.gov (United States)

Lan, Yi; Sun, Jin; Tian, Renmao; Bartlett, Douglas H; Li, Runsheng; Wong, Yue Him; Zhang, Weipeng; Qiu, Jian-Wen; Xu, Ting; He, Li-Sheng; Tabata, Harry G; Qian, Pei-Yuan

2017-07-01

The Challenger Deep in the Mariana Trench is the deepest point in the oceans of our planet. Understanding how animals adapt to this harsh environment characterized by high hydrostatic pressure, food limitation, dark and cold is of great scientific interest. Of the animals dwelling in the Challenger Deep, amphipods have been captured using baited traps. In this study, we sequenced the transcriptome of the amphipod Hirondellea gigas collected at a depth of 10,929 m from the East Pond of the Challenger Deep. Assembly of these sequences resulted in 133,041 contigs and 22,046 translated proteins. Functional annotation of these contigs was made using the go and kegg databases. Comparison of these translated proteins with those of four shallow-water amphipods revealed 10,731 gene families, of which 5659 were single-copy orthologs. Base substitution analysis on these single-copy orthologs showed that 62 genes are positively selected in H. gigas, including genes related to β-alanine biosynthesis, energy metabolism and genetic information processing. For multiple-copy orthologous genes, gene family expansion analysis revealed that cold-inducible proteins (i.e., transcription factors II A and transcription elongation factor 1) as well as zinc finger domains are expanded in H. gigas. Overall, our results indicate that genetic adaptation to the hadal environment by H. gigas may be mediated by both gene family expansion and amino acid substitutions of specific proteins. © 2017 John Wiley & Sons Ltd.

Effect of linear alkylbenzene mixtures and sanitary sewage in biochemical and molecular responses in pacific oyster Crassostrea gigas.

Science.gov (United States)

Flores-Nunes, Fabrício; Mattos, Jacó J; Zacchi, Flávia L; Serrano, Miguel A S; Piazza, Clei E; Sasaki, Silvio T; Taniguchi, Satie; Bicego, Márcia C; Melo, Cláudio M R; Bainy, Afonso C D

2015-11-01

Urban effluents are rich in nutrients, organic matter, pharmaceuticals and personal care products (PPCPs), pesticides, hydrocarbons, surfactants, and others. Previous studies have shown that oysters Crassostrea gigas accumulate significant levels of linear alkylbenzenes (LABs) in sanitary sewage contaminated sites, but there is little information about its toxicological effects in marine bivalves. The aim of this study was to analyze the transcription of genes in two tissues of C. gigas exposed for 12, 24, and 36 h to LABs or sanitary sewage. Likewise, the activity of antioxidant and biotransformation enzymes was measured in oysters exposed for 36 h in all groups. Oysters exposed to LABs and oysters exposed to sanitary sewage showed different patterns of transcriptional responses. LAB-exposed oysters showed lower level of biological responses than the oysters exposed to sanitary sewage. Despite the ability of the oyster C. gigas to accumulate LABs (28-fold), the data indicate that these contaminants are not the cause for the transcriptional responses observed in oysters exposed to sanitary sewage. Possibly, the biological changes observed in the sanitary sewage-exposed oysters are associated with the presence of other contaminants, which might have caused synergistic, additive, or antagonistic effects. The results show that FABP-like and GST-ω-like messenger RNAs (mRNAs) have a rapid response in tissues of oyster C. gigas exposed to sanitary sewage, suggesting a possible protective response and a role in maintaining homeostasis of these organisms.

Energy source in the developing eggs of the Indian horseshoe crab, Tachypleus gigas (Muller)

Digital Repository Service at National Institute of Oceanography (India)

Chatterji, A.; Aguiar, Q.; Saldanha, C.

Wet weight, dry weight, water content, ash weight, soluble and insoluble proteins, carbohydrates, lipids, and glycogen were determined from 0 to 40th day after fertilization of the developing eggs of the Indian horseshoe crab, Tachypleus gigas...

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

KAUST Repository

Bracken-Grissom, Heather; Collins, Allen G.; Collins, Timothy; Crandall, Keith; Distel, Daniel; Dunn, Casey; Giribet, Gonzalo; Haddock, Steven; Knowlton, Nancy; Martindale, Mark; Medina, Monica; Messing, Charles; O'Brien, Stephen J.; Paulay, Gustav; Putnam, Nicolas; Ravasi, Timothy; Rouse, Greg W.; Ryan, Joseph F.; Schulze, Anja; Worheide, Gert; Adamska, Maja; Bailly, Xavier; Breinholt, Jesse; Browne, William E.; Diaz, M. Christina; Evans, Nathaniel; Flot, Jean-Francois; Fogarty, Nicole; Johnston, Matthew; Kamel, Bishoy; Kawahara, Akito Y.; Laberge, Tammy; Lavrov, Dennis; Michonneau, Francois; Moroz, Leonid L.; Oakley, Todd; Osborne, Karen; Pomponi, Shirley A.; Rhodes, Adelaide; Rodriguez-Lanetty, Mauricio; Santos, Scott R.; Satoh, Nori; Thacker, Robert W.; Van de Peer, Yves; Voolstra, Christian R.; Welch, David Mark; Winston, Judith; Zhou, Xin

2013-01-01

Over 95% of all metazoan (animal) species comprise the invertebrates, but very few genomes from these organisms have been sequenced. We have, therefore, formed a Global Invertebrate Genomics Alliance (GIGA). Our intent is to build a collaborative

Permanent genetic resources added to Molecular Ecology Resources Database 1 December 2010-31 January 2011.

Science.gov (United States)

Agata, Kiyokazu; Alasaad, Samer; Almeida-Val, Vera Maria Fonseca; Alvarez-Dios, J A; Barbisan, F; Beadell, Jon S; Beltrán, J F; Benítez, M; Bino, G; Bleay, Colin; Bloor, P; Bohlmann, Jörg; Booth, Warren; Boscari, E; Caccone, Adalgisa; Campos, Tatiana; Carvalho, B M; Climaco, Gisele Torres; Clobert, Jean; Congiu, L; Cowger, Christina; Dias, G; Doadrio, I; Farias, Izeni Pires; Ferrand, N; Freitas, Patrícia D; Fusco, G; Galetti, Pedro M; Gallardo-Escárate, Cristian; Gaunt, Michael W; Ocampo, Zaneli Gomez; Gonçalves, H; Gonzalez, E G; Haye, Pilar; Honnay, O; Hyseni, Chaz; Jacquemyn, H; Jowers, Michael J; Kakezawa, Akihiro; Kawaguchi, Eri; Keeling, Christopher I; Kwan, Ye-Seul; La Spina, Michelangelo; Lee, Wan-Ok; Leśniewska, M; Li, Yang; Liu, Haixia; Liu, Xiaolin; Lopes, S; Martínez, P; Meeus, S; Murray, Brent W; Nunes, Aline G; Okedi, Loyce M; Ouma, Johnson O; Pardo, B G; Parks, Ryan; Paula-Silva, Maria Nazaré; Pedraza-Lara, C; Perera, Omaththage P; Pino-Querido, A; Richard, Murielle; Rossini, Bruno C; Samarasekera, N Gayathri; Sánchez, Antonio; Sanchez, Juan A; Santos, Carlos Henrique Dos Anjos; Shinohara, Wataru; Soriguer, Ramón C; Sousa, Adna Cristina Barbosa; Sousa, Carolina Fernandes Da Silva; Stevens, Virginie M; Tejedo, M; Valenzuela-Bustamante, Myriam; Van de Vliet, M S; Vandepitte, K; Vera, M; Wandeler, Peter; Wang, Weimin; Won, Yong-Jin; Yamashiro, A; Yamashiro, T; Zhu, Changcheng

2011-05-01

This article documents the addition of 238 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Alytes dickhilleni, Arapaima gigas, Austropotamobius italicus, Blumeria graminis f. sp. tritici, Cobitis lutheri, Dendroctonus ponderosae, Glossina morsitans morsitans, Haplophilus subterraneus, Kirengeshoma palmata, Lysimachia japonica, Macrolophus pygmaeus, Microtus cabrerae, Mytilus galloprovincialis, Pallisentis (Neosentis) celatus, Pulmonaria officinalis, Salminus franciscanus, Thais chocolata and Zootoca vivipara. These loci were cross-tested on the following species: Acanthina monodon, Alytes cisternasii, Alytes maurus, Alytes muletensis, Alytes obstetricans almogavarii, Alytes obstetricans boscai, Alytes obstetricans obstetricans, Alytes obstetricans pertinax, Cambarellus montezumae, Cambarellus zempoalensis, Chorus giganteus, Cobitis tetralineata, Glossina fuscipes fuscipes, Glossina pallidipes, Lysimachia japonica var. japonica, Lysimachia japonica var. minutissima, Orconectes virilis, Pacifastacus leniusculus, Procambarus clarkii, Salminus brasiliensis and Salminus hilarii. © 2011 Blackwell Publishing Ltd.

Unambiguous range-Doppler LADAR processing using 2 giga-sample-per-second noise waveforms

International Nuclear Information System (INIS)

Cole, Z.; Roos, P.A.; Berg, T.; Kaylor, B.; Merkel, K.D.; Babbitt, W.R.; Reibel, R.R.

2007-01-01

We demonstrate sub-nanosecond range and unambiguous sub-50-Hz Doppler resolved laser radar (LADAR) measurements using spectral holographic processing in rare-earth ion doped crystals. The demonstration utilizes pseudo-random-noise 2 giga-sample-per-second baseband waveforms modulated onto an optical carrier

Unambiguous range-Doppler LADAR processing using 2 giga-sample-per-second noise waveforms

Energy Technology Data Exchange (ETDEWEB)

Cole, Z. [S2 Corporation, 2310 University Way 4-1, Bozeman, MT 59715 (United States)]. E-mail: cole@s2corporation.com; Roos, P.A. [Spectrum Lab, Montana State University, P.O. Box 173510, Bozeman, MT 59717 (United States); Berg, T. [S2 Corporation, 2310 University Way 4-1, Bozeman, MT 59715 (United States); Kaylor, B. [S2 Corporation, 2310 University Way 4-1, Bozeman, MT 59715 (United States); Merkel, K.D. [S2 Corporation, 2310 University Way 4-1, Bozeman, MT 59715 (United States); Babbitt, W.R. [Spectrum Lab, Montana State University, P.O. Box 173510, Bozeman, MT 59717 (United States); Reibel, R.R. [S2 Corporation, 2310 University Way 4-1, Bozeman, MT 59715 (United States)

2007-11-15

We demonstrate sub-nanosecond range and unambiguous sub-50-Hz Doppler resolved laser radar (LADAR) measurements using spectral holographic processing in rare-earth ion doped crystals. The demonstration utilizes pseudo-random-noise 2 giga-sample-per-second baseband waveforms modulated onto an optical carrier.

Induction of gynogenetic haploidy in oyster Crassostrea gigas, using ultra violet irradiated sperms

Digital Repository Service at National Institute of Oceanography (India)

Goswami, U.

Eggs of Crassostrea gigas were fertilized with sperms exposed to different doses of UV irradiations by keeping a constant rate of 121.47 ergs. mm/2 sec/1 and changing the period of exposure from 4 to 90 sec. Samples of larvae were analysed...

Hábitos alimentarios de Dosidicus gigas (D' Orbigny, 1835 (Cephalopoda: Teuthoidea frente a la costa centro-sur de Chile Feeding habits of Dosidicus gigas (D'Orbigny, 1835 (Cephalopoda: Teuthoidea in the central-south coast off Chile

Directory of Open Access Journals (Sweden)

PATRICIO ULLOA

2006-12-01

Full Text Available Se estudiaron los hábitos alimentarios del calamar rojo Dosidicus gigas (D'Orbigny, 1835 frente a la costa de Chile centro-sur, durante el invierno del año 2005. Se examinaron un total de 52 estómagos, en todos los cuales había contenido alimentario. Los ejemplares provenían de pescas efectuadas por la flota arrastrera industrial que opera entre 36°39' S y 38°55'S sobre la merluza común Merluccius gayi (Guichenot 1848 y a una profundidad media de 290 m sobre la plataforma continental. Para la descripción del espectro trófico, alimento principal y el establecimiento de las eventuales diferencias sexuales u ontogenéticas en la frecuencia de aparición de los ítemes presa, se utilizaron los métodos numérico, gravimétrico, de frecuencia de ocurrencia, índice de importancia relativa (IIR e índice de similitud porcentual (ISP. No se observaron diferencias sexuales ni ontogenéticas en la frecuencia de aparición de los ítemes presa. Los resultados muestran que D. gigas es un depredador oportunista, principalmente ictiófago, y secundariamente malacófago (incluye el canibalismo y carcinófago. Se discuten los eventuales motivos e implicancias de tal conductaA study on the feeding habits of the jumbo squid Dosidicus gigas (D'Orbigny, 1835 was carried out during the winter season 2005, in waters of the Chilean central and southern Pacific. A total of 52 jumbo squid stomachs from the fishing of the continental slope were collected and examined, in the Eighth and Ninth regions, between 36°40' S and 38°55'S, at an average depth of 290 m. To determine the trophic spectrum, the feeding preferences and the importance of the sex and ontogenetic condition in the diet, the numeric, gravimetric, frequency of occurrence methods, and the index of relative importance and dietary similarity were utilized. The frequency of the prey did not vary with relation to the sex and ontogenetic conditions, and was besides a hight trophic similarity in such

Effects of cadmium on aneuploidy and hemocyte parameters in the Pacific oyster, Crassostrea gigas

International Nuclear Information System (INIS)

Bouilly, Karine; Gagnaire, Beatrice; Bonnard, Marc; Thomas-Guyon, Helene; Renault, Tristan; Miramand, Pierre; Lapegue, Sylvie

2006-01-01

Pacific oysters, Crassostrea gigas, are commonly reared in estuaries where they are exposed to anthropogenic pollution. Much research has been made on the toxicity of cadmium to aquatic organisms because the compound recurrently contaminates their environment. Our study examined the influence of cadmium on aneuploidy level (lowered chromosome number in a percentage of somatic cells) and hemocyte parameters in C. gigas at different stages of life. Adults and juveniles were exposed to two different concentrations of cadmium. The first concentration applied was equivalent to a peak value found in Marennes-Oleron bay (Charente-Maritime, France; 50 ng L -1 ) and the second was 10 times higher (500 ng L -1 ). Exposure to 50 ng L -1 cadmium caused a significant decrease in the survival time of C. gigas, but exposure to 500 ng L -1 surprisingly affected the survival time positively. Significant differences in aneuploidy level were observed between the cadmium treatments and the control in adults but not in juveniles or the offspring of the adult groups. The effects of cadmium on hemocyte parameters were analyzed by flow cytometry. Several hemocyte parameters increased significantly after 21 days of cadmium exposure and subsequently decreased. Phenoloxidase-like activity, evaluated by spectrophotometry, varied over the time of the experiment and increased after 66 days of contact with 500 ng L -1 cadmium. Taken together, cadmium at environmentally relevant concentrations seems to have only moderate effects on aneuploidy and hemocyte parameters

GaN Initiative for Grid Applications (GIGA)

Energy Technology Data Exchange (ETDEWEB)

Turner, George [MIT Lincoln Lab., Lexington, MA (United States)

2015-07-03

For nearly 4 ½ years, MIT Lincoln Laboratory (MIT/LL) led a very successful, DoE-funded team effort to develop GaN-on-Si materials and devices, targeting high-voltage (>1 kV), high-power, cost-effective electronics for grid applications. This effort, called the GaN Initiative for Grid Applications (GIGA) program, was initially made up of MIT/LL, the MIT campus group of Prof. Tomas Palacios (MIT), and the industrial partner M/A Com Technology Solutions (MTS). Later in the program a 4th team member was added (IQE MA) to provide commercial-scale GaN-on-Si epitaxial materials. A basic premise of the GIGA program was that power electronics, for ubiquitous utilization -even for grid applications - should be closer in cost structure to more conventional Si-based power electronics. For a number of reasons, more established GaN-on-SiC or even SiC-based power electronics are not likely to reach theses cost structures, even in higher manufacturing volumes. An additional premise of the GIGA program was that the technical focus would be on materials and devices suitable for operating at voltages > 1 kV, even though there is also significant commercial interest in developing lower voltage (< 1 kV), cost effective GaN-on-Si devices for higher volume applications, like consumer products. Remarkable technical progress was made during the course of this program. Advances in materials included the growth of high-quality, crack-free epitaxial GaN layers on large-diameter Si substrates with thicknesses up to ~5 μm, overcoming significant challenges in lattice mismatch and thermal expansion differences between Si and GaN in the actual epitaxial growth process. Such thick epilayers are crucial for high voltage operation of lateral geometry devices such as Schottky barrier (SB) diodes and high electron mobility transistors (HEMTs). New “Normally-Off” device architectures were demonstrated – for safe operation of power electronics circuits. The trade-offs between lateral and

Spawning migration of the horseshoe crab, Tachypleus gigas (Muller), in relation to lunal cycle

Digital Repository Service at National Institute of Oceanography (India)

Chatterji, A.; Rathod, V.; Parulekar, A.H.

Effects of lunar phases and tidal height on the spawning migration of the horseshoe crab, Tachypleus gigas, along the northeastern coast of India were studied. Mature pairs of crabs migrate towards the shore and build their nests in sandy beaches...

Ocorrência de Quesada gigas em Schizolobium amazonicum em municípios do Maranhão e do Pará

OpenAIRE

Zanuncio, José Cola; Pereira, Fabrício Fagundes; Zanuncio, Teresinha Vinha; Martinelli, Nilza Maria; Pinon, Tobias Baruc Moreira; Guimarães, Edylene Marota

2004-01-01

An infestation of Quesada gigas Olivier (Hemiptera: Cicadidae) on "paricá" Schizolobium amazonicum (Huber) Ducken (Fabales: Fabaceae) was reported in the Municipalities of Itinga, Maranhão State and Paragominas, Pará State. Nymphs of this insect on roots and adults and exuvias on trunks of the plant were observed. Exit holes of nymphs in the soil were also observed. The occurrence of Q. gigas on S. amazonicum shows the damage potential of this species and the necessity of developing integrate...

Molecular and functional characterization of hemocyanin of the giant African millipede, Archispirostreptus gigas.

Science.gov (United States)

Damsgaard, Christian; Fago, Angela; Hagner-Holler, Silke; Malte, Hans; Burmester, Thorsten; Weber, Roy E

2013-05-01

In contrast to other terrestrial arthropods, where gaseous O2 that fuels aerobic metabolism diffuses to the tissues in tracheal tubes, and most other metazoans, where O2 is transported to tissues by circulating respiratory proteins, the myriapods (millipedes and centipedes) strikingly have tracheal systems as well as circulating hemocyanin (Hc). In order to elucidate the evolutionary origin and biological significance of millipede Hc, we report the molecular structure (subunit composition and amino acid sequence) of multimeric (36-mer) Hc from the forest floor-dwelling giant African millipede Archispirostreptus gigas and its allosteric oxygen-binding properties under various physico-chemical conditions. Archispirostreptus gigas Hc consists of only a single subunit type with differential glycosylation. Phylogenic analysis revealed that millipede Hc is a sister group to centipede HcA, which supports an early divergence of distinct Hc subunits in myriapods and an ancient origin of multimeric Hcs. Archispirostreptus gigas Hc binds O2 with a high affinity and shows a strong Bohr effect. O2 binding is, moreover, modulated by Ca(2+) ions, which increase the O2 affinity of the Hc in the tense (T; deoxygenated) as well as the relaxed (R; oxygenated) states, and by (l)-lactate, which modulates Hc-O2 affinity by changing the allosteric equilibrium constant, L. Cooperativity in O2 binding at half O2 saturation (n50) is pH dependent and maximal at ~pH 7.4, and the number of interacting O2-binding sites (q) is markedly increased by binding Ca(2+). The data are discussed in the light of the mutually supplementary roles of Hc and the tracheal system for tissue O2 supply.

GigA and GigB are Master Regulators of Antibiotic Resistance, Stress Responses, and Virulence in Acinetobacter baumannii.

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Gebhardt, Michael J; Shuman, Howard A

2017-05-15

A critical component of bacterial pathogenesis is the ability of an invading organism to sense and adapt to the harsh environment imposed by the host's immune system. This is especially important for opportunistic pathogens, such as Acinetobacter baumannii , a nutritionally versatile environmental organism that has recently gained attention as a life-threatening human pathogen. The emergence of A. baumannii is closely linked to antibiotic resistance, and many contemporary isolates are multidrug resistant (MDR). Unlike many other MDR pathogens, the molecular mechanisms underlying A. baumannii pathogenesis remain largely unknown. We report here the characterization of two recently identified virulence determinants, GigA and GigB, which comprise a signal transduction pathway required for surviving environmental stresses, causing infection and antibiotic resistance. Through transcriptome analysis, we show that GigA and GigB coordinately regulate the expression of many genes and are required for generating an appropriate transcriptional response during antibiotic exposure. Genetic and biochemical data demonstrate a direct link between GigA and GigB and the nitrogen phosphotransferase system (PTS Ntr ), establishing a novel connection between a novel stress response module and a well-conserved metabolic-sensing pathway. Based on the results presented here, we propose that GigA and GigB are master regulators of a global stress response in A. baumannii , and coupling this pathway with the PTS Ntr allows A. baumannii to integrate cellular metabolic status with external environmental cues. IMPORTANCE Opportunistic pathogens, including Acinetobacter baumannii , encounter many harsh environments during the infection cycle, including antibiotic exposure and the hostile environment within a host. While the development of antibiotic resistance in A. baumannii has been well studied, how this organism senses and responds to environmental cues remain largely unknown. Herein, we

DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigas

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Hsiao, Sheng-Tai; Chuang, Shin-Chang; Chen, Kao-Sung; Ho, Ping-Ho; Wu, Chi-Lun; Chen, Chaolun Allen

2016-09-01

The Pacific cupped oyster, Crassostrea gigas, is one of the major aquacultural shellfish species that has been introduced to Europe and America from its native source in the West Pacific. In Taiwan, the cultivated cupped oysters along the west coast have been identified as C. gigas for over centuries; however, several molecular phylogenetic studies have cast doubt upon the existence of this species in Taiwan and adjacent waters. Indeed, our analyses of mitochondrial cytochrome oxidase I (COI) sequences from 313 Crassostrea collected from 12 locations along Taiwanese and southern Chinese coastlines confirm that all samples were the Portuguese oyster, C. angulata, rather than C. gigas. Multiple lines of evidence, including haplotypic and nucleotide diversity of the COI gene, demographic history, and population genetics, suggest that Taiwanese C. angulata is unique, probably experienced a sudden population expansion after the Last Glacial Maxima around 20,000 years ago, and has a significantly limited genetic connectivity across the Taiwan Strait. Our study applies an extended sampling and DNA barcoding to confirm the absence of C. gigas in natural and cultivated populations in Taiwan and southern China, where we only found C. angulata. We highlight the importance of conserving the gene pool of the C. angulata population in Taiwan, particularly considering the current threats by large-scale environmental disturbances such as marine pollution, habitat destruction, and climate change.

Counting the dead to determine the source and transmission of the marine herpesvirus OsHV-1 in Crassostrea gigas.

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Whittington, Richard J; Paul-Pont, Ika; Evans, Olivia; Hick, Paul; Dhand, Navneet K

2018-04-10

Marine herpesviruses are responsible for epizootics in economically, ecologically and culturally significant taxa. The recent emergence of microvariants of Ostreid herpesvirus 1 (OsHV-1) in Pacific oysters Crassostrea gigas has resulted in socioeconomic losses in Europe, New Zealand and Australia however, there is no information on their origin or mode of transmission. These factors need to be understood because they influence the way the disease may be prevented and controlled. Mortality data obtained from experimental populations of C. gigas during natural epizootics of OsHV-1 disease in Australia were analysed qualitatively. In addition we compared actual mortality data with those from a Reed-Frost model of direct transmission and analysed incubation periods using Sartwell's method to test for the type of epizootic, point source or propagating. We concluded that outbreaks were initiated from an unknown environmental source which is unlikely to be farmed oysters in the same estuary. While direct oyster-to-oyster transmission may occur in larger oysters if they are in close proximity (< 40 cm), it did not explain the observed epizootics, point source exposure and indirect transmission being more common and important. A conceptual model is proposed for OsHV-1 index case source and transmission, leading to endemicity with recurrent seasonal outbreaks. The findings suggest that prevention and control of OsHV-1 in C. gigas will require multiple interventions. OsHV-1 in C. gigas, which is a sedentary animal once beyond the larval stage, is an informative model when considering marine host-herpesvirus relationships.

Massive settlements of the Pacific oyster, Crassostrea gigas, in Scandinavia : Original paper

DEFF Research Database (Denmark)

Wrange, Anna-Lisa; Valero, Johanna; Harkestad, Lisbeth S.

2010-01-01

The Pacific oyster (Crassostrea gigas) is an important aquaculture species world-wide. Due to its wide environmental tolerance and high growth rate, it has also become a successful invader in many areas, leading to major ecosystem changes. Low water temperatures were previously believed to restri...... settlement in 2006, and in Norway, populations are established along the southwest coast to 60°N....

Massive settlements of the Pacific oyster, Crassostrea gigas, in Scandinavia : Invasion note

DEFF Research Database (Denmark)

Wrange, Anna-Lisa; Valero, Johanna; Harkestad, Lisbeth S.

2010-01-01

The Pacific oyster (Crassostrea gigas) is an important aquaculture species world-wide. Due to its wide environmental tolerance and high growth rate, it has also become a successful invader in many areas, leading to major ecosystem changes. Low water temperatures were previously believed to restri...... settlement in 2006, and in Norway, populations are established along the southwest coast to 60A degrees N....

Genetics of the Steller's Sea Cow (Hydrodamalis gigas): A Study of Ancient Bone Material

Science.gov (United States)

Crerar, Lorelei D.

Georg Wilhelm Steller was born 100 years before Darwin in 1709 and he was part of a vast exploration fifty years before Lewis and Clark explored America. Steller was important to the study of marine mammals because he was the only naturalist to see and describe the great northern sea cow ( Hydrodamalis gigas). Knowledge of an extinct population can be used to aid the conservation of a current population. Extraction of DNA from this extinct animal was performed in order to determine the population structure of the Steller's sea cow. A test was also developed that can definitively state whether or not a random bone sample came from H. gigas. This test could be used by the Fish and Wildlife Service (FWS) and the National Oceanic and Atmospheric Administration (NOAA) to examine material distributed in the North Pacific to determine whether samples are legally traded extinct Steller's sea cow or illegally traded extant marine mammal species protected under the Marine Mammal Protection Act (MMPA).

The electro-mechanical integration of the NA62 GigaTracker time tagging pixel detector

CERN Document Server

Morel, M; Aglieri Rinella, G; Carassiti, V; Ceccucci, A; Daguin, J; Fiorini, M; Jarron, P; Kaplon, J; Mapelli, A; Marchetto, F; Noy, M; Nuessle, G; Perktold, L; Petagna, P; Riedler, P

2010-01-01

The NA62 GigaTracker is a low mass time tagging hybrid pixel detector operating in a beam with a particle rate of 750 MHz. It consists of three stations with a sensor size of 60 × 27mm2 containing 18000 pixels, each 300 × 300μm2. The active area is connected to a matrix of 2 × 5 pixel ASICs, which time tag the arrival of the particles with a binning of 100 ps. The detector operates in vacuum at -20 to 0°C and the material budget per station must be below 0.5% X0. Due to the high radiation environment of 2 × 1014 1 MeV neutron equivalent cm−2/yr−1 it is planned to exchange the detector modules regularly. The low material budget, cooling requirements and the request for easy module access has driven the electro-mechanical integration of the GigaTracker, which is presented in this paper

Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure.

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Wei, Lei; Wang, Qing; Wu, Huifeng; Ji, Chenglong; Zhao, Jianmin

2015-01-01

The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being well understood. In this work, the effects of exposure to elevated pCO2 were characterized in gills and hepatopancreas of Crassostrea gigas using integrated proteomic and metabolomic approaches. Metabolic responses indicated that high CO2 exposure mainly caused disturbances in energy metabolism and osmotic regulation marked by differentially altered ATP, glucose, glycogen, amino acids and organic osmolytes in oysters, and the depletions of ATP in gills and the accumulations of ATP, glucose and glycogen in hepatopancreas accounted for the difference in energy distribution between these two tissues. Proteomic responses suggested that OA could not only affect energy and primary metabolisms, stress responses and calcium homeostasis in both tissues, but also influence the nucleotide metabolism in gills and cytoskeleton structure in hepatopancreas. This study demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas. The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being understood. To our knowledge, few studies have focused on the responses induced by pCO2 at both protein and metabolite levels. The pacific oyster C. gigas, widely distributed

The evolution of Root effect hemoglobins in the absence of intracellular pH protection of the red blood cell: insights from primitive fishes.

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Regan, Matthew D; Brauner, Colin J

2010-06-01

The Root effect, a reduction in blood oxygen (O(2)) carrying capacity at low pH, is used by many fish species to maximize O(2) delivery to the eye and swimbladder. It is believed to have evolved in the basal actinopterygian lineage of fishes, species that lack the intracellular pH (pH(i)) protection mechanism of more derived species' red blood cells (i.e., adrenergically activated Na(+)/H(+) exchangers; betaNHE). These basal actinopterygians may consequently experience a reduction in blood O(2) carrying capacity, and thus O(2) uptake at the gills, during hypoxia- and exercise-induced generalized blood acidoses. We analyzed the hemoglobins (Hbs) of seven species within this group [American paddlefish (Polyodon spathula), white sturgeon (Acipenser transmontanus), spotted gar (Lepisosteus oculatus), alligator gar (Atractosteus spatula), bowfin (Amia calva), mooneye (Hiodon tergisus), and pirarucu (Arapaima gigas)] for their Root effect characteristics so as to test the hypothesis of the Root effect onset pH value being lower than those pH values expected during a generalized acidosis in vivo. Analysis of the haemolysates revealed that, although each of the seven species displayed Root effects (ranging from 7.3 to 40.5% desaturation of Hb with O(2), i.e., Hb O(2) desaturation), the Root effect onset pH values of all species are considerably lower (ranging from pH 5.94 to 7.04) than the maximum blood acidoses that would be expected following hypoxia or exercise (pH(i) 7.15-7.3). Thus, although these primitive fishes possess Hbs with large Root effects and lack any significant red blood cell betaNHE activity, it is unlikely that the possession of a Root effect would impair O(2) uptake at the gills following a generalized acidosis of the blood. As well, it was shown that both maximal Root effect and Root effect onset pH values increased significantly in bowfin over those of the more basal species, toward values of similar magnitude to those of most of the more derived

Field clearance of an intertidal bivalve bed: relative significance of the co-occurring blue mussel Mytilus edulis and Pacific oyster Crassostrea gigas

DEFF Research Database (Denmark)

Vismann, Bent; Holm, Mark Wejlemann; Davids, Jens

2016-01-01

was estimated by combining field measurements of clearance rates and modelling of the bivalve bed (topography, biomass distribution, temporal and spatial water coverage and depth). The average density of C. gigas and M. edulis was 35 ± 36 and 1001 ± 685 ind. m−2, respectively. The water volume cleared during...... a tidal cycle was estimated at 45 838 m3, of which C. gigas and M. edulis contributed 9169 and 36 669 m3, respectively. Therefore, M. edulis contributed 4 times as much as C. gigas to the bivalve bed’s clearance, and the 2 bivalves were estimated to clear the water volume 1.9 times during each tidal cycle....... However, the estimated water column cleared during low tide is overestimated due to phytoplankton depletion. Hence, it is concluded that the bivalve bed clears the water close to 1 time each tidal cycle. This, together with a low dry weight of soft parts, indicates that the bivalve bed, in general...

Genetic variation assessed with microsatellites in mass selection lines of the Pacific oyster ( Crassostrea gigas) in China

Science.gov (United States)

Wang, Xubo; Li, Qi; Yu, Hong; Kong, Lingfeng

2016-12-01

Four successive mass selection lines of the Pacific oyster, Crassostrea gigas, selected for faster growth in breeding programs in China were examined at ten polymorphic microsatellite loci to assess the level of allelic diversity and estimate the effective population size. These data were compared with those of their base population. The results showed that the genetic variation of the four generations were maintained at high levels with an average allelic richness of 18.8-20.6, and a mean expected heterozygosity of 0.902-0.921. They were not reduced compared with those of their base population. Estimated effective population sizes based on temporal variances in microsatellite frequencies were smaller to that of sex ratio-corrected broodstock count estimates. Using a relatively large number of broodstock and keeping an equal sex ratio in the broodstock each generation may have contributed to retaining the original genetic diversity and maintaining relatively large effective population size. The results obtained in this study showed that the genetic variation was not affected greatly by mass selection progress and high genetic variation still existed in the mass selection lines, suggesting that there is still potential for increasing the gains in future generations of C. gigas. The present study provided important information for future genetic improvement by selective breeding, and for the design of suitable management guidelines for genetic breeding of C. gigas.

Fishery biology of the jumbo flying squid Dosidicus gigas off the Exclusive Economic Zone of Chilean waters

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Bilin Liu

2010-11-01

Full Text Available The jumbo flying squid Dosidicus gigas is widely distributed in the eastern Pacific Ocean and supports an important fishery. Although many studies have been carried out on the biology of this species, limited biological information is available in the waters outside the Exclusive Economic Zone of Chile (EEZ (20°S-41°S and 74°30’W-84°W. Three surveys were conducted in this area by the Chinese squid jigging vessels during the period from April 2006 to May 2008. The majority of the catch in the survey was from the two areas defined by 37°30’-41°S and 78°30’-80°W and by 25°-30°S and 76°-77°30’W. The sex ratio (M: F of the catch was 1: 2.48. The mean mantle length (ML was 376 mm for males with a range of 257-721 mm and 388.7 mm for females with a range of 236-837 mm. Two distinguished size classes, medium- and large-sized groups, were identified in this study with the medium-sized group (350-450 mm ML consisting of 89% of the total catch. The sizes at first sexual maturity were 638 mm ML for females and 565 mm ML for males. This study suggests that all the individuals examined were hatched from March 2007 to February 2008, indicating that D. gigas might spawn all year around with a peak spawning time from November 2007 to January 2008. Most of the stomachs analyzed had food remains. The preys included three major groups: fish (mainly lanternfish, cephalopods and crustaceans, but D. gigas was the dominant species in the stomach contents, showing strong evidence of cannibalism. The information obtained from this study improves our understanding of the fishery biology of D. gigas off Chile.

The invasive Pacific oyster, Crassostrea gigas, in Scandinavia coastal waters

DEFF Research Database (Denmark)

Dolmer, Per; Holm, Mark Wejlemann; Strand, Åsa

visualized the need for a continued collaboration between scientists in the Scandinavian countries, as the bio-invasion is a cross-border issue and management actions then have to be synchronized, and based on a “state of the art” knowledge of the Scandinavian bio-invasion of the species. The risk assessment......A massive invasion of the Pacific oyster, Crassostrea gigas , has occurred in Scandinavia during the last decade. The introduction and dispersal was described through collaboration between scientists from Sweden, Denmark and Norway. This work has been followed up by national activities that clearly...

PURIFICATION AND CHARACTERIZATION OF AN OXYGEN-LABILE, NAD-DEPENDENT ALCOHOL-DEHYDROGENASE FROM DESULFOVIBRIO-GIGAS

NARCIS (Netherlands)

HENSGENS, CMH; VONCK, J; VANBEEUMEN, J; VANBRUGGEN, EFJ; HANSEN, TA

A NAD-dependent, oxygen-labile alcohol dehydrogenase was purified from Desulfovibrio gigas. It was decameric, with subunits of M(r) 43,000. The best substrates were ethanol (K(m), 0.15 mM) and 1-propanol (K(m), 0.28 mM). N-terminal amino acid sequence analysis showed that the enzyme belongs to the

Exploitable Lipids and Fatty Acids in the Invasive Oyster Crassostrea gigas on the French Atlantic Coast

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Flore Dagorn

2016-05-01

Full Text Available Economic exploitation is one means to offset the cost of controlling invasive species, such as the introduced Pacific oyster (Crassostrea gigas Thunberg on the French Atlantic coast. Total lipid and phospholipid (PL fatty acids (FAs and sterols were examined in an invasive population of C. gigas in Bourgneuf Bay, France, over four successive seasons, with a view to identify possible sources of exploitable substances. The total lipid level (% dry weight varied from 7.1% (winter to 8.6% (spring. Of this, PLs accounted for 28.1% (spring to 50.4% (winter. Phosphatidylcholine was the dominant PL throughout the year (up to 74% of total PLs in winter. Plasmalogens were identified throughout the year as a series of eleven dimethylacetals (DMAs with chain lengths between C16 and C20 (up to 14.5% of PL FAs + DMAs in winter. Thirty-seven FAs were identified in the PL FAs. Eicosapentaenoic acid (20:5n-3 EPA/7.53% to 14.5% and docosahexaenoic acid (22:6n-3 DHA/5.51% to 9.5% were the dominant polyunsaturated FAs in all seasons. Two non-methylene-interrupted dienoic (NMID FAs were identified in all seasons: 7,13-docosadienoic and 7,15-docosadienoic acids, the latter being present at relatively high levels (up to 9.6% in winter. Twenty free sterols were identified, including cholesterol at 29.9% of the sterol mixture and about 33% of phytosterols. C. gigas tissues thus contained exploitable lipids for health benefits or as a potential source of high-quality commercial lecithin.

Exploitable Lipids and Fatty Acids in the Invasive Oyster Crassostrea gigas on the French Atlantic Coast

Science.gov (United States)

Dagorn, Flore; Couzinet-Mossion, Aurélie; Kendel, Melha; Beninger, Peter G.; Rabesaotra, Vony; Barnathan, Gilles; Wielgosz-Collin, Gaëtane

2016-01-01

Economic exploitation is one means to offset the cost of controlling invasive species, such as the introduced Pacific oyster (Crassostrea gigas Thunberg) on the French Atlantic coast. Total lipid and phospholipid (PL) fatty acids (FAs) and sterols were examined in an invasive population of C. gigas in Bourgneuf Bay, France, over four successive seasons, with a view to identify possible sources of exploitable substances. The total lipid level (% dry weight) varied from 7.1% (winter) to 8.6% (spring). Of this, PLs accounted for 28.1% (spring) to 50.4% (winter). Phosphatidylcholine was the dominant PL throughout the year (up to 74% of total PLs in winter). Plasmalogens were identified throughout the year as a series of eleven dimethylacetals (DMAs) with chain lengths between C16 and C20 (up to 14.5% of PL FAs + DMAs in winter). Thirty-seven FAs were identified in the PL FAs. Eicosapentaenoic acid (20:5n-3 EPA/7.53% to 14.5%) and docosahexaenoic acid (22:6n-3 DHA/5.51% to 9.5%) were the dominant polyunsaturated FAs in all seasons. Two non-methylene-interrupted dienoic (NMID) FAs were identified in all seasons: 7,13-docosadienoic and 7,15-docosadienoic acids, the latter being present at relatively high levels (up to 9.6% in winter). Twenty free sterols were identified, including cholesterol at 29.9% of the sterol mixture and about 33% of phytosterols. C. gigas tissues thus contained exploitable lipids for health benefits or as a potential source of high-quality commercial lecithin. PMID:27231919

The nuclear receptor gene family in the Pacific oyster, Crassostrea gigas, contains a novel subfamily group.

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Vogeler, Susanne; Galloway, Tamara S; Lyons, Brett P; Bean, Tim P

2014-05-15

Nuclear receptors are a superfamily of transcription factors important in key biological, developmental and reproductive processes. Several of these receptors are ligand- activated and through their ability to bind endogenous and exogenous ligands, are potentially vulnerable to xenobiotics. Molluscs are key ecological species in defining aquatic and terrestrial habitats and are sensitive to xenobiotic compounds in the environment. However, the understanding of nuclear receptor presence, function and xenobiotic disruption in the phylum Mollusca is limited. Here, forty-three nuclear receptor sequences were mined from the genome of the Pacific oyster, Crassostrea gigas. They include members of NR0-NR5 subfamilies, notably lacking any NR6 members. Phylogenetic analyses of the oyster nuclear receptors have been conducted showing the presence of a large novel subfamily group not previously reported, which is named NR1P. Homologues to all previous identified nuclear receptors in other mollusc species have also been determined including the putative heterodimer partner retinoid X receptor, estrogen receptor and estrogen related receptor. C. gigas contains a highly diverse set of nuclear receptors including a novel NR1 group, which provides important information on presence and evolution of this transcription factor superfamily in invertebrates. The Pacific oyster possesses two members of NR3, the sex steroid hormone receptor analogues, of which there are 9 in humans. This provides increasing evidence that steroid ligand specific expansion of this family is deuterostome specific. This new knowledge on divergence and emergence of nuclear receptors in C. gigas provides essential information for studying regulation of molluscan gene expression and the potential effects of xenobiotics.

New Insight for the Genetic Evaluation of Resistance to Ostreid Herpesvirus Infection, a Worldwide Disease, in Crassostrea gigas.

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Lionel Dégremont

Full Text Available The Pacific oyster, Crassostrea gigas, is the most important commercial oyster species cultivated in the world. Meanwhile, the ostreid herpesvirus 1 (OsHV-1 is one of the major pathogens affecting the Pacific oyster, and numerous mortality outbreaks related to this pathogen are now reported worldwide. To assess the genetic basis of resistance to OsHV-1 infection in spat C. gigas and to facilitate breeding programs for such a trait, if any exist, we compared the mortality of half- and full-sib families using three field methods and a controlled challenge by OsHV-1 in the laboratory. In the field, three methods were tested: (A one family per bag; (B one family per small soft mesh bag and all families inside one bag; (C same as the previous methods but the oysters were individually labelled and then mixed. The mean mortality ranged from 80 to 82% and was related to OsHV-1 based on viral DNA detection. The narrow-sense heritability for mortality, and thus OsHV-1 resistance, ranged from 0.49 to 0.60. The high positive genetic correlations across the field methods suggested no genotype by environment interaction. Ideally, selective breeding could use method B, which is less time- and space-consuming. The narrow sense heritability for mortality under OsHV-1 challenge was 0.61, and genetic correlation between the field and the laboratory was ranged from 0.68 to 0.75, suggesting a weak genotype by environment interaction. Thus, most of families showing the highest survival performed well in field and laboratory conditions, and a similar trend was also observed for families with the lowest survival. In conclusion, this is the first study demonstrating a large additive genetic variation for resistance to OsHV-1 infection in C. gigas, regardless of the methods used, which should help in selective breeding to improve resistance to viral infection in C. gigas.

New Insight for the Genetic Evaluation of Resistance to Ostreid Herpesvirus Infection, a Worldwide Disease, in Crassostrea gigas.

Science.gov (United States)

Dégremont, Lionel; Lamy, Jean-Baptiste; Pépin, Jean-François; Travers, Marie-Agnès; Renault, Tristan

2015-01-01

The Pacific oyster, Crassostrea gigas, is the most important commercial oyster species cultivated in the world. Meanwhile, the ostreid herpesvirus 1 (OsHV-1) is one of the major pathogens affecting the Pacific oyster, and numerous mortality outbreaks related to this pathogen are now reported worldwide. To assess the genetic basis of resistance to OsHV-1 infection in spat C. gigas and to facilitate breeding programs for such a trait, if any exist, we compared the mortality of half- and full-sib families using three field methods and a controlled challenge by OsHV-1 in the laboratory. In the field, three methods were tested: (A) one family per bag; (B) one family per small soft mesh bag and all families inside one bag; (C) same as the previous methods but the oysters were individually labelled and then mixed. The mean mortality ranged from 80 to 82% and was related to OsHV-1 based on viral DNA detection. The narrow-sense heritability for mortality, and thus OsHV-1 resistance, ranged from 0.49 to 0.60. The high positive genetic correlations across the field methods suggested no genotype by environment interaction. Ideally, selective breeding could use method B, which is less time- and space-consuming. The narrow sense heritability for mortality under OsHV-1 challenge was 0.61, and genetic correlation between the field and the laboratory was ranged from 0.68 to 0.75, suggesting a weak genotype by environment interaction. Thus, most of families showing the highest survival performed well in field and laboratory conditions, and a similar trend was also observed for families with the lowest survival. In conclusion, this is the first study demonstrating a large additive genetic variation for resistance to OsHV-1 infection in C. gigas, regardless of the methods used, which should help in selective breeding to improve resistance to viral infection in C. gigas.

A comparison of fishery biology of jumbo flying squid,Dosidicus gigas outside three Exclusive Economic Zones in the Eastern Pacific Ocean

Institute of Scientific and Technical Information of China (English)

LIU Bilin; CHEN Xinjun; YI Qian

2013-01-01

Although many studies on the fishery biology of jumbo flying squid,Dosidicus gigas,have been conducted in the coastal areas within Exclusive Economic Zones (EEZs) of various countries due to its commercial and ecological importance,limited biological information is available from waters outside these EEZs.In this paper,we examined D.gigas fishery biology from waters outside Chilean,Peruvian and Costa Rican EEZs,based on the fishery data collected by Chinese jigging vessels during 2006 to 2010.The dominant mantle lengths of D.gigas were 350-450 mm,250-400 mm and 250-350 mm outside Chilean,Peruvian and Costa Rican EEZs,respectively.Size structure analysis show that a medium-sized group existed mostly in the waters outside the Chilean and Peruvian EEZs,whereas a small-sized group occurred mainly in the waters outside the Costa Rican EEZ.The longevity of the squid outside the Costa Rican EEZ was less than 10 months,while most of those outside Chilean and Peruvian EEZs were about 1-1.5 years and very few large individuals were 1.5-2 years old.A higher percentage of mature individuals existed outside Costa Rican EEZ implying the region as a potential spawning ground,while lower proportions of mature squid outside the Peruvian and Chilean EEZs indicated that spawning may be occurring outside our study area.Spatial differences in sizes at maturity of the squid are thought to be result from different environmental factors especially different temperature and nutrition among the three areas.Stomach-content analysis showed that cannibalism was important in the diet of D.gigas.Stress generated by jigging may increase the incidence of cannibalism.

Non-Detriment Finding Regarding the Export of Queen conch (Lobatus gigas) from St Eustatius (Caribbean Netherlands)

NARCIS (Netherlands)

Graaf, de M.; Meijer zu Schlochteren, M.; Boman, E.

2014-01-01

Queen conch (Lobatus gigas (Strombidae; Gastropoda) is a large, long-lived marine gastropod that is widely distributed throughout the coastal zones of the Wider Caribbean region. Because of concern for its future the species was listed in Appendix II of the Convention on International Trade in

Identification and Functional Characterization of the Glycogen Synthesis Related Gene Glycogenin in Pacific Oysters (Crassostrea gigas).

Science.gov (United States)

Li, Busu; Meng, Jie; Li, Li; Liu, Sheng; Wang, Ting; Zhang, Guofan

2017-09-06

High glycogen levels in the Pacific oyster (Crassostrea gigas) contribute to its flavor, quality, and hardiness. Glycogenin (CgGN) is the priming glucosyltransferase that initiates glycogen biosynthesis. We characterized the full sequence and function of C. gigas CgGN. Three CgGN isoforms (CgGN-α, β, and γ) containing alternative exon regions were isolated. CgGN expression varied seasonally in the adductor muscle and gonadal area and was the highest in the adductor muscle. Autoglycosylation of CgGN can interact with glycogen synthase (CgGS) to complete glycogen synthesis. Subcellular localization analysis showed that CgGN isoforms and CgGS were located in the cytoplasm. Additionally, a site-directed mutagenesis experiment revealed that the Tyr200Phe and Tyr202Phe mutations could affect CgGN autoglycosylation. This is the first study of glycogenin function in marine bivalves. These findings will improve our understanding of glycogen synthesis and accumulation mechanisms in mollusks. The data are potentially useful for breeding high-glycogen oysters.

Giga-pixel lensfree holographic microscopy and tomography using color image sensors.

Directory of Open Access Journals (Sweden)

Serhan O Isikman

Full Text Available We report Giga-pixel lensfree holographic microscopy and tomography using color sensor-arrays such as CMOS imagers that exhibit Bayer color filter patterns. Without physically removing these color filters coated on the sensor chip, we synthesize pixel super-resolved lensfree holograms, which are then reconstructed to achieve ~350 nm lateral resolution, corresponding to a numerical aperture of ~0.8, across a field-of-view of ~20.5 mm(2. This constitutes a digital image with ~0.7 Billion effective pixels in both amplitude and phase channels (i.e., ~1.4 Giga-pixels total. Furthermore, by changing the illumination angle (e.g., ± 50° and scanning a partially-coherent light source across two orthogonal axes, super-resolved images of the same specimen from different viewing angles are created, which are then digitally combined to synthesize tomographic images of the object. Using this dual-axis lensfree tomographic imager running on a color sensor-chip, we achieve a 3D spatial resolution of ~0.35 µm × 0.35 µm × ~2 µm, in x, y and z, respectively, creating an effective voxel size of ~0.03 µm(3 across a sample volume of ~5 mm(3, which is equivalent to >150 Billion voxels. We demonstrate the proof-of-concept of this lensfree optical tomographic microscopy platform on a color CMOS image sensor by creating tomograms of micro-particles as well as a wild-type C. elegans nematode.

Oyster vasa-like gene as a marker of the germline cell development in Crassostrea gigas

International Nuclear Information System (INIS)

Fabioux, C.; Huvet, A.; Lelong, C.; Robert, R.; Pouvreau, S.; Daniel, J.Y.; Minguant, C.; Le Pennec, M.

2004-01-01

The oyster vasa-like gene was previously demonstrated to be specifically expressed in germline cells of adult oysters Crassostrea gigas. In the present study, this gene was used as a molecular marker to establish the developmental pattern of germline cells during oyster ontogenesis, using whole-mount in situ hybridization and real-time PCR. The Oyvlg transcripts appeared to be localized to the vegetal pole of unfertilized oocytes and maternally transmitted to embryos. At early development, these maternal transcripts were observed to segregate into a single blastomere, from the CD macromere of 2-cell stage to the 4d mesentoblast of blastula. From late blastula stage, the mesentoblast divided into two cell clumps that migrated to both sides of the larvae body and that would correspond to primordial germ cells (PGCs). Based on these results, we postulate that the germline of C. gigas is specified at early development by maternal cytoplasmic determinants including Oyvlg mRNAs, in putative PGCs that would differentiate into germinal stem cells in juvenile oysters

Impact of an icy winter on the Pacific oyster (Crassostrea gigas Thunberg, 1793) populations in Scandinavia

DEFF Research Database (Denmark)

Strand, Åsa; Blanda, Elisa; Bodvin, Torjan

2012-01-01

The Pacific oyster (Crassostrea gigas) is an invasive species that has dispersed into Scandinavia during the last few decades. The objective of this study was to evaluate the effects of extreme winter conditions on the mortality of the Pacific oyster in Scandinavia. The study was done by compilin...

Development and distribution of the non-indigenous Pacific oyster (Crassostrea gigas) in the Dutch Wadden Sea

NARCIS (Netherlands)

Fey-Hofstede, F.E.; Dankers, N.M.J.A.; Steenbergen, J.; Goudswaard, P.C.

2010-01-01

Pacific oysters (Crassostrea gigas) were first observed in the Dutch Wadden Sea near Texel in 1983. The population increased slowly in the beginning but grew exponentially from the mid-1990s onwards, although now some stabilisation seems to be occurring. They occur on a variety of substrates such as

Gonad Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Identifies Potential Genes Regulating the Sex Determination and Differentiation Process.

Science.gov (United States)

Yue, Chenyang; Li, Qi; Yu, Hong

2018-04-01

The Pacific oyster Crassostrea gigas is a commercially important bivalve in aquaculture worldwide. C. gigas has a fascinating sexual reproduction system consisting of dioecism, sex change, and occasional hermaphroditism, while knowledge of the molecular mechanisms of sex determination and differentiation is still limited. In this study, the transcriptomes of male and female gonads at different gametogenesis stages were characterized by RNA-seq. Hierarchical clustering based on genes differentially expressed revealed that 1269 genes were expressed specifically in female gonads and 817 genes were expressed increasingly over the course of spermatogenesis. Besides, we identified two and one gene modules related to female and male gonad development, respectively, using weighted gene correlation network analysis (WGCNA). Interestingly, GO and KEGG enrichment analysis showed that neurotransmitter-related terms were significantly enriched in genes related to ovary development, suggesting that the neurotransmitters were likely to regulate female sex differentiation. In addition, two hub genes related to testis development, lncRNA LOC105321313 and Cg-Sh3kbp1, and one hub gene related to ovary development, Cg-Malrd1-like, were firstly investigated. This study points out the role of neurotransmitter and non-coding RNA regulation during gonad development and produces lists of novel relevant candidate genes for further studies. All of these provided valuable information to understand the molecular mechanisms of C. gigas sex determination and differentiation.

Bioaccumulation of trace metals in farmed pacific oysters Crassostrea gigas from SW Gulf of California coast, Mexico.

