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Sample records for pine functional analysis

  1. Screening and Functional Analysis of the Peroxiredoxin Specifically Expressed in Bursaphelenchus xylophilus—The Causative Agent of Pine Wilt Disease

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    Han-Yu Fu

    2014-06-01

    Full Text Available The pine wood nematode, Bursaphelenchus xylophilus, is the causal agent of pine wilt disease. Accurately differentiating B. xylophilus from other nematodes species, especially its related species B. mucronatus, is important for pine wood nematode detection. Thus, we attempted to identify a specific protein in the pine wood nematode using proteomics technology. Here, we compared the proteomes of B. xylophilus and B. mucronatus using Two-dimensional gel electrophoresis (2-DE and matrix-assisted laser desorption/ionization -time-of-flight/time-of-flight (MALDI-TOF/TOF-MS technologies. In total, 15 highly expressed proteins were identified in B. xylophilus compared with B. mucronatus. Subsequently, the specificity of the proteins identified was confirmed by PCR using the genomic DNA of other nematode species. Finally, a gene encoding a specific protein (Bx-Prx was obtained. This gene was cloned and expressed in E. coli. The in situ hybridisation pattern of Bx-Prx showed that it was expressed strongly in the tail of B. xylophilus. RNAi was used to assess the function of Bx-Prx, the results indicated that the gene was associated with the reproduction and pathogenicity of B. xylophilus. This discovery provides fundamental information for identifying B. xylophilus via a molecular approach. Moreover, the purified recombinant protein has potential as a candidate diagnostic antigen of pine wilt disease, which may lead to a new immunological detection method for the pine wood nematode.

  2. Accelerated Stem Growth Rates and Improved Fiber Properties of Loblolly Pine: Functional Analysis Of CyclinD from Pinus taeda

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    Dr. John Cairney, School of Biology and Institute of Paper Science and Technology @ Georgia Tech, Georgia Institute of Technology; Dr. Gary Peter, University of Florida; Dr. Ulrika Egertsdotter, Dept. of Forestry, Virgina Tech; Dr. Armin Wagner, New Zealand Forest Research Institute Ltd. (Scion Research.)

    2005-11-30

    A sustained supply of low-cost, high quality raw materials is essential for the future success of the U.S. forest products industry. To maximize stem (trunk) growth, a fundamental understanding of the molecular mechanisms that regulate cell divisions within the cambial meristem is essential. We hypothesize that auxin levels within the cambial meristem regulate cyclin gene expression and this in turn controls cell cycle progression as occurs in all eukaryotic cells. Work with model plant species has shown that ectopic overexpression of cyclins promotes cell division thereby increasing root growth > five times. We intended to test whether ectopic overexpression of cambial cyclins in the cambial zone of loblolly pine also promotes cell division rates that enhance stem growth rates. Results generated in model annual angiosperm systems cannot be reliably extrapolated to perennial gymnosperms, thus while the generation and development of transgenic pine is time consuming, this is the necessary approach for meaningful data. We succeeded in isolating a cyclin D gene and Clustal analysis to the Arabidopsis cyclin D gene family indicates that it is more closely related to cyclin D2 than D1 or D3 Using this gene as a probe we observed a small stimulation of cyclin D expression in somatic embryo culture upon addition of auxin. We hypothesized that trees with more cells in the vascular cambial and expansion zones will have higher cyclin mRNA levels. We demonstrated that in trees under compressive stress where the rates of cambial divisions are increased on the underside of the stem relative to the top or opposite side, there was a 20 fold increase in the level of PtcyclinD1 mRNA on the compressed side of the stem relative to the opposite. This suggests that higher secondary growth rates correlate with PtcyclinD1 expression. We showed that larger diameter trees show more growth during each year and that the increased growth in loblolly pine trees correlates with more cell

  3. Regeneration of different plant functional types in a Masson pine forest following pine wilt disease.

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    Guang Hu

    Full Text Available Pine wilt disease is a severe threat to the native pine forests in East Asia. Understanding the natural regeneration of the forests disturbed by pine wilt disease is thus critical for the conservation of biodiversity in this realm. We studied the dynamics of composition and structure within different plant functional types (PFTs in Masson pine forests affected by pine wilt disease (PWD. Based on plant traits, all species were assigned to four PFTs: evergreen woody species (PFT1, deciduous woody species (PFT2, herbs (PFT3, and ferns (PFT4. We analyzed the changes in these PFTs during the initial disturbance period and during post-disturbance regeneration. The species richness, abundance and basal area, as well as life-stage structure of the PFTs changed differently after pine wilt disease. The direction of plant community regeneration depended on the differential response of the PFTs. PFT1, which has a higher tolerance to disturbances, became dominant during the post-disturbance regeneration, and a young evergreen-broad-leaved forest developed quickly after PWD. Results also indicated that the impacts of PWD were dampened by the feedbacks between PFTs and the microclimate, in which PFT4 played an important ecological role. In conclusion, we propose management at the functional type level instead of at the population level as a promising approach in ecological restoration and biodiversity conservation.

  4. Biomass functions for young scots pine-dominated forest

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    Ahnlund Ulvcrona, K. (Vindeln Experimental Forests, Svartberet Research Station, Swedish Univ. of Agricultural Science, Vindeln (Sweden)), e-mail: Kristina.ulvcrona@esf.slu.se; Nilsson, U. (Southern Swedish Forest Research centre, Swedish Univ. of Agricultural Science, Alnarp (Sweden)); Lundmark, T. (Forest Ecology and Management, Swedish Univ. of Agricultural Science, Umeaa (Sweden))

    2010-07-15

    The aim of this study was to develop predictive biomass functions for young stands of Scots pine-dominated forests in northern Sweden. Above ground biomass was destructively sampled, and biomass functions for all tree fractions (e.g. stem including bark, branch and foliage) were developed, based on independent variables. Functions to estimate dry weight of the whole tree were also developed. No significant regressions could be found for the dead branch fraction. DBH for sampled trees in this study was in the range of 11 - 136 mm (Pinus sylvestris), 10 - 121 mm (Picea abies L. Karst) and 9 - 113 mm (Betula spp.)

  5. Analysis on enzymatic browning in pine needles

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    Kong, K.H.; Park, H.J.; Choi, S.S.; Cho, S.H. [Chung-Ang University, Seoul (Korea); Kim, Y.T. [Aoyama Gakuin University, Tokyo (Japan)

    1999-06-01

    Tyrosinases are related to the enzymatic browning of plants and attract the major scientific interest for the prevention of it. Three tyrosinase isozymes (P{sub 1}, P{sub 2} and P{sub 3}) from pine needles were purified to homogeneity and characterized the factors that affect their activities. The L-ascorbic acid and {beta}-mercaptoethanol notably inhibited the enzymatic activities of the three isozymes. The sodium diethyldithiocarbamate was a competitive inhibitor of isozymes with the K{sub i} values of P{sub 1}(0.30 mM), P{sub 2}(0.015 mM) and P{sub 3}(0.019 mM), respectively. Their enzyme activities were however, increased by the addition of most metal ions. The optimum pH for the three isozymes was 9.0{approx}9.5 and the optimum temperatures ranged from 55 to 60{sup o} C using L-DOPA as substrate. 15 refs., 3 figs., 2 tabs.

  6. Mathematical analysis of dynamic spread of Pine Wilt disease.

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    Dimitrijevic, D D; Bacic, J

    2013-01-01

    Since its detection in Portugal in 1999, the pinewood nematode Bursaphelenchus xylophilus (Steiner and Buhrer), a causal agent of Pine Wilt Disease, represents a threat to European forestry. Significant amount of money has been spent on its monitoring and eradication. This paper presents mathematical analysis of spread of pine wilt disease using a set of partial differential equations with space (longitude and latitude) and time as parameters of estimated spread of disease. This methodology can be used to evaluate risk of various assumed entry points of disease and make defense plans in advance. In case of an already existing outbreak, it can be used to draw optimal line of defense and plan removal of trees. Optimization constraints are economic loss of removal of susceptible trees as well as budgetary constraints of workforce cost.

  7. Functional evaluation for effective compositions in seed oil of Korean pine

    Institute of Scientific and Technical Information of China (English)

    WANGZhen-yu; CHENXiao-qiang

    2004-01-01

    The effect of seed oil of Korean pine (Pinus koraiensis) on the rats' blood·fat and its anti·ageing function was studied for appraising the efficacy of the seed oil of Korean pine. Sixty experimental rats were randomly divided into 5 groups (half males and half females in each group) as normal control group, high fat diet control group, and three groups (Group 1 Group 2,Group 3) that were fed with feedstuff with the contents of the seed oil of 2.0g/(kg· d-1), 4.0g/(kg· d1) and 8.0g/(kg· d-1), respectively. The indexes such as superoxide dismutase (SOD), glutathione peroxidase (GSH-PX) and anti-oxidation capacity (AOC) were measured by Reagent Kit method. It was found that the seed oil of the Korean pine could reduce the content of triglyceride and improve SOD as well as GSH-PX activity in serum. These indexes of the rats in Group 2 fed with Korean pine seed oil of 4.0 g/(kg·d-1) reached the significant level and those of rats in Group 3 fed with the seed oil of 8.0 g/(kg·d-1) reached the extremely significant level. The results indicated the seed oil of Korean pine had function of regulating the level of blood-fat and anti-ageing.

  8. Mineral Analysis of Pine Nuts (Pinus spp. Grown in New Zealand

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    Leo P. Vanhanen

    2013-04-01

    Full Text Available Mineral analysis of seven Pinus species grown in different regions of New Zealand; Armand pine (Pinus armandii Franch, Swiss stone pine (Pinus cembra L., Mexican pinyon (Pinus cembroides Zucc. var. bicolor Little, Coulter pine (Pinus coulteri D. Don, Johann’s pine (Pinus johannis M.F. Robert, Italian stone pine (Pinus pinea L. and Torrey pine (Pinus torreyana Parry ex Carrière, was carried out using an inductively coupled plasma optical emission spectrophotometer (ICP-OES analysis. Fourteen different minerals (Al, B, Ca, Cr, Cu, Fe, K, Mg, Mn, Na, Ni, P, S and Zn were identified in all seven varieties, except that no Al or Na was found in Pinus coulteri D. Don. New Zealand grown pine nuts are a good source of Cu, Mg, Mn, P and Zn, meeting or exceeding the recommended RDI for these minerals (based on an intake of 50 g nuts/day while they supplied between 39%–89% of the New Zealand RDI for Fe. Compared to other commonly eaten tree-nuts New Zealand grown pine nuts are an excellent source of essential minerals.

  9. [Analysis of pine pollen by using FTIR, SEM and energy-dispersive X-ray analysis].

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    Wang, Ya-min; Wang, Hong-jie; Zhang, Zhuo-yong

    2005-11-01

    Infrared spectroscopy (IR), scanning electron microscope (SEM) and energy-dispersive X-ray analysis (EDX) were used to analyze nutrients in four pine pollen powder samples. The IR fingerprints showed that each of the samples, pinus massoniana, pinus yunnanensis, pinus tabulaeformis, and pinus densiflora, respectively had its own characteristic infrared spectrum. Based on the difference of the relative intensity of those characteristic absorption peaks, the IR fingerprints can be used for the identification of the four kinds of pine pollen samples. The broken pollen of pinus was more easily to release nutritional components for the distinct difference IR fingerprints of natural and broken masson pine pollen samples. As a result of SEM, four kinds of pollen grains were oblong or subspheroidal in distal face and proximal face. The exine sculpture of the four kinds of samples were granulous and almost the same, but there was some difference of the size of pollen grains. The main morphologic change of the broken pollen was that the air bags were separated from pollen particles, and part of the main body of pollen particles was broken. The energy-dispersive X-ray analysis results showed that eleven elements, including Mg, Se, Si, Sr, P, S, Cl, K, Ca, Mn, and Fe, existed and the highest content in pollen of pinus was K element. The contents of trace elements were different in different kinds of pollen of pinus. The element intensity in broken masson pine pollen was distinctlyhigher than that innatural masson pine pollen.

  10. Analysis of atmospheric ozone measurements over a pine forest

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    Lopez, A.; Fontan, J.; Minga, A.

    Vertical and horizontal profiles of ozone concentration have been measured within the atmospheric boundary layer over the pine forest located in the southwest of France (Landes Forest). Evidence for an ozone depletion in lower layers is obtained from the analysis of vertical profiles recorded at the end of the night. In terms of deposition at the upper canopy level, this corresponds to a disappearance rate ranging between 0.2 and 0.5 cm s -1. The horizontal profiles obtained at midday reveal that ozone vanishes at a rate of the order of 5 × 10 -5 ppb m -1 when air mass moving in the advection direction passes over the forested area. These results are consistent with those obtained by numeric simulation in the case of low emission rates of nitrogen oxides. On the basis of these measurements, the expression of the ozone budget within the atmospheric boundary layer is discussed and compared with the data obtained from the simulation study.

  11. Functional analysis

    CERN Document Server

    Kantorovich, L V

    1982-01-01

    Functional Analysis examines trends in functional analysis as a mathematical discipline and the ever-increasing role played by its techniques in applications. The theory of topological vector spaces is emphasized, along with the applications of functional analysis to applied analysis. Some topics of functional analysis connected with applications to mathematical economics and control theory are also discussed. Comprised of 18 chapters, this book begins with an introduction to the elements of the theory of topological spaces, the theory of metric spaces, and the theory of abstract measure space

  12. The Probability Density Functions to Diameter Distributions for Scots Pine Oriental Beech and Mixed Stands

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    Aydın Kahriman

    2011-11-01

    Full Text Available Determine the diameter distribution of a stand and its relations with stand ages, site index, density and mixture percentage is very important both biologically and economically. The Weibull with two parameters, Weibull with three parameters, Gamma with two parameters, Gamma with three parameters, Beta, Lognormal with two parameters, Lognormal with three parameters, Normal, Johnson SB probability density functions were used to determination of diameter distributions. This study aimed to compared based on performance of describing different diameter distribution and to describe the best successful function of diameter distributions. The data were obtaited from 162 temporary sample plots measured Scots pine and Oriental beech mixed stands in Black Sea Region. The results show that four parameter Johnson SB function for both scots pine and oriental beech is the best successful function to describe diameter distributions based on error index values calculated by difference between observed and predicted diameter distributions.

  13. Ground Spider Guilds and Functional Diversity in Native Pine Woodlands and Eucalyptus Plantations.

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    Corcuera, Pablo; Valverde, Pedro Luis; Jiménez, María Luisa; Ponce-Mendoza, Alejandro; De la Rosa, Gabriela; Nieto, Gisela

    2016-04-01

    Vegetation structure and floristics have a strong influence on the relative abundance of spider guilds and functional diversity of terrestrial arthropods. Human activities have transformed much of the temperate woodlands. The aim of this study was to test five predictions related to the guild distribution and functional diversity of the ground spider communities of Eucalyptus plantations and native pine woodlands in western Mexico. Spiders were collected every fortnight from September to November from 15 pitfalls positioned in each of the eight sites. We also assessed the cover of grasses, herbs, shrubs, and leaf litter in each site. We found that the abundances of ground hunters and sheet weavers between plantations and pine woodlands were different. Nevertheless, there was not a consistent difference between sites of each of the vegetation types. Most species of ground hunters, sheet web weavers, and many other hunters were associated with litter and the grass cover. Nonetheless, in some cases, species of different families belonging to the same guild responded to different variables. Wolf spiders were related to the grass Aristida stricta Micheaux, 1803, while the species of the other families of ground hunters were associated with leaf litter. One Eucalyptus plantation and one pine woodland had the highest functional diversity of all sites. These sites have a well developed litter and grass cover. Our study suggests that the abundance of litter and a high cover of grasses explain the occurrence of species with different traits, and these habitat components results in a high functional diversity.

  14. Antioxidant activity and analysis of proanthocyanidins from pine (Pinus densiflora) needles.

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    Park, Yong Soo; Jeon, Min Hee; Hwang, Hyun Jung; Park, Mi Ra; Lee, Sang-Hyeon; Kim, Sung Gu; Kim, Mihyang

    2011-08-01

    In this study, we evaluated the antioxidant activity of pine needle extracts prepared with hot water, ethanol, hexane, hot water-hexane (HWH), and hot water-ethanol (HWE), using the DPPH (1,1-diphenyl-2-picrylhydrazyl) radical method. The hot water extract possessed superior antioxidant activity than the other extracts. We also compared the antioxidant activity of pine needle extracts through ROS inhibition activity in a cellular system using MC3T3 E-1 cells. The hot water extract exhibited the lowest ROS production. The pattern of HPLC analysis of each extract indicated that the hot water extract contained the highest proanthocyanidin level. The pine needle hot-water extract was then isolated and fractionated with Sephadex LH-20 column chromatography to determine the major contributor to its antioxidant activity. The No.7 and 12 fractions had high antioxidant activities, that is, the highest contents of proanthocyanidins and catechins, respectively. These results indicate that the antioxidant activity of procyanidins from the hot water extract of pine needles is positively related to not only polymeric proanthocyanidins but also to monomeric catechins. Moreover, the antioxidant activity of the pine needle hot water extract was similar to well-known antioxidants, such as vitamin C. This suggests that pine needle proanthocyanidins and catechins might be of interest for use as alternative antioxidants.

  15. Stratification criteria to fit taper functions on pine boles

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    Hassan Camil David

    2014-09-01

    Full Text Available This paper aimed to evaluate the accuracy of taper functions fitted with and without stratification on Pinus sp. trees. Three strata were allocated using diameter at 1.3 m above the ground, artificial form factor and Schiffel’s form quotient as stratification criteria. Schöepfer, Kozak et al. Hradetzky, Garcia et al., Ormerod and Demaerchalk taper functions were tested and the one which best fitted to the total population was selected by statistics standard error of estimate in percentage (syx%, adjusted coefficient of determination (R²aj. and residual scatterplots. After this, the selected function was fitted with data stratified and the gain of accuracy was evaluated by two statistical methods. As results, Hradetzky’s function adjusted better when compared to the others. Equations obtained for the total population and for strata are statistically different. Stratification by form factor and by form quotient provide considerable reduction of errors, reaching up to 50%, however it was not observed expressive reduction for stratification by diameter at 1.3 above the ground. So, the stratification by form factor is recommended for fitting taper functions to boles of Pinus sp.

  16. NMR analysis of oils from pine nuts ( Pinus sibirica) and seeds of common pine ( Pinus silvestris L.)

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    Skakovskii, E. D.; Tychinskaya, L. Yu.; Gaidukevich, O. A.; Klyuev, A. Yu.; Kulakova, A. N.; Petlitskaya, N. M.; Rykove, S. V.

    2007-07-01

    We studied the fatty-acid composition of oils from pine nuts and seeds of common pine using PMR and 13C NMR and gas chromatography. We found that the main components of the glycerides are palmitic, stearic, oleic, linoleic, γ-linolenic, pinolenic, and cis-9-eicosenoic acids. The oils contain about 2% sn-1,2-diacylglycerides in addition to triglycerides.

  17. Understory plant communities and the functional distinction between savanna trees, forest trees, and pines

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    Veldman, Joseph W.; Mattingly, W. Brett; Brudvig, Lars A.

    2013-02-01

    Although savanna trees and forest trees are thought to represent distinct functional groups with different effects on ecosystem processes, few empirical studies have examined these effects. In particular, it remains unclear if savanna and forest trees differ in their ability to coexist with understory plants, which comprise the majority of plant diversity in most savannas. We used structural equation modeling (SEM) and data from 157 sites across three locations in the southeastern United States to understand the effects of broadleaf savanna trees, broadleaf forest trees, and pine trees on savanna understory plant communities. After accounting for underlying gradients in fire frequency and soil moisture, abundances (i.e., basal area and stem density) of forest trees and pines, but not savanna trees, were negatively correlated with the cover and density (i.e., local-scale species richness) of C4 graminoid species, a defining savanna understory functional group that is linked to ecosystem flammability. In analyses of the full understory community, abundances of trees from all functional groups were negatively correlated with species density and cover. For both the C4 and full communities, fire frequency promoted understory plants directly, and indirectly by limiting forest tree abundance. There was little indirect influence of fire on the understory mediated through savanna trees and pines, which are more fire tolerant than forest trees. We conclude that tree functional identity is an important factor that influences overstory tree relationships with savanna understory plant communities. In particular, distinct relationships between trees and C4 graminoids have implications for grass-tree coexistence and vegetation-fire feedbacks that maintain savanna environments and their associated understory plant diversity.

  18. Comparative Analysis of Pine Needles and Coal for Electricity Generation using Carbon Taxation and Emission Reductions

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    Dhaundiyal Alok

    2015-06-01

    Full Text Available Mitigating global climate change via emission control and taxation is promising for strengthening the economic benefits of bioenergy generation and utilization. This study examines the cost effectiveness of pine needles as an alternative fuel for off-grid electricity generation in India. We first examined the changes of prices in coal for electricity generation due to CO2 emission reductions and taxes using experimental data of gasification plants. The time value of money and depreciation scale were used to find out the real levellized cost of electricity generation of gasification plants. Then, the costs of electricity generation fuelled by pine needles and coal were estimated using the cost analysis method. Our results indicate that pine needles would have more competitive edge than coal if emission had taxed at about an emission tax INR 525.15 Mg-1 of CO2 (US$ 8.4, or higher would be needed for pine needles at a yield of 202.176 dry Mg hm-2 yr. The price of coal used for electricity generation would have significantly increased if global CO2 emission had abridged by 20% or more. However, pine needles were found a much better fuel source with an increasing yield of 5.05 Mg hm-2 yr (with respect to power generation and 2.335 Mg hm-2 yr (with respect to feedstock production.

  19. Biomass logistics analysis for large scale biofuel production: case study of loblolly pine and switchgrass.

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    Lu, Xiaoming; Withers, Mitch R; Seifkar, Navid; Field, Randall P; Barrett, Steven R H; Herzog, Howard J

    2015-05-01

    The objective of this study was to assess the costs, energy consumption and greenhouse gas (GHG) emissions throughout the biomass supply chain for large scale biofuel production. Two types of energy crop were considered, switchgrass and loblolly pine, as representative of herbaceous and woody biomass. A biomass logistics model has been developed to estimate the feedstock supply system from biomass production through transportation. Biomass in the form of woodchip, bale and pellet was investigated with road, railway and waterway transportation options. Our analysis indicated that the farm or forest gate cost is lowest for loblolly pine whole tree woodchip at $39.7/dry tonne and highest for switchgrass round bale at $72.3/dry tonne. Switchgrass farm gate GHG emissions is approximately 146kgCO2e/dry tonne, about 4 times higher than loblolly pine. The optimum biomass transportation mode and delivered form are determined by the tradeoff between fixed and variable costs for feedstock shipment.

  20. Canopy Defoliation has More Impact on Carbohydrate Availability than on Hydraulic Function in Declining Scots Pine Populations

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    Poyatos, R.; Aguadé, D.; Gómez, M.; Mencuccini, M.; Martínez-Vilalta, J.

    2013-12-01

    Drought-induced defoliation has recently been associated with depletion of carbohydrate reserves and increased mortality risk in Scots pine (Pinus sylvestris L.) at its dry limit. Are defoliated pines hydraulically impaired compared to non-defoliated pines? Moreover, how do defoliated pines cope with potentially lethal droughts, as compared to non-defoliated pines in the same population? In order to address these questions, we measured the seasonal dynamics of sap flow and needle water potentials (2010-2012), hydraulic function and non-structural carbohydrates (NSC) (2012) in healthy and defoliated pines in the Prades mountains (NE Spain). The summer drought was mild in 2010, intense in 2012 and extremely long in 2011. Defoliated Scots pines showed higher sap flow per unit leaf area during spring, but they were more sensitive to summer drought (Figure 1). This pattern was associated with a steeper decline in soil-to-leaf hydraulic conductance, which could not be explained by differences in branch vulnerability to embolism across defoliation classes. Accordingly, the native loss of xylem conductivity in branches, measured in 2012, remained similar across defoliation classes and reached >65% at the peak of the drought. However, a steeper vulnerability curve was observed for root xylem of defoliated pines. Xylem diameter variations (2011-2012) will be used to further investigate possible differences in the aboveground/belowground partitioning of hydraulic resistance across defoliation classes. NSC levels varied across tree organs (leaves>branches>roots>trunk) and strongly declined with drought. Defoliated pines displayed reduced NSC levels throughout the study period, despite enhanced water transport capacity and increased gas exchange rates during spring. Overall, the defoliated vs. healthy status seems to be more associated to differences in carbohydrate storage and dynamics than to hydraulic differences per se. However, starch conversion to soluble sugars during

  1. Southern pine beetle infestation probability mapping using weights of evidence analysis

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    Jason B. Grogan; David L. Kulhavy; James C. Kroll

    2010-01-01

    Weights of Evidence (WofE) spatial analysis was used to predict probability of southern pine beetle (Dendroctonus frontalis) (SPB) infestation in Angelina, Nacogdoches, San Augustine and Shelby Co., TX. Thematic data derived from Landsat imagery (1974–2002 Landsat 1–7) were used. Data layers included: forest covertype, forest age, forest patch size...

  2. Metagenomic analysis of the viral flora of pine marten and european badger feces

    NARCIS (Netherlands)

    J.M.A. van den Brand (Judith); J.L. van Leeuwen (Johan); C.M.E. Schapendonk (Claudia); J.H. Simon (James); B.L. Haagmans (Bart); A.D.M.E. Osterhaus (Albert); S.L. Smits (Saskia)

    2012-01-01

    textabstractA thorough understanding of the diversity of viruses in wildlife provides epidemiological baseline information about potential pathogens. Metagenomic analysis of the enteric viral flora revealed a new anellovirus and bocavirus species in pine martens and a new circovirus-like virus and g

  3. (Not Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism

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    Fourcaud Thierry

    2010-10-01

    Full Text Available Abstract Background Plants are subjected to continuous stimuli from the environment and have evolved an ability to respond through various growth and development processes. Phototropism and gravitropism responses enable the plant to reorient with regard to light and gravity. Results We quantified the speed of maritime pine seedlings to reorient with regard to light and gravity over 22 days. Seedlings were inclined at 15, 30 and 45 degrees with vertical plants as controls. A lateral light source illuminated the plants and stem movement over time was recorded. Depending on the initial angle of stem lean, the apical response to the lateral light source differed. In control and 15° inclined plants, the apex turned directly towards the light source after only 2 h. In plants inclined at 30° and 45°, the apex first reoriented in the vertical plane after 2 h, then turned towards the light source after 24 h. Two-dimensional gel electrophoresis coupled with mass spectrometry was then used to describe the molecular response of stem bending involved in photo- and gravi-tropism after 22 hr and 8 days of treatment. A total of 486 spots were quantitatively analyzed using image analysis software. Significant changes were determined in the protein accumulation of 68 protein spots. Early response gravitropic associated proteins were identified, which are known to function in energy related and primary metabolism. A group of thirty eight proteins were found to be involved in primary metabolism and energy related metabolic pathways. Degradation of Rubisco was implicated in some protein shifts. Conclusions Our study demonstrates a rapid gravitropic response in apices of maritime pine seedlings inclined >30°. Little or no response was observed at the stem bases of the same plants. The primary gravitropic response is concomitant with a modification of the proteome, consisting of an over accumulation of energy and metabolism associated proteins, which may allow the

  4. Summary of preliminary step-trend analysis from the Interagency Whitebark Pine Long-termMonitoring Program—2004-2013

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    Legg, Kristin; Shanahan, Erin; Daley, Rob; Irvine, Kathryn M.

    2014-01-01

    In mixed and dominant stands, whitebark pine (Pinus albicaulis) occurs in over two million acres within the six national forests and two national parks that comprise the Greater Yellowstone Ecosystem (GYE). Currently, whitebark pine, an ecologically important species, is impacted by multiple ecological disturbances; white pine blister rust (Cronartium ribicola), mountain pine beetle (Dendroctonus ponderosae), wildfire, and climate change all pose significant threats to the persistence of whitebark pine populations. Substantial declines in whitebark pine populations have been documented throughout its range.Under the auspices of the Greater Yellowstone Coordinating Committee (GYCC), several agencies began a collaborative, long-term monitoring program to track and document the status of whitebark pine across the GYE. This alliance resulted in the formation of the Greater Yellowstone Whitebark Pine Monitoring Working Group (GYWPMWG), which consists of representatives from the U.S. Forest Service (USFS), National Park Service (NPS), U.S. Geological Survey (USGS), and Montana State University (MSU). This groundbased monitoring program was initiated in 2004 and follows a peer-reviewed protocol (GYWPMWG 2011). The program is led by the Greater Yellowstone Inventory and Monitoring Network (GRYN) of the National Park Service in coordination with multiple agencies. More information about this monitoring effort is available at: http://science. nature.nps.gov/im/units/gryn/monitor/whitebark_pine.cfm. The purpose of this report is to provide a draft summary of the first step-trend analysis for the interagency, long-term monitoring of whitebark pine health to the Interagency Grizzly Bear Study Team (IGBST) as part of a synthesis of the state of whitebark pine in the GYE. Due to the various stages of the analyses and reporting, this is the most efficient way to provide these results to the IGBST.

  5. Using stable isotopes and functional wood anatomy to identify underlying mechanisms of drought tolerance in different provenances of lodgepole pine

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    Isaac-Renton, Miriam; Montwé, David; Hamann, Andreas; Spiecker, Heinrich; Cherubini, Paolo; Treydte, Kerstin

    2016-04-01

    Choosing drought-tolerant seed sources for reforestation may help adapt forests to climate change. By combining dendroecological growth analysis with a long-term provenance trial, we assessed growth and drought tolerance of different populations of a wide-ranging conifer, lodgepole pine (Pinus contorta). This experimental design simulated a climate warming scenario through southward seed transfer, and an exceptional drought also occurred in 2002. We felled over 500 trees, representing 23 seed sources, which were grown for 32 years at three warm, dry sites in southern British Columbia, Canada. Northern populations showed poor growth and drought tolerance. These seed sources therefore appear to be especially at risk under climate change. Before recommending assisted migration of southern seeds towards the north, however, it is important to understand the physiological mechanisms underlying these responses. We combine functional wood anatomy with a dual-isotope approach to evaluate these mechanisms to drought response.

  6. Numerical and functional responses of forest bats to a major insect pest in pine plantations.

    Directory of Open Access Journals (Sweden)

    Yohan Charbonnier

    Full Text Available Global change is expected to modify the frequency and magnitude of defoliating insect outbreaks in forest ecosystems. Bats are increasingly acknowledged as effective biocontrol agents for pest insect populations. However, a better understanding is required of whether and how bat communities contribute to the resilience of forests to man- and climate-driven biotic disturbances.We studied the responses of forest insectivorous bats to a major pine defoliator, the pine processionary moth Thaumetopoea pityocampa, which is currently expanding its range in response to global warming [corrected]. We used pheromone traps and ultrasound bat recorders to estimate the abundance and activity of moths and predatory bats along the edge of infested pine stands. We used synthetic pheromone to evaluate the effects of experimentally increased moth availability on bat foraging activity. We also evaluated the top-down regulation of moth population by estimating T. pityocampa larval colonies abundance on the same edges the following winter. We observed a close spatio-temporal matching between emergent moths and foraging bats, with bat activity significantly increasing with moth abundance. The foraging activity of some bat species was significantly higher near pheromone lures, i.e. in areas of expected increased prey availability. Furthermore moth reproductive success significantly decreased with increasing bat activity during the flight period of adult moths. These findings suggest that bats, at least in condition of low prey density, exhibit numerical and functional responses to a specific and abundant prey, which may ultimately result in an effective top-down regulation of the population of the prey. These observations are consistent with bats being useful agents for the biocontrol of insect pest populations in plantation forests.

  7. Numerical and functional responses of forest bats to a major insect pest in pine plantations.

    Science.gov (United States)

    Charbonnier, Yohan; Barbaro, Luc; Theillout, Amandine; Jactel, Hervé

    2014-01-01

    Global change is expected to modify the frequency and magnitude of defoliating insect outbreaks in forest ecosystems. Bats are increasingly acknowledged as effective biocontrol agents for pest insect populations. However, a better understanding is required of whether and how bat communities contribute to the resilience of forests to man- and climate-driven biotic disturbances.We studied the responses of forest insectivorous bats to a major pine defoliator, the pine processionary moth Thaumetopoea pityocampa, which is currently expanding its range in response to global warming [corrected]. We used pheromone traps and ultrasound bat recorders to estimate the abundance and activity of moths and predatory bats along the edge of infested pine stands. We used synthetic pheromone to evaluate the effects of experimentally increased moth availability on bat foraging activity. We also evaluated the top-down regulation of moth population by estimating T. pityocampa larval colonies abundance on the same edges the following winter. We observed a close spatio-temporal matching between emergent moths and foraging bats, with bat activity significantly increasing with moth abundance. The foraging activity of some bat species was significantly higher near pheromone lures, i.e. in areas of expected increased prey availability. Furthermore moth reproductive success significantly decreased with increasing bat activity during the flight period of adult moths. These findings suggest that bats, at least in condition of low prey density, exhibit numerical and functional responses to a specific and abundant prey, which may ultimately result in an effective top-down regulation of the population of the prey. These observations are consistent with bats being useful agents for the biocontrol of insect pest populations in plantation forests.

  8. Micropropagation of loblolly pine by somatic organogenesis and RAPD analysis of regenerated plantlets

    Institute of Scientific and Technical Information of China (English)

    唐巍

    2000-01-01

    Organogenesis was induced in callus derived from mature zygotic embryos of six families (J-56, S-1003, E-22, E-311, E-440, and Mc) of loblolly pine (Pinus taeda L.) within 24 weeks of culture. Elongation of adventitious buds was achieved on TE medium supplemented with 0.5 mg·L-1 indole-3-butyric acid (IBA) and 1 mg/l 6-benzyladenine (BA). The most suitable medium for root formation proved to be TE medium supplemented with 0.5 mg·L-1 IBA, 2 mg·L-1 BA , and 0.5 mg/l gibberellic acid (GA3). 169 regenerated plantlets were transferred to a perlite∶peatmoss∶vermiculite (1:1:1) soil mixture, and 98 plantlets survived in the field. Total DNA was extracted from the needles of the regenerated plantlets of the six families of loblolly pine. Analysis of random amplified polymorphic DNA (RAPD) using 20 arbitrary oligonucleotide 10-mers, show that amplification products were monomorphic for all the plantlets of family J-56, S-1003, E-22, E-311, E-440, and Mc of loblolly pine. These results suggested that organogenesis can be used for clonal micropropagation of some families of loblolly pine.

  9. Determination of terpenoid content in pine by organic solvent extraction and fast-GC analysis

    Directory of Open Access Journals (Sweden)

    Anne Elizabeth Harman-Ware

    2016-01-01

    Full Text Available Terpenoids, naturally occurring compounds derived from isoprene units present in pine oleoresin, are a valuable source of chemicals used in solvents, fragrances, flavors and have shown potential use as a biofuel. This paper describes a method to extract and analyze the terpenoids present in loblolly pine saplings and pine lighter wood. Various extraction solvents were tested over different times and temperatures. Samples were analyzed by pyrolysis-molecular beam mass spectrometry before and after extractions to monitor the extraction efficiency. The pyrolysis studies indicated that the optimal extraction method used a 1:1 hexane/acetone solvent system at 22°C for 1 h. Extracts from the hexane/acetone experiments were analyzed using a low thermal mass modular accelerated column heater for fast-GC/FID analysis. The most abundant terpenoids from the pine samples were quantified, using standard curves, and included the monoterpenes, α- and β- pinene, camphene and δ-carene. Sesquiterpenes analyzed included caryophyllene, humulene and α-bisabolene. Diterpenoid resin acids were quantified in derivatized extractions, including pimaric, isopimaric, levopimaric, palustric, dehydroabietic, abietic and neoabietic acids.

  10. Functional analysis

    CERN Document Server

    Kesavan, S

    2009-01-01

    The material presented in this book is suited for a first course in Functional Analysis which can be followed by Masters students. While covering all the standard material expected of such a course, efforts have been made to illustrate the use of various theorems via examples taken from differential equations and the calculus of variations, either through brief sections or through exercises. In fact, this book will be particularly useful for students who would like to pursue a research career in the applications of mathematics. The book includes a chapter on weak and weak topologies and their applications to the notions of reflexivity, separability and uniform convexity. The chapter on the Lebesgue spaces also presents the theory of one of the simplest classes of Sobolev spaces. The book includes a chapter on compact operators and the spectral theory for compact self-adjoint operators on a Hilbert space. Each chapter has large collection of exercises at the end. These illustrate the results of the text, show ...

  11. Interactions of coal gangue and pine sawdust during combustion of their blends studied using differential thermogravimetric analysis.

    Science.gov (United States)

    Zhang, Yuanyuan; Zhang, Zhezi; Zhu, Mingming; Cheng, Fangqin; Zhang, Dongke

    2016-08-01

    The interactions between coal gangue and pine sawdust during the combustion process were studied using thermogravimetric analysis. The effect of the blending ratio, oxygen concentration and heating rate on the weight loss (TG) and differential thermogravimetric (TGA) profiles was examined. The TG and DTG curves of the blends were not additives of those of the individual materials, suggesting that interactions between coal gangue and pine sawdust had occurred during the combustion, especially in the temperature range of 400-600°C. Kinetic analysis confirmed that the combustion of coal gangue, pine sawdust and their blends was chemical reaction controlled. Further analysis revealed that the interactions between coal gangue and pine sawdust were primarily due to thermal effects rather than structural changes, with the thermal inertia of coal gangue dominating over the behaviour of the blends. The interactions decreased with decreasing the coal gangue ratio in the blend, oxygen concentration and heating rate.

  12. Analysis of xylem formation in pine by cDNA sequencing

    Science.gov (United States)

    Allona, I.; Quinn, M.; Shoop, E.; Swope, K.; St Cyr, S.; Carlis, J.; Riedl, J.; Retzel, E.; Campbell, M. M.; Sederoff, R.; hide

    1998-01-01

    Secondary xylem (wood) formation is likely to involve some genes expressed rarely or not at all in herbaceous plants. Moreover, environmental and developmental stimuli influence secondary xylem differentiation, producing morphological and chemical changes in wood. To increase our understanding of xylem formation, and to provide material for comparative analysis of gymnosperm and angiosperm sequences, ESTs were obtained from immature xylem of loblolly pine (Pinus taeda L.). A total of 1,097 single-pass sequences were obtained from 5' ends of cDNAs made from gravistimulated tissue from bent trees. Cluster analysis detected 107 groups of similar sequences, ranging in size from 2 to 20 sequences. A total of 361 sequences fell into these groups, whereas 736 sequences were unique. About 55% of the pine EST sequences show similarity to previously described sequences in public databases. About 10% of the recognized genes encode factors involved in cell wall formation. Sequences similar to cell wall proteins, most known lignin biosynthetic enzymes, and several enzymes of carbohydrate metabolism were found. A number of putative regulatory proteins also are represented. Expression patterns of several of these genes were studied in various tissues and organs of pine. Sequencing novel genes expressed during xylem formation will provide a powerful means of identifying mechanisms controlling this important differentiation pathway.

  13. Twenty-four years after theYellowstone Fires: Are postfire lodgepole pine stands converging in structure and function?

    Science.gov (United States)

    Turner, Monica G; Whitby, Timothy G; Tinker, Daniel B; Romme, William H

    2016-05-01

    Disturbance and succession have long been of interest in ecology, but how landscape patterns of ecosystem structure and function evolve following large disturbances is poorly understood. After nearly 25 years, lodgepole pine (Pinus contorta var. latifolia) forests that regenerated after the 1988 Yellowstone Fires (Wyoming, USA) offer a prime opportunity to track the fate of disturbance-created heterogeneity in stand structure and function in a wilderness setting. In 2012, we resampled 72 permanent plots to ask (1) How have postfire stand structure and function changed between 11 and 24 yr postfire, and what variables explain these patterns and changes? (2) How has landscape-level (among-stand) variability in postfire stand structure and function changed between 11 and 24 yr postfire? We expected to see evidence of convergence beginning to emerge, but also that initial postfire stem density would still determine trajectories of biomass accumulation. After 24 yr, postfire lodgepole pine density remained very high (mean = 21,738 stems/ha, range = 0-344,067 stems/ha). Stem density increased in most plots between 11 and 24 yr postfire, but declined sharply where 11-yr-postfire stem density was > 72,000 stems/ha. Stems were small in high-density stands, but stand-level lodgepole pine leaf area, foliage biomass, and live aboveground biomass increased over time and with increasing stem density. After 24 yr, mean annual lodgepole pine aboveground net primary production (ANPP) was high (mean = 5 Mg · ha⁻¹ · yr⁻¹, range = 0-16.5 Mg · ha⁻¹ · yr⁻¹). Among stands, lodgepole pine ANPP increased with stem density, which explained 69% of the variation; another 8% of the variation was explained by environmental covariates. Early patterns of postfire lodgepole pine regeneration, which were contingent on prefire serotiny and fire severity, remained the dominant driver of stand structure and function. We observed mechanisms that would lead to convergence in stem density

  14. Evolutionary aspects of functional and pseudogene members of the phytochrome gene family in Scots pine.

    Science.gov (United States)

    García-Gil, Maria Rosario

    2008-08-01

    According to the neutral theory of evolution, mutation and genetic drift are the only forces that shape unconstrained, neutral, gene evolution. Thus, pseudogenes (which often evolve neutrally) provide opportunities to obtain direct estimates of mutation rates that are not biased by selection, and gene families comprising functional and pseudogene members provide useful material for both estimating neutral mutation rates and identifying sites that appear to be under positive or negative selection pressures. Conifers could be very useful for such analyses since they have large and complex genomes. There is evidence that pseudogenes make significant contributions to the size and complexity of gene families in pines, although few studies have examined the composition and evolution of gene families in conifers. In this work, I examine the complexity and rates of mutation of the phytochrome gene family in Pinus sylvestris and show that it includes not only functional genes but also pseudogenes. As expected, the functional PHYO does not appear to have evolved neutrally, while phytochrome pseudogenes show signs of unconstrained evolution.

  15. Disentangling detoxification: gene expression analysis of feeding mountain pine beetle illuminates molecular-level host chemical defense detoxification mechanisms.

    Science.gov (United States)

    Robert, Jeanne A; Pitt, Caitlin; Bonnett, Tiffany R; Yuen, Macaire M S; Keeling, Christopher I; Bohlmann, Jörg; Huber, Dezene P W

    2013-01-01

    The mountain pine beetle, Dendroctonus ponderosae, is a native species of bark beetle (Coleoptera: Curculionidae) that caused unprecedented damage to the pine forests of British Columbia and other parts of western North America and is currently expanding its range into the boreal forests of central and eastern Canada and the USA. We conducted a large-scale gene expression analysis (RNA-seq) of mountain pine beetle male and female adults either starved or fed in male-female pairs for 24 hours on lodgepole pine host tree tissues. Our aim was to uncover transcripts involved in coniferophagous mountain pine beetle detoxification systems during early host colonization. Transcripts of members from several gene families significantly increased in insects fed on host tissue including: cytochromes P450, glucosyl transferases and glutathione S-transferases, esterases, and one ABC transporter. Other significantly increasing transcripts with potential roles in detoxification of host defenses included alcohol dehydrogenases and a group of unexpected transcripts whose products may play an, as yet, undiscovered role in host colonization by mountain pine beetle.

  16. Disentangling detoxification: gene expression analysis of feeding mountain pine beetle illuminates molecular-level host chemical defense detoxification mechanisms.

    Directory of Open Access Journals (Sweden)

    Jeanne A Robert

    Full Text Available The mountain pine beetle, Dendroctonus ponderosae, is a native species of bark beetle (Coleoptera: Curculionidae that caused unprecedented damage to the pine forests of British Columbia and other parts of western North America and is currently expanding its range into the boreal forests of central and eastern Canada and the USA. We conducted a large-scale gene expression analysis (RNA-seq of mountain pine beetle male and female adults either starved or fed in male-female pairs for 24 hours on lodgepole pine host tree tissues. Our aim was to uncover transcripts involved in coniferophagous mountain pine beetle detoxification systems during early host colonization. Transcripts of members from several gene families significantly increased in insects fed on host tissue including: cytochromes P450, glucosyl transferases and glutathione S-transferases, esterases, and one ABC transporter. Other significantly increasing transcripts with potential roles in detoxification of host defenses included alcohol dehydrogenases and a group of unexpected transcripts whose products may play an, as yet, undiscovered role in host colonization by mountain pine beetle.

  17. Functional genomics of mountain pine beetle (Dendroctonus ponderosae midguts and fat bodies

    Directory of Open Access Journals (Sweden)

    Bearfield Jeremy C

    2010-03-01

    Full Text Available Abstract Background The mountain pine beetle (Dendroctonus ponderosae is a significant coniferous forest pest in western North America. It relies on aggregation pheromones to colonize hosts. Its three major pheromone components, trans-verbenol, exo-brevicomin, and frontalin, are thought to arise via different metabolic pathways, but the enzymes involved have not been identified or characterized. We produced ESTs from male and female midguts and associated fat bodies and used custom oligonucleotide microarrays to study gene expression patterns and thereby made preliminary identification of pheromone-biosynthetic genes. Results Clones from two un-normalized cDNA libraries were directionally sequenced from the 5' end to yield 11,775 ESTs following sequence cleansing. The average read length was 550 nt. The ESTs clustered into 1,201 contigs and 2,833 singlets (4,034 tentative unique genes. The ESTs are broadly distributed among GO functional groups, suggesting they reflect a broad spectrum of the transcriptome. Among the most represented genes are representatives of sugar-digesting enzymes and members of an apparently Scolytid-specific gene family of unknown function. Custom NimbleGen 4-plex arrays representing the 4,034 tentative unique genes were queried with RNA from eleven different biological states representing larvae, pupae, and midguts and associated fat bodies of unfed or fed adults. Quantitative (Real-Time RT-PCR (qRT-PCR experiments confirmed that the microarray data accurately reflect expression levels in the different samples. Candidate genes encoding enzymes involved in terminal steps of biosynthetic pathways for exo-brevicomin and frontalin were tentatively identified. Conclusions These EST and microarray data are the first publicly-available functional genomics resources for this devastating forestry pest.

  18. Limber pine forests on the leading edge of white pine blister rust distribution in Northern Colorado

    Science.gov (United States)

    Jennifer G. Klutsch; Betsy A. Goodrich; Anna W. Schoettle

    2011-01-01

    The combined threats of the current mountain pine beetle (Dendroctonus ponderosae, MPB) epidemic with the imminent invasion of white pine blister rust (caused by the non-native fungus Cronartium ribicola, WPBR) in limber pine (Pinus flexilis) forests in northern Colorado threatens the limber pine's regeneration cycle and ecosystem function. Over one million...

  19. Perception of Pine Trees among Citizens of the Balearic Islands: Analysis and Description of Some Mistaken Ideas

    Science.gov (United States)

    Sureda-Negre, Jaume; Catalan-Fernandez, Albert; Comas-Forgas, Ruben; Fagan, Geoffrey; Llabres-Bernat, Antonia

    2011-01-01

    In this article, the authors analyze evidence regarding the dissemination of mistaken ideas concerning the presence and function of pine trees ("Pinus halepensis") in a Mediterranean archipelago: the Balearic Islands (Spain). The main errors concerning the natural vegetation that are disseminated among citizens by the forest management sector are…

  20. Analysis of inter - population variability Scots pine (Pinus sylvestris L. using morphometric markers

    Directory of Open Access Journals (Sweden)

    Lučić Aleksandar

    2012-01-01

    Full Text Available The aim of this study is analysis of inter-population variability of Scots pine (Pinus sylvestris L. using morphometric parameters of cones and seedlings originating from seven populations in Serbia.The analysis of 1960 cones and their seeds was performed as well as the analysis of morphometric parameters of seedlings (height and root neck diameter that were produced from this seed. Based on the obtained results the significant differences were noticed in the values of analyzed characters for each population separately. The biological similarity or distance regarding the analyzed characters showed a significant population differentiation. By presenting the preliminary knowledge on the genetic variability of the study populations, the reported results will contribute to better understanding of the significance of the analyzed characters in the population differentiation. [Projekat Ministarstva nauke Republike Srbije, br. TR 43007

  1. Functional feedbacks by dwarf mistletoe of pine into global climate change in a Yellowstone forest ecosystem

    Science.gov (United States)

    Cullings, K.; Hanely, J.

    2009-12-01

    Dwarf mistletoe is a defoliating, carbon-sink pathogen that significantly affects host physiology, and nutrient and water relations. This pathogen is forecast to increase in range and severity in response to global climate change due to effects on host tree physiology. Via impacts on host tree photosynthetic capacity, dwarf mistletoe could directly influence soil processes that that are responsible for the release one of the world’s greatest sources of atmospheric CO2. Despite the obvious ramifications for global climate change (GCC) and potential for feedbacks into the process, no studies have been put forth measuring effects on terrestrial ecology and carbon relations. In this study we investigated effects of dwarf mistletoe infection of pines in Yellowstone on soil fungal species and functional diversity, activities of soil enzymes actively involved in woody breakdown (hence having direct impact on carbon sequestration), and soil CO2 efflux. Despite the wealth of knowledge regarding primary effects of dwarf mistletoe on host physiological process, there is virtually no information regarding secondary effects, for example on the organisms that rely upon host photosynthate, and that in turn play pivotal roles in carbon cycling and terrestrial ecology. In this study we provide the first look at these impacts. Results: 1) direct genetic tests indicate significant decreases in soil fungal species diversity and richness; 2) culture-based methods (Fungilogs) indicate a significant increase in the number of carbon substrates utilized by soil fungi (see table); 3) direct measures of soil enzyme activity indicate significant increases in woody substrate breakdown (see table); 4) direct in situ measures of soil CO2 efflux indicate a doubling of CO2 flux from soils (P<0.02) in infected blocks. Together, these results indicate that there are tertiary and quaternary-level feedbacks into the GCC process that result from primary and secondary effects on disease distribution

  2. MALDI-TOF Analysis of Aleppo Pine (Pinus halepensis Bark Tannin

    Directory of Open Access Journals (Sweden)

    Soliman Abdalla

    2014-04-01

    Full Text Available Matrix-assisted laser desorption/ionisation time of flight (MALDI-TOF mass spectrometry is a suitable method for examining polyflavonoid tannin oligomers because it has the capability to determine aspects of their oligomeric structure and characteristics that are too difficult to determine by other techniques. For non-purified industrially extracted Aleppo pine polyflavonoid tannin, it was possible to determine by MALDI-TOF that: (i oligomers formed by catechin/epicatechin are present in tannin, as are mixed oligomer units with fisetinidin and robinetinidin units; the presence of flavonoid gallate and other structures was confirmed; (ii oligomers up to 12 to 13 repeating monoflavonoid units, in which the repeating unit is at 264 Da, have been confirmed; and (iii oligomers of the two types covalently linked to each other also occur. The presence of a small proportion of hydrolysable tannins by chemical analysis can also be explained by gallate residues attached to some of the flavonoid oligomers.

  3. Specific and functional diversity of endophytic bacteria from pine wood nematode Bursaphelenchus xylophilus with different virulence.

    Science.gov (United States)

    Wu, Xiao-Qin; Yuan, Wei-Min; Tian, Xiao-Jing; Fan, Ben; Fang, Xin; Ye, Jian-Ren; Ding, Xiao-Lei

    2013-01-01

    Pine wilt disease (PWD) caused by the pine wood nematode (PWN), Bursaphelenchus xylophilus, is one of the most devastating diseases of Pinus spp. The PWN was therefore listed as one of the most dangerous forest pests in China meriting quarantine. Virulence of the PWN is closely linked with the spread of PWD. However, main factors responsible for the virulence of PWNs are still unclear. Recently epiphytic bacteria carried by PWNs have drawn much attention. But little is known about the relationship between endophytic bacteria and virulence of B. xylophilus. In this research, virulence of ten strains of B. xylophilus from different geographical areas in six provinces of China and four pine species were tested with 2-year-old seedlings of Pinus thunbergii. Endophytic bacteria were isolated from PWNs with different virulence to investigate the relationship between the bacteria and PWN virulence. Meanwhile, the carbon metabolism of endophytic bacteria from highly and low virulent B. xylophilus was analyzed using Biolog plates (ECO). The results indicated that ten strains of PWNs showed a wide range of virulence. Simultaneously, endophytic bacteria were isolated from 90% of the B. xylophilus strains. The dominant endophytic bacteria in the nematodes were identified as species of Stenotrophomonas, Achromobacter, Ewingella, Leifsonia, Rhizobium, and Pseudomonas using molecular and biochemical methods. Moreover, S. maltophilia, and A. xylosoxidans subsp. xylosoxidans were the predominant strains. Most of the strains (80%) from P. massoniana contained either S. maltophilia, A. xylosoxidans, or both species. There was a difference between the abilities of the endophytic bacteria to utilize carbon sources. Endophytic bacteria from highly virulent B. xylophilus had a relatively high utilization rate of carbohydrate and carboxylic acids, while bacteria from low virulent B. xylophilus made better use of amino acids. In conclusion, endophytic bacteria widely exist in B. xylophilus

  4. Spatial Distibution of Mountain Pine Beetle Outbreaks in Relation to Climate and Stand Characteristics:A Dendroecological Analysis

    Institute of Scientific and Technical Information of China (English)

    Elizabeth M. Campbell; René I. Alfaro; Brad Hawkes

    2007-01-01

    Principal components analysis, followed by K-means cluster analysis, was used to detect variations in the timing and magnitude of Pinus contorta Dougl. ex Loud. growth releases attributed to mountain pine beetle outbreaks in 31 stands of central British Columbia. Four major growth release patterns were identified from 1970 to 2000.Variations in the timing of growth releases among clustered stands corresponded well to aerial survey data indicating the timing of beetle outbreaks in the study area. Redundancy analysis was used to determine how variations in the timing and magnitude of growth releases attributed to beetle outbreaks changed with variations in climate or stand conditions over the study area. The first RDA axis, which accounted for 39% of the variations in growth patterns among stands, was significantly (P<0.05) correlated with gradients in the percentage of pine in stands killed by mountain pine beetle, summer aridity, variation in summer precipitation, distance from initial infestation site, average pine age, and maximum August temperatures. The second RDA axis explained 6% of the variations and was significantly correlated with gradients in the beetle climate suitability index, extreme cold month temperatures, and site index. Comparisons of growth release patterns with aerial survey data and redundancy analyses indicated that dendrochronological techniques are useful for identifying mountain pine beetle outbreaks in central British Columbia, particularly among stands that had a density high enough to produce a growth release signal. Provided future studies account for interannual weather fluctuations, identification of growth increases due to stand thinning caused by beetle outbreaks will be useful for reconstructing the history of beetle outbreaks over much longer time periods.

  5. Bioenergy from Mountain Pine Beetle Timber and Forest Residuals: A Cost Analysis

    NARCIS (Netherlands)

    Niquidet, K.; Stennes, B.; Kooten, van G.C.

    2012-01-01

    In light of the large volumes of pine killed in the interior forests of British Columbia (BC) by the mountain pine beetle, many forest sector participants are keen to employ forest biomass as an energy source. To assess the feasibility of a wood biomass-fired power plant in the BC interior, it is ne

  6. User's guide: RPGrow$: a red pine growth and analysis spreadsheet for the Lake States.

    Science.gov (United States)

    Carol A. Hyldahl; Gerald H. Grossman

    1993-01-01

    Describes RPGrow$, a stand-level, interactive spreadsheet for projecting growth and yield and estimating financial returns of red pine plantations in the Lake States. This spreadsheet is based on published growth models for red pine. Financial analyses are based on discounted cash flow methods.

  7. Analysis of Scots pine climatypes growth dynamics in the provenance trial in Central Siberia

    Directory of Open Access Journals (Sweden)

    N. A. Kuzmina

    2017-04-01

    Full Text Available Differentiation of 83 Scots pine climatypes by height growth at the age of 37 years in the provenance trial was done. Three groups of climatypes were distinguished as: fast-growing, moderate-growing and slow-growing. The research at the age of 20–25 revealed 13 climatypes of 27 from the fast-growing group as candidates to breed-populations. These climatypes are from Krasnoyarsk Krai, Irkutsk Oblast, Kemerovo Oblast, Murmansk Oblast, Karelia, and the Republic of Komi. At the age of 37 years they confirm the status of perspective climatypes in height growth, survival, and resistance to fungal pathogens as it was noted earlier (Kuzmina, Kuzmin, 2007, 2008. The average height of trees of these climatypes exceeds control height by 32 %. The moderate-growing group consists of 18 climatypes, five of them are candidates to breed-populations. The intensity of their growth was reduced but average height is at the level of control average value. The third group has the largest number of climatypes. After the inventory in 2013 two climatypes previously marked as perspective were added into the third group. Last years the intensity of their growth was significantly reduced because of disease caused by cenangium dieback at the 22–24 years old. So the rank status of studied climatypes in different age periods is significantly changeable because of different reaction to ecological factors. The analysis of annual height increments growth confirms that objective conclusions about selection of perspective climatypes could be possible only after 25 years old of pine.

  8. Specific and Functional Diversity of Endophytic Bacteria from Pine Wood Nematode Bursaphelenchus Xylophilus with Different Virulence

    Directory of Open Access Journals (Sweden)

    Xiao-Qin Wu, Wei-Min Yuan, Xiao-Jing Tian, Ben Fan, Xin Fang, Jian-Ren Ye, Xiao-Lei Ding

    2013-01-01

    Full Text Available Pine wilt disease (PWD caused by the pine wood nematode (PWN, Bursaphelenchus xylophilus, is one of the most devastating diseases of Pinus spp. The PWN was therefore listed as one of the most dangerous forest pests in China meriting quarantine. Virulence of the PWN is closely linked with the spread of PWD. However, main factors responsible for the virulence of PWNs are still unclear. Recently epiphytic bacteria carried by PWNs have drawn much attention. But little is known about the relationship between endophytic bacteria and virulence of B. xylophilus. In this research, virulence of ten strains of B. xylophilus from different geographical areas in six provinces of China and four pine species were tested with 2-year-old seedlings of Pinus thunbergii. Endophytic bacteria were isolated from PWNs with different virulence to investigate the relationship between the bacteria and PWN virulence. Meanwhile, the carbon metabolism of endophytic bacteria from highly and low virulent B. xylophilus was analyzed using Biolog plates (ECO. The results indicated that ten strains of PWNs showed a wide range of virulence. Simultaneously, endophytic bacteria were isolated from 90% of the B. xylophilus strains. The dominant endophytic bacteria in the nematodes were identified as species of Stenotrophomonas, Achromobacter, Ewingella, Leifsonia, Rhizobium, and Pseudomonas using molecular and biochemical methods. Moreover, S. maltophilia, and A. xylosoxidans subsp. xylosoxidans were the predominant strains. Most of the strains (80% from P. massoniana contained either S. maltophilia, A. xylosoxidans, or both species. There was a difference between the abilities of the endophytic bacteria to utilize carbon sources. Endophytic bacteria from highly virulent B. xylophilus had a relatively high utilization rate of carbohydrate and carboxylic acids, while bacteria from low virulent B. xylophilus made better use of amino acids. In conclusion, endophytic bacteria widely exist

  9. Growth analysis of Scots pine (Pinus sylvestris L.) seedlings cultivated in a wide range of experimental conditions

    OpenAIRE

    Włodzimierz Żelawski; Andrzej Łotocki; Helena Morteczka; Teresa Przykorska-Żelawska; Wincenty Wrrześniewski

    2014-01-01

    The work of this laboratory for many years with Scots pine seedlings has allowed to collect quite unique information as to the accumulation and distribution of dry matter and the reaction of plants to various environmental influences. It seems worthwhile to publish the main experimental data almost in extenso because they may be used in future work for building mathematical models of plant growth. The presented experimental data enabled to discuss controversial points of quantitative analysis...

  10. Histological observations on needle colonization by Cronartium ribicola in susceptible and resistant seedlings of whitebark pine and limber pine

    Science.gov (United States)

    Jeffrey Stone; Anna Schoettle; Richard Sniezko; Angelia Kegley

    2011-01-01

    Resistance to white pine blister rust based on a hypersensitive response (HR) that is conferred by a dominant gene has been identified as functioning in needles of blister rust-resistant families of sugar pine, western white pine and southwestern white pine. The typical HR response displays a characteristic local necrosis at the site of infection in the needles during...

  11. Longitudinal analysis of annual height increment differentiation in Scots pine (Pinus sylvestris L. stands of different age classes

    Directory of Open Access Journals (Sweden)

    Zawieja Bogna

    2014-12-01

    Full Text Available In the study, the measurements of Scots pine height increments were used to compare the increments of pine trees of different age classes. All of the analyzed trees were growing in stands located on fresh mixed coniferous forest sites. The study concerned a 10-year period of growth of 8 tree age classes. Due to variation in climate conditions, all trees were studied over the same calendar period. Longitudinal analysis was used to compare different age classes of trees with reference to the increments in height. This procedure had not been previously used for such purpose. The results obtained did not confirm the hypothesis of parallel profiles implying that there existed differences in the growth of trees in various age groups.

  12. Bi-directional exchange of ammonia in a pine forest ecosystem - a model sensitivity analysis

    Science.gov (United States)

    Moravek, Alexander; Hrdina, Amy; Murphy, Jennifer

    2016-04-01

    Ammonia (NH3) is a key component in the global nitrogen cycle and of great importance for atmospheric chemistry, neutralizing atmospheric acids and leading to the formation of aerosol particles. For understanding the role of NH3 in both natural and anthropogenically influenced environments, the knowledge of processes regulating its exchange between ecosystems and the atmosphere is essential. A two-layer canopy compensation point model is used to evaluate the NH3 exchange in a pine forest in the Colorado Rocky Mountains. The net flux comprises the NH3 exchange of leaf stomata, its deposition to leaf cuticles and exchange with the forest ground. As key parameters the model uses in-canopy NH3 mixing ratios as well as leaf and soil emission potentials measured at the site in summer 2015. A sensitivity analysis is performed to evaluate the major exchange pathways as well as the model's constraints. In addition, the NH3 exchange is examined for an extended range of environmental conditions, such as droughts or varying concentrations of atmospheric pollutants, in order to investigate their influence on the overall net exchange.

  13. Outcrossing and paternity analysis of Pinus densiflora (Japanese red pine) by microsatellite polymorphism.

    Science.gov (United States)

    Lian, C; Miwa, M; Hogetsu, T

    2001-07-01

    This study employed microsatellite loci to analyse outcrossing rate and pollen dispersal in Japanese red pine (Pinus densiflora) in an isolated stand. The average offspring outcrossing rate for 29 cones was 0.955. Significant differences in outcrossing rates between offspring groups on individual branches that extended in different directions at different heights were not detected. Male parents of 874 offspring collected from the maternal tree were assessed by exclusion using polymorphisms at three microsatellite loci. Paternity analysis indicated that at least 31% of the offspring were fertilized by pollen from trees outside the stand. The average distance of pollen migration within the study stand was 68 m, with a maximum value of 325 m. There was excess mating with nearby P. densiflora trees, of which only a few were predominant pollen donors. In addition, a weakly directional bias in P. densiflora pollination was also detected in the study stand, suggesting that female strobili on a branch of the maternal tree were more easily fertilized by pollen from trees in that direction.

  14. Mapping Mountain Pine Beetle Mortality through Growth Trend Analysis of Time-Series Landsat Data

    Directory of Open Access Journals (Sweden)

    Lu Liang

    2014-06-01

    Full Text Available Disturbances are key processes in the carbon cycle of forests and other ecosystems. In recent decades, mountain pine beetle (MPB; Dendroctonus ponderosae outbreaks have become more frequent and extensive in western North America. Remote sensing has the ability to fill the data gaps of long-term infestation monitoring, but the elimination of observational noise and attributing changes quantitatively are two main challenges in its effective application. Here, we present a forest growth trend analysis method that integrates Landsat temporal trajectories and decision tree techniques to derive annual forest disturbance maps over an 11-year period. The temporal trajectory component successfully captures the disturbance events as represented by spectral segments, whereas decision tree modeling efficiently recognizes and attributes events based upon the characteristics of the segments. Validated against a point set sampled across a gradient of MPB mortality, 86.74% to 94.00% overall accuracy was achieved with small variability in accuracy among years. In contrast, the overall accuracies of single-date classifications ranged from 37.20% to 75.20% and only become comparable with our approach when the training sample size was increased at least four-fold. This demonstrates that the advantages of this time series work flow exist in its small training sample size requirement. The easily understandable, interpretable and modifiable characteristics of our approach suggest that it could be applicable to other ecoregions.

  15. Mountain Pine Beetles Use Volatile Cues to Locate Host Limber Pine and Avoid Non-Host Great Basin Bristlecone Pine.

    Science.gov (United States)

    Gray, Curtis A; Runyon, Justin B; Jenkins, Michael J; Giunta, Andrew D

    2015-01-01

    The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins) is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp.) are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not suitable hosts and are rarely attacked. How pioneering females locate host trees is not well understood, with prevailing theory involving random landings and/or visual cues. Here we show that female mountain pine beetles orient toward volatile organic compounds (VOCs) from host limber pine (Pinus flexilis James) and away from VOCs of non-host Great Basin bristlecone pine (Pinus longaeva Bailey) in a Y-tube olfactometer. When presented with VOCs of both trees, females overwhelmingly choose limber pine over Great Basin bristlecone pine. Analysis of VOCs collected from co-occurring limber and Great Basin bristlecone pine trees revealed only a few quantitative differences. Noticeable differences included the monoterpenes 3-carene and D-limonene which were produced in greater amounts by host limber pine. We found no evidence that 3-carene is important for beetles when selecting trees, it was not attractive alone and its addition to Great Basin bristlecone pine VOCs did not alter female selection. However, addition of D-limonene to Great Basin bristlecone pine VOCs disrupted the ability of beetles to distinguish between tree species. When presented alone, D-limonene did not affect behavior, suggesting that the response is mediated by multiple compounds. A better understanding of host selection by mountain pine beetles could improve strategies for managing this important forest insect. Moreover, elucidating how Great Basin bristlecone pine escapes attack by mountain pine beetles could provide insight into mechanisms underlying the incredible longevity of this tree species.

  16. Mountain Pine Beetles Use Volatile Cues to Locate Host Limber Pine and Avoid Non-Host Great Basin Bristlecone Pine

    Science.gov (United States)

    Gray, Curtis A.; Runyon, Justin B.; Jenkins, Michael J.; Giunta, Andrew D.

    2015-01-01

    The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins) is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp.) are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not suitable hosts and are rarely attacked. How pioneering females locate host trees is not well understood, with prevailing theory involving random landings and/or visual cues. Here we show that female mountain pine beetles orient toward volatile organic compounds (VOCs) from host limber pine (Pinus flexilis James) and away from VOCs of non-host Great Basin bristlecone pine (Pinus longaeva Bailey) in a Y-tube olfactometer. When presented with VOCs of both trees, females overwhelmingly choose limber pine over Great Basin bristlecone pine. Analysis of VOCs collected from co-occurring limber and Great Basin bristlecone pine trees revealed only a few quantitative differences. Noticeable differences included the monoterpenes 3-carene and D-limonene which were produced in greater amounts by host limber pine. We found no evidence that 3-carene is important for beetles when selecting trees, it was not attractive alone and its addition to Great Basin bristlecone pine VOCs did not alter female selection. However, addition of D-limonene to Great Basin bristlecone pine VOCs disrupted the ability of beetles to distinguish between tree species. When presented alone, D-limonene did not affect behavior, suggesting that the response is mediated by multiple compounds. A better understanding of host selection by mountain pine beetles could improve strategies for managing this important forest insect. Moreover, elucidating how Great Basin bristlecone pine escapes attack by mountain pine beetles could provide insight into mechanisms underlying the incredible longevity of this tree species. PMID:26332317

  17. Mountain Pine Beetles Use Volatile Cues to Locate Host Limber Pine and Avoid Non-Host Great Basin Bristlecone Pine.

    Directory of Open Access Journals (Sweden)

    Curtis A Gray

    Full Text Available The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp. are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not suitable hosts and are rarely attacked. How pioneering females locate host trees is not well understood, with prevailing theory involving random landings and/or visual cues. Here we show that female mountain pine beetles orient toward volatile organic compounds (VOCs from host limber pine (Pinus flexilis James and away from VOCs of non-host Great Basin bristlecone pine (Pinus longaeva Bailey in a Y-tube olfactometer. When presented with VOCs of both trees, females overwhelmingly choose limber pine over Great Basin bristlecone pine. Analysis of VOCs collected from co-occurring limber and Great Basin bristlecone pine trees revealed only a few quantitative differences. Noticeable differences included the monoterpenes 3-carene and D-limonene which were produced in greater amounts by host limber pine. We found no evidence that 3-carene is important for beetles when selecting trees, it was not attractive alone and its addition to Great Basin bristlecone pine VOCs did not alter female selection. However, addition of D-limonene to Great Basin bristlecone pine VOCs disrupted the ability of beetles to distinguish between tree species. When presented alone, D-limonene did not affect behavior, suggesting that the response is mediated by multiple compounds. A better understanding of host selection by mountain pine beetles could improve strategies for managing this important forest insect. Moreover, elucidating how Great Basin bristlecone pine escapes attack by mountain pine beetles could provide insight into mechanisms underlying the incredible longevity of this tree species.

  18. Fundamentals of Functional Analysis

    CERN Document Server

    Kutateladze, S S; Slovák, Jan

    2001-01-01

    A concise guide to basic sections of modern functional analysis. Included are such topics as the principles of Banach and Hilbert spaces, the theory of multinormed and uniform spaces, the Riesz-Dunford holomorphic functional calculus, the Fredholm index theory, convex analysis and duality theory for locally convex spaces with applications to the Schwartz spaces of distributions and Radon measures.

  19. Functional data analysis

    CERN Document Server

    Ramsay, J O

    1997-01-01

    Scientists today collect samples of curves and other functional observations. This monograph presents many ideas and techniques for such data. Included are expressions in the functional domain of such classics as linear regression, principal components analysis, linear modelling, and canonical correlation analysis, as well as specifically functional techniques such as curve registration and principal differential analysis. Data arising in real applications are used throughout for both motivation and illustration, showing how functional approaches allow us to see new things, especially by exploiting the smoothness of the processes generating the data. The data sets exemplify the wide scope of functional data analysis; they are drwan from growth analysis, meterology, biomechanics, equine science, economics, and medicine. The book presents novel statistical technology while keeping the mathematical level widely accessible. It is designed to appeal to students, to applied data analysts, and to experienced researc...

  20. Fundamentals of functional analysis

    CERN Document Server

    Farenick, Douglas

    2016-01-01

    This book provides a unique path for graduate or advanced undergraduate students to begin studying the rich subject of functional analysis with fewer prerequisites than is normally required. The text begins with a self-contained and highly efficient introduction to topology and measure theory, which focuses on the essential notions required for the study of functional analysis, and which are often buried within full-length overviews of the subjects. This is particularly useful for those in applied mathematics, engineering, or physics who need to have a firm grasp of functional analysis, but not necessarily some of the more abstruse aspects of topology and measure theory normally encountered. The reader is assumed to only have knowledge of basic real analysis, complex analysis, and algebra. The latter part of the text provides an outstanding treatment of Banach space theory and operator theory, covering topics not usually found together in other books on functional analysis. Written in a clear, concise manner,...

  1. Use of CART analysis to differentiate pollen of red pine ( Pinus resinosa) and jack pine ( P. banksiana) in New England

    Science.gov (United States)

    Barton, Andrew M.; Nurse, Andrea M.; Michaud, Katelyn; Hardy, Sarah W.

    2011-01-01

    The identification of fossil pollen at the generic rather than species level is hampering progress in understanding the biogeography and dynamics of paleo-vegetation. We used CART analysis to facilitate the differentiation of fossil pollen of Pinus banksiana and Pinusresinosa, which are morphologically similar and nearly always combined in paleoecological studies. The CART model, using four of the ten morphological traits measured, exhibited a high level of correct identification for pollen of each of the species and shows promise as a tool for increasing the detail of paleoecological records and inferences.

  2. De Novo Transcriptome Sequencing Analysis of cDNA Library and Large-Scale Unigene Assembly in Japanese Red Pine (Pinus densiflora).