Science.gov (United States)

Jonathan, M P; Muñoz-Sevilla, N P; Góngora-Gómez, Andrés Martin; Luna Varela, Raquel Gabriela; Sujitha, S B; Escobedo-Urías, D C; Rodríguez-Espinosa, P F; Campos Villegas, Lorena Elizabeth

2017-11-01

The aim of the study was to evaluate the bioavailability of trace metals (Chromium, Copper, Nickel, Lead, Zinc, Cadmium, Arsenic, and Mercury) in the commercially consumed Crassostrea gigas oysters collected over a 12-month growth period (2011-12) from an experimental cultivation farm in La Pitahaya, Sinaloa State, Mexico. Sediment and water samples were also collected from four different zones adjacent to the cultivation area to identify the concentration patterns of metals. The results revealed that sewage disposals, fertilizers used for agricultural practices and shrimp culture are the major sources for the enrichment of certain toxic metals. The metal concentrations in oysters presented a decreasing order of abundance (all values in mg Kg -1 ): Zn (278.91 ± 93.03) > Cu (63.13 ± 31.72) > Cr (22.29 ± 30.23) > Cd (14.54 ± 4.28) > Ni (9.41 ± 11.33) > Pb (2.22 ± 1.33) > As (0.58 ± 0.91) > Hg (0.04 ± 0.06). Bioconcentration Factor (BCF) and Biota Sediment Accumulation Factor (BSAF) exhibited that C. gigas in the region are strong accumulators for Zn and Cd respectively. Thus, the present study proves to fulfill the gap in understanding the rate of bioaccumulation of metals in C. gigas which is regarded as the most sought after oyster species globally. Copyright © 2017 Elsevier Ltd. All rights reserved.

Gigas Meets Ulysses

Science.gov (United States)

2003-01-01

[figure removed for brevity, see original site] Released 9 July 2003Roughly halfway between the great volcanoes of Olympus Mons and Pavonis Mons, the graben (troughs) of Ulysses Fossae intersect with the furrows of Gigas (gigantic) Sulci. A clear time sequence is evident: first came the formation of the sulci terrain (to the left), which then was fractured by graben radial to Olympus Mons, followed by flooding of lava. All but the deepest graben are filled by lava in the topographic low between the two volcanic rises.Image information: VIS instrument. Latitude 11.8, Longitude 234.3 East (125.7 West). 19 meter/pixel resolution.Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

In situ distribution and characterization of the organic content of the oyster shell Crassostrea gigas (Mollusca, Bivalvia).

Science.gov (United States)

Dauphin, Yannicke; Ball, Alexander D; Castillo-Michel, Hiram; Chevallard, Corinne; Cuif, Jean-Pierre; Farre, Bastien; Pouvreau, Stéphane; Salomé, Murielle

2013-01-01

Cultivation of commercial oysters is now facing the possible influence of global change in sea water composition, commonly referred to as "ocean acidification". In order to test the potential consequence of the predicted environmental changes, a cultivation experiment was carried out. The left and right valves of the oyster shell Crassostrea gigas differ in their structure; moreover, lenses of non compact layers are irregular. The shell layers of juvenile C. gigas are studied using a variety of highly spatially resolved techniques to establish their composition and structure. Our results confirm the presence of three different calcitic structural types. The role of the lenses of chalky layers is not yet deciplered. Despite a common mineralogy, the elemental composition of the layers differs. The sulphur aminoacids and sulphated polysaccharide contents of the intracrystalline and intercrystalline matrices differ, as well as those of the structural types. The possible different sensitivity of these structures to environmental changes is still unknown. Copyright © 2012 Elsevier Ltd. All rights reserved.

The NA62 GigaTracker

CERN Document Server

Perrin-Terrin, Mathieu

2015-01-01

The GigaTracker is an hybrid silicon pixel detector built for the NA62 experiment aiming at measuring the branching fraction of the ultra-rare kaon decay K + ! p + n ̄ n at the CERN SPS. The detector has to track particles in a beam with a flux reaching 1.3 MHz/mm 2 and provide single-hit timing with 200ps RMS resolution for a total material budget of less than 1.5 X 0 . The tracker comprises three 60.8mm 27mm stations installed in vacuum ( 10$^{-6}$ mbar) and cooled with liquid C 6 F 14 circulating through micro-channels etched inside few hundred of microns thick silicon plates. Each station is composed of a 200 m m thick silicon sensor readout by 2 x 5 cus- tom 100 m m thick ASIC, called TDCPix. Each chip contains 40 x 45 asynchronous pixels, each 300 m m x 300 m m and is instrumented with 100ps bin time-to-digital converters. In order to cope with the high rate, the TDCPix is equipped with four 3.2Gb/s serialisers sending out the data. We will describe the detector and the results from the 2014 NA62 ru...

Oxygen isotope fluctuations in a modern North Sea oyster (Crassostrea gigas) compared with annual variations in seawater temperature

DEFF Research Database (Denmark)

Ullmann, Clemens Vinzenz; Wiechert, Uwe; Korte, Christoph

2010-01-01

A total of 181 oxygen isotope values from sequential samples of the left shell of a modern Pacific Oyster (Crassostrea gigas) that lived on a sub-tidal oyster bank in the List Basin (North Sea, Germany) shows periodically varying values between + 1.3‰ and -2.5‰. In order to test whether these d18O...... fluctuations reflect seawater temperature changes, the isotope values of the shell were compared to actual seawater temperature variations from the region. C. gigas serves as an excellent proxy for temperature of palaeoseawater and the results show that the examined oyster precipitated its shell in d18O...... equilibrium with the ambient seawater. A cessation of the oyster shell calcification starts at water temperatures below 6 °C, at lower temperatures than previously thought for Crassostrea. For palaeoclimate investigations the termination of shell production is important because the lowest temperatures might...

Use of nanoindentation technique for a better understanding of the fracture toughness of Strombus gigas conch shell

International Nuclear Information System (INIS)

Romana, L.; Thomas, P.; Bilas, P.; Mansot, J.L.; Merrifiels, M.; Bercion, Y.; Aranda, D. Aldana

2013-01-01

In this work the nanochemical properties of the composite organomineral biomaterial constituting Strombus gigas conch shell are studied by means of dynamic mechanical analyses associated to nanoidentation technique. The measurements are performed on shell samples presenting different surface orientations relative to the growth axis of the conch shell. The influence of the organic component of the biomaterial on its nanomechanical properties is also investigated by studying fresh and dried S. gigas conch shells. Monocrystalline aragonite is used as a reference. For the understanding of nanochemical behaviour, special attention is paid to the pop in events observed on the load/displacement curves which results from nanofractures' initiation and propagation occuring during the load process. In order to better understand the mechanical properties systematic studies of the structure and morphology are performed using scanning electron microscopy, atomic force microscopy and X-ray diffractometry. The hardness and Young's modulus values measured on bio aragonite samples are close to those of the aragonite mineral standard. This surprising result shows that, H and E values are not related to the bio composition and lamellar structure of the bio aragonite. However, it was found that the organic layer and the micro architecture strongly influence the nanofracture initiation and propagation processes in the samples. Statistic study of the pop-in events can help to predict the macroscopic mechanical behaviour of the material. - Highlights: ► Nanomechanical properties of Strombus gigas conch shell ► Low influence of the crossed lamellar structure on H and E values at the nano scale ► Strong influence of the crossed lamellar on nanocracks initiation ► Correlation between mechanical behaviors at the macro and nano scales

Development of genomic microsatellite multiplex PCR using dye-labeled universal primer and its validation in pedigree analysis of Pacific oyster ( Crassostrea gigas)

Science.gov (United States)

Liu, Ting; Li, Qi; Song, Junlin; Yu, Hong

2017-02-01

There is an increasing requirement for traceability of aquaculture products, both for consumer protection and for food safety. There are high error rates in the conventional traceability systems depending on physical labels. Genetic traceability technique depending on DNA-based tracking system can overcome this problem. Genealogy information is essential for genetic traceability, and microsatellite DNA marker is a good choice for pedigree analysis. As increasing genotyping throughput of microsatellites, microsatellite multiplex PCR has become a fast and cost-effective technique. As a commercially important cultured aquatic species, Pacific oyster Crassostrea gigas has the highest global production. The objective of this study was to develop microsatellite multiplex PCR panels with dye-labeled universal primer for pedigree analysis in C. gigas, and these multiplex PCRs were validated using 12 full-sib families with known pedigrees. Here we developed six informative multiplex PCRs using 18 genomic microsatellites in C. gigas. Each multiplex panel contained a single universal primer M13(-21) used as a tail on each locus-specific forward primer and a single universal primer M13(-21) labeled with fluorophores. The polymorphisms of the markers were moderate, with an average of 10.3 alleles per locus and average polymorphic information content of 0.740. The observed heterozygosity per locus ranged from 0.492 to 0.822. Cervus simulations revealed that the six panels would still be of great value when massive families were analysed. Pedigree analysis of real offspring demonstrated that 100% of the offspring were unambiguously allocated to their parents when two multiplex PCRs were used. The six sets of multiplex PCRs can be an important tool for tracing cultured individuals, population genetic analysis, and selective breeding program in C. gigas.

Abundancia y distribución de larvas de Strombus gigas (Mesogastropoda: Strombidae durante el período reproductivo de la especie en el Caribe Mexicano Abundance and distribution of Strombus gigas (Mesogastropoda: Strombidae larvae during their reproductive period in the Mexican Caribbean

Directory of Open Access Journals (Sweden)

José Francisco Chávez Villegas

2012-03-01

Full Text Available El caracol rosa (Strombus gigas, Linnaeus, 1758 es una especie de importancia económica en el Mar Caribe, por lo cual, en la década de 1980 representó la segunda pesquería después de la langosta espinosa, razón por la que actualmente se encuentra en estado de sobrepesca. Con el objetivo de determinar la variación en la abundancia de larvas durante la época reproductiva, cuatro localidades del Caribe Mexicano “CM” (México: Puerto Morelos, Sian Ka’an, Mahahual; Belice: San Pedro fueron muestreadas. Mensualmente, de mayo a octubre del 2008, se realizaron arrastres de plancton en cada localidad empleando una red cónica (300μm. Temperatura (°C, salinidad (ppm y oxígeno disuelto (mg L-1 fueron registrados para cada sitio. Una densidad media larval de 0.34±0.87 larvas•10m-3 fue registrada entre localidades, con un pico de abundancia entre agosto y septiembre (0.82±1.00 y 0.76±1.68 larvas 10m-3, respectivamente. La densidad larval tuvo una correlación del 60% con la salinidad (r=0.6063, p0.05. El 100% de las larvas capturadas corresponden al estadio I definido por Davis et al (1993, mostrando actividad reproductiva local, de esta manera, se considera que los sitios muestreados en el CM son fuente de larvas para la especie S. gigas.Abundance and distribution of Strombus gigas (Mesogastropoda: Strombidae larvae during their reproductive period in the Mexican Caribbean. The Queen Conch (Strombus gigas Linnaeus, 1758 is a species of economic importance in the Caribbean Sea, which, in the 1980’s represented the second fishery after de spiny lobster, reason that is currently in a state of overfishing. In order to determine the larval abundance variation during the reproductive season, four locations of the Mexican Caribbean “MC” (Mexico: Puerto Morelos, Sian Ka’an, Mahahual; Belize: San Pedro were sampled. Monthly, from May to October 2008, planktonic net drags (300μm were carried out at each location. Temperature (�

Natural flexible dermal armor.

Science.gov (United States)

Yang, Wen; Chen, Irene H; Gludovatz, Bernd; Zimmermann, Elizabeth A; Ritchie, Robert O; Meyers, Marc A

2013-01-04

Fish, reptiles, and mammals can possess flexible dermal armor for protection. Here we seek to find the means by which Nature derives its protection by examining the scales from several fish (Atractosteus spatula, Arapaima gigas, Polypterus senegalus, Morone saxatilis, Cyprinius carpio), and osteoderms from armadillos, alligators, and leatherback turtles. Dermal armor has clearly been developed by convergent evolution in these different species. In general, it has a hierarchical structure with collagen fibers joining more rigid units (scales or osteoderms), thereby increasing flexibility without significantly sacrificing strength, in contrast to rigid monolithic mineral composites. These dermal structures are also multifunctional, with hydrodynamic drag (in fish), coloration for camouflage or intraspecies recognition, temperature and fluid regulation being other important functions. The understanding of such flexible dermal armor is important as it may provide a basis for new synthetic, yet bioinspired, armor materials. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Characterization of catalytic efficiency parameters of brain cholinesterases in tropical fish.

Science.gov (United States)

de Assis, Caio Rodrigo Dias; Linhares, Amanda Guedes; Oliveira, Vagne Melo; França, Renata Cristina Penha; Santos, Juliana Ferreira; Marcuschi, Marina; Carvalho, Elba Verônica Matoso Maciel; Bezerra, Ranilson Souza; Carvalho, Luiz Bezerra

2014-12-01

Brain cholinesterases from four fish (Arapaima gigas, Colossoma macropomum, Rachycentron canadum and Oreochromis niloticus) were characterized using specific substrates and selective inhibitors. Parameters of catalytic efficiency such as activation energy (AE), k(cat) and k(cat)/k(m) as well as rate enhancements produced by these enzymes were estimated by a method using crude extracts described here. Despite the BChE-like activity, specific substrate kinetic analysis pointed to the existence of only acetylcholinesterase (AChE) in brain of the species studied. Selective inhibition suggests that C. macropomum brain AChE presents atypical activity regarding its behavior in the presence of selective inhibitors. AE data showed that the enzymes increased the rate of reactions up to 10(12) in relation to the uncatalyzed reactions. Zymograms showed the presence of AChE isoforms with molecular weights ranging from 202 to 299 kDa. Values of k(cat) and k(cat)/k(m) were similar to those found in the literature.

Nilonema gymnarchi Khalil, 1960 and N. senticosum (Baylis, 1922) (Nematoda: Dracunculoidea): Gondwana relicts?

Science.gov (United States)

Santos, Cláudia Portes; Gibson, David I

2007-07-01

Data-base searches of records of the helminth parasites of South American and African freshwater fishes revealed only two pairs of species from genera endemic to the two regions. One pair, species of the primitive amphilinid cestode genus Nesolecithus Dönges & Harder, 1966, has already been designated as likely Gondwana relicts. The second pair are the philometrid nematodes Nilonema gymnarchi Khalil, 1960 from Gymnarchus niloticus Cuvier (Gymnarchidae) in Africa and N. senticosum (Baylis, 1922) from the South American fish Arapaima gigas (Cuvier) (Arapaimidae). Both species are partly redescribed on the basis of light and scanning electron microscopical observations of the type-specimens, and their relationships are discussed. In view of the fact that both hosts are basal teleosts of the order Osteoglossiformes and they are the same two fish which harbour the amphilinid cestodes already indicated as Gondwana relics, the nematode pair is also deemed to be relictual. However, these species are suggested as being of limited potential value for calibrating a molecular clock.

First evidence of a potential antibacterial activity involving a laccase-type enzyme of the phenoloxidase system in Pacific oyster Crassostrea gigas haemocytes.

Science.gov (United States)

Luna-Acosta, Andrea; Saulnier, Denis; Pommier, Mylène; Haffner, Philippe; De Decker, Sophie; Renault, Tristan; Thomas-Guyon, Hélène

2011-12-01

Phenoloxidases (POs) are a group of copper proteins including tyrosinase, catecholase and laccase. In several insects and crustaceans, antibacterial substances are produced through the PO cascade, participating in the direct killing of invading microorganisms. However, although POs are widely recognised as an integral part of the invertebrate immune defence system, experimental evidence is lacking that these properties are conserved in molluscs, and more particularly in the Pacific oyster Crassostrea gigas. In the present study, Vibrio splendidus LGP32 and Vibrio aestuarianus 02/041 growths were affected, after being treated with C. gigas haemocyte lysate supernatant (HLS), and either a common substrate of POs, l-3,4-dihydroxyphenylalanine (L-DOPA), to detect catecholase-type PO activity, or a specific substrate of laccase, p-phenylenediamine (PPD), to detect laccase-type PO activity. Interestingly, a higher bacterial growth inhibition was observed in the presence of PPD than in the presence of L-DOPA. These effects were suppressed when the specific PO inhibitor, phenylthiourea (PTU), was added to the medium. Results of the present study suggest, for the first time in a mollusc species, that antibacterial activities of HLS from C. gigas potentially involve POs, and more particularly laccase catalysed reactions. Copyright © 2011 Elsevier Ltd. All rights reserved.

A biomineralization study of the Indo-Pacific giant clam Tridacna gigas

Science.gov (United States)

Gannon, M. E.; Pérez-Huerta, A.; Aharon, P.; Street, S. C.

2017-06-01

The giant clam, Tridacna gigas, is an important faunal component of reef ecosystems of the Indo-Pacific region. In addition to its ecological role, shells of this bivalve species are useful bioarchives for past climate and environmental reconstructions. However, the biomineralization processes involved in shell aragonite deposition are insufficiently understood. Here, we present a study of the shell microstructure of modern specimens from Palm Island, Great Barrier Reef (GBR), Australia, and Huon Peninsula, Papua New Guinea (PNG), using a combination of petrography, scanning electron microscopy, electron backscatter diffraction, Raman spectroscopy and stable carbon isotope ratios. Daily growth increments were recognizable in all specimens through ontogeny, and counting these growth lines provides a robust specimen age estimate. For the internal layers, paired increments of organized aragonitic needles and compact, oblong crystals were recognized in a specimen from PNG, whereas specimens from GBR were composed of shield-like crystals that were not definable at the microscale. The combination of nutrient availability, rainfall and solar irradiance are likely to be the most significant factors controlling shell growth and may explain the observed differences in microstructure. The external layer, identical in all specimens, was composed of dendritic microstructure that is significantly enriched in 13C compared to the internal layer, suggesting different metabolic controls on layer deposition. We propose that the mineralization of the internal and external layers is independent from each other and associated with the activity of specific mantles. Future studies using T. gigas shells as bioarchives should consider the microstructure as it reflects the environment in which the individual lived and the differences in mineralization pathways of internal and external layers.

Episodic human activities and seasonal impacts on the Tachypleus gigas (Muller, 1785) population at Tanjung Selangor in Peninsular Malaysia

Digital Repository Service at National Institute of Oceanography (India)

Nelson, B.R.; Satyanarayan, B.; Zhong, J.M.H.; Shaharome, F.; Sukumaran, M.; Chatterji, A.

absence during 2011 (PRIMER v.6) Since Tanjung Selangor beach (adjoining the Terus and Pahang Tua estuary) is one of the very few known spawning grounds for the Malaysian horseshoe crab (T gigas), it is imperative to conserve and manage this area...

Rising water temperatures, reproduction and recruitment of an invasive oyster, Crassostrea gigas, on the French Atlantic coast.

Science.gov (United States)

Dutertre, Mickaël; Beninger, Peter G; Barillé, Laurent; Papin, Mathias; Haure, Joël

2010-02-01

The recent appearance and invasion of feral oysters (Crassostrea gigas) along the northern European Atlantic coast, underscores the necessity to investigate the relationship between environmental variables, reproductive physiology, larval development and recruitment. We studied these relationships at both high (HT) and intermediate (IT) - turbidity sites, through historical data on water temperatures, multi-parameter environmental probes, histological analyses, and field collections of planktonic larvae and settled post-larvae in 2005 and 2006. A progressive warming trend was observed, especially since 1995, when oyster proliferation first became severe. Threshold temperatures for oocyte growth, larval development and settlement were achieved in both 2005 and 2006. The HT site showed greater numbers of larvae and post-larvae than the IT site for both years, with the highest numbers of post-larvae observed at both sites during the warmer summer of 2006. These results suggest that increased temperatures in northern European waters allow successful reproduction, larval development, and recruitment of C. gigas. High turbidity conditions further enhance this success. 2009 Elsevier Ltd. All rights reserved.

Size increment of jumbo flying squid Dosidicus gigas mature females in Peruvian waters, 1989-2004

Science.gov (United States)

Argüelles, Juan; Tafur, Ricardo; Taipe, Anatolio; Villegas, Piero; Keyl, Friedeman; Dominguez, Noel; Salazar, Martín

2008-10-01

Changes in population structure of the jumbo flying squid Dosidicus gigas in Peruvian waters were studied based on size-at-maturity from 1989 to 2004. From 1989 to 1999, mature squid belonging to the medium-sized group prevailed, but from 2001 on, mature squids were larger. This change is not related to the changes in sea surface temperature and we hypothesized that it was caused by the population increase of mesopelagic fishes as prey.

Trophic relationships between the jumbo squid (Dosidicus gigas and the lightfish (Vinciguerria lucetia in the Humboldt Current System off Peru

Directory of Open Access Journals (Sweden)

Rigoberto Rosas-Luis

2011-04-01

Full Text Available Acoustic surveys for assessing the biomass and distribution of the jumbo squid (Dosidicus gigas and the lightfish (Vinciguerria lucetia were carried out in the Humboldt Current System of Peru in 2007 and 2008. At the same time, 937 jumbo squid were caught and their stomach contents analyzed. The diet of the jumbo squid was dominated by mesopelagic fish. The first component of their fish diet was V. lucetia and the second component was the myctophid fish Diogenichthys laternatus. Acoustic biomass estimates of these species show that V. lucetia is an important component in aggregative structures in the Humboldt Current System of Peru and its distribution and movements are closely related to the migratory movements of the jumbo squid. The trophic relationship observed between D. gigas and V. lucetia promotes an increase in jumbo squid biomass and, has a positive trophic effect on the ocean ecosystem.

Patterns of commercial fish landings in the Loreto region (Peruvian Amazon) between 1984 and 2006.

Science.gov (United States)

Garcia, Aurea; Tello, Salvador; Vargas, Gladis; Duponchelle, Fabrice

2009-03-01

Patterns of commercial fish catches over the period from 1984 to 2006 were studied in the Loreto region and in Iquitos, which is the most important town of the region and the principal fish marketplace of the Peruvian Amazon. Despite important inter-annual variations, the overall fish landings have significantly increased in the region during this period. The same three species dominated the catches during the whole period (Prochilodus nigricans, Potamorhina altamazonica and Psectrogaster amazonica), making up about 62% of the catches. However, the number of species exploited by commercial fisheries increased considerably during the 22 years of this study (from about 21 species in 1984 to over 65 in 2006), although part of the difference may be accounted for by a better identification of individual species nowadays. At the same time, the large high-valued species, such as Arapaima gigas, Colossoma macropomum and Brachyplatystoma rousseauxii, declined significantly and were replaced by smaller, short-lived and lower-valued species. Catches of the silver Arahuana (Osteoglossum bicirrhosum) also declined significantly during the studied period, strengthening recent warnings about the species' conservation status (Moreau and Coomes, Oryx 40:152-160, 2006). The relative proportions of the trophic groups (detritivores, omnivores and piscivores) remained relatively constant over the study period, but there were significant changes in the relative abundances of the species groups. The proportion of the dominant group, the Characiformes, which averaged about 81% of the catches, increased between 1984 and 2006, whereas the proportion of the Siluriformes and Perciformes remained constant. On the other hand, the proportion of Osteoglossiformes, represented only by two well known species (Arapaima gigas and Osteoglossum bicirrhosum), declined sharply during the same period. Important differences were observed between the landings of Iquitos and the landing of the whole Loreto

The final spawning ground of Tachypleus gigas (Muller, 1785) on the east Peninsular Malaysia is at risk: A call for action.

Digital Repository Service at National Institute of Oceanography (India)

Nelson, B.R.; Satyanarayan, B.; Moh, J.H.Z.; Ikhwanuddin, M.; Chatterji, A.; Shaharom, F.

Tanjung Selongor and Pantai Balok (State Pahang) are the only two places known for spawning activity of the Malaysian horseshoe crab - Tachypleus gigas (Muller, 1785) on the east coast of Peninsular Malaysia. While the former beach has been...

The final spawning ground of Tachypleus gigas (Müller, 1785) on the east Peninsular Malaysia is at risk: a call for action.

Science.gov (United States)

Nelson, Bryan Raveen; Satyanarayana, Behara; Moh, Julia Hwei Zhong; Ikhwanuddin, Mhd; Chatterji, Anil; Shaharom, Faizah

2016-01-01

Tanjung Selongor and Pantai Balok (State Pahang) are the only two places known for spawning activity of the Malaysian horseshoe crab - Tachypleus gigas (Müller, 1785) on the east coast of Peninsular Malaysia. While the former beach has been disturbed by several anthropogenic activities that ultimately brought an end to the spawning activity of T. gigas, the status of the latter remains uncertain. In the present study, the spawning behavior of T. gigas at Pantai Balok (Sites I-III) was observed over a period of thirty six months, in three phases, between 2009 and 2013. Every year, the crab's nesting activity was found to be high during Southwest monsoon (May-September) followed by Northeast (November-March) and Inter monsoon (April and October) periods. In the meantime, the number of female T. gigas in 2009-2010 (Phase-1) was higher (38 crabs) than in 2010-2011 (Phase-2: 7 crabs) and 2012-2013 (Phase-3: 9 crabs) for which both increased overexploitation (for edible and fishmeal preparations) as well as anthropogenic disturbances in the vicinity (sand mining since 2009, land reclamation for wave breaker/parking lot constructions in 2011 and fishing jetty construction in 2013) are responsible. In this context, the physical infrastructure developments have altered the sediment close to nesting sites to be dominated by fine sand (2.5Xφ ) with moderately-well sorted (0.6-0.7σφ), very-coarse skewed (-2.4SKφ), and extremely leptokurtic (12.6Kφ) properties. Also, increased concentrations of Cadmium (from 4.2 to 13.6 mg kg(-1)) and Selenium (from 11.5 to 23.3 mg kg(-1)) in the sediment, and Sulphide (from 21 to 28 µg l(-1)) in the water were observed. In relation to the monsoonal changes affecting sheltered beach topography and sediment flux, the spawning crabs have shown a seasonal nest shifting behaviour in-between Sites I-III during 2009-2011. However, in 2012-2013, the crabs were mostly restricted to the areas (i.e., Sites I and II) with high oxygen (5.5-8.0 mg l

The final spawning ground of Tachypleus gigas (Müller, 1785 on the east Peninsular Malaysia is at risk: a call for action

Directory of Open Access Journals (Sweden)

Bryan Raveen Nelson

2016-07-01

Full Text Available Tanjung Selongor and Pantai Balok (State Pahang are the only two places known for spawning activity of the Malaysian horseshoe crab - Tachypleus gigas (Müller, 1785 on the east coast of Peninsular Malaysia. While the former beach has been disturbed by several anthropogenic activities that ultimately brought an end to the spawning activity of T. gigas, the status of the latter remains uncertain. In the present study, the spawning behavior of T. gigas at Pantai Balok (Sites I-III was observed over a period of thirty six months, in three phases, between 2009 and 2013. Every year, the crab’s nesting activity was found to be high during Southwest monsoon (May–September followed by Northeast (November–March and Inter monsoon (April and October periods. In the meantime, the number of female T. gigas in 2009–2010 (Phase-1 was higher (38 crabs than in 2010–2011 (Phase-2: 7 crabs and 2012–2013 (Phase-3: 9 crabs for which both increased overexploitation (for edible and fishmeal preparations as well as anthropogenic disturbances in the vicinity (sand mining since 2009, land reclamation for wave breaker/parking lot constructions in 2011 and fishing jetty construction in 2013 are responsible. In this context, the physical infrastructure developments have altered the sediment close to nesting sites to be dominated by fine sand (2.5Xφ with moderately-well sorted (0.6–0.7σφ, very-coarse skewed (−2.4SKφ, and extremely leptokurtic (12.6Kφ properties. Also, increased concentrations of Cadmium (from 4.2 to 13.6 mg kg−1 and Selenium (from 11.5 to 23.3 mg kg−1 in the sediment, and Sulphide (from 21 to 28 µg l−1 in the water were observed. In relation to the monsoonal changes affecting sheltered beach topography and sediment flux, the spawning crabs have shown a seasonal nest shifting behaviour in-between Sites I-III during 2009–2011. However, in 2012–2013, the crabs were mostly restricted to the areas (i.e., Sites I and II with high

Crecimiento del ostión Crassostrea gigas (Thunberg, 1795 cultivado en el estero La Piedra, Sinaloa, México

Directory of Open Access Journals (Sweden)

A. M. Góngora-Gómez

2012-01-01

Full Text Available Se realizó un ciclo de engorda (noviembre 2004- mayo 2005 con el ostión Crassostrea gigas en el estero La Piedra, Guasave (Sinaloa, México, usando canastas suspendidas en una línea madre para evaluar su crecimiento y supervivencia. Se utilizaron 10,000 semillas (3.5 ± 0.5 mm de altura inicial. Los valores promedios de los parámetros del agua fueron: temperatura, 22.2 ± 3.2°C; oxígeno disuelto, 6.8 ± 2.3 mg/l; y salinidad, 32.8 ± 3.14 ups; mientras que el promedio de la concentración de clorofila a fue de 3.2 ± 0.8 mg/m3. Los animales mostraron un crecimiento de 0.26 mm/día para la altura de su concha y 0.42 g/día de peso corporal. El índice de condición mostró un ligero descenso en el último mes de cultivo de 9.54 a 8.68. La fórmula: Peso = -15.4352 + 0.7968 Altura (r2 = 88.29; = 12.88; F = 37,71; P = 0.0017 describe la relación entre el peso y la altura de C. gigas en el cultivo. Se obtuvieron diferencias significativas entre el peso e índice de condición (P = 0.0023. Se registró una mortalidad total de 12%. Los resultados obtenidos indican que la temporada otoño-pri-mavera es favorable para el cultivo del ostión del Pacífico C. gigas en el estero La Piedra, Guasave, Sinaloa, ya que alcanzó la talla comercial (109.8 mm y 88.7 g en siete meses de cultivo.

Status of the Pacific Oyster Crassostrea gigas (Thunberg, 1793) in the western Limfjord, Denmark – Five years of population development

DEFF Research Database (Denmark)

Groslier, Tilde; Christensen, Helle Torp; Davids, Jens

2014-01-01

The Pacific oyster, Crassostrea gigas, was introduced into the Netherlands in 1964 for aquaculture purposes and has since spread extensively in Northern European waters. Eight locations in the western part of the Limfjord, Denmark, first sampled in 2006 were revisited in 2011, to determine how...

Utilisation des protozoaires ciliés (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas pour l'épuration bactériologique des eaux polluées en microcosme

Directory of Open Access Journals (Sweden)

Nguedji, JBT.

2003-01-01

Full Text Available An Microcosm Use of Ciliate Protozoa (Paramecium africanum, Colpidium uncinatum, Neobursaridium gigas for Bacterial Purification of Polluted Water. Tests on the grazing of ciliated protozoa Paramecium africanum, Colpidium uncinatum and Neobursaridium gigas on the bacteria Escherichia coli and Staphylococcus sp. were carried out in an microcosm aquatic environment. These tests aimed at assessment of the role of these predators protozoa in the bacterial purification of polluted water. The evolution of the feeding kinetics of these protozoa shows a phase of adaptation of the predator to the prey, with a slow feeding rate and a phase of accelerate of feeding. The two phases are separated by a short period of recognition. The polynomial functions of the kinetics of predation show that C. uncinatum and P. africanum graze faster on E. coli than on Staphylococcus sp., meanwhile N. gigas feeds slowly on E. coli than on Staphylococcus sp. The time of contact between the ciliated protozoa and the bacteria, the predatory protozoa specie and the specie of the bacteria, should be considered simultaneously when evaluating the variation of bacterial concentrations in aquatic environment being purified.

Oocyte maturation and origin of the germline as revealed by the expression of Nanos-like in the Pacific oyster Crassostrea gigas.

Science.gov (United States)

Xu, Rui; Li, Qi; Yu, Hong; Kong, Lingfeng

2018-04-13

Nanos gene plays an important role in germline development in animals. However, the molecular mechanisms involved in germline development in Mollusca, the second largest animal phylum, are still poorly understood. Here we identified the Nanos orthologue from the Pacific oyster Crassostrea gigas (Cg-Nanos-like), and investigated the expression patterns of Nanos during gametogenesis and embryogenesis in C. gigas. Tissue expression analysis showed that Cg-Nanos-like was specifically expressed in female gonads. During the reproductive cycle, the expression of Cg-Nanos-like mRNA increased matching the seasonal development of the ovarian tissues in diploids, while the expression levels were significantly lower in the ovaries of sterile triploids compared to diploids. High expression of Cg-Nanos-like transcripts were detected in early embryonic stages, while the expression significantly dropped at gastrulation and was barely detectable in veliger stages. In situ hybridization showed that Cg-Nanos-like was expressed at different stages of developing oocytes, whereas positive signals were detected only in spermatogonia during the spermatogenic cycle. These findings indicated that Cg-Nanos-like was involved in the development of germ cells, and maintenance of oocyte maturation. In early embryogenesis, the transcripts were broadly expressed; following gastrulation, the expression was restricted to two cell clumps, which might be the putative primordial germ cells (PGCs) or their precursors. Based on the results, the formation of the PGCs in C. gigas was consistent with the model of transition from epigenesis to preformation. Copyright © 2017. Published by Elsevier B.V.

Essais de decontamination des huitres Crassostrea gigas en bassin par renouvellement et circulation de l''eau

OpenAIRE

Faury, Nicole; Masson, Daniel; Ratiskol, Jacqueline

1992-01-01

The germs decreasing of artificially contaminated oysters Crassostrea gigas has been studied in experimental tanks similar to a shellfish depuration plant, without any chemical or physical water treatment. The oyster were treated by three different water management pattern, compared to a control tank and the germs decreasing studied by MPN method of fecal Coliforms and Streptococus. As a result: 1) it appaears somewhat difficult to conclude in this first attempt about the most efficient treat...

Coexistence of Pacific oyster Crassostrea gigas (Thunberg, 1793) and blue mussels Mytilus edulis Linnaeus, 1758 on a sheltered intertidal bivalve bed?

DEFF Research Database (Denmark)

Holm, M.W.; Davids, J.K.; Dolmer, Per

2016-01-01

The invasive Pacific oyster, Crassostrea gigas Thunberg, 1793 was introduced in Denmark for aquaculture in the 1970s. Presently, feral populations are found in many parts of the country, with the largest populations established on existing beds of blue mussel, Mytilus edulis Linnaeus, 1758...

The TDCPix ASIC: Tracking for the NA62 GigaTracker

CERN Document Server

Noy, Matthew; Bonacini, Sandro; Kaplon, Jan; Kluge, Alexander; Morel, Michel; Perktold, Lukas; Poltorak, Karolina

2014-01-01

The TDCPix is a hybrid pixel detector readout ASIC designed for the NA62 GigaTracker detec- tor. The asynchronously operating pixel array consists of 1800 pixels, each 300x300 m m 2 . The requirements are a single-hit timing resolution better than 200 ps RMS and a read-out efficiency of 99% or better in the presence of a beam rate between 800 MHz and 1 GHz . The discrimina- tor time walk effect is compensated by time-over-threshold discriminators connected to an array of 360 dual TDC channels. The TDCpix processes up to 210 Mhits = s and provides the hit data without the need of a trigger in a continuous data stream via four 3.2 Gb = s serialisers. Under test since January 2014, the TDCPix chip is fully functional and shows excellent performance.

Giga-bit optical data transmission module for Beam Instrumentation

CERN Document Server

Roedne, L T; Cenkeramaddi, L R; Jiao, L

Particle accelerators require electronic instrumentation for diagnostic, assessment and monitoring during operation of the transferring and circulating beams. A sensor located near the beam provides an electrical signal related to the observable quantity of interest. The front-end electronics provides analog-to-digital conversion of the quantity being observed and the generated data are to be transferred to the external digital back-end for data processing, and to display to the operators and logging. This research project investigates the feasibility of radiation-tolerant giga-bit data transmission over optic fibre for beam instrumentation applications, starting from the assessment of the state of the art technology, identification of challenges and proposal of a system level solution, which should be validated with a PCB design in an experimental setup. Radiation tolerance of 10 kGy (Si) Total Ionizing Dose (TID) over 10 years of operation, Bit Error Rate (BER) 10-6 or better. The findings and results of th...

Feeding current characteristics of three morphologically different bivalve suspension feeders, Crassostrea gigas, Mytilus edulis and Cerastoderma edule, in relation to food competition

NARCIS (Netherlands)

Troost, K.; Stamhuis, E.J.; van Duren, L.A; Wolff, W.J.

Introduced Pacific oysters (Crassostrea gigas) have shown rapid expansion in the Oosterschelde estuary, while stocks of native bivalves declined slightly or remained stable. This indicates that they might have an advantage over native bivalve filter feeders. Hence, at the scale of individual

Feeding current characteristics of three morphologically different bivalve suspension feeders, Crassostrea gigas Mytilus edulis and Cerastoderma edule , in relation to food competition

NARCIS (Netherlands)

Troost, K.; Stamhuis, E.J.; Duren, L.A.; Wolff, W.

2009-01-01

Introduced Pacific oysters (Crassostrea gigas) have shown rapid expansion in the Oosterschelde estuary, while stocks of native bivalves declined slightly or remained stable. This indicates that they might have an advantage over native bivalve filter feeders. Hence, at the scale of individual

Induction of gynogenetic haploidy in oyster Crassostrea gigas, using ultra violet irradiated sperms

Energy Technology Data Exchange (ETDEWEB)

Goswami, Usha [National Inst. of Oceanography, Panaji (India)

1993-06-01

Eggs of Crassostrea gigas were fertilized with sperms exposed to different doses of UV irradiations by keeping a constant rate of 121.47 ergs.mm[sup -2]sec[sup -1] and changing the period of exposure from 4 to 90 sec. Samples of larvae were analysed for chromosomal ploidy, rate of fertilization, developmental and chromosomal abnormalities. The gynogenetic haploid larvae first made their appearance in the 30 and 50 sec group exposed to 3644 and 6074 ergs mm[sup -2] UV. The maximum number was found in the 90 sec group exposed to 10932 ergs mm[sup -2] UV. (author). 11 refs., 1 tab., 1 fig.

Prevalencia del protozoario Perkinsus sp. en un cultivo de ostión japonés Crassostrea gigas en Sinaloa, México

Directory of Open Access Journals (Sweden)

Lizeth Carolina Villanueva-Fonseca

2013-11-01

Full Text Available Crassostrea gigas es un molusco bivalvo de gran importancia comercial. En el noroeste de México su producción es afectada por mortalidades cuyo origen infeccioso no ha sido determinado claramente. En este trabajo se determinó la prevalencia e intensidad de la infección por Perkinsus sp. en un cultivo de C. gigas en el ciclo 2011-2012. El cultivo se hizo en un sistema de línea suspendida con densidades de 28 y 42 ostiones/canasta y se determinó un tamaño de muestra de 30 ostiones por mes. La detección de Perkinsus sp. se hizo de acuerdo a los protocolos de la Organización Mundial de Sanidad Animal (OIE para Medio Fluido de Tioglicolato y PCR. Con ambos métodos se determinó la prevalencia de Perkinsus sp., que varió entre 3,3 y 40%. La intensidad de la infección estuvo en niveles 1 y 2, de acuerdo a la escala de Mackin. La mortalidad acumulativa en las densidades de 28 y 42 ostiones por canasta fue del 4 y 6%, respectivamente. Las mayores mortalidades del ostión y las mayores prevalencias de Perkinsus sp. ocurrieron en septiembre (2,7 y 16,6% y octubre (1,5 y 23,3%, respectivamente, cuando la temperatura fue alta. En conclusión, Perkinsus sp. fue detectado en un cultivo de C. gigas en el estero La Pitahaya con prevalencia moderada, baja intensidad de infección y mayor presencia en los meses más calurosos del ciclo de cultivo.

Les phénoloxydases chez l’huître creuse Crassostrea gigas : biomarqueurs potentiels de stress environnemental

OpenAIRE

Luna Acosta , Andrea

2010-01-01

The Pacific oyster Crassostrea gigas is the leading aquaculture product at the worldwide level. However, massive summer mortalities affect dramatically cultivated and natural oyster populations, especially at young life stages. These events could be linked to an unbalance between the different actors of the triad host – pathogen agent – environment, which could favour a weakening of defence mechanisms in the host, and consequently, the emergence and/or increase of diseases. Among environmenta...

The floating forest: traditional knowledge and use of matupá vegetation islands by riverine peoples of the central Amazon.

Science.gov (United States)

de Freitas, Carolina T; Shepard, Glenn H; Piedade, Maria T F

2015-01-01

Matupás are floating vegetation islands found in floodplain lakes of the central Brazilian Amazon. They form initially from the agglomeration of aquatic vegetation, and through time can accumulate a substrate of organic matter sufficient to grow forest patches of several hectares in area and up to 12 m in height. There is little published information on matupás despite their singular characteristics and importance to local fauna and people. In this study we document the traditional ecological knowledge of riverine populations who live near and interact with matupás. We expected that their knowledge, acquired through long term observations and use in different stages of the matupá life cycle, could help clarify various aspects about the ecology and natural history of these islands that field biologists may not have had the opportunity to observe. Research was carried out in five riverine communities of the Amanã Sustainable Development Reserve (Brazil). Semi-structured interviews were conducted with 45 inhabitants in order to register local understandings of how matupás are formed, biotic/abiotic factors related to their occurrence, the plants and animals that occur on them, their ecological relevance, and local uses. Local people elucidated several little-known aspects about matupá ecology, especially regarding the importance of seasonal dynamics of high/low water for matupás formation and the relevance of these islands for fish populations. Soil from matupás is especially fertile and is frequently gathered for use in vegetable gardens. In some cases, crops are planted directly onto matupás, representing an incipient agricultural experiment that was previously undocumented in the Amazon. Matupás are also considered a strategic habitat for fishing, mainly for arapaima (Arapaima gigas). The systematic study of traditional ecological knowledge proved to be an important tool for understanding this little-known Amazonian landscape.

Evaluation of Giga-bit Ethernet instrumentation for SalSA electronics readout

International Nuclear Information System (INIS)

Varner, Gary S.; Murakami, Laine; Ridley, David; Zhu Chaopin; Gorham, Peter

2005-01-01

An instrumentation prototype for acquiring high-speed transient data from an array of high bandwidth antennas is presented. Multi-kilometer cable runs complicate acquisition of such large bandwidth radio signals from an extensive antenna array. Solutions using analog fiber optic links are being explored though are very expensive. We propose an inexpensive solution that allows for individual operation of each antenna element, operating at potentially high local self-trigger rates. Digitized data packets are transmitted to the surface via commercially available Giga-bit Ethernet hardware. Events are then reconstructed on a computer farm by sorting the received packets using standard networking gear, eliminating the need for custom, very high speed trigger hardware. Such a system is completely scalable and leverages the enormous capital investment made by the telecommunications industry. Test results from a demonstration prototype are presented

Identification two novel nacrein-like proteins involved in the shell formation of the Pacific oyster Crassostrea gigas.

Science.gov (United States)

Song, Xiaorui; Wang, Xiaotong; Li, Li; Zhang, Guofan

2014-07-01

Nacrein-like proteins have carbonic anhydrase (CA)-like domains, but their coding regions are flanked by inserted repeat sequence, such as Gly-X-Asn. Reportedly, nacrein-like proteins show the highest similarity to human carbonic anhydrase 1(α-CA1), possess CA catalytic functions, and play a key role in shell biomineralization. In the present study, two novel nacrein-like proteins were firstly identified from the shell-forming mantle of the Pacific oyster Crassostrea gigas. With numerous analyses, it was identified and characterized that both the nacrein-like proteins F1 and F2 were secreted and most closely related to the nacrein-like protein of California mussel Mytilus californianus via phylogenetic analysis. RT-PCR analysis showed that the nacrein-like proteins F1 and F2 were expressed in multiple tissues and the expression levels remarkably rose after entering the spat stage, which were basically consistent with the increase of calcite fractions in the total shell volume. Surprisingly, the Gly-X-Asn repeat domain, which is distinctive in most nacrein-like proteins, was absent in the two newly identified nacrein-like proteins in C. gigas and replaced with a series of acidic amino acids (D/E). Regardless, nacrein-like proteins in mollusks seem to be vital to the deposition of calcium carbonate and likely perform diverse functions.

High pressure treatment changes spoilage characteristics and shelf life of Pacific oysters ( Crassostrea gigas) during refrigerated storage

Science.gov (United States)

Cao, Rong; Zhao, Ling; Liu, Qi

2017-04-01

The effects of high pressure (HP) treatment on spoilage characteristic and shelf life extension of Pacific oysters ( Crassostrea gigas) during refrigerated storage were studied. Results showed that HP treatment of 275 MPa for 3 min or 300 MPa for 2 min could achieve 100% full release of oyster adductor muscle, pressures higher than 350 MPa caused excessive release as the shells of oysters were broken, thus use of higher pressures should be cautious in oyster processing industry because of its adverse impact on the appearance of shells. HP treatment (300 MPa, 2 min) was proper for the shucking of Pacific oyster ( Crassostrea gigas) in China. This treatment caused no organoleptic disadvantage. Moreover, HP treatment resulted in obvious differences in biochemical spoilage indicators (pH, TVB-N and TBARS) changes and volatile compounds profile determined by electronic nose during storage. HP treatment (300 MPa, 2 min) also led to a reduction of aerobic bacterial count (APC) by 1.27 log cycles. Furthermore, the APC values of oysters treated by HP were always lower than those of the control samples during storage. Based on the organoleptic, biochemical and microbiological indicators, shelf life of 6-8 d for control and 12 d for HP-treated oysters could be expected. HP treatment showed great potential in oyster processing and preservation.

Ostreid herpesvirus OsHV-1 μVar in Pacific oysters Crassostrea gigas (Thunberg 1793) of the Wadden Sea, a UNESCO world heritage site

NARCIS (Netherlands)

Gittenberger, A.; Voorbergen-Laarman, M.A.; Engelsma, M.Y.

2016-01-01

The Wadden Sea is an extensive wetland area, recognized as UNESCO world heritage site of international importance. Since the mid-1990s, the invasive Pacific oyster Crassostrea gigas (Thunberg 1793) population in the area has grown exponentially, having a distinct impact on the ecosystem. The

Evolution and functional analysis of the Pif97 gene of the Pacific oyster Crassostrea gigas

Directory of Open Access Journals (Sweden)

Xiaotong WANG, Xiaorui SONG, Tong WANG, Qihui ZHU, Guoying MIAO, Yuanxin CHEN, Xiaodong FANG, Huayong QUE, Li LI, Guofan ZHANG

2013-02-01

Full Text Available Mollusc shell matrix proteins (SMPs are important functional components embedded in the shell and play a role in shell formation. A SMP (Pif177 was identified previously from the nacreous layer of the Japanese pearl oyster Pinctada fucata, and its cleavage products (named pfPif97 and pfPif80 proteins were found to bind to the chitin framework and induce aragonite crystal formation and orient the c axis. In this study, a homologue of pfPif177 was cloned from the mantle of the Pacific oyster Crassostrea gigas, containing the homologue of pfPif97 only and not pfPif80. This finding hints at the large divergence in gene structure between the two species. This homologue (cgPif97 shares characteristics with pfPif97, and suggests that the biological functions of these two proteins may be similar. The expression pattern of cgPif97 in different tissues and development stages indicates that it may play an important role in shell formation of the adult oyster. The morphology of the inner shell surface was affected by injected siRNA of cgPif97 and the calcite laths of the shell became thinner and narrower when the siRNA dose increased, suggesting that the cgPif97 gene plays an important role in calcite shell formation in C. gigas. In conclusion, we found evidence that the Pif177 gene evolved very fast but still retains a similar function among species [Current Zoology 59 (1: 109–115, 2013].

Effets des sels organiques de tributyletain sur l'huître adulte Crassostrea gigas

OpenAIRE

Heral, Maurice; Alzieu, Claude; Caux, O.; Razet, Daniel; Garnier, Jacqueline

1983-01-01

La toxicité des composés organostanniques a été mise en évidence à l'égard de l'huître Crassostrea gigas tant aux stades larvaires (His & Robert, 1980) que chez l'adulte (Alzieu & al., 1980, 1981). Parallèlement ces mêmes auteurs ont montré l'accumulation d'étain dans les huîtres contaminées expérimentalement ainsi que le rôle que peut jouer le fluorure de TBT dans la perturbation de la croissance (Héral & al. 1981) et dans la malformation de la coquille des huîtres (Alzieu & al., 1981). Dans...

Development of the ultrasonic fatigue testing machine due to study on giga-cycle fatigue at elevated temperature. 2001 annual report. Document on collaborative study

International Nuclear Information System (INIS)

Hattori, Shuji; Itoh, Takamoto

2002-03-01

An ultrasonic fatigue testing machine was developed to obtain the giga-cycle fatigue life at elevated temperature for safety and reliability of structural components in the faster breeder reactor (FBR). This testing machine consists of an amplifier, booster, horn and the equipments such as a system controller and data acquisition. The test specimen is attached at the end of the horn. The electric power generated in the amplifier is transformed into the mechanical vibration in the converter and is magnified in the booster and horn. The vibration was enough to fatigue the specimen. Since the test frequency is set at a resonant frequency, the shape and dimensions of specimen were designed so as to vibrate itself resonantly. However, the maximum amplitudes of stress and strain in the specimen can be calculated easily by measuring the amplitude of displacement at the end of the specimen. The developed ultrasonic fatigue testing machine enables to carry out the fatigue tests at 20 kHz so that it can perform the giga-cycle fatigue test within a very short time as compared with the regular fatigue testing machines such as a hydraulic fatigue testing machine. By clarifying the material strength characteristics in giga-cycle region, the life evaluation, design and examination of components will be more suitable than ever. This study will contribute to improve the safety and reliability of components in FBR. In this technical report, the specification and characteristics of the testing machine were described along with the several experimental results. (author)

Shell Lip Thickness Is the Most Reliable Proxy to Sexual Maturity in Queen Conch (Lobatus gigas of Port Honduras Marine Reserve, Belize; Informing Management to Reduce the Risk of Growth Overfishing

Directory of Open Access Journals (Sweden)

James R. Foley

2017-06-01

Full Text Available Queen conch (Lobatus gigas is an important food source and export product for Belize, where extraction is regulated by shell length (SL and market clean weight (MCW limits. However, lip thickness (LT limits are used to manage juvenile mortality and reduce risk of growth overfishing in other countries. Empirical studies suggest relationships between LT and sexual maturity vary spatially and need to be determined locally. This study was conducted to determine the most reliable, easily measurable proxy indicator(s of maturity and associated target size limits in L. gigas that can effectively restrict harvest of juveniles. Morphological measures (SL, LT, lip width, unprocessed meat weight, MCW, operculum dimensions, gonadosomatic index (GSI and histological evaluations were recorded from L. gigas collected in PHMR before, during, and after the L. gigas closed season. Upon determining Period 2 (during closed season as the peak reproductive period, relationships between these variables in Period 2 were examined. No relationship was found in males between SL and maturity, and was weak in females, whereas there were significant curvilinear relationships between LT and GSI for both sexes, suggesting urgent need to base size limits on LT not SL. LT at which 50% of the population was mature (LT50 was 15.51 mm for females and 12.33 mm for males, therefore a 16 mm LT limit is recommended. MCW of female L. gigas was also significantly related to GSI, indicating MCW may be an appropriate management tool in conjunction with LT as it can be measured at landing sites whereas shells are usually discarded at sea. However, MCW at which 50% of females were mature (MCW50 was 199 g and many individuals exceeding LT50 had MCW <199 g, suggesting the current 85 g MCW limit is too low to protect juveniles yet 199 g MCW limit would be too high to substitute the recommended LT limit at landing sites. To minimize short-term impacts yet maximize long-term benefits to fishers

Treatment of shrimp effluent by sedimentation and oyster filtration using Crassostrea gigas and C. rhizophorae

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Roberto Ramos

2009-06-01

Full Text Available Efficiency in removing particulate matter from Litopenaeus vannamei shrimp culture effluent was assessed in laboratory scale employing sedimentation and oysters Crassostrea gigas and C. rhizophorae filtration processes. Cylindroconical tanks (100 L were used in duplicate for sedimentation and 50-L in triplicate for oyster filtration. Fifteen oysters of each species weighing 76-80 g were stocked in each of the filtration treatment experimental units (biomass of 1065 - 1174 g oyster per unit. The control treatment was a tank similar to those used in the filtration treatment but with empty oyster shells. Hydraulic retention time of the effluent was of 6 hours in each treatment. First, effluent went through sedimentation, and then the supernatant went through the filtration tanks. Temperature, pH, dissolved oxygen, salinity, turbidity, total suspended solids, total volatile solids, chlorophyll a and BOD5 were evaluated. During sedimentation and filtration, temperature, pH, salinity and dissolved oxygen concentration remained stable. Sedimentation removed 18, 5.6, 27.5, 45.40 and 23.2% of turbidity, total suspended solids, total volatile solids, chlorophyll a and BOD5, respectively. Chlorophyll a and BOD5 after sedimentation presented significant difference (PEm escala laboratorial, foi comparada a eficiência de remoção de material particulado presente no efluente do cultivo de camarão branco Litopenaeus vannamei, mediante o processo de sedimentação e filtração com ostra nativa Crassostrea rhizophorae e com ostra do pacifico Crassostrea gigas. No processo de sedimentação foram empregados tanques cilindro cônico, em duplicata, de cor preta com 100 L de capacidade total. Para o processo de filtração foram empregados tanques cilindro cônicos, em triplicata, de cor preta de 50 L de volume total. No tratamento de filtração cada unidade experimental foi estocada com 15 indivíduos de ostras de ambas as espécies, com peso médio entre 76

Revision of the camel spider genus Eremocosta Roewer and a description of the female Eremocosta gigas Roewer (Arachnida, Solifugae).

Science.gov (United States)

Cushing, Paula E; Channiago, Felix; Brookhart, Jack O

2018-03-29

A recent phylogenetic analysis demonstrated that the solifuge genus Eremocosta (Eremobatidae), although not monophyletic, formed a strongly supported group, rendered paraphyletic by the exclusion of E. acuitlapanensis, which we herein determine is misplaced in this genus. We revise the taxonomy of the genus Eremocosta. Nine species of the 13 currently placed in the genus are retained, E. bajaensis (Muma 1986), E. calexicensis (Muma 1951), E. formidabilus (Simon 1879), E. gigas Roewer 1934, E. gigasella (Muma 1970), E. spinipalpis (Kraepelin 1899), E. striata (Putnam 1883), and E. titania (Muma 1951). Eremocosta fusca (Muma 1986) and E. montezuma (Roewer 1934) are returned to the genus Eremorhax along with E. arenarum. Eremocosta hystrix and Eremocosta acuitlapanensis (Vázquez Gaviño-Rojas 2000) are transferred to Eremobates. We re-evaluated E. nigrimana (Pocock 1895) and determined that, since the type shows the ventrodistal concavity (VDC) diagnostic for the genus Eremocosta, it should be retained in that genus; however, because the type locality is identified as Afghanistan, far outside the range of any Eremobatidae, its status and placement remain uncertain. Eremocosta robusta (Roewer 1934) was designated nomen dubium by Muma and we maintain this designation. We provide a key to the species of Eremocosta and provide a description of the female of E. gigas.

Reactive oxygen species in unstimulated hemocytes of the pacific oyster Crassostrea gigas: a mitochondrial involvement.

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Ludovic Donaghy

Full Text Available The Pacific oyster Crassostrea gigas is a sessile bivalve mollusc whose homeostasis relies, at least partially, upon cells circulating in hemolymph and referred to as hemocytes. Oyster's hemocytes have been reported to produce reactive oxygen species (ROS, even in absence of stimulation. Although ROS production in bivalve molluscs is mostly studied for its defence involvement, ROS may also be involved in cellular and tissue homeostasis. ROS sources have not yet been described in oyster hemocytes. The objective of the present work was to characterize the ROS sources in unstimulated hemocytes. We studied the effects of chemical inhibitors on the ROS production and the mitochondrial membrane potential (Δψ(m of hemocytes. First, this work confirmed the specificity of JC-10 probe to measure Δψ(m in oyster hemocytes, without being affected by ΔpH, as reported in mammalian cells. Second, results show that ROS production in unstimulated hemocytes does not originate from cytoplasmic NADPH-oxidase, nitric oxide synthase or myeloperoxidase, but from mitochondria. In contrast to mammalian cells, incubation of hemocytes with rotenone (complex I inhibitor had no effect on ROS production. Incubation with antimycin A (complex III inhibitor resulted in a dose-dependent ROS production decrease while an over-production is usually reported in vertebrates. In hemocytes of C. gigas, the production of ROS seems similarly dependent on both Δψ(m and ΔpH. These findings point out differences between mammalian models and bivalve cells, which warrant further investigation about the fine characterization of the electron transfer chain and the respective involvement of mitochondrial complexes in ROS production in hemocytes of bivalve molluscs.

Impacts of ocean acidification on gene expression and biomineralisation in the Pacific oyster Crassostrea gigas Thunberg, 1793

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Bagusche, F.; Pouvreau, S.; Trueman, C.; Long, S.; Hauton, C.

2012-04-01

The published evidence of impacts of ocean acidification and on marine calcifiers has emphasized the need to understand the molecular mechanisms of biomineralisation. Crassostrea gigas is an ideal organism to examine these processes as: 1) the hatchery rearing of larval stages is well constrained, 2) studies have established an ontogenetic switch in deposition of carbonate polymorphs from aragonite in larval shells to calcite in adults and 3) it is a globally-important commercial species. Research summarized in this presentation will identify some of the molecular mechanisms involved in calcification processes during ontogeny of Crassostrea gigas, as well as possible impacts of changes in environmental conditions such as temperature and pH. Data will be presented from a quantitative real-time PCR study of the changes in gene expression during development in different environments. Additionally scanning electron microscopy and infrared spectroscopy analyses of shell microstructures and composition will be summarised to correlate changes in gene expression with end-point differences in shell structure. Preliminary results suggest that changes in the environmental conditions lead to differences in expression patterns of genes involved in biomineralisation processes. The combined effects of ambient seawater temperature and low pH show the greatest negative effect on larval shell development, identified as malformations, eroded shell surfaces and a significant decrease in shell size. However, the effect of higher seawater temperature seems to amend the effects of ocean acidification on larval shell development.

Microbiological quality of oysters (Crassostrea gigas) produced and commercialized in the coastal region of Florianópolis - Brazil

OpenAIRE

Pereira,Murilo Anderson; Nunes,Márcia Menezes; Nuernberg,Leonardo; Schulz,Denys; Batista,Cleide Rosana Vieira

2006-01-01

Oysters are filter feeders able to ingest particles in suspension that may carry pathogenic microorganisms. In this respect, the consumption of raw oysters can cause foodborne diseases in humans. The aim of the present study was to evaluate the microbiological quality of Crassostrea gigas oysters cultivated and commercialized in the coastal region of Florianópolis, SC, Brazil. The study comprised counts of coliforms at 35ºC and at 45ºC, Escherichia coli and coagulase-positive staphylococci, a...

Gigabit Access Passive Optical Network Using Wavelength Division Multiplexing—GigaWaM

DEFF Research Database (Denmark)

Iglesias Olmedo, Miguel; Suhr, Lau; Prince, Kamau

2014-01-01

passive optical network (WDM-PON) architecture that can deliver symmetric 1 Gb/s to 64 users over 20 km standard single mode fiber using the L and C bands for down and upstream, respectively. During the course of the project, a number of key enabling technologies were developed including tunable......This paper summarizes the research and technical achievements done under the EU project GigaWaM. The goal of this project was to develop a cost-effective solution that can meet the increasing bandwidth demands in access networks. The approach was to use a novel wavelength division multiplexing...... transceivers, athermal 50 GHz spaced arrayed waveguide grating multiplexer devices, novel hybridization technologies for integration of passive and active electro-optic devices, and system-level algorithms that ensure the quality of service. The outcome of the project proved a reliable, cost...

GigaGauss solenoidal magnetic field inside bubbles excited in under-dense plasma

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Lécz, Zs.; Konoplev, I. V.; Seryi, A.; Andreev, A.

2016-10-01

This paper proposes a novel and effective method for generating GigaGauss level, solenoidal quasi-static magnetic fields in under-dense plasma using screw-shaped high intensity laser pulses. This method produces large solenoidal fields that move with the driving laser pulse and are collinear with the accelerated electrons. This is in contrast with already known techniques which rely on interactions with over-dense or solid targets and generates radial or toroidal magnetic field localized at the stationary target. The solenoidal field is quasi-stationary in the reference frame of the laser pulse and can be used for guiding electron beams. It can also provide synchrotron radiation beam emittance cooling for laser-plasma accelerated electron and positron beams, opening up novel opportunities for designs of the light sources, free electron lasers, and high energy colliders based on laser plasma acceleration.

Characteristic crystal orientation of folia in oyster shell, Crassostrea gigas

Energy Technology Data Exchange (ETDEWEB)

Lee, Seung Woo [Department of Chemical and Biomolecular Engineering, Sogang University, Seoul (Korea, Republic of); Kim, Gyeung Ho [Nano-Materials Reserch Center, Korea Institute of Science and Technology, Seoul (Korea, Republic of); Choi, Cheong Song [Department of Chemical and Biomolecular Engineering, Sogang University, Seoul (Korea, Republic of)], E-mail: cschoi@sogang.ac.kr

2008-03-10

The thin sheets of calcite, termed folia, that make up much of the shell of an oyster are composed of foliated lath. Folia of the giant Pacific oyster (Crassostrea gigas) were examined using TEM (transmission electron microscopy) and tested using microindentation and nanoindentation techniques. Analysis of the Kikuchi patterns obtained from the folia showed that there are two types (type I and type II) of preferred orientation, with an angle of around 70{sup o} between them. Nanoindentation tests showed that the folia exhibit a hardness of about 3 GPa and elastic modulus of about 73 GPa. Microcracks were generated using a microindenter in order to study the fracture mechanisms of the folia. Following on from these investigations, fracture mechanisms are discussed in conjunction with the correlation between preferred orientation and structural characteristics during cracking of the folia. Comparing the morphology and the polymorphism with nacre (also known as mother of pearl), the advantages of the relatively fast crystal growth and less amount of organic matrix in folia may have interesting implications for the development of sophisticated synthetic materials.

108mAg and 110mAg in crassostrea gigas

International Nuclear Information System (INIS)

Ishikawa, Y.; Sato, N.; Nakamura, E.; Sekine, T.; Yoshihara, K.

1992-01-01

Accumulation of radiosilver 108m Ag and 110m Ag in oysters (Crassostrea gigas) and their behavior in marine environments has been studied in the northeast Pacific coast in Japan. Enrichment of radiosilver in oysters depends on topographical conditions; significant bioaccumulation occurred in open bays, while it was hardly observed in bays with narrow shaped entrances. From these observations difference of the behavior of radiosilver between open and nearly closed bays is suggested. 110m Ag in oysters decayed with an effective half-life of about 150 days for both the Chinese nuclear weapon test and the Chernobyl accident. In contrast to radiosilver, the fission product nuclide 137 Cs was almost independent of topographical conditions, and its concentration was constant. 110m Ag bioaccumulation in oysters after the Chernobyl accident in 1986 was found in both open and nearly closed bays, the lattershowing much lower concentration of radiosilver than the former. Specific activity of 108m Ag in oysters was determined in bays open to the Pacific Oceans. (author) 13 refs.; 4 figs.; 3 tabs

Genomics study of the exposure effect of Gymnodinium catenatum, a paralyzing toxin producer, on Crassostrea gigas' defense system and detoxification genes.

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Norma García-Lagunas

Full Text Available BACKGROUND: Crassostrea gigas accumulates paralytic shellfish toxins (PST associated with red tide species as Gymnodinium catenatum. Previous studies demonstrated bivalves show variable feeding responses to toxic algae at physiological level; recently, only one study has reported biochemical changes in the transcript level of the genes involved in C. gigas stress response. PRINCIPAL FINDINGS: We found that 24 h feeding on toxic dinoflagellate cells (acute exposure induced a significant decrease in clearance rate and expression level changes of the genes involved in antioxidant defense (copper/zinc superoxide dismutase, Cu/Zn-SOD, cell detoxification (glutathione S-transferase, GST and cytochrome P450, CPY450, intermediate immune response activation (lipopolysaccharide and beta glucan binding protein, LGBP, and stress responses (glutamine synthetase, GS in Pacific oysters compared to the effects with the non-toxic microalga Isochrysis galbana. A sub-chronic exposure feeding on toxic dinoflagellate cells for seven and fourteen days (30×10³ cells mL⁻¹ showed higher gene expression levels. A significant increase was observed in Cu/Zn-SOD, GST, and LGBP at day 7 and a major increase in GS and CPY450 at day 14. We also observed that oysters fed only with G. catenatum (3×10³ cells mL⁻¹ produced a significant increase on the transcription level than in a mixed diet (3×10³ cells mL⁻¹ of G. catenatum+0.75×10⁶ cells mL⁻¹ I. galbana in all the analyzed genes. CONCLUSIONS: Our results provide gene expression data of PST producer dinoflagellate G. catenatum toxic effects on C. gigas, a commercially important bivalve. Over expressed genes indicate the activation of a potent protective mechanism, whose response depends on both cell concentration and exposure time against these toxic microalgae. Given the importance of dinoflagellate blooms in coastal environments, these results provide a more comprehensive overview of how oysters respond to

Genomics study of the exposure effect of Gymnodinium catenatum, a paralyzing toxin producer, on Crassostrea gigas' defense system and detoxification genes.

Science.gov (United States)

García-Lagunas, Norma; Romero-Geraldo, Reyna; Hernández-Saavedra, Norma Y

2013-01-01

Crassostrea gigas accumulates paralytic shellfish toxins (PST) associated with red tide species as Gymnodinium catenatum. Previous studies demonstrated bivalves show variable feeding responses to toxic algae at physiological level; recently, only one study has reported biochemical changes in the transcript level of the genes involved in C. gigas stress response. We found that 24 h feeding on toxic dinoflagellate cells (acute exposure) induced a significant decrease in clearance rate and expression level changes of the genes involved in antioxidant defense (copper/zinc superoxide dismutase, Cu/Zn-SOD), cell detoxification (glutathione S-transferase, GST and cytochrome P450, CPY450), intermediate immune response activation (lipopolysaccharide and beta glucan binding protein, LGBP), and stress responses (glutamine synthetase, GS) in Pacific oysters compared to the effects with the non-toxic microalga Isochrysis galbana. A sub-chronic exposure feeding on toxic dinoflagellate cells for seven and fourteen days (30×10³ cells mL⁻¹) showed higher gene expression levels. A significant increase was observed in Cu/Zn-SOD, GST, and LGBP at day 7 and a major increase in GS and CPY450 at day 14. We also observed that oysters fed only with G. catenatum (3×10³ cells mL⁻¹ produced a significant increase on the transcription level than in a mixed diet (3×10³ cells mL⁻¹ of G. catenatum+0.75×10⁶ cells mL⁻¹ I. galbana) in all the analyzed genes. Our results provide gene expression data of PST producer dinoflagellate G. catenatum toxic effects on C. gigas, a commercially important bivalve. Over expressed genes indicate the activation of a potent protective mechanism, whose response depends on both cell concentration and exposure time against these toxic microalgae. Given the importance of dinoflagellate blooms in coastal environments, these results provide a more comprehensive overview of how oysters respond to stress generated by toxic dinoflagellate exposure.

The enkephalinergic nervous system and its immunomodulation on the developing immune system during the ontogenesis of oyster Crassostrea gigas.

Science.gov (United States)

Liu, Zhaoqun; Zhou, Zhi; Wang, Lingling; Song, Xiaorui; Chen, Hao; Wang, Weilin; Liu, Rui; Wang, Mengqiang; Wang, Hao; Song, Linsheng

2015-08-01

Enkephalinergic neuroendocrine-immune regulatory system is one of the most important neuroendocrine-immune systems in both vertebrates and invertebrates for its significant role in the immune regulation. In the present study, the early onset of enkephalinergic nervous system and its immunomodulation on the developing immune system during the ontogenesis of oyster Crassostrea gigas were investigated to illustrate the function of neural regulation on the innate immune system in oyster larvae. [Met(5)]-enkephalin (Met-ENK) was firstly observed on the marginal of the dorsal half of D-hinged larvae. Six immune-related molecules, including four PRRs (CgCTL-1, CgCTL-2, CgCTL-4, CgNatterin-3) and two immune effectors (CgTNF-1 and CgEcSOD) were detected in the early developmental stages of trochophore, D-hinged and umbo larvae of oyster. After incubated with [Met(5)]-enkephalin, the mRNA expression level of all the PRRs changed significantly (p immune effectors were up-regulated significantly at 3 h and 6 h in trochophore larvae (p system of oyster was firstly appeared in D-hinged larvae, while the primitive immune defense system existed in the region of prototroch in trochophore larvae and developed maturely after D-hinged larvae. The developing immune system could be regulated by the neurotransmitter [Met(5)]-enkephalin released by the neuroendocrine system in oyster C. gigas. Copyright © 2015 Elsevier Ltd. All rights reserved.

Nervous system development in the Pacific oyster, Crassostrea gigas (Mollusca: Bivalvia).

Science.gov (United States)

Yurchenko, Olga V; Skiteva, Olga I; Voronezhskaya, Elena E; Dyachuk, Vyacheslav A

2018-01-01

Bivalves comprise a large, highly diverse taxon of invertebrate species. Developmental studies of neurogenesis among species of Bivalvia are limited. Due to a lack of neurogenesis information, it is difficult to infer a ground pattern for Bivalvia. To provide more comprehensive morphogenetic data on bivalve molluscs and relationships among molluscan clades, we investigated neurogenesis in the Pacific oyster, Crassostrea gigas , from the appearance of the first sensory cells to the formation of the larval ganglionic nervous system by co-immunocytochemistry of the neuronal markers FMRFamide or 5-HT and vesicular acetylcholine transporter (VAChT). Neurogenesis begins with the emergence of the apical serotonin-immunoreactive (5-HT-ir) sensory cells and paired sensory posttrochal dorsal and ventral FMRFamide-immunoreactive (FMRFamide-ir) cells at the early trochophore stage. Later, at the early veliger stage, the apical organ (AO) includes 5-HT-ir, FMRFamide-ir, and VAChT-ir cells. At the same stage, VAChT-ir cells appear in the posterior region of larvae and send axons towards the AO. Thus, FMRFamide-ir neurites and VAChT-ir processes form scaffolds for longitudinal neurite bundles develop into the paired ventral nerve cords (VNC). Later-appearing axons from the AO/CG neurons join the neurite bundles comprising the VNC. All larval ganglia appear along the VNC as paired or fused (epiathroid) clusters in late veliger and pediveliger larvae. We observed the transformation of the AO into the cerebral ganglia, which abundantly innervated the velum, and the transformation of ventral neurons into the pedal ganglia, innervating the foot, gills, and anterior adductor muscle. The visceral ganglia appear last in the pediveliger oyster and innervate the visceral mass and posterior adductor of premetamorphic larvae. In addition, a local FMRFamide-ir network was detected in the digestive system of pediveliger larvae. We identified VAChT-ir nervous elements in oyster larvae, which

D1 dopamine receptor is involved in shell formation in larvae of Pacific oyster Crassostrea gigas.

Science.gov (United States)

Liu, Zhaoqun; Wang, Lingling; Yan, Yunchen; Zheng, Yan; Ge, Wenjing; Li, Meijia; Wang, Weilin; Song, Xiaorui; Song, Linsheng

2018-07-01

Dopamine (DA), a significant member of catecholamines, is reported to induce biomineralization of calcium carbonate vaterite microspheres via dopamine receptor (DR) in bivalves, implying the modulation of dopaminergic system on shell formation during larval development. In this research, a homologue of D1 type DR (CgD1DR-1) was identified from oyster Crassostrea gigas, whose full length cDNA was 1197 bp. It was widely expressed in various tissues of C. gigas, with the significantly higher levels in hepatopancreas, mantle, muscle and gill. During developmental stages, the mRNA transcripts of CgD1DR-1 in D-shape larvae were obviously higher (p < 0.05) than those in trochophore and umbo larvae, and CO 2 exposure could inhibit the synthesis of DA and mRNA expression of CgD1DR-1. After cell transfection and DA treatment, intracellular cAMP in cells with the expression of CgD1DR-1 increased significantly (p < 0.05). Furthermore, the incubation with SCH 23390 for the blockage of CgD1DR-1 significantly restrained the expressions of six shell formation-related genes including CgTyrosinase-1, CgTyrosinase-3, CgChitinaseLP, CgAMC, CgBMP and CgBMPR in trochophore and D-shape larvae. These results jointly suggested that DA together with its receptor CgD1DR-1 might be involved in shell formation during oyster larval development from trochophore to D-shape larvae, and CO 2 -induced ocean acidification (OA) might influence marine bivalves by inhibiting the DA-D1DR pathway to prohibit their shell formation. Copyright © 2018 Elsevier Ltd. All rights reserved.

Production of Generation-2 Mekong giant catfish (Pangasinodon gigas cultured with Spirulina sp.

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Kriangsak Meng-umphan

2008-11-01

Full Text Available The purpose of this study is to evaluate the treatment of Spirulina-supplemented pellet feed to 5-year-old F1 groups of Mekong giant catfish (Pangasinodon gigas from the brood stock and intended for use as breeders. The effects on their growth and maturation when cultured in an earthen pond were observed. Results revealed that, compared to control, there was more gain in weight while the feed conversion ratio was lower. The number of red blood cells was also higher while that of white blood cells was lower, compared to control. Out of 18 treated fish (9 males and 9 females, 6 males and 2 females gave sperms and eggs while none from control group did. It was concluded that Spirulina supplemented in pellet feed can improve growth and maturation performance to the brood stock of Mekong giant catfish.

Characterisation of the NA62 GigaTracker end of column readout ASIC

International Nuclear Information System (INIS)

Noy, M; Rinella, G Aglieri; Fiorini, M; Jarron, P; Kaplon, J; Kluge, A; Morel, M; Perktold, L; Riedler, P; Martin, E

2011-01-01

The architecture and characterisation of the End Of Column demonstrator readout ASIC for the NA62 GigaTracker hybrid pixel detector is presented. This ASIC serves as a proof of principle for a pixel chip with 1800 pixels which must perform time stamping to better than 200 ps (RMS), provide 300 μm pitch position information and operate with a dead-time of 1% or less for 800 MHz-1 GHz beam rate. The demonstrator ASIC comprises a full test column with 45 pixels alongside other test structures. The timewalk correction mechanism employed is measurement of the time-over-threshold, coupled with an off-detector look-up table. The time to digital converter is a delay locked loop with 32 contributing delay cells fed with a 320 MHz to yield a nominal bin size of 97 ps. Recently, P-in-N sensors have been bump-bonded to the ASIC and characterisation of these assemblies has begun.

Effects of Antifouling Biocides on Molecular and Biochemical Defense System in the Gill of the Pacific Oyster Crassostrea gigas.

Science.gov (United States)

Park, Mi Seon; Kim, Young Dae; Kim, Bo-Mi; Kim, Youn-Jung; Kim, Jang Kyun; Rhee, Jae-Sung

2016-01-01

Antifouling biocides such as organotin compounds and their alternatives are potent toxicants in marine ecosystems. In this study, we employed several molecular and biochemical response systems of the Pacific oyster Crassostrea gigas to understand a potential mode of action of antifouling biocides (i.e. tributyltin (TBT), diuron and irgarol) after exposure to different concentrations (0.01, 0.1, and 1 μg L-1) for 96 h. As a result, all the three antifouling biocides strongly induced the antioxidant defense system. TBT reduced both enzymatic activity and mRNA expression of Na+/K+-ATPase and acetylcholinesterase (AChE). Lower levels of both Na+/K+-ATPase activity and AChE mRNA expression were observed in the diuron-exposed oysters compared to the control, while the irgarol treatment reduced only the transcriptional expression of AChE gene. We also analyzed transcript profile of heat shock protein (Hsp) superfamily in same experimental conditions. All antifouling biocides tested in this study significantly modulated mRNA expression of Hsp superfamily with strong induction of Hsp70 family. Taken together, overall results indicate that representative organotin TBT and alternatives have potential hazardous effects on the gill of C. gigas within relatively short time period. Our results also suggest that analyzing a series of molecular and biochemical parameters can be a way of understanding and uncovering the mode of action of emerging antifouling biocides. In particular, it was revealed that Pacific oysters have different sensitivities depend on the antifouling biocides.

Effects of Antifouling Biocides on Molecular and Biochemical Defense System in the Gill of the Pacific Oyster Crassostrea gigas

Science.gov (United States)

Park, Mi Seon; Kim, Young Dae; Kim, Bo-Mi; Kim, Youn-Jung; Kim, Jang Kyun; Rhee, Jae-Sung

2016-01-01

Antifouling biocides such as organotin compounds and their alternatives are potent toxicants in marine ecosystems. In this study, we employed several molecular and biochemical response systems of the Pacific oyster Crassostrea gigas to understand a potential mode of action of antifouling biocides (i.e. tributyltin (TBT), diuron and irgarol) after exposure to different concentrations (0.01, 0.1, and 1 μg L-1) for 96 h. As a result, all the three antifouling biocides strongly induced the antioxidant defense system. TBT reduced both enzymatic activity and mRNA expression of Na+/K+-ATPase and acetylcholinesterase (AChE). Lower levels of both Na+/K+-ATPase activity and AChE mRNA expression were observed in the diuron-exposed oysters compared to the control, while the irgarol treatment reduced only the transcriptional expression of AChE gene. We also analyzed transcript profile of heat shock protein (Hsp) superfamily in same experimental conditions. All antifouling biocides tested in this study significantly modulated mRNA expression of Hsp superfamily with strong induction of Hsp70 family. Taken together, overall results indicate that representative organotin TBT and alternatives have potential hazardous effects on the gill of C. gigas within relatively short time period. Our results also suggest that analyzing a series of molecular and biochemical parameters can be a way of understanding and uncovering the mode of action of emerging antifouling biocides. In particular, it was revealed that Pacific oysters have different sensitivities depend on the antifouling biocides. PMID:28006823

Genetic parameters of resistance to Vibrio aestuarianus, and OsHV-1 infections in the Pacific oyster, Crassostrea gigas, at three different life stages.

Science.gov (United States)

Azéma, Patrick; Lamy, Jean-Baptiste; Boudry, Pierre; Renault, Tristan; Travers, Marie-Agnès; Dégremont, Lionel

2017-02-15

In France, two main diseases threaten Pacific oyster production. Since 2008, Crassostrea gigas spat have suffered massive losses due to the ostreid herpesvirus OsHV-1, and since 2012, significant mortalities in commercial-size adults have been related to infection by the bacterium Vibrio aestuarianus. The genetic basis for resistance to V. aestuarianus and OsHV-1 and the nature of the genetic correlation between these two traits were investigated by using 20 half-sib sire families, each containing two full-sib families. For each disease, controlled infectious challenges were conducted using naïve oysters that were 3 to 26 months old. In addition, siblings were tested under field, pond and raceway conditions to determine whether laboratory trials reflected mortality events that occur in the oyster industry. First, we estimated the genetic basis of resistance to V. aestuarianus in C. gigas. Susceptibility to the infection was low for oysters in spat stage but increased with later life stages. Second, we confirmed a strong genetic basis of resistance to OsHV-1 infection at early stages and demonstrated that it was also strong at later stages. Most families had increased resistance to OsHV-1 infection from the spat to adult stages, while others consistently showed low or high mortality rates related to OsHV-1 infection, regardless of the life stage. Our third main finding was the absence of genetic correlations between resistance to OsHV-1 infection and resistance to V. aestuarianus infection. Selective breeding to enhance resistance to OsHV-1 infection could be achieved through selective breeding at early stages and would not affect resistance to V. aestuarianus infection. However, our results suggest that the potential to select for improved resistance to V. aestuarianus is lower. Selection for dual resistance to OsHV-1 and V. aestuarianus infection in C. gigas might reduce the impact of these two major diseases by selecting families that have the highest

Haemocytes from Crassostrea gigas and OsHV-1: A promising in vitro system to study host/virus interactions.

Science.gov (United States)

Morga, Benjamin; Faury, Nicole; Guesdon, Stéphane; Chollet, Bruno; Renault, Tristan

2017-11-01

Since 2008, mass mortality outbreaks associated with the detection of particular variants of OsHV-1 have been reported in Crassostrea gigas spat and juveniles in several countries. Recent studies have reported information on viral replication during experimental infection. Viral DNA and RNA were also detected in the haemolymph and haemocytes suggesting that the virus could circulate through the circulatory system. However, it is unknown if the virus is free in the haemolymph, passively associated at the surface of haemocytes, or able to infect and replicate inside these cells inducing (or not) virion production. In the present study, we collected haemocytes from the haemolymphatic sinus of the adductor muscle of healthy C. gigas spat and exposed them in vitro to a viral suspension. Results showed that viral RNAs were detectable one hour after contact and the number of virus transcripts increased over time in association with an increase of viral DNA detection. These results suggested that the virus is able to initiate replication rapidly inside haemocytes maintained in vitro. These in vitro trials were also used to carry out a dual transcriptomic study. We analyzed concomitantly the expression of some host immune genes and 15 viral genes. Results showed an up regulation of oyster genes currently studied during OsHV-1 infection. Additionally, transmission electron microscopy examination was carried out and did not allow the detection of viral particles. Moreover, All the results suggested that the in vitro model using haemocytes can be valuable for providing new perspective on virus-oyster interactions. Copyright © 2017 Elsevier Inc. All rights reserved.

The floating forest: traditional knowledge and use of matupá vegetation islands by riverine peoples of the central Amazon.

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Carolina T de Freitas

Full Text Available Matupás are floating vegetation islands found in floodplain lakes of the central Brazilian Amazon. They form initially from the agglomeration of aquatic vegetation, and through time can accumulate a substrate of organic matter sufficient to grow forest patches of several hectares in area and up to 12 m in height. There is little published information on matupás despite their singular characteristics and importance to local fauna and people. In this study we document the traditional ecological knowledge of riverine populations who live near and interact with matupás. We expected that their knowledge, acquired through long term observations and use in different stages of the matupá life cycle, could help clarify various aspects about the ecology and natural history of these islands that field biologists may not have had the opportunity to observe. Research was carried out in five riverine communities of the Amanã Sustainable Development Reserve (Brazil. Semi-structured interviews were conducted with 45 inhabitants in order to register local understandings of how matupás are formed, biotic/abiotic factors related to their occurrence, the plants and animals that occur on them, their ecological relevance, and local uses. Local people elucidated several little-known aspects about matupá ecology, especially regarding the importance of seasonal dynamics of high/low water for matupás formation and the relevance of these islands for fish populations. Soil from matupás is especially fertile and is frequently gathered for use in vegetable gardens. In some cases, crops are planted directly onto matupás, representing an incipient agricultural experiment that was previously undocumented in the Amazon. Matupás are also considered a strategic habitat for fishing, mainly for arapaima (Arapaima gigas. The systematic study of traditional ecological knowledge proved to be an important tool for understanding this little-known Amazonian landscape.

CP violation in the 3 jet and 4 jet decays of the Z boson at GigaZ

International Nuclear Information System (INIS)

Nachtmann, O.

2003-08-01

We review CP-violating effects in Z → 3 jet and Z → 4 jet decays, assuming the presence of CP-violating effective ZbbG and ZbbGG couplings. Longitudinal beam polarization is included in the studies. We propose a direct search for such CP-violating couplings by using various CP-odd observables. The data of a future linear collider running at the Z-resonance in the so-called GigaZ option should give significant information on the couplings. Finally we show that stringent bounds on the mass of excited b quarks can be derived if appropriate couplings are of a size characteristic of a strong interaction. (orig.)

Giga-voxel computational morphogenesis for structural design

Science.gov (United States)

Aage, Niels; Andreassen, Erik; Lazarov, Boyan S.; Sigmund, Ole

2017-10-01

In the design of industrial products ranging from hearing aids to automobiles and aeroplanes, material is distributed so as to maximize the performance and minimize the cost. Historically, human intuition and insight have driven the evolution of mechanical design, recently assisted by computer-aided design approaches. The computer-aided approach known as topology optimization enables unrestricted design freedom and shows great promise with regard to weight savings, but its applicability has so far been limited to the design of single components or simple structures, owing to the resolution limits of current optimization methods. Here we report a computational morphogenesis tool, implemented on a supercomputer, that produces designs with giga-voxel resolution—more than two orders of magnitude higher than previously reported. Such resolution provides insights into the optimal distribution of material within a structure that were hitherto unachievable owing to the challenges of scaling up existing modelling and optimization frameworks. As an example, we apply the tool to the design of the internal structure of a full-scale aeroplane wing. The optimized full-wing design has unprecedented structural detail at length scales ranging from tens of metres to millimetres and, intriguingly, shows remarkable similarity to naturally occurring bone structures in, for example, bird beaks. We estimate that our optimized design corresponds to a reduction in mass of 2-5 per cent compared to currently used aeroplane wing designs, which translates into a reduction in fuel consumption of about 40-200 tonnes per year per aeroplane. Our morphogenesis process is generally applicable, not only to mechanical design, but also to flow systems, antennas, nano-optics and micro-systems.

Non-additive effects of ocean acidification in combination with warming on the larval proteome of the Pacific oyster, Crassostrea gigas.

Science.gov (United States)

Harney, Ewan; Artigaud, Sébastien; Le Souchu, Pierrick; Miner, Philippe; Corporeau, Charlotte; Essid, Hafida; Pichereau, Vianney; Nunes, Flavia L D

2016-03-01

Increasing atmospheric carbon dioxide results in ocean acidification and warming, significantly impacting marine invertebrate larvae development. We investigated how ocean acidification in combination with warming affected D-veliger larvae of the Pacific oyster Crassostrea gigas. Larvae were reared for 40h under either control (pH8.1, 20 °C), acidified (pH7.9, 20 °C), warm (pH8.1, 22 °C) or warm acidified (pH7.9, 22 °C) conditions. Larvae in acidified conditions were significantly smaller than in the control, but warm acidified conditions mitigated negative effects on size, and increased calcification. A proteomic approach employing two-dimensional electrophoresis (2-DE) was used to quantify proteins and relate their abundance to phenotypic traits. In total 12 differentially abundant spots were identified by nano-liquid chromatography-tandem mass spectrometry. These proteins had roles in metabolism, intra- and extra-cellular matrix formations, stress response, and as molecular chaperones. Seven spots responded to reduced pH, four to increased temperature, and six to acidification and warming. Reduced abundance of proteins such as ATP synthase and GAPDH, and increased abundance of superoxide dismutase, occurred when both pH and temperature changes were imposed, suggesting altered metabolism and enhanced oxidative stress. These results identify key proteins that may be involved in the acclimation of C. gigas larvae to ocean acidification and warming. Increasing atmospheric CO2 raises sea surface temperatures and results in ocean acidification, two climatic variables known to impact marine organisms. Larvae of calcifying species may be particularly at risk to such changing environmental conditions. The Pacific oyster Crassostrea gigas is ecologically and commercially important, and understanding its ability to acclimate to climate change will help to predict how aquaculture of this species is likely to be impacted. Modest, yet realistic changes in pH and

Spatial patterns in the condition index of the wild Pacific oyster Crassostrea gigas in a macrotidal coastal ecosystem: Influence of tidal processes and beyond

Science.gov (United States)

Gasmi, Sonia; Bernard, Ismaël; Pouvreau, Stéphane; Maurer, Danièle; Schaal, Gauthier; Ganthy, Florian; Cominassi, Louise; Allain, Gwenhael; Sautour, Benoit; David, Valérie

2017-01-01

In macrotidal coastal ecosystems, spatial heterogeneity of the water column properties is induced by both oceanic and continental influences. Hydrodynamic processes generate a land-sea gradient of environmental conditions, affecting the biological performances of sedentary organisms. The aim of the present study is to establish an extensive spatial assessment in the reproductive investment of the wild Pacific oyster Crassostrea gigas in Arcachon Bay. This is done by looking for a relationship between the Lawrence and Scott condition index (LSCI) and two tidal processes: the immersion level (IL) and the local oceanic flushing time (LoFt). The LSCI of C. gigas was assessed, just before gamete release, at 68 sampling stations in Arcachon Bay. Oyster performance was overall low and spatially variable. Significant differences in the LSCI were detected between the outer and inner bay. Oyster reefs located toward the mouth of the bay exhibited high LSCI (between 9 and 11), while oyster reefs located in inner bay, especially in south-eastern part around the Eyre River, had low LSCI (below 6). Linear modelling allowed to highlight significant effects of both tidal processes IL and LoFt on the obtained LSCI gradient. IL, LoFt explained 33% of the spatial variability observed on LSCI (IL = 3%; LoFt = 17%; LoFt + IL: 13%), 6% were attributed to the intra-station variation (ISv). Thus, high IL and rapid LoFt favor a better development of somatic-gonadal volume, probably because of longer feeding time and higher supply of food from the ocean by tide flows. Disentangling the effects of IL and LoFt on LSCI allowed to describe the spatial pattern in 61% of variability not explained by both tidal factors. A residual gradient directed southeast-northwest highlighted that others factors, independent from IL and LoFt seems to hamper inner bay oyster reproductive performance. Consequently, investigating on the ecological functioning (Eyre influences), trophic potential and anthropogenic

Cellular and biochemical responses of the oyster Crassostrea gigas to controlled exposures to metals and Alexandrium minutum

Energy Technology Data Exchange (ETDEWEB)

Haberkorn, Hansy; Lambert, Christophe; Le Goïc, Nelly [Laboratoire des Sciences de l‘Environnement Marin, UMR 6539, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Place Copernic, Technopôle Brest-Iroise, 29280 Plouzané (France); Quéré, Claudie [IFREMER Centre de Brest, Laboratoire de Physiologie des Invertébrés, Unité Physiologie Fonctionnelle des Organismes Marins, BP 70, 29280 Plouzané (France); Bruneau, Audrey; Riso, Ricardo; Auffret, Michel [Laboratoire des Sciences de l‘Environnement Marin, UMR 6539, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Place Copernic, Technopôle Brest-Iroise, 29280 Plouzané (France); Soudant, Philippe, E-mail: Philippe.Soudant@univ-brest.fr [Laboratoire des Sciences de l‘Environnement Marin, UMR 6539, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Place Copernic, Technopôle Brest-Iroise, 29280 Plouzané (France)

2014-02-15

Highlights: •Oysters, C. gigas, were exposed to both metals and PST-producer A. minutum. •Oysters exposed to metals accumulated about thirty-six times less PSTs. •Exposure to both metals and A. minutum induced antagonistic or synergetic effects. -- Abstract: Effects of simultaneous exposure of Pacific oyster, Crassostrea gigas, to both a harmful dinoflagellate that produces Paralytic Shellfish Toxins (PST), Alexandrium minutum, and cadmium (Cd) and copper (Cu), were assessed. Oysters were exposed to a mix of Cd–Cu with two different diets (i.e. A. minutum or Tisochrysis lutea) and compared to control oysters fed A. minutum or T. lutea, respectively, without metal addition. Metals and PST accumulations, digestive gland lipid composition, and cellular and biochemical hemolymph variables were measured after 4 days of exposure. Oysters exposed to Cd–Cu accumulated about thirty-six times less PSTs than oysters exposed to A. minutum alone. Exposure to Cd–Cu induced significant changes in neutral lipids (increase in diacylglycerol – DAG – and decrease in sterols) and phospholipids (decreases in phosphatidylcholine, phosphatidylethanolamine, cardiolipin and ceramide aminoethylphosphonate) of digestive gland suggesting that lipid metabolism disruptions and/or lipid peroxidation have occurred. Simultaneously, concentrations, percentages of dead cells and phenoloxidase activity of hemocytes increased in oysters exposed to metals while reactive oxygen species production of hemocytes decreased. Feeding on the harmful dinoflagellate A. minutum resulted in significant decreases in monoacylglycerol (MAG) and DAG and ether glycerides (EG), as well as significant increases in hemocyte concentration and phagocytic activity as compared to oysters fed T. lutea. Finally, the present study revealed that short-term, simultaneous exposure to Cd–Cu and A. minutum may induce antagonistic (i.e. hemocyte concentration and phagocytosis) or synergic (i.e. DAG content in

CP violation in the 3 jet and 4 jet decays of the Z boson at GigaZ

International Nuclear Information System (INIS)

Nachtmann, O.; Schwanenberger, C.

2004-01-01

We review CP-violating effects in Z → 3 jet and Z → 4 jet decays, assuming the presence of CP-violating effective Zb anti bG and Zb anti bGG couplings. Longitudinal beam polarization is included in the studies. We propose a direct search for such CP-violating couplings by using various CP-odd observables. The data of a future linear collider running at the Z-resonance in the so-called GigaZ option should give significant information on the couplings. Finally we show that stringent bounds on the mass of excited b quarks can be derived if appropriate couplings are of a size characteristic of a strong interaction. (orig.)

A High-Density SNP Genetic Linkage Map and QTL Analysis of Growth-Related Traits in a Hybrid Family of Oysters (Crassostrea gigas × Crassostrea angulata Using Genotyping-by-Sequencing

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Jinpeng Wang

2016-05-01

Full Text Available Oysters are among the most important species in global aquaculture. Crassostrea gigas, and its subspecies C. angulata, are the major cultured species. To determine the genetic basis of growth-related traits in oysters, we constructed a second-generation linkage map from 3367 single-nucleotide polymorphisms (SNPs based on genotyping-by-sequencing, genotyped from a C. gigas × C. angulata hybrid family. These 3367 SNPs were distributed on 1695 markers, which were assigned to 10 linkage groups. The genetic linkage map had a total length of 1084.3 cM, with an average of 0.8 cM between markers; it thus represents the densest genetic map constructed for oysters to date. Twenty-seven quantitative trait loci (QTL for five growth-related traits were detected. These QTL could explain 4.2–7.7% (mean = 5.4% of the phenotypic variation. In total, 50.8% of phenotypic variance for shell width, 7.7% for mass weight, and 34.1% for soft tissue weight were explained. The detected QTL were distributed among eight linkage groups, and more than half (16 were concentrated within narrow regions in their respective linkage groups. Thirty-eight annotated genes were identified within the QTL regions, two of which are key genes for carbohydrate metabolism. Other genes were found to participate in assembly and regulation of the actin cytoskeleton, signal transduction, and regulation of cell differentiation and development. The newly developed high-density genetic map, and the QTL and candidate genes identified provide a valuable genetic resource and a basis for marker-assisted selection for C. gigas and C. angulata.

Mission Design and Concept of Operations of a 6U CubeSat Mission for Proximity Operations and RSO Imaging

Science.gov (United States)

2013-05-29

the time being, to offer the best price-performance combination on the market . The manufacturer quoted accuracy of the S3S is 7as normal to the STR...Since ARAPAIMA flies in LEO an atmospheric re- entry is planned as the end-of-life for ARAPAIMA. Support of the Air Force Space Test Program ( STP

Small size today, aquarium dumping tomorrow: sales of juvenile non-native large fish as an important threat in Brazil

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André L. B. Magalhães

2017-12-01

Full Text Available ABSTRACT Informal sales of large-bodied non-native aquarium fishes (known as “tankbusters” is increasing among Brazilian hobbyists. In this study, we surveyed this non-regulated trade on Facebook® from May 2012 to September 2016, systematically collecting information about the fishes available for trading: species, family, common/scientific names, native range, juvenile length, behavior, number of specimens available in five geographical regions from Brazil. We also assessed the invasion risk of the most frequently sold species using the Fish Invasiveness Screening Test (FIST. We found 93 taxa belonging to 35 families. Cichlidae was the dominant family, and most species were native to South America. All species are sold at very small sizes (< 10.0 cm, and most display aggressive behavior. The hybrid Amphilophus trimaculatus × Amphilophus citrinellus, Astronotus ocellatus, Uaru amphiacanthoides, Osteoglossum bicirrhosum, Cichla piquiti, Pangasianodon hypophthalmus, Datnioides microlepis and Cichla kelberi were the main species available. The southeast region showed the greatest trading activity. Based on biological traits, the FIST indicated that Arapaima gigas, C. kelberi and C. temensis are high-risk species in terms of biological invasions via aquarium dumping. We suggest management strategies such as trade regulations, monitoring, euthanasia and educational programs to prevent further introductions via aquarium dumping.

A conceptual model for site-level ecology of the giant gartersnake (Thamnophis gigas) in the Sacramento Valley, California

Science.gov (United States)

Halstead, Brian J.; Wylie, Glenn D.; Casazza, Michael L.; Hansen, Eric C.; Scherer, Rick D.; Patterson, Laura C.

2015-08-14

Giant gartersnakes (Thamnophis gigas) comprise a species of semi-aquatic snakes precinctive to marshes in the Central Valley of California (Hansen and Brode, 1980; Rossman and others, 1996). Because more than 90 percent of their historical wetland habitat has been converted to other uses (Frayer and others, 1989; Garone, 2007), giant gartersnakes have been listed as threatened by the State of California (California Department of Fish and Game Commission , 1971) and the United States (U.S. Fish and Wildlife Service, 1993). Giant gartersnakes currently occur in a highly modified landscape, with most extant populations occurring in the rice - growing regions of the Sacramento Valley, especially near areas that historically were tule marsh habitat (Halstead and others, 2010, 2014).

Viral gametocytic hypertrophy caused by a papova-like virus infection in the Pacific oyster Crassostrea gigas in Korea.

Science.gov (United States)

Choi, Dong Lim; Lee, Nam-Sil; Choi, Hee Jung; Park, Myoung-Ae; McGladdery, Sharon E; Park, Mi Seon

2004-06-11

During a routine survey of the Pacific oyster Crassostrea gigas in Tongyoung (previously Chungmu) on the southern coast of Korea, basophilic inclusions were observed in the gonadal tissues. They were detected from March to May at a prevalence rate of 3.3 to 7.1%. The inclusion bodies were Feulgen-positive and stained orange-red with phloxine tartrazine. Electron microscopic observation revealed non-enveloped, icosahedral particles 40 to 45 nm in diameter. These morphological characteristics resemble those of papova virus-like inclusions previously described from Pacific and eastern (American) oysters C. virginica in North America. Although many mitochondrial bodies and intact sperm cells were observed around the inclusion body, no host reaction, such as hemocytic infiltration, was detected.

Characterisation of the NA62 GigaTracker End of Column Demonstrator Hybrid Pixel Detector

Science.gov (United States)

Noy, M.; Aglieri Rinella, G.; Cotta Ramusino, A.; Fiorini, M.; Jarron, P.; Kaplon, J.; Kluge, A.; Martin, E.; Morel, M.; Perktold, L.; Poltorak, K.; Riedler, P.

2011-11-01

The architecture and characterisation of the NA62 GigaTracker End of Column Demonstrator Hybrid Pixel Detector (HPD) are presented. This detector must perform time stamping to 200 ps (RMS) or better, provide 300 μm pitch position information and operate with a dead time of 1% or less for 800 MHz-1 GHz beam rate. The demonstrator HPD Assembly comprises a readout chip with a test column of 45 pixels, alongside other test structures, bump bonded to a p-in-n detector 200 μm in thickness. Validation of the performance of the HPD and the time-over-threshold timewalk compensation mechanism with both beam particles and a high precision laser system was performed and is presented. Confirmation of better than the required time stamping precision has been demonstrated and subsequent work on the design of the full-scale ASIC, dubbed TDCPix, is underway. An overview of the TDCPix architecure is given.

Molecular analysis of bacterial microbiota associated with oysters (Crassostrea gigas and Crassostrea corteziensis) in different growth phases at two cultivation sites.

Science.gov (United States)

Trabal, Natalia; Mazón-Suástegui, José M; Vázquez-Juárez, Ricardo; Asencio-Valle, Felipe; Morales-Bojórquez, Enrique; Romero, Jaime

2012-08-01

Microbiota presumably plays an essential role in inhibiting pathogen colonization and in the maintenance of health in oysters, but limited data exist concerning their different growth phases and conditions. We analyzed the bacterial microbiota composition of two commercial oysters: Crassostrea gigas and Crassostrea corteziensis. Differences in microbiota were assayed in three growth phases: post-larvae at the hatchery, juvenile, and adult at two grow-out cultivation sites. Variations in the microbiota were assessed by PCR analysis of the 16S rRNA gene in DNA extracted from depurated oysters. Restriction fragment length polymorphism (RFLP) profiles were studied using Dice's similarity coefficient (Cs) and statistical principal component analysis (PCA). The microbiota composition was determined by sequencing temperature gradient gel electrophoresis (TGGE) bands. The RFLP analysis of post-larvae revealed homology in the microbiota of both oyster species (Cs > 88 %). Dice and PCA analyses of C. corteziensis but not C. gigas showed differences in the microbiota according to the cultivation sites. The sequencing analysis revealed low bacterial diversity (primarily β-Proteobacteria, Firmicutes, and Spirochaetes), with Burkholderia cepacia being the most abundant bacteria in both oyster species. This study provides the first description of the microbiota in C. corteziensis, which was shown to be influenced by cultivation site conditions. During early growth, we observed that B. cepacia colonized and remained strongly associated with the two oysters, probably in a symbiotic host-bacteria relationship. This association was maintained in the three growth phases and was not altered by environmental conditions or the management of the oysters at the grow-out site.

Whole transcriptome profiling of successful immune response to Vibrio infections in the oyster Crassostrea gigas by digital gene expression analysis.

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Julien de Lorgeril

Full Text Available The cultivated Pacific oyster Crassostrea gigas has suffered for decades large scale summer mortality phenomenon resulting from the interaction between the environment parameters, the oyster physiological and/or genetic status and the presence of pathogenic microorganisms including Vibrio species. To obtain a general picture of the molecular mechanisms implicated in C. gigas immune responsiveness to circumvent Vibrio infections, we have developed the first deep sequencing study of the transcriptome of hemocytes, the immunocompetent cells. Using Digital Gene Expression (DGE, we generated a transcript catalog of up-regulated genes from oysters surviving infection with virulent Vibrio strains (Vibrio splendidus LGP32 and V. aestuarianus LPi 02/41 compared to an avirulent one, V. tasmaniensis LMG 20012(T. For that an original experimental infection protocol was developed in which only animals that were able to survive infections were considered for the DGE approach. We report the identification of cellular and immune functions that characterize the oyster capability to survive pathogenic Vibrio infections. Functional annotations highlight genes related to signal transduction of immune response, cell adhesion and communication as well as cellular processes and defence mechanisms of phagocytosis, actin cytosqueleton reorganization, cell trafficking and autophagy, but also antioxidant and anti-apoptotic reactions. In addition, quantitative PCR analysis reveals the first identification of pathogen-specific signatures in oyster gene regulation, which opens the way for in depth molecular studies of oyster-pathogen interaction and pathogenesis. This work is a prerequisite for the identification of those physiological traits controlling oyster capacity to survive a Vibrio infection and, subsequently, for a better understanding of the phenomenon of summer mortality.

Rare occurrence of heart lesions in Pacific oysters Crassostrea gigas caused by an unknown bacterial infection.

Science.gov (United States)

Meyer, Gary R; Lowe, Geoffrey J; Bower, Susan M

2017-09-20

On rare occasions, small cream-coloured cysts have been observed in the heart and pericardial cavity of Pacific oysters Crassostrea gigas from British Columbia, Canada. Histopathology revealed the presence of large colonies of bacteria (up to 800 µm in diameter) causing significant host response and hypertrophy of the heart epithelium. The causative bacteria were characterized as follows: Gram-negative, coccoid to small rod-shaped, typically <1.5 µm in size, cell walls highly endowed with surface fimbriae and division via binary fission. Although these bacteria shared some morphological characteristics with the order Rickettsiales, they did not require an intracellular existence for multiplication. Unfortunately, a cultured isolate was not available, and a retrospective attempt to further characterize the bacteria using DNA sequence analysis of a fragment from the 16S rDNA region proved to be uninformative.

Feeding traits of the European flat oyster, Ostrea edulis, and the invasive Pacific oyster, Crassostrea gigas

DEFF Research Database (Denmark)

Nielsen, Mette; Hansen, Benni Winding; Vismann, Bent

2017-01-01

Two oysters, the native flat oyster, Ostrea edulis, and the non-indigenous Pacific oyster, Crassostrea gigas, have partially overlapping distributions in European waters. Relatively little is known about particle selection by O. edulis, and the goal of the present study was to establish baselines...... for particle selection by both oyster species under controlled conditions in the laboratory. The study was carried out with adult oysters of similar shell size collected in the Limfjord estuary, Denmark (56°47′N, 08°51′E), in November 2011. The feeding traits of both species [clearance rate (CR), retention...... efficiency (RE) and lower threshold for clearance (LTC)] were compared using five algal species with different cell sizes (5−32 µm ESD) (Isochrysis galbana, Rhodomonas salina, Thalassiosira weissflogii, Prorocentrum micans and Akashiwo sanguinea). Oysters were acclimated to an experimental temperature of 22...

Gametogenesis in the Pacific oyster Crassostrea gigas: a microarrays-based analysis identifies sex and stage specific genes.