    Science.gov (United States)

    Liu, Le; Zhang, Shijie; Lian, Chunlan

    2015-12-04

    Japanese red pine (Pinus densiflora) is extensively cultivated in Japan, Korea, China, and Russia and is harvested for timber, pulpwood, garden, and paper markets. However, genetic information and molecular markers were very scarce for this species. In this study, over 51 million sequencing clean reads from P. densiflora mRNA were produced using Illumina paired-end sequencing technology. It yielded 83,913 unigenes with a mean length of 751 bp, of which 54,530 (64.98%) unigenes showed similarity to sequences in the NCBI database. Among which the best matches in the NCBI Nr database were Picea sitchensis (41.60%), Amborella trichopoda (9.83%), and Pinus taeda (4.15%). A total of 1953 putative microsatellites were identified in 1784 unigenes using MISA (MicroSAtellite) software, of which the tri-nucleotide repeats were most abundant (50.18%) and 629 EST-SSR (expressed sequence tag- simple sequence repeats) primer pairs were successfully designed. Among 20 EST-SSR primer pairs randomly chosen, 17 markers yielded amplification products of the expected size in P. densiflora. Our results will provide a valuable resource for gene-function analysis, germplasm identification, molecular marker-assisted breeding and resistance-related gene(s) mapping for pine for P. densiflora.

  3. De Novo Transcriptome Sequencing Analysis of cDNA Library and Large-Scale Unigene Assembly in Japanese Red Pine (Pinus densiflora

    Directory of Open Access Journals (Sweden)

    Le Liu

    2015-12-01

    Full Text Available Japanese red pine (Pinus densiflora is extensively cultivated in Japan, Korea, China, and Russia and is harvested for timber, pulpwood, garden, and paper markets. However, genetic information and molecular markers were very scarce for this species. In this study, over 51 million sequencing clean reads from P. densiflora mRNA were produced using Illumina paired-end sequencing technology. It yielded 83,913 unigenes with a mean length of 751 bp, of which 54,530 (64.98% unigenes showed similarity to sequences in the NCBI database. Among which the best matches in the NCBI Nr database were Picea sitchensis (41.60%, Amborella trichopoda (9.83%, and Pinus taeda (4.15%. A total of 1953 putative microsatellites were identified in 1784 unigenes using MISA (MicroSAtellite software, of which the tri-nucleotide repeats were most abundant (50.18% and 629 EST-SSR (expressed sequence tag- simple sequence repeats primer pairs were successfully designed. Among 20 EST-SSR primer pairs randomly chosen, 17 markers yielded amplification products of the expected size in P. densiflora. Our results will provide a valuable resource for gene-function analysis, germplasm identification, molecular marker-assisted breeding and resistance-related gene(s mapping for pine for P. densiflora.

  4. Limber Pine (Pinus flexilis James), a Flexible Generalist of Forest Communities in the Intermountain West.

    Science.gov (United States)

    Windmuller-Campione, Marcella A; Long, James N

    2016-01-01

    As forest communities continue to experience interactions between climate change and shifting disturbance regimes, there is an increased need to link ecological understanding to applied management. Limber pine (Pinus flexilis James.), an understudied species of western North America, has been documented to dominate harsh environments and thought to be competitively excluded from mesic environments. An observational study was conducted using the Forest Inventory and Analysis Database (FIAD) to test the competitive exclusion hypothesis across a broad elevational and geographic area within the Intermountain West, USA. We anticipated that competitive exclusion would result in limber pine's absence from mid-elevation forest communities, creating a bi-modal distribution. Using the FIAD database, limber pine was observed to occur with 22 different overstory species, which represents a surprising number of the woody, overstory species commonly observed in the Intermountain West. There were no biologically significant relationships between measures of annual precipitation, annual temperature, or climatic indices (i.e. Ombrothermic Index) and limber pine dominance. Limber pine was observed to be a consistent component of forest communities across elevation classes. Of the plots that contained limber pine regeneration, nearly half did not have a live or dead limber pine in the overstory. However, limber pine regeneration was greater in plots with higher limber pine basal area and higher average annual precipitation. Our results suggest limber pine is an important habitat generalist, playing more than one functional role in forest communities. Generalists, like limber pine, may be increasingly important, as managers are challenged to build resistance and resilience to future conditions in western forests. Additional research is needed to understand how different silvicultural systems can be used to maintain multi-species forest communities.

  5. Functional activity of soil microbial communities in post-fire pine stands of Tolyatti, Samara oblast

    Science.gov (United States)

    Maksimova, E. Yu.; Kudinova, A. G.; Abakumov, E. V.

    2017-02-01

    The state of microbial communities in gray-humus soils (Eutric Fluvic Arenosols (Ochric)) of pine stands in the city of Tolyatti after forest fires of 2010 is analyzed. It is shown that fires exert negative effects on the structure and metabolic activity of microbial communities in the postpyrogenic soils. The content of the carbon of microbial biomass and the intensity of microbial respiration in the upper organic horizons of the post-fire plots decrease by 6.5 and 3.4 times, respectively, in comparison with those in the soils of background plots. However, the fire has not affected the studied microbiological parameters of the soils at the depths of more than 10 cm. The maximum content of the carbon of microbial biomass carbon and the maximum intensity of microbial respiration have been found in the subsurface AY2 and AC horizons two-three years the fire. An increase in the microbial metabolic quotient (the ratio of soil respiration to microbial biomass) attests to the disturbance of the ecophysiological state of soil microbial communities after the pyrogenic impact.

  6. Lectures on Functional Analysis

    CERN Document Server

    Kurepa, Svetozar; Kraljević, Hrvoje

    1987-01-01

    This volume consists of a long monographic paper by J. Hoffmann-Jorgensen and a number of shorter research papers and survey articles covering different aspects of functional analysis and its application to probability theory and differential equations.

  7. Applied functional analysis

    CERN Document Server

    Griffel, DH

    2002-01-01

    A stimulating introductory text, this volume examines many important applications of functional analysis to mechanics, fluid mechanics, diffusive growth, and approximation. Detailed enough to impart a thorough understanding, the text is also sufficiently straightforward for those unfamiliar with abstract analysis. Its four-part treatment begins with distribution theory and discussions of Green's functions. Essentially independent of the preceding material, the second and third parts deal with Banach spaces, Hilbert space, spectral theory, and variational techniques. The final part outlines the

  8. Nonlinear functional analysis

    Directory of Open Access Journals (Sweden)

    W. L. Fouché

    1983-03-01

    Full Text Available In this article we discuss some aspects of nonlinear functional analysis. It included reviews of Banach’s contraction theorem, Schauder’s fixed point theorem, globalising techniques and applications of homotopy theory to nonlinear functional analysis. The author emphasises that fundamentally new ideas are required in order to achieve a better understanding of phenomena which contain both nonlinear and definite infinite dimensional features.

  9. Comparison of high performance liquid chromatography and enzymatic analysis of soluble carbohydrates in loblolly pine

    Science.gov (United States)

    Patricia L. Faulkner; Michele M. Schoeneberger; Kim H. Ludovici

    1993-01-01

    Foliar tissue was collected from a field study designed to test impacts of atmospheric pollutants on loblolIy pine (Pinus taeda L.) seedlings. Standard enzymatic (ENZ) and high performance liquid chromatography (HPLC) methods were used to analyze the tissue for soluble sugars. A comparison of the methods revealed no significant diffennces in accuracy...

  10. Analysis of cellulase and polyphenol oxidase production by southern pine beetle associated fungi

    Science.gov (United States)

    Abduvali Valiev; Zumrut B. Ogel; Dier D. Klepzig

    2009-01-01

    In this study, the production of extracellular enzymes by fungi associated with southern pine beetle was investigated for the first time. Cellulase and polyphenol oxidase production were analyzed for three beetle associated fungi. Only the mutualistic symbiont Entomocorticium sp. A was found to produce cellulases and polyphenol oxidase....

  11. Natural fibres-based polymers: Part I—Mechanical analysis of Pine needles reinforced biocomposites

    Indian Academy of Sciences (India)

    Vijay Kumar Thakur; A S Singha

    2010-06-01

    Lack of resources and increasing environmental pollution has evoked great interest in the research of materials that are friendly to our health and environment. Polymer composites fabricated from natural fibres is currently the most promising area in polymer science. Keeping in view the various advantages of natural fibres, in current series of green composites a study on natural fibre reinforced polymer composites has been made. This paper presents the results of an experimental series designed to assess the possibility of Pine needles as reinforcing material in polymer composites. First of all, urea–formaldehyde resin was synthesized and optimized by evaluating its mechanical properties. Optimized resin was reinforced with employing Pine needles of different dimensions such as particle reinforcement, short fibre reinforcement and long fibre reinforcement. Experimental results obtained shows that mechanical properties such as tensile strength, compressive strength and wear resistance of UF resin increases to a considerable extent when reinforced with Pine needles. Further it has been observed that particle reinforcement is more effective as compared to short fibre and long fibre reinforcement. These results suggest that Pine needles can be potential candidates for use in natural fibre reinforced polymer composites. Thermal and morphological studies of these composites have also been carried out.

  12. Functional Object Analysis

    DEFF Research Database (Denmark)

    Raket, Lars Lau

    -effect formulations, where the observed functional signal is assumed to consist of both fixed and random functional effects. This thesis takes the initial steps toward the development of likelihood-based methodology for functional objects. We first consider analysis of functional data defined on high......-dimensional Euclidean spaces under the effect of additive spatially correlated effects, and then move on to consider how to include data alignment in the statistical model as a nonlinear effect under additive correlated noise. In both cases, we will give directions on how to generalize the methodology to more complex...

  13. Applied functional analysis

    CERN Document Server

    Oden, J Tinsley

    2010-01-01

    The textbook is designed to drive a crash course for beginning graduate students majoring in something besides mathematics, introducing mathematical foundations that lead to classical results in functional analysis. More specifically, Oden and Demkowicz want to prepare students to learn the variational theory of partial differential equations, distributions, and Sobolev spaces and numerical analysis with an emphasis on finite element methods. The 1996 first edition has been used in a rather intensive two-semester course. -Book News, June 2010

  14. A climate response function explaining most of the variation in the forest floor needle mass and the needle decomposition in pine forests across Europe

    DEFF Research Database (Denmark)

    Kurz-Besson, C.; Coûteaux, M.M.; Berg, Bjørn

    2006-01-01

    The forest floor needle mass and the decomposition rates of pine needle litter in a European climate transect were studied in order to estimate the impact of climate change on forest soil carbon sequestration. Eight pine forests preserved from fire were selected along a climatic latitudinal...... and a recalcitrant one. NF was correlated with actual evapotranspiration (AET) whereas the decomposition parameters (decomposition rate of the decomposable fraction, first year mass loss, forest floor needle mass, age of the most-decomposed category) were related to a combined response function to climate (CRF...... gradient from 40° to 60° N, from Spain and Portugal to Sweden. The forest floor (Oi and Oe layers) was sorted into five categories of increasing decomposition level according to morphological criteria. The needle mass loss in each category was determined using a linear mass density method. The needle...

  15. [Analysis of sap flow characteristics of the Chinese pine in typical Loess Plateau Region of China].

    Science.gov (United States)

    Zhang, Han-dan; Wei, Wei; Chen, Li-ding; Yu, Yang; Yang, Lei; Jia, Fu-yan

    2015-01-01

    Transpiration is one of the major processes of water consumption. It is significant for nutrients transportation, plant development, drought stress alleviation and micro-climate amelioration. In this study, the artificially planted Chinese pine (Pinus tabuliformis) was selected as an example to explore its transpiration characteristics, water-use strategies and the adaptability of the living environment in a typical loess hilly area of China. The results showed that: the sap flow rates of Chinese pine varied obviously in different seasons. The minimum sap flow rate occurred in April, followed by October, September and August, which was 0.024, 0.057, 0.062 and 0.071 mL x (cm2 x min)(-1), respectively. The rule of the diurnal variation of sap flow rate was regular, higher in daytime than at night. The flow rate was low during nighttime, but not zero. In rainfall events, the proportion of sap flow during nighttime was significantly increased, which was 3.9 times of that on sunny days, with 31.8% decrease in daytime. Chinese pine had great adaptability to unexpected climates. The variation trend of flow rate in the clod was similar to that on rainy days. The sap flow velocity was in great relevance with meteorological factors, with a declining order of solar radiation, vapor pressure deficit, relative humidity, and atmospheric temperature.

  16. Notes on functional analysis

    CERN Document Server

    Bhatia, Rajendra

    2009-01-01

    These notes are a record of a one semester course on Functional Analysis given by the author to second year Master of Statistics students at the Indian Statistical Institute, New Delhi. Students taking this course have a strong background in real analysis, linear algebra, measure theory and probability, and the course proceeds rapidly from the definition of a normed linear space to the spectral theorem for bounded selfadjoint operators in a Hilbert space. The book is organised as twenty six lectures, each corresponding to a ninety minute class session. This may be helpful to teachers planning a course on this topic. Well prepared students can read it on their own.

  17. Development of secondary pine forests after pine wilt disease in western Japan

    Energy Technology Data Exchange (ETDEWEB)

    Fujihara, Michiro [Natural History Museum and Inst., Chiba (Japan)

    1996-10-01

    The development of secondary Pinus densiflora (Japanese red pine) forests after pine wilt disease was studied through phytosociological analysis, estimation of forest structure before disease and size-structure, tree ring and stem analyses. Following the end of the disease, the growth of previously suppressed small oak trees was accelerated. This is quite different from the development of forests following fire, which starts with the establishment of pine seedlings. Pine wilt disease shifted the dominance of secondary forests from Pinus densiflora to Quercus serrata oak forest. In pine forests, disturbance by fire is important for forest maintenance. In contrast, disturbance by pine wilt disease leads to an acceleration of succession from pine forest to oak forest. 50 refs, 3 figs, 2 tabs

  18. Nonlinear functional analysis

    CERN Document Server

    Deimling, Klaus

    1985-01-01

    topics. However, only a modest preliminary knowledge is needed. In the first chapter, where we introduce an important topological concept, the so-called topological degree for continuous maps from subsets ofRn into Rn, you need not know anything about functional analysis. Starting with Chapter 2, where infinite dimensions first appear, one should be familiar with the essential step of consider­ ing a sequence or a function of some sort as a point in the corresponding vector space of all such sequences or functions, whenever this abstraction is worthwhile. One should also work out the things which are proved in § 7 and accept certain basic principles of linear functional analysis quoted there for easier references, until they are applied in later chapters. In other words, even the 'completely linear' sections which we have included for your convenience serve only as a vehicle for progress in nonlinearity. Another point that makes the text introductory is the use of an essentially uniform mathematical languag...

  19. Growth analysis of Scots pine (Pinus sylvestris L. seedlings cultivated in a wide range of experimental conditions

    Directory of Open Access Journals (Sweden)

    Włodzimierz Żelawski

    2014-01-01

    Full Text Available The work of this laboratory for many years with Scots pine seedlings has allowed to collect quite unique information as to the accumulation and distribution of dry matter and the reaction of plants to various environmental influences. It seems worthwhile to publish the main experimental data almost in extenso because they may be used in future work for building mathematical models of plant growth. The presented experimental data enabled to discuss controversial points of quantitative analysis of plant growth such as: the time instant and the initial value of growth to be taken as the starting points (t0 W0; exponential approximation of the growth curve; inadequacy of allometric approach in modelling vegetative growth of plants, etc. The discussion aims at defining more closely the essential notions of growth analysis.

  20. Analysis of tyrosine phosphorylation and phosphotyrosine-binding proteins in germinating seeds from Scots pine.

    Science.gov (United States)

    Kovaleva, Valentina; Cramer, Rainer; Krynytskyy, Hryhoriy; Gout, Ivan; Gout, Roman

    2013-06-01

    Protein tyrosine phosphorylation in angiosperms has been implicated in various physiological processes, including seed development and germination. In conifers, the role of tyrosine phosphorylation and the mechanisms of its regulation are yet to be investigated. In this study, we examined the profile of protein tyrosine phosphorylation in Scots pine seeds at different stages of germination. We detected extensive protein tyrosine phosphorylation in extracts from Scots pine (Pinus sylvestris L.) dormant seeds. In addition, the pattern of tyrosine phosphorylation was found to change significantly during seed germination, especially at earlier stages of post-imbibition which coincides with the initiation of cell division, and during the period of intensive elongation of hypocotyls. To better understand the molecular mechanisms of phosphotyrosine signaling, we employed affinity purification and mass spectrometry for the identification of pTyr-binding proteins from the extracts of Scots pine seedlings. Using this approach, we purified two proteins of 10 and 43 kDa, which interacted specifically with pTyr-Sepharose and were identified by mass spectrometry as P. sylvestris defensin 1 (PsDef1) and aldose 1-epimerase (EC:5.1.3.3), respectively. Additionally, we demonstrated that both endogenous and recombinant PsDef1 specifically interact with pTyr-Sepharose, but not Tyr-beads. As the affinity purification approach did not reveal the presence of proteins with known pTyr binding domains (SH2, PTB and C2), we suggest that plants may have evolved a different mode of pTyr recognition, which yet remains to be uncovered.

  1. Yellow pine regeneration as a function of fire severity and post-burn stand structure in the southern Appalachian Mountains

    Science.gov (United States)

    Michael A. Jenkins; Robert N. Klein; Virginia L. McDaniel

    2011-01-01

    We used pre- and post-burn fire effects data from six prescribed burns to examine post-burn threshold effects of stand structure (understory density, overstory density, shrub cover, duff depth, and total fuel load) on the regeneration of yellow pine (Pinus subgenus Diploxylon) seedlings and cover of herbaceous vegetation in six prescribed-fire management units located...

  2. Mountain Pine Beetle

    Science.gov (United States)

    Gene D. Amman; Mark D. McGregor; Robert E. Jr. Dolph

    1989-01-01

    The mountain pine beetle, Dendroctonus ponderosae Hopkins, is a member of a group of beetles known as bark beetles: Except when adults emerge and attack new trees, the mountain pine beetle completes its life cycle under the bark. The beetle attacks and kills lodgepole, ponderosa, sugar, and western white pines. Outbreaks frequently develop in lodgepole pine stands that...

  3. High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster).

    Science.gov (United States)

    Plomion, C; Bartholomé, J; Lesur, I; Boury, C; Rodríguez-Quilón, I; Lagraulet, H; Ehrenmann, F; Bouffier, L; Gion, J M; Grivet, D; de Miguel, M; de María, N; Cervera, M T; Bagnoli, F; Isik, F; Vendramin, G G; González-Martínez, S C

    2016-03-01

    Maritime pine provides essential ecosystem services in the south-western Mediterranean basin, where it covers around 4 million ha. Its scattered distribution over a range of environmental conditions makes it an ideal forest tree species for studies of local adaptation and evolutionary responses to climatic change. Highly multiplexed single nucleotide polymorphism (SNP) genotyping arrays are increasingly used to study genetic variation in living organisms and for practical applications in plant and animal breeding and genetic resource conservation. We developed a 9k Illumina Infinium SNP array and genotyped maritime pine trees from (i) a three-generation inbred (F2) pedigree, (ii) the French breeding population and (iii) natural populations from Portugal and the French Atlantic coast. A large proportion of the exploitable SNPs (2052/8410, i.e. 24.4%) segregated in the mapping population and could be mapped, providing the densest ever gene-based linkage map for this species. Based on 5016 SNPs, natural and breeding populations from the French gene pool exhibited similar level of genetic diversity. Population genetics and structure analyses based on 3981 SNP markers common to the Portuguese and French gene pools revealed high levels of differentiation, leading to the identification of a set of highly differentiated SNPs that could be used for seed provenance certification. Finally, we discuss how the validated SNPs could facilitate the identification of ecologically and economically relevant genes in this species, improving our understanding of the demography and selective forces shaping its natural genetic diversity, and providing support for new breeding strategies.

  4. Genomic and Functional Analyses of Rhodococcus equi Phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7 ▿

    Science.gov (United States)

    Summer, E. J.; Liu, M.; Gill, J. J.; Grant, M.; Chan-Cortes, T. N.; Ferguson, L.; Janes, C.; Lange, K.; Bertoli, M.; Moore, C.; Orchard, R. C.; Cohen, N. D.; Young, R.

    2011-01-01

    The isolation and results of genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiDocB7, ReqiPine5, and ReqiPoco6 (hereafter referred to as Pepy6, DocB7, Pine5, and Poco6, respectively) are reported. Two phages, Pepy6 and Poco6, more than 75% identical, exhibited genome organization and protein sequence likeness to Lactococcus lactis phage 1706 and clostridial prophage elements. An unusually high fraction, 27%, of Pepy6 and Poco6 proteins were predicted to possess at least one transmembrane domain, a value much higher than the average of 8.5% transmembrane domain-containing proteins determined from a data set of 36,324 phage protein entries. Genome organization and protein sequence comparisons place phage Pine5 as the first nonmycobacteriophage member of the large Rosebush cluster. DocB7, which had the broadest host range among the four isolates, was not closely related to any phage or prophage in the database, and only 23 of 105 predicted encoded proteins could be assigned a functional annotation. Because of the relationship of Rhodococcus to Mycobacterium, it was anticipated that these phages should exhibit some of the features characteristic of mycobacteriophages. Traits that were identified as shared by the Rhodococcus phages and mycobacteriophages include the prevalent long-tailed morphology and the presence of genes encoding LysB-like mycolate-hydrolyzing lysis proteins. Application of DocB7 lysates to soils amended with a host strain of R. equi reduced recoverable bacterial CFU, suggesting that phage may be useful in limiting R. equi load in the environment while foals are susceptible to infection. PMID:21097585

  5. Structural and functional characterization of the 5' upstream region of a glutamine synthetase gene from Scots pine

    OpenAIRE

    Avila, Concepción; Cantón, Francisco; Barnestein, Pilar; Suárez, María-Fernanda; Marraccini, Pierre; Rey, Manuel; Humara, Jaime; Ordás, Ricardo; Cánovas, Francisco

    2002-01-01

    International audience; We report here the isolation and characterization of a genomic clone encoding Scots pine (P. sylvestris) cytosolic glutamine synthetase GS1a. The clone contains the 5' half of the gene including part of the coding region organized in seven exons, interrupted by 6 introns and 980 bp upstream of the translation initiation codon. Earlier experiments carried out in our lab have shown that the GS1a gene is expressed in a light dependent fashion during the initial stages of ...

  6. A Primer on Functional Analysis

    Science.gov (United States)

    Yoman, Jerome

    2008-01-01

    This article presents principles and basic steps for practitioners to complete a functional analysis of client behavior. The emphasis is on application of functional analysis to adult mental health clients. The article includes a detailed flow chart containing all major functional diagnoses and behavioral interventions, with functional assessment…

  7. Modeling corewood-outerwood transition in loblolly pine using wood specific gravity

    Science.gov (United States)

    Christian R. Mora; H. Lee Allen; Richard F. Daniels; Alexander Clark

    2007-01-01

    A modified logistic function was used for modeling specific-gravity profiles obtained from X-ray densitometry analysis in 675 loblolly pine (Pinus taeda L.) trees in four regeneration trials. Trees were 21 or 22 years old at the time of the study. The function was used for demarcating corewood, transitional, and outerwood zones. Site and silvicultural effects were...

  8. Traits of Masson Pine Affecting Attack of Pine Wood Nematode

    Institute of Scientific and Technical Information of China (English)

    Juan Shi; You-Qing Luo; Ji-Ying Song; Hai-Wei Wu; Lei Wang; Gary Z. Wang

    2007-01-01

    Masson pine characteristics were analyzed in five sample plots in Zhejiang Province, China.Bursaphelenchus xylophilus (Steiner et Buhrer) Nickle (pine wood nematode, PWN) carried by Monochamus alternatus predominately attacked Masson pines in the lower diameter classes.Among the 10 tree characteristics examined, mean crown width, percentage of bole with crown, 5-year cumulative diameter growth, and resin amount showed significant variation between successfully attacked and unattacked trees.The attacked trees had a lower percentage of the bole covered with tree crown, lower crown width, lower radial growth in the last 5 years, and produced less induced resinosis than unattacked trees.Results allowed for effective ranking of the pine forest based on individual tree resistance to PWN.This Index of resistance should be considered throughout the development of an "Evaluation Criterion and Indicator System".The preceding ranking can be used to evaluate the resistance and resiliency of the pine forest ecosystem to PWN's invasion, which is similar to Pest Risk Analysis (PRA).

  9. Landscape-scale analysis of aboveground tree carbon stocks affected by mountain pine beetles in Idaho

    Science.gov (United States)

    Bright, B. C.; Hicke, J. A.; Hudak, A. T.

    2012-12-01

    Bark beetle outbreaks kill billions of trees in western North America, and the resulting tree mortality can significantly impact local and regional carbon cycling. However, substantial variability in mortality occurs within outbreak areas. Our objective was to quantify landscape-scale effects of beetle infestations on aboveground carbon (AGC) stocks using field observations and remotely sensed data across a 5054 ha study area that had experienced a mountain pine beetle outbreak. Tree mortality was classified using multispectral imagery that separated green, red, and gray trees, and models relating field observations of AGC to LiDAR data were used to map AGC. We combined mortality and AGC maps to quantify AGC in beetle-killed trees. Thirty-nine per cent of the forested area was killed by beetles, with large spatial variability in mortality severity. For the entire study area, 40-50% of AGC was contained in beetle-killed trees. When considered on a per-hectare basis, 75-89% of the study area had >25% AGC in killed trees and 3-6% of the study area had >75% of the AGC in killed trees. Our results show that despite high variability in tree mortality within an outbreak area, bark beetle epidemics can have a large impact on AGC stocks at the landscape scale.

  10. Theoretical numerical analysis a functional analysis framework

    CERN Document Server

    Atkinson, Kendall

    2005-01-01

    This textbook prepares graduate students for research in numerical analysis/computational mathematics by giving to them a mathematical framework embedded in functional analysis and focused on numerical analysis. This helps the student to move rapidly into a research program. The text covers basic results of functional analysis, approximation theory, Fourier analysis and wavelets, iteration methods for nonlinear equations, finite difference methods, Sobolev spaces and weak formulations of boundary value problems, finite element methods, elliptic variational inequalities and their numerical solu

  11. Functional and structural causes of forests productivity decay with age: experimental analysis of a chrono-sequence of maritime pine stands; Causes fonctionnelles et structurales du declin de productivite des forets avec l'age: analyse experimentale d'une chronosequence de peuplements de pin maritime

    Energy Technology Data Exchange (ETDEWEB)

    Delzon, S.

    2004-06-15

    The aim of this work was to understand the causes of forest growth decline with increasing age. We investigated changes in several eco-physiological parameters in a chrono-sequence of four even-aged maritime pine stands. Above-ground productivity declined by a factor of 2.5 from the youngest to the oldest stands. This decline was explained by a decrease of gross primary production, due to a decline in both stand leaf area and foliar productivity. Our measurements clearly showed a decrease in leaf-specific hydraulic conductance with increasing tree height (50% lower in 30 m trees than in 10 m trees). We also found that needle water potential was maintained above a minimum threshold value of -2.0 MPa independently of tree age and height. This hydraulic homeostasis occurred through a decline in leaf / sapwood area ratio (hydraulic compensation) and a decline in stomatal conductance (physiological compensation). Both the increased investment in non-productive versus productive tissues and stomatal closure may have contributed to the observed decrease in foliar productivity with increasing tree height. Consequently, over-storey transpiration was reduced by a factor of three between the 10-yr and the 91-yr old stands. Nevertheless, our findings suggest that the total ecosystem evaporation remains constant in ageing forests due to an increase in under-storey transpiration, which may counterbalance the decrease in tree transpiration. Photosynthetic capacity also decreased in older stands, mainly through a decline in phosphorus concentration. Our results support the hypothesis that the age-related decline in forest growth is associated with decreased availability of the most limiting resource, this being phosphorus for the maritime Pine chrono-sequence investigated. (author)

  12. Model analysis of the effects of atmospheric drivers on storage water use in Scots pine

    Directory of Open Access Journals (Sweden)

    H. Verbeeck

    2007-08-01

    Full Text Available Storage water use is an indirect consequence of the interplay between different meteorological drivers through their effect on water flow and water potential in trees. We studied these microclimatic drivers of storage water use in Scots pine (Pinus sylvestris L. growing in a temperate climate. The storage water use was modeled using the ANAFORE model, integrating a dynamic water flow and – storage model with a process-based transpiration model. The model was calibrated and validated with sap flow measurements for the growing season of 2000 (26 May–18 October.

    Because there was no severe soil drought during the study period, we were able to study atmospheric effects. Incoming radiation and vapour pressure deficit (VPD were the main atmospheric drivers of storage water use. The general trends of sap flow and storage water use are similar, and follow more or less the pattern of incoming radiation. Nevertheless, considerable differences in the day-to-day pattern of sap flow and storage water use were observed. VPD was determined to be one of the main drivers of these differences. During dry atmospheric conditions (high VPD storage water use was reduced. This reduction was higher than the reduction in measured sap flow. Our results suggest that the trees did not rely more on storage water during periods of atmospheric drought, without severe soil drought. The daily minimum tree water content was lower in periods of high VPD, but the reserves were not completely depleted after the first day of high VPD, due to refilling during the night.

    Nevertheless, the tree water content deficit was a third important factor influencing storage water use. When storage compartments were depleted beyond a threshold, storage water use was limited due to the low water potential in the storage compartments. The maximum relative contribution of storage water to daily transpiration was also constrained by an increasing tree water content

  13. Functional evaluation for effective compositions in seed oil of Korean pine%红松籽油有效成分功能评价

    Institute of Scientific and Technical Information of China (English)

    王振宇; 陈小强

    2004-01-01

    The effect of seed oil of Korean pine (Pinus koraiensis) on the rats' blood-fat and its anti-ageing function was studied for appraising the efficacy of the seed oil of Korean pine. Sixty experimental rats were randomly divided into 5 groups (half males and half females in each group) as normal control group, high fat diet control group, and three groups (Group 1 Group 2, Group 3) that were fed with feedstuff with the contents of the seed oil of 2.0g/(kg·d-1), 4.0g/(kg·d-1) and 8.0g/(kg·d-1), respectively. The indexes such as superoxide dismutase (SOD), glutathione peroxidase (GSH-PX) and anti-oxidation capacity (AOC) were measured by Reagent Kit method. It was found that the seed oil of the Korean pine could reduce the content of triglyceride and improve SOD as well as GSH-PX activity in serum. These indexes of the rats in Group 2 fed with Korean pine seed oil of 4.0 g/(kg·d-1) reached the significant level and those of rats in Group 3 fed with the seed oil of 8.0 g/(kg·d-1) reached the extremely significant level. The results indicated the seed oil of Korean pine had function of regulating the level of blood-fat and anti-ageing.%红松是分布于中国东北的珍贵树种,其种籽油中含有丰富的生物活性物质,对人体的生理活动具有重要的调节功能.为评价红松籽油的功效,本文就红松籽油对大鼠血脂的影响及其抗衰老功能进行了研究,对不同组的大鼠喂添加了不同含量的种籽油的饲料.将60只大鼠随机地分成五组(每组雌雄各半).实验过程中,用松籽油处理的三个组的大鼠分别喂食含2.0g/(kg·d-1), 4.0g/(kg·d-1)和8.0g/(kg·d-1)剂量松籽油的饲料.用试剂盒法对超氧化物歧化酶(SOD)和谷胱甘肽过氧化物酶(GSH-PX)以及抗氧化(AOC)等指标进行了测定.经研究发现:松籽油可以降低血清甘油三酯含量,提高血清SOD和 GSH-PX的活力.其中喂食4.0g/(kg·d-1)剂量红松籽油的一组,其各项测定指

  14. Lodgepole Pine Dwarf Mistletoe

    Science.gov (United States)

    Frank G. Hawksworth; Oscar J. Dooling

    1984-01-01

    Lodgepole pine dwarf mistletoe (Arceuthobium americanum Nutt. ex Engelm.) is a native, parasitic, seed plant that occurs essentially throughout the range of lodgepole pine in North America. It is the most damaging disease agent in lodgepole pine, causing severe growth loss and increased tree mortality. Surveys in the Rocky Mountains show that the parasite is found in...

  15. Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development

    Directory of Open Access Journals (Sweden)

    Jeanne A. Robert

    2016-07-01

    Full Text Available Cold-induced mortality has historically been a key aspect of mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae, population control, but little is known about the molecular basis for cold tolerance in this insect. We used RNA-seq analysis to monitor gene expression patterns of mountain pine beetle larvae at four time points during their overwintering period—early-autumn, late-autumn, early-spring, and late-spring. Changing transcript profiles over the winter indicates a multipronged physiological response from larvae that is broadly characterized by gene transcripts involved in insect immune responses and detoxification during the autumn. In the spring, although transcripts associated with developmental process are present, there was no particular biological process dominating the transcriptome.

  16. Analysis of Risk of Huangshan Pine Due to Lightning%黄山名松雷电灾害风险分析

    Institute of Scientific and Technical Information of China (English)

    程向阳; 王凯; 杨仲江

    2011-01-01

    雷电是威胁自然和文化遗产安全的主要自然灾害之一.正确的雷电灾害风险评估可以有效防止或降低风险,减少损失.使用统计软件对黄山闪电数据进行统计分析,研究与黄山地质地貌、雷电环境等相关的雷电活动规律及其可能对黄山松和游客的影响,利用IEC的方法并进行改进,以龙爪松为例,给出相关风险分析值.研究表明:龙爪松引起的人身伤亡风险较大,超过允许值.风险原因主要为若雷电直接击中龙爪松,由于旁络闪击及雷击的机械作用导致树木爆裂伤人,同时还有雷击引起接触和跨步电压导致人员伤亡事故发生的风险.而龙爪松遭雷击起火或爆裂引起的损毁风险较小,将会达到数百年一遇的几率.评估结果对黄山游客雷电安全管理具有重要意义,对国内外类似风景区的防雷工作具有指导意义.%Huangshan pine is a kind of invaluable resource in Huangshan, so loss on such unrecoverable cultural heritage caused by lightning strike should be prevented. In this paper, lightning activities associated with geological landform and its effect on Huangshan pine as well as tourists are studied and analyzed. Some relevant values of the risk analysis are listed by taking Longzhao pine for example. According to the research, the risk of personal injury and death for Longzhao pine exceeds the permissible risk value. The main reason is that the lightning stroke (from trunk or crown to people) and burst wounding of tree due to the lightning direct strike to Longzhao pine. Meanwhile, the risk caused by contact and step voltage wounding should also be taken into account. However, the risk of damage to Longzhao pine caused by fire and burst is much smaller, and it will likely happen once in hundreds of years.

  17. Automatic Functional Harmonic Analysis

    NARCIS (Netherlands)

    de Haas, W.B.; Magalhães, J.P.; Wiering, F.; Veltkamp, R.C.

    2013-01-01

    Music scholars have been studying tonal harmony intensively for centuries, yielding numerous theories and models. Unfortunately, a large number of these theories are formulated in a rather informal fashion and lack mathematical precision. In this article we present HarmTrace, a functional model of W

  18. Function Analysis and Decomposistion using Function Analysis Systems Technique

    Energy Technology Data Exchange (ETDEWEB)

    Wixson, James Robert

    1999-06-01

    The "Father of Value Analysis", Lawrence D. Miles, was a design engineer for General Electric in Schenectady, New York. Miles developed the concept of function analysis to address difficulties in satisfying the requirements to fill shortages of high demand manufactured parts and electrical components during World War II. His concept of function analysis was further developed in the 1960s by Charles W. Bytheway, a design engineer at Sperry Univac in Salt Lake City, Utah. Charles Bytheway extended Mile's function analysis concepts and introduced the methodology called Function Analysis Systems Technique (FAST) to the Society of American Value Engineers (SAVE) at their International Convention in 1965 (Bytheway 1965). FAST uses intuitive logic to decompose a high level, or objective function into secondary and lower level functions that are displayed in a logic diagram called a FAST model. Other techniques can then be applied to allocate functions to components, individuals, processes, or other entities that accomplish the functions. FAST is best applied in a team setting and proves to be an effective methodology for functional decomposition, allocation, and alternative development.