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Nolwenn M Dheilly

Full Text Available BACKGROUND: The Pacific oyster Crassostrea gigas (Mollusca, Lophotrochozoa is an alternative and irregular protandrous hermaphrodite: most individuals mature first as males and then change sex several times. Little is known about genetic and phenotypic basis of sex differentiation in oysters, and little more about the molecular pathways regulating reproduction. We have recently developed and validated a microarray containing 31,918 oligomers (Dheilly et al., 2011 representing the oyster transcriptome. The application of this microarray to the study of mollusk gametogenesis should provide a better understanding of the key factors involved in sex differentiation and the regulation of oyster reproduction. METHODOLOGY/PRINCIPAL FINDINGS: Gene expression was studied in gonads of oysters cultured over a yearly reproductive cycle. Principal component analysis and hierarchical clustering showed a significant divergence in gene expression patterns of males and females coinciding with the start of gonial mitosis. ANOVA analysis of the data revealed 2,482 genes differentially expressed during the course of males and/or females gametogenesis. The expression of 434 genes could be localized in either germ cells or somatic cells of the gonad by comparing the transcriptome of female gonads to the transcriptome of stripped oocytes and somatic tissues. Analysis of the annotated genes revealed conserved molecular mechanisms between mollusks and mammals: genes involved in chromatin condensation, DNA replication and repair, mitosis and meiosis regulation, transcription, translation and apoptosis were expressed in both male and female gonads. Most interestingly, early expressed male-specific genes included bindin and a dpy-30 homolog and female-specific genes included foxL2, nanos homolog 3, a pancreatic lipase related protein, cd63 and vitellogenin. Further functional analyses are now required in order to investigate their role in sex differentiation in oysters

Paralytic Toxins Accumulation and Tissue Expression of α-Amylase and Lipase Genes in the Pacific Oyster Crassostrea gigas Fed with the Neurotoxic Dinoflagellate Alexandrium catenella

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Mohamed Laabir

2012-11-01

Full Text Available The pacific oyster Crassostrea gigas was experimentally exposed to the neurotoxic Alexandrium catenella and a non-producer of PSTs, Alexandrium tamarense (control algae, at concentrations corresponding to those observed during the blooming period. At fixed time intervals, from 0 to 48 h, we determined the clearance rate, the total filtered cells, the composition of the fecal ribbons, the profile of the PSP toxins and the variation of the expression of two α-amylase and triacylglecerol lipase precursor (TLP genes through semi-quantitative RT-PCR. The results showed a significant decrease of the clearance rate of C. gigas fed with both Alexandrium species. However, from 29 to 48 h, the clearance rate and cell filtration activity increased only in oysters fed with A. tamarense. The toxin concentrations in the digestive gland rose above the sanitary threshold in less than 48 h of exposure and GTX6, a compound absent in A. catenella cells, accumulated. The α-amylase B gene expression level increased significantly in the time interval from 6 to 48 h in the digestive gland of oysters fed with A. tamarense, whereas the TLP gene transcript was significantly up-regulated in the digestive gland of oysters fed with the neurotoxic A. catenella. All together, these results suggest that the digestion capacity could be affected by PSP toxins.

Density and reproduction of the Queen Conch Eustrombus gigas (Mesogastropoda: Strombidae at Cabo Cruz, Desembarco del Granma National Park, Cuba Densidad y reproducción de la concha reina Eustrombus gigas (Mesogastropoda: Strombidae en Cabo Cruz, Parque Nacional Desembarco del Granma, Cuba

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Yuself R. Cala

2013-06-01

Full Text Available The queen conch Eustrombus gigas is an important fisheries resource in the Caribbean region. In Cuba Island the studies about this resource are very scarce and particularly in the Southeastern regions of the country. With the aim to get important fishery information about this gastropod, adult Queen Conch density and frequency of reproductive activity were evaluated in Cabo Cruz, Cuba, during 2009-2010. Data from three seasons were obtained (rainy, dry and cold fronts periods from three different areas: Farito, Guafe and Laguna. The highest density was observed in cold fronts season (468.5ind./ha and the lowest occurred during the dry season (268.5ind./ha. The highest density was reported at Laguna (520.4ind./ha and the lowest at Farito (290.9ind./ha. In total, 158 reproductive events were observed. The highest frequency was reported in rainy season (36%, followed by dry (9% and cold fronts (5% seasons. Reproductive behavior (mating and egg laying was related to temperature and photoperiod. Reproductive activity was observed during the whole year, which suggests the existence of an important Queen Conch reserve in the Southeastern region of Cuba and an apparently self-sufficient population for recruitment. From our results we may conclude that, the population’s sustainable exploitation is viable if the following management measures are observed: functional zoning within the area, rotation of fishing areas and a closed season. We recommend that the Laguna site should be protected as a reproduction zone and banned for fishing activities.El Eustrombus gigas es un recurso pesquero importante en la región del Caribe. En Cuba, los estudios acerca de este recurso son muy escasos y en la zona Sur-oriental del país son casi nulos. En este trabajo se evalúa la densidad de adultos y frecuencia de la evidencia reproductiva de Eustrombus gigas Linneus 1758 en Cabo Cruz, Cuba, en el periodo 2009-2010. Se obtuvieron datos de tres períodos (lluvias, seca

pH controls spermatozoa motility in the Pacific oyster (Crassostrea gigas

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Myrina Boulais

2018-03-01

Full Text Available Investigating the roles of chemical factors stimulating and inhibiting sperm motility is required to understand the mechanisms of spermatozoa movement. In this study, we described the composition of the seminal fluid (osmotic pressure, pH, and ions and investigated the roles of these factors and salinity in initiating spermatozoa movement in the Pacific oyster, Crassostrea gigas. The acidic pH of the gonad (5.82±0.22 maintained sperm in the quiescent stage and initiation of flagellar movement was triggered by a sudden increase of spermatozoa external pH (pHe when released in seawater (SW. At pH 6.4, percentage of motile spermatozoa was three times higher when they were activated in SW containing 30 mM NH4Cl, which alkalinizes internal pH (pHi of spermatozoa, compared to NH4Cl-free SW, revealing the role of pHi in triggering sperm movement. Percentage of motile spermatozoa activated in Na+-free artificial seawater (ASW was highly reduced compared to ASW, suggesting that change of pHi triggering sperm motility was mediated by a Na+/H+ exchanger. Motility and swimming speed were highest in salinities between 33.8 and 42.7‰ (within a range of 0 to 50 ‰, and pH values above 7.5 (within a range of 4.5 to 9.5.

Antimicrobial histones and DNA traps in invertebrate immunity: evidences in Crassostrea gigas.

Science.gov (United States)

Poirier, Aurore C; Schmitt, Paulina; Rosa, Rafael D; Vanhove, Audrey S; Kieffer-Jaquinod, Sylvie; Rubio, Tristan P; Charrière, Guillaume M; Destoumieux-Garzón, Delphine

2014-09-05

Although antimicrobial histones have been isolated from multiple metazoan species, their role in host defense has long remained unanswered. We found here that the hemocytes of the oyster Crassostrea gigas release antimicrobial H1-like and H5-like histones in response to tissue damage and infection. These antimicrobial histones were shown to be associated with extracellular DNA networks released by hemocytes, the circulating immune cells of invertebrates, in response to immune challenge. The hemocyte-released DNA was found to surround and entangle vibrios. This defense mechanism is reminiscent of the neutrophil extracellular traps (ETs) recently described in vertebrates. Importantly, oyster ETs were evidenced in vivo in hemocyte-infiltrated interstitial tissues surrounding wounds, whereas they were absent from tissues of unchallenged oysters. Consistently, antimicrobial histones were found to accumulate in oyster tissues following injury or infection with vibrios. Finally, oyster ET formation was highly dependent on the production of reactive oxygen species by hemocytes. This shows that ET formation relies on common cellular and molecular mechanisms from vertebrates to invertebrates. Altogether, our data reveal that ET formation is a defense mechanism triggered by infection and tissue damage, which is shared by relatively distant species suggesting either evolutionary conservation or convergent evolution within Bilateria. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Detection of Ostreid herpesvirus-1 microvariants in healthy Crassostrea gigas following disease events and their possible role as reservoirs of infection.

Science.gov (United States)

Evans, Olivia; Hick, Paul; Whittington, Richard J

2017-09-01

Ostreid herpesvirus-1 microvariants (OsHV-1) cause severe mortalities in farmed Crassostrea gigas in Europe, New Zealand and Australia. Outbreaks are seasonal, recurring in the warmer months of the year in endemic estuaries. The reference genotype and microvariant genotypes of OsHV-1 have been previously detected in the tissues of apparently healthy adult oysters naturally exposed to OsHV-1 in the field. However, the role of such oysters as reservoirs of infection for subsequent mortality outbreaks remains unclear. The aims of this study were: (1) to identify the optimal sample type to use for the detection of OsHV-1 DNA in apparently healthy C. gigas; and (2) to assess whether live C. gigas maintained on-farm after an OsHV-1 related mortality event remain infected and could act as a reservoir host for subsequent outbreaks. OsHV-1 DNA was detected in the hemolymph, gill, mantle, adductor muscle, gonad and digestive gland of apparently healthy adult oysters. The likelihood of detecting OsHV-1 DNA in hemolymph was equivalent to that in gill and mantle, but the odds of detecting OsHV-1 DNA in hemolymph and gill were more than 8 times that of adductor muscle. Gill had the highest viral loads. Compared to testing whole gill homogenates, testing snippets of the gill improved the detection of OsHV-1 DNA by about four fold. The prevalence of OsHV-1 in gill and mantle was highest after the first season of OsHV-1 exposure; it then declined to low or negligible levels in the same cohorts in subsequent seasons, despite repeated seasonal exposure in monitoring lasting up to 4years. The hemolymph of individually identified oysters was repeatedly sampled over 15months, and OsHV-1 prevalence declined over that time frame in the youngest cohort, which had been exposed to OsHV-1 for the first time at the start of that season. In contrast, the prevalence in two cohorts of older oysters, which had been exposed to OsHV-1 in prior seasons, was consistently low (<10%). Viral loads were

Literature review of giant gartersnake (Thamnophis gigas) biology and conservation

Science.gov (United States)

Halstead, Brian J.; Wylie, Glenn D.; Casazza, Michael L.

2015-08-03

This report reviews the available literature on giant gartersnakes (Thamnophis gigas) to compile existing information on this species and identify knowledge gaps that, if addressed, would help to inform conservation efforts for giant gartersnakes.  Giant gartersnakes comprise a species of semi-aquatic snake precinctive to wetlands in the Central Valley of California.  The diversion of surface water and conversion of wetlands to agricultural and other land uses resulted in the loss of more than 90 percent of natural giant gartersnake habitats.  Because of this habitat loss, giant gartersnakes are now listed by the United States and California Endangered Species Acts as Threatened.  Most extant populations occur in the rice-growing regions of the Sacramento Valley, which comprises the northern portion of the giant gartersnake’s former range.  The huge demand for water in California for agriculture, industry, recreation, and other human consumption, combined with periodic severe drought, places remaining giant gartersnake habitats at increased risk of degradation and loss.  This literature review summarizes the available information on giant gartersnake distribution, habitat relations, behavior, demography, and other aspects of its biology relevant to conservation.  This information is then compiled into a graphical conceptual model that indicates the importance of different aspects of giant gartersnake biology for maintaining positive population growth, and identifies those areas for which important information relevant for conservation is lacking.  Directing research efforts toward these aspects of giant gartersnake ecology will likely result in improvements to conserving this unique species while meeting the high demands for water in California.

Cobalt-, zinc- and iron-bound forms of adenylate kinase (AK) from the sulfate-reducing bacterium Desulfovibrio gigas: purification, crystallization and preliminary X-ray diffraction analysis

International Nuclear Information System (INIS)

Kladova, A. V.; Gavel, O. Yu.; Mukhopaadhyay, A.; Boer, D. R.; Teixeira, S.; Shnyrov, V. L.; Moura, I.; Moura, J. J. G.; Romão, M. J.; Trincão, J.; Bursakov, S. A.

2009-01-01

Adenylate kinase (AK) from D. gigas was purified and crystallized in three different metal-bound forms: Zn 2+ –AK, Co 2+ –AK and Fe 2+ –AK. Adenylate kinase (AK; ATP:AMP phosphotransferase; EC 2.7.4.3) is involved in the reversible transfer of the terminal phosphate group from ATP to AMP. AKs contribute to the maintenance of a constant level of cellular adenine nucleotides, which is necessary for the energetic metabolism of the cell. Three metal ions, cobalt, zinc and iron(II), have been reported to be present in AKs from some Gram-negative bacteria. Native zinc-containing AK from Desulfovibrio gigas was purified to homogeneity and crystallized. The crystals diffracted to beyond 1.8 Å resolution. Furthermore, cobalt- and iron-containing crystal forms of recombinant AK were also obtained and diffracted to 2.0 and 3.0 Å resolution, respectively. Zn 2+ –AK and Fe 2+ –AK crystallized in space group I222 with similar unit-cell parameters, whereas Co 2+ –AK crystallized in space group C2; a monomer was present in the asymmetric unit for both the Zn 2+ –AK and Fe 2+ –AK forms and a dimer was present for the Co 2+ –AK form. The structures of the three metal-bound forms of AK will provide new insights into the role and selectivity of the metal in these enzymes

Abundancia y distribución de larvas de Strombus gigas (Mesogastropoda: Strombidae durante el período reproductivo de la especie en el Caribe Mexicano

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José Francisco Chávez Villegas

2012-03-01

Full Text Available El caracol rosa (Strombus gigas, Linnaeus, 1758 es una especie de importancia económica en el Mar Caribe, por lo cual, en la década de 1980 representó la segunda pesquería después de la langosta espinosa, razón por la que actualmente se encuentra en estado de sobrepesca. Con el objetivo de determinar la variación en la abundancia de larvas durante la época reproductiva, cuatro localidades del Caribe Mexicano “CM” (México: Puerto Morelos, Sian Ka’an, Mahahual; Belice: San Pedro fueron muestreadas. Mensualmente, de mayo a octubre del 2008, se realizaron arrastres de plancton en cada localidad empleando una red cónica (300μm. Temperatura (°C, salinidad (ppm y oxígeno disuelto (mg L-1 fueron registrados para cada sitio. Una densidad media larval de 0.34±0.87 larvas•10m-3 fue registrada entre localidades, con un pico de abundancia entre agosto y septiembre (0.82±1.00 y 0.76±1.68 larvas 10m-3, respectivamente. La densidad larval tuvo una correlación del 60% con la salinidad (r=0.6063, p0.05. El 100% de las larvas capturadas corresponden al estadio I definido por Davis et al (1993, mostrando actividad reproductiva local, de esta manera, se considera que los sitios muestreados en el CM son fuente de larvas para la especie S. gigas.

Nitrogenous compounds changes in emersed oysters: Crassostrea gigas

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Rafrafi, Sarra; Uglow, Roger F.

2009-01-01

The effects of emersing oysters ( Crassostrea gigas) for up to 66 h at 4 °C under humid air and nitrogen atmospheres were studied. A significant, gradual body mass loss occurred under nitrogen (8.36 ± 0.85% final weight loss) but no significant loss occurred under humid air (4.92 ± 2.67% final weight loss). Emersion duration and the mantle cavity fluid (MCF) total ammonia (TA) concentration showed a positive, linear relationship ( r2 = 0.73 and 0.74 under humid air and N 2, respectively). The MCF TA and trimethylamine (TMA) contents were also positively related ( r2 = 0.64 and 0.69 under humid air and N 2, respectively). Proline was the most abundant soft tissue free amino acid (71.07 ± 11.8%) in the control group and its concentration did not change significantly under either treatment. The concentration of alanine and valine increased significantly only under humid air. Under N 2, the concentrations of valine and lysine increased significantly and aspartate decreased significantly. Succinate showed a large increase during the first 6 h of emersion under both treatments but significantly more was accumulated in the N 2-exposed group (4.2-fold increase and 8.1-fold increase for the humid air- and N 2-exposed groups, respectively). The succinate concentration difference remained higher in the N 2-treated groups but, in the final 24 h, levels decreased again (quadratic regressions of r2 = 0.97 and 0.95 under humid air and N 2, respectively). Although the trend of succinate accumulation was similar under both treatments, the groups held under nitrogen did not gape (whereas those under humid air did). It is concluded that the implications of gaping behaviour on succinate accumulation in the initial hours of emersion have considerable ecological significance for oysters which occupy habitats in which they may become emersed for some hours naturally. Gaping behaviour also has considerable commercial implications because emersion occurs frequently during the marketing

Comparative transcriptome analysis of two oysters, Crassostrea gigas and Crassostrea hongkongensis provides insights into adaptation to hypo-osmotic conditions.

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Xuelin Zhao

Full Text Available Environmental salinity creates a key barrier to limit the distribution of most aquatic organisms. Adaptation to osmotic fluctuation is believed to be a factor facilitating species diversification. Adaptive evolution often involves beneficial mutations at more than one locus. Bivalves hold great interest, with numerous species living in waters, as osmoconformers, who maintain the osmotic pressure balance mostly by free amino acids. In this study, 107,076,589 reads from two groups of Crassostrea hongkongensis were produced and the assembled into 130,629 contigs. Transcripts putatively involved in stress-response, innate immunity and cell processes were identified according to Gene ontology and KEGG pathway analyses. Comparing with the transcriptome of C. gigas to characterize the diversity of transcripts between species with osmotic divergence, we identified 182,806 high-quality single nucleotide polymorphisms (SNPs for C. hongkongensis, and 196,779 SNPs for C. gigas. Comparison of 11,602 pairs of putative orthologs allowed for identification of 14 protein-coding genes that experienced strong positive selection (Ka/Ks>1. In addition, 45 genes that may show signs of moderate positive selection (1 ≥ Ka/Ks>0.5 were also identified. Based on Ks ratios and divergence time between the two species published previously, we estimated a neutral transcriptome-wide substitution mutation rate of 1.39 × 10(-9 per site per year. Several genes were differentially expressed across the control and treated groups of each species. This is the first time to sequence the transcriptome of C. hongkongensis and provide the most comprehensive transcriptomic resource available for it. The increasing amount of transcriptome data on Crassostrea provides an excellent resource for phylogenetic analysis. A large number of SNPs identified in this work are expected to provide valuable resources for future marker and genotyping assay development. The analysis of natural

Trojan Horse Strategy for Non-invasive Interference of Clock Gene in the Oyster Crassostrea gigas.

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Payton, Laura; Perrigault, Mickael; Bourdineaud, Jean-Paul; Marcel, Anjara; Massabuau, Jean-Charles; Tran, Damien

2017-08-01

RNA interference is a powerful method to inhibit specific gene expression. Recently, silencing target genes by feeding has been successfully carried out in nematodes, insects, and small aquatic organisms. A non-invasive feeding-based RNA interference is reported here for the first time in a mollusk bivalve, the pacific oyster Crassostrea gigas. In this Trojan horse strategy, the unicellular alga Heterocapsa triquetra is the food supply used as a vector to feed oysters with Escherichia coli strain HT115 engineered to express the double-stranded RNA targeting gene. To test the efficacy of the method, the Clock gene, a central gene of the circadian clock, was targeted for knockout. Results demonstrated specific and systemic efficiency of the Trojan horse strategy in reducing Clock mRNA abundance. Consequences of Clock disruption were observed in Clock-related genes (Bmal, Tim1, Per, Cry1, Cry2, Rev.-erb, and Ror) and triploid oysters were more sensitive than diploid to the interference. This non-invasive approach shows an involvement of the circadian clock in oyster bioaccumulation of toxins produced by the harmful alga Alexandrium minutum.

Metals concentrations in sediments and oyster Crassostrea gigas from La Pitahaya lagoon, Sinaloa, NW Mexico

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Luna Varela, R.; Muñoz Sevilla, N.; Campos Villegas, L.; Rodriguez Espinosa, P.; Gongora Gomez, A.; MP, J.

2013-05-01

This present study was performed in a culture of Crassostrea gigas in La Pitahaya, Sinaloa, México. The main objective is to identify the enrichment pattern of trace elements (Cu, Cd, Cr, Ni, Pb, Zn, Hg, As, V) also was determine concentrations thereof in oyster. Four sampling sites were selected, two smaller channels which connect the lagoon directly , the region of culture and connection with the sea ; and each sampling consisted of 4 sample sediments and 50 oysters of commercial size per mounth . Concentrations of trace metals were determined using atomic absorption spectrophotometry (AAS). The higher concentration of elements in certain samples clearly suggests that they are directly fed by the smaller channels which connect the lagoon directly. These small channels often carry the contaminants which are absorbed and deposited in the sediments. The results were also compared with the Effect Range Low (ERL) and Effect Range Medium (ERM) of NOAA and it indicates that Ni is above the ERL values. Cadmium, lead, chrome and copper concentrations exceeded the limits permissible of bivalbe mollusks established by the sanitary regulations

Molecular evidence of the protozoan parasite Marteilia refringens in Crassostrea gigas and Crassostrea corteziensis from the Gulf of California

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José Manuel Grijalva-Chon

2015-09-01

Full Text Available The search for exotic pathogens related to the outbreaks and in surveillance samplings of the Mexican oyster farms, is a recent activity achieved by academic institutions and state committees for Aquatic Animal Health, with remarkable results. In samples of Crassostrea gigas collected through December 2009, January 2010 and November 2010, and of C. corteziensis in September 2011, the protozoan Marteilia refringens was detected for the first time in the Gulf of California. The carrier oysters were from cultures without abnormal mortality rates, whereby, the use of histology, in situ hybridization and transmission electron microscopy studies are necessary to determine if M. refringens has become established in the Gulf of California oyster cultures. Detection of M. refringens is of great concern to the global oyster farming industry.

A COZINHA DE FUSÃO ENCONTRA O RIO: peixes nativos amazônicos como alternativa para a culinária japonesa

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Hellen Christina de Almeida Kato

2016-09-01

Full Text Available A culinária japonesa, desde a década de 80, se expande no Brasil, conservando técnicas e ingredientes de sua origem combinadas a inovações relacionadas à culinária americana, sendo assim, bastante dependente de ingredientes importados. Através da cozinha de fusão, esse trabalho sugere o uso de espécies de peixes nativos cultivados na Amazônia como alternativa gastronômica para esse mercado. Foi realizado um experimento envolvendo chefs de cozinha amazônica e japonesa desenvolvendo seis preparações a base de pirarucu e tambaqui. Estas foram avaliadas por um painel treinado de 24 profissionais da aqüicultura e gastronomia japonesa. Avaliou-se a aceitação e seus atributos utilizando uma escala hedônica com aplicação de questionário estruturado de intenção de compra. Todos os pratos obtiveram ampla aceitação, tendo destaque o Teppan de pirarucu. Conclui-se que o uso dos peixes nativos de cultivo da Amazônia, tambaqui e pirarucu, é uma alternativa viável para a inovação da gastronomia japonesa no Brasil, através da culinária de fusão. Palavras-chave: Amazônia; Cozinha fusion; Peixes de água doce.

Parental diuron-exposure alters offspring transcriptome and fitness in Pacific oyster Crassostrea gigas.

Science.gov (United States)

Bachère, Evelyne; Barranger, Audrey; Bruno, Roman; Rouxel, Julien; Menard, Dominique; Piquemal, David; Akcha, Farida

2017-08-01

One of the primary challenges in ecotoxicology is to contribute to the assessment of the ecological status of ecosystems. In this study, we used Pacific oyster Crassostrea gigas to explore the effects of a parental exposure to diuron, a herbicide frequently detected in marine coastal environments. The present toxicogenomic study provides evidence that exposure of oyster genitors to diuron during gametogenesis results in changes in offspring, namely, transcriptomic profile alterations, increased global DNA methylation levels and reduced growth and survival within the first year of life. Importantly, we highlighted the limitations to identify particular genes or gene expression signatures that could serve as biomarkers for parental herbicide-exposure and further for multigenerational and transgenerational effects of specific chemical stressors. By analyzing samples from two independent experiments, we demonstrated that, due to complex confounding effects with both tested solvent vehicles, diuron non-specifically affected the offspring transcriptome. These original results question the potential development of predictive genomic tools for detecting specific indirect impacts of contaminants in environmental risk assessments. However, our results indicate that chronic environmental exposure to diuron over several generations may have significant long term impacts on oyster populations with adverse health outcomes. Copyright © 2017. Published by Elsevier Inc.

Nuclear microprobe and Raman investigation of the chemistry of the shell of the pacific oyster, Crassostrea gigas

International Nuclear Information System (INIS)

Markwitz, A.; Gauldie, R.W.; Pithie, J.; Sharma, S.K.; Jamieson, D.J.

1999-01-01

High-resolution nuclear microscopy was used to study the layered structure in the shell of the pacific oyster, Crassostrea gigas. In cross section, the layers appear as opaque white zones and clearer translucent zones. Raman spectroscopy indicates that the zones consist of alternating layers of the aragonite and calcite morphs of calcium carbonate, the mineral constituent of the shell. The chemistry of the shell varies from individual to individual but generally the predominant metal ion is Ca, with varying amounts of Si, Cl, Cr, Mn, Fe, Zn, Sb, Ni, Fe, As and Sr. Two dimensional maps of these major, minor and trace elements were measured in many shells with nuclear microscopy to identify the patterns of Zn and Sr deposition reflecting the calcite and aragonite layers. The significant difference in the patterns identified by ion beam analyses are possibly a result of isostructural exclusion of these metal ions between the different aragonite and calcite polymorphic forms of calcium carbonate. (author)

An evaluation of the efficacy of using environmental DNA (eDNA) to detect giant gartersnakes (Thamnophis gigas)

Science.gov (United States)

Halstead, Brian J.; Wood, Dustin A.; Bowen, Lizabeth; Waters, Shannon C.; Vandergast, Amy G.; Ersan, Julia S.; Skalos, Shannon M.; Casazza, Michael L.

2017-09-28

Detecting populations of rare or cryptic species is essential for their conservation. For species like giant gartersnakes (Thamnophis gigas), conventional survey methods can be expensive and inefficient. These sampling difficulties might be overcome by modern techniques that detect deoxyribonucleic acid (DNA) shed by organisms into the environment (eDNA). We evaluated the efficacy of detecting giant gartersnake eDNA in water samples from the laboratory and at locations with known giant gartersnake populations in the Sacramento Valley of California, and failed to detect giant gartersnake DNA in most laboratory and all field samples. Aspects of giant gartersnake biology—such as highly keratinized skin and spending extensive time in the terrestrial environment, as well as hot, sunny, and turbid conditions in wetlands and canals of the Sacramento Valley—likely contributed to low detection probabilities. Although detection of eDNA shows promise under many conditions, further development is needed before sampling for eDNA is a viable option for detecting giant gartersnake populations.

Effect of Bovine Plasma Protein on Autolysis and Gelation of Protein Extracted from Giant Squid (Dosidicus gigas Mantle

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Laura Raquel Marquez-Alvarez

2015-01-01

Full Text Available The effect of bovine plasma protein (BPP on the inhibition of autolytic activity and its effect on the gelling properties of a protein concentrate (PC obtained from jumbo squid (Dosidicus gigas mantle were investigated. Sols and gels were prepared from the PC by adding different amounts of BPP (0, 1, and 2%. Dynamic oscillatory measurements indicated that systems with 1% BPP had a higher elastic modulus (G′, in which hydrophobic interactions were favored. Concerning the technological and textural quality of the gels, BPP caused a greater water holding capacity (WHC, force, cohesiveness, and elasticity, probably due to improvement of the electrostatic and hydrophobic interactions during gel formation. Scanning electron microscopy (SEM allowed visualization of the formation of more rigid and ordered gels with less porosity when BPP was added. Therefore, the addition of BPP improved the gelling capacity of proteins extracted from giant squid.

Effects of a bio-invasion of the Pacific oyster, Crassostrea gigas (Thunberg, 1793) in five shallow water habitats in Scandinavia

DEFF Research Database (Denmark)

Mortensen, Stein; Bodvin, Torjan; Strand, Åsa

2017-01-01

Management of invasive species is addressed in both national and international regulations regarding the protection of marine habitats and biodiversity and in regulations of aquaculture. The geographical range of the invasive Pacific oyster, Crassostrea gigas, is expanding, both through human...... mediated vectors and by natural dispersal. The species is now spreading in Scandinavia. In order to optimize the management of the oyster, including targeted monitoring and mitigation activities, knowledge on the present and future distribution and impact on the ecosystem is important. The development...... of habitats where Pacific oysters are found in Scandinavia (Low energy rock, Littoral sand and mudflats, Littoral biogenic reefs, Sublittoral sand and Sublittoral biogenic reefs) to a predicted development, thereafter assessed in relation to impact on the habitats. The assessment was done as a function...

Biodisponibilidade de zinco de ostras (Crassostrea gigas cultivadas em fl orianópolis / SC
bioavailability of oysters (crassostrea gigas cultivated in Florianopólis / SC

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R. CAETANO

2010-05-01

Full Text Available

O objetivo deste trabalho foi avaliar a biodisponibilidade do zinco presente nas ostras Crassostrea gigas cultivadas na região de Florianópolis, SC em ratas adultas (Rattus norvegicus, pois nessa região as ostras são fontes de zinco biodisponível. Foi realizado ensaio biológico durante 49 dias, sendo que os 24 animais foram distribuídos em três grupos: G1: dieta controle (AIN-93M, G2: dieta isenta de zinco (AIN-93M modifi cada; G3: dieta isenta de zinco e acrescida de ostras. Ao fi nal do experimento foram coletados os fêmures dos animais para análise do teor de zinco, por espectrofotometria de absorção atômica. As ostras in natura apresentaram 4,38mg% de zinco. Quanto ao teor de zinco no fêmur, os grupos G1 (246,62 ± 9,97μg Zn/g osso e G3 (221,41 ± 15,80 μg apresentaram elevadas concentrações (p < 0,05 quando comparados ao grupo G0 (155,0 ± 32,80 μg e G2 (110,12 ± 32,88 μg.

Induction of Symbiosis in Tridacna crocea (C. Bivalvia, F. Tridacnidae Using Zooxanthellae from T. gigas and from T. crocea: Effects on Clam Survival and Growth

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S. Suzanne Mingoa-Licuanan

2000-12-01

Full Text Available Survival and growth of post-metamorphic Tridacna crocea juveniles were improved by inducing symbiosis with fresh or cloned zooxanthellae (Tg10 derived from T. gigas. Although clam growth was best with Tc4, survival was also poorest. Symbiosis with specific zooxanthellae was established at the pediveliger stage, with reinfection a few days after. It is suggested that while survival and growth may be easily monitored and may be used as indicators of good performance of a functional holobiont, other phenotypic traits such as resistance to disease, bleaching, etc. may also be considered in evaluating the effectivity of the selected zooxanthellae.

Composición proximal y propiedades funcionales del surimi liofilizado de Dosidicus gigas “ calamar gigante”

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Armando Solari - Godiño

2017-01-01

Full Text Available El propósito de la investigación fue determinar la composición proximal y propiedades funcionales del surimi liofilizado de calamar gigante ( Dosidicus gigas . Se elaboró surimi a partir de calamar gigante y fue liofilizado hasta obtener surimi en polvo para evaluar sus características y prop iedades funcionales. El contenido de proteínas fue 58,7% y carbohidratos 30,5%. La solubilidad proteica en agua y sal (3% fueron 21,1% y 40,6% respectivamente, siendo estos valores superiores a surimi en polvo de especies comerciales. La capacidad de geli ficación fue 2,4% y la capacidad emulsificante fue 79,9% a una concentración del 1,0%. El color en la escala de Hunter fue L*: 91,5; a*: 0,5; b*:7,0. El surimi en polvo de calamar gigante fue considerado como un polvo proteico funcional debido a su conteni do porcentual proteico, y tuvieron buenas características tecnológicas y de gran potencial en la industria alimentaria .

Spatial and trophic preferences of jumbo squid Dosidicus gigas (D´Orbigny, 1835) in the central Gulf of California: ecological inferences using stable isotopes.

Science.gov (United States)

Trasviña-Carrillo, L D; Hernández-Herrera, A; Torres-Rojas, Y E; Galván-Magaña, F; Sánchez-González, A; Aguíñiga-García, S

2018-04-26

The jumbo squid Dosidicus gigas is a fishery resource of considerable economic and ecological importance in the Mexican Pacific. Studies on its habitat preferences are needed to understand recent fluctuations in the species' abundance and availability. Stable isotope analysis allows us to infer ecological aspects such as spatial distribution and trophic preferences. We used an isotope ratio mass spectrometer, automated for carbonate analysis, and coupled to an elemental analyzer, to determine the isotopic composition of statoliths (δ 18 O and δ 13 C values) and beaks (δ 13 C and δ 15 N values) from 219 individuals caught over two fishing seasons (2007 and 2009) off the coast of Santa Rosalía, in the central Gulf of California. We used these isotopic ratios to assess variation in spatial and trophic preferences by sex, size, and fishing season. In the 2009 group, we observed significant differences in statolith δ 13 C values and beak δ 13 C and δ 15 N values between males and females. Between size groups, we observed significant differences in statolith δ 18 O and δ 13 C values in 2007 and in beak δ 13 C and δ 15 N values during both seasons. Both seasons were characterized by high overlap in δ 18 O and δ 13 C values between sexes and in 2009 between size groups. We observed low trophic overlap between sexes in 2009 and between size groups during both seasons. The isotopic ratios from statoliths and beaks indicate that D. gigas has changed its spatial and trophic preferences, a shift that is probably related to changes in the species diet. This intraspecific variation in preferences could be related to characteristics such as size, which may influence squid distribution preferences. This article is protected by copyright. All rights reserved.

Bacterial survival following shock compression in the GigaPascal range

Science.gov (United States)

Hazael, Rachael; Fitzmaurice, Brianna C.; Foglia, Fabrizia; Appleby-Thomas, Gareth J.; McMillan, Paul F.

2017-09-01

The possibility that life can exist within previously unconsidered habitats is causing us to expand our understanding of potential planetary biospheres. Significant populations of living organisms have been identified at depths extending up to several km below the Earth's surface; whereas laboratory experiments have shown that microbial species can survive following exposure to GigaPascal (GPa) pressures. Understanding the degree to which simple organisms such as microbes survive such extreme pressurization under static compression conditions is being actively investigated. The survival of bacteria under dynamic shock compression is also of interest. Such studies are being partly driven to test the hypothesis of potential transport of biological organisms between planetary systems. Shock compression is also of interest for the potential modification and sterilization of foodstuffs and agricultural products. Here we report the survival of Shewanella oneidensis bacteria exposed to dynamic (shock) compression. The samples examined included: (a) a "wild type" (WT) strain and (b) a "pressure adapted" (PA) population obtained by culturing survivors from static compression experiments to 750 MPa. Following exposure to peak shock pressures of 1.5 and 2.5 GPa the proportion of survivors was established as the number of colony forming units (CFU) present after recovery to ambient conditions. The data were compared with previous results in which the same bacterial samples were exposed to static pressurization to the same pressures, for 15 minutes each. The results indicate that shock compression leads to survival of a significantly greater proportion of both WT and PA organisms. The significantly shorter duration of the pressure pulse during the shock experiments (2-3 μs) likely contributes to the increased survival of the microbial species. One reason for this can involve the crossover from deformable to rigid solid-like mechanical relaxational behavior that occurs for

Environmental concentrations of irgarol, diuron and S-metolachlor induce deleterious effects on gametes and embryos of the Pacific oyster, Crassostrea gigas.

Science.gov (United States)

Mai, Huong; Morin, Bénédicte; Pardon, Patrick; Gonzalez, Patrice; Budzinski, Hélène; Cachot, Jérôme

2013-08-01

Irgarol and diuron are the most representative "organic booster biocides" that replace organotin compounds in antifouling paints, and metolachlor is one of the most extensively used chloroacetamide herbicides in agriculture. The toxicity of S-metolachlor, irgarol and diuron was evaluated in Pacific oyster (Crassostrea gigas) gametes or embryos exposed to concentrations of pesticides ranging from 0.1× to 1000×, with 1× corresponding to environmental concentrations of the three studied pesticides in Arcachon Bay (France). Exposures were performed on (1) spermatozoa alone (2) oocytes alone and (3) both spermatozoa and oocytes, and adverse effects on fertilization success and offspring development were recorded. The results showed that the fertilizing capacity of spermatozoa was significantly affected after gamete exposure to pesticide concentrations as low as 1× of irgarol and diuron and 10× of metolachlor. The offspring obtained from pesticide-exposed spermatozoa displayed a dose-dependent increase in developmental abnormalities. In contrast, treating oocytes with pesticide concentrations up to 10× did not alter fertilization rate and offspring quality. However, a significant decline in fertilization success and increase in abnormal D-larvae prevalence were observed at higher concentrations 10× (0.1 μg L(-1)) for S-metolachlor and 100× for irgarol (1.0 μg L(-1)) and diuron (4.0 μg L(-1)). Irgarol, diuron and S-metolachlor also induced a dose-dependent increase in abnormal D-larvae prevalence when freshly fertilized embryos were treated with pesticide concentrations as low as concentration of 1× (0.01 μg L(-1) for irgarol or S-metolachlor, and 0.04 μg L(-1) for diuron). The two bioassays on C. gigas spermatozoa and embryos displayed similar sensitivities to the studied pesticides while oocytes were less sensitive. Diuron, irgarol and S-metolachlor induced spermiotoxicity and embryotoxicity at environmentally relevant concentrations and therefore might be

Expression of a natural antisense transcript of Cg-Foxl2 during the gonadic differentiation of the oyster Crassostrea gigas: first demonstration in the gonads of a lophotrochozoa species.

Science.gov (United States)

Santerre, C; Sourdaine, P; Martinez, A-S

2012-01-01

In the oyster Crassostrea gigas, a successive hermaphrodite, Cg-Foxl2, an ortholog of Foxl2, is suspected to be involved in vitellogenesis or female sex determination. The existence of a natural antisense transcript (NAT) of this factor has been suspected in gonads but needs to be confirmed to better understand the early events of the gonadic differentiation. The occurrence of this NAT was studied by orientation-specific RT-PCR. The NAT and its mRNA expressions were investigated during the development and in adults by real-time PCR and in situ hybridization. The presence of stable in vivo RNA-RNA duplexes was also explored by RNase protection-based approach. This work is the first evidence of characterization of a NAT in the gonads of mollusks and Lophotrochozoa. This NAT named Cg-Foxl2os is supposed to be polyadenylated and forms RNA-RNA duplexes with its mRNA. Cg-Foxl2os is significantly more expressed than Cg-Foxl2 in 2-month-old spats and in mature males. It is co-localized with the mRNA in the cytoplasm of spermatogonia and spermatocytes. The results of this study demonstrate the existence of a NAT of Cg-Foxl2 in the gonads of C. gigas. It may regulate its mRNA expression through formation of cytoplasmic RNA-RNA duplexes during the oyster gonadic differentiation. Copyright © 2012 S. Karger AG, Basel.

Ostreid herpesvirus 1 infection among Pacific oyster (Crassostrea gigas) Spat: relevance of water temperature to virus replication and circulation prior to the onset of mortality.

Science.gov (United States)

Renault, Tristan; Bouquet, Anne Lise; Maurice, Julien-Thomas; Lupo, Coralie; Blachier, Philippe

2014-09-01

A number of bivalve species worldwide, including the Pacific oyster, Crassostrea gigas, have been affected by mass mortality events associated with herpesviruses, resulting in significant losses. A particular herpesvirus was purified from naturally infected larval Pacific oysters, and its genome was completely sequenced. This virus has been classified as Ostreid herpesvirus 1 (OsHV-1) within the family Malacoherpesviridae. Since 2008, mass mortality outbreaks among C. gigas in Europe have been related to the detection of a variant of OsHV-1 called μVar. Additional data are necessary to better describe mortality events in relation to environmental-parameter fluctuations and OsHV-1 detection. For this purpose, a single batch of Pacific oyster spat was deployed in 4 different locations in the Marennes-Oleron area (France): an oyster pond ("claire"), a shellfish nursery, and two locations in the field. Mortality rates were recorded based on regular observation, and samples were collected to search for and quantify OsHV-1 DNA by real-time PCR. Although similar massive mortality rates were reported at the 4 sites, mortality was detected earlier in the pond and in the nursery than at both field sites. This difference may be related to earlier increases in water temperature. Mass mortality was observed among oysters a few days after increases in the number of PCR-positive oysters and viral-DNA amounts were recorded. An initial increment in the number of PCR-positive oysters was reported at both field sites during the survey in the absence of significant mortality. During this period, the water temperature was below 16°C. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Description of plastic remains found in the stomach contents of the jumbo squid Dosidicus gigas landed in Ecuador during 2014.

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Rosas-Luis, Rigoberto

2016-12-15

Squids are active and opportunistic predators that feed on a wide range of prey. Their active movements in the water column and their voracity promote a high consumption of food. In the pelagic environment off Ecuador, marine pollution is characterized by plastic debris with a mainland origin, including plastics trash of fishing gears. The objective of this work was to describe the presence of plastic remains in the stomach contents of Dosidicus gigas caught off the coast of Ecuador. Results demonstrated that 12% of the stomachs contained plastic remains. These plastics were identified as multifilament of polyethylene lines and polyvinyl chloride remains. Findings of this work could be related to an increase in the discharge of solid materials in the water column, increasing the probability to be ingested by the jumbo squid. Copyright © 2016 Elsevier Ltd. All rights reserved.

Probing for heavy element impurities in the shell of the Pacific oyster, Crassostrea gigas, with nuclear microscopy

International Nuclear Information System (INIS)

Markwitz, A.; Barry, B.; Gauldie, R.W.; Roberts, R.D.

2003-01-01

Nuclear microscopy was performed on shells of the Pacific oyster, Crassostrea gigas, to probe for heavy element impurities. For the studies 14 shells from the Auckland and the Marlborough Sounds region were chosen. In sections, the shells appear as opaque with white and grey zones, which are related to alternating layers of calcite and aragonite. Raster scans with 2.5 MeV protons over the sections (scan area 5 x 5 mm) were used in the experiment to measure trace elements in the ppm region using proton induced X-ray spectroscopy. Two dimensional maps and line scans revealed the presence of bromine in all shells investigated. Bromine was found to be related with the pattern of calcium. Hot spots of iron proved to be a common feature in the shells as well. In some shells, copper and zinc were also measured in hot spots of a few micrometers in diameter. Spatially resolved results on the micrometer level indicate the usefulness of nuclear microscopy for the detection of heavy elements in shells of the Pacific oyster

Stereological estimation of surface area and barrier thickness of fish gills in vertical sections.

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Da Costa, Oscar T F; Pedretti, Ana Carolina E; Schmitz, Anke; Perry, Steven F; Fernandes, Marisa N

2007-01-01

Previous morphometric methods for estimation of the volume of components, surface area and thickness of the diffusion barrier in fish gills have taken advantage of the highly ordered structure of these organs for sampling and surface area estimations, whereas the thickness of the diffusion barrier has been measured orthogonally on perpendicularly sectioned material at subjectively selected sites. Although intuitively logical, these procedures do not have a demonstrated mathematical basis, do not involve random sampling and measurement techniques, and are not applicable to the gills of all fish. The present stereological methods apply the principles of surface area estimation in vertical uniform random sections to the gills of the Brazilian teleost Arapaima gigas. The tissue was taken from the entire gill apparatus of the right-hand or left-hand side (selected at random) of the fish by systematic random sampling and embedded in glycol methacrylate for light microscopy. Arches from the other side were embedded in Epoxy resin. Reference volume was estimated by the Cavalieri method in the same vertical sections that were used for surface density and volume density measurements. The harmonic mean barrier thickness of the water-blood diffusion barrier was calculated from measurements taken along randomly selected orientation lines that were sine-weighted relative to the vertical axis. The values thus obtained for the anatomical diffusion factor (surface area divided by barrier thickness) compare favourably with those obtained for other sluggish fish using existing methods.

Role of dissolved and particulate cadmium in the accumulation of cadmium in cultured oysters (Crassostrea gigas)

Energy Technology Data Exchange (ETDEWEB)

Lekhi, Priyanka [Department of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z4 (Canada)], E-mail: anka.lekhi@ubc.ca; Cassis, D. [Department of Earth and Ocean Sciences, University of British Columbia, Vancouver, BC V6T 1Z4 (Canada); Pearce, C.M. [Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC V9T 6N7 (Canada); Ebell, N. [Odyssey Shellfish Ltd., Nanoose Bay, BC V0R 9G0 (Canada); Maldonado, M.T. [Department of Earth and Ocean Sciences, University of British Columbia, Vancouver, BC V6T 1Z4 (Canada); Orians, K.J. [Department of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z4 (Canada); Department of Earth and Ocean Sciences, University of British Columbia, Vancouver, BC V6T 1Z4 (Canada)

2008-04-15

Pacific oysters (Crassostrea gigas) collected on the coast of British Columbia, Canada have occasionally shown cadmium (Cd) concentrations at or above 2 {mu}g g{sup -1} (wet weight), which has resulted in the loss of some international markets. This study investigated the source and transfer of Cd to oysters by focusing on the role of dissolved and particulate Cd in seawater. Parameters monitored for 1 year at two oyster farm sites on Vancouver Island included: oyster tissue mass and shell length, Cd in oysters, dissolved Cd, particulate Cd, temperature and salinity. Results show that dissolved Cd was the main source of Cd to the oysters and that Cd was mainly concentrated in the gut tissues. A seasonal trend was observed in Cd in oysters, in which levels were lowest during periods of higher temperatures. Results also indicate that the local oceanographic inputs and sediment diagenesis directly affect dissolved Cd and thereby influence the Cd levels in oysters. Particulate matter was not found to be a source of Cd in oysters, and was actually negatively correlated. This was likely due to the uptake of dissolved Cd by phytoplankton and the effect of phytoplankton on oyster tissue mass.

Role of dissolved and particulate cadmium in the accumulation of cadmium in cultured oysters (Crassostrea gigas)

International Nuclear Information System (INIS)

Lekhi, Priyanka; Cassis, D.; Pearce, C.M.; Ebell, N.; Maldonado, M.T.; Orians, K.J.

2008-01-01

Pacific oysters (Crassostrea gigas) collected on the coast of British Columbia, Canada have occasionally shown cadmium (Cd) concentrations at or above 2 μg g -1 (wet weight), which has resulted in the loss of some international markets. This study investigated the source and transfer of Cd to oysters by focusing on the role of dissolved and particulate Cd in seawater. Parameters monitored for 1 year at two oyster farm sites on Vancouver Island included: oyster tissue mass and shell length, Cd in oysters, dissolved Cd, particulate Cd, temperature and salinity. Results show that dissolved Cd was the main source of Cd to the oysters and that Cd was mainly concentrated in the gut tissues. A seasonal trend was observed in Cd in oysters, in which levels were lowest during periods of higher temperatures. Results also indicate that the local oceanographic inputs and sediment diagenesis directly affect dissolved Cd and thereby influence the Cd levels in oysters. Particulate matter was not found to be a source of Cd in oysters, and was actually negatively correlated. This was likely due to the uptake of dissolved Cd by phytoplankton and the effect of phytoplankton on oyster tissue mass

Studies on omnidirectional enhancement of giga-hertz radiation by sub-wavelength plasma modulation

Science.gov (United States)

Fanrong, KONG; Qiuyue, NIE; Shu, LIN; Zhibin, WANG; Bowen, LI; Shulei, ZHENG; Binhao, JIANG

2018-01-01

The technology of radio frequency (RF) radiation intensification for radio compact antennas based on modulation and enhancement effects of sub-wavelength plasma structures represents an innovative developing strategy. It exhibits important scientific significance and promising potential of broad applications in various areas of national strategic demands, such as electrical information network and microwave communication, detection and control technology. In this paper, laboratory experiments and corresponding analyses have been carried out to investigate the modulation and enhancement technology of sub-wavelength plasma structure on the RF electromagnetic radiation. An application focused sub-wavelength plasma-added intensification up to ∼7 dB higher than the free-space radiation is observed experimentally in giga-hertz (GHz) RF band. The effective radiation enhancement bandwidth covers from 0.85 to 1.17 GHz, while the enhanced electromagnetic signals transmitted by sub-wavelength plasma structures maintain good communication quality. Particularly, differing from the traditional RF electromagnetic radiation enhancement method characterized by focusing the radiation field of antenna in a specific direction, the sub-wavelength plasma-added intensification of the antenna radiation presents an omnidirectional enhancement, which is reported experimentally for the first time. Corresponding performance characteristics and enhancement mechanism analyses are also conducted in this paper. The results have demonstrated the feasibility and promising potential of sub-wavelength plasma modulation in application focused RF communication, and provided the scientific basis for further research and development of sub-wavelength plasma enhanced compact antennas with wide-range requests and good quality for communication.

A 1-year investigation of the parasite Haplosporidium nelsoni (MSX) in the Pacific oyster Crassostrea gigas from Dayaowan Bay, China.

Science.gov (United States)

Wang, Zhongwei; Lu, Xin; Liang, Yubo

2010-06-01

The infection prevalence of the protozoan parasite Haplosporidium nelsoni (MSX) in Pacific oysters (Crassostrea gigas), collected from Dayaowan Bay on the north coast of the Yellow Sea, China, was investigated in 2007. The traditional histological method of diagnosing H. nelsoni infection in oysters was compared to that of polymerase chain reaction (PCR). Histology and the first PCR analysis detected infection in 21 (a total of 240 oysters) (8.75%) oysters, and the second PCR revealed infection in 26 oysters (10.83%). Only local or epithelial infections were found; no systemic infections were detected. Infection by H. nelsoni mostly occurred from April through October, and the monthly prevalence ranged from 5% to 25%, with a peak in August. These results suggest that the prevalence of the parasite is low in Dayaowan Bay. The prevalence of H. nelsoni is thought to be controlled in some way by temperature and salinity.

Ostreid herpesvirus type 1 replication and host response in adult Pacific oysters, Crassostrea gigas.

Science.gov (United States)

Segarra, Amélie; Baillon, Laury; Tourbiez, Delphine; Benabdelmouna, Abdellah; Faury, Nicole; Bourgougnon, Nathalie; Renault, Tristan

2014-10-08

Since 2008, massive mortality outbreaks associated with OsHV-1 detection have been reported in Crassostrea gigas spat and juveniles in several countries. Nevertheless, adult oysters do not demonstrate mortality in the field related to OsHV-1 detection and were thus assumed to be more resistant to viral infection. Determining how virus and adult oyster interact is a major goal in understanding why mortality events are not reported among adult Pacific oysters. Dual transcriptomics of virus-host interactions were explored by real-time PCR in adult oysters after a virus injection. Thirty-nine viral genes and five host genes including MyD88, IFI44, IkB2, IAP and Gly were measured at 0.5, 10, 26, 72 and 144 hours post infection (hpi). No viral RNA among the 39 genes was detected at 144 hpi suggesting the adult oysters are able to inhibit viral replication. Moreover, the IAP gene (oyster gene) shows significant up-regulation in infected adults compared to control adults. This result suggests that over-expression of IAP could be a reaction to OsHV-1 infection, which may induce the apoptotic process. Apoptosis could be a main mechanism involved in disease resistance in adults. Antiviral activity of haemolymph against herpes simplex virus (HSV-1) was not significantly different between infected adults versus control.

Corrosion Effects on the Fatigue Crack Propagation of Giga-Grade Steel and its Heat Affected Zone in pH Buffer Solutions for Automotive Application

Science.gov (United States)

Lee, H. S.

2018-03-01

Corrosion fatigue crack propagation test was conducted of giga-grade steel and its heat affected zone in pH buffer solutions, and the results were compared with model predictions. Pure corrosion effect on fatigue crack propagation, particularly, in corrosive environment was evaluated by means of the modified Forman equation. As shown in results, the average corrosion rate determined from the ratio of pure corrosion induced crack length to entire crack length under a cycle load were 0.11 and 0.37 for base metal and heat affected zone, respectively, with load ratio of 0.5, frequency of 0.5 and pH 10.0 environment. These results demonstrate new interpretation methodology for corrosion fatigue crack propagation enabling the pure corrosion effects on the behavior to be determined.

Computer Games : 5th Workshop on Computer Games, CGW 2016, and 5th Workshop on General Intelligence in Game-Playing Agents, GIGA 2016, held in conjunction with the 25th International Conference on Artificial Intelligence, IJCAI 2016, New York, USA, July 9-10, 2016, Revised selected papers

NARCIS (Netherlands)

Cazenave, Tristan; Winands, Mark H. M; Edelkamp, Stefan; Schiffel, Stephan; Thielscher, Michael; Togelius, Julian

2017-01-01

This book constitutes the refereed proceedings of the 5th Computer Games Workshop, CGW 2016, and the 5th Workshop on General Intelligence in Game-Playing Agents, GIGA 2016, held in conjunction with the 25th International Conference on Artificial Intelligence, IJCAI 2016, in New York, USA, in July

Variación estacional de lípidos en varios tejidos del cambute Strombus gigas (Mesogastropoda: Strombidae, en Quintana Roo, México

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Nancy Brito Manzano

1998-09-01

Full Text Available Se determinó la variación mensual de lípidos en varios tejidos del cambute Strombus gigas (L., en Banco Chinchorro, Quintana Roo, México durante un año. La longitud de la heliconcha fue 209 ± 1 mm, la del cuerpo 137 ± 1 mm, la de la espira 100 ± 1 mm y el peso húmedo total 1 826 ± 7 g. La media del contenido de lípidos en la gónada-glándula digestiva fue 4.27 g% (machos 4.01 g% y hembras 4.50 g%. El contenido de lípidos en gónada-glándula digestiva mostró diferencias sexuales significativas (p Strombus gigas samples were collected in Banco Chinchorro, Quintana Roo, Mexico (18°47'-18°23' N; 87°14' W. Shell, body and spire lenght were measured. Fat content of gonad, digestive gland and meat of male and female conchs, was analyzed by the standard and microsoxhlet methods on a monthly basis for a year. Mean lenght for shell, body and spire were 209 ± 1 mm, 137 ±1 mm and 100 ± 1 mm, respectively. Total wet weigth was 1 826 ± 7 g. Fat content in gonad-digestive gland was 1.27-9.33 g% with a mean of 4.27 g% and in meat 0.41-5.03 g% with a mean of 2.15 g%. Fat content in female gonad-digestive gland was 1.27 g% at 8.57 g% with a mean of 4.50 g%; in male: 1.87 g% at 9.33 g% with a mean of 4.01 g%. Sexes differed (t student P < 0.05. Mean fat content in meat was 2.15 g%, (males 1.97 g%, females 2.3 g%. There was not significant sexual difference for meat fat content. There was a difference between gonad-digestive gland and meat (t student P < 0.05. However, from February to September meat lipid content exceeds the percentage recommended for human consumption by the FAO.

Construction and analysis of a giant gartersnake (Thamnophis gigas) population projection model

Science.gov (United States)

Rose, Jonathan P.; Ersan, Julia S. M.; Wylie, Glenn D.; Casazza, Michael L.; Halstead, Brian J.

2018-03-19

The giant gartersnake (Thamnophis gigas) is a state and federally threatened species precinctive to California. The range of the giant gartersnake has contracted in the last century because its wetland habitat has been drained for agriculture and development. As a result of this habitat alteration, giant gartersnakes now largely persist in and near rice agriculture in the Sacramento Valley, because the system of canals that conveys water for rice growing approximates historical wetland habitat. Many aspects of the demography of giant gartersnakes are unknown, including how individuals grow throughout their life, how size influences reproduction, and how survival varies over time and among populations. We studied giant gartersnakes throughout the Sacramento Valley of California from 1995 to 2016 using capture-mark-recapture to study the growth, reproduction, and survival of this threatened species. We then use these data to construct an Integral Projection Model, and analyze this demographic model to understand which vital rates contribute most to the growth rate of giant gartersnake populations. We find that giant gartersnakes exhibit indeterminate growth; growth slows as individuals’ age. Fecundity, probability of reproduction, and survival all increase with size, although survival may decline for the largest female giant gartersnakes. The population growth rate of giant gartersnakes is most influenced by the survival and growth of large adult females, and the size at which 1 year old recruits enter the population. Our results indicate that management actions benefitting these influential demographic parameters will have the greatest positive effect on giant gartersnake population growth rates, and therefore population persistence. This study informs the conservation and management of giant gartersnakes and their habitat, and illustrates the effectiveness of hierarchical Bayesian models for the study of rare and elusive species.

Identification of Proteins with Potential Osteogenic Activity Present in the Water-Soluble Matrix Proteins from Crassostrea gigas Nacre Using a Proteomic Approach

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Daniel V. Oliveira

2012-01-01

Full Text Available Nacre, when implanted in vivo in bones of dogs, sheep, mice, and humans, induces a biological response that includes integration and osteogenic activity on the host tissue that seems to be activated by a set of proteins present in the nacre water-soluble matrix (WSM. We describe here an experimental approach that can accurately identify the proteins present in the WSM of shell mollusk nacre. Four proteins (three gigasin-2 isoforms and a cystatin A2 were for the first time identified in WSM of Crassostrea gigas nacre using 2DE and LC-MS/MS for protein identification. These proteins are thought to be involved in bone remodeling processes and could be responsible for the biocompatibility shown between bone and nacre grafts. These results represent a contribution to the study of shell biomineralization process and opens new perspectives for the development of new nacre biomaterials for orthopedic applications.

Isostructural exclusion of elements between aragonite and calcite layers in the shell of the Pacific oyster Crassostrea gigas

International Nuclear Information System (INIS)

Markwitz, A.; Gauldie, R.W.; Trompetter, W.J.; Pithie, J.; Jamieson, D.N.; Sharma, S.K.

1999-01-01

Sections of the shell of the farmed Pacific oyster 'Crassostrea gigas' that are available commercially in Wellington, New Zealand, showed a distinct alternating pattern in the shell mineral when observed by reflected light. The layers were identified by Raman scattering as alternating bands of the calcite and aragonite mineral forms of calcium carbonate using the micro-Raman facility at the Hawaii Institute of Geophysics and Planetology. The differences in the unit cell structure of calcite and aragonite favour different trace elements in the two minerals. Aragonite is isostructural with Strontianite SrCO 3 , and calcite is isostructural with Smithsonite ZnCO 3 . As a result, Sr deposition should be favoured in the aragonite layer and is excluded from the calcite layer; and, conversely, Zn deposition should be favoured in the calcite layer and is excluded from the aragonite layer. However, up to today, significant differences in the pattern of Sr and Zn in microprobe scans are not discovered. By ion microprobe analysis, it was shown that differences in the unit cell structure of calcite and aragonite favor different trace elements in the two minerals

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas.

Science.gov (United States)

Timmins-Schiffman, Emma; Coffey, William D; Hua, Wilber; Nunn, Brook L; Dickinson, Gary H; Roberts, Steven B

2014-11-03

Ocean acidification as a result of increased anthropogenic CO2 emissions is occurring in marine and estuarine environments worldwide. The coastal ocean experiences additional daily and seasonal fluctuations in pH that can be lower than projected end-of-century open ocean pH reductions. In order to assess the impact of ocean acidification on marine invertebrates, Pacific oysters (Crassostrea gigas) were exposed to one of four different p CO2 levels for four weeks: 400 μatm (pH 8.0), 800 μatm (pH 7.7), 1000 μatm (pH 7.6), or 2800 μatm (pH 7.3). At the end of the four week exposure period, oysters in all four p CO2 environments deposited new shell, but growth rate was not different among the treatments. However, micromechanical properties of the new shell were compromised by elevated p CO2. Elevated p CO2 affected neither whole body fatty acid composition, nor glycogen content, nor mortality rate associated with acute heat shock. Shotgun proteomics revealed that several physiological pathways were significantly affected by ocean acidification, including antioxidant response, carbohydrate metabolism, and transcription and translation. Additionally, the proteomic response to a second stress differed with p CO2, with numerous processes significantly affected by mechanical stimulation at high versus low p CO2 (all proteomics data are available in the ProteomeXchange under the identifier PXD000835). Oyster physiology is significantly altered by exposure to elevated p CO2, indicating changes in energy resource use. This is especially apparent in the assessment of the effects of p CO2 on the proteomic response to a second stress. The altered stress response illustrates that ocean acidification may impact how oysters respond to other changes in their environment. These data contribute to an integrative view of the effects of ocean acidification on oysters as well as physiological trade-offs during environmental stress.

Simultaneous analysis of five molecular markers provides a well-supported phylogenetic hypothesis for the living bony-tongue fishes (Osteoglossomorpha: Teleostei).

Science.gov (United States)

Lavoué, Sébastien; Sullivan, John P

2004-10-01

Fishes of the Superorder Osteoglossomorpha (the "bonytongues") constitute a morphologically heterogeneous group of basal teleosts, including highly derived subgroups such as African electric fishes, the African butterfly fish, and Old World knifefishes. Lack of consensus among hypotheses of osteoglossomorph relationships advanced during the past 30 years may be due in part to the difficulty of identifying shared derived characters among the morphologically differentiated extant families of this group. In this study, we present a novel phylogenetic hypothesis for this group, based on the analysis of more than 4000 characters from five molecular markers (the mitochondrial cytochrome b, 12S and 16S rRNA genes, and the nuclear genes RAG2 and MLL). Our taxonomic sampling includes one representative of each extant non-mormyrid osteoglossomorph genus, one representative for the monophyletic family Mormyridae, and four outgroup taxa within the basal Teleostei. Maximum parsimony analysis of combined and equally weighted characters from the five molecular markers and Bayesian analysis provide a single, well-supported, hypothesis of osteoglossomorph interrelationships and show the group to be monophyletic. The tree topology is the following: (Hiodon alosoides, (Pantodon buchholzi, (((Osteoglossum bicirrhosum, Scleropages sp.), (Arapaima gigas, Heterotis niloticus)), ((Gymnarchus niloticus, Ivindomyrus opdenboschi), ((Notopterus notopterus, Chitala ornata), (Xenomystus nigri, Papyrocranus afer)))))). We compare our results with previously published phylogenetic hypotheses based on morpho-anatomical data. Additionally, we explore the consequences of the long terminal branch length for the taxon Pantodon buchholzi in our phylogenetic reconstruction and we use the obtained phylogenetic tree to reconstruct the evolutionary history of electroreception in the Notopteroidei.

Molecular Cloning and Characterization of Full-Length cDNA of Calmodulin Gene from Pacific Oyster Crassostrea gigas.

Science.gov (United States)

Li, Xing-Xia; Yu, Wen-Chao; Cai, Zhong-Qiang; He, Cheng; Wei, Na; Wang, Xiao-Tong; Yue, Xi-Qing

2016-01-01

The shell of the pearl oyster ( Pinctada fucata ) mainly comprises aragonite whereas that of the Pacific oyster ( Crassostrea gigas ) is mainly calcite, thereby suggesting the different mechanisms of shell formation between above two mollusks. Calmodulin (CaM) is an important gene for regulating the uptake, transport, and secretion of calcium during the process of shell formation in pearl oyster. It is interesting to characterize the CaM in oysters, which could facilitate the understanding of the different shell formation mechanisms among mollusks. We cloned the full-length cDNA of Pacific oyster CaM (cgCaM) and found that the cgCaM ORF encoded a peptide of 113 amino acids containing three EF-hand calcium-binding domains, its expression level was highest in the mantle, hinting that the cgCaM gene is probably involved in shell formation of Pacific oyster, and the common ancestor of Gastropoda and Bivalvia may possess at least three CaM genes. We also found that the numbers of some EF hand family members in highly calcified species were higher than those in lowly calcified species and the numbers of these motifs in oyster genome were the highest among the mollusk species with whole genome sequence, further hinting the correlation between CaM and biomineralization.

Molecular Cloning and Characterization of Full-Length cDNA of Calmodulin Gene from Pacific Oyster Crassostrea gigas

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Xing-Xia Li

2016-01-01

Full Text Available The shell of the pearl oyster (Pinctada fucata mainly comprises aragonite whereas that of the Pacific oyster (Crassostrea gigas is mainly calcite, thereby suggesting the different mechanisms of shell formation between above two mollusks. Calmodulin (CaM is an important gene for regulating the uptake, transport, and secretion of calcium during the process of shell formation in pearl oyster. It is interesting to characterize the CaM in oysters, which could facilitate the understanding of the different shell formation mechanisms among mollusks. We cloned the full-length cDNA of Pacific oyster CaM (cgCaM and found that the cgCaM ORF encoded a peptide of 113 amino acids containing three EF-hand calcium-binding domains, its expression level was highest in the mantle, hinting that the cgCaM gene is probably involved in shell formation of Pacific oyster, and the common ancestor of Gastropoda and Bivalvia may possess at least three CaM genes. We also found that the numbers of some EF hand family members in highly calcified species were higher than those in lowly calcified species and the numbers of these motifs in oyster genome were the highest among the mollusk species with whole genome sequence, further hinting the correlation between CaM and biomineralization.

Age, maturation, and population structure of the Humboldt squid Dosidicus gigas off the Peruvian Exclusive Economic Zones

Institute of Scientific and Technical Information of China (English)

LIU Bilin; CHEN Xinjun; CHEN Yong; TIAN Siquan; LI Jianhua; FANG Zhou; YANG Mingxia

2013-01-01

Age,maturation and population structure of the Humboldt squid Dosidicus gigas were studied based on random sampling of the Chinese jigging fishery off the Peruvian Exclusive Economic Zones (EEZ) during 2008-2010.Estimated ages ranged from 144 to 633 days,confirming that the squid is a short-lived species with longevity no longer than 2 years.Occurrence of mature females and hatching in each month indicated that Humboldt squid spawned year-round.Back-calculated hatching dates for the samples were from January 22nd,2008 to April 22nd,2010 with a peak between January and March.Two size-based and two hatching date-based populations could be defined from mantle length (ML) at maturity and back-calculated hatching dates,respectively.Females matured at a larger size than males,and there was a significant difference in ML at maturity between the two hatching groups (P＜0.05).The waters adjacent to 11°S off the Peruvian EEZ may be a potential spawning ground.This study shows the complexity of the population structure and large variability in key life history parameters in the Humboldt squid off the Peruvian EEZ,which should be considered in the assessment and management of this important resource.

Impact of minimum catch size on the population viability of Strombus gigas (Mesogastropoda: Strombidae) in Quintana Roo, Mexico.

Science.gov (United States)

Peel, Joanne R; Mandujano, María del Carmen

2014-12-01

The queen conch Strombus gigas represents one of the most important fishery resources of the Caribbean but heavy fishing pressure has led to the depletion of stocks throughout the region, causing the inclusion of this species into CITES Appendix II and IUCN's Red-List. In Mexico, the queen conch is managed through a minimum fishing size of 200 mm shell length and a fishing quota which usually represents 50% of the adult biomass. The objectives of this study were to determine the intrinsic population growth rate of the queen conch population of Xel-Ha, Quintana Roo, Mexico, and to assess the effects of a regulated fishing impact, simulating the extraction of 50% adult biomass on the population density. We used three different minimum size criteria to demonstrate the effects of minimum catch size on the population density and discuss biological implications. Demographic data was obtained through capture-mark-recapture sampling, collecting all animals encountered during three hours, by three divers, at four different sampling sites of the Xel-Ha inlet. The conch population was sampled each month between 2005 and 2006, and bimonthly between 2006 and 2011, tagging a total of 8,292 animals. Shell length and lip thickness were determined for each individual. The average shell length for conch with formed lip in Xel-Ha was 209.39 ± 14.18 mm and the median 210 mm. Half of the sampled conch with lip ranged between 200 mm and 219 mm shell length. Assuming that the presence of the lip is an indicator for sexual maturity, it can be concluded that many animals may form their lip at greater shell lengths than 200 mm and ought to be considered immature. Estimation of relative adult abundance and densities varied greatly depending on the criteria employed for adult classification. When using a minimum fishing size of 200 mm shell length, between 26.2% and up to 54.8% of the population qualified as adults, which represented a simulated fishing impact of almost one third of the

Development of an in situ hybridization assay for the detection of ostreid herpesvirus type 1 mRNAs in the Pacific oyster, Crassostrea gigas.

Science.gov (United States)

Corbeil, Serge; Faury, Nicole; Segarra, Amélie; Renault, Tristan

2015-01-01

An in situ hybridization protocol for detecting mRNAs of ostreid herpesvirus type 1 (OsHV-1) which infects Pacific oysters, Crassostrea gigas, was developed. Three RNA probes were synthesized by cloning three partial OsHV-1 genes into plasmids using three specific primer pairs, and performing a transcription in the presence of digoxigenin dUTP. The RNA probes were able to detect the virus mRNAs in paraffin sections of experimentally infected oysters 26 h post-injection. The in situ hybridization showed that the OsHV-1 mRNAs were mainly present in connective tissues in gills, mantle, adductor muscle, digestive gland and gonads. DNA detection by in situ hybridization using a DNA probe and viral DNA quantitation by real-time PCR were also performed and results were compared with those obtained using RNA probes. Copyright © 2014 Elsevier B.V. All rights reserved.

Evaluación de la toxicidad a dosis repetidas (90 días) por vía oral del concentrado de proteína de pota (Dosidicus gigas), en ratas Sprague dawley

OpenAIRE

Rojas Hurtado, Daniel Percy

2009-01-01

Universidad Nacional Agraria La Molina. Escuela de Posgrado. Maestría en Tecnología de Alimentos El potencial tóxico de un concentrado de proteína de calamar gigante (Dosidicus gigas) fue evaluado mediante el estudio de toxicidad de dosis repetidas a 90 días en ratas Sprague Dawley de ambos sexos. Los métodos empleados fueron los descritos por las normas OECD (1998). Se administró por vía oral la dosis de 500, 1000 y 2000 mg/kg/día durante 13 semanas. Se evaluaron los signos tóxicos y peso...

Characterization of CgHIFα-Like, a Novel bHLH-PAS Transcription Factor Family Member, and Its Role under Hypoxia Stress in the Pacific Oyster Crassostrea gigas.

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Ting Wang

Full Text Available Hypoxia-inducible factor (HIF, a critical member of the basic-helix-loop-helix (bHLH-containing Per-Arnt-Sim (PAS protein family, is a master transcription factor involved in maintaining oxygen homeostasis. In the present study, we isolated and characterized a novel bHLH-PAS family member, CgHIFα-like gene, from the Pacific oyster Crassostrea gigas, and determined its importance during hypoxia stress. The 3020-bp CgHIFα-like cDNA encoded a protein of 888 amino acids. The predicted CgHIFα-like amino acid sequence was conserved in the N-terminal bHLH, PAS, and PAC domains (but not in the C-terminal domain and was most closely related to the HIF family in the bHLH-PAS protein phylogenic tree. Similar to the mammalian HIF-1α, CgHIFα-like could be expressed as four mRNA isoforms containing alternative 5'-untranslated regions and different translation initiation codons. At the mRNA level, these isoforms were expressed in a tissue-specific manner and showed increased transcription to varying degrees under hypoxic conditions. Additionally, the western blot analysis demonstrated that CgHIFα-like was induced by hypoxia. Electrophoretic mobility shift assay indicated that CgHIFα-like could bind to the hypoxia responsive element (HRE, whereas dual-luciferase reporter analysis demonstrated that CgHIFα-like could transactivate the reporter gene containing the HREs. In addition to CgHIFα-like, we identified CgARNT from the C. gigas, analyzed its expression pattern, and confirmed its interaction with CgHIFα-like using a yeast two-hybrid assay. In conclusion, this is the first report on the cloning and characterization of a novel hypoxia transcription factor in mollusks, which could accumulate under hypoxia and regulate hypoxia related gene expression by binding to HRE and dimerizing with CgARNT. As only one member of HIF has been identified in invertebrates to date, our results provide new insights into the unique mechanisms of hypoxia tolerance in

Radiation sensitivity of poliovirus, a model for norovirus, inoculated in oyster (Crassostrea gigas) and culture broth under different conditions

Energy Technology Data Exchange (ETDEWEB)

Jung, Pil-Mun [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup 580-185 (Korea, Republic of); Park, Jae Seok [Korea Food and Drug Administration, Seoul 122-704 (Korea, Republic of); Park, Jin-Gyu; Park, Jae-Nam; Han, In-Jun; Song, Beom-Seok; Choi, Jong-il; Kim, Jae-Hun; Byun, Myung-Woo [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup 580-185 (Korea, Republic of); Baek, Min [Atomic Energy Policy Division, Ministry of Education, Science and Technology, Gwacheon 427-715 (Korea, Republic of); Chung, Young-Jin [Department of Food and Nutrition, Chungnam National University, Daejeon 305-764 (Korea, Republic of); Lee, Ju-Woon [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup 580-185 (Korea, Republic of)], E-mail: sjwlee@kaeri.re.kr

2009-07-15

Poliovirus is a recognized surrogate for norovirus, pathogen in water and food, due to the structural and genetic similarity. Although radiation sensitivity of poliovirus in water or media had been reported, there has been no research in food model such as shellfish. In this study, oyster (Crassostrea gigas) was incubated in artificial seawater contaminated with poliovirus, and thus radiation sensitivity of poliovirus was determined in inoculated oyster. The effects of ionizing radiation on the sensitivity of poliovirus were also evaluated under different conditions such as pH (4-7) and salt concentration (1-15%) in culture broth, and temperature during irradiation. The D{sub 10} value of poliovirus in PBS buffer, virus culture broth and oyster was determined to 0.46, 2.84 and 2.94 kGy, respectively. The initial plaque forming unit (PFU) of poliovirus in culture broth was slightly decreased as the decrease of pH and the increase of salt concentration, but radiation sensitivity was not affected by pH and salt contents. However, radiation resistance of poliovirus was increased at frozen state. These results provide the basic information for the inactivation of pathogenic virus in foods by using irradiation.

Radiation sensitivity of poliovirus, a model for norovirus, inoculated in oyster (Crassostrea gigas) and culture broth under different conditions

International Nuclear Information System (INIS)

Jung, Pil-Mun; Park, Jae Seok; Park, Jin-Gyu; Park, Jae-Nam; Han, In-Jun; Song, Beom-Seok; Choi, Jong-il; Kim, Jae-Hun; Byun, Myung-Woo; Baek, Min; Chung, Young-Jin; Lee, Ju-Woon

2009-01-01

Poliovirus is a recognized surrogate for norovirus, pathogen in water and food, due to the structural and genetic similarity. Although radiation sensitivity of poliovirus in water or media had been reported, there has been no research in food model such as shellfish. In this study, oyster (Crassostrea gigas) was incubated in artificial seawater contaminated with poliovirus, and thus radiation sensitivity of poliovirus was determined in inoculated oyster. The effects of ionizing radiation on the sensitivity of poliovirus were also evaluated under different conditions such as pH (4-7) and salt concentration (1-15%) in culture broth, and temperature during irradiation. The D 10 value of poliovirus in PBS buffer, virus culture broth and oyster was determined to 0.46, 2.84 and 2.94 kGy, respectively. The initial plaque forming unit (PFU) of poliovirus in culture broth was slightly decreased as the decrease of pH and the increase of salt concentration, but radiation sensitivity was not affected by pH and salt contents. However, radiation resistance of poliovirus was increased at frozen state. These results provide the basic information for the inactivation of pathogenic virus in foods by using irradiation.

Radiation sensitivity of poliovirus, a model for norovirus, inoculated in oyster ( Crassostrea gigas) and culture broth under different conditions

Science.gov (United States)

Jung, Pil-Mun; Park, Jae Seok; Park, Jin-Gyu; Park, Jae-Nam; Han, In-Jun; Song, Beom-Seok; Choi, Jong-il; Kim, Jae-Hun; Byun, Myung-Woo; Baek, Min; Chung, Young-Jin; Lee, Ju-Woon

2009-07-01

Poliovirus is a recognized surrogate for norovirus, pathogen in water and food, due to the structural and genetic similarity. Although radiation sensitivity of poliovirus in water or media had been reported, there has been no research in food model such as shellfish. In this study, oyster ( Crassostrea gigas) was incubated in artificial seawater contaminated with poliovirus, and thus radiation sensitivity of poliovirus was determined in inoculated oyster. The effects of ionizing radiation on the sensitivity of poliovirus were also evaluated under different conditions such as pH (4-7) and salt concentration (1-15%) in culture broth, and temperature during irradiation. The D10 value of poliovirus in PBS buffer, virus culture broth and oyster was determined to 0.46, 2.84 and 2.94 kGy, respectively. The initial plaque forming unit (PFU) of poliovirus in culture broth was slightly decreased as the decrease of pH and the increase of salt concentration, but radiation sensitivity was not affected by pH and salt contents. However, radiation resistance of poliovirus was increased at frozen state. These results provide the basic information for the inactivation of pathogenic virus in foods by using irradiation.

Assessment of bioavailability of weathered oil residues using caged bivalves (Crassostrea gigas and Mytilus edulis) as indicator organisms

International Nuclear Information System (INIS)

Bleczinski, C.F.; Costa, H.J.; Rigatti, M.J.; Wong, M.C.; Boehm, P.D.

1993-01-01

In April 1988, an estimated 400,000 gallons of San Joaquin Valley crude oil spilled into Peyton Slough and subsequently into Suisun Bay from an oil refinery in Martinez, California. The crude oil initially impacted a number of ecologically sensitive environments including estuarine water, marsh grasses, marsh and shoreline sediment, and intertidal sediment. A four-year oil weathering study was performed to determine the concentrations of environmentally important compounds in the stranded oil, to monitor changes in these concentrations over time, and to assess the potential long-term impact of the spilled oil in these various environments. As a result of marked differences in the rate of weathering at the different sites, a bioaccumulation component was added to the original study design in order to assess the bioavailability of crude oil residues remaining four-years post spill. Caged bivalves (Crassostrea gigas and Mytilus edulis) were deployed at the three study sites as sentinel organisms and exposed for three months. Sediments and organism tissues were analyzed using gas chromatography/mass spectrometry for polynuclear aromatic hydrocarbon (PAH) assemblages characteristics of the spilled oil. Advanced hydrocarbon fingerprinting techniques (e.g., double ratio plots of characteristic alkyl PAHs) were used to match distributions in the organisms and in the study site sediments

Assessment of sediment contamination by spermiotoxicity and embryotoxicity bioassays with sea urchins (Paracentrotus lividus) and oysters (Crassostrea gigas).

Science.gov (United States)

Geffard, O; Budzinski, H; Augagneur, S; Seaman, M N; His, E

2001-07-01

Gametes (sperm) and fertilized eggs (embryos) of the Mediterranean sea urchin, Paracentrotus lividus, and the Japanese oyster, Crassostrea gigas, were used to investigate the toxicity of two marine sediments, one polluted by polycyclic aromatic hydrocarbons (PAH) and the other by heavy metals. The sediment samples were freeze-dried for storage, and three different treatments were used for analysis: whole sediment, unfiltered elutriate, and filtered elutriate. The two sediments were toxic to sea urchin spermatozoa but not to oyster spermatozoa, and embryotoxicity was almost always the more sensitive endpoint for toxicity assessment. As a rule, whole sediment was more toxic than the elutriates by nearly two orders of magnitude. With respect to embryotoxicity, the whole sediments and the elutriates of the PAH-contaminated sediment were more toxic to oyster embryos, whereas the elutriates of the sediment polluted by heavy metals had stronger effects on sea urchin embryos. The results confirm that bioassays with Japanese oyster embryos provide a more sensitive appraisal of toxicity in the marine environment than bioassays with other developmental stages. As a whole, Mediterranean sea urchins and Japanese oysters were similar in overall sensitivity and are therefore both equally suited as bioassay organisms, but tests with oysters are more reproducible because of the better performance of the controls.

Microflora in the Soft Tissue of the Pacific Oyster Crassostrea gigas Exposed to the Harmful Microalga Heterosigma akashiwo.

Science.gov (United States)

Takenaka, Shinkuro; Yoshikawa, Takeshi; Kadowaki, Shusaku; Okunishi, Suguru; Maeda, Hiroto

2017-01-01

　A marine raphidophyte Heterosigma akashiwo is a causative agent of harmful microalgal blooms, which often cause the massive mortality of aquacultured finfish. In the present study, the Pacific oyster Crassostrea gigas was reared with H. akashiwo, and effect of the microalga on filter-feeding behavior and microflora of the gastrointestinal tract was investigated. The intake of the raphidophyte cells inhibited the molluscan filter-feeding activities, suggesting the negative physiological effect of the microalgal cell contents. However, the bivalves ingested the H. akashiwo cells to the same extent as the diatom Chaetoceros calcitrans, a non-harmful indicator to estimate the filtration rate, showing a continuation of their non-selective ingestion of the phytoplankton. Microflora of the oyster soft tissue was dominated by bacteria affiliated with the family Rhodobacteraceae, some of which are associated with microalgae. In addition, the Bacteroidetes species, in which algicidal bacteria are included, were also found in the bivalve individuals exposed to H. akashiwo. These results suggested that the ingested phytoplankton affected the microbial flora in the gastrointestinal tracts, some constituents of which helped the mollusc assimilate the ingested red tide phytoplankton. This study will provide beneficial information to clarify mechanisms by which the oyster evades the ichthyotoxicity of harmful microalgae and the participation of the intestinal microorganisms in these processes.

Abundance and sexual size dimorphism of the giant gartersnake (Thamnophis gigas) in the Sacramento valley of California

Science.gov (United States)

Wylie, G.D.; Casazza, Michael L.; Gregory, C.J.; Halstead, B.J.

2010-01-01

The Giant Gartersnake (Thamnophis gigas) is restricted to wetlands of the Central Valley of California. Because of wetland loss in this region, the Giant Gartersnake is both federally and state listed as threatened. We conducted markrecapture studies of four populations of the Giant Gartersnake in the Sacramento Valley (northern Central Valley), California, to obtain baseline data on abundance and density to assist in recovery planning for this species. We sampled habitats that ranged from natural, unmanaged marsh to constructed managed marshes and habitats associated with rice agriculture. Giant Gartersnake density in a natural wetland (1.90 individuals/ha) was an order of magnitude greater than in a managed wetland subject to active season drying (0.17 individuals/ha). Sex ratios at all sites were not different from 1 1, and females were longer and heavier than males. Females had greater body condition than males, and individuals at the least disturbed sites had significantly greater body condition than individuals at the managed wetland. The few remaining natural wetlands in the Central Valley are important, productive habitat for the Giant Gartersnake, and should be conserved and protected. Wetlands constructed and restored for the Giant Gartersnake should be modeled after the permanent, shallow wetlands representative of historic Giant Gartersnake habitat. ?? 2010 Society for the Study of Amphibians and Reptiles.

A survey of oysters (Crassostrea gigas) in New Zealand for Vibrio parahaemolyticus and Vibrio vulnificus.

Science.gov (United States)

Kirs, M; Depaola, A; Fyfe, R; Jones, J L; Krantz, J; Van Laanen, A; Cotton, D; Castle, M

2011-05-27

A microbiological survey was conducted to determine the levels of total and pathogenic Vibrio parahaemolyticus (Vp) and Vibrio vulnificus (Vv) in Pacific oysters (Crassostrea gigas) collected from commercial growing areas in the North Island, New Zealand. The survey was intended to be geographically representative of commercial growing areas of Pacific oysters in New Zealand, while selecting the time frame most likely to coincide with the increased abundance of pathogenic vibrio species. Vp was detected in 94.8% of oyster samples examined (n=58) with a geometric mean concentration of 99.3 MPN/g, while Vv was detected in 17.2% of oyster samples examined with a geometric mean concentration of 7.4 MPN/g. The frequency of Vp positive samples was 1.7 fold greater than reported in a study conducted three decades ago in New Zealand. Potentially virulent (tdh positive) Vp was detected in two samples (3.4%, n=58) while no trh (another virulence marker) positive samples were detected. 16S rRNA genotype could be assigned only to 58.8% of Vv isolates (8:1:1 A:B:AB ratio, n=10). There was a good agreement [98.2% of Vp (n=280) and 94.4% of Vv (n=18) isolates] between molecular tests and cultivation based techniques used to identify Vibrio isolates and there was a significant (R(2)=0.95, Pcultivation. There was no significant correlation between any of the environmental parameters tested and Vp or Vv concentrations. Copyright © 2011 Elsevier B.V. All rights reserved.

Heterologous expression of the Crassostrea gigas (Pacific oyster) alternative oxidase in the yeast Saccharomyces cerevisiae.

Science.gov (United States)

Robertson, Aaron; Schaltz, Kyle; Neimanis, Karina; Staples, James F; McDonald, Allison E

2016-10-01

Alternative oxidase (AOX) is a terminal oxidase within the inner mitochondrial membrane (IMM) present in many organisms where it functions in the electron transport system (ETS). AOX directly accepts electrons from ubiquinol and is therefore capable of bypassing ETS Complexes III and IV. The human genome does not contain a gene coding for AOX, so AOX expression has been suggested as a gene therapy for a range of human mitochondrial diseases caused by genetic mutations that render Complex III and/or IV dysfunctional. An effective means of screening mutations amenable to AOX treatment remains to be devised. We have generated such a tool by heterologously expressing AOX from the Pacific oyster (Crassostrea gigas) in the yeast Saccharomyces cerevisiae under the control of a galactose promoter. Our results show that this animal AOX is monomeric and is correctly targeted to yeast mitochondria. Moreover, when expressed in yeast, Pacific oyster AOX is a functional quinol oxidase, conferring cyanide-resistant growth and myxothiazol-resistant oxygen consumption to yeast cells and isolated mitochondria. This system represents a high-throughput screening tool for determining which Complex III and IV genetic mutations in yeast will be amenable to AOX gene therapy. As many human genes are orthologous to those found in yeast, our invention represents an efficient and cost-effective way to evaluate viable research avenues. In addition, this system provides the opportunity to learn more about the localization, structure, and regulation of AOXs from animals that are not easily reared or manipulated in the lab.

Ocurrence of Vibrio spp., positive coagulase staphylococci and enteric bacteria in oysters (Crassostrea gigas harvested in the south bay of Santa Catarina island, Brazil Ocorrência de Vibrio spp., estafilococos coagulase positivo e bactérias entéricas em ostras (Crassostrea gigas cultivadas na baía sul da ilha de Santa Catarina, Brasil

Directory of Open Access Journals (Sweden)

Roberta Juliano Ramos

2012-09-01

Full Text Available The aim of this study was to assess the contamination of oysters (Crassostrea gigas, harvested in six different regions of the South Bay of Santa Catarina Island, with Coliforms at 45 ºC, Escherichia coli, Vibrio spp., positive coagulase staphylococci, and Salmonella sp. over a period of one year. One hundred eighty oyster samples were collected directly from their culture sites and analyzed. Each sample consisted of a pool of 12 oysters. All of the samples analyzed showed absence of Salmonella, 18 (10% samples showed presence of Escherichia coli, 15 (8.3% samples were positive for V. alginolyticus, and Vibriocholerae was detected in 4 samples (2.2%. The counts of positive-coagulase staphylococci varied from O objetivo deste estudo foi avaliar a contaminação de ostras (Crassostrea gigas cultivadas em diferentes regiões da Baía Sul da Ilha de Santa Catarina, por coliformes a 45 ºC, Escherichia coli, Vibrio spp. Estafilococos coagulase positiva e Salmonella sp., durante o período de um ano. Foram analisadas 180 amostras, coletadas diretamente no local de cultivo. Todas as amostras analisadas apresentaram ausência de Salmonella, 18 (10% amostras apresentaram presença de Escherichia coli, 15 (8,3% amostras positivas para Vibrio alginolyticus e V. cholerae foi detectado em 4 amostras (2,2%. As contagens de Estafilococos coagulase positiva variaram de <10 a 1,9 x 102 UFC.g-1, enquanto que as contagens de coliformes a 45 ºC e E. coli variaram de <3 a 1,5 x 102 NMP.g-1 e <3 e 4,3 x 10 NMP.g-1, respectivamente. As contagens de V. parahaemolyticus e V. vulnificus variaram de <3 a 7 NMP.g-1, para ambos os microrganismos, sugerindo um monitoramento tanto destas espécies quanto da temperatura das águas marinhas nas regiões de cultivo. Com base nos resultados das análises microbiológicas, as amostras analisadas mostraram qualidade bacteriológica aceitável, ou seja, dentro dos parâmetros estabelecidos na legislação brasileira.

The biofilteration ability of oysters (Crassostrea gigas) to reduce Aeromonas salmonicida in salmon culture.

Science.gov (United States)

Ma, Xiaona; Li, Xian; Sun, Guoxiang; Sharawy, Zaki Zaki; Qiu, Tianlong; Du, Yishuai; Liu, Ying

2017-07-01

Pathogen contamination in the environment is inevitable with the rapid development of intensive aquaculture. Therefore, alternative ecofriendly biological strategies to control pathogenic bacteria are required. However, our aim was to investigate the ability of oysters (Crassostrea gigas) to filter the important opportunistic pathogen, Aeromonas salmonicida (strain C4), using a green fluorescent protein tag (GFP) in the Atlantic salmon (Salmo salar) farming wastewater. Hence, A. salmonicida removal efficiency and ingestion rate were detected in two different oyster stages (larvae and adults). To evaluate the practical performance of oysters as A. salmonicida biofilter, adult oysters were applied to an integrated constructed wetlands system (ICWS) and their long-term C4-GFP removal efficiency was recorded for 60 days. Overall, our results clearly indicated that oysters had substantial A. salmonicida removal ability via their ingestion process when observed under a fluorescent microscope. Approximately 88-95% of C4-GFP was removed by oyster larvae at an ingestion rate of 6.4 × 10 3 -6.2 × 10 5  CFU/h·ind, while 79-92% of C4-GFP was removed by adult oysters at an ingestion rate of 2.1 × 10 4 -3.1 × 10 6  CFU/h·ind. Furthermore, 57.9 ± 17.2% of C4-GFP removal efficiency was achieved when oysters were applied to ICWS. We, therefore, concluded that using oysters as a biofilter represents an effective alternative for removing A. salmonicida from aquaculture wastewater. However, the fate of oysters after ingesting the pathogenic bacteria, acting as a potential reservoir or vector for pathogens, is still debatable. This research provides the basis for the application of oysters as a biofilter to remove pathogens from aquaculture wastewater in industrialized production.

Gills are an initial target of zinc oxide nanoparticles in oysters Crassostrea gigas, leading to mitochondrial disruption and oxidative stress

International Nuclear Information System (INIS)

Trevisan, Rafael; Delapedra, Gabriel; Mello, Danielle F.; Arl, Miriam; Schmidt, Éder C.; Meder, Fabian; Monopoli, Marco; Cargnin-Ferreira, Eduardo; Bouzon, Zenilda L.; Fisher, Andrew S.; Sheehan, David; Dafre, Alcir L.

2014-01-01

Graphical abstract: - Highlights: • ZnONP exposure causes an initial accumulation of zinc in gills and later in digestive gland. • Zinc burden occurs by ZnONP endocytosis or uptake of ionic zinc after dissociation. • ZnONP exposure disrupts mitochondrial ultrastructure in both tissues. • Mitochondrial damage and oxidative stress are major features of ZnONP acute toxicity. - Abstract: The increasing industrial use of nanomaterials during the last decades poses a potential threat to the environment and in particular to organisms living in the aquatic environment. In the present study, the toxicity of zinc oxide nanoparticles (ZnONP) was investigated in Pacific oysters Crassostrea gigas. The nanoscale of ZnONP, in vehicle or ultrapure water, was confirmed, presenting an average size ranging from 28 to 88 nm. In seawater, aggregation was detected by TEM and DLS analysis, with an increased average size ranging from 1 to 2 μm. Soluble or nanoparticulated zinc presented similar toxicity, displaying a LC 50 (96 h) around 30 mg/L. High zinc dissociation from ZnONP, releasing ionic zinc in seawater, is a potential route for zinc assimilation and ZnONP toxicity. To investigate mechanisms of toxicity, oysters were treated with 4 mg/L ZnONP for 6, 24 or 48 h. ZnONP accumulated in gills (24 and 48 h) and digestive glands (48 h). Ultrastructural analysis of gills revealed electron-dense vesicles near the cell membrane and loss of mitochondrial cristae (6 h). Swollen mitochondria and a more conspicuous loss of mitochondrial cristae were observed after 24 h. Mitochondria with disrupted membranes and an increased number of cytosolic vesicles displaying electron-dense material were observed 48 h post exposure. Digestive gland showed similar changes, but these were delayed relative to gills. ZnONP exposure did not greatly affect thiol homeostasis (reduced and oxidized glutathione) or immunological parameters (phagocytosis, hemocyte viability and activation and total hemocyte

Gills are an initial target of zinc oxide nanoparticles in oysters Crassostrea gigas, leading to mitochondrial disruption and oxidative stress

Energy Technology Data Exchange (ETDEWEB)

Trevisan, Rafael; Delapedra, Gabriel; Mello, Danielle F.; Arl, Miriam [Department of Biochemistry, Federal University of Santa Catarina, 88040-900 Florianópolis, SC (Brazil); Schmidt, Éder C. [Department of Cell Biology, Embryology and Genetic, Federal University of Santa Catarina, 88049-900 Florianópolis, SC (Brazil); Meder, Fabian; Monopoli, Marco [Centre for Bionano Interactions, University College Dublin, Dublin (Ireland); Cargnin-Ferreira, Eduardo [Federal Institute of Santa Catarina, Campus Garopaba, Laboratory of Histological Markers, 88495-000 Garopaba, SC (Brazil); Bouzon, Zenilda L. [Department of Cell Biology, Embryology and Genetic, Federal University of Santa Catarina, 88049-900 Florianópolis, SC (Brazil); Fisher, Andrew S. [School of Geography, Earth and Environmental Sciences, University of Plymouth, PL4 8AA Plymouth (United Kingdom); Sheehan, David [Department of Biochemistry, University College Cork, Cork (Ireland); Dafre, Alcir L., E-mail: alcir.dafre@ufsc.br [Department of Biochemistry, Federal University of Santa Catarina, 88040-900 Florianópolis, SC (Brazil)

2014-08-15

Graphical abstract: - Highlights: • ZnONP exposure causes an initial accumulation of zinc in gills and later in digestive gland. • Zinc burden occurs by ZnONP endocytosis or uptake of ionic zinc after dissociation. • ZnONP exposure disrupts mitochondrial ultrastructure in both tissues. • Mitochondrial damage and oxidative stress are major features of ZnONP acute toxicity. - Abstract: The increasing industrial use of nanomaterials during the last decades poses a potential threat to the environment and in particular to organisms living in the aquatic environment. In the present study, the toxicity of zinc oxide nanoparticles (ZnONP) was investigated in Pacific oysters Crassostrea gigas. The nanoscale of ZnONP, in vehicle or ultrapure water, was confirmed, presenting an average size ranging from 28 to 88 nm. In seawater, aggregation was detected by TEM and DLS analysis, with an increased average size ranging from 1 to 2 μm. Soluble or nanoparticulated zinc presented similar toxicity, displaying a LC{sub 50} (96 h) around 30 mg/L. High zinc dissociation from ZnONP, releasing ionic zinc in seawater, is a potential route for zinc assimilation and ZnONP toxicity. To investigate mechanisms of toxicity, oysters were treated with 4 mg/L ZnONP for 6, 24 or 48 h. ZnONP accumulated in gills (24 and 48 h) and digestive glands (48 h). Ultrastructural analysis of gills revealed electron-dense vesicles near the cell membrane and loss of mitochondrial cristae (6 h). Swollen mitochondria and a more conspicuous loss of mitochondrial cristae were observed after 24 h. Mitochondria with disrupted membranes and an increased number of cytosolic vesicles displaying electron-dense material were observed 48 h post exposure. Digestive gland showed similar changes, but these were delayed relative to gills. ZnONP exposure did not greatly affect thiol homeostasis (reduced and oxidized glutathione) or immunological parameters (phagocytosis, hemocyte viability and activation and total

Microbiological quality of oysters (Crassostrea gigas produced and commercialized in the coastal region of Florianópolis - Brazil

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Pereira Murilo Anderson

2006-01-01

Full Text Available Oysters are filter feeders able to ingest particles in suspension that may carry pathogenic microorganisms. In this respect, the consumption of raw oysters can cause foodborne diseases in humans. The aim of the present study was to evaluate the microbiological quality of Crassostrea gigas oysters cultivated and commercialized in the coastal region of Florianópolis, SC, Brazil. The study comprised counts of coliforms at 35ºC and at 45ºC, Escherichia coli and coagulase-positive staphylococci, and detection of Salmonella sp, Vibrio cholerae and Vibrio parahaemolyticus. Ninety samples were analyzed, 45 of them collected at seafood commercial establishments and the other 45 were collected in the cultivation area. All analyses were performed according to methods of the American Public Health Association. Vibrio cholerae, V. parahaemolyticus and Salmonella sp. were not detected in any of the samples. Coagulase-positive staphylococci were observed in only one sample (80 CFU/g. The counts of coliforms at 35 and 45ºC indicated that samples obtained from both the cultivation area and place of sale were contaminated. E. coli was detected in 4 (9% samples collected in the cultivation area and in 16 (35.5% samples obtained from commercial establishments. These results indicate the need for monitoring the quality of raw oysters, including the implantation of programs for good mollusk manipulation and management practices.

Biophysical studies of interaction between hydrolysable tannins isolated from Oenothera gigas and Geranium sanguineum with human serum albumin.

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Sekowski, Szymon; Ionov, Maksim; Kaszuba, Mateusz; Mavlyanov, Saidmukhtar; Bryszewska, Maria; Zamaraeva, Maria

2014-11-01

Tannins, secondary plant metabolites, possess diverse biological activities and can interact with biopolymers such as lipids or proteins. Interactions between tannins and proteins depend on the structures of both and can result in changes in protein structure and activity. Because human serum albumin is the most abundant protein in plasma and responsible for interactions with important biological compounds (e.g. bilirubin) and proper blood pressure, therefore, it is very important to investigate reactions between HSA and tannins. This paper describes the interaction between human serum albumin (HSA) and two tannins: bihexahydroxydiphenoyl-trigalloylglucose (BDTG) and 1-O-galloyl-4,6-hexahydroxydiphenoyl-β-d-glucose (OGβDG), isolated from Geranium sanguineum and Oenothera gigas leafs, respectively. Optical (spectrofluorimetric) and chiral optical (circular dichroism) methods were used in this study. Fluorescence analysis demonstrated that OGβDG quenched HSA fluorescence more strongly than BDTG. Both OGβDG and BDTG formed complexes with albumin and caused a red shift of the fluorescence spectra but did not significantly change the protein secondary structure. Our studies clearly demonstrate that the tested tannins interact very strongly with human serum albumin (quenching constant K=88,277.26±407.04 M(-1) and K=55,552.67±583.07 M(-1) respectively for OGβDG and BDTG) in a manner depending on their chemical structure. Copyright © 2014 Elsevier B.V. All rights reserved.

Growth and population assessment of the queen conch Strombus gigas (Mesogastropoda: Strombidae by capture mark-recapture sampling in a natural protected area of the Mexican Caribbean

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Joanne Rebecca Peel

2012-03-01

Full Text Available The Inlet of Xel-Ha is used as a park for ecotourism, representing a sanctuary for the conservation of Pink Queen Conch. Increasing fishing pressure has led to the inclusion of the species in CITES. Most knowledge about the growth of the queen conch was generated through aquaculture, ocean enclosures or obtained using estimates derived from population dynamics. In this study we estimated the growth rate of juvenile S. gigas in a natural protected area by direct methods, during the period of April 2009 to January 2011. Data was obtained by capture-mark-recapture sampling. 1418 individuals were tagged and growth of 714 conchs was analyzed. Population size and density was estimated using Schnabel’s method. The average density was estimated at 0.1694 ± 0.0996ind. m-2, while the highest density was estimated for September 2010 (0.3074ind. m-2. The highest growth rate (0.27 ± 0.10mm day-1 was detected in juveniles with an initial size between 100-149mm, followed by conch 200mm (0.08 ± 0.07mm day-1. Variability in growth rate was high in conch 100-149mm and showed seasonal differences, with the highest growth rate in May 2010. Recruitment of juveniles was highest in October 2009 and February 2010. The population of Xel-Ha has grown in size and more large and juvenile conch could be found than in previous studies, indicating that Xel-ha park is working as a sanctuary for the conservation of the queen conch in Mexico’s Riviera Maya. The growth rate of juvenile conch in Xel-Ha is high and exhibits large variations in individuals, reflecting the natural conditions of foraging and aggregation. Seasonal differences in growth rate may be associated with water quality and availability of nutrients for primary production. We conclude that the direct method is useful for the assessment of growth in juvenile S. gigas and that growth in natural conditions may be higher than in aquaculture systems. This information may be applied to fishery management as

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas.

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Haigang Qi

Full Text Available Single nucleotide polymorphisms (SNPs are widely used in genetics and genomics research. The Pacific oyster (Crassostrea gigas is an economically and ecologically important marine bivalve, and it possesses one of the highest levels of genomic DNA variation among animal species. Pacific oyster SNPs have been extensively investigated; however, the mechanisms by which these SNPs may be used in a high-throughput, transferable, and economical manner remain to be elucidated. Here, we constructed an oyster 190K SNP array using Affymetrix Axiom genotyping technology. We designed 190,420 SNPs on the chip; these SNPs were selected from 54 million SNPs identified through re-sequencing of 472 Pacific oysters collected in China, Japan, Korea, and Canada. Our genotyping results indicated that 133,984 (70.4% SNPs were polymorphic and successfully converted on the chip. The SNPs were distributed evenly throughout the oyster genome, located in 3,595 scaffolds with a length of ~509.4 million; the average interval spacing was 4,210 bp. In addition, 111,158 SNPs were distributed in 21,050 coding genes, with an average of 5.3 SNPs per gene. In comparison with genotypes obtained through re-sequencing, ~69% of the converted SNPs had a concordance rate of >0.971; the mean concordance rate was 0.966. Evaluation based on genotypes of full-sib family individuals revealed that the average genotyping accuracy rate was 0.975. Carrying 133 K polymorphic SNPs, our oyster 190K SNP array is the first commercially available high-density SNP chip for mollusks, with the highest throughput. It represents a valuable tool for oyster genome-wide association studies, fine linkage mapping, and population genetics.

Experimental infection of Pacific oyster Crassostrea gigas spat by ostreid herpesvirus 1: demonstration of oyster spat susceptibility

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Schikorski David

2011-02-01

Full Text Available Abstract In 2008 and 2009, acute mortalities occurred in France among Pacific cupped oyster, Crassostrea gigas, spat. Different hypothesis including the implication of environmental factors, toxic algae and/or pathogens have been explored. Diagnostic tests indicated that OsHV-1 including a particular genotype, termed OsHV-1 μVar, was detected in most of samples and especially in moribund oysters with the highlighting of virus particles looking like herpes viruses by TEM examination. In this study, an experimental protocol to reproduce OsHV-1 infection in laboratory conditions was developed. This protocol was based on the intramuscular injection of filtered (0.22 μm tissue homogenates prepared from naturally OsHV-1 infected spat collected on French coasts during mortality outbreaks in 2008. Results of the experimental trials showed that mortalities were induced after injection. Moreover, filtered tissue homogenates induced mortalities whereas the same tissue homogenates exposed to an ultraviolet (UV treatment did not induce any mortality suggesting that oyster spat mortalities require the presence of a UV sensitive agent. Furthermore, analysis of injected oyster spat revealed the detection of high amounts of OsHV-1 DNA by real-time quantitative PCR. Finally, TEM analysis demonstrated the presence of herpes virus particles. The developed protocol allowed to maintain sources of infective virus which can be useful for the development of further studies concerning the transmission and the development of OsHV-1 infection.

Pesticide residues, heavy metals, and DNA damage in sentinel oysters Crassostrea gigas from Sinaloa and Sonora, Mexico.

Science.gov (United States)

Vázquez-Boucard, Celia; Anguiano-Vega, Gerardo; Mercier, Laurence; Rojas del Castillo, Emilio

2014-01-01

Pesticides and heavy metals were analyzed in sentinel Crassostrea gigas oysters placed in six aquaculture sites close to a contaminated agricultural region. Each site was sampled twice. Tests revealed the presence of organochlorine (OC) pesticides in the oysters at concentrations varying from 31.8 to 72.5 μg/kg for gamma-hexachlorocyclohexane (γ-HCH); from 1.2 to 3.1 μg/kg for dichlorodiphenyldichloroethylene (4,4-DDE); from 1.6 to 2.3 μg/kg for endosulfan I; and from 1.4 to 41.2 μg/kg for endosulfan II, as well as heavy metals in concentrations that exceeded Mexican tolerance levels (405.5 to 987.8 μg/g for zinc; 4.2 to 7.3 μg/g for cadmium; and 7.2 to 9.9 μg/g for lead). Significant levels of DNA damage in oyster hemocytes were also detected. There was a significant, positive correlation between genotoxic damage and concentration of nickel or the presence of endosulfan II. Cellular viability evaluated by cytotoxic analyses was found to be high at 80%. Marked inhibition in activity of acetylcholinesterase (AChE ) and induction of glutathione S-transferase (GST) activity was noted. Data demonstrated a significant relation between AChE activity inhibition and presence of endosulfan II, γ-HCH, copper, lead, and 4,4-DDE, as well as between AChE and GST activity at different sites.

Effect of carbonate chemistry alteration on the early embryonic development of the Pacific oyster (Crassostrea gigas).

Science.gov (United States)

Gazeau, Frédéric; Gattuso, Jean-Pierre; Greaves, Mervyn; Elderfield, Henry; Peene, Jan; Heip, Carlo H R; Middelburg, Jack J

2011-01-01

Ocean acidification, due to anthropogenic CO₂ absorption by the ocean, may have profound impacts on marine biota. Calcareous organisms are expected to be particularly sensitive due to the decreasing availability of carbonate ions driven by decreasing pH levels. Recently, some studies focused on the early life stages of mollusks that are supposedly more sensitive to environmental disturbances than adult stages. Although these studies have shown decreased growth rates and increased proportions of abnormal development under low pH conditions, they did not allow attribution to pH induced changes in physiology or changes due to a decrease in aragonite saturation state. This study aims to assess the impact of several carbonate-system perturbations on the growth of Pacific oyster (Crassostrea gigas) larvae during the first 3 days of development (until shelled D-veliger larvae). Seawater with five different chemistries was obtained by separately manipulating pH, total alkalinity and aragonite saturation state (calcium addition). Results showed that the developmental success and growth rates were not directly affected by changes in pH or aragonite saturation state but were highly correlated with the availability of carbonate ions. In contrast to previous studies, both developmental success into viable D-shaped larvae and growth rates were not significantly altered as long as carbonate ion concentrations were above aragonite saturation levels, but they strongly decreased below saturation levels. These results suggest that the mechanisms used by these organisms to regulate calcification rates are not efficient enough to compensate for the low availability of carbonate ions under corrosive conditions.

Effect of carbonate chemistry alteration on the early embryonic development of the Pacific oyster (Crassostrea gigas.