  19. Function Analysis and Decomposistion using Function Analysis Systems Technique

    Energy Technology Data Exchange (ETDEWEB)

    J. R. Wixson

    1999-06-01

    The "Father of Value Analysis", Lawrence D. Miles, was a design engineer for General Electric in Schenectady, New York. Miles developed the concept of function analysis to address difficulties in satisfying the requirements to fill shortages of high demand manufactured parts and electrical components during World War II. His concept of function analysis was further developed in the 1960s by Charles W. Bytheway, a design engineer at Sperry Univac in Salt Lake City, Utah. Charles Bytheway extended Mile's function analysis concepts and introduced the methodology called Function Analysis Systems Techniques (FAST) to the Society of American Value Engineers (SAVE) at their International Convention in 1965 (Bytheway 1965). FAST uses intuitive logic to decompose a high level, or objective function into secondary and lower level functions that are displayed in a logic diagram called a FAST model. Other techniques can then be applied to allocate functions to components, individuals, processes, or other entities that accomplish the functions. FAST is best applied in a team setting and proves to be an effective methodology for functional decomposition, allocation, and alternative development.

  20. Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis.

    Science.gov (United States)

    Keeling, Christopher I; Li, Maria; Sandhu, Harpreet K; Henderson, Hannah; Yuen, Macaire Man Saint; Bohlmann, Jörg

    2016-03-01

    Bark beetles (Coleoptera: Scolytinae) are pests of many forests around the world. The mountain pine beetle (MPB), Dendroctonus ponderosae Hopkins, is a significant pest of western North American pine forests. The MPB is able to overcome the defences of pine trees through pheromone-assisted aggregation that results in a mass attack of host trees. These pheromones, both male and female produced, are believed to be biosynthesized in the midgut and/or fat bodies of these insects. We used metabolite analysis, quantitative proteomics (iTRAQ) and transcriptomics (RNA-seq) to identify proteins and transcripts differentially expressed between sexes and between tissues when treated with juvenile hormone III. Juvenile hormone III induced frontalin biosynthesis in males and trans-verbenol biosynthesis in females, as well as affected the expression of many proteins and transcripts in sex- and tissue-specific ways. Based on these analyses, we identified candidate genes involved in the biosynthesis of frontalin, exo-brevicomin, and trans-verbenol pheromones. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Resistance of mixed subalpine forest to fire frequency changes: the ecological function of dwarf pine (Pinus mugo ssp. mugo)

    Science.gov (United States)

    Leys, Bérangère; Carcaillet, Christopher; Blarquez, Olivier; Lami, Andrea; Musazzi, Simona; Trevisan, Renata

    2014-04-01

    The availability of fuel and climate are major factors responsible for forest fire activity over time. Here, we tested the hypothesis that forest ecosystems containing a high shrub biomass, which constitutes a fuel load, and affected by a warmer climate, which is associated with drier conditions and a longer fire season, are more prone to fire. Fire occurrence and woody vegetation histories were reconstructed for a subalpine site (Lago di Colbricon Inferiore) in the Dolomites, part of the eastern Italian Alps, for the past 13,000 years. The modern wet climate prevents fire in this area, in spite of the warm summers and an abundant biomass of dwarf pine (Pinus mugo) and three other conifer tree species (Pinus cembra, Picea abies, and Larix decidua). Past fire history reconstructed from sedimentary charcoal showed a median fire return interval of 140 years (30-735 yr fire-1), with a high variability (SD ± 170 years) throughout the Holocene, suggesting that the past environment was more favourable to fire than the modern one, probably due to a drier climate or to different fuel availability. The subalpine community containing P. mugo remained stable for the past 9000 years, despite the variability of the fire return interval. Interestingly, the fire frequency is higher at Lago di Colbricon than at sites in the western Alps that lack P. mugo, suggesting that this species tolerates fire disturbance. In fact, it probably favours the spread of fire due to its flammable biomass, prostrated form, and dense layering canopy, thus offsetting the influence of the wet climate. Since the 19th century, the removal of dwarf pine to promote subalpine grasslands may have suppressed fires in this region.

  2. Elementary functional analysis

    CERN Document Server

    Shilov, Georgi E

    1996-01-01

    Introductory text covers basic structures of mathematical analysis (linear spaces, metric spaces, normed linear spaces, etc.), differential equations, orthogonal expansions, Fourier transforms - including problems in the complex domain, especially involving the Laplace transform - and more. Each chapter includes a set of problems, with hints and answers. Bibliography. 1974 edition.

  3. Pine Island Glacier, Antarctica

    Science.gov (United States)

    2001-01-01

    This pair of MISR images of the Pine Island Glacier in western Antarctica was acquired on December 12, 2000 during Terra orbit 5246. At left is a conventional, true-color image from the downward-looking (nadir) camera. The false-color image at right is a composite of red band data taken by the MISR forward 60-degree, nadir, and aftward 60-degree cameras, displayed in red, green, and blue colors, respectively. Color variations in the left (true-color) image highlight spectral differences. In the multi-angle composite, on the other hand, color variations act as a proxy for differences in the angular reflectance properties of the scene. In this representation, clouds show up as light purple. Blue to orange gradations on the surface indicate a transition in ice texture from smooth to rough. For example, the bright orange 'carrot-like' features are rough crevasses on the glacier's tongue. In the conventional nadir view, the blue ice labeled 'rough crevasses' and 'smooth blue ice' exhibit similar coloration, but the multi-angle composite reveals their different textures, with the smoother ice appearing dark purple instead of orange. This could be an indicator of different mechanisms by which this ice is exposed. The multi-angle view also reveals subtle roughness variations on the frozen sea ice between the glacier and the open water in Pine Island Bay.To the left of the 'icebergs' label are chunks of floating ice. Additionally, smaller icebergs embedded in the frozen sea ice are visible below and to the right of the label. These small icebergs are associated with dark streaks. Analysis of the illumination geometry suggests that these streaks are surface features, not shadows. Wind-driven motion and thinning of the sea ice in the vicinity of the icebergs is one possible explanation.Recently, Robert Bindschadler, a glaciologist at the NASA Goddard Space Flight Center discovered in Landsat 7 imagery a newly-formed crack traversing the Pine Island Glacier. This crack is

  4. 玛咖松花粉合剂抗疲劳作用的研究%Studies on the antifatigue function of Maca and Pine Pollen Mixture

    Institute of Scientific and Technical Information of China (English)

    胡水保; 李海龙; 陈琳婉; 王国付

    2014-01-01

    目的:研究玛咖松花粉合剂对小鼠抗运动性疲劳的作用。方法采用四批雄性 Balb/c小鼠,每批50只,按照体重分为5个实验组,分别给予生理盐水(15mL/(kg· d))、玛咖松花粉合剂0.5g/(kg· d)、1.0g/(kg· d)、2.5g/(kg· d),红牛饮料(15mL/(kg· d)),连续灌胃30d后分别测定各组小鼠游泳时间、尿素氮、肝糖原、血乳酸、谷草转氨酶和谷丙转氨酶含量。结果玛咖松花粉合剂能显著延长小鼠游泳时间(P <0.05),降低运动后小鼠血尿素氮含量,增加肝糖原含量(P<0.05),快速降低血乳酸(P<0.05),且谷草转氨酶和谷丙转氨酶含量与阴性对照组无明显差异( P>0.05)。结论玛咖松花粉合剂具有抗小鼠运动性疲劳的作用。它是通过提高运动耐力,增加肝糖原储备,加速乳酸的清除来抗运动性疲劳的,同时玛咖松花粉合剂对小鼠肝功能均无影响。%OBJECTIVE To study the antifatigue function of Maca and Pine pollen mixture to mouse.METHODS 4 experiments were carried out , in each of which 50 Balb/c male mice were used and they were divided into 5 groups:saline (15mL/(kg· d)),Maca and Pine pollen mixture 0.5g/(kg· d),1.0g/(kg· d),2.5g/(kg· d),Red Bull (15mL/(kg· d)) were given respectively by american ginseng ,content of ured nitro-gen、hepatic glycogen、blood lactic、AST and ALT were determined for 30days.The fourtestswere used to determine swimming time.RESULTS Maca and Pine pollen mixture could extend swimming time withweight loading in mice (P0.05 ).CONCLUSION Maca and Pine pollen mixture can relieve physical fatigue.It can improve exercise tolerance ,increase hepatic glycogen ,speed up the remov-al of blood lactose to antifatigue ,and had no effect on liver function.

  5. Response of pine forest to disturbance of pine wood nematode with interpretative structural model

    Institute of Scientific and Technical Information of China (English)

    Juan SHI; Youqing LUO; Xiaosu YAN; Weiping CHEN; Ping JIANG

    2009-01-01

    Pine wood nematode (PWN, Bursaphelenchus xylophilus), originating from North America, causes destructive pine wilt disease. Different pine forest ecosystems have different resistances to B. xylophilus,and after its invasion, the resilience and restoration direction of different ecosystems also varies. In this study, an interpretative structural model was applied for analyzing the response of pine forest ecosystem to PWN disturbance. The result showed that a five-degree multi-stage hierarchical system affected the response of the pine forest ecosystem to PWN disturbance, in which direct affecting factors are resistance and resilience. Furthermore,the analysis to the 2nd, 3rd and 4th degree factors showed that not only does distribution pattern of plant species and pine's ecological features affect the resistance of pine forests' ecosystem, but removal of attacked trees and other measures also influence the resistance through indirectly affecting the damage degree of Monochamus alternatus and distribution pattern of plant species. As for resilience,it is influenced directly by soil factors, hydrology,surrounding species provenance and biological character-istics of the second and jointly dominant species, and the climate factors can also have a direct or indirect effect on it by affecting the above factors. Among the fifth elements,the elevation, gradient and slope direction, topographical factors, diversity of geographical location and improve-ment of prevention technology all influence the response of pine forest ecosystem to PWN disturbance.

  6. Transform analysis of generalized functions

    CERN Document Server

    Misra, O P

    1986-01-01

    Transform Analysis of Generalized Functions concentrates on finite parts of integrals, generalized functions and distributions. It gives a unified treatment of the distributional setting with transform analysis, i.e. Fourier, Laplace, Stieltjes, Mellin, Hankel and Bessel Series.Included are accounts of applications of the theory of integral transforms in a distributional setting to the solution of problems arising in mathematical physics. Information on distributional solutions of differential, partial differential equations and integral equations is conveniently collected here.The volume will

  7. Optimization of a new extraction technique for analysis of verbenone and cis-verbenol in pine seeds

    OpenAIRE

    Liazid, Ali; Fernández Barbero, Gerardo; Palma Lovillo, Miguel; García Barroso, Carmelo

    2007-01-01

    Results from a systematic study of the factors affecting extraction of cis-verbenol and verbenone from pine seeds are presented. Five extraction conditions were investigated: extraction solvent, method of extraction, extraction temperature, volume of solvent, and the ratio of the mass of sample to the amount of extraction solvent.

  8. Functional Equations and Fourier Analysis

    OpenAIRE

    2010-01-01

    By exploring the relations among functional equations, harmonic analysis and representation theory, we give a unified and very accessible approach to solve three important functional equations -- the d'Alembert equation, the Wilson equation, and the d'Alembert long equation, on compact groups.

  9. Functional Analysis for Chemical Engineers.

    Science.gov (United States)

    Ramkrishna, D.

    1979-01-01

    Described is a graduate level engineering course on functional analysis offered at Purdue University. The course restricts itself to linear problems, specifically analysis of linear operators on vector spaces. Key applications in the course demonstrating the utility of abstract formulations are presented. (BT)

  10. Genome-Wide Identification of Differentially Expressed Genes Associated with the High Yielding of Oleoresin in Secondary Xylem of Masson Pine (Pinus massoniana Lamb by Transcriptomic Analysis.

    Directory of Open Access Journals (Sweden)

    Qinghua Liu

    Full Text Available Masson pine is an important timber and resource for oleoresin in South China. Increasing yield of oleoresin in stems can raise economic benefits and enhance the resistance to bark beetles. However, the genetic mechanisms for regulating the yield of oleoresin were still unknown. Here, high-throughput sequencing technology was used to investigate the transcriptome and compare the gene expression profiles of high and low oleoresin-yielding genotypes. A total of 40,690,540 reads were obtained and assembled into 137,499 transcripts from the secondary xylem tissues. We identified 84,842 candidate unigenes based on sequence annotation using various databases and 96 unigenes were candidates for terpenoid backbone biosynthesis in pine. By comparing the expression profiles of high and low oleoresin-yielding genotypes, 649 differentially expressed genes (DEGs were identified. GO enrichment analysis of DEGs revealed that multiple pathways were related to high yield of oleoresin. Nine candidate genes were validated by QPCR analysis. Among them, the candidate genes encoding geranylgeranyl diphosphate synthase (GGPS and (--alpha/beta-pinene synthase were up-regulated in the high oleoresin-yielding genotype, while tricyclene synthase revealed lower expression level, which was in good agreement with the GC/MS result. In addition, DEG encoding ABC transporters, pathogenesis-related proteins (PR5 and PR9, phosphomethylpyrimidine synthase, non-specific lipid-transfer protein-like protein and ethylene responsive transcription factors (ERFs were also confirmed to be critical for the biosynthesis of oleoresin. The next-generation sequencing strategy used in this study has proven to be a powerful means for analyzing transcriptome variation related to the yield of oleoresin in masson pine. The candidate genes encoding GGPS, (--alpha/beta-pinene, tricyclene synthase, ABC transporters, non-specific lipid-transfer protein-like protein, phosphomethylpyrimidine synthase

  11. Functional and shape data analysis

    CERN Document Server

    Srivastava, Anuj

    2016-01-01

    This textbook for courses on function data analysis and shape data analysis describes how to define, compare, and mathematically represent shapes, with a focus on statistical modeling and inference. It is aimed at graduate students in analysis in statistics, engineering, applied mathematics, neuroscience, biology, bioinformatics, and other related areas. The interdisciplinary nature of the broad range of ideas covered—from introductory theory to algorithmic implementations and some statistical case studies—is meant to familiarize graduate students with an array of tools that are relevant in developing computational solutions for shape and related analyses. These tools, gleaned from geometry, algebra, statistics, and computational science, are traditionally scattered across different courses, departments, and disciplines; Functional and Shape Data Analysis offers a unified, comprehensive solution by integrating the registration problem into shape analysis, better preparing graduate students for handling fu...

  12. Hurricane Katrina winds damaged longleaf pine less than loblolly pine

    Science.gov (United States)

    Kurt H. Johnsen; John R. Butnor; John S. Kush; Ronald C. Schmidtling; C. Dana. Nelson

    2009-01-01

    Some evidence suggests that longleaf pine might be more tolerant of high winds than either slash pine (Pinus elliotii Englem.) or loblolly pine (Pinus taeda L.). We studied wind damage to these three pine species in a common garden experiment in southeast Mississippi following Hurricane Katrina,...

  13. Comparative analysis of two phenologically divergent populations of the pine processionary moth (Thaumetopoea pityocampa) by de novo transcriptome sequencing.

    Science.gov (United States)

    Gschloessl, Bernhard; Vogel, Heiko; Burban, Christian; Heckel, David; Streiff, Réjane; Kerdelhué, Carole

    2014-03-01

    The pine processionary moth Thaumetopoea pityocampa is a Mediterranean lepidopteran defoliator that experiences a rapid range expansion towards higher latitudes and altitudes due to the current climate warming. Its phenology - the time of sexual reproduction - is certainly a key trait for the local adaptation of the processionary moth to climatic conditions. Moreover, an exceptional case of allochronic differentiation was discovered ca. 15 years ago in this species. A population with a shifted phenology (the summer population, SP) co-exists near Leiria, Portugal, with a population following the classical cycle (the winter population, WP). The existence of this population is an outstanding opportunity to decipher the genetic bases of phenology. No genomic resources were so far available for T. pityocampa. We developed a high-throughput sequencing approach to build a first reference transcriptome, and to proceed with comparative analyses of the sympatric SP and WP. We pooled RNA extracted from whole individuals of various developmental stages, and performed a transcriptome characterisation for both populations combining Roche 454-FLX and traditional Sanger data. The obtained sequences were clustered into ca. 12,000 transcripts corresponding to 9265 unigenes. The mean transcript coverage was 21.9 reads per bp. Almost 70% of the de novo assembled transcripts displayed significant similarity to previously published proteins and around 50% of the transcripts contained a full-length coding region. Comparative analyses of the population transcriptomes allowed to investigate genes specifically expressed in one of the studied populations only, and to identify the most divergent homologous SP/WP transcripts. The most divergent pairs of transcripts did not correspond to obvious phenology-related candidate genes, and 43% could not be functionally annotated. This study provides the first comprehensive genome-wide resource for the target species T. pityocampa. Many of the

  14. Structured Functional Principal Component Analysis

    Science.gov (United States)

    Shou, Haochang; Zipunnikov, Vadim; Crainiceanu, Ciprian M.; Greven, Sonja

    2015-01-01

    Summary Motivated by modern observational studies, we introduce a class of functional models that expand nested and crossed designs. These models account for the natural inheritance of the correlation structures from sampling designs in studies where the fundamental unit is a function or image. Inference is based on functional quadratics and their relationship with the underlying covariance structure of the latent processes. A computationally fast and scalable estimation procedure is developed for high-dimensional data. Methods are used in applications including high-frequency accelerometer data for daily activity, pitch linguistic data for phonetic analysis, and EEG data for studying electrical brain activity during sleep. PMID:25327216

  15. Sugar pine and its hybrids

    Science.gov (United States)

    W. B. Critchfield; B. B. Kinloch

    1986-01-01

    Unlike most white pines, sugar pine (Pinus lambertiana) is severely restricted in its ability to hybridize with other species. It has not been successfully crossed with any other North American white pine, nor with those Eurasian white pines it most closely resembles. Crosses with the dissimilar P. koraiensis and P....

  16. Special functions in Fuzzy Analysis

    Directory of Open Access Journals (Sweden)

    Angel Garrido

    2006-01-01

    Full Text Available In the treatment of Fuzzy Logic an useful tool appears: the membership function, with the information about the degree of completion of a condition which defines the respective Fuzzy Set or Fuzzy Relation. With their introduction, it is possible to prove some results on the foundations of Fuzzy Logic and open new ways in Fuzzy Analysis.

  17. Fifteen papers on functional analysis

    CERN Document Server

    Allakhverdiev, B P; Fainshtein, A S; Khelemskii, AYa; Klenina, LI

    1984-01-01

    The papers in this volume cover topics on functional analysis. They have been selected, translated, and edited from publications not otherwise translated into English under the auspices of the AMS-ASL-IMS Committee on Translations from Russian and Other Foreign Languages.

  18. Function analysis of unknown genes

    DEFF Research Database (Denmark)

    Rogowska-Wrzesinska, A.

    2002-01-01

      This thesis entitled "Function analysis of unknown genes" presents the use of proteome analysis for the characterisation of yeast (Saccharomyces cerevisiae) genes and their products (proteins especially those of unknown function). This study illustrates that proteome analysis can be used...... to describe different aspects of molecular biology of the cell, to study changes that occur in the cell due to overexpression or deletion of a gene and to identify various protein modifications. The biological questions and the results of the described studies show the diversity of the information that can...... genes and proteins. It reports the first global proteome database collecting 36 yeast single gene deletion mutants and selecting over 650 differences between analysed mutants and the wild type strain. The obtained results show that two-dimensional gel electrophoresis and mass spectrometry based proteome...

  19. Has Virginia pine declined? The use of Forest Health Monitoring and other information in the determination

    Science.gov (United States)

    William G. Burkman; William A. Bechtold

    2000-01-01

    This paper examines the current status of Virginia pine, focusing on Forest Health Monitoring (FHM) results and using Forest Inventory and Analysis (FIA) information to determine if Virginia pine is showing a decline. An examination of crown condition data from live trees in the FHM program from 1991 through 1997 showed that Virginia pine had significantly...

  20. Parametric functional principal component analysis.

    Science.gov (United States)

    Sang, Peijun; Wang, Liangliang; Cao, Jiguo

    2017-03-10

    Functional principal component analysis (FPCA) is a popular approach in functional data analysis to explore major sources of variation in a sample of random curves. These major sources of variation are represented by functional principal components (FPCs). Most existing FPCA approaches use a set of flexible basis functions such as B-spline basis to represent the FPCs, and control the smoothness of the FPCs by adding roughness penalties. However, the flexible representations pose difficulties for users to understand and interpret the FPCs. In this article, we consider a variety of applications of FPCA and find that, in many situations, the shapes of top FPCs are simple enough to be approximated using simple parametric functions. We propose a parametric approach to estimate the top FPCs to enhance their interpretability for users. Our parametric approach can also circumvent the smoothing parameter selecting process in conventional nonparametric FPCA methods. In addition, our simulation study shows that the proposed parametric FPCA is more robust when outlier curves exist. The parametric FPCA method is demonstrated by analyzing several datasets from a variety of applications. © 2017, The International Biometric Society.

  1. EVENT PLANNING USING FUNCTION ANALYSIS

    Energy Technology Data Exchange (ETDEWEB)

    Lori Braase; Jodi Grgich

    2011-06-01

    Event planning is expensive and resource intensive. Function analysis provides a solid foundation for comprehensive event planning (e.g., workshops, conferences, symposiums, or meetings). It has been used at Idaho National Laboratory (INL) to successfully plan events and capture lessons learned, and played a significant role in the development and implementation of the “INL Guide for Hosting an Event.” Using a guide and a functional approach to planning utilizes resources more efficiently and reduces errors that could be distracting or detrimental to an event. This integrated approach to logistics and program planning – with the primary focus on the participant – gives us the edge.

  2. Cephalometric analysis for functional occlusion

    Directory of Open Access Journals (Sweden)

    Ashok Karad

    2016-01-01

    Full Text Available Background: Various elements contributing to good functional occlusion have not been clearly assessed with cephalometrics for the diagnosis of functional problems and their application in clinical practice. The aim of this study, therefore, was to analyze different components of functional occlusion to formulate concise functional cephalometric analysis. Materials and Methods: Eighty-two cases (38 males and 44 females, with class I occlusion and balanced facial profile, were examined based on the selection criteria, and cephalograms were taken in natural head position. All the radiographs were then analyzed using various functional parameters. Results: The mean values of condylar path angle and incisal path angle were 55.83° and 65.67°, respectively, with large deviations. However, both showed positive correlation. The value of the angle of long axis of mandibular incisor with respect to the line joining center of condyle and lower incisor tip was 88.04°. Moreover, the angle between the occlusal plane and horizontal plane was 12.88°. In vertical plane, lower face height (LFH was found to be slightly less than the upper face height. Maxilla contributed around 45% of the LFH while mandible formed about 60%. Furthermore, upper alveolar component (maxillary alveolar height formed more than half of the maxilla (53.79% whereas lower alveolar component (mandibular alveolar height was 74.8% of the mandible. Conclusion: This study has analyzed various components of functional occlusion and formulated a concise functional cephalometric analysis for diagnosis, treatment planning, and assessment of treatment results.

  3. Growth of pine ecosystems as a function of climate and pollution load. A regional case study; Wachstum von Kiefern-Oekosystemen in Abhaengigkeit von Klima und Stoffeintrag. Eine regionale Fallstudie auf Landschaftsebene

    Energy Technology Data Exchange (ETDEWEB)

    Erhard, M.

    1999-12-01

    An analysis on landscape level was performed to investigate the growth of Scots pine stands (Pinus sylvestris L.) in the research area of 'Duebener Heide' under the impact of rapidly changing pollution loads and to evaluate their further development. Central to the work was a spatial database, installed using a geographic information system (GIS). This database enabled the statistical analysis of relationships and correlations between the growth of the pine stands, the influence of pollution impacts and the natural site characteristics. The results of emission and immission modelling gave detailed evaluation of the pollution load over the investigated area. The spatial information database was linked with a process-based growth model called FORSANA. The resulting regional model was used to simulate forest growth on stand level for variable time periods. The plausibility of the simulation results of the model was checked for the influence of different patterns of pollution using the data available for the investigated area. Simulation runs were also made with these data to estimate the further development of the pine stand under various climate and emission scenarios. (orig.)

  4. Analysis of energy wood supply chain in thinning operations: a case study in a pine stand of Central Italy

    Directory of Open Access Journals (Sweden)

    Baldini S

    2010-10-01

    Full Text Available Thinning is an essential practice in Mediterranean pine forests management but is rarely applied because of the high harvesting costs. The new market of bioenergy products could give a profit to wood biomass harvesting activities, though the drawbacks of elevated supply chain costs, related to technical problems and lack of knowledge about the wood quality have to be overcome in advance. This study analyzed technical, economic, energy and environmental factors of a pine stand thinning in Central Italy, where collected biomass was directed to energy, in order to give a decisional support to reach economical profitability and environmental sustainability in thinning practices. The introduction of Full Tree System maximized the recovery of available biomass, full tree chipping produced material with Heating Value superior than single tree components. The use of a felling frame in motor-manual felling in comparison with the traditional chainsaw reduced operator effort, increasing the number of felled trees per hour, when the stump diameter remained under 15 cm. The energy wood supply chain is not sustainable from an economic point of view, the profitability could be reached only acting on suggested technical levers and particularly reducing costs of hauling operation. The estimation of output/input energy ratio in the supply chain underlined the feasibility of thinning practices for energy. The assessment of CO2 emissions confirmed the environmental sustainability of biomass supply chain in energy when compared to traditional fossil fuels. Study conclusions provide the guidelines for thinning treatment in Mediterranean pine stands, in order to reach environmental and economic sustainability of these practices.

  5. Functional analysis theory and applications

    CERN Document Server

    Edwards, RE

    2011-01-01

    ""The book contains an enormous amount of information - mathematical, bibliographical and historical - interwoven with some outstanding heuristic discussions."" - Mathematical Reviews.In this massive graduate-level study, Emeritus Professor Edwards (Australian National University, Canberra) presents a balanced account of both the abstract theory and the applications of linear functional analysis. Written for readers with a basic knowledge of set theory, general topology, and vector spaces, the book includes an abundance of carefully chosen illustrative examples and excellent exercises at the

  6. PINE -- Electronic mail interface

    Science.gov (United States)

    Mellor, G. R.

    The PINE mail interface is a user-friendly mail utility for Unix systems. It has been adopted by Starlink as the recommended mail utility because of its ease of use compared with the mail utilities supplied as standard with the Unix operating system. PINE is intended to be intuitive and "to be learned by exploration rather than reading manuals". Here however are a few brief notes to get you started.

  7. Growth Response of Silver Fir and Bosnian Pine from Kosovo

    Directory of Open Access Journals (Sweden)

    Elvin Toromani

    2010-06-01

    Full Text Available Background and Purpose: This paper explore the growth-climate relationships in total ring width chronologies of silver fir (Abies alba Mill. and Bosnian pine (Pinus heldreichii Christ. The objective of this study is to quantify the climate influence on radial growth of both species. The relationships between climate and ring widths were analyzed using extreme growing years (called pointer years, simple correlations and response functions analysis (bootstrapped coefficients. The objectives of this study were: (1 to define the pattern of climatic response of each species, (2 to highlight the influence of local ecological conditions on tree's growth, and (3 to compare the response of silver fir and Bosnian pine to climate. Responses of total ring width to climate were estimated by establishing the mean relationship between growth and climate through simple correlations analysis and bootstrapped response functions. The response to climatic variability was also assessed by analyzing pointer years which correspond to abrupt changes in growth pattern and revealing the tree-growth response to extreme climatic events. For the period 1908-2008 the mean sensitivity (MS of total ring width chronology for Bosnian pine (0.209 was higher than silver fir (0.169 suggesting that Bosnian pine is more sensitive to climate (pointer years were more frequent in ring width chronology of Bosnian pine than in silver fir ring width chronology. The high values of first-order autocorrelations for Bosnian pine (0.674 indicated a strong dependence of current growth on the previous year’s growth. Pointer years analysis underlined the high sensitivity to spring temperatures and precipitation for both species. Radial growth for both species depends strongly on spring climate variables (temperatures and precipitation which play a significant role particularly for earlywood production. Material and Methods: We selected 12 silver fir trees and 15 Bosnian pine trees and took two 5

  8. Topics in nonlinear functional analysis

    CERN Document Server

    Nirenberg, Louis

    2001-01-01

    Since its first appearance as a set of lecture notes published by the Courant Institute in 1974, this book served as an introduction to various subjects in nonlinear functional analysis. The current edition is a reprint of these notes, with added bibliographic references. Topological and analytic methods are developed for treating nonlinear ordinary and partial differential equations. The first two chapters of the book introduce the notion of topological degree and develop its basic properties. These properties are used in later chapters in the discussion of bifurcation theory (the possible br

  9. Warped functional analysis of variance.

    Science.gov (United States)

    Gervini, Daniel; Carter, Patrick A

    2014-09-01

    This article presents an Analysis of Variance model for functional data that explicitly incorporates phase variability through a time-warping component, allowing for a unified approach to estimation and inference in presence of amplitude and time variability. The focus is on single-random-factor models but the approach can be easily generalized to more complex ANOVA models. The behavior of the estimators is studied by simulation, and an application to the analysis of growth curves of flour beetles is presented. Although the model assumes a smooth latent process behind the observed trajectories, smootheness of the observed data is not required; the method can be applied to irregular time grids, which are common in longitudinal studies.

  10. Growth of longleaf and loblolly pine planted on South Carolina Sandhill sites.

    Energy Technology Data Exchange (ETDEWEB)

    Cram, Michelle, M.; Outcalt, Kenneth, W.; Zarnoch, Stanley, J.

    2010-07-01

    Performance of longleaf (Pinus palustris Mill.) and loblolly pine (P. taeda L.) were compared 15–19 years after outplanting on 10 different sites in the sandhillsof South Carolina. The study was established from 1988 to 1992 with bareroot seedlings artificially inoculated with Pisolithus tinctorius (Pt) or naturally inoculated with mycorrhizae in the nursery. A containerized longleaf pine treatment with and without Pt inoculation was added to two sites in 1992. Effects of the Pt nursery treatment were mixed, with a decrease in survival of bareroot longleaf pine on two sites and an increase in survival on another site. The containerized longleaf pine treatment substantially increased survival, which led to greater volume compared with bareroot longleaf pine. Loblolly pine yielded more volume than longleaf pine on all sites but one, where survival was negatively affected by fire. Depth of sandy surface horizon affected mean annual height growth of both loblolly and longleaf pine. Height growth per year decreased with an increase in sand depth for both species. Multiple regression analysis of volume growth(ft3/ac per year) for both species indicated a strong relationship to depth of sandy soil and survival. After 15–19 years, loblolly pine has been more productive than longleaf pine, although longleaf pine productivity may be equal to or greater than that of loblolly pine on the soils with the deepest sandy surface layers over longer rotations.

  11. Impact of pine needle leachates from a mountain pine beetle infested watershed on groundwater geochemistry

    Science.gov (United States)

    Pryhoda, M.; Sitchler, A.; Dickenson, E.

    2013-12-01

    The mountain pine beetle (MPB) epidemic in the northwestern United States is a recent indicator of climate change; having an impact on the lodgepole pine forest ecosystem productivity. Pine needle color can be used to predict the stage of a MPB infestation, as they change color from a healthy green, to red, to gray as the tree dies. Physical processes including precipitation and snowfall can cause leaching of pine needles in all infestation stages. Understanding the evolution of leachate chemistry through the stages of MPB infestation will allow for better prediction of the impact of MPBs on groundwater geochemistry, including a potential increase in soil metal mobilization and potential increases in disinfection byproduct precursor compounds. This study uses batch experiments to determine the leachate chemistry of pine needles from trees in four stages of MPB infestation from Summit County, CO, a watershed currently experiencing the MPB epidemic. Each stage of pine needles undergoes four subsequent leach periods in temperature-controlled DI water. The subsequent leaching method adds to the experiment by determining how leachate chemistry of each stage changes in relation to contact time with water. The leachate is analyzed for total organic carbon. Individual organic compounds present in the leachate are analyzed by UV absorption spectra, fluorescence spectrometry, high-pressure liquid chromatography for organic acid analysis, and size exclusion chromatography. Leachate chemistry results will be used to create a numerical model simulating reactions of the leachate with soil as it flows through to groundwater during precipitation and snowfall events.

  12. Occupational Functionality: A Concept Analysis.

    Science.gov (United States)

    Combs, Bryan; Heaton, Karen

    2016-08-01

    Occupational health nursing has evolved since the late 19th century and, with the inclusion of advanced practice nursing, has become essential to the health and safety of workers. A key component of the knowledge required of advanced practice occupational health nurses is an understanding of what it means for workers to be fit for duty The definition or concept of being fit for duty varies depending on the point-of-view of the health care provider. Health care providers across all professions must have a consistent understanding of what it means to be fit for duty Literature shows that professions and specialties that often collaborate have varying ideas about what it means to be fit for duty These differences highlight the need for a consistent concept that can be used across professions, is holistic, and incorporates other concepts critical to all points of view. To better understand fit for duty, a concept analysis, using the Walker and Avant framework, focused on the concept of occupational functionality (OF). Occupational functionality is best defined as the qualities of being suited to serve an occupational purpose efficiently and effectively within the physical, occupational, environmental, and psychological demands of a unique work setting. This concept analysis offers an initial step in understanding fit for duty and gives health care providers a concept that can be used across disciplines.

  13. Identification of the Botanical Origin of Commercial Pine Nuts Responsible for Dysgeusia by Gas-Liquid Chromatography Analysis of Fatty Acid Profile

    Directory of Open Access Journals (Sweden)

    Frédéric Destaillats

    2011-01-01

    Full Text Available Over the last 10 years, complaints were increasingly reported from consumers that experienced dysgeusia following the consumption of pine nuts. In the present study, pine nuts samples (N = 16 from consumers that reported dysgeusia have been analyzed to identify the botanical origin of critical pine nuts samples. The fatty acid composition of the samples was performed, and diagnostic index values were used to identify the botanical origin of the samples. Pinus armandii nuts were identified in all the samples pure or in mixture with P. koraiensis nuts. P. armandii is not reported as edible pine nuts by the Food and Agriculture Organization (FAO. This study confirmed that consumption of P. armandii nuts may lead to dysgeusia. Based on the present study and previous work, we advise import companies to trade pine nuts from traditionally recognized species such as P. pinea, P. sibirica, P. koraiensis, or P. gerardiana.

  14. Identification of the botanical origin of commercial pine nuts responsible for dysgeusia by gas-liquid chromatography analysis of Fatty Acid profile.

    Science.gov (United States)

    Destaillats, Frédéric; Cruz-Hernandez, Cristina; Giuffrida, Francesca; Dionisi, Fabiola; Mostin, Martine; Verstegen, Geert

    2011-01-01

    Over the last 10 years, complaints were increasingly reported from consumers that experienced dysgeusia following the consumption of pine nuts. In the present study, pine nuts samples (N = 16) from consumers that reported dysgeusia have been analyzed to identify the botanical origin of critical pine nuts samples. The fatty acid composition of the samples was performed, and diagnostic index values were used to identify the botanical origin of the samples. Pinus armandii nuts were identified in all the samples pure or in mixture with P. koraiensis nuts. P. armandii is not reported as edible pine nuts by the Food and Agriculture Organization (FAO). This study confirmed that consumption of P. armandii nuts may lead to dysgeusia. Based on the present study and previous work, we advise import companies to trade pine nuts from traditionally recognized species such as P. pinea, P. sibirica, P. koraiensis, or P. gerardiana.

  15. Physicochemical and Sensory Properties of Whey Cheese with Pine Nuts

    Directory of Open Access Journals (Sweden)

    Cristina Anamaria Semeniuc

    2015-11-01

    Full Text Available This study aimed to develop a value-added whey cheese through addition of pine nuts. Therefore, different concentrations of pine nuts [2, 4, 6 and 8% (w/w] were added to whey cheese. The study was designed to evaluate the influence of pine nuts on physicochemical and sensory properties of whey cheese. The addition of pine nuts resulted in an increase in fat content and total solids and a decrease in moisture content. However, no statistically significant difference was found in pH values. Sensory analysis was performed using the 9-point hedonic scale, with selected assessors. The whey cheese sample with 4% pine nuts was the most appreciated (7.6 points, followed by the classic whey cheese, whey cheese with 6 and 8% pine nuts (7.4 points, and whey cheese with 2% pine nuts (7.3 points. Nevertheless, the sensory characteristics of whey cheese were not significantly influenced by the addition of pine nuts. Whey cheese sensory profiling was successful in differential characterization of whey cheese samples.

  16. Experimental Analysis of a Producer Gas Generated by a Chir Pine Needle (Leaf in a Downdraft Biomass Gasifier

    Directory of Open Access Journals (Sweden)

    Mr. Akhilesh Kumar

    2014-10-01

    Full Text Available Today’s Indian scenario is facing an unprecedented energy crisis as the conventional energy resources of India are consistently deteriorating with the limited stock of these natural minerals posing a staggering threat to the Indian economy. Among all the available resources biomass proves to be a satisfactory substitute for compensating the energy void due to these natural resources. Biomass is a renewable resource with almost zero net CO2 emission which is processed with the help of biomass gasifier which is concurrently used with a chir pine needle. The performance of the biomass gasifier system is evaluated in terms of equivalence ratio, producer gas composition, calorific value of the producer gas, gas production rate and cold gas efficiency. The experimental results are compared with those reported in the literature.

  17. Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

    Science.gov (United States)

    Liu, Jun-Jun; Sniezko, Richard A; Zamany, Arezoo; Williams, Holly; Wang, Ning; Kegley, Angelia; Savin, Douglas P; Chen, Hao; Sturrock, Rona N

    2017-02-07

    Molecular breeding incorporates efficient tools to increase rust resistance in five-needle pines. Susceptibility of native five-needle pines to white pine blister rust (WPBR), caused by the non-native invasive fungus Cronartium ribicola (J.C. Fisch.), has significantly reduced wild populations of these conifers in North America. Major resistance (R) genes against specific avirulent pathotypes have been found in several five-needle pine species. In this study, we screened genic SNP markers by comparative transcriptome and genetic association analyses and constructed saturated linkage maps for the western white pine (Pinus monticola) R locus (Cr2). Phenotypic segregation was measured by a hypersensitive reaction (HR)-like response on the needles and disease symptoms of cankered stems post inoculation by the C. ribicola avcr2 race. SNP genotypes were determined by HRM- and TaqMan-based SNP genotyping. Saturated maps of the Cr2-linkage group (LG) were constructed in three seed families using a total of 34 SNP markers within 21 unique genes. Cr2 was consistently flanked by contig_2142 (encoding a ruvb-like protein) and contig_3772 (encoding a delta-fatty acid desaturase) across the three seed families. Cr2 was anchored to the Pinus consensus LG-1, which differs from LGs where other R loci of Pinus species were mapped. GO annotation identified a set of NBS-LRR and other resistance-related genes as R candidates in the Cr2 region. Association of one nonsynonymous SNP locus of an NBS-LRR gene with Cr2-mediated phenotypes provides a valuable tool for marker-assisted selection (MAS), which will shorten the breeding cycle of resistance screening and aid in the restoration of WPBR-disturbed forest ecosystems.

  18. Interpopulation genetic-ecological variation of Scots pine (Pinus sylvestris L. in Serbia

    Directory of Open Access Journals (Sweden)

    Lučić Aleksandar

    2011-01-01

    Full Text Available The genetic-ecological variation of Scots pine (Pinus sylvestris L. in Serbia was studied in the populations at five localities in western and south-western Serbia. Three groups of Scots pine (Pinus sylvestris L. populations were differentiated based on genetic research (seed protein analysis and plant community research. The first group consists of Scots pine populations on Šargan (FMU “Šargan“ and on Tara (FMU “Kaluderske Bare”, where the forests belong to the community of Scots pine and Austrian pine (Pinetum sylvestris-nigrae Pavlovic 1951. The second group covers the localities Stolovi (FMU “Radocelo-Crepuljnik“ and Zlatar (FMU “Zlatar I“, where the forests belong to the community of Scots pine and spruce (Piceo abietis-Pinetum sylvestris Stefanovic 1960. The third group comprises the Scots pine population on Pešter (FMU “Dubocica-Bare“ which belongs to the community of Scots pine with erica (Erico-Pinetum sylvestris Stefanovic 1963. Cluster analysis was performed on the basis of seed protein data and showed that there are three groups of Scots pine populations. The three populations coincide with plant communities. The community of Scots pine with erica (Erico-Pinetum sylvestris Stefanovic 1963 recorded on Pešter at the locality “Dubocica- Bare“ in the area of FE “Golija“ Ivanjica, is a special Scots pine population displayed at the greatest distance from all other populations in the cluster analysis dendrogram.

  19. Extracting DNA from submerged pine wood.

    Science.gov (United States)

    Reynolds, M Megan; Williams, Claire G

    2004-10-01

    A DNA extraction protocol for submerged pine logs was developed with the following properties: (i) high molecular weight DNA, (ii) PCR amplification of chloroplast and nuclear sequences, and (iii) high sequence homology to voucher pine specimens. The DNA extraction protocol was modified from a cetyltrimehtylammonium bromide (CTAB) protocol by adding stringent electrophoretic purification, proteinase K, RNAse, polyvinyl pyrrolidone (PVP), and Gene Releaser. Chloroplast rbcL (ribulose-1,5-bisphosphate carboxylase) could be amplified. Nuclear ribosomal sequences had >95% homology to Pinus taeda and Pinus palustris. Microsatellite polymorphism for PtTX2082 matched 2 of 14 known P. taeda alleles. Our results show DNA analysis for submerged conifer wood is feasible.

  20. Pine nut allergy in perspective.

    Science.gov (United States)

    Falliers, C J

    1989-03-01

    Anaphylaxis and other acute allergic reactions following the ingestion of pine--or pinon--nuts are documented and reviewed in perspective. Systemic allergic reactions to other relatively uncommon or "exotic" foods are also considered. Although hypersensitivity to more than one type of "nuts" is reported by some individuals, no significant cross-reactivity between any of these, or between pine pollen, pine resin, and pine nuts has been demonstrated.

  1. Functional Analysis: Entering Hilbert Space

    DEFF Research Database (Denmark)

    Hansen, Vagn Lundsgaard

    In the second edition, I have expanded the material on normed vector spaces and their operators presented in Chapter 1 to include proofs of the Open Map-ping Theorem, the Closed Graph Theorem and the Hahn-Banach The orem. The material on operators between normed vector spaces is further expanded...... of the new material on normed vector spaces and their operators, the book can hopefully serve as a general introduction to functional analysis viewed as a theory of infinite dimensional linear spaces and linear operators acting on them....... in a new chapter on Fredholm theory (Chapter 6). Fredholm theory originates in pioneering work of the Swedish mathematician Erik Ivar Fred-holm on integral equations, which inspired the study of a new class of bounded linear operators, known as Fredholm operators. Chapter 6 presents the basic elements...

  2. Functional Analysis in Applied Mathematics and Engineering

    DEFF Research Database (Denmark)

    Pedersen, Michael

    1997-01-01

    Lecture notes for the course 01245 Functional Analysis. Consists of the first part of amonograph with the same title.......Lecture notes for the course 01245 Functional Analysis. Consists of the first part of amonograph with the same title....

  3. Tolerancing analysis and functional requirement

    CERN Document Server

    Petit, Jean-Philippe

    2010-01-01

    The aim of this paper is to show through a simple assembly a method of tolerancing analysis (coherent with GPS) developed at LM\\'ecA and based on the model of clearance and deviation domains. Tolerancing is an important step in the product design because on it will depend the functionality of the mechanism its assemblibility but also its cost: manufacturing cost increases with the precision of tolerances values. In our model, each feature specification is translated into tolerance zone. This zone limits displacements of the toleranced feature. Limitations of this small displacements are expressed in a mathematical form by a 6-polytope in a 6 dimensions space (3 rotations and 3 translations). In the same way, contact conditions in joints allow to write linear inequalities which can be translated by 6-polytopes. Each domain is defined by a set of vertices and a system of inequalities. Considering a chosen tolerancing, the method allows to verify the mechanism assemblibility but also several functional requireme...

  4. Interpretable functional principal component analysis.

    Science.gov (United States)

    Lin, Zhenhua; Wang, Liangliang; Cao, Jiguo

    2016-09-01

    Functional principal component analysis (FPCA) is a popular approach to explore major sources of variation in a sample of random curves. These major sources of variation are represented by functional principal components (FPCs). The intervals where the values of FPCs are significant are interpreted as where sample curves have major variations. However, these intervals are often hard for naïve users to identify, because of the vague definition of "significant values". In this article, we develop a novel penalty-based method to derive FPCs that are only nonzero precisely in the intervals where the values of FPCs are significant, whence the derived FPCs possess better interpretability than the FPCs derived from existing methods. To compute the proposed FPCs, we devise an efficient algorithm based on projection deflation techniques. We show that the proposed interpretable FPCs are strongly consistent and asymptotically normal under mild conditions. Simulation studies confirm that with a competitive performance in explaining variations of sample curves, the proposed FPCs are more interpretable than the traditional counterparts. This advantage is demonstrated by analyzing two real datasets, namely, electroencephalography data and Canadian weather data.

  5. Whitebark pine mortality related to white pine blister rust, mountain pine beetle outbreak, and water availability

    Science.gov (United States)

    Shanahan, Erin; Irvine, Kathryn M.; Thoma, David P.; Wilmoth, Siri K.; Ray, Andrew; Legg, Kristin; Shovic, Henry

    2016-01-01

    Whitebark pine (Pinus albicaulis) forests in the western United States have been adversely affected by an exotic pathogen (Cronartium ribicola, causal agent of white pine blister rust), insect outbreaks (Dendroctonus ponderosae, mountain pine beetle), and drought. We monitored individual trees from 2004 to 2013 and characterized stand-level biophysical conditions through a mountain pine beetle epidemic in the Greater Yellowstone Ecosystem. Specifically, we investigated associations between tree-level variables (duration and location of white pine blister rust infection, presence of mountain pine beetle, tree size, and potential interactions) with observations of individual whitebark pine tree mortality. Climate summaries indicated that cumulative growing degree days in years 2006–2008 likely contributed to a regionwide outbreak of mountain pine beetle prior to the observed peak in whitebark mortality in 2009. We show that larger whitebark pine trees were preferentially attacked and killed by mountain pine beetle and resulted in a regionwide shift to smaller size class trees. In addition, we found evidence that smaller size class trees with white pine blister rust infection experienced higher mortality than larger trees. This latter finding suggests that in the coming decades white pine blister rust may become the most probable cause of whitebark pine mortality. Our findings offered no evidence of an interactive effect of mountain pine beetle and white pine blister rust infection on whitebark pine mortality in the Greater Yellowstone Ecosystem. Interestingly, the probability of mortality was lower for larger trees attacked by mountain pine beetle in stands with higher evapotranspiration. Because evapotranspiration varies with climate and topoedaphic conditions across the region, we discuss the potential to use this improved understanding of biophysical influences on mortality to identify microrefugia that might contribute to successful whitebark pine conservation

  6. Functional Analysis and Treatment of Nail Biting

    Science.gov (United States)

    Dufrene, Brad A.; Watson, T. Steuart; Kazmerski, Jennifer S.

    2008-01-01

    This study applied functional analysis methodology to nail biting exhibited by a 24-year-old female graduate student. Results from the brief functional analysis indicated variability in nail biting across assessment conditions. Functional analysis data were then used to guide treatment development and implementation. Treatment included a…

  7. Functional 2D Procrustes Shape Analysis

    DEFF Research Database (Denmark)

    Larsen, Rasmus

    2005-01-01

    Using a landmark based approach to Procrustes alignment neglects the functional nature of outlines and surfaces. In order to re-introduce this functional nature into the analysis we will consider alignment of shapes with functional representations. First functional Procrustes analysis of curve sh...

  8. Study on Functional Properties of Chilgoza Pine Nut Protein Extracted by Ultrasonic- Assisted Ultrafiltration%巴西松籽蛋白超声辅助超滤提取工艺及功能特性研究

    Institute of Scientific and Technical Information of China (English)

    蔡路昀; 刘长虹; 曹爱玲; 应铁进

    2012-01-01

    In this study in order to increase the extraction efficiency and functional properties of Chilgoza pine nut protein, prepared by ultrasonic - assisted extraction and ultrafiltration in combination with response surface methodology were analyzed in comparison with the protein obtained by traditional extraction. The extraction efficiency and functional properties of pine nut protein was significantly improved by the ultrasonic - assisted extraction and ultrafiltration method. The optimum extraction condition was as follows:ultrasonic temperature 43 ℃ ,pH value 9,ultrasonic power 400 W,ultrasonic treatment time 38 min, solid/liquid ratio 1 :35,the extraction efficiency was 77.94%. Functional properties (bulk density, emulsifying capacity, foaming capacity and foam stability ) of pine nut protein obtained by ultrafiltration were found to be better than that of traditionally extracted protein and some of other plant proteins. The results of this study indicated pine nut protein as an available plant protein source could be widely applied in food industry.%为了提高巴西松籽蛋白提取效率和功能特性,采用超声辅助超滤提取工艺结合响应面分析,并与传统提取工艺松籽蛋白进行比较.结果显示:超声辅助超滤提取工艺可以显著提高松籽蛋白的得率和功能特性,其中最佳提取条件是:超声温度43℃,pH值9,超声功率400W,超声时间38min,料液比1∶35,提取效率为77.94%,同时超滤提取的松籽蛋白在容积密度,乳化性,起泡能力和起泡稳定性等功能特性上都要优于传统提取的松籽蛋白及部分植物蛋白.这些结果表明,松籽蛋白作为可利用的植物蛋白来源可以广泛应用于食品工业中.

  9. Identification of the botanical origin of pine nuts found in food products by gas-liquid chromatography analysis of fatty acid profile.

    Science.gov (United States)

    Destaillats, Frédéric; Cruz-Hernandez, Cristina; Giuffrida, Francesca; Dionisi, Fabiola

    2010-02-24

    Pine nuts are traditionally used in various part of the world for the preparation of desserts or sauces or in salads. Local production is not sufficient to cope with the high demand of pine nuts around the world, and countries such as China or Pakistan are exporting much of their production to Western countries. Almost all the nuts that are traditionally consumed belong to the Pinus genus, but over the past years, the number of consumer complaints following consumption of commercial pine nuts increased. Some consumers experienced taste disturbance lasting for up to two weeks after consumption. Food safety agencies raised some concerns regarding pine nuts imported from Asia and their association with taste disturbance. However, even though a formal association has not been found to date, the Pinus genus comprises species that are not classified as edible and could be eventually used to adulterate edible species. Pinus spp. seed lipids are known to contain very specific polyunsaturated fatty acids know as Delta5-olefinic acids. Seed fatty acid profile of conifers had been used in the past as a taxonomic marker, and in the present study to identify the botanical origin of pine nut in nine commercial products. Fast gas-liquid chromatography (GLC) was used to resolve the complete fatty acid profile of Pinus spp. samples in less than 5 min. A diagnostic index based on the relative levels of the main fatty acids including distinctive Delta5-olefinic acids was used to identify botanical origins. Results revealed the occurrence of the following Pinus spp. in commercial products: P. pinea, P. koraiensis, P. gerardiana, P. armandii and P. massoniana. The later two species, known as Chinese white pine and Chinese red pine, are only cultivated in China and are not listed as common source of edible pine nuts by the Food and Agriculture Organization (FAO). The present study shows that the botanical origin of pine nuts can be identified in products based on the fatty acid profile.

  10. The Effect of Pine Pollen on Male Aging Rats Gonad Axis Secretory Function%松花粉对雄性衰老大鼠性腺轴分泌功能的影响

    Institute of Scientific and Technical Information of China (English)

    牛嗣云; 韩广明; 刘红艳; 温力; 张艳青; 张晓华; 高晓兰

    2011-01-01

    目的:探讨松花粉预防用药对雄性衰老大鼠性腺轴分泌功能的影响.方法:选用8周龄雄性SD大鼠60只,体重180~220g,随机分为正常对照组、模型组、松花粉预防中(Pz)、低(Pd)剂量组,每组15只.除正常组外其余各组大鼠均采用D-半乳糖连续腹腔注射建立亚急性衰老大鼠模型,预防组在腹腔注射D-半乳糖的同时灌胃松花粉,用药50 d.检测各组血清胰岛素样生长因子-1(IGF-1)、黄体生成素(LH)、促卵泡激素(FSH)、睾酮(T)及下丘脑促性腺激素释放激素(GnRH)的含量.结果:模型组大鼠血清中LH、FSH及下丘脑中GnRH含量明显升高,IGF-1、睾酮含量明显下降,与正常组比较差异有显著性(P<0.05);松花粉中、低剂量组均能不同程度降低大鼠血清LH、FSH及下丘脑中GnRH含量,提高IGF-1、睾酮浓度,与模型组比较,差异显著(P<0.05).结论:松花粉可以预防雄性衰老大鼠性腺轴分泌功能紊乱,对雄性衰老大鼠性腺轴有较为明显的保护作用.%Objective: To approach the effect of pine pollen preventive medication on the secretion function of gonad axis in male aging rats. Method: Sixty rats of 8 weeks old male SD rats (weight: 180-220g)were randomly divided into 4 groups, 15 rats in each: the normal control group , the aging model group,the pine pollen middle dosage preventive group, the pine pollen low dosage preventive group. Except the normal control group, the rats of rest groups were all made by injecting D-gal into abdominal cavity continually. At the same time, the preventive group was made by intragastric administration pine pollen for 60 days. To detect the contents of IGF-1 ,LH,FSH,T in the blood and GnRH in the hypothalamus. Result: The contents of LH,FSH and GnRH in model group were obviously increased, and the content of IGF-1 and T in the model group were obviously decreased, compared with the normal group there was significant deviation(P<0.05);the pine pollen middle

  11. Some Current Themes in Functional Analysis Research.

    Science.gov (United States)

    Vollmer, Timothy R.; Smith, Richard G.

    1996-01-01

    This article discusses clinical application of functional analysis in developmental disabilities, reviewing issues related to treatment logic and development. The article then approaches functional analysis as a research method, reviewing three areas of research: analysis of diverse response topographies, analysis of basic behavioral processes,…

  12. Climatic Triggers of Extremes in Daily Beech, Oak and Pine Stem Diameter Growth and Shrinkage in Northeastern Germany: An Event Coincidence Analysis

    Science.gov (United States)

    Siegmund, Jonatan; Sanders, Tanja; Heinrich, Ingo; Helle, Gerd; Donner, Reik

    2016-04-01

    Observed recent and expected future increases in frequency and intensity of climatic extremes in central Europe may pose critical challenges for domestic tree species. Continuous dendrometer recordings provide a valuable source of information on tree stem diameter growth and shrinkage, offering the possibility to study a tree's response to environmental influences at a high temporal resolution. In this study, we analyze stem diameter variations of three domestic tree species (beech, oak and pine) from 2012-2014. We use the novel statistical approach of event coincidence analysis (ECA) to investigate the simultaneous occurrence of extreme daily weather conditions and extreme daily stem variations, using a 60-days sliding window analysis covering the full growth period of each year. Besides defining extreme events based on individual meteorological variables, we test 105 different combinations of variables regarding their impact on tree growth and shrinkage, postulating conditional event coincidence analysis as a new extension of the original methodology. Our results reveal a strong susceptibility of all three species to extremes in several meteorological variables. Yet, the intra-species differences are comparatively low. The obtained results provide a thorough extension of previous correlation-based studies by emphasizing on the timings of climatic extremes only.We suggest that the employed methodological approach should be further promoted in forest research regarding the investigation of tree responses to changing environmental conditions.

  13. Identification and quantitative analysis of stage-specific carbohydrates in loblolly pine (Pinus taeda) zygotic embryo and female gametophyte tissues.

    Science.gov (United States)

    Pullman, Gerald S; Buchanan, Mike

    2008-07-01

    Stage-specific analyses of starch and 18 sugars, including pentoses, hexoses, disaccharides, trisaccharides, oligosaccharides and sugar alcohols, were made throughout seed development for zygotic embryo and female gametophyte (FG) tissues of loblolly pine (Pinus taeda L.). Tissue was most often analyzed in triplicate from two open-pollinated families grown in different locations and sampled in different years. Carbohydrates were analyzed by enzymatic assay, high performance liquid chromatography or gas chromatography/mass spectrometry. For all carbohydrates quantified, peak concentrations were higher in embryo tissue than in FG tissue. Significant changes in starch and sugar concentrations occurred over time, with both seed collections showing similar trends in temporal changes. Although concentrations were not always similar, embryo and FG tissues generally showed similar patterns of change in starch and sugar concentrations over time. Total starch concentration was highest during early seed development and decreased as development progressed. The major sugars contributing to osmotic potential during early seed development were D-pinitol, sucrose, fructose and glucose. During mid-seed development, D-pinitol, sucrose, fructose, glucose, melibiose and raffinose provided major contributions to the osmotic environment. During late seed development, sucrose, raffinose, melibiose, stachyose and fructose were the major contributors to osmotic potential. These data suggest stage-specific media composition for each step in the somatic embryogenesis protocol.

  14. A New Flavonoid in Pine Needles of Cedrus deodara

    Institute of Scientific and Technical Information of China (English)

    LIU Dong-yan; SHI Xiao-feng; WANG Dong-dong; MA Qu-huan; ZHANG Jun-min; LI Chong

    2011-01-01

    Objective To study the chemical constituents of flavonoids in pine needles of Cedrus deodara.Methods Flavonoids were isolated and purified from ethyl acetate extract of pine needles by chromatography on silica gel and Sephadex LH-20.Their structures were identified on the basis of spectroscopic analysis and chemical evidence.Results Five flavonoids were isolated and purified.Their structures were identified as cedrusone A(1),myricetin(2),2R,3R-dihydromyricetin(3),quercctin(4),and 2R,3R-dihydroquercetin(5).Conclusion Compound 1 is a new compound.Compounds 2-5 are isolated from pine needles of this genus for the first time.

  15. Repeated Raking of Pine Plantations Alters Soil Arthropod Communities

    Directory of Open Access Journals (Sweden)

    Holly K. Ober

    2014-04-01

    Full Text Available Terrestrial arthropods in forests are engaged in vital ecosystem functions that ultimately help maintain soil productivity. Repeated disturbance can cause abrupt and irreversible changes in arthropod community composition and thereby alter trophic interactions among soil fauna. An increasingly popular means of generating income from pine plantations in the Southeastern U.S. is annual raking to collect pine litter. We raked litter once per year for three consecutive years in the pine plantations of three different species (loblolly, Pinus taeda; longleaf, P. palustris; and slash, P. elliottii. We sampled arthropods quarterly for three years in raked and un-raked pine stands to assess temporal shifts in abundance among dominant orders of arthropods. Effects varied greatly among orders of arthropods, among timber types, and among years. Distinct trends over time were apparent among orders that occupied both high trophic positions (predators and low trophic positions (fungivores, detritivores. Multivariate analyses demonstrated that raking caused stronger shifts in arthropod community composition in longleaf and loblolly than slash pine stands. Results highlight the role of pine litter in shaping terrestrial arthropod communities, and imply that repeated removal of pine straw during consecutive years is likely to have unintended consequences on arthropod communities that exacerbate over time.

  16. Analysis of polycyclic aromatic hydrocarbons in tree-rings of Masson pine (Pinus massoniana L.) from two industrial sites in the Pearl River Delta, south China.

    Science.gov (United States)

    Kuang, Yuan-wen; Zhou, Guo-yi; Wen, Da-zhi; Li, Jiong; Sun, Fang-fang

    2011-09-01

    Concentrations of polycyclic aromatic hydrocarbons (PAHs) were examined and potential sources of PAHs were identified from the dated tree-rings of Masson pine (Pinus massoniana L.) near two industrial sites (Danshuikeng, DSK and Xiqiaoshan, XQS) in the Pearl River Delta of south China. Total concentrations of PAHs (∑PAHs) were revealed with similar patterns of temporal trends in the tree-rings at both sites, suggesting tree-rings recorded the historical variation in atmospheric PAHs. The differences of individual PAHs and of ∑PAHs detected in the tree-rings between the two sites reflected the historical differences of airborne PAHs. Regional changes in industrial activities might contribute to the site-specific and period-specific patterns of the tree-ring PAHs. The diagnostic PAH ratios of Ant/(Ant + PA), FL/(FL + Pyr), and BaA/(BaA + Chr)) revealed that PAHs in the tree-rings at both sites mainly stemmed from the combustion process (pyrogenic sources). Principal component analysis further confirmed that wood burning, coal combustion, diesel, and gasoline-powered vehicular emissions were the dominant contributors of PAHs sources at DSK, while diesel combustion, gasoline and natural gas combustion, and incomplete coal combustion were responsible for the main origins of PAHs at XQS. Tree-ring analysis of PAHs was indicative of PAHs from a mixture of sources of combustion, thus minimizing the bias of short-term active air sampling.

  17. Study on Functions of Indigenous Walnut and Pine Seed Oils in Jilin Area%吉林地产核桃油、松子油营养功能的研究

    Institute of Scientific and Technical Information of China (English)

    林平; 赖亚辉

    2012-01-01

    目的观察吉林地产核桃油、松子油对小鼠体内抗氧化酶活性及脂质过氧化产物丙二醛的影响,以了解其营养功能.方法以不同剂量的核桃油、松子油连续给小鼠(6月龄)灌胃,并设立对照组.6周后检测小鼠肝组织中谷胱甘肽过氧化物酶(GSH—Px)、超氧化物歧化酶(SOD)的活性和丙二醛(MDA)的含量.结果与对照组相比,P〈0.05,不同剂量的核桃油、松子油对小鼠体内的谷胱甘肽过氧化物酶、超氧化物歧化酶的活力具有统计学意义,对丙二醛的含量也有统计学意义.结论在本次实验剂量范围内,不同剂量的核桃油、松子油可以提高小鼠体内抗氧化酶的活性,降低丙二醛的含量,具有抗氧化作用,且具有明显的剂量-效应关系.%Objective To observe effects of the indigenous walnut oil and pine seed oil in Jilin area on the activity of antioxidant enzyme and the content of malondialdehyde (MDA) in mice and their functions. Methods The activities of GSH-Px, SOD and the content of MDA in liver of mice were determined after six-week successive intragastric supplementation of walnut oil, pine oil with different doses. Results Contrasting the control group, there were significant differences in the activities of GSH-Px, SOD and the content of MDA in liver of mice among the different doses of walnut oil and pine oil ( P 〈 0. 05 ). Conclusion In the range of the dosage in this experiment, walnut oil and pine oil could improve the activities of GSH-Px, SOD and decrease the content of MDA in liver of mice, and produce an antioxidant effect. The effect could show a significant dose- response relationship.

  18. Soil Fungi Respond More Strongly Than Fine Roots to Elevated CO2 in a Model Regenerating Longleaf Pine-Wiregrass Ecosystem

    Science.gov (United States)

    Increasing atmospheric CO2 will have significant effects on belowground processes which will affect forest structure and function. A model regenerating longleaf pine-wiregrass community [consisting of longleaf pine (Pinus palustris), wiregrass (Aristida stricta), sand post oak (Quescus margaretta),...

  19. Modeling Forest Structural Parameters in the Mediterranean Pines of Central Spain using QuickBird-2 Imagery and Classification and Regression Tree Analysis (CART

    Directory of Open Access Journals (Sweden)

    José A. Delgado

    2012-01-01

    Full Text Available Forest structural parameters such as quadratic mean diameter, basal area, and number of trees per unit area are important for the assessment of wood volume and biomass and represent key forest inventory attributes. Forest inventory information is required to support sustainable management, carbon accounting, and policy development activities. Digital image processing of remotely sensed imagery is increasingly utilized to assist traditional, more manual, methods in the estimation of forest structural attributes over extensive areas, also enabling evaluation of change over time. Empirical attribute estimation with remotely sensed data is frequently employed, yet with known limitations, especially over complex environments such as Mediterranean forests. In this study, the capacity of high spatial resolution (HSR imagery and related techniques to model structural parameters at the stand level (n = 490 in Mediterranean pines in Central Spain is tested using data from the commercial satellite QuickBird-2. Spectral and spatial information derived from multispectral and panchromatic imagery (2.4 m and 0.68 m sided pixels, respectively served to model structural parameters. Classification and Regression Tree Analysis (CART was selected for the modeling of attributes. Accurate models were produced of quadratic mean diameter (QMD (R2 = 0.8; RMSE = 0.13 m with an average error of 17% while basal area (BA models produced an average error of 22% (RMSE = 5.79 m2/ha. When the measured number of trees per unit area (N was categorized, as per frequent forest management practices, CART models correctly classified 70% of the stands, with all other stands classified in an adjacent class. The accuracy of the attributes estimated here is expected to be better when canopy cover is more open and attribute values are at the lower end of the range present, as related in the pattern of the residuals found in this study. Our findings indicate that attributes derived from

  20. A stochastic model of tree architecture and biomass partitioning: application to Mongolian Scots pines.

    Science.gov (United States)

    Wang, Feng; Kang, Mengzhen; Lu, Qi; Letort, Véronique; Han, Hui; Guo, Yan; de Reffye, Philippe; Li, Baoguo

    2011-04-01

    Mongolian Scots pine (Pinus sylvestris var. mongolica) is one of the principal species used for windbreak and sand stabilization in arid and semi-arid areas in northern China. A model-assisted analysis of its canopy architectural development and functions is valuable for better understanding its behaviour and roles in fragile ecosystems. However, due to the intrinsic complexity and variability of trees, the parametric identification of such models is currently a major obstacle to their evaluation and their validation with respect to real data. The aim of this paper was to present the mathematical framework of a stochastic functional-structural model (GL2) and its parameterization for Mongolian Scots pines, taking into account inter-plant variability in terms of topological development and biomass partitioning. In GL2, plant organogenesis is determined by the realization of random variables representing the behaviour of axillary or apical buds. The associated probabilities are calibrated for Mongolian Scots pines using experimental data including means and variances of the numbers of organs per plant in each order-based class. The functional part of the model relies on the principles of source-sink regulation and is parameterized by direct observations of living trees and the inversion method using measured data for organ mass and dimensions. The final calibration accuracy satisfies both organogenetic and morphogenetic processes. Our hypothesis for the number of organs following a binomial distribution is found to be consistent with the real data. Based on the calibrated parameters, stochastic simulations of the growth of Mongolian Scots pines in plantations are generated by the Monte Carlo method, allowing analysis of the inter-individual variability of the number of organs and biomass partitioning. Three-dimensional (3D) architectures of young Mongolian Scots pines were simulated for 4-, 6- and 8-year-old trees. This work provides a new method for characterizing

  1. Analysis of 2-alkylcyclobutanones in cashew nut, nutmeg, apricot kernel, and pine nut samples: re-evaluating the uniqueness of 2-alkylcyclobutanones for irradiated food identification.

    Science.gov (United States)

    Leung, Elvis M K; Tang, Phyllis N Y; Ye, Yuran; Chan, Wan

    2013-10-16

    2-Alkylcyclobutanones (2-ACBs) have long been considered as unique radiolytic products that can be used as indicators for irradiated food identification. A recent report on the natural existence of 2-ACB in non-irradiated nutmeg and cashew nut samples aroused worldwide concern because it contradicts the general belief that 2-ACBs are specific to irradiated food. The goal of this study is to test the natural existence of 2-ACBs in nut samples using our newly developed liquid chromatography-tandem mass spectrometry (LC-MS/MS) method with enhanced analytical sensitivity and selectivity ( Ye , Y. ; Liu , H. ; Horvatovich , P. ; Chan , W. Liquid chromatography-electrospray ionization tandem mass spectrometric analysis of 2-alkylcyclobutanones in irradiated chicken by precolumn derivatization with hydroxylamine . J. Agric. Food Chem. 2013 , 61 , 5758 - 5763 ). The validated method was applied to identify 2-dodecylcyclobutanone (2-DCB) and 2-tetradecylcyclobutanone (2-TCB) in nutmeg, cashew nut, pine nut, and apricot kernel samples (n = 22) of different origins. Our study reveals that 2-DCB and 2-TCB either do not exist naturally or exist at concentrations below the detection limit of the existing method. Thus, 2-DCB and 2-TCB are still valid to be used as biomarkers for identifying irradiated food.

  2. Economics, Environmental Impacts, and Supply Chain Analysis of Cellulosic Biomass for Biofuels in the Southern US: Pine, Eucalyptus, Unmanaged Hardwoods, Forest Residues, Switchgrass, and Sweet Sorghum

    Directory of Open Access Journals (Sweden)

    Jesse Daystar

    2013-11-01

    Full Text Available The production of six regionally important cellulosic biomass feedstocks, including pine, eucalyptus, unmanaged hardwoods, forest residues, switchgrass, and sweet sorghum, was analyzed using consistent life cycle methodologies and system boundaries to identify feedstocks with the lowest cost and environmental impacts. Supply chain analysis was performed for each feedstock, calculating costs and supply requirements for the production of 453,592 dry tonnes of biomass per year. Cradle-to-gate environmental impacts from these modeled supply systems were quantified for nine mid-point indicators using SimaPro 7.2 LCA software. Conversion of grassland to managed forest for bioenergy resulted in large reductions in GHG emissions due to carbon uptake associated with direct land use change. By contrast, converting forests to cropland resulted in large increases in GHG emissions. Production of forest-based feedstocks for biofuels resulted in lower delivered cost, lower greenhouse gas (GHG emissions, and lower overall environmental impacts than the agricultural feedstocks studied. Forest residues had the lowest environmental impact and delivered cost per dry tonne. Using forest-based biomass feedstocks instead of agricultural feedstocks would result in lower cradle-to-gate environmental impacts and delivered biomass costs for biofuel production in the southern U.S.

  3. Meteorological Drivers of Extremes in Daily Stem Radius Variations of Beech, Oak and Pine in Northeastern Germany: An Event Coincidence Analysis

    Directory of Open Access Journals (Sweden)

    Jonatan Frederik Siegmund

    2016-06-01

    Full Text Available Observed recent and expected future increases in frequency and intensity of climatic extremes in central Europe may pose critical challenges for domestic tree species. Continuous dendrometer recordings provide a valuable source of information on tree stem diameter or radius variations, offering the possibility to study a tree's response to environmental influences at a high temporal resolution. In this study, we analyze stem radius variations (SRV of three domestic tree species (beech, oak and pine from 2012 to 2014. We use the novel statistical approach of event coincidence analysis (ECA to investigate the simultaneous occurrence of extreme daily weather conditions and extreme SRVs, where extremes are defined with respect to the common values at a given phase of the annual growth period. Besides defining extreme events based on individual meteorological variables, we additionally introduce conditional and joint ECA as new multivariate extensions of the original methodology and apply them for testing 105 different combinations of variables regarding their impact on SRV extremes. Our results reveal a strong susceptibility of all three species to the extremes of several meteorological variables. Yet, the inter-species differences regarding their response to the meteorological extremes are comparatively low. The obtained results provide a thorough extension of previous correlation-based studies by emphasizing on the timings of climatic extremes only. We suggest that the employed methodological approach should be further promoted in forest research regarding the investigation of tree responses to changing environmental conditions.

  4. Basic methods of linear functional analysis

    CERN Document Server

    Pryce, John D

    2011-01-01

    Introduction to the themes of mathematical analysis, geared toward advanced undergraduate and graduate students. Topics include operators, function spaces, Hilbert spaces, and elementary Fourier analysis. Numerous exercises and worked examples.1973 edition.

  5. Isolation and characterization of Korean pine (Pinus koraiensis) convicilin.

    Science.gov (United States)

    Jin, Tengchuan; Wang, Yang; Chen, Yu-Wei; Albillos, Silvia M; Kothary, Mahendra H; Fu, Tong-Jen; Tankersley, Boyce; McHugh, Tara H; Zhang, Yu-Zhu

    2014-07-01

    A vicilin-like globulin seed storage protein, termed convicilin, was isolated for the first time from Korean pine (Pinus koraiensis). SDS-PAGE analysis revealed that Korean pine convicilin was post-translationally processed. The N-terminal peptide sequences of its components were determined. These peptides could be mapped to a protein translated from an embryo abundant transcript isolated in this study. Similar to vicilin, native convicilin appeared to be homotrimeric. Differential scanning calorimetry (DSC) analyses revealed that this protein is less resistant to thermal treatment than Korean pine vicilin. Its transition temperature was 75.57 °C compared with 84.13 °C for vicilin. The urea induced folding-unfolding equilibrium of pine convicilin monitored by intrinsic fluorescence could be interpreted in terms of a two-state model, with a Cm of 4.41 ± 0.15 M.