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Frédéric Gazeau

Full Text Available Ocean acidification, due to anthropogenic CO₂ absorption by the ocean, may have profound impacts on marine biota. Calcareous organisms are expected to be particularly sensitive due to the decreasing availability of carbonate ions driven by decreasing pH levels. Recently, some studies focused on the early life stages of mollusks that are supposedly more sensitive to environmental disturbances than adult stages. Although these studies have shown decreased growth rates and increased proportions of abnormal development under low pH conditions, they did not allow attribution to pH induced changes in physiology or changes due to a decrease in aragonite saturation state. This study aims to assess the impact of several carbonate-system perturbations on the growth of Pacific oyster (Crassostrea gigas larvae during the first 3 days of development (until shelled D-veliger larvae. Seawater with five different chemistries was obtained by separately manipulating pH, total alkalinity and aragonite saturation state (calcium addition. Results showed that the developmental success and growth rates were not directly affected by changes in pH or aragonite saturation state but were highly correlated with the availability of carbonate ions. In contrast to previous studies, both developmental success into viable D-shaped larvae and growth rates were not significantly altered as long as carbonate ion concentrations were above aragonite saturation levels, but they strongly decreased below saturation levels. These results suggest that the mechanisms used by these organisms to regulate calcification rates are not efficient enough to compensate for the low availability of carbonate ions under corrosive conditions.

Distribution, Condition and Gonad Maturity of the Invasive Pacific Oysters (Crassostrea Gigas, Thunberg 1793 in Cimanuk Delta, Indramayu, West Java, Indonesia

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Selia Hermawati

2017-11-01

Full Text Available Pacific oyster (Crassostrea gigas is an invasive species which is able to adapt a wide range of environmental conditions. The study was conducted from August to October 2014. Objective of this study was to asses the distribution pattern, condition and gonad maturity length (Lm 50% of the Pacific oysters in mangrove ecosystem of Cimanuk Delta, Indramayu, West Java, Indonesia.  This study was conducted in two adjacent areas:  Pabean Ilir and Pagirikan subdeltas. The oysters were collected from the estuary, brackish water ponds and the coastal flat, and  observed for their abundance, total length (mm and weight (g. Morphological and histological methods were used to estimate the gonad maturity stage. Analysis were carried out to estimate distribution pattern and condition factor. According to the study, the Pacific oyster distribution pattern was clumped. The condition factor of the oyster was higher in the brackish water pond and estuary than in the coastal flat.  The Pacific oyster was found in gonad maturity stage (GMS I – IV. The oyster was hermaprodit protandry and had length maturity (Lm 50% of 47,46-48,43 mm (male and 75,27-75,50  mm (female.

Nutritional quality in terms of lipid content and fatty acid composition of neutral and polar lipids in the adductor muscle of the oyster Crassostrea gigas (Thunberg, 1794 farmed in the Bizert lagoon (Tunisia in relation with sexual cycle and environmental settings

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Salwa Dridi

2017-12-01

Full Text Available Monthly variations of fatty acid composition of the two fractions polar lipids (PL and neutral lipids (NL in the adductor muscle of cupped oyster Crassostrea gigas, were studied from May 2005 until June 2006 in the Bizert lagoon, related to environmental parameters and reproductive events. C. gigas showed a clear cycle of energy storage and utilization in the site of study. Total PL and NL content varied significantly during the year and showed a negative and significant correlation with the gametogenic condition index which can be explained by transfer of fatty acids from the adductor muscle to gonads to support the gametogenic cycle. Nevertheless, PL and NL have no significant correlations either with temperature or chlorophyll a registered in the site of study. The adductor muscle proved to be less influenced by chlorophyll a richness of the farming environment. The dominance of total polyunsaturated fatty acids (PUFAs over the saturated fatty acids (SFAs and monounsaturated fatty acids (MUFAs in both PL and NL fractions was established throughout the period of study. Oysters analyzed were characterized by high levels of PUFAs n−3 and high n−3/n−6 PUFAs ratio in both PL and NL fractions. PUFAs n−3 and SFAs of PL and PUFAs and SFAs of NL, showed a negative and significant correlation between them. In fact, low temperature values produce generally an increase in the PUFAs percentages in order to maintain the fluidity of cell membranes. We deduce that annual variations of fatty acids content in PL and NL fractions of the adductor muscle of C. gigas seem to be in relation with the reproductive events. According to our results, the adductor muscle tissues were relatively poor in fatty acids (maximum values (% of dry weight of PL and NL respectively were 2.04 ± 0.33 and 1.75 ± 0.9. Lipids fluctuations were not pronounced all over the period of study in the site of sampling due to low effects of the environment richness and phases of

Análise espacial da distribuição de cigarras (Quesada gigas Oliver em povoamentos de paricá (Schizolobium amazonicum Huber ex Ducke na região de Dom Eliseu, PA Analysis of the spatial distribution of buzzers (Quesada gigas Oliver in parica stands(Schizolobium amazonicum Huber ex Ducke in Dom Eliseu-PA

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Vicente Paulo Soares

2008-04-01

Full Text Available O objetivo deste estudo foi avaliar, através da análise espacial de dados geográficos, a precisão de procedimentos de mapeamento das populações de cigarras (Quesada gigas Oliver em povoamentos de paricá (Schizolobium amazonicum Huber ex Ducke, localizados no Município de Dom Eliseu, PA, mediante a aplicação de dois interpoladores (krigagem e inverso do quadrado da distância. Para tal, foram registradas amostras na intensidade de um ponto a cada 30 ha, onde se realizou a contagem do número de cigarras por planta (cigarras/árvore, obedecendo à estratégia de amostragem convencionalmente usada pela empresa proprietária do reflorestamento em estudo. As análises indicaram que a intensidade amostral empregada neste trabalho não foi suficiente para permitir a detecção de forte dependência espacial do número de cigarras/árvore nas áreas estudadas. Devido a essa baixa dependência espacial, os resultados dos dois métodos de interpolação (krigagem ordinária e inverso do quadrado da distância apresentaram-se semelhantes. Já os deste trabalho indicaram que as estratégias de amostragem utilizadas devem ser melhoradas para gerar mapas de predição mais precisos da quantidade de cigarras/árvore nos reflorestamentos de paricá.The objective of this study was to evaluate the occurrence of buzzers (Quesada gigas Oliver in Parica (Schizlobium amazonicum Huber ex Ducke stands using spatial geographic data analysis, in Dom Eliseu, Para, Brazil, based on the application of two interpolators (kriging and distance square inverse.Thus, points were set up in a density of one point for every 30 hectares, with one tree sampled per point, obeying the sample strategy conventionally used by the company which owns the reforestation stand under study. The analysis indicated that the sampling intensity utilized in this work was not sufficient to allow a strong spatial dependence of the number of buzzers/tree in the study area. Due to this low

Potential use of stable isotope and fatty acid analyses for traceability of geographic origins of jumbo squid (Dosidicus gigas).

Science.gov (United States)

Gong, Yi; Li, Yunkai; Chen, Xinjun; Chen, Ling

2018-04-15

Squid is an important seafood resource for Asian and European countries. With the continuous development of processed squid products, an effective traceability system has become increasingly prominent. Here, we attempt to trace the fishery products of the main target species, jumbo squid (Dosidicus gigas), by using biochemical tracers. Carbon and nitrogen isotope ratios (δ 13 C and δ 15 N values) and fatty acid profiles were identified in squid from three harvest locations in the eastern Pacific Ocean by isotope ratio mass spectrometry and gas chromatography/mass spectrometry, respectively. Comparative analysis was used to evaluate the geographic variations in tracers and to identify the suitable discriminatory variables among origins. Significant spatial variations were found in isotopic values and fatty acid profiles in squid muscle tissues, possibly because of different food availability and/or oceanographic conditions that each group experiences at a given location. The stepwise discriminant analysis indicated that δ 15 N, C16:1n7, C17:1n7, C18:2n6, C20:1 and C20:4n6 were effective variables at differentiating origin. Combined use of stable isotope ratios and fatty acid analyses could trace geographic origins of jumbo squid. This study provides an alternative approach for improving authenticity evaluation of commercial squid products. Copyright © 2018 John Wiley & Sons, Ltd.

Antioxidant deficit in gills of Pacific oyster (Crassostrea gigas) exposed to chlorodinitrobenzene increases menadione toxicity

International Nuclear Information System (INIS)

Trevisan, Rafael; Arl, Miriam; Sacchet, Cássia Lopes; Engel, Cristiano Severino; Danielli, Naissa Maria; Mello, Danielle Ferraz; Brocardo, Caroline; Maris, Angelica Francesca; Dafre, Alcir Luiz

2012-01-01

Disturbances in antioxidant defenses decrease cellular protection against oxidative stress and jeopardize cellular homeostasis. To knock down the antioxidant defenses of Pacific oyster Crassostrea gigas, animals were pre-treated with 1-chloro-2,4-dinitrobenzene (CDNB) and further challenged with pro-oxidant menadione (MEN). CDNB pre-treatment (10 μM for 18 h) was able to consume cellular thiols in gills, decreasing GSH (53%) and decrease protein thiols (25%). CDNB pre-treatment also disrupted glutathione reductase and thioredoxin reductase activity in the gills, but likewise strongly induced glutathione S-transferase activity (270% increase). Surprisingly, hemocyte viability was greatly affected 24 h after CDNB removal, indicating a possible vulnerability of the oyster immune system to electrophilic attack. New in vivo approaches were established, allowing the identification of higher rates of GSH–CDNB conjugate export to the seawater and enabling the measurement of the organic peroxide consumption rate. CDNB-induced impairment in antioxidant defenses decreased the peroxide removal rate from seawater. After showing that CDNB decreased gill antioxidant defenses and increased DNA damage in hemocytes, oysters were further challenged with 1 mM MEN over 24 h. MEN treatment did not affect thiol homeostasis in gills, while CDNB pre-treated animals recovered GSH and PSH to the control level after 24 h of depuration. Interestingly, MEN intensified GSH and PSH loss and mortality in CDNB-pre-treated animals, showing a clear synergistic effect. The superoxide-generating one-electron reduction of MEN was predominant in gills and may have contributed to MEN toxicity. These results support the idea that antioxidant-depleted animals are more susceptible to oxidative attack, which can compromise survival. Data also corroborate the idea that gills are an important detoxifying organ, able to dispose of organic peroxides, induce phase II enzymes, and efficiently export GSH�

Antioxidant deficit in gills of Pacific oyster (Crassostrea gigas) exposed to chlorodinitrobenzene increases menadione toxicity

Energy Technology Data Exchange (ETDEWEB)

Trevisan, Rafael; Arl, Miriam [Departamento de Bioquimica, Universidade Federal de Santa Catarina, 88040-900 Florianopolis, SC (Brazil); Sacchet, Cassia Lopes [Universidade do Oeste do Estado de Santa Catarina, 89600-000 Joacaba, SC (Brazil); Engel, Cristiano Severino; Danielli, Naissa Maria; Mello, Danielle Ferraz [Departamento de Bioquimica, Universidade Federal de Santa Catarina, 88040-900 Florianopolis, SC (Brazil); Brocardo, Caroline [Universidade do Oeste do Estado de Santa Catarina, 89600-000 Joacaba, SC (Brazil); Maris, Angelica Francesca [Departamento de Biologia Celular, Embriologia e Genetica, Universidade Federal de Santa Catarina, 88040-900 Florianopolis, SC (Brazil); Dafre, Alcir Luiz, E-mail: alcir@ccb.ufsc.br [Departamento de Bioquimica, Universidade Federal de Santa Catarina, 88040-900 Florianopolis, SC (Brazil)

2012-02-15

Disturbances in antioxidant defenses decrease cellular protection against oxidative stress and jeopardize cellular homeostasis. To knock down the antioxidant defenses of Pacific oyster Crassostrea gigas, animals were pre-treated with 1-chloro-2,4-dinitrobenzene (CDNB) and further challenged with pro-oxidant menadione (MEN). CDNB pre-treatment (10 {mu}M for 18 h) was able to consume cellular thiols in gills, decreasing GSH (53%) and decrease protein thiols (25%). CDNB pre-treatment also disrupted glutathione reductase and thioredoxin reductase activity in the gills, but likewise strongly induced glutathione S-transferase activity (270% increase). Surprisingly, hemocyte viability was greatly affected 24 h after CDNB removal, indicating a possible vulnerability of the oyster immune system to electrophilic attack. New in vivo approaches were established, allowing the identification of higher rates of GSH-CDNB conjugate export to the seawater and enabling the measurement of the organic peroxide consumption rate. CDNB-induced impairment in antioxidant defenses decreased the peroxide removal rate from seawater. After showing that CDNB decreased gill antioxidant defenses and increased DNA damage in hemocytes, oysters were further challenged with 1 mM MEN over 24 h. MEN treatment did not affect thiol homeostasis in gills, while CDNB pre-treated animals recovered GSH and PSH to the control level after 24 h of depuration. Interestingly, MEN intensified GSH and PSH loss and mortality in CDNB-pre-treated animals, showing a clear synergistic effect. The superoxide-generating one-electron reduction of MEN was predominant in gills and may have contributed to MEN toxicity. These results support the idea that antioxidant-depleted animals are more susceptible to oxidative attack, which can compromise survival. Data also corroborate the idea that gills are an important detoxifying organ, able to dispose of organic peroxides, induce phase II enzymes, and efficiently export GSH

Hemocyte parameters of the Pacific oyster Crassostrea gigas a year after the Hebei Spirit oil spill off the west coast of Korea

Science.gov (United States)

Donaghy, Ludovic; Hong, Hyun-Ki; Lee, Hee-Jung; Jun, Je-Cheon; Park, Young-Je; Choi, Kwang-Sik

2010-12-01

In marine bivalves, hemocytes support various physiological functions, including immune defense, nutrient transport, shell repair, and homeostatic maintenance. Although the effects of marine contaminants on the immunological functions of bivalves have been extensively investigated, the impacts of oil spills are not well understood. Therefore, we investigated hemocyte parameters in the Pacific oyster Crassostrea gigas 13 months after the Hebei Spirit oil spill (December 2007) off the west coast of Korea. The parameters studied included hemocyte concentration and mortality, relative proportion of hemocyte populations, and immunological functions such as phagocytosis and oxidative activity using flow cytometry. These immune-related parameters in oysters damaged by the oil spill were also compared to control oysters that were collected from an area unaffected by the spill. The flow cytometry study indicated that granulocyte population, phagocytic capacity, and reactive oxygen species production in oysters exposed to crude oil 13 months prior were depressed compared to the unexposed control oysters. Our data suggest that immunocompetence in oysters affected by the oil spill had not fully recovered 1 year after the accident, although more detailed studies on the physiology and disease resistance should be performed.

Growth and population assessment of the queen conch Strombus gigas (Mesogastropoda: Strombidae by capture mark-recapture sampling in a natural protected area of the Mexican Caribbean

Directory of Open Access Journals (Sweden)

Joanne Rebecca Peel

2012-03-01

Full Text Available The Inlet of Xel-Ha is used as a park for ecotourism, representing a sanctuary for the conservation of Pink Queen Conch. Increasing fishing pressure has led to the inclusion of the species in CITES. Most knowledge about the growth of the queen conch was generated through aquaculture, ocean enclosures or obtained using estimates derived from population dynamics. In this study we estimated the growth rate of juvenile S. gigas in a natural protected area by direct methods, during the period of April 2009 to January 2011. Data was obtained by capture-mark-recapture sampling. 1418 individuals were tagged and growth of 714 conchs was analyzed. Population size and density was estimated using Schnabel’s method. The average density was estimated at 0.1694 ± 0.0996ind. m-2, while the highest density was estimated for September 2010 (0.3074ind. m-2. The highest growth rate (0.27 ± 0.10mm day-1 was detected in juveniles with an initial size between 100-149mm, followed by conch 200mm (0.08 ± 0.07mm day-1. Variability in growth rate was high in conch 100-149mm and showed seasonal differences, with the highest growth rate in May 2010. Recruitment of juveniles was highest in October 2009 and February 2010. The population of Xel-Ha has grown in size and more large and juvenile conch could be found than in previous studies, indicating that Xel-ha park is working as a sanctuary for the conservation of the queen conch in Mexico’s Riviera Maya. The growth rate of juvenile conch in Xel-Ha is high and exhibits large variations in individuals, reflecting the natural conditions of foraging and aggregation. Seasonal differences in growth rate may be associated with water quality and availability of nutrients for primary production. We conclude that the direct method is useful for the assessment of growth in juvenile S. gigas and that growth in natural conditions may be higher than in aquaculture systems. This information may be applied to fishery management as

Camallanus tridentatus (Drasche) (Nematoda: Camallanidae): new taxonomically important morphological data

Czech Academy of Sciences Publication Activity Database

Santos, C. P.; Moravec, František

2009-01-01

Roč. 104, č. 1 (2009), s. 93-99 ISSN 1678-8060 R&D Projects: GA ČR(CZ) GA524/06/0170 Institutional research plan: CEZ:AV0Z60220518 Keywords : Camallanus * Arapaima * Brazil Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine

Giga-LES of Hector the Convector keeping the tallest updrafts undiluted

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Dauhut, Thibaut; Chaboureau, Jean-Pierre; Escobar, Juan; Mascart, Patrick

2015-04-01

The trend of stratospheric water vapour during the past decades is not correctly reproduced by current GCMs. This may be due to lack of representation of rapid water transfers from troposphere to stratosphere. Our modeling study focused on a particular case of tropical very deep convection which takes an active part in this transport. We aimed at understanding its dynamics and the stratosphere moistening processes. We selected a Hector thunderstorm observed on 30 November 2005 over Tiwi Islands, Australia, during the SCOUT-O3 field campaign. Plumes of ice particles reaching 19 km altitude were measured by lidar aboard the Geophysica stratospheric aircraft. We performed a Giga Large-Eddy Simulation of Hector (100 m horizontal resolution, more than 1 billion grid points) using cutting-edge computing resources, as well as a series of simulations with coarser and coarser horizontal resolutions, from 200 m to 1600 m. A strong morning sea breeze deviated boundary layer westerlies and led to intense convergence of humid air over Tiwi Islands. Deep convection triggered around 12:15 pm and quickly reached 14 km altitude. The associated cold pools organised and generated upward motions at the surface. The most intense upward transport started 1 hour later and lasted around 2 hours. As a result, a couple of updrafts overshot the tropopause carrying ice crystals in the stratosphere. Part of the ice particles precipitated then whereas the remainder sublimated in the lower stratosphere. The consequent vapour pockets were transported and diluted within the stratosphere by easterlies. While moistening appeared to be robust with respect to the grid spacing used, grid spacing on the order of 100 m may be necessary for a reliable estimate of hydration (Dauhut et al. ASL 2014, doi: 10.1002/asl2.534). A comprehensive analysis of individual updrafts and their properties once sorted by their height has been carried out. The couple of updrafts that reach the stratosphere presents a higher

New data on the morphology of Nilonema senticosum (Nematoda, Philometridae), a parasite of Arapaima gigas (Pisces), with notes on another philometrid, Alinema amazonicum, in Peru

Czech Academy of Sciences Publication Activity Database

Moravec, František; Scholz, Tomáš; Kuchta, Roman; Dyková, Iva; Posel, P.

2006-01-01

Roč. 51, č. 4 (2006), s. 279-285 ISSN 1230-2821 R&D Projects: GA ČR(CZ) GA524/06/0170; GA ČR GA524/04/0342; GA ČR GD524/03/H133; GA MŠk LC522 Institutional research plan: CEZ:AV0Z60220518 Keywords : Nilonema * Alinema * Peru Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 0.772, year: 2006

Anti-Brucella Antibodies in Moose (Alces alces gigas), Muskoxen (Ovibos moschatus), and Plains Bison (Bison bison bison) in Alaska, USA.

Science.gov (United States)

Nymo, Ingebjørg Helena; Beckmen, Kimberlee; Godfroid, Jacques

2016-01-01

We used an indirect enzyme-linked immunosorbent assay (iELISA) and the rose bengal test (RBT) to test for anti-Brucella antibodies in moose (Alces alces gigas), muskoxen (Ovibos moschatus), and plains bison (Bison bison bison) from various game management units (GMUs) in Alaska, US, sampled from 1982 to 2010. A portion of the sera had previously been tested with the standard plate test (SPT), the buffered Brucella antigen (BBA) card test, and the card test (CARD). No antibody-positive plains bison were identified. Anti-Brucella antibodies were detected in moose (iELISA, n=4/87; RBT, n=4/87; SPT, n=4/5; BBA, n=4/4) from GMU 23 captured in 1992, 1993, and 1995 and in muskoxen (iELISA, n=4/52; RBT, n=4/52; CARD, n=4/35) from GMUs 26A and 26B captured in 2004, 2006, and 2007. A negative effect of infection on the health of individuals of these species is probable. The presence of antibody-positive animals from 1992 to 2007 suggests presence of brucellae over time. The antibody-positive animals were found in northern Alaska, an area with a historically higher prevalence of Brucella-positive caribou, and a spillover of Brucella suis biovar 4 from caribou may have occurred. Brucella suis biovar 4 causes human brucellosis, and transmission from consumption of moose and muskoxen is possible.

Finite element modeling of multilayered structures of fish scales.

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Chandler, Mei Qiang; Allison, Paul G; Rodriguez, Rogie I; Moser, Robert D; Kennedy, Alan J

2014-12-01

The interlinked fish scales of Atractosteus spatula (alligator gar) and Polypterus senegalus (gray and albino bichir) are effective multilayered armor systems for protecting fish from threats such as aggressive conspecific interactions or predation. Both types of fish scales have multi-layered structures with a harder and stiffer outer layer, and softer and more compliant inner layers. However, there are differences in relative layer thickness, property mismatch between layers, the property gradations and nanostructures in each layer. The fracture paths and patterns of both scales under microindentation loads were different. In this work, finite element models of fish scales of A. spatula and P. senegalus were built to investigate the mechanics of their multi-layered structures under penetration loads. The models simulate a rigid microindenter penetrating the fish scales quasi-statically to understand the observed experimental results. Study results indicate that the different fracture patterns and crack paths observed in the experiments were related to the different stress fields caused by the differences in layer thickness, and spatial distribution of the elastic and plastic properties in the layers, and the differences in interface properties. The parametric studies and experimental results suggest that smaller fish such as P. senegalus may have adopted a thinner outer layer for light-weighting and improved mobility, and meanwhile adopted higher strength and higher modulus at the outer layer, and stronger interface properties to prevent ring cracking and interface cracking, and larger fish such as A. spatula and Arapaima gigas have lower strength and lower modulus at the outer layers and weaker interface properties, but have adopted thicker outer layers to provide adequate protection against ring cracking and interface cracking, possibly because weight is less of a concern relative to the smaller fish such as P. senegalus. Published by Elsevier Ltd.

In vivo effects of metaldehyde on Pacific oyster, Crassostrea gigas: comparing hemocyte parameters in two oyster families.

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Moreau, Pierrick; Burgeot, Thierry; Renault, Tristan

2015-06-01

Pollutants via run-off into the ocean represent a potential threat to marine organisms, especially bivalves such as oysters living in coastal environments. These organisms filter large volumes of seawater and may accumulate contaminants within their tissues. Pesticide contamination in water could have a direct or indirect toxic action on tissues or cells and could induce alteration of immune system. Bivalve immunity is mainly supported by hemocytes and participates directly by phagocytosis to eliminate pathogens. Some studies have shown that pesticides can reduce immune defences and/or modify genomes in vertebrates and invertebrates. Metaldehyde is used to kill slugs, snails and other terrestrial gastropods. Although metaldehyde has been detected in surface waters, its effects on marine bivalves including the Pacific oyster, Crassostrea gigas, have never been studied. Given the mode of action of this molecule and its targets (molluscs), it could be potentially more toxic to oysters than other pesticides (herbicides, fungicides, insecticides, etc.). Effects of metaldehyde on oyster hemocyte parameters were thus monitored through in vivo experiments based on a short-term exposure. In this work, metaldehyde at 0.1 μg/L, which corresponds to an average concentration detected in the environment, modulated hemocyte activities of Pacific oysters after an in vivo short-term contact. Individuals belonging to two families showed different behaviours for some hemocyte activities after contamination by metaldehyde. These results suggested that effects of pollutants on oysters may differ from an individual to another in relation to genetic diversity. Finally, it appears essential to take an interest in the effects of metaldehyde on a wide variety of aquatic invertebrates including those that have a significant economic impact.

Trails of river monsters: Detecting critically endangered Mekong giant catfish Pangasianodon gigas using environmental DNA

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Bellemain Eva

2016-07-01

Full Text Available Pressures on freshwater biodiversity in Southeast Asia are accelerating, yet the status and conservation needs of many of the region’s iconic fish species are poorly known. The Mekong is highly species diverse and supports four of the six largest freshwater fish globally, three of which, including Mekong giant catfish (Pangasianodon gigas, are Critically Endangered. Emerging environmental DNA (eDNA techniques have potential for monitoring threatened freshwater biodiversity, yet have not been applied in complex and biodiverse tropical ecosystems such as the Mekong. We developed species-specific primers for amplifying Mekong giant catfish DNA. In situ validation demonstrated that the DNA amplification was successful for all samples taken in reservoirs with known presence of Mekong giant catfish independent of fish density. We collected water samples from six deep pools on the Mekong, identified through Local Ecological Knowledge, in Cambodia, Lao PDR, and Thailand. DNA was extracted and amplified from these samples using the designed primers and probes. Mekong giant catfish DNA was detected from one sample from the species’ presumed spawning grounds on the Mekong mainstream, near the border between northern Thailand and Lao PDR. eDNA sampling using species-specific primers has potential for surveying and monitoring poorly known species from complex tropical aquatic environments. However accounting for false absences is likely to be required for the method to function with precision when applied to extremely rare species that are highly dispersed within a large river system. We recommend that such approach be utilised more widely by freshwater conservation practitioners for specific applications. The method is best suited for baseline biodiversity assessments or to identify and prioritise locations for more rigorous sampling. Our methods are particularly relevant for systems or species with limited baseline data or with physical characteristics

Transcriptional changes in Crassostrea gigas oyster spat following a parental exposure to the herbicide diuron.

Science.gov (United States)

Rondon, R; Akcha, F; Alonso, P; Menard, D; Rouxel, J; Montagnani, C; Mitta, G; Cosseau, C; Grunau, C

2016-06-01

The Pacific oyster Crassostrea gigas is the main oyster species produced in the world, and a key coastal economic resource in France. High mortalities affect Pacific oysters since 2008 in France and Europe. Their origins have been attributed to a combination of biotic and abiotic factors, underlining the importance of environment quality. The impact of water pollution has been pointed out and one of the pollutants, the genotoxic herbicide diuron, occurs at high concentrations all along the French coasts. Previous work has revealed that a parental exposure to diuron had a strong impact on hatching rates and offspring development even if spats were not exposed to diuron themselves. In this study, we explored for the first time the transcriptional changes occurring in oyster spats (non exposed) originating from genitors exposed to an environmentally relevant concentration of diuron during gametogenesis using the RNAseq methodology. We identified a transcriptomic remodeling revealing an effect of the herbicide. Different molecular pathways involved in energy production, translation and cell proliferation are particularly disturbed. This analysis revealed modulated candidate genes putatively involved in response to oxidative stress and mitochondrial damage in offspring of genitors exposed to diuron. Complementary measures of the activity of enzymes involved in these latter processes corroborate the results obtained at the transcriptomic level. In addition, our results suggested an increase in energy production and mitotic activity in 5-month-spats from diuron-exposed genitors. These results could correspond to a "catch-up growth" phenomenon allowing the spats from diuron-exposed genitors, which displayed a growth delay at 3 months, to gain a normal size when they reach the age of 6 months. These results indicate that exposure to a concentration of diuron that is frequently encountered in the field during the oyster's gametogenesis stage can impact the next generation

Cultivo de la ostra Crassostrea gigas (Thunberg, 1795 en un vivero artesanal, La arena, Casma

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Paul Baltazar

2014-06-01

Full Text Available El presente trabajo describe la metodología empleada para el cultivo de la ostra del Pacífico Crassostrea gigas en un vivero artesanal, en el Centro Acuícola La Arena, Casma. Se utilizó reproductores en fase intermedia de madurez gonádica procedentes de líneas de cultivo del Centro Acuícola. El acondicionamiento se realizó en tanques de fibra de vidrio de 1000 L, con agua de mar sin filtrar a una temperatura de 27 ± 0,9 oC; adicionalmente se les alimentó con fécula de maíz y microalgas obtenidas en el lugar y cultivadas al aire libre. El desove se indujo para un grupo sólo por estimulación térmica (30 a 31 oC y para el otro se añadió además peróxido de hidrógeno, a lo cual se presentaron respuestas diferentes. A los 20 minutos después de la fertilización se observó, en el 100% de huevos fecundados, el cuerpo polar definido y a las 24 horas las larvas veliger. Las larvas alcanzaron el estado de pediveliger luego de 20 días de cultivo, con tallas promedios de 237 ± 10 µm. Para la fijación de las larvas se utilizó conchuela molida (300 µm, plástico negro lijado y valvas de ostras. A los 33 días se obtuvieron semillas con tallas medias de 1262 ± 204 µm las que fueron colocadas en pearl net para su desarrollo en el mar. A los 30 días de la siembra en el mar, la talla promedio de las postlarvas alcanzó los 13,4 ± 3,4 mm. El trabajo muestra las ventajas de la metodología descrita en la producción masiva de semillas en un vivero artesanal.

Transcriptomic profiling of gametogenesis in triploid Pacific Oysters Crassostrea gigas: towards an understanding of partial sterility associated with triploidy.

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Nolwenn M Dheilly

Full Text Available Triploidy can occur in many animal species but is often lethal. Among invertebrates, amphibians and fishes, triploids are viable although often sterile or infertile. Most triploids of the Pacific oyster Crassostrea gigas are almost sterile (named "3nβ" yet a low but significant proportion show an advanced gametogenesis (named "3nα". These oysters thus constitute an interesting model to study the effect of triploidy on germ cell development. We used microarrays to compare the gonad transcriptomes of diploid 2n and the abovementioned triploid 3nβ and 3nα male and female oysters throughout gametogenesis.All triploids displayed an upregulation of genes related to DNA repair and apoptosis and a downregulation of genes associated with cell division. The comparison of 3nα and 3nβ transcriptomes with 2n revealed the likely involvement of a cell cycle checkpoint during mitosis in the successful but delayed development of gonads in 3nα individuals. In contrast, a disruption of sex differentiation mechanisms may explain the sterility of 3nβ individuals with 3nβ females expressing male-specific genes and 3nβ males expressing female-specific genes.The disruption of sex differentiation and mitosis may be responsible for the impaired gametogenesis of triploid Pacific oysters. The function of the numerous candidate genes identified in our study should now be studied in detail in order to elucidate their role in sex determination, mitosis/meiosis control, pachytene cell cycle checkpoint, and the control of DNA repair/apoptosis.

Pacific oyster (Crassostrea gigas) hemocyte are not affected by a mixture of pesticides in short-term in vitro assays.

Science.gov (United States)

Moreau, Pierrick; Burgeot, Thierry; Renault, Tristan

2014-04-01

Pesticides are frequently detected in estuaries among the pollutants found in estuarine and coastal areas and may have major ecological consequences. They could endanger organism growth, reproduction, or survival. In the context of high-mortality outbreaks affecting Pacific oysters, Crassostrea gigas, in France since 2008, it appears of importance to determine the putative effects of pesticides on oyster susceptibility to infectious agents. Massive mortality outbreaks reported in this species, mainly in spring and summer, may suggest an important role played by the seasonal use of pesticides and freshwater input in estuarine areas where oyster farms are frequently located. To understand the impact of some pesticides detected in French waters, their effects on Pacific oyster hemocytes were studied through short-term in vitro experiments. Bivalve immunity is mainly supported by hemocytes eliminating pathogens by phagocytosis and producing compounds including lysosomal enzymes and antimicrobial molecules. In this study, oyster hemocytes were incubated with a mixture of 14 pesticides and metaldehyde alone, a molecule used to eliminate land mollusks. Hemocyte parameters including dead/alive cells, nonspecific esterase activities, intracytoplasmic calcium, lysosome number and activity, and phagocytosis were monitored by flow cytometry. No significant effect of pesticides tested at different concentrations was reported on oyster hemocytes maintained in vitro for short-term periods in the present study. It could be assumed that these oyster cells were resistant to pesticide exposure in tested conditions and developing in vivo assays appears as necessary to better understand the effects of pollutants on immune system in mollusks.

Characteristic and functional analysis of toll-like receptors (TLRs in the lophotrocozoan, Crassostrea gigas, reveals ancient origin of TLR-mediated innate immunity.

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Yang Zhang

Full Text Available The evolution of TLR-mediated innate immunity is a fundamental question in immunology. Here, we report the characterization and functional analysis of four TLR members in the lophotrochozoans Crassostreagigas (CgTLRs. All CgTLRs bear a conserved domain organization and have a close relationship with TLRs in ancient non-vertebrate chordates. In HEK293 cells, every CgTLR could constitutively activate NF-κB responsive reporter, but none of the PAMPs tested could stimulate CgTLR-activated NF-κB induction. Subcellular localization showed that CgTLR members have similar and dual distribution on late endosomes and plasma membranes. Moreover, CgTLRs and CgMyD88 mRNA show a consistent response to multiple PAMP challenges in oyster hemocytes. As CgTLR-mediated NF-κB activation is dependent on CgMyD88, we designed a blocking peptide for CgTLR signaling that would inhibit CgTLR-CgMyD88 dependent NF-κB activation. This was used to demonstrate that a Vibrio parahaemolyticus infection-induced enhancement of degranulation and increase of cytokines TNF mRNA in hemocytes, could be inhibited by blocking CgTLR signaling. In summary, our study characterized the primitive TLRs in the lophotrocozoan C. gigas and demonstrated a fundamental role of TLR signaling in infection-induced hemocyte activation. This provides further evidence for an ancient origin of TLR-mediated innate immunity.

Rapid method for controlling the correct labeling of products containing common octopus (Octopus vulgaris) and main substitute species (Eledone cirrhosa and Dosidicus gigas) by fast real-time PCR.

Science.gov (United States)

Espiñeira, Montserrat; Vieites, Juan M

2012-12-15

The TaqMan real-time PCR has the highest potential for automation, therefore representing the currently most suitable method for screening, allowing the detection of fraudulent or unintentional mislabeling of species. This work describes the development of a real-time polymerase chain reaction (RT-PCR) system for the detection and identification of common octopus (Octopus vulgaris) and main substitute species (Eledone cirrhosa and Dosidicus gigas). This technique is notable for the combination of simplicity, speed, sensitivity and specificity in an homogeneous assay. The method can be applied to all kinds of products; fresh, frozen and processed, including those undergoing intensive processes of transformation. This methodology was validated to check how the degree of food processing affects the method and the detection of each species. Moreover, it was applied to 34 commercial samples to evaluate the labeling of products made from them. The methodology herein developed is useful to check the fulfillment of labeling regulations for seafood products and to verify traceability in commercial trade and for fisheries control. Copyright © 2012 Elsevier Ltd. All rights reserved.

Hemolymph chemistry and histopathological changes in Pacific oysters (Crassostrea gigas) in response to low salinity stress.

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Knowles, Graeme; Handlinger, Judith; Jones, Brian; Moltschaniwskyj, Natalie

2014-09-01

This study described seasonal differences in the histopathological and hemolymph chemistry changes in different family lines of Pacific oysters, Crassostrea gigas, in response to the stress of an abrupt change to low salinity, and mechanical grading. The most significant changes in pallial cavity salinity, hemolymph chemistry and histopathological findings occurred in summer at low salinity. In summer (water temperature 18°C) at low salinity, 9 (25.7% of full salinity), the mean pallial cavity salinity in oysters at day 3 was 19.8±1.6 (SE) and day 10 was 22.8±1.6 (SE) lower than oysters at salinity 35. Associated with this fall in pallial cavity salinity, mean hemolymph sodium for oysters at salinity 9 on day 3 and 10 were 297.2mmol/L±20(SE) and 350.4mmol/L±21.3(SE) lower than oysters at salinity 35. Similarly mean hemolymph potassium in oysters held at salinity 9 at day 3 and 10 were 5.6mmol/L±0.6(SE) and 7.9mmol/L±0.6 (SE) lower than oysters at salinity 35. These oysters at low salinity had expanded intercellular spaces and significant intracytoplasmic vacuolation distending the cytoplasm of epithelial cells in the alimentary tract and kidney and hemocyte infiltrate (diapedesis) within the alimentary tract wall. In contrast, in winter (water temperature 8°C) oyster mean pallial cavity salinity only fell at day 10 and this was by 6.0±0.6 (SE) compared to that of oysters at salinity 35. There were limited histopathological changes (expanded intercellular spaces and moderate intracytoplasmic vacuolation of renal epithelial cells) in these oysters at day 10 in low salinity. Mechanical grading and family line did not influence the oyster response to sudden low salinity. These findings provide additional information for interpretation of non-lethal, histopathological changes associated with temperature and salinity variation. Copyright © 2014 Elsevier Inc. All rights reserved.

The Molecular Differentiation of Anatomically Paired Left and Right Mantles of the Pacific Oyster Crassostrea gigas.

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Wei, Lei; Xu, Fei; Wang, Yuzhi; Cai, Zhongqiang; Yu, Wenchao; He, Cheng; Jiang, Qiuyun; Xu, Xiqiang; Guo, Wen; Wang, Xiaotong

2018-03-28

Left-right (L-R) asymmetry is controlled by gene regulation pathways for the L-R axis, and in vertebrates, the gene Pitx2 in TGF-β signaling pathway plays important roles in the asymmetrical formation of organs. However, less is known about the asymmetries of anatomically identical paired organs, as well as the transcriptional regulation mechanism of the gene Pitx in invertebrates. Here, we report the molecular biological differences between the left and right mantles of an invertebrate, the Pacific oyster Crassostrea gigas, and propose one possible mechanism underlying those differences. RNA sequencing (RNA-seq) analysis indicated that the paired organs showed different gene expression patterns, suggesting possible functional differences in shell formation, pheromone signaling, nerve conduction, the stress response, and other physiological processes. RNA-seq and real-time qPCR analysis indicated high right-side expression of the Pitx homolog (cgPitx) in oyster mantle, supporting a conserved role for Pitx in controlling asymmetry. Methylation-dependent restriction-site associated DNA sequencing (MethylRAD) identified a methylation site in the promoter region of cgPitx and showed significantly different methylation levels between the left and right mantles. This is the first report, to our knowledge, of such a difference in methylation in spiralians, and it was further confirmed in 18 other individuals by using a pyrosequencing assay. The miRNome analysis and the TGF-β receptor/Smad inhibition experiment further supported that several genes in TGF-β signaling pathway may be related with the L/R asymmetry of oyster mantles. These results suggested that the molecular differentiation of the oyster's paired left and right mantles is significant, TGF-β signaling pathway could be involved in establishing or maintaining the asymmetry, and the cgPitx gene as one of genes in this pathway; the different methylation levels in its promoter regions between L/R mantles was

A Preliminary Study on the Pattern, the Physiological Bases and the Molecular Mechanism of the Adductor Muscle Scar Pigmentation in Pacific Oyster Crassostrea gigas

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Wenchao Yu

2017-09-01

Full Text Available The melanin pigmentation of the adductor muscle scar and the outer surface of the shell are among attractive features and their pigmentation patterns and mechanism still remains unknown in the Pacific oyster Crassostrea gigas. To study these pigmentation patterns, the colors of the adductor muscle scar vs. the outer surface of the shell on the same side were compared. No relevance was found between the colors of the adductor muscle scars and the corresponding outer surface of the shells, suggesting that their pigmentation processes were independent. Interestingly, a relationship between the color of the adductor muscle scars and the dried soft-body weight of Pacific oysters was found, which could be explained by the high hydroxyl free radical scavenging capacity of the muscle attached to the black adductor muscle scar. After the transcriptomes of pigmented and unpigmented adductor muscles and mantles were studied by RNAseq and compared, it was found that the retinol metabolism pathway were likely to be involved in melanin deposition on the adductor muscle scar and the outer surface of the shell, and that the different members of the tyrosinase or Cytochrome P450 gene families could play a role in the independent pigmentation of different organs.

Crassostrea gigas mortality in France: the usual suspect, a herpes virus, may not be the killer in this polymicrobial opportunistic disease

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Bruno ePetton

2015-07-01

Full Text Available Successive disease outbreaks in oyster (Crassostrea gigas beds in France have resulted in dramatic losses in production, and subsequent decline in the oyster-farming industry. Deaths of juvenile oysters have been associated with the presence of a herpes virus (OsHV-1 µvar and bacterial populations of the genus Vibrio. Although the pathogenicity of OsHV-1 µvar, as well as several strains of Vibrio has been demonstrated by experimental infections, our understanding of the complexity of infections occurring in the natural environment remains limited. In the present study, we use specific-pathogen-free (SPF oysters infected in an estuarine environment to study the diversity and dynamics of cultured microbial populations during disease expression. We observe that rapid Vibrio colonization followed by viral replication precedes oyster death. No correlation was found between the vibrio concentration and viral load in co-infected animals. We show that the quantity of viral DNA is a predictor of mortality, however, in the absence of bacteria, a high load of herpes virus is not sufficient to induce the full expression of the disease. In addition, we demonstrate that juvenile mortalities can occur in the absence of herpes virus, indicating that the herpes virus appears neither essential nor sufficient to cause juvenile deaths; whereas bacteria are necessary for the disease. Finally, we demonstrate that oysters are a reservoir of putative pathogens, and that the geographic origin, age, and cultivation method of oysters influence disease expression.

Crassostrea gigas mortality in France: the usual suspect, a herpes virus, may not be the killer in this polymicrobial opportunistic disease.

Science.gov (United States)

Petton, Bruno; Bruto, Maxime; James, Adèle; Labreuche, Yannick; Alunno-Bruscia, Marianne; Le Roux, Frédérique

2015-01-01

Successive disease outbreaks in oyster (Crassostrea gigas) beds in France have resulted in dramatic losses in production, and subsequent decline in the oyster-farming industry. Deaths of juvenile oysters have been associated with the presence of a herpes virus (OsHV-1 μvar) and bacterial populations of the genus Vibrio. Although the pathogenicity of OsHV-1 μvar, as well as several strains of Vibrio has been demonstrated by experimental infections, our understanding of the complexity of infections occurring in the natural environment remains limited. In the present study, we use specific-pathogen-free (SPF) oysters infected in an estuarine environment to study the diversity and dynamics of cultured microbial populations during disease expression. We observe that rapid Vibrio colonization followed by viral replication precedes oyster death. No correlation was found between the vibrio concentration and viral load in co-infected animals. We show that the quantity of viral DNA is a predictor of mortality, however, in the absence of bacteria, a high load of herpes virus is not sufficient to induce the full expression of the disease. In addition, we demonstrate that juvenile mortalities can occur in the absence of herpes virus, indicating that the herpes virus appears neither essential nor sufficient to cause juvenile deaths; whereas bacteria are necessary for the disease. Finally, we demonstrate that oysters are a reservoir of putative pathogens, and that the geographic origin, age, and cultivation method of oysters influence disease expression.

Parental exposure to the herbicide diuron results in oxidative DNA damage to germinal cells of the Pacific oyster Crassostrea gigas.

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Barranger, Audrey; Heude-Berthelin, Clothilde; Rouxel, Julien; Adeline, Béatrice; Benabdelmouna, Abdellah; Burgeot, Thierry; Akcha, Farida

2016-02-01

Chemical pollution by pesticides has been identified as a possible contributing factor to the massive mortality outbreaks observed in Crassostrea gigas for several years. A previous study demonstrated the vertical transmission of DNA damage by subjecting oyster genitors to the herbicide diuron at environmental concentrations during gametogenesis. This trans-generational effect occurs through damage to genitor-exposed gametes, as measured by the comet-assay. The presence of DNA damage in gametes could be linked to the formation of DNA damage in other germ cells. In order to explore this question, the levels and cell distribution of the oxidized base lesion 8-oxodGuo were studied in the gonads of exposed genitors. High-performance liquid chromatography coupled with UV and electrochemical detection analysis showed an increase in 8-oxodGuo levels in both male and female gonads after exposure to diuron. Immunohistochemistry analysis showed the presence of 8-oxodGuo at all stages of male germ cells, from early to mature stages. Conversely, the oxidized base was only present in early germ cell stages in female gonads. These results indicate that male and female genitors underwent oxidative stress following exposure to diuron, resulting in DNA oxidation in both early germ cells and gametes, such as spermatozoa, which could explain the transmission of diuron-induced DNA damage to offspring. Furthermore, immunostaining of early germ cells seems indicates that damages caused by exposure to diuron on germ line not only affect the current sexual cycle but also could affect future gametogenesis. Copyright © 2015 Elsevier Inc. All rights reserved.

Transcriptional changes in Crassostrea gigas oyster spat following a parental exposure to the herbicide diuron

International Nuclear Information System (INIS)

Rondon, R.; Akcha, F.; Alonso, P.; Menard, D.; Rouxel, J.; Montagnani, C.; Mitta, G.; Cosseau, C.; Grunau, C.

2016-01-01

Highlights: • Remodeling of the transcriptome of the offspring of oysters exposed to diuron (838 gene which expression is modulated). • Functions related to cytoskeleton organization, translation, ATP synthesis were activated. • Functions linked to transcription and protein degradation were altered. • Up-regulation of genes involved in energy production, protein synthesis and mitosis. • Catch-up growth phenomenon could allow the spats to compensate for slower growth. - Abstract: The Pacific oyster Crassostrea gigas is the main oyster species produced in the world, and a key coastal economic resource in France. High mortalities affect Pacific oysters since 2008 in France and Europe. Their origins have been attributed to a combination of biotic and abiotic factors, underlining the importance of environment quality. The impact of water pollution has been pointed out and one of the pollutants, the genotoxic herbicide diuron, occurs at high concentrations all along the French coasts. Previous work has revealed that a parental exposure to diuron had a strong impact on hatching rates and offspring development even if spats were not exposed to diuron themselves. In this study, we explored for the first time the transcriptional changes occurring in oyster spats (non exposed) originating from genitors exposed to an environmentally relevant concentration of diuron during gametogenesis using the RNAseq methodology. We identified a transcriptomic remodeling revealing an effect of the herbicide. Different molecular pathways involved in energy production, translation and cell proliferation are particularly disturbed. This analysis revealed modulated candidate genes putatively involved in response to oxidative stress and mitochondrial damage in offspring of genitors exposed to diuron. Complementary measures of the activity of enzymes involved in these latter processes corroborate the results obtained at the transcriptomic level. In addition, our results suggested an

Transcriptional changes in Crassostrea gigas oyster spat following a parental exposure to the herbicide diuron

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Rondon, R. [Ifremer, IHPE UMR 5244, Univ. Perpignan Via Domitia, CNRS, Univ. Montpellier, F-34095 Montpellier (France); Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, F-66860 Perpignan (France); Akcha, F. [Ifremer, Department of Biogeochemistry and Ecotoxicology, Laboratory of Ecotoxicology, Rue de l’ile d’Yeu, BP 21105, 44311 Nantes Cedex 03 (France); Alonso, P. [CNRS, IHPE UMR 5244, Univ. Perpignan Via Domitia, IFREMER, Univ. Montpellier, F-34095 Montpellier (France); Menard, D.; Rouxel, J. [Ifremer, Department of Biogeochemistry and Ecotoxicology, Laboratory of Ecotoxicology, Rue de l’ile d’Yeu, BP 21105, 44311 Nantes Cedex 03 (France); Montagnani, C., E-mail: cmontagn@ifremer.fr [Ifremer, IHPE UMR 5244, Univ. Perpignan Via Domitia, CNRS, Univ. Montpellier, F-34095 Montpellier (France); Mitta, G.; Cosseau, C.; Grunau, C. [Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, F-66860 Perpignan (France)

2016-06-15

Highlights: • Remodeling of the transcriptome of the offspring of oysters exposed to diuron (838 gene which expression is modulated). • Functions related to cytoskeleton organization, translation, ATP synthesis were activated. • Functions linked to transcription and protein degradation were altered. • Up-regulation of genes involved in energy production, protein synthesis and mitosis. • Catch-up growth phenomenon could allow the spats to compensate for slower growth. - Abstract: The Pacific oyster Crassostrea gigas is the main oyster species produced in the world, and a key coastal economic resource in France. High mortalities affect Pacific oysters since 2008 in France and Europe. Their origins have been attributed to a combination of biotic and abiotic factors, underlining the importance of environment quality. The impact of water pollution has been pointed out and one of the pollutants, the genotoxic herbicide diuron, occurs at high concentrations all along the French coasts. Previous work has revealed that a parental exposure to diuron had a strong impact on hatching rates and offspring development even if spats were not exposed to diuron themselves. In this study, we explored for the first time the transcriptional changes occurring in oyster spats (non exposed) originating from genitors exposed to an environmentally relevant concentration of diuron during gametogenesis using the RNAseq methodology. We identified a transcriptomic remodeling revealing an effect of the herbicide. Different molecular pathways involved in energy production, translation and cell proliferation are particularly disturbed. This analysis revealed modulated candidate genes putatively involved in response to oxidative stress and mitochondrial damage in offspring of genitors exposed to diuron. Complementary measures of the activity of enzymes involved in these latter processes corroborate the results obtained at the transcriptomic level. In addition, our results suggested an

Ostreid herpesvirus OsHV-1 μVar in Pacific oysters Crassostrea gigas (Thunberg 1793) of the Wadden Sea, a UNESCO world heritage site.

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Gittenberger, A; Voorbergen-Laarman, M A; Engelsma, M Y

2016-01-01

The Wadden Sea is an extensive wetland area, recognized as UNESCO world heritage site of international importance. Since the mid-1990s, the invasive Pacific oyster Crassostrea gigas (Thunberg 1793) population in the area has grown exponentially, having a distinct impact on the ecosystem. The recent spread of the emerging oyster pathogen Ostreid herpesvirus OsHV-1 μVar worldwide and specifically in the oyster culture areas in the south of the Netherlands raised the question whether the virus may also be present in the Wadden Sea. In the summer of 2012 juvenile Pacific oysters were collected from five locations in the Dutch Wadden Sea. The virus was shown to be present in three of the five locations by real-time PCR and sequencing. It was concluded that OsHV-1 μVar has settled itself in Pacific oyster reefs in the Wadden Sea. These results and the recent discoveries of OsHV-1 microvariants in Australia and Korea indicate that OsHV-1 μVar and related variants might be more widespread than can be deduced from current literature. In particular in regions with no commercial oyster culture, similar to the Wadden Sea, the virus may go undetected as wild beds with mixed age classes hamper the detection of mortality among juvenile oysters. © 2015 John Wiley & Sons Ltd.

Copper induces expression and methylation changes of early development genes in Crassostrea gigas embryos.

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Sussarellu, Rossana; Lebreton, Morgane; Rouxel, Julien; Akcha, Farida; Rivière, Guillaume

2018-03-01

Copper contamination is widespread along coastal areas and exerts adverse effects on marine organisms such as mollusks. In the Pacific oyster, copper induces severe developmental abnormalities during early life stages; however, the underlying molecular mechanisms are largely unknown. This study aims to better understand whether the embryotoxic effects of copper in Crassostrea gigas could be mediated by alterations in gene expression, and the putative role of DNA methylation, which is known to contribute to gene regulation in early embryo development. For that purpose, oyster embryos were exposed to 4 nominal copper concentrations (0.1, 1, 10 and 20 μg L -1 Cu 2+ ) during early development assays. Embryotoxicity was monitored through the oyster embryo-larval bioassay at the D-larva stage 24 h post fertilization (hpf) and genotoxicity at gastrulation 7 hpf. In parallel, the relative expression of 15 genes encoding putative homeotic, biomineralization and DNA methylation proteins was measured at three developmental stages (3 hpf morula stage, 7 hpf gastrula stage, 24 hpf D-larvae stage) using RT-qPCR. Global DNA content in methylcytosine and hydroxymethylcytosine were measured by HPLC and gene-specific DNA methylation levels were monitored using MeDIP-qPCR. A significant increase in larval abnormalities was observed from copper concentrations of 10 μg L -1 , while significant genotoxic effects were detected at 1 μg L -1 and above. All the selected genes presented a stage-dependent expression pattern, which was impaired for some homeobox and DNA methylation genes (Notochord, HOXA1, HOX2, Lox5, DNMT3b and CXXC-1) after copper exposure. While global DNA methylation (5-methylcytosine) at gastrula stage didn't show significant changes between experimental conditions, 5-hydroxymethylcytosine, its degradation product, decreased upon copper treatment. The DNA methylation of exons and the transcript levels were correlated in control samples for HOXA1 but such

In situ localization and tissue distribution of ostreid herpesvirus 1 proteins in infected Pacific oyster, Crassostrea gigas.