  6. Pineal function: impact of microarray analysis

    DEFF Research Database (Denmark)

    Klein, David C; Bailey, Michael J; Carter, David A

    2009-01-01

    Microarray analysis has provided a new understanding of pineal function by identifying genes that are highly expressed in this tissue relative to other tissues and also by identifying over 600 genes that are expressed on a 24-h schedule. This effort has highlighted surprising similarity...... foundation that microarray analysis has provided will broadly support future research on pineal function....

  7. Basic Functional Analysis Puzzles of Spectral Flow

    DEFF Research Database (Denmark)

    Booss-Bavnbek, Bernhelm

    2011-01-01

    We explain an array of basic functional analysis puzzles on the way to general spectral flow formulae and indicate a direction of future topological research for dealing with these puzzles.......We explain an array of basic functional analysis puzzles on the way to general spectral flow formulae and indicate a direction of future topological research for dealing with these puzzles....

  8. Differential analysis of matrix convex functions II

    DEFF Research Database (Denmark)

    Hansen, Frank; Tomiyama, Jun

    2009-01-01

    We continue the analysis in [F. Hansen, and J. Tomiyama, Differential analysis of matrix convex functions. Linear Algebra Appl., 420:102--116, 2007] of matrix convex functions of a fixed order defined in a real interval by differential methods as opposed to the characterization in terms of divide...

  9. Functional analysis in MR urography - made simple

    Energy Technology Data Exchange (ETDEWEB)

    Khrichenko, Dmitry; Darge, Kassa [Children' s Hospital of Philadelphia, Department of Radiology, Philadelphia, PA (United States)

    2010-02-15

    MR urography (MRU) has proved to be a most advantageous imaging modality of the urinary tract in children, providing one-stop comprehensive morphological and functional information, without the utilization of ionizing radiation. The functional analysis of the MRU scan still requires external post-processing using relatively complex software. This has proved to be a limiting factor in widespread routine implementation of MRU functional analysis and use of MRU functional parameters similar to nuclear medicine. We present software, developed in a pediatric radiology department, that not only enables comprehensive automated functional analysis, but is also very user-friendly, fast, easily operated by the average radiologist or MR technician and freely downloadable Virtual Machine is required for the installation, which is obtained at no charge. The analysis software, known as ''CHOP-fMRU,'' has the potential to help overcome the obstacles to widespread use of functional MRU in children. (orig.)

  10. Linear functional analysis for scientists and engineers

    CERN Document Server

    Limaye, Balmohan V

    2016-01-01

    This book provides a concise and meticulous introduction to functional analysis. Since the topic draws heavily on the interplay between the algebraic structure of a linear space and the distance structure of a metric space, functional analysis is increasingly gaining the attention of not only mathematicians but also scientists and engineers. The purpose of the text is to present the basic aspects of functional analysis to this varied audience, keeping in mind the considerations of applicability. A novelty of this book is the inclusion of a result by Zabreiko, which states that every countably subadditive seminorm on a Banach space is continuous. Several major theorems in functional analysis are easy consequences of this result. The entire book can be used as a textbook for an introductory course in functional analysis without having to make any specific selection from the topics presented here. Basic notions in the setting of a metric space are defined in terms of sequences. These include total boundedness, c...

  11. Functional linear regression via canonical analysis

    CERN Document Server

    He, Guozhong; Wang, Jane-Ling; Yang, Wenjing; 10.3150/09-BEJ228

    2011-01-01

    We study regression models for the situation where both dependent and independent variables are square-integrable stochastic processes. Questions concerning the definition and existence of the corresponding functional linear regression models and some basic properties are explored for this situation. We derive a representation of the regression parameter function in terms of the canonical components of the processes involved. This representation establishes a connection between functional regression and functional canonical analysis and suggests alternative approaches for the implementation of functional linear regression analysis. A specific procedure for the estimation of the regression parameter function using canonical expansions is proposed and compared with an established functional principal component regression approach. As an example of an application, we present an analysis of mortality data for cohorts of medflies, obtained in experimental studies of aging and longevity.

  12. Intra- and interspecific interactions of Scots pine and European beech in mixed secondary forests

    Science.gov (United States)

    Erfanifard, Yousef; Stereńczak, Krzysztof

    2017-01-01

    By the mid successional stages, secondary forests of Scots pine in Europe are dominated by mixed stands of pioneer Scots pine and late-successional European beech. The objective of this study was to explore the interactions of pine and beech with their conspecific and heterospecific neighbours in these forests. To accomplish the objective, pine and beech trees were stem-mapped in forty 500 m2 plots randomly located within 18 mixed stands in Milomlyn Forest District, northern Poland. The interactions within and between the species were analysed through two structurally different univariate and bivariate second-order summary statistics, i.e. pair correlation function g(r) and mark correlation function kmm(r). Field measurements showed that the overstorey was dominated by even-aged pine, whereas uneven-aged beech was the only species in the understorey. Pine trees presented an aggregation, while beech trees exhibited a dispersed structure in all stands. In addition, pine trees showed strong attraction to beech trees at small spatial scales (0-2 m). Negative correlation was found between tree height and diameter at breast height of beech, while there was no correlation between height and diameter of pine trees. We conclude that pine trees exhibit negative intraspecific interactions at small spatial scales that are mostly driven by their competitive interactions. Beech trees show strong positive intraspecific interactions and form clumps within pine canopy cover. The strong positive interspecific interactions of pine and beech are the outcome of their different shade tolerance. Our results help to explain successful coexistence of pine and beech in the study site and highlight detailed tree-tree interactions of the species in mixed stands.

  13. Construction and analysis of cryptographic functions

    CERN Document Server

    Budaghyan, Lilya

    2015-01-01

    This book covers novel research on construction and analysis of optimal cryptographic functions such as almost perfect nonlinear (APN), almost bent (AB), planar and bent functions. These functions have optimal resistance to linear and/or differential attacks, which are the two most powerful attacks on symmetric cryptosystems. Besides cryptographic applications, these functions are significant in many branches of mathematics and information theory including coding theory, combinatorics, commutative algebra, finite geometry, sequence design and quantum information theory. The author analyzes equ

  14. Mountain pine beetles use volatile cues to locate host limber pine and avoid non-host Great Basin bristlecone pine

    Science.gov (United States)

    Curtis A. Gray; Justin B. Runyon; Michael J. Jenkins; Andrew D. Giunta

    2015-01-01

    The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins) is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp.) are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not...

  15. Multivariate analysis of functional metagenomes

    Directory of Open Access Journals (Sweden)

    Elizabeth A. Dinsdale

    2013-04-01

    Full Text Available Metagenomics is a primary tool for the description of microbial and viral communities. The sheer magnitude of the data generated in each metagenome makes identifying key differences in the function and taxonomy between communities difficult to elucidate. Here we discuss the application of seven different data mining and statistical analyses by comparing and contrasting the metabolic functions of 212 microbial metagenomes within and between 10 environments. Not all approaches are appropriate for all questions, and researchers should decide which approach addresses their questions. This work demonstrated the use of each approach: for example, random forests provided a robust and enlightening description of both the clustering of metagenomes and the metabolic processes that were important in separating microbial communities from different environments. All analyses identified that the presence of phage genes within the microbial community was a predictor of whether the microbial community was host associated or free living. Several analyses identified the subtle differences that occur with environments, such as those seen in different regions of the marine environment.

  16. [Testate amoebas of pine forests in Mexico].

    Science.gov (United States)

    Bobrov, A A; Krasil'nikov, P A

    2011-01-01

    The population of testate amoebas in the soils of pine forests in Mexico has been studied. In total, 68 species, varieties, and types of testate amoebas with cosmopolite distribution were found. The species diversity of the testate population includes hygrophilous species that differ from hygrophilous species with luvisols in higher andosols. Comparative analysis using the results of one available study of soil testate amoebas from Mexico has been carried out [Bonnet, 1977].

  17. Chloroplast DNA transgresses species boundaries and evolves at variable rates in the California closed-cone pines (Pinus radiata, P. muricata, and P. attenuata).

    Science.gov (United States)

    Hong, Y P; Krupkin, A B; Strauss, S H

    1993-12-01

    We studied phylogenetic relationships among populations and species in the California closed-cone pines (Pinus radiata D. Don, P. attenuata Lemm., and P. muricata D. Don) via chloroplast DNA restriction site analysis. Data on genetic polymorphism within and among 19 populations in the three species were collected using 9 to 20 restriction enzymes and 38 to 384 trees. Because only five clades and extremely low intraclade diversity were found, additional phylogenetic data were collected using a single representative per clade and two outgroup species, P. oocarpa Schiede and P. jeffreyi Loud. In total, 25 restriction enzymes were employed and approximately 2.7 kb surveyed (2.3% of genome). The five clades recognized were Monterey pine, knobcone pine, and the southern, intermediate, and northern races of bishop pine. On the basis of bootstrapping, both Wagner and Dollo parsimony analyses strongly separated the northern and intermediate races of bishop pine from the southern race; knobcone pine from Monterey and bishop pines; and the closed-cone pines from the two outgroups. Approximate divergence times were estimated for the lineages leading to knobcone pine and to the intermediate and northern populations of bishop pine. The position of Monterey pine relative to bishop pine within their monophyletic clade was unresolved. Surprisingly, Montery pine and the southern race of bishop pine were much more similar to one another than was the southern race of bishop pine to its conspecific intermediate and northern races. Both the Monterey and southern bishop pine lineages also evolved severalfold more slowly than did the knobcone pine and intermediate-northern bishop pine lineages.(ABSTRACT TRUNCATED AT 250 WORDS)

  18. Perry Pinyon Pines Protection Project

    Science.gov (United States)

    Daniel McCarthy

    2012-01-01

    Fuel reduction treatments around pinyon pine trees began as a simple project but ended in something more complex, enjoyable, and rewarding. The project eventually led to pinyon species (Pinus monophylla and P. quadrifolia) reforestation efforts, something that has been tried in the past with disappointing results. The Perry Pinyon Pines Protection Project and current...

  19. Use hyperspectral remote sensing technique to monitoring pine wood nomatode disease preliminary

    Science.gov (United States)

    Qin, Lin; Wang, Xianghong; Jiang, Jing; Yang, Xianchang; Ke, Daiyan; Li, Hongqun; Wang, Dingyi

    2016-10-01

    The pine wilt disease is a devastating disease of pine trees. In China, the first discoveries of the pine wilt disease on 1982 at Dr. Sun Yat-sen's Mausoleum in Nanjing. It occurred an area of 77000 hm2 in 2005, More than 1540000 pine trees deaths in the year. Many districts of Chongqing in Three Gorges Reservoir have different degrees of pine wilt disease occurrence. It is a serious threat to the ecological environment of the reservoir area. Use unmanned airship to carry high spectrum remote sensing monitoring technology to develop the study on pine wood nematode disease early diagnosis and early warning and forecasting in this study. The hyper spectral data and the digital orthophoto map data of Fuling District Yongsheng Forestry had been achieved In September 2015. Using digital image processing technology to deal with the digital orthophoto map, the number of disease tree and its distribution is automatic identified. Hyper spectral remote sensing data is processed by the spectrum comparison algorithm, and the number and distribution of disease pine trees are also obtained. Two results are compared, the distribution area of disease pine trees are basically the same, indicating that using low air remote sensing technology to monitor the pine wood nematode distribution is successful. From the results we can see that the hyper spectral data analysis results more accurate and less affected by environmental factors than digital orthophoto map analysis results, and more environment variable can be extracted, so the hyper spectral data study is future development direction.

  20. Function analysis of unknown genes

    DEFF Research Database (Denmark)

    Rogowska-Wrzesinska, A.

    2002-01-01

    leading to decreased growth rate, decreased glucose metabolism, decreased amino acid and protein synthesis and increased protein degradation. Some of these responses define a new type of stress that results from changes in the internal cell environment by overexpression of a membrane protein. Chapter 5...... that have been post-translationally modified by N- or C-terminal truncation and we show that this protein processing is not random and shows a specific pattern for a given yeast strain. Chapter 7 illustrates the construction of yeast proteome database and its potential application in characterising yeast...... analysis is a powerful tool to study yeast proteome and the complex proteome database gives a broad view on the molecular cell biology of yeast. The global database approach allows combining proteome data from different mutants and experiment conditions (e.g. heat stress, phosphate labelling, N...

  1. The Austrian x red pine hybrid

    Science.gov (United States)

    W. B. Critchfield

    1963-01-01

    The genetic improvement of red pine (Pinus resinosa Ait.) presents tree breeders with one of their most difficult problems. Not only is this valuable species remarkably uniform, but until 1955 it resisted all attempts to cross it with other pines. In that year red pine and Austrian pine (P. nigra var. austriaca [...

  2. Static analysis of function calls in Erlang

    Directory of Open Access Journals (Sweden)

    Dániel Horpácsi

    2013-06-01

    Full Text Available Functions and their relations can affect numerous properties and metrics of a functional program. To identify and represent the functions and their calling connections, software analysers commonly apply semantic function analysis, which derives the static call graph of the program, based on its source code. Function calls however may be dynamic and complex, making it difficult to statically identify the callee. Dynamic calls are determined just at run-time, static analysis therefore cannot be expected to fully identify every call. Nevertheless, by utilising the results of a properly performed data-flow analysis as well as taking ambiguous references into account, numerous dynamic calls are discoverable and representable. We consider cases where the identifiers of the callee are statically determined, but they flow into the call expression from a different program point, and also, we manage to handle function calls whose identifiers are not fully identifiable at compile-time. By utilising the improved reference analysis, we extend the static call graph with various information about dynamic function calls. We investigate such a function call analysis in the programming language Erlang.

  3. A long-term experimental site in temperate oak-pine forest

    OpenAIRE

    Korboulewsky, N.; Balandier, P.; Ballon, P; Boscardin, Y.; Dauffy Richard, E.; Dumas, Y.; Ginisty, C.; Gosselin, M.; Hamard, J.P.; Laurent, L.; Marell, A.; Menuet, C.; Ndiaye, A.; Novara, E.; Pérot, T.

    2015-01-01

    The objective is to study the cross effects of: - stand composition (pure oak, pure pine, mixed pine-oak) and - stand density (number of trees/ha) combined with - presence of wild ungulates (roe deer, wild boar, red deer), on the ecosystem functioning such as tree productivity, resource use and allocation (including water and nutrients), biodiversity and understory vegetation dynamics including regeneration.

  4. A Mid-IR Multivariate Analysis Study on the Gross Calorific Value in Longleaf Pine: Impact on Correlations with Lignin and Extractive Contents

    Science.gov (United States)

    Chi-Leung So; Thomas L. Eberhardt

    2013-01-01

    Twenty 70-year-old longleaf pine trees from a spacing, thinning, and pruning study were harvested, from which samples were analyzed for gross calorific value (GCV). A strong correlation was found between GCV and extractive contents for the unextracted wood samples. Although lignin content should impact GCV, no correlation was found between the variation in GCV with...

  5. Hyperspectral image classification using functional data analysis.

    Science.gov (United States)

    Li, Hong; Xiao, Guangrun; Xia, Tian; Tang, Y Y; Li, Luoqing

    2014-09-01

    The large number of spectral bands acquired by hyperspectral imaging sensors allows us to better distinguish many subtle objects and materials. Unlike other classical hyperspectral image classification methods in the multivariate analysis framework, in this paper, a novel method using functional data analysis (FDA) for accurate classification of hyperspectral images has been proposed. The central idea of FDA is to treat multivariate data as continuous functions. From this perspective, the spectral curve of each pixel in the hyperspectral images is naturally viewed as a function. This can be beneficial for making full use of the abundant spectral information. The relevance between adjacent pixel elements in the hyperspectral images can also be utilized reasonably. Functional principal component analysis is applied to solve the classification problem of these functions. Experimental results on three hyperspectral images show that the proposed method can achieve higher classification accuracies in comparison to some state-of-the-art hyperspectral image classification methods.

  6. Changes in Woodland Use from Longleaf Pine to Loblolly Pine

    Directory of Open Access Journals (Sweden)

    John Schelhas

    2010-08-01

    Full Text Available There is growing evidence suggesting that the United States’ roots are not in a state of “pristine” nature but rather in a “human-modified landscape” over which Native people have since long exerted vast control and use. The longleaf pine is a typical woodland use largely shaped by fires, lightning and by Native Americans. The frequent fires, which were used to reduce fuels and protect themselves from wildfires, enhance wildlife habitats and for hunting, protect themselves from predators and enemy tribes, led to the establishment of the fire dependent and fire tolerant longleaf pine across the southern landscape. In the last 3 centuries however, the range of longleaf ecosystem has been gradually replaced first by agriculture and then by loblolly pine farming. The joint effects of agricultural expansion, intense logging of the longleaf in the late 1800s, expanded fire control since the early 20th century, and subsequent bare-root planting beginning in the 1930s, has permitted loblolly pine to become dominantly established in the south. Longleaf and loblolly pines represent two distinct woodland uses and represent separate human values. This study investigated the change from longleaf pine use to loblolly pine farming in Southern US from perspectives of human values of land and natural resources.

  7. The relationship between functional movement analysis and ...

    African Journals Online (AJOL)

    ... functional movement analysis and lowerbody injury rates in adolescent female football players. ... South African Journal of Sports Medicine ... suggestions that it is essential to develop a prevention strategy to measure trauma and recovery.

  8. The Functional Methods of Discourse Analysis

    Institute of Scientific and Technical Information of China (English)

    覃卓敏

    2008-01-01

    From the macroscopic angle of function, methods of discourse analysis are clarified to find out two important methods in pragmatics and through which will better used in the understanding of discourse.

  9. Pathway-Based Functional Analysis of Metagenomes

    Science.gov (United States)

    Bercovici, Sivan; Sharon, Itai; Pinter, Ron Y.; Shlomi, Tomer

    Metagenomic data enables the study of microbes and viruses through their DNA as retrieved directly from the environment in which they live. Functional analysis of metagenomes explores the abundance of gene families, pathways, and systems, rather than their taxonomy. Through such analysis researchers are able to identify those functional capabilities most important to organisms in the examined environment. Recently, a statistical framework for the functional analysis of metagenomes was described that focuses on gene families. Here we describe two pathway level computational models for functional analysis that take into account important, yet unaddressed issues such as pathway size, gene length and overlap in gene content among pathways. We test our models over carefully designed simulated data and propose novel approaches for performance evaluation. Our models significantly improve over current approach with respect to pathway ranking and the computations of relative abundance of pathways in environments.

  10. Functional Data Analysis Applied in Chemometrics

    DEFF Research Database (Denmark)

    Muller, Martha

    In this thesis we explore the use of functional data analysis as a method to analyse chemometric data, more specically spectral data in metabolomics. Functional data analysis is a vibrant eld in statistics. It has been rapidly expanding in both methodology and applications since it was made well...... known by Ramsay & Silverman's monograph in 1997. In functional data analysis, the data are curves instead of data points. Each curve is measured at discrete points along a continuum, for example, time or frequency. It is assumed that the underlying process generating the curves is smooth......, but it is not assumed that the adjacent points measured along the continuum are independent. Standard chemometric methods originate from the eld of multivariate analysis, where variables are often assumed to be independent. Typically these methods do not explore the rich functional nature of spectral data. Metabolomics...

  11. Molecular Characterization and Functional Analysis of Three Pathogenesis-Related Cytochrome P450 Genes from Bursaphelenchus xylophilus (Tylenchida: Aphelenchoidoidea

    Directory of Open Access Journals (Sweden)

    Xiao-Lu Xu

    2015-03-01

    Full Text Available Bursaphelenchus xylophilus, the causal agent of pine wilt disease, causes huge economic losses in pine forests. The high expression of cytochrome P450 genes in B. xylophilus during infection in P. thunbergii indicated that these genes had a certain relationship with the pathogenic process of B. xylophilus. Thus, we attempted to identify the molecular characterization and functions of cytochrome P450 genes in B. xylophilus. In this study, full-length cDNA of three cytochrome P450 genes, BxCYP33C9, BxCYP33C4 and BxCYP33D3 were first cloned from B. xylophilus using 3' and 5' RACE PCR amplification. Sequence analysis showed that all of them contained a highly-conserved cytochrome P450 domain. The characteristics of the three putative proteins were analyzed with bioinformatic methods. RNA interference (RNAi was used to assess the functions of BxCYP33C9, BxCYP33C4 and BxCYP33D3. The results revealed that these cytochrome P450 genes were likely to be associated with the vitality, dispersal ability, reproduction, pathogenicity and pesticide metabolism of B. xylophilus. This discovery confirmed the molecular characterization and functions of three cytochrome P450 genes from B. xylophilus and provided fundamental information in elucidating the molecular interaction mechanism between B. xylophilus and its host plant.

  12. Functional Analysis and Intervention for Breath Holding.

    Science.gov (United States)

    Kern, Lee; And Others

    1995-01-01

    A functional analysis of breath-holding episodes in a 7-year-old girl with severe mental retardation and Cornelia-de-Lange syndrome indicated that breath holding served an operant function, primarily to gain access to attention. Use of extinction, scheduled attention, and a picture card communication system decreased breath holding. (Author/SW)

  13. Functional Analysis and Treatment of Aberrant Behavior.

    Science.gov (United States)

    Mace, F. Charles; And Others

    1991-01-01

    This article reviews general classes of variables which help to maintain aberrant behavior including attention seeking, sensory and perceptual consequences, and access to materials or activities. Suggestions for a methodology providing a comprehensive functional analysis are offered which include descriptive analysis, hypothesis forming,…

  14. Spectral theory and nonlinear functional analysis

    CERN Document Server

    Lopez-Gomez, Julian

    2001-01-01

    This Research Note addresses several pivotal problems in spectral theory and nonlinear functional analysis in connection with the analysis of the structure of the set of zeroes of a general class of nonlinear operators. It features the construction of an optimal algebraic/analytic invariant for calculating the Leray-Schauder degree, new methods for solving nonlinear equations in Banach spaces, and general properties of components of solutions sets presented with minimal use of topological tools. The author also gives several applications of the abstract theory to reaction diffusion equations and systems.The results presented cover a thirty-year period and include recent, unpublished findings of the author and his coworkers. Appealing to a broad audience, Spectral Theory and Nonlinear Functional Analysis contains many important contributions to linear algebra, linear and nonlinear functional analysis, and topology and opens the door for further advances.

  15. Functional Data Analysis Applied in Chemometrics

    DEFF Research Database (Denmark)

    Muller, Martha

    the worlds of statistics and chemometrics. We want to provide a glimpse of the essential and complex data pre-processing that is well known to chemometricians, but is generally unknown to statisticians. Pre-processing can potentially have a strong in uence on the results of consequent data analysis. Our......In this thesis we explore the use of functional data analysis as a method to analyse chemometric data, more specically spectral data in metabolomics. Functional data analysis is a vibrant eld in statistics. It has been rapidly expanding in both methodology and applications since it was made well...... known by Ramsay & Silverman's monograph in 1997. In functional data analysis, the data are curves instead of data points. Each curve is measured at discrete points along a continuum, for example, time or frequency. It is assumed that the underlying process generating the curves is smooth...

  16. Community Structure, Biodiversity, and Ecosystem Services in Treeline Whitebark Pine Communities: Potential Impacts from a Non-Native Pathogen

    Directory of Open Access Journals (Sweden)

    Diana F. Tomback

    2016-01-01

    Full Text Available Whitebark pine (Pinus albicaulis has the largest and most northerly distribution of any white pine (Subgenus Strobus in North America, encompassing 18° latitude and 21° longitude in western mountains. Within this broad range, however, whitebark pine occurs within a narrow elevational zone, including upper subalpine and treeline forests, and functions generally as an important keystone and foundation species. In the Rocky Mountains, whitebark pine facilitates the development of krummholz conifer communities in the alpine-treeline ecotone (ATE, and thus potentially provides capacity for critical ecosystem services such as snow retention and soil stabilization. The invasive, exotic pathogen Cronartium ribicola, which causes white pine blister rust, now occurs nearly rangewide in whitebark pine communities, to their northern limits. Here, we synthesize data from 10 studies to document geographic variation in structure, conifer species, and understory plants in whitebark pine treeline communities, and examine the potential role of these communities in snow retention and regulating downstream flows. Whitebark pine mortality is predicted to alter treeline community composition, structure, and function. Whitebark pine losses in the ATE may also alter response to climate warming. Efforts to restore whitebark pine have thus far been limited to subalpine communities, particularly through planting seedlings with potential blister rust resistance. We discuss whether restoration strategies might be appropriate for treeline communities.

  17. Hibernation Site Philopatry in Northern Pine Snakes (Pituophis melanoleucus) in New Jersey.

    Science.gov (United States)

    Burger, Joanna; Zappalorti, Robert

    2015-06-01

    Northern Pine Snakes (Pituophis melanoleucus) are one of the few snakes that spend the winter in underground hibernacula that they excavate. We report the use of hibernacula by Pine Snakes from 1986 to 2012 in the New Jersey Pine Barrens. We determined whether philopatry to a specific hibernaculum varied as a function of age, sex, and location of the hibernaculum. Three hibernacula were occupied nearly continuously for 27 yr by 1 to 27 snakes each year. With known-age snakes (N = 120), captured mainly as hatchlings and 2-yr-olds, we found that 23% were always philopatric. Philopatry was related to age of last capture, sex, and capture location. Philopatry was higher for 1) females compared with males, 2) snakes at two solitary hibernacula compared with a hibernaculum complex, and 3) snakes 6 yr old or younger, compared with older snakes. Of hatchlings found hibernating, 24% used the same hibernation site the next year, and 38% were located at year 4 or later. The number of snakes that always used the same hibernation site declined with the age of last capture. Snakes that entered hibernacula as hatchlings were found more often than those that entered as 2-yr-olds. For the seven snakes that were 14 yr or older, females were found 64- 86 % of the time, whereas males were found 15 to 50% of the time. Understanding the behavior and habitat requirements of snakes during different seasons is central to life-history analysis and for conserving viable populations.

  18. Hibernation Site Philopatry in Northern Pine Snakes (Pituophis melanoleucus) in New Jersey

    Science.gov (United States)

    Burger, Joanna; Zappalorti, Robert

    2015-01-01

    Northern Pine Snakes (Pituophis melanoleucus) are one of the few snakes that spend the winter in underground hibernacula that they excavate. We report the use of hibernacula by Pine Snakes from 1986 to 2012 in the New Jersey Pine Barrens. We determined whether philopatry to a specific hibernaculum varied as a function of age, sex, and location of the hibernaculum. Three hibernacula were occupied nearly continuously for 27 yr by 1 to 27 snakes each year. With known-age snakes (N = 120), captured mainly as hatchlings and 2-yr-olds, we found that 23% were always philopatric. Philopatry was related to age of last capture, sex, and capture location. Philopatry was higher for 1) females compared with males, 2) snakes at two solitary hibernacula compared with a hibernaculum complex, and 3) snakes 6 yr old or younger, compared with older snakes. Of hatchlings found hibernating, 24% used the same hibernation site the next year, and 38% were located at year 4 or later. The number of snakes that always used the same hibernation site declined with the age of last capture. Snakes that entered hibernacula as hatchlings were found more often than those that entered as 2-yr-olds. For the seven snakes that were 14 yr or older, females were found 64– 86 % of the time, whereas males were found 15 to 50% of the time. Understanding the behavior and habitat requirements of snakes during different seasons is central to life-history analysis and for conserving viable populations. PMID:27011392

  19. Functional analysis in MR urography - made simple.

    Science.gov (United States)

    Khrichenko, Dmitry; Darge, Kassa

    2010-02-01

    MR urography (MRU) has proved to be a most advantageous imaging modality of the urinary tract in children, providing one-stop comprehensive morphological and functional information, without the utilization of ionizing radiation. The functional analysis of the MRU scan still requires external post-processing using relatively complex software. This has proved to be a limiting factor in widespread routine implementation of MRU functional analysis and use of MRU functional parameters similar to nuclear medicine. We present software, developed in a pediatric radiology department, that not only enables comprehensive automated functional analysis, but is also very user-friendly, fast, easily operated by the average radiologist or MR technician and freely downloadable at www.chop-fmru.com . A copy of IDL Virtual Machine is required for the installation, which is obtained at no charge at www.ittvis.com . The analysis software, known as "CHOP-fMRU," has the potential to help overcome the obstacles to widespread use of functional MRU in children.

  20. Multilevel sparse functional principal component analysis.

    Science.gov (United States)

    Di, Chongzhi; Crainiceanu, Ciprian M; Jank, Wolfgang S

    2014-01-29

    We consider analysis of sparsely sampled multilevel functional data, where the basic observational unit is a function and data have a natural hierarchy of basic units. An example is when functions are recorded at multiple visits for each subject. Multilevel functional principal component analysis (MFPCA; Di et al. 2009) was proposed for such data when functions are densely recorded. Here we consider the case when functions are sparsely sampled and may contain only a few observations per function. We exploit the multilevel structure of covariance operators and achieve data reduction by principal component decompositions at both between and within subject levels. We address inherent methodological differences in the sparse sampling context to: 1) estimate the covariance operators; 2) estimate the functional principal component scores; 3) predict the underlying curves. Through simulations the proposed method is able to discover dominating modes of variations and reconstruct underlying curves well even in sparse settings. Our approach is illustrated by two applications, the Sleep Heart Health Study and eBay auctions.

  1. Fine-scale modeling of bristlecone pine treeline position in the Great Basin, USA

    Science.gov (United States)

    Bruening, Jamis M.; Tran, Tyler J.; Bunn, Andrew G.; Weiss, Stuart B.; Salzer, Matthew W.

    2017-01-01

    Great Basin bristlecone pine (Pinus longaeva) and foxtail pine (Pinus balfouriana) are valuable paleoclimate resources due to their longevity and climatic sensitivity of their annually-resolved rings. Treeline research has shown that growing season temperatures limit tree growth at and just below the upper treeline. In the Great Basin, the presence of precisely dated remnant wood above modern treeline shows that the treeline ecotone shifts at centennial timescales tracking long-term changes in climate; in some areas during the Holocene climatic optimum treeline was 100 meters higher than at present. Regional treeline position models built exclusively from climate data may identify characteristics specific to Great Basin treelines and inform future physiological studies, providing a measure of climate sensitivity specific to bristlecone and foxtail pine treelines. This study implements a topoclimatic analysis—using topographic variables to explain patterns in surface temperatures across diverse mountainous terrain—to model the treeline position of three semi-arid bristlecone and/or foxtail pine treelines in the Great Basin as a function of growing season length and mean temperature calculated from in situ measurements. Results indicate: (1) the treeline sites used in this study are similar to other treelines globally, and require a growing season length of between 147-153 days and average temperature ranging from 5.5°C-7.2°C, (2) site-specific treeline position models may be improved through topoclimatic analysis and (3) treeline position in the Great Basin is likely out of equilibrium with the current climate, indicating a possible future upslope shift in treeline position.

  2. SURFACE TEXTURE ANALYSIS FOR FUNCTIONALITY CONTROL

    DEFF Research Database (Denmark)

    De Chiffre, Leonardo; Andreasen, Jan Lasson; Tosello, Guido

    This document is used in connection with three exercises of 3 hours duration as a part of the course VISION ONLINE – One week course on Precision & Nanometrology. The exercises concern surface texture analysis for functionality control, in connection with three different case stories. This docume...... contains a short description of each case story, 3-D roughness parameters analysis and relation with the product’s functionality.......This document is used in connection with three exercises of 3 hours duration as a part of the course VISION ONLINE – One week course on Precision & Nanometrology. The exercises concern surface texture analysis for functionality control, in connection with three different case stories. This document...

  3. Identification of steroleosin in oil bodies of pine megagametophytes.

    Science.gov (United States)

    Pasaribu, Buntora; Chung, Tse-yu; Chen, Chii-Shiarng; Jiang, Pei-Luen; Tzen, Jason T C

    2016-04-01

    Three classes of integral proteins termed oleosin, caleosin and steroleosin have been identified in seed oil bodies of diverse angiosperm species. Recently, two oleosin isoforms and one caleosin were identified in megagametophyte oil bodies of pine (Pinus massoniana), a representative gymnosperm species. In this study, a putative steroleosin of approximately 41 kDa was observed in isolated oil bodies of pine megagametophytes, and its corresponding cDNA fragment was obtained by PCR cloning and further confirmed by mass spectrometric analysis. Phylogenetic tree analysis showed that pine steroleosin was evolutionarily more closely-related to steroleosin-B than steroleosin-A found in angiosperm seed oil bodies. As expected, artificial oil bodies constituted with recombinant steroleosin over-expressed in Escherichia coli were less stable and larger than native pine oil bodies. Filipin staining of artificial oil bodies sheltered by recombinant steroleosin with or without its sterol binding domain showed that the sterol binding domain was responsible for the sterol binding capability of steroleosin. Sterol-coupling dehydrogenase activity was demonstrated in artificial oil bodies constituted with recombinant steroleosin as well as in purified pine oil bodies.

  4. Functional analysis of plastid-encoded genes

    OpenAIRE

    Swiatek, Magdalena

    2002-01-01

    Plastid chromosomes from the variety of plant species contain several conserved open reading frames of unknown function, which most probably represent functional genes. The primary aim of this thesis was the analysis of the role of two such ORFs, designated ycfs or hypothetical chloroplast reading frames, namely ycf9 (ORF62) and ycf10 (ORF229, cemA). Both were analyzed in Nicotiana tabacum (tobacco) via their inactivation using biolistic plastid transformation. A new experiment...

  5. Allergic Reactions to Pine Nut: A Review.

    Science.gov (United States)

    Cabanillas, B; Novak, N

    2015-01-01

    Pine nut is a nutrient-rich food with a beneficial impact on human health. The many bioactive constituents of pine nut interact synergistically to affect human physiology in a favorable way. However, pine nut can trigger dangerous allergic reactions. Severe anaphylactic reactions to pine nut accounted for most of the 45 cases reported in the scientific literature. Pine nut allergy seems to be characterized by low IgE cross-reactivity with other commonly consumed nuts and a high monosensitization rate. The present review provides updated information on allergic reactions to pine nut, molecular characterization of its allergens, and potential homologies with other nut allergens.

  6. Boolean nested canalizing functions: a comprehensive analysis

    CERN Document Server

    Li, Yuan; Murrugarra, David; Aguilar, Boris; Laubenbacher, Reinhard

    2012-01-01

    Boolean network models of molecular regulatory networks have been used successfully in computational systems biology. The Boolean functions that appear in published models tend to have special properties, in particular the property of being nested canalizing, a property inspired by the concept of canalization in evolutionary biology. It has been shown that networks comprised of nested canalizing functions have dynamic properties that make them suitable for modeling molecular regulatory networks, namely a small number of (large) attractors, as well as relatively short limit cycles. This paper contains a detailed analysis of this class of functions, based on a novel normal form as polynomial functions over the Boolean field. The concept of layer is introduced that stratifies variables into different classes depending on their level of dominance. Using this layer concept a closed form formula is derived for the number of nested canalizing functions with a given number of variables. Additional metrics analyzed in...

  7. Three loblolly pine CesA genes expressed in developing xylem are orthologous to secondary cell wall CesA genes of angiosperms.

    Science.gov (United States)

    Nairn, C Joseph; Haselkorn, Tamara

    2005-06-01

    Specific plant cellulose synthases (CesA), encoded by a multigene family, are necessary for secondary wall synthesis in vascular tissues and are critical to wood production. We obtained full-length clones for the three CesAs that are highly expressed in developing xylem and examined their phylogenetic relationships and expression patterns in loblolly pine tissues. Full-length CesA clones were isolated from cDNA of developing loblolly pine (Pinus taeda) xylem and phylogenetic inferences made from plant CesA protein sequences. Expression of the three genes was examined by Northern blot analysis and semiquantitative RT-PCR. Each of three PtCesA genes is orthologous to one of the three angiosperm secondary cell wall CesAs. The PtCesAs are coexpressed in tissues of loblolly pine with tissues undergoing secondary cell wall biosynthesis showing the highest levels of expression. Phylogenetic and expression analyses suggest that functional roles for these loblolly pine CesAs are analogous to those of orthologs in angiosperm taxa. Based upon evidence from this and other studies, we suggest division of seed plant CesA genes into six major paralogous groups, each containing orthologs from various taxa. Available evidence suggests that paralogous CesA genes and their distinct functional roles evolved before the divergence of gymnosperm and angiosperm lineages.