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Martenot, Claire; Segarra, Amélie; Baillon, Laury; Faury, Nicole; Houssin, Maryline; Renault, Tristan

2016-05-01

Immunohistochemistry (IHC) assays were conducted on paraffin sections from experimentally infected spat and unchallenged spat produced in hatchery to determine the tissue distribution of three viral proteins within the Pacific oyster, Crassostrea gigas. Polyclonal antibodies were produced from recombinant proteins corresponding to two putative membrane proteins and one putative apoptosis inhibitor encoded by ORF 25, 72, and 87, respectively. Results were then compared to those obtained by in situ hybridization performed on the same individuals, and showed a substantial agreement according to Landis and Koch numeric scale. Positive signals were mainly observed in connective tissue of gills, mantle, adductor muscle, heart, digestive gland, labial palps, and gonads of infected spat. Positive signals were also reported in digestive epithelia. However, few positive signals were also observed in healthy appearing oysters (unchallenged spat) and could be due to virus persistence after a primary infection. Cellular localization of staining seemed to be linked to the function of the viral protein targeted. A nucleus staining was preferentially observed with antibodies targeting the putative apoptosis inhibitor protein whereas a cytoplasmic localization was obtained using antibodies recognizing putative membrane proteins. The detection of viral proteins was often associated with histopathological changes previously reported during OsHV-1 infection by histology and transmission electron microscopy. Within the 6h after viral suspension injection, positive signals were almost at the maximal level with the three antibodies and all studied organs appeared infected at 28h post viral injection. Connective tissue appeared to be a privileged site for OsHV-1 replication even if positive signals were observed in the epithelium cells of different organs which may be interpreted as a hypothetical portal of entry or release for the virus. IHC constitutes a suited method for analyzing the

Queen conch (Strombus gigas testis regresses during the reproductive season at nearshore sites in the Florida Keys.

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Daniel J Spade

Full Text Available BACKGROUND: Queen conch (Strombus gigas reproduction is inhibited in nearshore areas of the Florida Keys, relative to the offshore environment where conchs reproduce successfully. Nearshore reproductive failure is possibly a result of exposure to environmental factors, including heavy metals, which are likely to accumulate close to shore. Metals such as Cu and Zn are detrimental to reproduction in many mollusks. METHODOLOGY/PRINCIPAL FINDINGS: Histology shows gonadal atrophy in nearshore conchs as compared to reproductively healthy offshore conchs. In order to determine molecular mechanisms leading to tissue changes and reproductive failure, a microarray was developed. A normalized cDNA library for queen conch was constructed and sequenced using the 454 Life Sciences GS-FLX pyrosequencer, producing 27,723 assembled contigs and 7,740 annotated transcript sequences. The resulting sequences were used to design the microarray. Microarray analysis of conch testis indicated differential regulation of 255 genes (p<0.01 in nearshore conch, relative to offshore. Changes in expression for three of four transcripts of interest were confirmed using real-time reverse transcription polymerase chain reaction. Gene Ontology enrichment analysis indicated changes in biological processes: respiratory chain (GO:0015992, spermatogenesis (GO:0007283, small GTPase-mediated signal transduction (GO:0007264, and others. Inductively coupled plasma-mass spectrometry analysis indicated that Zn and possibly Cu were elevated in some nearshore conch tissues. CONCLUSIONS/SIGNIFICANCE: Congruence between testis histology and microarray data suggests that nearshore conch testes regress during the reproductive season, while offshore conch testes develop normally. Possible mechanisms underlying the testis regression observed in queen conch in the nearshore Florida Keys include a disruption of small GTPase (Ras-mediated signaling in testis development. Additionally, elevated tissue

Behavioral response of giant gartersnakes (Thamnophis gigas) to the relative availability of aquatic habitat on the landscape

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Reyes, Gabriel A.; Halstead, Brian J.; Rose, Jonathan P.; Ersan, Julia S. M.; Jordan, Anna C.; Essert, Allison M.; Fouts, Kristen J.; Fulton, Alexandria M.; Gustafson, K. Benjamin; Wack, Raymond F.; Wylie, Glenn D.; Casazza, Michael L.

2017-11-16

Most extant giant gartersnake (Thamnophis gigas) populations persist in an agro-ecosystem dominated by rice, which serves as a surrogate to the expansive marshes lost to flood control projects and development of the Great Central Valley of California. Knowledge of how giant gartersnakes use the rice agricultural landscape, including how they respond to fallowing, idling, or crop rotations, would greatly benefit conservation of giant gartersnakes by informing more snake-friendly land and water management practices. We studied adult giant gartersnakes at 11 sites in the rice-growing regions of the Sacramento Valley during an extended drought in California to evaluate their response to differences in water availability at the site and individual levels. Although our study indicated that giant gartersnakes make little use of rice fields themselves, and avoid cultivated rice relative to its availability on the landscape, rice is a crucial component of the modern landscape for giant gartersnakes. Giant gartersnakes are strongly associated with the canals that supply water to and drain water from rice fields; these canals provide much more stable habitat than rice fields because they maintain water longer and support marsh-like conditions for most of the giant gartersnake active season. Nonetheless, our results suggest that maintaining canals without neighboring rice fields would be detrimental to giant gartersnake populations, with decreases in giant gartersnake survival rates associated with less rice production in the surrounding landscape. Increased productivity of prey populations, dispersion of potential predators across a larger landscape, and a more secure water supply are just some of the mechanisms by which rice fields might benefit giant gartersnakes in adjacent canals. Results indicate that identifying how rice benefits giant gartersnakes in canals and the extent to which the rice agro-ecosystem could provide these benefits when rice is fallowed would inform

Seasonal and geographical variability in some trace elements of Pacific oysters (Crassostrea Gigas) cultured in two different bays of Northern Chile

International Nuclear Information System (INIS)

Gras, N.; Thieck, M.; Munoz, L.

1991-01-01

Chile has approximately 4,500 kilometers of continental coastline on the Pacific Ocean. It is therefore in a favorable position to develop fishing activities, since its waters contain a great variety of marine resources, namely, fish, shellfish and seaweeds. Fishing in Chile plays an important role in production. Metal contamination of the marine ecosystem is a pervasive and worldwide problem. Consequently, seafood consuming and exporting countries have gradually increased the need to improve the quality of their products in order to meet the required standards. In turn, this implies the need to adopt more efficient methods to analyze these resources by carrying out studies that will provide greater integral knowledge on the levels of essential and toxic trace elements found in seafood. In the present study, seasonal and geographical variability of some trace elements content of Pacific Oysters (Crassostrea Gigas) cultured, greatly demanded on the international market, are investigated. Samples for the analysis were collected from two different bays of Northern Chile, where heavy-metal pollution is already recognized as a problem. The trace elements content of this mollusk was studied at monthly intervals for 12 months (September 1987-August 1988). The determination of Cu was carried out using radiochemical neutron activation analysis and the other trace elements like Cd, As, Br, Na, Se, Cr, Fe, Zn and Co, were determined through neutron activation analysis in its purely instrumental form. NBS Standard Reference Materials were used to determine the accuracy of both methods. Significant differences were found comparing the content of copper and cadmium at the different seasons and locations of capture

Concentrations of 108mAg, 137Cs, and 210Pb in oyster (Crassostrea gigas) on the Japanese coast in relation to the distribution and behavior of radionuclides in sea water

International Nuclear Information System (INIS)

Ishikawa, Y.; Kikuchi, T.; Sekine, T.; Yoshihara, K.

1995-01-01

Concentrations of 108m Ag, 137 Cs, and 210 Pb in oysters (Crassostrea gigas) were measured for about 10 years on the northeast coast of Japan. Silver-108m was detected in oyster samples collected from an open bay, and its concentrations decreased from the initial value of about 30 mBq/kg fresh in the early 1980s to the value of about 10 mBq/kg fresh in the early 1990s. This decrease could be mainly explained by effects of the ocean current in the early 1980s, and the coastal sea water thereafter, as well as by the advection and diffusion in the ocean. In the nearly-closed bays, concentrations of 108m Ag and 210 Pb in oysters were remarkably lower than in the open bays. It suggests that scavenging of silver and lead from the sea water effectively occurred in the nearly-closed bays. In contrast, concentrations of 137 Cs in oysters were similar in the open bays and in the nearly-closed bays. (author). 17 refs., 5 figs., 3 tabs

Ocean acidification stimulates alkali signal pathway: A bicarbonate sensing soluble adenylyl cyclase from oyster Crassostrea gigas mediates physiological changes induced by CO2 exposure.

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Wang, Xiudan; Wang, Mengqiang; Jia, Zhihao; Wang, Hao; Jiang, Shuai; Chen, Hao; Wang, Lingling; Song, Linsheng

2016-12-01

Ocean acidification (OA) has been demonstrated to have severe effects on marine organisms, especially marine calcifiers. However, the impacts of OA on the physiology of marine calcifiers and the underlying mechanisms remain unclear. Soluble adenylyl cyclase (sAC) is an acid-base sensor in response to [HCO 3 - ] and an intracellular source of cyclic AMP (cAMP). In the present study, an ortholog of sAC was identified from pacific oyster Crassostrea gigas (designated as CgsAC) and the catalytic region of CgsAC was cloned and expressed. Similar to the native CgsAC from gill tissues, the recombinant CgsAC protein (rCgsAC) exhibited [HCO 3 - ] mediated cAMP-forming activity, which could be inhibited by a small molecule KH7. After 16days of CO 2 exposure (pH=7.50), the mRNA transcripts of CgsAC increased in muscle, mantle, hepatopancreas, gill, male gonad and haemocytes, and two truncated CgsAC forms of 45kD and 20kD were produced. Cytosolic CgsAC could be translocated from the cytoplasm and nuclei to the membrane in response to CO 2 exposure. Besides, CO 2 exposure could increase the production of cAMP and intracellular pH of haemocytes, which was regulated by CgsAC (pocean acidification on marine calcifiers. Copyright © 2016 Elsevier B.V. All rights reserved.

Uranium uptake history, open-system behaviour and uranium-series ages of fossil Tridacna gigas from Huon Peninsula, Papua New Guinea

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Ayling, Bridget F.; Eggins, Stephen; McCulloch, Malcolm T.; Chappell, John; Grün, Rainer; Mortimer, Graham

2017-09-01

Molluscs incorporate negligible uranium into their skeleton while they are living, with any uranium uptake occurring post-mortem. As such, closed-system U-series dating of molluscs is unlikely to provide reliable age constraints for marine deposits. Even the application of open-system U-series modelling is challenging, because uranium uptake and loss histories can affect time-integrated uranium distributions and are difficult to constrain. We investigate the chemical and isotopic distribution of uranium in fossil Tridacna gigas (giant clams) from Marine Isotope Stage (MIS) 5e (128-116 ka) and MIS 11 (424-374 ka) reefs at Huon Peninsula in Papua New Guinea. The large size of the clams enables detailed chemical and isotopic mapping of uranium using LA-ICPMS and LA-MC-ICPMS techniques. Within each fossil Tridacna specimen, marked differences in uranium concentrations are observed across the three Tridacna growth zones (outer, inner, hinge), with the outer and hinge zones being relatively enriched. In MIS 5e and MIS 11 Tridacna, the outer and hinge zones contain approximately 1 ppm and 5 ppm uranium respectively. In addition to uptake of uranium, loss of uranium appears prevalent, especially in the MIS 11 specimens. The effect of uranium loss is to elevate measured [230Th/238U] values with little effect on [234U/238U] values. Closed-system age estimates are on average 50% too young for the MIS 5e Tridacna, and 25% too young for the MIS 11 Tridacna. A complex, multi-stage uptake and loss history is interpreted for the fossil Tridacna and we demonstrate that they cannot provide independent, reliable geochronological controls on the timing of past reef growth at Huon Peninsula.

Densidad, estructura de tallas y actividad reproductiva del caracol rosado Eustrombus gigas (Mesogastropoda: Strombidae en Banco Chinchorro, México

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Yuself R Cala

2013-12-01

Full Text Available Eustrombus gigas es uno de los recursos pesqueros costeros más valiosos en la región del Caribe y constituye un molusco con un elevado valor estético y ecológico. En esta investigación se evalúa su densidad total, densidad de adultos, la estructura de tallas y frecuencia de evidencias reproductivas en Banco Chinchorro, México, periodo 2009-2010; durante tres períodos (de lluvias, seca y de frentes fríos en tres zonas: Norte, Centro y Sur. La densidad total para el área de estudio varió de 127ind./ha en lluvias a 384ind./ha en seca, la menor densidad se presentó en la zona Norte del Banco (198ind./ha y la mayor en la zona Sur (385ind./ha. La densidad de caracoles adultos fue baja (6.11ind./ha en seca y 8.33ind./ha en lluvias y 5.55, 7.05 y 8.33ind./ha para las zonas Centro, Sur y Norte, respectivamente. Las densidades de adultos estuvieron por debajo del umbral mínimo necesario para mantener la reproducción. El 42% de la población es vulnerable a la pesca (Lsi≥200mm; sin embargo, solo 2.2% de la población alcanza un Gl>15mm. Solo se observaron seis evidencias de reproducción durante el período de estudio, lo que señala la presencia del efecto Allee en la población y la urgente necesidad del cierre de su pesquería. Se proponen tres puntos importantes para el manejo de la especie: cierre de la pesca, monitoreo de la población y la implementación refugios pesqueros

Changes in the composition and diversity of the bacterial microbiota associated with oysters (Crassostrea corteziensis, Crassostrea gigas and Crassostrea sikamea) during commercial production.

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Trabal Fernández, Natalia; Mazón-Suástegui, José M; Vázquez-Juárez, Ricardo; Ascencio-Valle, Felipe; Romero, Jaime

2014-04-01

The resident microbiota of three oyster species (Crassostrea corteziensis, Crassostrea gigas and Crassostrea sikamea) was characterised using a high-throughput sequencing approach (pyrosequencing) that was based on the V3-V5 regions of the 16S rRNA gene. We analysed the changes in the bacterial community beginning with the postlarvae produced in a hatchery, which were later planted at two grow-out cultivation sites until they reached the adult stage. DNA samples from the oysters were amplified, and 31 008 sequences belonging to 13 phyla (including Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes) and 243 genera were generated. Considering all life stages, Proteobacteria was the most abundant phylum, but it showed variations at the genus level between the postlarvae and the adult oysters. Bacteroidetes was the second most common phylum, but it was found in higher abundance in the postlarvae than in adults. The relative abundance showed that the microbiota that was associated with the postlarvae and adults differed substantially, and higher diversity and richness were evident in the postlarvae in comparison with adults of the same species. The site of rearing influenced the bacterial community composition of C. corteziensis and C. sikamea adults. The bacterial groups that were found in these oysters were complex and metabolically versatile, making it difficult to understand the host-bacteria symbiotic relationships; therefore, the physiological and ecological significances of the resident microbiota remain uncertain. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Effects of chronic exposure to ionising radiation in the Pacific oyster Crassostrea gigas

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Fievet, B.; Devos, A.; Voiseux, C.; Leconte-Pradines, C. [Institut de Radioprotection et de Surete' Nucleaire (France); Dallas, L.; Jha, A. [University of Plymouth (United Kingdom)

2014-07-01

The Cotentin peninsula (Normandy, France) hosts nuclear industry facilities which operate with controlled discharges of radionuclides in the marine environment. Compared to natural radioactivity, the increase by artificial radionuclides is small but constant. As a consequence, marine species are chronically exposed to low additional doses of ionizing radiation (IR). The effects of chronic exposure to radionuclides were investigated in early stages of development of the Japanese oyster Crassostrea gigas. On the basis of literature, mollusks are expected to be particularly resistant to acute IR (UNSCEAR, 1996. Sources and effects of ionizing radiation. Report to the General Assembly, with Scientific Annex. 86 p). Two different chronic exposure conditions consisted in external ({sup 137}Cs) and internal ({sup 241}Am) irradiation for two weeks. Biological endpoints were analyzed in parallel at both the integrated (growth) and molecular (target stress gene expression) levels. To identify potential biological targets of IR, oysters were first exposed to very high dose rates and radionuclide activities with the perspective to reduce the levels and to derive dose-response curves. Although the initial exposure levels ({sup 137}Cs 30 000 μGy.h{sup -1}; {sup 241}Am 57 000 Bq.L{sup -1}) were many orders of magnitude higher than those encountered in the natural environment, no significant change in the measured parameters was observed. This result was surprising because data from the literature showed that exposure of mussel Mytilus edulis to {sup 3}H at lower doses rates (10-100 μGy.h{sup -1}) induced DNA damage in hemocytes (Jha et al., 2005. Impact of low doses of tritium on the marine mussel, Mytilus edulis: Genotoxic effects and tissue-specific bioconcentration. Mutation Research/Genetic Toxicology and Environmental Mutagenesis 586, 47-57). To understand this apparent discrepancy between those two filtering bivalves, a new experiment was performed to compare the response

Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas: a bioinformatic and peptidomic survey.

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Stewart, Michael J; Favrel, Pascal; Rotgans, Bronwyn A; Wang, Tianfang; Zhao, Min; Sohail, Manzar; O'Connor, Wayne A; Elizur, Abigail; Henry, Joel; Cummins, Scott F

2014-10-02

Oysters impart significant socio-ecological benefits from primary production of food supply, to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass. Little though is known at the molecular level of what genes are responsible for how oysters reproduce, filter nutrients, survive stressful physiological events and form reef communities. Neuropeptides represent a diverse class of chemical messengers, instrumental in orchestrating these complex physiological events in other species. By a combination of in silico data mining and peptide analysis of ganglia, 74 putative neuropeptide genes were identified from genome and transcriptome databases of the Akoya pearl oyster, Pinctata fucata and the Pacific oyster, Crassostrea gigas, encoding precursors for over 300 predicted bioactive peptide products, including three newly identified neuropeptide precursors PFGx8amide, RxIamide and Wx3Yamide. Our findings also include a gene for the gonadotropin-releasing hormone (GnRH) and two egg-laying hormones (ELH) which were identified from both oysters. Multiple sequence alignments and phylogenetic analysis supports similar global organization of these mature peptides. Computer-based peptide modeling of the molecular tertiary structures of ELH highlights the structural homologies within ELH family, which may facilitate ELH activity leading to the release of gametes. Our analysis demonstrates that oysters possess conserved molluscan neuropeptide domains and overall precursor organization whilst highlighting many previously unrecognized bivalve idiosyncrasies. This genomic analysis provides a solid foundation from which further studies aimed at the functional characterization of these molluscan neuropeptides can be conducted to further stimulate advances in understanding the ecology and cultivation of oysters.

Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms.

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De Wit, Pierre; Durland, Evan; Ventura, Alexander; Langdon, Chris J

2018-02-22

Despite recent work to characterize gene expression changes associated with larval development in oysters, the mechanism by which the larval shell is first formed is still largely unknown. In Crassostrea gigas, this shell forms within the first 24 h post fertilization, and it has been demonstrated that changes in water chemistry can cause delays in shell formation, shell deformations and higher mortality rates. In this study, we use the delay in shell formation associated with exposure to CO 2 -acidified seawater to identify genes correlated with initial shell deposition. By fitting linear models to gene expression data in ambient and low aragonite saturation treatments, we are able to isolate 37 annotated genes correlated with initial larval shell formation, which can be categorized into 1) ion transporters, 2) shell matrix proteins and 3) protease inhibitors. Clustering of the gene expression data into co-expression networks further supports the result of the linear models, and also implies an important role of dynein motor proteins as transporters of cellular components during the initial shell formation process. Using an RNA-Seq approach with high temporal resolution allows us to identify a conceptual model for how oyster larval calcification is initiated. This work provides a foundation for further studies on how genetic variation in these identified genes could affect fitness of oyster populations subjected to future environmental changes, such as ocean acidification.

Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas.

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Li, Busu; Song, Kai; Meng, Jie; Li, Li; Zhang, Guofan

2017-09-11

The Pacific oyster Crassostrea gigas is an important marine fishery resource, which contains high levels of glycogen that contributes to the flavor and the quality of the oyster. However, little is known about the molecular and chemical mechanisms underlying glycogen content differences in Pacific oysters. Using a homogeneous cultured Pacific oyster family, we explored these regulatory networks at the level of the metabolome and the transcriptome. Oysters with the highest and lowest natural glycogen content were selected for differential transcriptome and metabolome analysis. We identified 1888 differentially-expressed genes, seventy-five differentially-abundant metabolites, which are part of twenty-seven signaling pathways that were enriched using an integrated analysis of the interaction between the differentially-expressed genes and the differentially-abundant metabolites. Based on these results, we found that a high expression of carnitine O-palmitoyltransferase 2 (CPT2), indicative of increased fatty acid degradation, is associated with a lower glycogen content. Together, a high level of expression of phosphoenolpyruvate carboxykinase (PEPCK), and high levels of glucogenic amino acids likely underlie the increased glycogen production in high-glycogen oysters. In addition, the higher levels of the glycolytic enzymes hexokinase (HK) and pyruvate kinase (PK), as well as of the TCA cycle enzymes malate dehydrogenase (MDH) and pyruvate carboxylase (PYC), imply that there is a concomitant up-regulation of energy metabolism in high-glycogen oysters. High-glycogen oysters also appeared to have an increased ability to cope with stress, since the levels of the antioxidant glutathione peroxidase enzyme 5 (GPX5) gene were also increased. Our results suggest that amino acids and free fatty acids are closely related to glycogen content in oysters. In addition, oysters with a high glycogen content have a greater energy production capacity and a greater ability to cope with

Human norovirus RNA persists in seawater under simulated winter conditions but does not bioaccumulate efficiently in Pacific Oysters (Crassostrea gigas).

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Dancer, D; Rangdale, R E; Lowther, J A; Lees, D N

2010-11-01

Norovirus (NoV) is the principal agent of bivalve molluscan shellfish-associated gastroenteric illness worldwide. Currently, noncultivable human NoVs can be detected in bivalve molluscan shellfish by using molecular methods such as real-time reverse transcription PCR assays (qRT-PCR). In addition to infectious viruses, this methodology may also detect noninfectious NoV, including fragments of the NoV genome. This study addresses, in part, the implications of qRT-PCR results for the detection of NoV in shellfish in the absence of an infectivity assay. To evaluate environmental persistence, the stability of a short fragment of the NoV genome, spanning the qRT-PCR target in the open reading frame 1/2 junction, was assessed in seawater under artificial environmental conditions simulating winter in the United Kingdom (1 mW/cm² UV irradiation, 8°C) during a 4-week period. Detectable RNA levels decreased exponentially (T₉₀ of approximately 141 h); however, sequences were still detectable for up to 2 weeks. The ability of Pacific oysters (Crassostrea gigas) to bioaccumulate NoV particles (from human feces) and RNA fragments was also compared using qRT-PCR. Oysters exposed to NoV particles subsequently were positive for NoV by qRT-PCR at levels several orders of magnitude in excess of the theoretical limit of detection, whereas oysters exposed to similar quantities of NoV RNA were either negative or positive at significantly lower levels. Therefore, although noninfectious fragments of NoV RNA may persist in the environment under winter conditions, this type of material will not be efficiently bioaccumulated by Pacific oysters and should not significantly contribute to positive qRT-PCR results.

Bioinspired twisted composites based on Bouligand structures

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Pinto, F.; Iervolino, O.; Scarselli, G.; Ginzburg, D.; Meo, M.

2016-04-01

The coupling between structural support and protection makes biological systems an important source of inspiration for the development of advanced smart composite structures. In particular, some particular material configurations can be implemented into traditional composites in order to improve their impact resistance and the out-of-plane properties, which represents one of the major weakness of commercial carbon fibres reinforced polymers (CFRP) structures. Based on this premise, a three-dimensional twisted arrangement shown in a vast multitude of biological systems (such as the armoured cuticles of Scarabei, the scales of Arapaima Gigas and the smashing club of Odontodactylus Scyllarus) has been replicated to develop an improved structural material characterised by a high level of in-plane isotropy and a higher interfacial strength generated by the smooth stiffness transition between each layer of fibrils. Indeed, due to their intrinsic layered nature, interlaminar stresses are one of the major causes of failure of traditional CFRP and are generated by the mismatch of the elastic properties between plies in a traditional laminate. Since the energy required to open a crack or a delamination between two adjacent plies is due to the difference between their orientations, the gradual angle variation obtained by mimicking the Bouligand Structures could improve energy absorption and the residual properties of carbon laminates when they are subjected to low velocity impact event. Two different bioinspired laminates were manufactured following a double helicoidal approach and a rotational one and were subjected to a complete test campaign including low velocity impact loading and compared to a traditional quasi-isotropic panel. Fractography analysis via X-Ray tomography was used to understand the mechanical behaviour of the different laminates and the residual properties were evaluated via Compression After Impact (CAI) tests. Results confirmed that the biological

Simultaneous Determination of Decursin, Decursinol Angelate, Nodakenin, and Decursinol of Angelica gigas Nakai in Human Plasma by UHPLC-MS/MS: Application to Pharmacokinetic Study

Directory of Open Access Journals (Sweden)

Sook-Jin Kim

2018-04-01

Full Text Available Coumarins in Cham-dang-gwi, the dried root of Angelica gigas Nakai (AGN, possess pharmacological effects on anemia, pain, infection, and articular rheumatism. The AGN root containes decursin (D, decursinol angelate (DA, nodakenin, and decursinol (DOH, a major metabolite of D and DA. The aim of this study was to develop a simultaneous determination method for these four coumarins in human plasma using ultra high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS. Chromatographic separation was performed on dual columns (Kinetex® C18 column and Capcell core C18 column with mobile phase consisting of water and acetonitrile at a flow rate of 0.3 mL/min using gradient elution. Multiple reaction monitoring was operated in positive ion mode with precursors to product ion transition values of m/z 328.9→228.8, 328.9→228.9, 409.4→248.8, and 246.8→212.9 to measure D, DA, nodakenin, and DOH, respectively. Linear calibration curves were fitted over concentration range of 0.05–50 ng/mL for these four components, with correlation coefficient greater than 0.995. Inter- and intra-day accuracies were between 90.60% and 108.24%. These precisions were within 11.19% for all components. The established method was then applied to a pharmacokinetic study for the four coumarins after usual dosing in Korean subjects.

Analysis of the Pointing Accuracy of a 6U CubeSat Mission for Proximity Operations and Resident Space Object Imaging

Science.gov (United States)

2013-05-29

combining rangefinder measurements and knowledge of the nanosat inertial attitude and position [6]. The approach to the design of the ARAPAIMA...of the mission are developed in a bottom-up approach incorpo- rating simulation, design, integration and testing of components and subsystems, with...represents the geocentric inertial frame; blue represents the Earth-centered-Earth-fixed frame; the red represents the local-vertical local-horizontal

A Fully Integrated Global Strategic Supply Network - A Critical Enabler of DoD Transformation

Science.gov (United States)

2004-01-01

Enterprise Applications: Even New Archtectures May Not Bring Market Back to Life.” Giga Research, 26 September 2003. Kreisher, Otto. “The Key...Enterprise Applications: Even New Archtectures May Not Bring Market Back to Life. Giga Research, September 26, 2003, p.5. 9 Miller, Byron (2002

A new marine triclad ectoparasitic on Malaysian and Indonesian horseshoe crabs (Platyhelminthes, Turbellaria, Tricladida)

NARCIS (Netherlands)

Sluys, Ronald

1983-01-01

A new species of marine triclad, Ectoplana undata n. sp., ectoparasitic on the horseshoe crab Tachypleus gigas, is described. Cocoons of triclads were found on T. gigas as well as on the horseshoe crab Carcinoscorpius rotundicauda; since from the latter species no triclads were collected, it remains

A Carbonic Anhydrase Serves as an Important Acid-Base Regulator in Pacific Oyster Crassostrea gigas Exposed to Elevated CO2: Implication for Physiological Responses of Mollusk to Ocean Acidification.

Science.gov (United States)

Wang, Xiudan; Wang, Mengqiang; Jia, Zhihao; Qiu, Limei; Wang, Lingling; Zhang, Anguo; Song, Linsheng

2017-02-01

Carbonic anhydrases (CAs) have been demonstrated to play an important role in acid-base regulation in vertebrates. However, the classification and modulatory function of CAs in marine invertebrates, especially their responses to ocean acidification remain largely unknown. Here, a cytosolic α-CA (designated as CgCAII-1) was characterized from Pacific oyster Crassostrea gigas and its molecular activities against CO 2 exposure were investigated. CgCAII-1 possessed a conserved CA catalytic domain, with high similarity to invertebrate cytoplasmic or mitochondrial α-CAs. Recombinant CgCAII-1 could convert CO 2 to HCO 3 - with calculated activity as 0.54 × 10 3  U/mg, which could be inhibited by acetazolamide (AZ). The mRNA transcripts of CgCAII-1 in muscle, mantle, hepatopancreas, gill, and hemocytes increased significantly after exposure to elevated CO 2 . CgCAII-1 could interact with the hemocyte membrane proteins and the distribution of CgCAII-1 protein became more concentrated and dense in gill and mantle under CO 2 exposure. The intracellular pH (pHi) of hemocytes under CO 2 exposure increased significantly (p ocean acidification and participate in acid-base regulation. Such cytoplasmic CA-based physiological regulation mechanism might explain other physiological responses of marine organisms to OA.

Large-scale parallel genome assembler over cloud computing environment.

Science.gov (United States)

Das, Arghya Kusum; Koppa, Praveen Kumar; Goswami, Sayan; Platania, Richard; Park, Seung-Jong

2017-06-01

The size of high throughput DNA sequencing data has already reached the terabyte scale. To manage this huge volume of data, many downstream sequencing applications started using locality-based computing over different cloud infrastructures to take advantage of elastic (pay as you go) resources at a lower cost. However, the locality-based programming model (e.g. MapReduce) is relatively new. Consequently, developing scalable data-intensive bioinformatics applications using this model and understanding the hardware environment that these applications require for good performance, both require further research. In this paper, we present a de Bruijn graph oriented Parallel Giraph-based Genome Assembler (GiGA), as well as the hardware platform required for its optimal performance. GiGA uses the power of Hadoop (MapReduce) and Giraph (large-scale graph analysis) to achieve high scalability over hundreds of compute nodes by collocating the computation and data. GiGA achieves significantly higher scalability with competitive assembly quality compared to contemporary parallel assemblers (e.g. ABySS and Contrail) over traditional HPC cluster. Moreover, we show that the performance of GiGA is significantly improved by using an SSD-based private cloud infrastructure over traditional HPC cluster. We observe that the performance of GiGA on 256 cores of this SSD-based cloud infrastructure closely matches that of 512 cores of traditional HPC cluster.

[Density, size structure and reproductive activity of the pink conch Eustrombus gigas (Mesogastropoda: Strombidae) in Banco Chinchorro, Mexico].

Science.gov (United States)

Cala, Yuself R; Navarrete, Alberto de Jesús; Ocaña, Frank A; Rivera, José Oliva

2013-12-01

The pink conch Eustrombus gigas is an important fisheries resource. At the regional level in the Caribbean, over-exploitation and habitat destruction have caused a decrease in the abundance of this resource. In order to provide necessary information for the species management in Mexico, this work aimed to analyze the total density, adult density, size structure and reproductive behavior of pink conch population at Banco Chinchorro during 2009-2010. Data from three seasons were obtained (rainy, dry and cold fronts periods) in three areas: Norte (North), Centro (Center) and Sur (South). The organisms were separated into two groups: (a) the criteria based upon legal harvest in Mexico: legal size conchs (siphonal length > 200 mm) and illegal size conchs (siphonal length sexual maturity using the 15 mm lip thickness standard: lip or = 15 mm as adult conch. Copulation, spawning, egg masses and aggregations were evaluated as reproductive evidences. The highest total density was observed during the dry season with 384ind./ha, and the lowest during the rainy season with 127ind./ha. The highest density was reported at Sur (385ind./ha) and the lowest at Norte (198ind./ ha). The highest adult density was observed during the rainy season (8.33ind./ha), and the lowest occurred in the dry season (6.1 ind./ha). Adult density values were 5.55, 7.05 and 8.33ind./ha for Centro, Sur and Norte areas, respectively. Adult densities were lower than the threshold needed for reproduction, and 42% of the population may be vulnerable to fishing, as they had the minimum size for catch (Lsi 200 mm). Furthermore, only 2.2% of the population reached a Gl > 15 mm as sexual maturity indicator. During the study period, only six evidences of reproductive activity were observed. The smaller densities reported at Banco Chinchorro may cause reproduction events to be almost absent which in turn is sufficient evidence to show that the Allee Effect is acting on the queen conch population and there is an

SecureCPS: Defending a nanosatellite cyber-physical system

Science.gov (United States)

Forbes, Lance; Vu, Huy; Udrea, Bogdan; Hagar, Hamilton; Koutsoukos, Xenofon D.; Yampolskiy, Mark

2014-06-01

Recent inexpensive nanosatellite designs employ maneuvering thrusters, much as large satellites have done for decades. However, because a maneuvering nanosatellite can threaten HVAs on-­orbit, it must provide a level of security typically reserved for HVAs. Securing nanosatellites with maneuvering capability is challenging due to extreme cost, size, and power constraints. While still in the design process, our low-­cost SecureCPS architecture promises to dramatically improve security, to include preempting unknown binaries and detecting abnormal behavior. SecureCPS also applies to a broad class of cyber-­physical systems (CPS), such as aircraft, cars, and trains. This paper focuses on Embry-­Riddle's ARAPAIMA nanosatellite architecture, where we assume any off-­the-­shelf component could be compromised by a supply chain attack.1 Based on these assumptions, we have used Vanderbilt's Cyber Physical -­ Attack Description Language (CP-­ADL) to represent realistic attacks, analyze how these attacks propagate in the ARAPAIMA architecture, and how to defeat them using the combination of a low-­cost Root of Trust (RoT) Module, Global InfoTek's Advanced Malware Analysis System (GAMAS), and Anomaly Detection by Machine Learning (ADML).2 Our most recent efforts focus on refining and validating the design of SecureCPS.

Üle 21 aasta eraettevõtluses vastu pidanud / Väinu Rozental

Index Scriptorium Estoniae

Rozental, Väinu, 1957-

2008-01-01

Üle 21 aasta tagasi registreeritud teenindus-tootmiskooperatiividest, mis toimivad edukalt tänaseni. Vt. samas: Audio-Video firma väntab edasi; Giga omanik ja eestööline Tiit Veeber: mul ei ole kuskil mujal olla kui kraavis - see on mu elu; Helko asutaja tegutseb endiselt helide ja võimendamise maailmas; Ilves-Extra orienteerub rõivaste tootmise ja müügi maailmas hästi. Lisad: OÜ Audio-Video; AS Giga; FIE Mart Jallai Helko Helivõimendustehnika; AS Ilves-Extra. Küsimusele, mis on aidanud vastu pidada ja mis saab edasi, vastavad OÜ Audio-Video ainuomanik Jaan Kalmus, ASi Giga omanik Tiit Veeber, OÜ Helimees omanik Mart Jallai ning ASi Ilves-Extra põhiomanik Arvo Kivikas

Recovery of wild Pacific oyster, Crassostrea gigas in terms of reproduction and gametogenesis two-years after the Hebei Spirit Oil Spill Accident off the West Coast of Korea

Science.gov (United States)

Mondol, Mostafizur Rahman; Keshavmurthy, Shashank; Lee, Hee-Jung; Hong, Hyun-Ki; Park, Heung-Sik; Park, Sang-Rul; Kang, Chang-Keun; Choi, Kwang-Sik

2015-12-01

The Hebei Spirit oil spill in December 2007 at Taean off the west coast of Korea was the largest oil tanker accident in Korea. However, the impact of the spill on physiology of benthic animals remains largely unknown. Two-years after the accident, we compared reproductive effort and annual gametogenesis of the wild Pacific oyster Crassostrea gigas, residing at oil spill site with a control oyster population in Incheon Bay, North-West coast of Korea. Results showed that the oyster sampled from the oil spill site showed a significantly higher (279.0 mg standard animal-1, Pgametogenic pattern between the two populations, and most of the females of both populations spawned between August and September. During spawning season, egg mass of oysters determined using enzyme-linked immunosorbant assay (ELISA) in the oil spill area was significantly higher (136.3 mg standard animal-1, P<0.05) than the control population (120.5 mg standard animal-1, P<0.05). The tissue protein level in the oysters at the contaminated area was significantly higher (102.6 mg standard animal-1, P<0.05) than the level measured from the control oysters (81.4 mg standard animal-1, P<0.05). The observed better biological performances of oysters at the contaminated site suggested their recovery of the physiological status to normal level after two years of the oil spill accident.

Predictive models for the effect of storage temperature on Vibrio parahaemolyticus viability and counts of total viable bacteria in Pacific oysters (Crassostrea gigas).

Science.gov (United States)

Fernandez-Piquer, Judith; Bowman, John P; Ross, Tom; Tamplin, Mark L

2011-12-01

Vibrio parahaemolyticus is an indigenous bacterium of marine environments. It accumulates in oysters and may reach levels that cause human illness when postharvest temperatures are not properly controlled and oysters are consumed raw or undercooked. Predictive models were produced by injecting Pacific oysters (Crassostrea gigas) with a cocktail of V. parahaemolyticus strains, measuring viability rates at storage temperatures from 3.6 to 30.4°C, and fitting the data to a model to obtain parameter estimates. The models were evaluated with Pacific and Sydney Rock oysters (Saccostrea glomerata) containing natural populations of V. parahaemolyticus. V. parahaemolyticus viability was measured by direct plating samples on thiosulfate-citrate-bile salts-sucrose (TCBS) agar for injected oysters and by most probable number (MPN)-PCR for oysters containing natural populations. In parallel, total viable bacterial counts (TVC) were measured by direct plating on marine agar. Growth/inactivation rates for V. parahaemolyticus were -0.006, -0.004, -0.005, -0.003, 0.030, 0.075, 0.095, and 0.282 log₁₀ CFU/h at 3.6, 6.2, 9.6, 12.6, 18.4, 20.0, 25.7, and 30.4°C, respectively. The growth rates for TVC were 0.015, 0.023, 0.016, 0.048, 0.055, 0.071, 0.133, and 0.135 log₁₀ CFU/h at 3.6, 6.2, 9.3, 14.9, 18.4, 20.0, 25.7, and 30.4°C, respectively. Square root and Arrhenius-type secondary models were generated for V. parahaemolyticus growth and inactivation kinetic data, respectively. A square root model was produced for TVC growth. Evaluation studies showed that predictive growth for V. parahaemolyticus and TVC were "fail safe." The models can assist oyster companies and regulators in implementing management strategies to minimize V. parahaemolyticus risk and enhancing product quality in supply chains.

Response of an estuarine benthic community to application of the pesticide carbaryl and cultivation of Pacific oysters (Crassostrea gigas) in Willapa Bay, Washington.

Science.gov (United States)

Dumbauld, B R; Brooks, K M; Posey, M H

2001-10-01

Oyster culture operations on the West coast of North America have developed into complete farming operations for the introduced Japanese oyster, Crassostrea gigas, which now covers vast areas of the intertidal landscape, particularly in Washington State where the pesticide carbaryl has also been used to control burrowing thalassinid shrimp for more than 30 years. Field experiments were conducted to examine the effects of these habitat modifications on the benthic community in Willapa, Bay Washington (124 degrees 06'W,46 degrees 24'N) where 50% of the state's oyster production occurs. Results indicated that the primary long-term effect of carbaryl application was removal of the two species of thalassinid shrimp (Neotrypaea californiensis and Upogebia pugettensis), which dominated the community at the start of the experiment and clearly influenced community composition themselves. Small peracarid crustaceans like the amphipods Corophium acherusicum and Eohaustorius estuarius experienced the most significant short-term mortalities, but generally recruited back to treated sites within 3 months, and were often more abundant on treated than untreated sites 1 year after carbaryl application. Results for molluscs were mixed, with no significant effect on Macoma spp, but a significant effect on the commensal clam Crytomya californica and mixed results for the cockle Clinocardium nutalli. Polychaetes were the least susceptible to carbaryl and with the exception of a short-term effect on oligochaetes, no significant negative effects were observed. The addition of oysters did not affect the infaunal community in this study, however greater abundance of epifaunal organisms like mussels, scaleworms, and the amphipod Amphithoe valida, which builds tubes in algae attached to shells, was observed. Carbaryl, which is currently applied to roughly 242 ha (oyster culture operations like the addition of oysters themselves to a community often dominated by burrowing thalassinid shrimp

Big defensins, a diverse family of antimicrobial peptides that follows different patterns of expression in hemocytes of the oyster Crassostrea gigas.

Science.gov (United States)

Rosa, Rafael D; Santini, Adrien; Fievet, Julie; Bulet, Philippe; Destoumieux-Garzón, Delphine; Bachère, Evelyne

2011-01-01

Big defensin is an antimicrobial peptide composed of a highly hydrophobic N-terminal region and a cationic C-terminal region containing six cysteine residues involved in three internal disulfide bridges. While big defensin sequences have been reported in various mollusk species, few studies have been devoted to their sequence diversity, gene organization and their expression in response to microbial infections. Using the high-throughput Digital Gene Expression approach, we have identified in Crassostrea gigas oysters several sequences coding for big defensins induced in response to a Vibrio infection. We showed that the oyster big defensin family is composed of three members (named Cg-BigDef1, Cg-BigDef2 and Cg-BigDef3) that are encoded by distinct genomic sequences. All Cg-BigDefs contain a hydrophobic N-terminal domain and a cationic C-terminal domain that resembles vertebrate β-defensins. Both domains are encoded by separate exons. We found that big defensins form a group predominantly present in mollusks and closer to vertebrate defensins than to invertebrate and fungi CSαβ-containing defensins. Moreover, we showed that Cg-BigDefs are expressed in oyster hemocytes only and follow different patterns of gene expression. While Cg-BigDef3 is non-regulated, both Cg-BigDef1 and Cg-BigDef2 transcripts are strongly induced in response to bacterial challenge. Induction was dependent on pathogen associated molecular patterns but not damage-dependent. The inducibility of Cg-BigDef1 was confirmed by HPLC and mass spectrometry, since ions with a molecular mass compatible with mature Cg-BigDef1 (10.7 kDa) were present in immune-challenged oysters only. From our biochemical data, native Cg-BigDef1 would result from the elimination of a prepropeptide sequence and the cyclization of the resulting N-terminal glutamine residue into a pyroglutamic acid. We provide here the first report showing that big defensins form a family of antimicrobial peptides diverse not only in terms

Connectivity and genetic structure of the queen conch on the Mesoamerican Reef

Science.gov (United States)

Machkour-M'Rabet, Salima; Cruz-Medina, Jorge; García-De León, Francisco J.; De Jesús-Navarrete, Alberto; Hénaut, Yann

2017-06-01

The queen conch ( Strombus gigas) is a commercially important marine invertebrate that is widely distributed throughout the western Atlantic, from Bermuda to Brazil. Intense exploitation has resulted in a decrease in population numbers of this species, which is listed as protected from commercial exploitation under IUCN and CITES. Previous studies on population genetics have demonstrated contrasting results in terms of the population structure of S. gigas. This research analyzed the genetic connectivity of the queen conch over a wide area of the Mesoamerican Reef System to determine whether S. gigas presents one panmictic population or a more complex structure. Furthermore, we evaluated the risk of local extinction by establishing the genetic diversity of the studied populations. High resolution was obtained for the five ISSR markers used for a total of 190 individuals, from seven localities along the Mesoamerican Reef. Our results reject the panmictic structure hypothesis for the queen conch in the study area and demonstrate genetic patchiness, indicating general homogeneity among localities that present an isolation-by-distance pattern. However, some genetic temporal variation was confirmed for the Cozumel locality. Furthermore, our results reveal self-recruitment for the Alacranes Reef aggregation and suggest sufficient connectivity with localities on the Caribbean coast to maintain high genetic diversity. With regard to genetic diversity, the results demonstrate that the queen conch is not genetically threatened in the study area. This is probably due to high annual recruitment within Caribbean queen conch aggregations, and suggests that S. gigas is a highly resilient organism. We advocate that the appropriate management of S. gigas (fishing quota and/or closed season) must be followed to attain a rapid recovery of queen conch populations. This study represents a fundamental step in the understanding of the dynamic population structure of S. gigas in the

Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia.

Science.gov (United States)

Springer, Mark S; Signore, Anthony V; Paijmans, Johanna L A; Vélez-Juarbe, Jorge; Domning, Daryl P; Bauer, Cameron E; He, Kai; Crerar, Lorelei; Campos, Paula F; Murphy, William J; Meredith, Robert W; Gatesy, John; Willerslev, Eske; MacPhee, Ross D E; Hofreiter, Michael; Campbell, Kevin L

2015-10-01

The recently extinct (ca. 1768) Steller's sea cow (Hydrodamalis gigas) was a large, edentulous North Pacific sirenian. The phylogenetic affinities of this taxon to other members of this clade, living and extinct, are uncertain based on previous morphological and molecular studies. We employed hybridization capture methods and second generation sequencing technology to obtain >30kb of exon sequences from 26 nuclear genes for both H. gigas and Dugong dugon. We also obtained complete coding sequences for the tooth-related enamelin (ENAM) gene. Hybridization probes designed using dugong and manatee sequences were both highly effective in retrieving sequences from H. gigas (mean=98.8% coverage), as were more divergent probes for regions of ENAM (99.0% coverage) that were designed exclusively from a proboscidean (African elephant) and a hyracoid (Cape hyrax). New sequences were combined with available sequences for representatives of all other afrotherian orders. We also expanded a previously published morphological matrix for living and fossil Sirenia by adding both new taxa and nine new postcranial characters. Maximum likelihood and parsimony analyses of the molecular data provide robust support for an association of H. gigas and D. dugon to the exclusion of living trichechids (manatees). Parsimony analyses of the morphological data also support the inclusion of H. gigas in Dugongidae with D. dugon and fossil dugongids. Timetree analyses based on calibration density approaches with hard- and soft-bounded constraints suggest that H. gigas and D. dugon diverged in the Oligocene and that crown sirenians last shared a common ancestor in the Eocene. The coding sequence for the ENAM gene in H. gigas does not contain frameshift mutations or stop codons, but there is a transversion mutation (AG to CG) in the acceptor splice site of intron 2. This disruption in the edentulous Steller's sea cow is consistent with previous studies that have documented inactivating mutations in

A shell-formation related carbonic anhydrase in Crassostrea gigas modulates intracellular calcium against CO2 exposure: Implication for impacts of ocean acidification on mollusk calcification.

Science.gov (United States)

Wang, Xiudan; Wang, Mengqiang; Jia, Zhihao; Song, Xiaorui; Wang, Lingling; Song, Linsheng

2017-08-01

Ocean acidification (OA) could decrease the shells and skeletons formation of mollusk by reducing the availability of carbonate ions at calcification sites. Carbonic anhydrases (CAs) convert CO 2 to HCO 3 - and play important roles in biomineralization process from invertebrate to vertebrate. In the present study, a CA (designated as CgCA) was identified and characterized in Pacific oyster C. gigas. The cDNA of CgCA was of 927bp encoding a predicted polypeptide of 308 amino acids with a signal peptide and a CA catalytic function domain. The mRNA transcripts of CgCA were constitutively expressed in all tested tissues with the highest levels in mantle and hemocytes. During the early development period, the mRNA transcripts of CgCA could be detected in all the stages with the highest level in D-veliger larvae. Elevated CO 2 increased the mRNA transcripts of CgCA in muscle, mantle, hepatopancreas, gill and hemocytes significantly (p<0.05) and induced the translocation of CgCA in hemocytes and mantle. Moreover, elevated CO 2 also caused the decrease of intracellular Ca 2+ in hemocytes (p<0.05). The inhibition of CA by acetazolamide and suppression of CgCA gene via RNA interference could increase the intracellular Ca 2+ in hemocytes (p<0.05). Besides, the decrease of intracellular Ca 2+ content caused by Ca 2+ reagent ionomycin could affect localization of CgCA in mantle tissue. The results indicated CgCA played essential roles in calcification and elevated CO 2 accelerated the mutual modulation between calcium and CgCA, implying reduced calcification rate and dissolved shells under OA. Copyright © 2017 Elsevier B.V. All rights reserved.

Growth parameters and density variation of a queen conch, Strombus gigas (Neotaenioglossa: Strombidae), population from Xel-Ha park, a marine protected area.

Science.gov (United States)

Baqueiro Cárdenas, Erick; Aldana Aranda, Dalila

2014-03-01

The queen conch, Strombus gigas, is a gastropod of commercial importance in the Caribbean. Population studies are based on size frequency analysis, using either length or weight parameters for the whole live organism. This contribution used mark-recapture data to estimate the Von Bertalanffy equation parameters and population number variation within a non harvest population from a protected area, to clarify the biometric parameters that better suit for the whole population, or for the juvenile and adult fractions. Conchs from Xel-Ha Park were monthly sampled from November 2001 to August 2005. Every conch found was measured and marked with a numbered tag that identified month and locality; and monthly abundance was estimated with Jolly's method. Length, lip thickness and weight increments were used to estimate the Von Bertalanffy growth equation parameters with Appeldoorn's subroutine of FISAT program. The population number varied through the study, with a minimum of 49 in April 2003 and maximum of 9 848 during June 2005. Conchs make only temporary use of Xel-Ha cove. Shell length gave the best fit for the juvenile fraction: L(infinity)=251, K=0.3, C=0.8 Wp=0.3; and lip thickness for adults: L(infinity)=47.78, K=0.17, C=0.1, Wp=0.86, while, the whole population was better represented by weight: L(infinity)=3850, K=0.36, C=0.8, Wp=0.3. A maximum age of 19 years was estimated from the population. Natural mortality was 0.49/year for juveniles and 0.29/year for adults. There were two pulses of recruitment: fall-winter and summer. It is concluded that population studies from length frequency data, should be analyzed independently in two groups, shell for the juvenile fraction and lip thickness for the adult fraction, or if it is not possible to analyze the population fractions separately, weight should be used to avoid miss calculation of the age structure.

Big Defensins, a Diverse Family of Antimicrobial Peptides That Follows Different Patterns of Expression in Hemocytes of the Oyster Crassostrea gigas

Science.gov (United States)

Rosa, Rafael D.; Santini, Adrien; Fievet, Julie; Bulet, Philippe; Destoumieux-Garzón, Delphine; Bachère, Evelyne

2011-01-01

Background Big defensin is an antimicrobial peptide composed of a highly hydrophobic N-terminal region and a cationic C-terminal region containing six cysteine residues involved in three internal disulfide bridges. While big defensin sequences have been reported in various mollusk species, few studies have been devoted to their sequence diversity, gene organization and their expression in response to microbial infections. Findings Using the high-throughput Digital Gene Expression approach, we have identified in Crassostrea gigas oysters several sequences coding for big defensins induced in response to a Vibrio infection. We showed that the oyster big defensin family is composed of three members (named Cg-BigDef1, Cg-BigDef2 and Cg-BigDef3) that are encoded by distinct genomic sequences. All Cg-BigDefs contain a hydrophobic N-terminal domain and a cationic C-terminal domain that resembles vertebrate β-defensins. Both domains are encoded by separate exons. We found that big defensins form a group predominantly present in mollusks and closer to vertebrate defensins than to invertebrate and fungi CSαβ-containing defensins. Moreover, we showed that Cg-BigDefs are expressed in oyster hemocytes only and follow different patterns of gene expression. While Cg-BigDef3 is non-regulated, both Cg-BigDef1 and Cg-BigDef2 transcripts are strongly induced in response to bacterial challenge. Induction was dependent on pathogen associated molecular patterns but not damage-dependent. The inducibility of Cg-BigDef1 was confirmed by HPLC and mass spectrometry, since ions with a molecular mass compatible with mature Cg-BigDef1 (10.7 kDa) were present in immune-challenged oysters only. From our biochemical data, native Cg-BigDef1 would result from the elimination of a prepropeptide sequence and the cyclization of the resulting N-terminal glutamine residue into a pyroglutamic acid. Conclusions We provide here the first report showing that big defensins form a family of antimicrobial

Big defensins, a diverse family of antimicrobial peptides that follows different patterns of expression in hemocytes of the oyster Crassostrea gigas.

Directory of Open Access Journals (Sweden)

Rafael D Rosa

Full Text Available BACKGROUND: Big defensin is an antimicrobial peptide composed of a highly hydrophobic N-terminal region and a cationic C-terminal region containing six cysteine residues involved in three internal disulfide bridges. While big defensin sequences have been reported in various mollusk species, few studies have been devoted to their sequence diversity, gene organization and their expression in response to microbial infections. FINDINGS: Using the high-throughput Digital Gene Expression approach, we have identified in Crassostrea gigas oysters several sequences coding for big defensins induced in response to a Vibrio infection. We showed that the oyster big defensin family is composed of three members (named Cg-BigDef1, Cg-BigDef2 and Cg-BigDef3 that are encoded by distinct genomic sequences. All Cg-BigDefs contain a hydrophobic N-terminal domain and a cationic C-terminal domain that resembles vertebrate β-defensins. Both domains are encoded by separate exons. We found that big defensins form a group predominantly present in mollusks and closer to vertebrate defensins than to invertebrate and fungi CSαβ-containing defensins. Moreover, we showed that Cg-BigDefs are expressed in oyster hemocytes only and follow different patterns of gene expression. While Cg-BigDef3 is non-regulated, both Cg-BigDef1 and Cg-BigDef2 transcripts are strongly induced in response to bacterial challenge. Induction was dependent on pathogen associated molecular patterns but not damage-dependent. The inducibility of Cg-BigDef1 was confirmed by HPLC and mass spectrometry, since ions with a molecular mass compatible with mature Cg-BigDef1 (10.7 kDa were present in immune-challenged oysters only. From our biochemical data, native Cg-BigDef1 would result from the elimination of a prepropeptide sequence and the cyclization of the resulting N-terminal glutamine residue into a pyroglutamic acid. CONCLUSIONS: We provide here the first report showing that big defensins form a family

Seasonal changes in mRNA encoding for cell stress markers in the oyster Crassostrea gigas exposed to radioactive discharges in their natural environment

International Nuclear Information System (INIS)

Farcy, Emilie; Voiseux, Claire; Lebel, Jean-Marc; Fievet, Bruno

2007-01-01

The North Cotentin area (Normandy, France) hosts several nuclear facilities among which the AREVA reprocessing plant of La Hague is responsible for controlled discharges of liquid radioactive wastes into the marine environment. The resulting increase in radioactivity is very small compared to natural radioactivity. However, concerns about environment protection prompted the scientific community to focus on the effects of the chronic exposure to low concentrations of radionuclides in non-human biota. This study contributes to the evaluation of the possible impact of radioactive discharges on the oyster Crassostrea gigas in the field. Real-time polymerase chain reaction was used to quantify the expression levels of genes involved in cell stress in the oyster. They included members of the heat shock protein family (Hsp70, Hsc72, Hsp90), superoxide dismutase (SOD) and metallothionein (MT). Times series measurements were built from periodic samplings in the natural environment in order to characterize the natural variability as well as possible seasonal fluctuations. The genes studied exhibited a general seasonal expression pattern with a peak value in winter. The data inversely correlated with seawater temperature and the nature of the relationship between gene expression and temperature is discussed. In parallel, oysters were collected in four locations on the French shores, exposed or not to radioactive liquid wastes from the nuclear facilities hosted in the North Cotentin. The comparison of data obtained in the reference location on the Atlantic coast (not exposed) and data from oysters of the English Channel (exposed) gave no evidence for any statistical difference. However, because of the complexity of the natural environment, we cannot rule out the possibility that other parameters may have masked the impact of radioactive discharges. This dense set of data is a basis for the use of the expression levels of those genes as biomarkers to address the question of the

Contamination aspects in integrating high dielectric constant and ferroelectric materials into CMOS processes

OpenAIRE

Boubekeur, Hocine

2004-01-01

n memory technology, new materials are being intensively investigated to overcome the integration limits of conventional dielectrics for Giga-bit scale integration, or to be able to produce new types of non-volatile low power memories such as FeRAM. Perovskite type high dielectric constant films for use in Giga-bit scale memories or layered perovskite films for use in non-volatile memories involve materials to semiconductor process flows, which entail a high risk of contamination. The introdu...

Study of the impact of radionuclides discharges from nuclear industry in the northern Cotentin area on the oyster Crassostrea gigas: expression of cellular stress molecular markers; Etude de l'impact des radionucleides rejetes par les installations nucleaires du Nord Cotentin sur l'huitre creuse Crassostrea gigas: analyse de l'expression de marqueurs moleculaires de stress

Energy Technology Data Exchange (ETDEWEB)

Farcy, E

2006-11-15

This thesis explores the potential radiological impact of radionuclide discharges from the nuclear industry on the Pacific oyster, Crassostrea gigas. One of the major goals of this research was to identify markers that could be used to monitor the effects of low-level chronic irradiation. We decided to focalize on the expression of stress-induced genes involved in the regulation of cellular stress, focusing on transcription. First, homology cloning was used to identify four new cDNAs encoding stress markers. Then data collected at various sites enabled to evidence that mRNA levels for each of the genes of interest naturally vary to a significant degree, based on individual differences and seasonal factors. Comparing oysters from exposed sites with those from a reference site located on the Atlantic coast did not suggest any relationship between mRNA levels changes and the oysters exposure to liquid radioactive waste from the A.R.E.V.A. reprocessing plant. In the environment, we found that those radionuclide releases resulted in a very small increase in radioactivity in oysters, especially compared with their natural radioactivity. In the laboratory, by exposing the oysters to higher radionuclide concentrations than those found in the environment, we were able to identify two genes as potential candidates for studying the effects of chronic exposure to low doses of ionizing radiations in the oyster: genes encoding MT and MXR. We confirmed that transcriptional induction of these two genes occurs in response to high doses of acute irradiation. Finally, the comparison between environmental results and the laboratory results underlined the complementarity of these two approaches. In particular, it revealed that seasonal variations in mRNA levels probably have a significant effect on the stress response. (author)

Ostreid herpesvirus in wild oysters from the Huelva coast (SW Spain).

Science.gov (United States)

López-Sanmartín, M; López-Fernández, J R; Cunha, M E; De la Herrán, R; Navas, J I

2016-08-09

This is the first report of ostreid herpesvirus 1 microvariant (OsHV-1 µVar) infecting natural oyster beds located in Huelva (SW Spain). The virus was detected in 3 oyster species present in the intertidal zone: Crassostrea gigas (Thunberg, 1793), C. angulata (Lamarck, 1819) and, for the first time, in Ostrea stentina Payraudeau, 1826. Oysters were identified by a specific polymerase chain reaction (PCR) and posterior restriction fragment length polymorphism (RFLP) analysis based on cytochrome oxidase I (COI) mitochondrial DNA. Results confirmed that C. angulata still remains the dominant oyster population in SW Spain despite the introduction of C. gigas for cultivation in the late 1970s, and its subsequent naturalization. C. angulata shows a higher haplotype diversity than C. gigas. OsHV-1 virus was detected by PCR with C2/C6 pair primers. Posterior RFLP analyses with the restriction enzyme MfeI were done in order to reveal the OsHV-1 µVar. Detections were confirmed by DNA sequencing, and infections were evidenced by in situ hybridization in C. gigas, C. angulata and O. stentina samples. The prevalence was similar among the 3 oyster species but varied between sampling locations, being higher in areas with greater harvesting activities. OsHV-1 µVar accounted for 93% of all OsHV-1 detected.

Study of the impact of radionuclides discharges from nuclear industry in the northern Cotentin area on the oyster Crassostrea gigas: expression of cellular stress molecular markers

International Nuclear Information System (INIS)

Farcy, E.

2006-11-01

This thesis explores the potential radiological impact of radionuclide discharges from the nuclear industry on the Pacific oyster, Crassostrea gigas. One of the major goals of this research was to identify markers that could be used to monitor the effects of low-level chronic irradiation. We decided to focalize on the expression of stress-induced genes involved in the regulation of cellular stress, focusing on transcription. First, homology cloning was used to identify four new cDNAs encoding stress markers. Then data collected at various sites enabled to evidence that mRNA levels for each of the genes of interest naturally vary to a significant degree, based on individual differences and seasonal factors. Comparing oysters from exposed sites with those from a reference site located on the Atlantic coast did not suggest any relationship between mRNA levels changes and the oysters exposure to liquid radioactive waste from the A.R.E.V.A. reprocessing plant. In the environment, we found that those radionuclide releases resulted in a very small increase in radioactivity in oysters, especially compared with their natural radioactivity. In the laboratory, by exposing the oysters to higher radionuclide concentrations than those found in the environment, we were able to identify two genes as potential candidates for studying the effects of chronic exposure to low doses of ionizing radiations in the oyster: genes encoding MT and MXR. We confirmed that transcriptional induction of these two genes occurs in response to high doses of acute irradiation. Finally, the comparison between environmental results and the laboratory results underlined the complementarity of these two approaches. In particular, it revealed that seasonal variations in mRNA levels probably have a significant effect on the stress response. (author)

Defining population structure and genetic signatures of decline in the giant garter snake (Thamnophis gigas): implications for conserving threatened species within highly altered landscapes

Science.gov (United States)

Wood, Dustin A.; Halstead, Brian J.; Casazza, Michael L.; Hansen, Eric C.; Wylie, Glenn D.; Vandergast, Amy

2015-01-01

Anthropogenic habitat fragmentation can disrupt the ability of species to disperse across landscapes, which can alter the levels and distribution of genetic diversity within populations and negatively impact long-term viability. The giant gartersnake (Thamnophis gigas) is a state and federally threatened species that historically occurred in the wetland habitats of California’s Great Central Valley. Despite the loss of 93 % of historic wetlands throughout the Central Valley, giant gartersnakes continue to persist in relatively small, isolated patches of highly modified agricultural wetlands. Gathering information regarding genetic diversity and effective population size represents an essential component for conservation management programs aimed at this species. Previous mitochondrial sequence studies have revealed historical patterns of differentiation, yet little is known about contemporary population structure and diversity. On the basis of 15 microsatellite loci, we estimate population structure and compare indices of genetic diversity among populations spanning seven drainage basins within the Central Valley. We sought to understand how habitat loss may have affected genetic differentiation, genetic diversity and effective population size, and what these patterns suggest in terms of management and restoration actions. We recovered five genetic clusters that were consistent with regional drainage basins, although three northern basins within the Sacramento Valley formed a single genetic cluster. Our results show that northern drainage basin populations have higher connectivity than among central and southern basins populations, and that greater differentiation exists among the more geographically isolated populations in the central and southern portion of the species’ range. Genetic diversity measures among basins were significantly different, and were generally lower in southern basin populations. Levels of inbreeding and evidence of population

Gene expression profiling in the ovary of Queen conch (Strombus gigas) exposed to environments with high tributyltin in the British Virgin Islands

International Nuclear Information System (INIS)

Titley-O'Neal, Cassander P.; Spade, Daniel J.; Zhang, Yanping; Kan, Rosalinda; Martyniuk, Christopher J.; Denslow, Nancy D.; MacDonald, Bruce A.

2013-01-01

Queen conch (Strombus gigas) are listed in CITES Appendix II. Populations may be declining due to anthropogenic inputs that include pollutants from boating activity. In the British Virgin Islands (BVI), some conch exhibit imposex, a condition in which male external genitalia are present in female conch. Previous studies suggest that tributyltin (TBT), an antifouling chemical used in boat paint, is correlated to increased incidence of imposex although the mechanisms leading to imposex are not known. The present study utilized a Queen conch microarray to measure the response of the ovarian transcriptome in conch inhabiting polluted environments with high TBT levels in the BVI. The polluted sites, Road Harbour (RH) and Trellis Bay (TB), are areas with high boating activity while the reference sites, Guana Island (GI) and Anegada (AN), are areas with low boating activity. There were 754 and 898 probes differentially expressed in the ovary of conch collected at RH and TB respectively compared to conch collected at GI. Of the genes that were differentially expressed at both sites, > 10% were shared suggesting that these sites have additional environmental factors influencing gene expression patterns. Functional enrichment analysis showed that the biological processes of cell proliferation, translation, and oxidative stress were over-represented in the polluted sites. Gene set enrichment analysis revealed that transcripts involved in the biological processes of general metabolism, immune, lipid metabolism, and stress were affected in conch from polluted environments. Interestingly, altered stress genes appeared to be more prevalent in conch collected from RH than TB, corresponding to the higher TBT load at RH compared to TB. Our study shows that stress pathways are affected in conch ovary in environments that experience heavy boating activity in the BVIs, although we are unable to directly link changes at the transcriptomics level to high TBT levels. Highlights: �

Gene expression profiling in the ovary of Queen conch (Strombus gigas) exposed to environments with high tributyltin in the British Virgin Islands

Energy Technology Data Exchange (ETDEWEB)

Titley-O' Neal, Cassander P. [Department of Biology, University of New Brunswick, Saint John, New Brunswick, Canada E2L 4L5 (Canada); Spade, Daniel J. [Department of Physiological Sciences and Center for Environmental and Human Toxicology, University of Florida, Gainesville, FL 32611 (United States); Zhang, Yanping [Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32611 (United States); Kan, Rosalinda; Martyniuk, Christopher J. [Department of Biology, University of New Brunswick, Saint John, New Brunswick, Canada E2L 4L5 (Canada); Denslow, Nancy D. [Department of Physiological Sciences and Center for Environmental and Human Toxicology, University of Florida, Gainesville, FL 32611 (United States); MacDonald, Bruce A., E-mail: bmacdon@unbsj.ca [Department of Biology, University of New Brunswick, Saint John, New Brunswick, Canada E2L 4L5 (Canada)

2013-04-01

Queen conch (Strombus gigas) are listed in CITES Appendix II. Populations may be declining due to anthropogenic inputs that include pollutants from boating activity. In the British Virgin Islands (BVI), some conch exhibit imposex, a condition in which male external genitalia are present in female conch. Previous studies suggest that tributyltin (TBT), an antifouling chemical used in boat paint, is correlated to increased incidence of imposex although the mechanisms leading to imposex are not known. The present study utilized a Queen conch microarray to measure the response of the ovarian transcriptome in conch inhabiting polluted environments with high TBT levels in the BVI. The polluted sites, Road Harbour (RH) and Trellis Bay (TB), are areas with high boating activity while the reference sites, Guana Island (GI) and Anegada (AN), are areas with low boating activity. There were 754 and 898 probes differentially expressed in the ovary of conch collected at RH and TB respectively compared to conch collected at GI. Of the genes that were differentially expressed at both sites, > 10% were shared suggesting that these sites have additional environmental factors influencing gene expression patterns. Functional enrichment analysis showed that the biological processes of cell proliferation, translation, and oxidative stress were over-represented in the polluted sites. Gene set enrichment analysis revealed that transcripts involved in the biological processes of general metabolism, immune, lipid metabolism, and stress were affected in conch from polluted environments. Interestingly, altered stress genes appeared to be more prevalent in conch collected from RH than TB, corresponding to the higher TBT load at RH compared to TB. Our study shows that stress pathways are affected in conch ovary in environments that experience heavy boating activity in the BVIs, although we are unable to directly link changes at the transcriptomics level to high TBT levels. Highlights: �

Evaluation of insecticides in different dosages to control cicadas in parica plantations

Directory of Open Access Journals (Sweden)

Odineila Martins Monteiro

2014-07-01

Full Text Available This study aimed to determine the more efficient and economically viable dosage of chemical insecticide to control Quesada gigas (Hemiptera: Cicadidae nymphs in parica plantations. Three dosages of three products (carbofuran, imidacloprid and thiamethoxam were tested based on the maximum recommended dosage for the control of cicadas in coffee plants and applied in total area. The dosage of one kilogram of a commercial product based in thiamethoxam per hectare was more efficient economically and environmentally to control nymphs of Q. gigas in parica plantations.

A revision and phylogenetic analysis of the millipede genus Oxidus Cook, 1911 (Polydesmida, Paradoxosomatidae

Directory of Open Access Journals (Sweden)

Anh D. Nguyen

2017-03-01

Full Text Available The genus Oxidus Cook, 1911 is revised to contain five species, O. avia (Verhoeff, 1937, O. gigas (Attems, 1953, O. gracilis (C.L. Koch, 1847, O. riukiaria (Verhoeff, 1940, and “species inquirenda” O. obtusus (Takakuwa, 1942. A cosmopolitan species, O. gracilis, is widely found in temperate and sub-tropical regions over the world, but other species have limited distribution in restricted regions, e.g., O. gigas in northern Vietnam, O. riukiaria and O. avia in the Ryukyu Islands (Japan. Four species, O. gracilis, O. riukiaria, O. avia and O. gigas, are confirmed as different from each other in gonopod characters, coloration and body size. The status of the last species, O. obtusus, is still doubtful and requires examination of further fresh material. The phylogenetic relationships among species of Oxidus is analyzed using two fragments of the mitochondrial genes COI (Cytochrome c Oxidase subunit I and 16S rRNA. Three species of Oxidus are clearly separated from each other; O. gigas and O. gracilis form a monophyletic sister group with O. riukiaria. The genus Oxidus is also monophyletic and more closely related to the genus Tylopus Jeekel, 1968 than to the genera Sellanucheza Enghoff, Golovatch & Nguyen, 2004 or Kronopolites Attems, 1914. In addition, an identification key to species of Oxidus is provided.

Re-evaluation of the socio-economical cost for straw

International Nuclear Information System (INIS)

Nikolaisen, L.

1993-03-01

The socio-economical price for straw is calculated. Prices per ton are for the year 1984, 230 Danish kroner per ton and 15.53 kroner per giga joule, for 1990, 291 kroner per ton and 19.40 per giga joule and for 1992, 171 kroner per ton and 11.81 per giga joule. This development reflects that in the case of some machines there has been a fall in price, and that the operation capacity has in many instances increased. The calculation of storage costs must be seen in relation to the current discussion on acceptable straw qualities. The calculated storage costs are based on the consideration of 6 storage possibilities. It was attempted to price the management methods in relation to equipment which is most used by farmers and lorry drivers daily. An example of this is that tranportation calculations are based on the probable use of secondhand renovated lorries, as new ones can not be afforded. Sliced straw is not included in the calculations. (AB) (16 refs.)

Metabolic Energy Demand Is Not Increased during Initial Shell Formation of Bivalves Exposed to Aragonite Undersaturation

Science.gov (United States)

Pan, F.; Frieder, C.; Applebaum, S.; Manahan, D. T.

2016-02-01

The Pacific oyster, Crassostrea gigas, is a major commercial species in global aquaculture. Ocean acidification is having a negative effect on larval production of this species, so the mechanisms of this impact are of considerable interest. Formation of new shell in C. gigas during the first 2-days post-fertilization results in a rapid six-fold increase in total mass. This period of early development has high sensitivity to changes in carbonate chemistry, in particular aragonite saturation state (Ω). An elevated energy cost for calcification at low Ω is often invoked as a mechanism. In this study, we characterized the developmental progression of first shell formation, total metabolic expenditure, and underlying biochemical processes of energy allocation during early development of C. gigas, under control (Ω >> 1) and undersaturated conditions (Ω pump activity (Na+, K+-ATPase) between the two treatments. We conclude that early development to the shelled-veliger larval stage does not require more energy at undersaturation. This finding helps constrain potential mechanisms of larval sensitivity to ocean acidification and narrows the focus for possible mitigation strategies for oyster aquaculture production.

Warm temperature acclimation impacts metabolism of paralytic shellfish toxins from Alexandrium minutum in commercial oysters.

Science.gov (United States)

Farrell, Hazel; Seebacher, Frank; O'Connor, Wayne; Zammit, Anthony; Harwood, D Tim; Murray, Shauna

2015-09-01

Species of Alexandrium produce potent neurotoxins termed paralytic shellfish toxins and are expanding their ranges worldwide, concurrent with increases in sea surface temperature. The metabolism of molluscs is temperature dependent, and increases in ocean temperature may influence both the abundance and distribution of Alexandrium and the dynamics of toxin uptake and depuration in shellfish. Here, we conducted a large-scale study of the effect of temperature on the uptake and depuration of paralytic shellfish toxins in three commercial oysters (Saccostrea glomerata and diploid and triploid Crassostrea gigas, n = 252 per species/ploidy level). Oysters were acclimated to two constant temperatures, reflecting current and predicted climate scenarios (22 and 27 °C), and fed a diet including the paralytic shellfish toxin-producing species Alexandrium minutum. While the oysters fed on A. minutum in similar quantities, concentrations of the toxin analogue GTX1,4 were significantly lower in warm-acclimated S. glomerata and diploid C. gigas after 12 days. Following exposure to A. minutum, toxicity of triploid C. gigas was not affected by temperature. Generally, detoxification rates were reduced in warm-acclimated oysters. The routine metabolism of the oysters was not affected by the toxins, but a significant effect was found at a cellular level in diploid C. gigas. The increasing incidences of Alexandrium blooms worldwide are a challenge for shellfish food safety regulation. Our findings indicate that rising ocean temperatures may reduce paralytic shellfish toxin accumulation in two of the three oyster types; however, they may persist for longer periods in oyster tissue. © 2015 John Wiley & Sons Ltd.

Systemic Approach to Architectural Performance

Directory of Open Access Journals (Sweden)

Marie Davidova

2017-04-01

Full Text Available First-hand experiences in several design projects that were based on media richness and collaboration are described in this article. Although complex design processes are merely considered as socio-technical systems, they are deeply involved with natural systems. My collaborative research in the field of performance-oriented design combines digital and physical conceptual sketches, simulations and prototyping. GIGA-mapping - is applied to organise the data. The design process uses the most suitable tools, for the subtasks at hand, and the use of media is mixed according to particular requirements. These tools include digital and physical GIGA-mapping, parametric computer aided design (CAD, digital simulation of analyses, as well as sampling and 1:1 prototyping. Also discussed in this article are the methodologies used in several design projects to strategize these tools and the developments and trends in the tools employed.  The paper argues that the digital tools tend to produce similar results through given pre-sets that often do not correspond to real needs. Thus, there is a significant need for mixed methods including prototyping in the creative design process. Media mixing and cooperation across disciplines is unavoidable in the holistic approach to contemporary design. This includes the consideration of diverse biotic and abiotic agents. I argue that physical and digital GIGA-mapping is a crucial tool to use in coping with this complexity. Furthermore, I propose the integration of physical and digital outputs in one GIGA-map and the participation and co-design of biotic and abiotic agents into one rich design research space, which is resulting in an ever-evolving research-design process-result time-based design.

Morphology of the larval shell of three oyster species of the genus Crassostrea Sacco, 1897 (Bivalvia: Ostreidae).

Science.gov (United States)

Christo, S W; Absher, T M; Boehs, G

2010-08-01

In this study we describe the morphology of the larval shell of three oyster species of Crassostrea genus. Two species, C. rhizophorae and C. brasiliana, are native to the Brazilian coast, and C. gigas is an introduced species. Samples of laboratory reared larvae, obtained through artificial fertilisation, were collected at intervals during the cultivation process for analysis using Scanning Electron Microscopy (SEM). Prodissoconch morphology was observed in relation to the presence, position, form and number of teeth in the three larval stages: D-shaped larva, umbo larva and pediveliger. Characteristic of D-shaped larvae of C. rhizophorae was the total absence of teeth in the provinculum area while C. brasiliana and C. gigas had two anterior and two posterior teeth in each valve. In the umbo larval phase, the three species had the same number of teeth in each valve: two posterior and two anterior teeth in the right valve and three posterior and three anterior in the left valve. In the pediveliger stage the three species could be differentiated by the number of anterior teeth of the right valve: C. rhizophorae had two teeth, C. brasiliana one tooth and C. gigas three teeth.

Morphology of the larval shell of three oyster species of the genus Crassostrea Sacco, 1897 (Bivalvia: Ostreidae

Directory of Open Access Journals (Sweden)

SW. Christo

Full Text Available In this study we describe the morphology of the larval shell of three oyster species of Crassostrea genus. Two species, C. rhizophorae and C. brasiliana, are native to the Brazilian coast, and C. gigas is an introduced species. Samples of laboratory reared larvae, obtained through artificial fertilisation, were collected at intervals during the cultivation process for analysis using Scanning Electron Microscopy (SEM. Prodissoconch morphology was observed in relation to the presence, position, form and number of teeth in the three larval stages: D-shaped larva, umbo larva and pediveliger. Characteristic of D-shaped larvae of C. rhizophorae was the total absence of teeth in the provinculum area while C. brasiliana and C. gigas had two anterior and two posterior teeth in each valve. In the umbo larval phase, the three species had the same number of teeth in each valve: two posterior and two anterior teeth in the right valve and three posterior and three anterior in the left valve. In the pediveliger stage the three species could be differentiated by the number of anterior teeth of the right valve: C. rhizophorae had two teeth, C. brasiliana one tooth and C. gigas three teeth.

Giga-Voxel Structural Optimization

DEFF Research Database (Denmark)

Aage, Niels; Andreassen, Erik; Lazarov, Boyan Stefanov

2017-01-01

The optimal topology of large structural systems has until now been concerned with the design of individual parts and not that of complete assemblies. However, due to recent advances in numerical algorithms tailored for large scale structural optimization this limitation can now be circumvented....... In this work we present several examplesdisplaying how high resolution topology optimization can be used to obtain new, as well as already known, insight within the field of structural optimization. To demonstrate the capabilities of the developed framework we apply it to the design of the supporting structure...... topology optimization provides new insight and possible weight savings forfuture aircraft designs....

AviaBaltika accounts frozen by prosecutors

Index Scriptorium Estoniae

2003-01-01

President Rolandas Paksase valimiskampaania sponsorile Juri Borissovile kuuluva helikopterifirma Avia Baltika pangaarvete arestimisest seoses arvatava seadusevastase kopteriosade müügiga terrorismi toetavale Sudaanile

Project plan for PACS networking construction and cabling

International Nuclear Information System (INIS)

Luo Min; Wang Xiaolin; Luo Song; Lei Wenyong; Wang Xuejian; Wen Hongyue; Wu Hongxing

2002-01-01

Objective: To meet the networking requirement of the heave data flow, load balance, and potential networking storm during expanding the application of PACS. Methods: Intel Net Structure 480T Giga Switch was used as main switch and connected to each building by optical channel at 1 Giga speed to archive 100 MB/s to each port. At the same time, the in dependence of the original networking construction was physically kept. The layer 3 and 4 switchers was used as load balance to reduce the heavy load of the networking, and all the cabling for PACS used the super CAT5 along with the Intel Net Structure 1520 to prepare for the potential networking storm. Results: An advanced intranet was set up to fully meet the high standard requirement of PACS. The good foundation for upgrading the whole networking system to 1 Giga application was built for realized share and transmission of image, information, and patient data within the hospital. The base was established for the standardized management of the hospital. Conclusion: Good planning is the 1 st step in setting up PACS and the equipment are the platform to run PACS and all kinds of HIS. The networking construction is the foundation of e-hospitals

Método para monitoramento de ninfas de cigarras e controle com inseticidas em reflorestamentos com paricá Method for monitoring nymphs of cicadas and control with insecticides in reforestations with paricá

Directory of Open Access Journals (Sweden)

Alexandre Mehl Lunz

2010-07-01

Full Text Available O objetivo deste trabalho foi estabelecer um método para o monitoramento da população de cigarras (Quesada gigas e para a avaliação da eficácia de doses de thiamethoxam, carbofuran e imidaclopride no controle de ninfas, em reflorestamento com paricá (Schizolobium parahyba var. amazonicum. Foram utilizadas as seguintes dosagens de inseticidas: 2,0, 4,0 e 6,0 kg ha-1 do produto comercial Actara (250 WG, para o princípio ativo thiamethoxan; 7,15, 14,30, 21,45 L ha-1 de Furadan (350 FS, para o carbofuran; e 4,5, 9,0, 13,5 L ha-1 de Provado (200 SC, para o imidaclopride. As três dosagens de cada produto foram aplicadas em área total. Foram realizadas três avaliações quinzenais, posteriores à aplicação, em que foram contabilizados os números de buracos e de ninfas vivas, por meio da abertura, com implemento tratorizado, de trincheiras com 7 m de comprimento, 0,8 m de largura e 0,07 m de profundidade. Todos os princípios ativos testados foram eficientes na redução da população de ninfas de Q. gigas, mas não houve efeito significativo das doses avaliadas. Os princípios ativos carbofuran e thiamethoxan são os mais promissores, com controle de 75-80% da infestação de ninfas. A abertura de trincheiras com o implemento tratorizado é eficaz no monitoramento da população de ninfas de Q. gigas, em reflorestamentos com paricá.The objective of this work was to establish a method for cicad (Quesada gigas population monitoring and for the evaluation of the effectiveness of thiamethoxam, carbofuran and imidacloprid doses on the control of cicad nymphs, in reforestation with paricá (Schizolobium parahyba var. amazonicum. The following insecticide doses were used: 2.0, 4.0, and 6.0 kg ha-1 of Actara (250 WG commercial product, for thiamethoxam active principle; 7.15, 14.30, and 21.45 L ha-1 of Furadan (350 FS, for carbofuran; 4.0, 9.0, and 13.5 L ha-1 of Provado (200 SC, for imidacloprid. The three doses of each product were applied in

Fracture analysis of an Eocene reservoir in Eastern Tunisia by coupling Terrestrial Laser Scanning with GigaPan Technology and seismic attribute

Science.gov (United States)

Mastouri, Raja; Guerin, Antoine; Marchant, Robin; Derron, Marc-Henri; Boulares, Achref; Lazzez, Marzouk; Marillier, François; Jaboyedoff, Michel; Bouaziz, Samir

2015-04-01

It is usually not possible to study in situ fractures and faults of oil reservoirs. Then outcropping reservoir analogues are used instead. For this purpose, Terrestrial Laser Scanning (TLS) has been increasingly used for some years in the petroleum sector. The formations El Garia and Reineche make the Eocene oil reservoir of Eastern Tunisia. The fracturing of these formations has been analyzed on the surface by TLS on a reservoir analogue outcrop and in the depth by 3D seismic data. TLS datasets provide clear information on fracture geometry distribution (spacing and persistence), connectivity and joint orientation. These results were then compared to structures observed in depth with seismic data. The reservoir analogues are the Ousselat cliff (formation El Garia) and the Damous quarry (formation Reineche). Those two sites are made of marine limestone rich in large foraminifers, gastropods and nummulites. Fieldwork, TLS acquisitions and high-resolution GigaPan panoramas were put together to create digital outcrop models. A total of 9 scans at 3 different survey positions were carried out. Firstly, the data processing (cleaning, alignment and georeferencing of the raw point clouds) was carried out using the Polyworks software. Secondly, we draped Gigapixel pictures on the triangular mesh generated with 3DReshaper to produce relief shading. This process produces a photorealistic model that gives a 3D representation of the outcrop. Finally, Coltop3D was used to identify the different sets of discontinuities and to measure their orientations. Furthermore, we used some 3D seismic attribute data to interpret approximately 60 fractures and faults at the top of the Eocene reservoir. The Coltop3D analysis of the Ousselat cliff shows 5 sets of joints and fractures, with different dips and dip directions. They all strike in directions NW-SE, NNE-SSW, NE-SW and ENE-WSW. Using the photorealistic model, we measured approximately 120 fracture spacings ranging from 1.75m to 10m

Monogeneans from Pangasiidae (Siluriformes in Southeast Asia: III. Five new species of Thaparocleidus Jain, 1952 (Ancylodiscoididae from Pangasius bocourti, P. djambal and P. hypophthalmus

Directory of Open Access Journals (Sweden)

Pariselle A.M.

2002-09-01

Full Text Available The examination of gill parasites from Pangasius bocourti Sauvage, 1880; P. djambal Bleeker, 1846; P. hypophthalmus (Sauvage, 1878 and P. gigas Chevey, 1930 (Siluriformes, Pangasiidae revealed the presence of seven species of Monogenea among which five are considered new species. They all belong to Thaparocleidus Jain, 1952 (Ancylodiscoididae as defined by Lim (1996 and Lim et al. (2001. . P. bocourti: T. combesi n. sp.: T. komarudini n. sp. and T. vietnamensis n. sp. . P. djambal: T. caecus (Mizelle & Kritsky, 1969, T. combesi n. sp., T. euzeti n. sp., T. komarudini n. sp. and T. sadilii n. sp. . P. hypophthalmus: T. caecus, T. siamensis (Lim, 1990 and T. vietnamensis n. sp. . P. gigas : no Monogenea were found on this host species.

Asjalikud autoraamatud / Juhan Habicht

Index Scriptorium Estoniae

Habicht, Juhan, 1954-

1998-01-01

Maailma suurima autoraamatute postimüügiga tegeleva firma 'Classic Motorbooks' koostatud nimekiri Ameerika populaarsematest autoraamatutest. Nimekirjas esikohal olevast autodisainerile mõeldud Thom Taylori raamatust 'How to Draw Cars Like a Pro'.

Ettevaatust - majavamm!

Index Scriptorium Estoniae

2007-01-01

Nõuandeid majavammiga võitlemiseks jagavad Margus Helisalu puidukahjustuste likvideerimisega tegelevast firmast Antivamm Ehitus OÜ ja Heiki Kruusalu majavammi tõrjeks mõeldud kemikaalide müügiga tegelevast firmast Pest-Chemical OÜ

A survey for gregarines (Protozoa: Apicomplexa) in arthropods in Spain.

Science.gov (United States)

Criado-Fornelio, A; Verdú-Expósito, C; Martin-Pérez, T; Heredero-Bermejo, I; Pérez-Serrano, J; Guàrdia-Valle, L; Panisello-Panisello, M

2017-01-01

Gregarines thrive in the digestive tract of arthropods and may be deleterious to their hosts, especially when present in high densities. The impact of parasites on these invertebrates may affect both the ecosystem equilibrium and human economic activities. However, information available on gregarines in Spain is limited. Therefore, a microscopic study on prevalence of gregarine infection in 560 insects and crustaceans was undertaken in Madrid and Tarragona.Gregarina ormierei (78 % prevalence), Stylocephalus gigas (56 %), Oocephalus hispanus (13 %) and Actinocephalus permagnus (only one infected out of six beetles examined) were found in coleopteran hosts. Gregarina ovata and G. chelidurellae showed moderate frequency of infection (35 %) in dermapterans. An undescribed Gregarina sp. (76 % prevalence) was observed for the first time in freshwater decapod crustaceans. Interestingly, G. ormierei showed a noticeable phenotypic dimorphism, which justifies its redescription based on modern taxonomic criteria. Sequences of the 18S rRNA gene could be obtained only in the presence of highly prevalent gregarines. G. ormierei and Gregarina sp. were related (85 and 94 % identity by BLASTN, respectively) to G. basiconstrictonea and G. cloptoni, respectively, whereas S. gigas was closely related to both Xiphocephalus ellisi and S. giganteus (>97 % identity). Phylogenetic trees based on ribosomal sequences unequivocally grouped these new isolates either with the Gregarinidae (G. ormierei and Gregarina sp.) or the Stylocephalidae (S. gigas).

Välgukiirusel minitehingud / Silvia Viidik

Index Scriptorium Estoniae

Viidik, Silvia, 1972-

2010-01-01

Viimastel aastatel on suurenenud välkkauplemise (high-frequency trading) populaarsus, kus väärtpaberite ostu või müügiga tegelevad masinad, mis matemaatiliste algoritmide najal teevad tehinguid inimestest kiiremini

Eesti Kaitsetööstuse Liidu liige Nordic Armoury OÜ

Index Scriptorium Estoniae

2010-01-01

Eesti Kaitsetööstuse Liitu kuuluvast relvade, optikaseadmete ning optikaseadmete ja muude lisatarvikute relvadele kinnitamise võimaluste tootmise, tarnimise, arendamise ja müügiga tegelevast OÜ-st Nordic Armoury (NodArm)

A CMOS 0.13 mu m, 5-Gb/s laser driver for high energy physics applications

CERN Document Server

Mazza, G; Moreira, P; Rivetti, A; Soos, C; Troska, J; Wyllie, K

2012-01-01

The GigaBit Laser Driver (GBLD) is a radiation tolerant ASIC designed to drive both edge emitting lasers and VCSELs at data rates up to 5 Gb/s. It is part of the GigaBit Transceiver (GBT) and Versatile Link projects, which are designing a bi-directional optical data transmission system capable of operating in the radiation environment of a typical HEP experiment. The GBLD can provide laser diode modulation currents up to 24 mA and laser bias currents up to 43 mA. Pre- and de-emphasis functions are implemented to compensate for high external capacitive loads and asymmetric laser response. The chip, designed in a 0.13 $\\mu$m CMOS technology, is powered by a single 2.5 V power supply and can be programmed via an $I2C$ interface.

Late Ordovician brachiopods from eastern North Greenland

DEFF Research Database (Denmark)

Mac Ørum Rasmussen, Christian

2013-01-01

Late Ordovician rhynchonelliformean brachiopods, typical of the North American Red River fauna, are found sporadically in the BOrglum River Formation of the Centrum SO area, Kronprins Christian Land, eastern North Greenland. The geographical distribution of this characteristic brachiopod fauna......) to younger strata exclusively yielding specimens of H.gigas. As H.gigas occurs in the upper part of the Cape Calhoun Formation in Washington Land, it indicates that the upper boundary of the Cape Calhoun Formation is considerably younger than previous estimates, reaching into the uppermost Katian (middle...... (Richmondian), it possesses a strong provincial signal during the later Ordovician. The new occurrences indicate that this fauna extended to the north-eastern margin of the Laurentian Craton. It lived in close association with cosmopolitan faunal elements that may have been the earliest sign of the succeeding...

High Speed Digitizer for Remote Sensing, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — Alphacore, Inc. proposes to design and characterize a 24Gsps (giga-samples per-second), 6-bit, low-power, and low-cost analog-to-digital converter (ADC) for use in a...

Comparative feeding on chlorophyll - rich versus remaining organic matter in bivalve shellfish

NARCIS (Netherlands)

Hawkins, A.; Pascoe, P.L.; Parry, H.; Brinsley, M.; Cacciatore, F.; Black, K.; Fang, J.; Smaal, A.C.

2013-01-01

Filter feeding was compared in the blue mussel Mytilus edulis, Mediterranean mussel Mytilus galloprovincialis, Pacific oyster Crassostrea gigas, Chinese pleated oyster Crassostrea plicatula, Chinese scallop Chlamys farreri,Manila clam Tapes phillipinarum, razor clam Sinonvacula constricta, and blood

Set prodavtsov na odnogo dilera / Sergei Kolikov

Index Scriptorium Estoniae

Kolikov, Sergei

2004-01-01

Peugeot' ametlik esindaja Eestis Kommest Auto AS täitis automüüjatele kehtestatud euronormatiivid. Peugeot' autode müügiga on nüüdsest Eestis tegevad kaks juriidilist isikut: Kommest Auto ja OÜ Kommest Autokeskused

ELKE Grupi dividendid aina kasvavad / Peeter Raidla

Index Scriptorium Estoniae

Raidla, Peeter, 1955-

2008-01-01

Eestis, Lätis ja Leedus automüügiga tegeleva ELKE Grupi AS omanikud naudivad jätkuvalt rikkalikke dividende, 2007. a. omanikele jagatav kasumieraldis on 42 miljonit krooni. Firma omanikering, investeeringud. Lisa: ELKE Grupi majandusnäitajad

Phenoloxidase activity in larval and juvenile homogenates and adult plasma and haemocytes of bivalve molluscs.

Science.gov (United States)

Luna-González, Antonio; Maeda-Martínez, Alfonso N; Vargas-Albores, Francisco; Ascencio-Valle, Felipe; Robles-Mungaray, Miguel

2003-10-01

Phenoloxidase (PO) activity was studied in larval and juvenile homogenates and in the plasma and haemocytes of adult Crassostrea gigas, Argopecten ventricosus, Nodipecten subnodosus, and Atrina maura. Samples were tested for the presence of PO activity by incubation with the substrate L-3, 4-dihydroxyphenylalanine using trypsin, alpha-chymotrypsin, laminarin, lipopolysaccharides (LPS), and sodium dodecyl sulphate (SDS) to elicit activation of prophenoloxidase (proPO) system. PO activity was not detected in larval homogenate. In juvenile homogenate, PO activity was found only in C. gigas and N. subnodosus. PO activity was present in adult samples and was enhanced by elicitors in the plasma of all species tested, but in haemocyte lysate supernatant (HLS) of only N. subnodosus. Activation of proPO by laminarin was suppressed by a protease inhibitor cocktail (P-2714) in plasma and HLS of all species tested.

Research Article Special Issue

African Journals Online (AJOL)

2017-02-15

Feb 15, 2017 ... Prices and conditions facing raw materials and consumption market of the projects are ... encountered in the analysis of investment in Giga projects is their impact on the ..... Iran's Natural gas export to Europe with pipe line.

Journal of Genetics | Indian Academy of Sciences

Indian Academy of Sciences (India)

GGAT)4, (GT)7 and (TA)10 onto metaphase chromosomes of the Pacific oyster, Crassostrea gigas. Hybridization signals were observed in all the SSR probes, but the distribution and intensity of signals varied according to the oligonucleotide repeat ...

Palts ja Peek kulutasid advokaatidele ligi miljoni

Index Scriptorium Estoniae

2007-01-01

Riigikohtu otsus maksuameti edasikaebust mitte arutada ja jätta jõusse Tallinna ringkonnakohtu otsus võttis Tõnis Paltsult ja Toomas Peekilt maksupetturluse süüdistuse seoses sidefirma AS Levicomi müügiga Tele 2 AB kontsernile

Immunocytochemical localization of APS reductase and bisulfite reductase in three Desulfovibrio species

NARCIS (Netherlands)

Kremer, D.R.; Veenhuis, M.; Fauque, G.; Peck Jr., H.D.; LeGall, J.; Lampreia, J.; Moura, J.J.G.; Hansen, T.A.

1988-01-01

The localization of APS reductase and bisulfite reductase in Desulfovibrio gigas, D. vulgaris Hildenborough and D. thermophilus was studied by immunoelectron microscopy. Polyclonal antibodies were raised against the purified enzymes from each strain. Cells fixed with formaldehyde/glutaraldehyde were

COMPARISON OF CARBON AND NITROGEN FLUXES IN TIDEFLAT FOOD WEBS DOMINATED BY BURROWING SHRIMP OR BY CULTURED OYSTERS

Science.gov (United States)

Two species of indigenous, thalassinid burrowing shrimps are pests to the benthic culture of Pacific oysters (Crassostrea gigas) because deposition of sediment excavated by the shrimps buries or smothers the oysters. Carbaryl pesticide is used to reduce burrowing shrimp densitie...

Fluorestseeruvad ja UV-värvingud kohapüügil / Ralf Mae

Index Scriptorium Estoniae

Mae, Ralf

2015-01-01

Teooriaga, et kohad on võimelised eristama inimsilmale nähtamatut ultravioleti spektriosa, on küllap kursis iga spinningumees, kes kohapüügiga tõsisemalt tegelenud. Autor testis UV-lambi all oma lemmiklante ja veendus, et enamik neist helendasid

Sõja neljas päev: paigalseis Eufrati joonel

Index Scriptorium Estoniae

2003-01-01

Sõjategevust Iraagis kajastav Iraagi ja Bagdadi kaart. KH-11 Keyhole luuresatelliit. Skeem: USA katse tappa Saddam avalöögiga. B-52 raskepommitaja hävitusjõud. Skeem: USA Patriot-rakett tulistas alla Briti sõjalennuki. Patriot - õhutõrjesüsteem

Jarman and C

African Journals Online (AJOL)

denise

Reproduction and recruitment of the surf clam Donax serra on two Namibian beaches were ..... Sea Fish. Brch S. Afr. 102: 33 pp. DIAZ, R. L. and R. ROSENBERG 1995 — Marine ... (Crassostrea gigas) larvae fed on semi-defined artificial diets.

Distribution and biomass estimation of shell-boring algae in the intertidal area at Goa India

Digital Repository Service at National Institute of Oceanography (India)

Raghukumar, C.; Sharma, S.; Lande, V.

The distribution and frequency of shell-boring green and blue-green algae in the intertidal at Goa, India were studied. The green alga Gomontia sp. and the blue green algae Hyella caespitosa Bornet et Flahault, H. gigas Lucas et Golubic...

Palts ja Peek seljatasid maksuameti / Lauri Linnamäe

Index Scriptorium Estoniae

Linnamäe, Lauri

2007-01-01

Riigikohtu otsus maksuameti edasikaebust mitte arutada ja jätta jõusse Tallinna ringkonnakohtu otsus võttis Tõnis Paltsult ja Toomas Peegilt maksupetturluse süüdistuse seoses sidefirma AS Levicomi müügiga Tele2 kontsernile. Lisatud: kas teate?

Screening of the Antimicrobial Activities of Some Plants Used ...

African Journals Online (AJOL)

... this study, the extracts were shown to be devoid of activity against Aspergillus flavus, A. niger, Trichophyton mentagrophyte and the clinical isolate of Candida albicans. Keywords: antibacterial activity, antifungal activity, Jasminum abyssinicum, Lagenaria siceraria, Solanecio gigas. Ethiopian Pharmaceutical Journal Vol.

Impact on bird fauna of a non-native oyster expanding into blue mussel beds in the Dutch Wadden Sea

NARCIS (Netherlands)

Waser, A.M.; Deuzeman, S.; wa Kangeri, A.K.; van Winden, E.; Postma, J.; De Boer, P.; Van der Meer, J.; Ens, B.J.

2016-01-01

Intertidal mussel beds are important for intertidal ecosystems, because they feature a high taxonomic diversityand abundance of benthic organisms and are important foraging grounds for many avian species. After the introductionof the Pacific oyster (Crassostrea gigas) into the EuropeanWadden

Late-Holocene dynamics of sea-surface temperature and terrestrial hydrology in southwestern Africa

NARCIS (Netherlands)

Granger, R.; Meadows, M.E.; Hahn, A.; Zabel, M.; Stuut, J-B W.; Herrmann, N.; Schefuß, E.

2018-01-01

Invasive parasites can spill over to new hosts in invaded ecosystems with often unpredictable trophic relationships in the newly arising parasite-host interactions. In European seas, the intestinal copepod Mytilicola orientalis was co-introduced with Pacific oysters (Magallana gigas) and spilled

Diatomáceas epilíticas de águas oligotróficas e ácidas do Sudeste do Brasil Epilithic diatoms from acidic and oligotrophic waters in Southeast Brazil

Directory of Open Access Journals (Sweden)

Luís Gustavo de Castro Canani

2011-03-01

Full Text Available Poucos estudos tem abordado a flora de diatomáceas de sistemas oligotróficos do Brasil. São apresentados os resultados da composição taxonômica e distribuição espacial e temporal de diatomáceas no rio do Salto, situado no Parque Estadual do Ibitipoca, Minas Gerais (21º40'-21º44'S e 43º52'-43º55'W. As águas desse rio possuem pH entre 4,2 e 5,5 e concentração de ortofosfato entre 1,37 e 10,98 µg.L-1. O estudo baseia-se na análise de 80 amostras coletadas em oito estações no leito rochoso do rio, em janeiro e julho de 2004, períodos de chuva e estiagem, respectivamente. Um total de 15 espécies e duas variedades taxonômicas, distribuídas em oito gêneros e oito famílias foram descritas e ilustradas, com destaque para o gênero Eunotia Ehrenberg. O estudo sobre diatomáceas bentônicas em ambientes lóticos é pioneiro no estado de Minas Gerais, sendo registradas 14 novas citações, das quais Fragilariforma stevensonii Metzeltin & Lange-Bertalot, Eunotia pirarucu Metzeltin & Lange Betalot, Nupela giluwensis Vyverman & Compère e Sellaphora blackfordensis Mann & Droop são primeiros registros para o Brasil.Few studies have been done on the diatom flora of acidic and oligotrophic environments from Brazil. We present the taxonomic composition and distribution of diatoms of Salto River, situated at Ibitipoca State Park, Minas Gerais (21º40'-21º44'S; 43º52'-43º55'W. The pH values ranged from 4.2 to 5.5 and orthophosphate was between 1.37 and 10.98 µg.L-1. The study is based on the analysis of 80 samples collected at eight stations in the rocky stream bed, in January and July 2004, rainy and dry seasons, respectively. A total of 15 species and two taxonomic varieties distributed in eight genera and eight families were described and illustrated, notably the Eunotia Ehrenberg genus. The study of benthic diatoms in lotic systems is pioneer in Minas Gerais state; 14 new records were recorded of which Fragilariforma stevensonii

Spillover but no spillback of two invasive parasitic copepods from invasive Pacific oysters (

NARCIS (Netherlands)

Goedknegt, M.A.; Schuster, A.-K.; Buschbaum, C.; Gergs, R.; Jung, A.; Luttikhuizen, P.C.; Van der Meer, J.; Troost, K.; Wegner, K.M.; Thieltges, D.W.

2017-01-01

Invasive species can cause indirect effects on native biota by modifying parasite-host interactions and disease occurrence in native species. This study investigated the role of the invasive Pacific oyster (Crassostrea gigas) in potential spillover (co-introduced parasites infect native hosts) and

Impact of the invasive parasitic copepod

NARCIS (Netherlands)

Goedknegt, M.A.; Bedolfe; Drent, J.; van der Meer, J.; Thieltges, D.W.

2018-01-01

Invasive species can indirectly affect native species by modifying parasite–host dynamics and disease occurrence. This scenario applies to European coastal waters where the invasive Pacific oyster (Magallana gigas) co-introduced the parasitic copepod Mytilicola orientalis that spills

Short Communication Confirmed identification of gymnodimine in ...

African Journals Online (AJOL)

Mussels Choromytilus meridionalis and oysters Crassostrea gigas were suspended from a mooring off Lambert's Bay, South Africa, to study the kinetics of lipophilic phycotoxin accumulation and detoxification. The shellfish were subsequently harvested daily over approximately three weeks and analysed for lipophilic ...

Impact on bird fauna of a non-native oyster expanding into blue mussel beds in the Dutch Wadden Sea

NARCIS (Netherlands)

Waser, A.M.; Deuzeman, S.; wa Kangeri, A.K.; van Winden, E.; Postma, J.; de Boer, Peter; van der Meer, J.; Ens, B.J.

2016-01-01

Intertidal mussel beds are important for intertidal ecosystems, because they feature a high taxonomic diversity and abundance of benthic organisms and are important foraging grounds for many avian species. After the introduction of the Pacific oyster (Crassostrea gigas) into the European Wadden Sea,

Impact on bird fauna of a non-native oyster expanding into blue mussel beds in the Dutch Wadden Sea

NARCIS (Netherlands)

Waser, Andreas M.; Deuzeman, Symen; Kangeri, Arno K.W.; Winden, van Erik; Postma, Jelle; Boer, de Peter; Meer, van der Jaap; Ens, Bruno J.

2016-01-01

Intertidal mussel beds are important for intertidal ecosystems, because they feature a high taxonomic diversity and abundance of benthic organisms and are important foraging grounds for many avian species. After the introduction of the Pacific oyster (Crassostrea gigas) into the European Wadden

Can bivalve veligers escape feeding currents of adult bivalves?

NARCIS (Netherlands)

Troost, K.; Veldhuizen, R.; Stamhuis, E.J.; Wolff, W.J.

2008-01-01

While the stock of introduced Pacific oysters (Crassostrea gigas) increased in the Oosterschelde estuary (SW Netherlands), so did the filtration pressure of all bivalve species together. In the same period, stocks of native bivalves declined slightly. The expansion of Pacific oysters in Dutch

Dicty_cDB: Contig-U16011-1 [Dicty_cDB

Lifescience Database Archive (English)

Full Text Available J669288 |pid:none) Crassostrea gigas isolate I_8 acti... 224 1e-59 EU128481_1( EU128481 |pid:none) Tanichthys albonube... 224 1e-59 EU128482_1( EU128482 |pid:none) Tanichthys albonubes beta-actin ge...

Name changes for Malesian species of Chionanthus (Oleaceae)

NARCIS (Netherlands)

Kiew, Ruth

1998-01-01

New combinations under Chionanthus L. are made for Linociera beccarii, L. brassii, L. gigas, L. clementis, L. hahlii, L. kajewskii, L. nitida, L. remotinervia, L. riparia, L. rupicola, L. sessiliflora L. salicifolia, and L. stenura. Linociera cumingiana is synonymous with C. ramiflorus, L.

A Parallel Multigrid Solver for Viscous Flows on Anisotropic Structured Grids

Science.gov (United States)

Prieto, Manuel; Montero, Ruben S.; Llorente, Ignacio M.; Bushnell, Dennis M. (Technical Monitor)

2001-01-01

This paper presents an efficient parallel multigrid solver for speeding up the computation of a 3-D model that treats the flow of a viscous fluid over a flat plate. The main interest of this simulation lies in exhibiting some basic difficulties that prevent optimal multigrid efficiencies from being achieved. As the computing platform, we have used Coral, a Beowulf-class system based on Intel Pentium processors and equipped with GigaNet cLAN and switched Fast Ethernet networks. Our study not only examines the scalability of the solver but also includes a performance evaluation of Coral where the investigated solver has been used to compare several of its design choices, namely, the interconnection network (GigaNet versus switched Fast-Ethernet) and the node configuration (dual nodes versus single nodes). As a reference, the performance results have been compared with those obtained with the NAS-MG benchmark.

Ecotoxicological evaluation of industrial port of Venice (Italy) sediment samples after a decontamination treatment.

Science.gov (United States)

Libralato, Giovanni; Losso, Chiara; Arizzi Novelli, Alessandra; Citron, Marta; Della Sala, Stefano; Zanotto, Emanuele; Cepak, Franka; Volpi Ghirardini, Annamaria

2008-12-01

This work assesses the ecotoxicological effects of polluted sediment after a decontamination treatment process using a new sediment washing technique. Sediment samples were collected from four sites in Marghera Port industrial channels (Venice, Italy). Ecotoxicological evaluations were performed with Vibrio fischeri and Crassostrea gigas bioassays. Whole sediment and elutriate were deemed as the most suitable environmental matrices for this study. Toxicity scores developed in the Lagoon of Venice for V. fischeri on whole sediment and for C. gigas on elutriate were considered for the final ranking of samples. Ecotoxicological results showed that the treated sediment samples presented both acute and sub-chronic toxicities, which were mainly attributed to the presence of some remaining chemicals such as metals and polyaromatic hydrocarbons. The acute toxicity ranged from low to medium, while the sub-chronic one from absent to very high, suggesting that treated sediments could not be reused in direct contact with seawater.