  8. GPU accelerated dynamic functional connectivity analysis for functional MRI data.

    Science.gov (United States)

    Akgün, Devrim; Sakoğlu, Ünal; Esquivel, Johnny; Adinoff, Bryon; Mete, Mutlu

    2015-07-01

    Recent advances in multi-core processors and graphics card based computational technologies have paved the way for an improved and dynamic utilization of parallel computing techniques. Numerous applications have been implemented for the acceleration of computationally-intensive problems in various computational science fields including bioinformatics, in which big data problems are prevalent. In neuroimaging, dynamic functional connectivity (DFC) analysis is a computationally demanding method used to investigate dynamic functional interactions among different brain regions or networks identified with functional magnetic resonance imaging (fMRI) data. In this study, we implemented and analyzed a parallel DFC algorithm based on thread-based and block-based approaches. The thread-based approach was designed to parallelize DFC computations and was implemented in both Open Multi-Processing (OpenMP) and Compute Unified Device Architecture (CUDA) programming platforms. Another approach developed in this study to better utilize CUDA architecture is the block-based approach, where parallelization involves smaller parts of fMRI time-courses obtained by sliding-windows. Experimental results showed that the proposed parallel design solutions enabled by the GPUs significantly reduce the computation time for DFC analysis. Multicore implementation using OpenMP on 8-core processor provides up to 7.7× speed-up. GPU implementation using CUDA yielded substantial accelerations ranging from 18.5× to 157× speed-up once thread-based and block-based approaches were combined in the analysis. Proposed parallel programming solutions showed that multi-core processor and CUDA-supported GPU implementations accelerated the DFC analyses significantly. Developed algorithms make the DFC analyses more practical for multi-subject studies with more dynamic analyses.

  9. A Complexity Analysis of Functional Interpretations

    DEFF Research Database (Denmark)

    Hernest, Mircea-Dan; Kohlenbach, Ulrich

    2003-01-01

    We give a quantitative analysis of G ̈odel’s functional interpretation and its monotone variant. The two have been used for the extraction of programs and numerical bounds as well as for conservation results. They apply both to (semi-)intuitionistic as well as (combined with negative translation)...

  10. A complexity analysis of functional interpretations

    DEFF Research Database (Denmark)

    Hernest, Mircea-Dan; Kohlenbach, Ulrich

    2005-01-01

    Summary: We give a quantitative analysis of Gödel's functional     interpretation and its monotone variant. The two have been used     for the extraction of programs and numerical bounds as well as     for conservation results. They apply both to (semi-)intuitionistic     as well as (combined...

  11. Pineal function : Impact of microarray analysis

    NARCIS (Netherlands)

    Klein, David C.; Bailey, Michael J.; Carter, David A.; Kim, Jong-so; Shi, Qiong; Ho, Anthony K.; Chik, Constance L.; Gaildrat, Pascaline; Morin, Fabrice; Ganguly, Surajit; Rath, Martin F.; Moller, Morten; Sugden, David; Rangel, Zoila G.; Munson, Peter J.; Weller, Joan L.; Coon, Steven L.

    2010-01-01

    Microarray analysis has provided a new understanding of pineal function by identifying genes that are highly expressed in this tissue relative to other tissues and also by identifying over 600 genes that are expressed on a 24-h schedule. This effort has highlighted surprising similarity to the retin

  12. Functional Analysis and Treatment of Severe Pica.

    Science.gov (United States)

    Mace, F. Charles; Knight, David

    1986-01-01

    A two-phase functional analysis of a profoundly retarded 19-year-old male's pica behavior resulted in an effective staff-implemented treatment consisting of limited staff-client interaction and removal of a protective helmet which had previously been prescribed to help control pica. (Author/JW)

  13. Functional data analysis of sleeping energy expenditure

    Science.gov (United States)

    Adequate sleep is crucial during childhood for metabolic health, and physical and cognitive development. Inadequate sleep can disrupt metabolic homeostasis and alter sleeping energy expenditure (SEE). Functional data analysis methods were applied to SEE data to elucidate the population structure of ...

  14. Species determination of pine nuts in commercial samples causing pine nut syndrome

    DEFF Research Database (Denmark)

    Mikkelsen, Aase Æ.; Jessen, Flemming; Ballin, Nicolai Z.

    2014-01-01

    Consumption of pine nuts from the species of Pinus armandii has been reported to cause dysgeusia, commonly known as pine mouth, or pine nut syndrome (PNS). However, the number of reports on pine nut consumptions of the different species and PNS is limited. This leaves open the possibility...

  15. Radiative transfer theory for polarimetric remote sensing of pine forest

    Science.gov (United States)

    Hsu, C. C.; Han, H. C.; Shin, Robert T.; Kong, Jin AU; Beaudoin, A.; Letoan, T.

    1992-01-01

    The radiative transfer theory is applied to interpret polarimetric radar backscatter from pine forest with clustered vegetation structures. To take into account the clustered structures with the radiative transfer theory, the scattering function of each cluster is calculated by incorporating the phase interference of scattered fields from each component. Subsequently, the resulting phase matrix is used in the radiative transfer equations to evaluate the polarimetric backscattering coefficients from random medium layers embedded with vegetation clusters. Upon including the multi-scale structures, namely, trunks, primary and secondary branches, as well as needles, we interpret and simulate the polarimetric radar responses from pine forest for different frequencies and looking angles. The preliminary results are shown to be in good agreement with the measured backscattering coefficients at the Landes maritime pine forest during the MAESTRO-1 experiment.

  16. Improving information retrieval in functional analysis.

    Science.gov (United States)

    Rodriguez, Juan C; González, Germán A; Fresno, Cristóbal; Llera, Andrea S; Fernández, Elmer A

    2016-12-01

    Transcriptome analysis is essential to understand the mechanisms regulating key biological processes and functions. The first step usually consists of identifying candidate genes; to find out which pathways are affected by those genes, however, functional analysis (FA) is mandatory. The most frequently used strategies for this purpose are Gene Set and Singular Enrichment Analysis (GSEA and SEA) over Gene Ontology. Several statistical methods have been developed and compared in terms of computational efficiency and/or statistical appropriateness. However, whether their results are similar or complementary, the sensitivity to parameter settings, or possible bias in the analyzed terms has not been addressed so far. Here, two GSEA and four SEA methods and their parameter combinations were evaluated in six datasets by comparing two breast cancer subtypes with well-known differences in genetic background and patient outcomes. We show that GSEA and SEA lead to different results depending on the chosen statistic, model and/or parameters. Both approaches provide complementary results from a biological perspective. Hence, an Integrative Functional Analysis (IFA) tool is proposed to improve information retrieval in FA. It provides a common gene expression analytic framework that grants a comprehensive and coherent analysis. Only a minimal user parameter setting is required, since the best SEA/GSEA alternatives are integrated. IFA utility was demonstrated by evaluating four prostate cancer and the TCGA breast cancer microarray datasets, which showed its biological generalization capabilities.

  17. Dynamic Blowout Risk Analysis Using Loss Functions.

    Science.gov (United States)

    Abimbola, Majeed; Khan, Faisal

    2017-08-11

    Most risk analysis approaches are static; failing to capture evolving conditions. Blowout, the most feared accident during a drilling operation, is a complex and dynamic event. The traditional risk analysis methods are useful in the early design stage of drilling operation while falling short during evolving operational decision making. A new dynamic risk analysis approach is presented to capture evolving situations through dynamic probability and consequence models. The dynamic consequence models, the focus of this study, are developed in terms of loss functions. These models are subsequently integrated with the probability to estimate operational risk, providing a real-time risk analysis. The real-time evolving situation is considered dependent on the changing bottom-hole pressure as drilling progresses. The application of the methodology and models are demonstrated with a case study of an offshore drilling operation evolving to a blowout. © 2017 Society for Risk Analysis.

  18. Hybrids of sugar pine by embryo culture

    Science.gov (United States)

    E. C. Stone; J. W. Duffield

    1950-01-01

    A modified embryo culture technique was used to facilitate germination of seed obtained after pollinating sugar pine with pollen from blister rust- resistant Armand and Korean pines. Resulting seedlings appear to be hybrids.

  19. Molecular dissection of white pine genetic resistance to Cronartium ribicola

    Science.gov (United States)

    Jun-Jun Liu; Richard Sniezko

    2011-01-01

    Pinus monticola (Dougl. ex D. Don.) maintains a complex defence system that detects white pine blister rust pathogen (Cronartium ribicola J.C.Fisch.) and activates resistance responses. A thorough understanding of how it functions at the molecular level would provide us new strategies for creating forest trees with durable disease resistance. Our research focuses on...

  20. Southern Pine Based on Biorefinery Center

    Energy Technology Data Exchange (ETDEWEB)

    Ragauskas, Arthur J. [Georgia Inst. of Technology, Atlanta, GA (United States); Singh, Preet [Georgia Inst. of Technology, Atlanta, GA (United States)

    2013-12-20

    This program seeks to develop an integrated southern pine wood to biofuels/biomaterials processing facility on the Recipient’s campus, that will test advanced integrated wood processing technologies at the laboratory scale, including: The generation of the bioethanol from pines residues and hemicelluloses extracted from pine woodchips; The conversion of extracted woodchips to linerboard and bleach grade pulps; and the efficient conversion of pine residues, bark and kraft cooking liquor into a useful pyrolysis oil.

  1. Southern Pine Based on Biorefinery Center

    Energy Technology Data Exchange (ETDEWEB)

    Ragauskas, Arthur J; Singh, Preet

    2014-01-10

    This program seeks to develop an integrated southern pine wood to biofuels/biomaterials processing facility on the Recipient’s campus, that will test advanced integrated wood processing technologies at the laboratory scale, including: • The generation of the bioethanol from pines residues and hemicelluloses extracted from pine woodchips; • The conversion of extracted woodchips to linerboard and bleach grade pulps; and • The efficient conversion of pine residues, bark and kraft cooking liquor into a useful pyrolysis oil.

  2. Assessing post-industrial land cover change at the Pine Point Mine, NWT, Canada using multi-temporal Landsat analysis and landscape metrics.

    Science.gov (United States)

    LeClerc, Emma; Wiersma, Yolanda F

    2017-04-01

    This study investigates land cover change near the abandoned Pine Point Mine in Canada's Northwest Territories. Industrial mineral development transforms local environments, and the effects of such disturbances are often long-lasting, particularly in subarctic, boreal environments where vegetation conversion can take decades. Located in the Boreal Plains Ecozone, the Pine Point Mine was an extensive open pit operation that underwent little reclamation when it shut down in 1988. We apply remote sensing and landscape ecology methods to quantify land cover change in the 20 years following the mine's closure. Using a time series of near-anniversary Landsat images, we performed a supervised classification to differentiate seven land cover classes. We used raster algebra and landscape metrics to track changes in land cover composition and configuration in the 20 years since the mine shut down. We compared our results with a site in Wood Buffalo National Park that was never subjected to extensive anthropogenic disturbance. This space-for-time substitution provided an analog for how the ecosystem in the Pine Point region might have developed in the absence of industrial mineral development. We found that the dense conifer class was dominant in the park and exhibited larger and more contiguous patches than at the mine site. Bare land at the mine site showed little conversion through time. While the combination of raster algebra and landscape metrics allowed us to track broad changes in land cover composition and configuration, improved access to affordable, high-resolution imagery is necessary to effectively monitor land cover dynamics at abandoned mines.

  3. Tappable Pine Trees: Commercial Production of Terpene Biofuels in Pine

    Energy Technology Data Exchange (ETDEWEB)

    None

    2012-01-01

    PETRO Project: The University of Florida is working to increase the amount of turpentine in harvested pine from 4% to 20% of its dry weight. While enhanced feedstocks for biofuels have generally focused on fuel production from leafy plants and grasses, the University of Florida is experimenting with enhancing fuel production in a species of pine that is currently used in the paper pulping industry. Pine trees naturally produce around 3-5% terpene content in the wood—terpenes are the energy-dense fuel molecules that are the predominant components of turpentine. The team aims to increase the terpene storage potential and production capacity while improving the terpene composition to a point at which the trees could be tapped while alive, like sugar maples. Growth and production from these trees will take years, but this pioneering technology could have significant impact in making available an economical and domestic source of aviation and diesel biofuels.

  4. Noxubee National Wildlife Refuge Pine Project Area

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Noxubee National Wildlife Refuge Pine-grassland Project includes 261 ac of mid– to late-rotation loblolly pine which were managed with a heavy pine thin (50-60...

  5. Silvical characteristics of Virginia pine (Pinus virginiana)

    Science.gov (United States)

    Albert G., Jr. Snow

    1960-01-01

    Virginia pine has finally attained its rightful place among trees of commercial importance. It has done so in spite of being called "scrub pine" and "poverty pine" - and in spite of the term "forest weed", which has lingered long in the speech of oldtimers who remember the days of timber-plenty.

  6. Effects of thinning on temperature dynamics and mountain pine beetle activity in a lodgepole pine stand. Forest Service research paper

    Energy Technology Data Exchange (ETDEWEB)

    Bartos, D.L.; Booth, G.D.

    1994-12-01

    Temperature measurements were made to better understand the role of microclimate on mountain pine beetle, Dendroctonus pondersae Hopkins (Coleoptera:Scolytidae), activity as a result of thinning lodgepole pine stands. Sampling was done over 61 days on the north slope of the Unita Mountain Range in Northeastern Utah. Principal components analysis was applied to all temperature variables. Most of the variation was attributed to two variables, coolest part of the night and hottest part of the day. The thinned stand was approximately 1 deg. C warmer than the unthinned stand.

  7. Biosensors for functional food safety and analysis.

    Science.gov (United States)

    Lavecchia, Teresa; Tibuzzi, Arianna; Giardi, Maria Teresa

    2010-01-01

    The importance of safety and functionality analysis of foodstuffs and raw materials is supported by national legislations and European Union (EU) directives concerning not only the amount of residues of pollutants and pathogens but also the activity and content of food additives and the health claims stated on their labels. In addition, consumers' awareness of the impact of functional foods' on their well-being and their desire for daily healthcare without the intake pharmaceuticals has immensely in recent years. Within this picture, the availability of fast, reliable, low cost control systems to measure the content and the quality of food additives and nutrients with health claims becomes mandatory, to be used by producers, consumers and the governmental bodies in charge of the legal supervision of such matters. This review aims at describing the most important methods and tools used for food analysis, starting with the classical methods (e.g., gas-chromatography GC, high performance liquid chromatography HPLC) and moving to the use of biosensors-novel biological material-based equipments. Four types of bio-sensors, among others, the novel photosynthetic proteins-based devices which are more promising and common in food analysis applications, are reviewed. A particular highlight on biosensors for the emerging market of functional foods is given and the most widely applied functional components are reviewed with a comprehensive analysis of papers published in the last three years; this report discusses recent trends for sensitive, fast, repeatable and cheap measurements, focused on the detection of vitamins, folate (folic acid), zinc (Zn), iron (Fe), calcium (Ca), fatty acids (in particular Omega 3), phytosterols and phytochemicals. A final market overview emphasizes some practical aspects ofbiosensor applications.

  8. Medial Cochlear Efferent Function: A Theoretical Analysis

    Science.gov (United States)

    Mountain, David C.

    2011-11-01

    Since the discovery of the cochlear efferent system, many hypotheses have been put forth for its function. These hypotheses for its function range from protecting the cochlea from over stimulation to improving the detection of sounds in noise. It is known that the medial efferent system innervates the outer hair cells and that stimulation of this system reduces basilar membrane and auditory nerve sensitivity which suggests that this system acts to decrease the gain of the cochlear amplifier. Here I present modeling results as well as analysis of published experimental data that suggest that the function of the medial efferent reflex is to decrease the cochlear amplifier gain by just the right amount so that the nonlinearity in the basilar membrane response lines up perfectly with the inner hair cell nonlinear transduction process to produce a hair cell receptor potential that is proportional to the logarithm of the sound pressure level.

  9. Comparison of methods for proanthocyanidin extraction from pine (Pinus densiflora) needles and biological activities of the extracts.

    Science.gov (United States)

    Kim, Nam-Young; Jang, Min-Kyung; Lee, Dong-Geun; Yu, Ki Hwan; Jang, Hyeji; Kim, Mihyang; Kim, Sung Gu; Yoo, Byung Hong; Lee, Sang-Hyeon

    2010-02-01

    Flavonoids are known to be effective scavengers of free radicals. In particular, proanthocyanidins are flavonoids that possess cardiovascular protection, antioxidative activities, and immunomodulatory activities. Here, we evaluated proanthocyanidin contents in the total polyphenolic compounds of pine needle extracts prepared by hot water, ethanol, hexane, hot water-hexane (HWH), and hot water-ethanol (HWE). Analysis of each extract indicated that the ethanol extract contained the highest proanthocyanidin concentration. The HWH and hexane extracts also contained relatively high concentrations of proanthocyanidin. On the other hand, proanthocyanidin content analyses out of the total polyphenolic compounds indicated that the HWH extract contained the highest content. These results suggest that HWH extraction is a suitable method to obtain an extract with a high level of pure proanthocyanidins and a relatively high yield. The HWH extract possessed superior activity in diverse antioxidative analyses such as 2,2-diphenyl-1-picrylhydrazyl (DPPH), ferrous ion chelating (FIC), and ferric-ion reducing power (FRAP) assays. In addition, upon assessing the effects of the pine needle extracts on macrophages (Raw 264.7 cell), the HWH extract exhibited the highest activity. In this study, we discerned an efficient extraction method to achieve relatively pure proanthocyanidins from pine needles and evaluated the biological functions of the resulting extract, which could potentially be used for its efficacious components in functional food products.

  10. Industrial entrepreneurial network: Structural and functional analysis

    Science.gov (United States)

    Medvedeva, M. A.; Davletbaev, R. H.; Berg, D. B.; Nazarova, J. J.; Parusheva, S. S.

    2016-12-01

    Structure and functioning of two model industrial entrepreneurial networks are investigated in the present paper. One of these networks is forming when implementing an integrated project and consists of eight agents, which interact with each other and external environment. The other one is obtained from the municipal economy and is based on the set of the 12 real business entities. Analysis of the networks is carried out on the basis of the matrix of mutual payments aggregated over the certain time period. The matrix is created by the methods of experimental economics. Social Network Analysis (SNA) methods and instruments were used in the present research. The set of basic structural characteristics was investigated: set of quantitative parameters such as density, diameter, clustering coefficient, different kinds of centrality, and etc. They were compared with the random Bernoulli graphs of the corresponding size and density. Discovered variations of random and entrepreneurial networks structure are explained by the peculiarities of agents functioning in production network. Separately, were identified the closed exchange circuits (cyclically closed contours of graph) forming an autopoietic (self-replicating) network pattern. The purpose of the functional analysis was to identify the contribution of the autopoietic network pattern in its gross product. It was found that the magnitude of this contribution is more than 20%. Such value allows using of the complementary currency in order to stimulate economic activity of network agents.

  11. Soil contamination with silver nanoparticles reduces Bishop pine growth and ectomycorrhizal diversity on pine roots

    Science.gov (United States)

    Sweet, M. J.; Singleton, I.

    2015-11-01

    Soil contamination by silver nanoparticles (AgNP) is of potential environmental concern but little work has been carried out on the effect of such contamination on ectomycorrhizal fungi (EMF). EMF are essential to forest ecosystem functions as they are known to enhance growth of trees by nutrient transfer. In this study, soil was experimentally contaminated with AgNP (0, 350 and 790 mg Ag/kg) and planted with Bishop pine seedlings. The effect of AgNP was subsequently measured, assessing variation in pine growth and ectomycorrhizal diversity associated with the root system. After only 1 month, the highest AgNP level had significantly reduced the root length of pine seedlings, which in turn had a small effect on above ground plant biomass. However, after 4 months growth, both AgNP levels utilised had significantly reduced both pine root and shoot biomass. For example, even the lower levels of AgNP (350 mg Ag/kg) soil, reduced fresh root biomass by approximately 57 %. The root systems of the plants grown in AgNP-contaminated soils lacked the lateral and fine root development seen in the control plants (no AgNP). Although, only five different genera of EMF were found on roots of the control plants, only one genus Laccaria was found on roots of plants grown in soil containing 350 mg AgNP/kg. At the higher levels of AgNP contamination, no EMF were observed. Furthermore, extractable silver was found in soils containing AgNP, indicating potential dissolution of silver ions (Ag+) from the solid AgNP.

  12. Soil contamination with silver nanoparticles reduces Bishop pine growth and ectomycorrhizal diversity on pine roots

    Energy Technology Data Exchange (ETDEWEB)

    Sweet, M. J., E-mail: m.sweet@derby.ac.uk [University of Derby, Environmental Sustainability Research Centre, College of Life and Natural Sciences (United Kingdom); Singleton, I. [Newcastle University, School of Biology (United Kingdom)

    2015-11-15

    Soil contamination by silver nanoparticles (AgNP) is of potential environmental concern but little work has been carried out on the effect of such contamination on ectomycorrhizal fungi (EMF). EMF are essential to forest ecosystem functions as they are known to enhance growth of trees by nutrient transfer. In this study, soil was experimentally contaminated with AgNP (0, 350 and 790 mg Ag/kg) and planted with Bishop pine seedlings. The effect of AgNP was subsequently measured, assessing variation in pine growth and ectomycorrhizal diversity associated with the root system. After only 1 month, the highest AgNP level had significantly reduced the root length of pine seedlings, which in turn had a small effect on above ground plant biomass. However, after 4 months growth, both AgNP levels utilised had significantly reduced both pine root and shoot biomass. For example, even the lower levels of AgNP (350 mg Ag/kg) soil, reduced fresh root biomass by approximately 57 %. The root systems of the plants grown in AgNP-contaminated soils lacked the lateral and fine root development seen in the control plants (no AgNP). Although, only five different genera of EMF were found on roots of the control plants, only one genus Laccaria was found on roots of plants grown in soil containing 350 mg AgNP/kg. At the higher levels of AgNP contamination, no EMF were observed. Furthermore, extractable silver was found in soils containing AgNP, indicating potential dissolution of silver ions (Ag+) from the solid AgNP.

  13. Semen analysis and sperm function testing

    Institute of Scientific and Technical Information of China (English)

    Daniel R Franken; Sergio Oehninger

    2012-01-01

    Despite controversy regarding the clinical value of semen analysis,male fertility investigation still relies on a standardized analysis of the semen parameters.This is especially true for infertility clinics in both developing and developed countries.Other optional tests or sophisticated technologies have not been widely applied.The current review addresses important changes in the analysis of semen as described in the new World Health Organization (WHO) manual for semen analysis.The most important change in the manual is the use of evidence-based publications as references to determine cutoff values for normality.Apart from the above mentioned changes,the initial evaluation and handling methods remain,in most instances,the same as in previous editions.Furthermore,the review evaluates the importance of quality control in andrology with emphasis on the evaluation of sperm morphology.WHO sperm morphology training programmes for Sub-Saharan countries were initiated at Tygerberg Hospital in 1995.1he external quality control programme has ensured that the majority of participants have maintained their morphological reading skills acquired during initial training.This review reports on current sperm functional tests,such as the induced acrosome reaction,and sperm-zona pellucida binding assays,as well as the impact of sperm qualitv in terms of DNA integritv,and the relationship of sperm function tests to sperm morphologv.

  14. Evidence that the negative relationship between seed mass and relative growth rate is not physiological but linked to species identity: a within-family analysis of Scots pine.

    Science.gov (United States)

    Castro, Jorge; Reich, Peter B; Sánchez-Miranda, Angela; Guerrero, Juan D

    2008-07-01

    Seed mass and relative growth rate (RGR) are important determinants of early seedling growth, and hence seedling establishment. Although a positive interspecific relationship between seed mass and seedling dry mass is well established, much less is known about the relationships among seed mass, seedling mass and RGR within species. We examined relationships among seed mass, seedling mass and RGR within and among maternal plant lines of Scots pine (Pinus sylvestris L.). To assess the effects of seed mass and maternal origin on RGR, individual seeds from two seed crops (years 2004 and 2005) of ten maternal plants growing under nursery conditions were weighed and then germinated. Seed mass was strongly determined by maternal plant, and seedling mass was largely determined by seed mass, with a positive correlation between these variables both across and within maternal plants. In contrast, RGR was weakly related to seed mass, with no consistent pattern in the sign of the relationship. It is well known that species differ in RGR and that RGR is related to seed mass across species. Lack of consistent evidence for this relationship within maternal lines, and for Scots pine overall, suggests that the relationship is not directly causal, but reflects consistent evolutionary covariation in these two physiologically independent traits.

  15. Composition of the bacterial community in the gut of the pine engraver, Ips pini (Say) (Coloptera) colonizing red pine

    Science.gov (United States)

    Italo Jr. Delalibera; Archana Vasanthakumar; Benjamin J. Burwitz; Patrick D. Schloss; Kier D. Klepzig; Jo Handelsman; Kenneth F. Raffa

    2007-01-01

    The gut bacterial community of a bark beetle, the pine engraver Ips pini (Say), was characterized using culture-dependent and culture-independent methods. Bacteria from individual guts of larvae, pupae and adults were cultured and DNA was extracted from samples of pooled larval guts. Analysis of 16S rRNA gene sequences amplified directly from the gut...

  16. Effects of spring prescribed fire on short-term, leaf-level photosynthesis and water use efficiency in longleaf pine

    Science.gov (United States)

    John K. Jackson; Dylan N. Dillaway; Michael C. Tyree; Mary Anne Sword Sayer

    2015-01-01

    Fire is a natural and important environmental disturbance influencing the structure, function, and composition of longleaf pine (Pinus palustris Mill.) ecosystems. However, recovery of young pines to leaf scorch may involve changes in leaf physiology, which could influence leaf water-use efficiency (WUE). This work is part of a larger seasonal...

  17. Anaphylaxis to pine nuts and immunological cross-reactivity with pine pollen proteins.

    Science.gov (United States)

    Senna, G; Roncarolo, D; Dama, A; Mistrello, G

    2000-01-01

    Despite the wide use of pine nuts, the fruit of Pinus pinea, only a few reports of allergic reactions to them have been published. We present herein a case of food allergy to pine nuts in a patient who showed no clinical symptoms to pine pollen despite the presence in her serum of specific IgE antibodies. In order to verify whether the reaction against pine nuts was IgE mediated, specific IgE against pine nuts and pollen were evaluated by skin-prick test, prick by prick and RAST. Immunoblotting and immunoblotting-inhibition were used to evaluate the allergenic components of both extracts and their cross-reactivity. Prick by prick with fresh pine nuts and RAST with pine nut and pine pollen extracts showed that the patient had high levels of specific IgE against both extracts. Immunoblotting experiments showed the presence in serum of IgE antibodies against several components in pine nuts and pollen. Immunoblotting-inhibition experiments demonstrated the presence of some cross-reacting components. These data confirm the existence of food allergy induced by pine nuts. This sensitization to pine nuts developed with no symptoms of pine pollinosis. Development of pollinosis may require a longer time of exposure to allergens. Based on the cross-reactivity between pine nut and pine pollen extracts, cosensitization to these two allergens could be possible.

  18. Effects of Endobacterium (Stenotrophomonas maltophilia on Pathogenesis-Related Gene Expression of Pine Wood Nematode (Bursaphelenchus xylophilus and Pine Wilt Disease

    Directory of Open Access Journals (Sweden)

    Long-Xi He

    2016-05-01

    Full Text Available Pine wilt disease (PWD caused by the pine wood nematode (PWN, Bursaphelenchus xylophilus, is responsible for devastating epidemics in pine trees in Asia and Europe. Recent studies showed that bacteria carried by the PWN might be involved in PWD. However, the molecular mechanism of the interaction between bacteria and the PWN remained unclear. Now that the whole genome of B. xylophilus (Bursaphelenchus xylophilus is published, transcriptome analysis is a unique method to study the role played by bacteria in PWN. In this study, the transcriptome of aseptic B. xylophilus, B. xylophilus treated with endobacterium (Stenotrophomonas maltophilia NSPmBx03 and fungus B. xylophilus were sequenced. We found that 61 genes were up-regulated and 830 were down-regulated in B. xylophilus after treatment with the endobacterium; 178 genes were up-regulated and 1122 were down-regulated in fungus B. xylophilus compared with aseptic B. xylophilus. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses were used to study the significantly changed biological functions and pathways for these differentially expressed genes. Many pathogenesis-related genes, including glutathinone S-transferase, pectate lyase, ATP-binding cassette transporter and cytochrome P450, were up-regulated after B. xylophilus were treated with the endobacterium. In addition, we found that bacteria enhanced the virulence of PWN. These findings indicate that endobacteria might play an important role in the development and virulence of PWN and will improve our understanding of the regulatory mechanisms involved in the interaction between bacteria and the PWN.

  19. Identification of caleosin and two oleosin isoforms in oil bodies of pine megagametophytes.

    Science.gov (United States)

    Pasaribu, Buntora; Chung, Tse-Yu; Chen, Chii-Shiarng; Wang, Song-Liang; Jiang, Pei-Luen; Tzen, Jason T C

    2014-09-01

    Numerous oil bodies of 0.2-2 μm occupied approximately 80% of intracellular space in mature pine (Pinus massoniana) megagametophytes. They were stably isolated and found to comprise mostly triacylglycerols as examined by thin layer chromatography analysis and confirmed by both Nile red and BODIPY stainings. Fatty acids released from the triacylglycerols of pine oil bodies were mainly unsaturated, including linoleic acid (60%), adrenic acid (12.3%) and vaccenic acid (9.7%). Proteins extracted from pine oil bodies were subjected to immunological cross-recognition, and the results showed that three proteins of 28, 16 and 14 kDa were detected by antibodies against sesame seed caleosin, sesame oleosin-L and lily pollen oleosin-P, respectively. Complete cDNA fragments encoding these three pine oil-body proteins, tentatively named caleosin, oleosin-L and oleosin-G, were obtained by PCR cloning and further confirmed by mass spectrometric analysis. Consistently, phylogenetic tree analyses showed that pine caleosin was closely-related to the caleosin of cycad megagametophyte among known caleosin sequences. While pine oleosin-L was found clustered with seed oleosin isoforms of angiosperm species, oleosin-G was distinctively grouped with the oleosin-P of lily pollen. The oleosin-G identified in pine megagametophytes seems to represent a new class of seed oleosin isoform evolutionarily close to the pollen oleosin-P.

  20. Functional Analysis of Arabidopsis Sucrose Transporters

    Energy Technology Data Exchange (ETDEWEB)

    John M. Ward

    2009-03-31

    Sucrose is the main photosynthetic product that is transported in the vasculature of plants. The long-distance transport of carbohydrates is required to support the growth and development of net-importing (sink) tissues such as fruit, seeds and roots. This project is focused on understanding the transport mechanism sucrose transporters (SUTs). These are proton-coupled sucrose uptake transporters (membrane proteins) that are required for transport of sucrose in the vasculature and uptake into sink tissues. The accomplishments of this project included: 1) the first analysis of substrate specificity for any SUT. This was accomplished using electrophysiology to analyze AtSUC2, a sucrose transporter from companion cells in Arabidopsis. 2) the first analysis of the transport activity for a monocot SUT. The transport kinetics and substrate specificity of HvSUT1 from barley were studied. 3) the first analysis of a sucrose transporter from sugarcane. and 4) the first analysis of transport activity of a sugar alcohol transporter homolog from plants, AtPLT5. During this period four primary research papers, funded directly by the project, were published in refereed journals. The characterization of several sucrose transporters was essential for the current effort in the analysis of structure/function for this gene family. In particular, the demonstration of strong differences in substrate specificity between type I and II SUTs was important to identify targets for site-directed mutagenesis.

  1. FANTOM: Functional and taxonomic analysis of metagenomes

    Directory of Open Access Journals (Sweden)

    Sanli Kemal

    2013-02-01

    Full Text Available Abstract Background Interpretation of quantitative metagenomics data is important for our understanding of ecosystem functioning and assessing differences between various environmental samples. There is a need for an easy to use tool to explore the often complex metagenomics data in taxonomic and functional context. Results Here we introduce FANTOM, a tool that allows for exploratory and comparative analysis of metagenomics abundance data integrated with metadata information and biological databases. Importantly, FANTOM can make use of any hierarchical database and it comes supplied with NCBI taxonomic hierarchies as well as KEGG Orthology, COG, PFAM and TIGRFAM databases. Conclusions The software is implemented in Python, is platform independent, and is available at http://www.sysbio.se/Fantom.

  2. Bioprospecting and Functional Analysis of Neglected Environments

    DEFF Research Database (Denmark)

    Vogt, Josef Korbinian

    of functional relationships in single organisms and environments. The sequencing data can also be mined for novel compounds and enzymes. The process of exploiting biological resources for commercial use is known as bioprospecting. This PhD thesis describes the concept of bioprospecting in the post genomic era...... on Biological Diversity (explained in Chapter 3). Proteolytic enzymes – described in Chapter 4 – are the target for bioprospecting due to their high market value. Section II describes methods used for the analysis of metagenomic and RNA-seq datasets, including Manuscript I, which includes the taxonomic...

  3. Restoration planting options for limber pines in Colorado and Wyoming

    Science.gov (United States)

    Anne Marie Casper; William R. Jacobi; Anna W. Schoettle; Kelly S. Burns

    2011-01-01

    Limber Pine (Pinus flexilis) populations in the southern Rocky Mountains are severely threatened by the combined impacts of mountain pine beetles and white pine blister rust. Limber pineʼs critical role in these high elevation ecosystems heightens the importance of mitigating these impacts. To develop forest-scale planting methods, six limber pine seedling...

  4. Pine needle abortion biomarker detected in bovine fetal fluids

    Science.gov (United States)

    Pine needle abortion is a naturally occurring condition in free-range cattle caused by the consumption of pine needles from select species of cypress, juniper, pine, and spruce trees. Confirmatory diagnosis of pine needle abortion has previously relied on a combined case history of pine needle cons...

  5. Functional analysis and the Feynman operator calculus

    CERN Document Server

    Gill, Tepper L

    2016-01-01

    This book provides the mathematical foundations for Feynman's operator calculus and for the Feynman path integral formulation of quantum mechanics as a natural extension of analysis and functional analysis to the infinite-dimensional setting. In one application, the results are used to prove the last two remaining conjectures of Freeman Dyson for quantum electrodynamics. In another application, the results are used to unify methods and weaken domain requirements for non-autonomous evolution equations. Other applications include a general theory of Lebesgue measure on Banach spaces with a Schauder basis and a new approach to the structure theory of operators on uniformly convex Banach spaces. This book is intended for advanced graduate students and researchers.

  6. Functional Analysis of Split Airport Business Processes

    Directory of Open Access Journals (Sweden)

    Slavko Roguljić

    2005-01-01

    Full Text Available Optimisation of business processes represents the basis ofimproving the competitiveness of the Ailport as a service pro·vider. This directly implies not only the analysis and creation ofthe model of current organisation and technological processesbut also the necessity to measure these processes in order to reorganiseand improve them. Consequently, the Split AitportAuthority considers the functional analysis of its business processesas one of the major issues. Since in April2002 the analysisand modelling were completed in all the organisational unitsof handling setvice and cargo department organisational structures,both of the organisational structure of these services, aswell as of processes of aircraft, passenger, baggage and cargohandling, this paper will analyse the implementation of ARISComputer System at Split Airport Ground Handling Process.

  7. A Complexity Analysis of Functional Interpretations

    DEFF Research Database (Denmark)

    Hernest, Mircea-Dan; Kohlenbach, Ulrich

    2003-01-01

    We give a quantitative analysis of G ̈odel’s functional interpretation and its monotone variant. The two have been used for the extraction of programs and numerical bounds as well as for conservation results. They apply both to (semi-)intuitionistic as well as (combined with negative translation......) classical proofs. The proofs may be formalized in systems ranging from weak base systems to arithmetic and analysis (and numerous fragments of these). We give upper bounds in basic proof data on the depth, size, maximal type degree and maximal type arity of the extracted terms as well as on the depth...... of the verifying proof. In all cases terms of size linear in the size of the proof at input can be extracted and the corresponding extraction algorithms have cubic worst-time complexity. The verifying proofs have depth linear in the depth of the proof at input and the maximal size of a formula of this proof....

  8. Data for the size of cholesterol-fat micelles as a function of bile salt concentration and the physico-chemical properties of six liquid experimental pine-derived phytosterol formulations in a cholesterol-containing artificial intestine fluid

    Directory of Open Access Journals (Sweden)

    Jinsoo Yi

    2017-02-01

    Full Text Available The data in this paper are additional information to the research article entiltled “Inhibition of cholesterol transport in an intestine cell model by pine-derived phytosterols” (Yi et al.,2016 [1]. The data derived from the measurement on six liquid formulations of commercial pine-derived phytosterol (CPP by dynamic light scattering. The data cover micelle size and the zeta-potential for formulations with cholesterol including monoglyceride, oleic acid, and bile salt. The data demonstrate the critical effect of the bile salt concentration on the size of cholesterol-digested fat micelles.

  9. Functional analysis of the Aspergillus nidulans kinome.

    Science.gov (United States)

    De Souza, Colin P; Hashmi, Shahr B; Osmani, Aysha H; Andrews, Peter; Ringelberg, Carol S; Dunlap, Jay C; Osmani, Stephen A

    2013-01-01

    The filamentous fungi are an ecologically important group of organisms which also have important industrial applications but devastating effects as pathogens and agents of food spoilage. Protein kinases have been implicated in the regulation of virtually all biological processes but how they regulate filamentous fungal specific processes is not understood. The filamentous fungus Aspergillus nidulans has long been utilized as a powerful molecular genetic system and recent technical advances have made systematic approaches to study large gene sets possible. To enhance A. nidulans functional genomics we have created gene deletion constructs for 9851 genes representing 93.3% of the encoding genome. To illustrate the utility of these constructs, and advance the understanding of fungal kinases, we have systematically generated deletion strains for 128 A. nidulans kinases including expanded groups of 15 histidine kinases, 7 SRPK (serine-arginine protein kinases) kinases and an interesting group of 11 filamentous fungal specific kinases. We defined the terminal phenotype of 23 of the 25 essential kinases by heterokaryon rescue and identified phenotypes for 43 of the 103 non-essential kinases. Uncovered phenotypes ranged from almost no growth for a small number of essential kinases implicated in processes such as ribosomal biosynthesis, to conditional defects in response to cellular stresses. The data provide experimental evidence that previously uncharacterized kinases function in the septation initiation network, the cell wall integrity and the morphogenesis Orb6 kinase signaling pathways, as well as in pathways regulating vesicular trafficking, sexual development and secondary metabolism. Finally, we identify ChkC as a third effector kinase functioning in the cellular response to genotoxic stress. The identification of many previously unknown functions for kinases through the functional analysis of the A. nidulans kinome illustrates the utility of the A. nidulans gene

  10. Functional analysis of the Aspergillus nidulans kinome.

    Directory of Open Access Journals (Sweden)

    Colin P De Souza

    Full Text Available The filamentous fungi are an ecologically important group of organisms which also have important industrial applications but devastating effects as pathogens and agents of food spoilage. Protein kinases have been implicated in the regulation of virtually all biological processes but how they regulate filamentous fungal specific processes is not understood. The filamentous fungus Aspergillus nidulans has long been utilized as a powerful molecular genetic system and recent technical advances have made systematic approaches to study large gene sets possible. To enhance A. nidulans functional genomics we have created gene deletion constructs for 9851 genes representing 93.3% of the encoding genome. To illustrate the utility of these constructs, and advance the understanding of fungal kinases, we have systematically generated deletion strains for 128 A. nidulans kinases including expanded groups of 15 histidine kinases, 7 SRPK (serine-arginine protein kinases kinases and an interesting group of 11 filamentous fungal specific kinases. We defined the terminal phenotype of 23 of the 25 essential kinases by heterokaryon rescue and identified phenotypes for 43 of the 103 non-essential kinases. Uncovered phenotypes ranged from almost no growth for a small number of essential kinases implicated in processes such as ribosomal biosynthesis, to conditional defects in response to cellular stresses. The data provide experimental evidence that previously uncharacterized kinases function in the septation initiation network, the cell wall integrity and the morphogenesis Orb6 kinase signaling pathways, as well as in pathways regulating vesicular trafficking, sexual development and secondary metabolism. Finally, we identify ChkC as a third effector kinase functioning in the cellular response to genotoxic stress. The identification of many previously unknown functions for kinases through the functional analysis of the A. nidulans kinome illustrates the utility of the

  11. Growth of a Pine Tree

    Science.gov (United States)

    Rollinson, Susan Wells

    2012-01-01

    The growth of a pine tree is examined by preparing "tree cookies" (cross-sectional disks) between whorls of branches. The use of Christmas trees allows the tree cookies to be obtained with inexpensive, commonly available tools. Students use the tree cookies to investigate the annual growth of the tree and how it corresponds to the number of whorls…

  12. Growth of a Pine Tree

    Science.gov (United States)

    Rollinson, Susan Wells

    2012-01-01

    The growth of a pine tree is examined by preparing "tree cookies" (cross-sectional disks) between whorls of branches. The use of Christmas trees allows the tree cookies to be obtained with inexpensive, commonly available tools. Students use the tree cookies to investigate the annual growth of the tree and how it corresponds to the number of whorls…

  13. Biosignals Analysis for Kidney Function Effect Analysis of Fennel Aromatherapy

    Directory of Open Access Journals (Sweden)

    Bong-Hyun Kim

    2015-01-01

    Full Text Available Human effort in order to enjoy a healthy life is diverse. IT technology to these analyzes, the results of development efforts, it has been applied. Therefore, I use the care and maintenance diagnostic health management and prevention than treatment. In particular, the aromatherapy treatment easy to use without the side effects there is no irritation, are widely used in modern society. In this paper, we measured the aroma effect by applying a biosignal analysis techniques; an experiment was performed to analyze. In particular, we design methods and processes of research based on the theory aroma that affect renal function. Therefore, in this paper, measuring the biosignals and after fennel aromatherapy treatment prior to the enforcement of the mutual comparison, through the analysis, studies were carried out to analyze the effect of fennel aromatherapy therapy on kidney function.

  14. Structural and functional analysis of rice genome

    Indian Academy of Sciences (India)

    Akhilesh K. Tyagi; Jitendra P. Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anupama Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V. Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma

    2004-04-01

    Rice is an excellent system for plant genomics as it represents a modest size genome of 430 Mb. It feeds more than half the population of the world. Draft sequences of the rice genome, derived by whole-genome shotgun approach at relatively low coverage (4–6 X), were published and the International Rice Genome Sequencing Project (IRGSP) declared high quality (>10 X), genetically anchored, phase 2 level sequence in 2002. In addition, phase 3 level finished sequence of chromosomes 1, 4 and 10 (out of 12 chromosomes of rice) has already been reported by scientists from IRGSP consortium. Various estimates of genes in rice place the number at > 50,000. Already, over 28,000 full-length cDNAs have been sequenced, most of which map to genetically anchored genome sequence. Such information is very useful in revealing novel features of macro- and micro-level synteny of rice genome with other cereals. Microarray analysis is unraveling the identity of rice genes expressing in temporal and spatial manner and should help target candidate genes useful for improving traits of agronomic importance. Simultaneously, functional analysis of rice genome has been initiated by marker-based characterization of useful genes and employing functional knock-outs created by mutation or gene tagging. Integration of this enormous information is expected to catalyze tremendous activity on basic and applied aspects of rice genomics.

  15. Problems in real and functional analysis

    CERN Document Server

    Torchinsky, Alberto

    2015-01-01

    It is generally believed that solving problems is the most important part of the learning process in mathematics because it forces students to truly understand the definitions, comb through the theorems and proofs, and think at length about the mathematics. The purpose of this book is to complement the existing literature in introductory real and functional analysis at the graduate level with a variety of conceptual problems (1,457 in total), ranging from easily accessible to thought provoking, mixing the practical and the theoretical aspects of the subject. Problems are grouped into ten chapters covering the main topics usually taught in courses on real and functional analysis. Each of these chapters opens with a brief reader's guide stating the needed definitions and basic results in the area and closes with a short description of the problems. The Problem chapters are accompanied by Solution chapters, which include solutions to two-thirds of the problems. Students can expect the solutions to be written in ...

  16. Introduction to measure theory and functional analysis

    CERN Document Server

    Cannarsa, Piermarco

    2015-01-01

    This book introduces readers to theories that play a crucial role in modern mathematics, such as integration and functional analysis, employing a unifying approach that views these two subjects as being deeply intertwined. This feature is particularly evident in the broad range of problems examined, the solutions of which are often supported by generous hints. If the material is split into two courses, it can be supplemented by additional topics from the third part of the book, such as functions of bounded variation, absolutely continuous functions, and signed measures. This textbook addresses the needs of graduate students in mathematics, who will find the basic material they will need in their future careers, as well as those of researchers, who will appreciate the self-contained exposition which requires no other preliminaries than basic calculus and linear algebra.

  17. Functional data analysis of generalized regression quantiles

    KAUST Repository

    Guo, Mengmeng

    2013-11-05

    Generalized regression quantiles, including the conditional quantiles and expectiles as special cases, are useful alternatives to the conditional means for characterizing a conditional distribution, especially when the interest lies in the tails. We develop a functional data analysis approach to jointly estimate a family of generalized regression quantiles. Our approach assumes that the generalized regression quantiles share some common features that can be summarized by a small number of principal component functions. The principal component functions are modeled as splines and are estimated by minimizing a penalized asymmetric loss measure. An iterative least asymmetrically weighted squares algorithm is developed for computation. While separate estimation of individual generalized regression quantiles usually suffers from large variability due to lack of sufficient data, by borrowing strength across data sets, our joint estimation approach significantly improves the estimation efficiency, which is demonstrated in a simulation study. The proposed method is applied to data from 159 weather stations in China to obtain the generalized quantile curves of the volatility of the temperature at these stations. © 2013 Springer Science+Business Media New York.

  18. Computer assistance in clinical functional analysis.

    Science.gov (United States)

    Ahlers, M O; Jakstat, H A

    2002-10-01

    The use of computers in the dental practice has been primarily restricted to the acquisition of billing data. Additional possibilities for use of PCs exist in diagnostic data acquisition and evaluation; clinical functional analysis seems a particularly suitable application. Such software is now available: CMDfact. Dentally, it is based on a previously developed and published examination and documentation system, the graphic user interface of which is used in the newly developed software. After the examination data have been acquired by mouse click or numerical entry, these are available for evaluation. A special function, the "Diagnosis pilot" is integrated to support the user. This helps in the assignment of the appropriate "Initial diagnoses", since it brings together the individually existing principal symptoms and suitable diagnoses for the initial diagnosis in question and also states which diagnoses "would be appropriate" for this, but are not available. With 3D animation, the software also helps the dentist to explain aspects of CMD to patients. The software also assists the dentist with a detailed multimedia help system, which provides context-sensitive help for every examination step. These help functions explain the sense of the relevant examinations, their performance and evaluation in the form of short texts and explanatory photographs and videos.

  19. Functional data analysis in forecasting Serbian fertility

    Directory of Open Access Journals (Sweden)

    Nikitović Vladimir

    2011-01-01

    Full Text Available A new approach, combining functional data analysis and principal components decomposition in order to forecasting demographic rates, introduced recently by Hyndman and his associates, is tested on official data series of Serbian age-specific fertility rates available for period 1950-2009. The original concept of the method with its extensions and improvements is applied to region-specific data for the country (Central Serbia and Vojvodina. One of the most important benefits of the method reflected in confirmation that is essentially to model and forecast more than one principal component in order to adequately address sources of variation in fertility. Similarly, modelling and forecasting fertility rates with regards to age and not total fertility rates shows how important it is for the recognized tendency of postponing childbearing in Serbia to be included in coefficients of functional time series. Besides, the method is based completely on evaluation of historical data, without subjective views of forecasters having to be taken into account. Coherent functional product ratio forecasts of two regions proved to be highly convergent on the long-term not allowing for outliers to contaminate the forecast.

  20. Transfer function analysis of thermospheric perturbations

    Science.gov (United States)

    Mayr, H. G.; Harris, I.; Varosi, F.; Herrero, F. A.; Spencer, N. W.

    1986-01-01

    Applying perturbation theory, a spectral model in terms of vectors spherical harmonics (Legendre polynomials) is used to describe the short term thermospheric perturbations originating in the auroral regions. The source may be Joule heating, particle precipitation or ExB ion drift-momentum coupling. A multiconstituent atmosphere is considered, allowing for the collisional momentum exchange between species including Ar, O2, N2, O, He and H. The coupled equations of energy, mass and momentum conservation are solved simultaneously for the major species N2 and O. Applying homogeneous boundary conditions, the integration is carred out from the Earth's surface up to 700 km. In the analysis, the spherical harmonics are treated as eigenfunctions, assuming that the Earth's rotation (and prevailing circulation) do not significantly affect perturbations with periods which are typically much less than one day. Under these simplifying assumptions, and given a particular source distribution in the vertical, a two dimensional transfer function is constructed to describe the three dimensional response of the atmosphere. In the order of increasing horizontal wave numbers (order of polynomials), this transfer function reveals five components. To compile the transfer function, the numerical computations are very time consuming (about 100 hours on a VAX for one particular vertical source distribution). However, given the transfer function, the atmospheric response in space and time (using Fourier integral representation) can be constructed with a few seconds of a central processing unit. This model is applied in a case study of wind and temperature measurements on the Dynamics Explorer B, which show features characteristic of a ringlike excitation source in the auroral oval. The data can be interpreted as gravity waves which are focused (and amplified) in the polar region and then are reflected to propagate toward lower latitudes.

  1. Climate influences on whitebark pine mortality from mountain pine beetle in the Greater Yellowstone Ecosystem.

    Science.gov (United States)

    Buotte, Polly C; Hicke, Jeffrey A; Preisler, Haiganoush K; Abatzoglou, John T; Raffa, Kenneth F; Logan, Jesse A

    2016-12-01

    Extensive mortality of whitebark pine, beginning in the early to mid-2000s, occurred in the Greater Yellowstone Ecosystem (GYE) of the western USA, primarily from mountain pine beetle but also from other threats such as white pine blister rust. The climatic drivers of this recent mortality and the potential for future whitebark pine mortality from mountain pine beetle are not well understood, yet are important considerations in whether to list whitebark pine as a threatened or endangered species. We sought to increase the understanding of climate influences on mountain pine beetle outbreaks in whitebark pine forests, which are less well understood than in lodgepole pine, by quantifying climate-beetle relationships, analyzing climate influences during the recent outbreak, and estimating the suitability of future climate for beetle outbreaks. We developed a statistical model of the probability of whitebark pine mortality in the GYE that included temperature effects on beetle development and survival, precipitation effects on host tree condition, beetle population size, and stand characteristics. Estimated probability of whitebark pine mortality increased with higher winter minimum temperature, indicating greater beetle winter survival; higher fall temperature, indicating synchronous beetle emergence; lower two-year summer precipitation, indicating increased potential for host tree stress; increasing beetle populations; stand age; and increasing percent composition of whitebark pine within a stand. The recent outbreak occurred during a period of higher-than-normal regional winter temperatures, suitable fall temperatures, and low summer precipitation. In contrast to lodgepole pine systems, area with mortality was linked to precipitation variability even at high beetle populations. Projections from climate models indicate future climate conditions will likely provide favorable conditions for beetle outbreaks within nearly all current whitebark pine habitat in the GYE by

  2. Economic Analysis on Monetization of Soil Functions

    Institute of Scientific and Technical Information of China (English)

    Zenglei; XI; Shaoqing; ZHANG

    2013-01-01

    On the basis of making clear diversity characteristics of soil functions and multiple characteristics of income, this paper points out that the monetization of soil functions based functional maintenance and change decision process can be regarded as a game process of different utilization methods at the background of different functions. The balance of this game process will determine monetary value of soil functions. After understanding money and monetization concepts, it introduces that measurability and exchangeability of soil functions provide objective conditions for monetization of soil functions. Finally, it discusses that usefulness value of soil functions provide basis for monetization of soil functions.

  3. 长白山阔叶红松林系统发育和功能性状beta多样性%Phylogenetic and functional beta diversity in a broadleaved Korean pine mixed forest in Changbai Mountains, northeastern China

    Institute of Scientific and Technical Information of China (English)

    王均伟; 侯嫚嫚; 黄利亚; 张君; 周海城; 程艳霞

    2016-01-01

    4 functional traits of 45 woody species ( maximum plant height, leaf area, specific leaf area, and leaf nitrogen contents) in a well-mapped 40 ha broadleaved Korean pine mixed forest plot in Changbai Mountains, Northeast China. Next, we calculated the functional and phylogenetic beta diversity through the Sørensen index and compared observed pattern with null model approach to test for non-random functional and phylogenetic beta diversity at different spatial scales ( radius 10 , 20 , 25 , 50 , and 75 m ) . Our results showed that:1 ) the phylogenetic and functional similarity decreased with distances and increased with grain sizes. 2) All the phylogenetic and functional beta diversity showed non-random pattern. As the increase of grain size, the phylogenetic beta diversity showed random only in the 25--50 m scale, while lower than random in the scales of 10--20 m and 75 m. The functional beta diversity turned from random (10--50 m) to lower than random (75 m) . The results suggest that in the middle and small scales (10--50 m), neutral process is more important, but we cannot rule out the role of niche process, and with the increase of scale, habitat filtering determines the community assembly in the broadleaved Korean pine forest. 3 ) The mismatch between functional and phylogenetic beta diversity patterns could be partly explained by the lack of phylogenetic signal for most traits.

  4. Changes in Woodland Use from Longleaf Pine to Loblolly Pine

    OpenAIRE

    John Schelhas; Indrajit Majumdar; Yaoqi Zhang

    2010-01-01

    There is growing evidence suggesting that the United States’ roots are not in a state of “pristine” nature but rather in a “human-modified landscape” over which Native people have since long exerted vast control and use. The longleaf pine is a typical woodland use largely shaped by fires, lightning and by Native Americans. The frequent fires, which were used to reduce fuels and protect themselves from wildfires, enhance wildlife habitats and for hunting, protect themselves from predators and ...

  5. Best Practices Case Study: Pine Mountain Builders - Pine Mountain, GA

    Energy Technology Data Exchange (ETDEWEB)

    None

    2011-09-01

    Case study of Pine Mountain Builders who worked with DOE’s IBACOS team to achieve HERS scores of 59 on 140 homes built around a wetlands in Georgia. The team used taped rigid foam exterior sheathing and spray foam insulation in the walls and on the underside of the attic for a very tight 1.0 to 1.8 ACH 50 building shell.

  6. Mountain pine beetle in high-elevation five-needle white pine ecosystems

    Science.gov (United States)

    Barbara Bentz; Elizabeth Campbell; Ken Gibson; Sandra Kegley; Jesse Logan; Diana Six

    2011-01-01

    Across western North America mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae, Scolytinae), populations are growing at exponential rates in pine ecosystems that span a wide range of elevations. As temperature increased over the past several decades, the flexible, thermally-regulated life-history strategies of mountain pine beetle have allowed...

  7. Monitoring white pine blister rust infection and mortality in whitebark pine in the Greater Yellowstone ecosystem

    Science.gov (United States)

    Cathie Jean; Erin Shanahan; Rob Daley; Gregg DeNitto; Dan Reinhart; Chuck Schwartz

    2011-01-01

    There is a critical need for information on the status and trend of whitebark pine (Pinus albicaulis) in the Greater Yellowstone Ecosystem (GYE). Concerns over the combined effects of white pine blister rust (WPBR, Cronartium ribicola), mountain pine beetle (MPB, Dendroctonus ponderosae), and climate change prompted an interagency working group to design and implement...

  8. Selection for resistance to white pine blister rust affects the abiotic stress tolerances of limber pine

    Science.gov (United States)

    Patrick J. Vogan; Anna W. Schoettle

    2015-01-01

    Limber pine (Pinus flexilis) mortality is increasing across the West as a result of the combined stresses of white pine blister rust (Cronartium ribicola; WPBR), mountain pine beetle (Dendroctonus ponderosae), and dwarf mistletoe (Arceuthobium cyanocarpum) in a changing climate. With the continued spread of WPBR, extensive mortality will continue with strong selection...

  9. A complexity analysis of functional interpretations

    DEFF Research Database (Denmark)

    Hernest, Mircea-Dan; Kohlenbach, Ulrich

    2005-01-01

    Summary: We give a quantitative analysis of Gödel's functional     interpretation and its monotone variant. The two have been used     for the extraction of programs and numerical bounds as well as     for conservation results. They apply both to (semi-)intuitionistic     as well as (combined...... with negative translation) classical proofs.     The proofs may be formalized in systems ranging from weak base     systems to arithmetic and analysis (and numerous fragments of     these). We give upper bounds in basic proof data on the depth,     size, maximal type degree and maximal type arity...... of the extracted     terms as well as on the depth of the verifying proof. In all     cases terms of size linear in the size of the proof at input     can be extracted and the corresponding extraction algorithms     have cubic worst-time complexity. The verifying proofs have depth     linear in the depth...

  10. Restoration planting options for limber pines impacted by mountain pine beetles and/or white pine blister rust in the Southern Rocky Mountains

    Science.gov (United States)

    Anne Marie Casper; William R. Jacobi; Anna W. Schoettle; Kelly S. Burns

    2010-01-01

    Limber Pine (Pinus flexilis) populations in the southern Rock Mountains are severely threatened by the combined impacts of mountain pine beetles and white pine blister rust. Limber pine’s critical role these high elevation ecosystems heightens the importance of mitigating impacts. To develop forest-scale planting methods six seedling planting trial sites were installed...

  11. Potential for long-term seed storage for ex situ genetic conservation of high elevation white pine species – whitebark pine and foxtail pine case study

    Science.gov (United States)

    R.A. Sniezko; A.J. Kegley

    2017-01-01

    Whitebark pine (Pinus albicaulis) and foxtail pine (P. balfouriana) are conifers native to western North America. Due to several threats, including a non-native pathogen (Cronartium ribicola) and a changing climate, whitebark pine and foxtail pine are classified on the IUCN Red List as ‘endangered’ and ‘...

  12. Ant distribution in relation to ground water in north Florida pine flatwoods.

    Science.gov (United States)

    Tschinkel, Walter R; Murdock, Tyler; King, Joshua R; Kwapich, Christina

    2012-01-01

    Longleaf pine savannas are one of the most threatened ecosystems in the world, yet are understudied. Ants are a functionally important and diverse group of insects in these ecosystems. It is largely unknown how local patterns of species diversity and composition are determined through the interaction of this dominant animal group with abiotic features of longleaf pine ecosystems. Here we describe how an important abiotic variable, depth to water table, relates to ant species distributions at local scales. Pitfall trapping studies across habitat gradients in the Florida coastal plains longleaf pine flatwoods showed that the ant community changed with mild differences in habitat. In this undulating landscape, elevation differences were less than 2 m, and the depth to the water table ranged from plant species composing the ground cover were zoned in response to depth to water, and shading by canopy trees increased over deeper water tables. Of the 27 ant species that were analyzed, depending on the statistical test, seven or eight were significantly more abundant over a deep water table, eight to ten over a shallow one, and nine to eleven were not significantly patterned with respect to depth to water. Ant species preferring sites with shallow groundwater also preferred the shadier parts of the sites, while those preferring sites with deeper groundwater preferred the sunnier parts of the sites. This suggests that one group of species prefers hot-dry conditions, and the other cooler-moist. Factor analysis and abundance-weighted mean site characteristics generally confirmed these results. These results show that ant communities in this region respond to subtle differences in habitat, but whether these differences arise from founding preferences, survival, competition, or some combination of these is not known.

  13. Siberian Pine Decline and Mortality in Southern Siberian Mountains

    Science.gov (United States)

    Kharuk, V. I.; Im, S. T.; Oskorbin, P. A.; Petrov, I. A.; Ranson, K. J.

    2013-01-01

    The causes and resulting spatial patterns of Siberian pine mortality in eastern Kuznetzky Alatau Mountains, Siberia were analyzed based on satellite (Landsat, MODIS) and dendrochronology data. Climate variables studied included temperature, precipitation and Standardized Precipitation-Evapotranspiration Index (SPEI) drought index. Landsat data analysis showed that stand mortality was first detected in the year 2006 at an elevation of 650 m, and extended up to 900 m by the year 2012. Mortality was accompanied by a decrease in MODIS derived vegetation index (EVI).. The area of dead stands and the upper mortality line were correlated with increased drought. The uphill margin of mortality was limited by elevational precipitation gradients. Dead stands (i.e., >75% tree mortality) were located mainly on southern slopes. With respect to slope, mortality was observed within a 7 deg - 20 deg range with greatest mortality occurring on convex terrain. Tree radial incrementmeasurements correlate and were synchronous with SPEI (r sq = 0.37, r(sub s) = 80). Increasing synchrony between tree ring growth and SPEI indicates that drought has reduced the ecological niche of Siberian pine. The results also showed the primary role of drought stress on Siberian pine mortality. A secondary role may be played by bark beetles and root fungi attacks. The observed Siberian pine mortality is part of a broader phenomenon of "dark needle conifers" (DNC, i.e., Siberian pine, fir and spruce) decline and mortality in European Russia, Siberia, and the Russian Far East. All locations of DNC decline coincided with areas of observed drought increase. The results obtained are one of the first observations of drought-induced decline and mortality of DNC at the southern border of boreal forests. Meanwhile if model projections of increased aridity are correct DNC, within the southern part of its range may be replaced by drought-resistant Pinus silvestris and Larix sibirica.

  14. Analysis on Taxation Model of Pine Nut, Squirrel and Saplings%一类松籽、松鼠、幼苗的征税模型分析

    Institute of Scientific and Technical Information of China (English)

    郑洪艳; 罗勇; 胡亦郑

    2014-01-01

    运用微分方程理论,研究了一类非线性的红松种群征税模型,得到了该系统的平衡点,证明了该系统正平衡点的局部渐进稳定性和正平衡点的全局吸引域,利用 Pontryagin 最大值原理给出了最优征税策略。%This paper studies a class of nonlinear taxation model of pine nut, squirrel and saplings by means of the theory of differential equations. The existence of the positive equilibrium of the system is discussed through the research. Locally asymptotic stability of the system’s positive equilibrium is proved and the attractive domain of the positive equilibrium is obtained. The problem of optimal taxation strategy is settled by taking the advantage of Pontryagin’s maximal principle.

  15. Functional analysis of variance for association studies.

    Directory of Open Access Journals (Sweden)

    Olga A Vsevolozhskaya

    Full Text Available While progress has been made in identifying common genetic variants associated with human diseases, for most of common complex diseases, the identified genetic variants only account for a small proportion of heritability. Challenges remain in finding additional unknown genetic variants predisposing to complex diseases. With the advance in next-generation sequencing technologies, sequencing studies have become commonplace in genetic research. The ongoing exome-sequencing and whole-genome-sequencing studies generate a massive amount of sequencing variants and allow researchers to comprehensively investigate their role in human diseases. The discovery of new disease-associated variants can be enhanced by utilizing powerful and computationally efficient statistical methods. In this paper, we propose a functional analysis of variance (FANOVA method for testing an association of sequence variants in a genomic region with a qualitative trait. The FANOVA has a number of advantages: (1 it tests for a joint effect of gene variants, including both common and rare; (2 it fully utilizes linkage disequilibrium and genetic position information; and (3 allows for either protective or risk-increasing causal variants. Through simulations, we show that FANOVA outperform two popularly used methods - SKAT and a previously proposed method based on functional linear models (FLM, - especially if a sample size of a study is small and/or sequence variants have low to moderate effects. We conduct an empirical study by applying three methods (FANOVA, SKAT and FLM to sequencing data from Dallas Heart Study. While SKAT and FLM respectively detected ANGPTL 4 and ANGPTL 3 associated with obesity, FANOVA was able to identify both genes associated with obesity.

  16. How resilient are southwestern ponderosa pine forests after crown fires?

    OpenAIRE

    Savage, Van M.; Mast, J N

    2005-01-01

    The exclusion of low-severity surface fire from ponderosa pine (Pinus ponderosa P. & C. Lawson) forests of the Southwest has changed ecosystem structure and function such that severe crown fires are increasingly causing extensive stand mortality. This altered fire regime has resulted from the intersection of natural drought cycles with human activities that have suppressed natural fires for over a century. What is the trajectory of forest recovery after such fires? This study explores the reg...

  17. Tall oil precursors in three western pines: ponderosa, lodgepole, and limber pine

    Energy Technology Data Exchange (ETDEWEB)

    Conner, A.H.; Diehl, M.A.; Rowe, J.W.

    1980-01-01

    The nonvolatile diethyl ether extracts (NVEE) from ponderosa, lodgepole, and limber pines were analyzed to determine the amounts and chemical composition of the tall oil precursors (resin acids, fatty acids, and nonsaponifiables) and turpentine precursors available from these species. The results showed that crude tall oil compositions would be approximately as follows (% resin acids, % fatty acids, % nonsaponifiables); ponderosa pine - sapwood (15, 75, 10), heartwood (78, 7, 15); lodgepole pine - sapwood (24, 57, 19), heartwood (51, 26, 23); limber pine - sapwood (10, 82, 8), heartwood (23, 60, 17). The larger nonsaponifiables content, as compared to southern pines, is the major factor in explaining the greater difficulty in the distillative refining of tall oil from these western species. Eight resin acids were found in ponderosa and lodgepole pine: palustric, isopimaric, abietic, dehydroabietic, and neoabietic acids predominated. Seven resin acids were identified from limber pine: anticopalic, isopimaric, abietic, and dehydroabietic acids predominated. The free and esterfied fatty acids from these species contained predominantly oleic and linoleic acids. In addition limber pine contained major amounts of 5, 9, 12-octadecatrienoic acid. The nonsaponifiables contained mostly diterpenes and the sterols, sitosterol and campesterol. The major turpentine components were: ponderosa pine - ..beta..-pinene and 3-carene; lodgepole pine - ..beta..-phellandrene; and limber pine - 3-carene, ..beta..-phellandrene, ..cap alpha..-piene, and ..beta..-pinene.

  18. Introducing trimming and function ranking to Solid Works based on function analysis

    NARCIS (Netherlands)

    Chechurin, Leonid S.; Wits, Wessel W.; Bakker, Hans M.; Vaneker, Tom H.J.; Cascini, G.; Vaneker, T.H.J.

    2011-01-01

    TRIZ based Function Analysis models existing products based on functional interactions between product parts. Such a function model description is the ideal starting point for product innovation. Design engineers can apply (TRIZ) methods such as trimming and function ranking to this function model t

  19. Introducing Trimming and Function Ranking to SolidWorks based on Function Analysis

    NARCIS (Netherlands)

    Chechurin, L.S.; Wits, W.W.; Bakker, H.M.; Vaneker, T.H.J.

    2015-01-01

    TRIZ based Function Analysis models existing products based on functional interactions between product parts. Such a function model description is the ideal starting point for product innovation. Design engineers can apply (TRIZ) methods such as trimming and function ranking to this function model t

  20. Introducing Trimming and Function Ranking to SolidWorks based on Function Analysis

    NARCIS (Netherlands)

    Chechurin, L.S.; Wits, Wessel Willems; Bakker, Hans M.; Vaneker, Thomas H.J.

    2015-01-01

    TRIZ based Function Analysis models existing products based on functional interactions between product parts. Such a function model description is the ideal starting point for product innovation. Design engineers can apply (TRIZ) methods such as trimming and function ranking to this function model

  1. In vivo and in vitro mixed-function oxygenase activity and vitellogenin induction in fish and in fish and rat liver cells by stilbenes isolated from scotch pine (Pinus sylvestris).

    Science.gov (United States)

    Parrott, Joanne L; Kohli, Jagmohan; Sherry, James P; Hewitt, L Mark

    2011-01-01

    Many types of pulp and paper mill effluents have the ability to induce mixed-function oxygenase (MFO) activity and vitellogenin (VTG) protein in exposed male fish. The search for the compounds responsible for MFO induction has led to several classes of compounds, among them retene and stilbenes. The objective of this study was to investigate the biological activities of candidate stilbene compounds. Three stilbenes, 3,5-dihydroxystilbene (pinosylvin; P1), 3-hydroxy-5-methoxystilbene (P2), and 3,5-dimethoxystilbene (P3), were extracted from Scotch pine (Pinus sylvestris) and purified to evaluate their ability to induce MFO activity in vitro using ethoxyresorufin-O-deethylase (EROD) activity in a rat hepatoma cell line (H4IIE). As these compounds may be chlorinated during pulp bleaching, chlorination of P2 was undertaken, producing di- and trichlorinated isomers (Cl-P2), which were also tested. Compounds were tested for EROD-inducing ability in vivo by exposing juvenile rainbow tout (Oncorhynchus mykiss) to waterborne concentrations (0.010 to 1.0 mg/L) for 4 days. Compounds were also tested for their ability to induce VTG in trout primary liver cells in vitro. The stilbenes were weak inducers of EROD and VTG. H4IIE EROD was induced by all four compounds, with the most potent induction by P3, followed by P1, the Cl-P2 mixture, and then P2. Induction for all four stilbenes was from 3.13 × 10⁻³ to 3.57 × 10⁻⁴ as potent as retene and about 1.11 × 10⁻⁵ to 1.20 × 10⁻⁶ as potent as TCDD. Juvenile rainbow trout did not show EROD induction after exposures to P1, P2, or the Cl-P2 mixture, whereas P3 caused activity fourfold above that of controls. P1, P3, and Cl-P2 all weakly induced VTG in rainbow trout hepatocytes. The most potent inducer of VTG was Cl-P2, followed by P3 and P1. The results show the ability of wood-derived stilbenes to cause weak MFO induction in fish and in rat liver cells and to weakly induce vitellogenin in fish liver cells.

  2. Analysis of Discrete Mittag - Leffler Functions

    Directory of Open Access Journals (Sweden)

    N. Shobanadevi

    2015-03-01

    Full Text Available Discrete Mittag - Leffler functions play a major role in the development of the theory of discrete fractional calculus. In the present article, we analyze qualitative properties of discrete Mittag - Leffler functions and establish sufficient conditions for convergence, oscillation and summability of the infinite series associated with discrete Mittag - Leffler functions.

  3. Interfacial Properties of Loblolly Pine Bonded with Epoxy/Wood Pyrolysis Bio-oil Blended System

    Directory of Open Access Journals (Sweden)

    Yi Liu

    2014-12-01

    Full Text Available The bonding interface of loblolly pine veneers cured with epoxy/wood pyrolysis bio-oil resins was studied. The shear strength of the adhered strands was calculated to examine the effect of bio-oil addition on epoxy resin performance. The chemical structure, curing behavior, and microstructure were investigated to analyze the interaction between wood substrate and resins. Results showed that the strength of pine wood-resin joints gradually decreased as more bio-oil was added. However, this effect was not apparent when the substitution rate was lower than 30%. ATR-FTIR analysis confirmed that complex chemical reactions take place between wood constituents and epoxy/bio-oil resins involved in the cross-linking at the interface. The reaction degree of -OH and C-O-C functional groups plays a key role in regulating the bonding stress of the wood bond line. The addition of bio-oil accelerated the polycondensation cross-linking process, resulting in a decreased cure temperature. SEM and optical microscopy showed that the epoxy/bio-oil resin formed gel nails in the pit and tracheid gaps, leading to the closing of the capillaries of the wood’s cell walls and the colloidal interface extending into the timber micro-capillary system.

  4. Crystal structure of Korean pine (Pinus koraiensis) 7S seed storage protein with copper ligands.

    Science.gov (United States)

    Jin, Tengchuan; Wang, Yang; Chen, Yu-Wei; Fu, Tong-Jen; Kothary, Mahendra H; McHugh, Tara H; Zhang, Yuzhu

    2014-01-08

    The prevalence of food allergy has increased in recent years, and Korean pine vicilin is a potential food allergen. We have previously reported the crystallization of Korean pine vicilin purified from raw pine nut. Here we report the isolation of vicilin mRNA and the crystal structure of Korean pine vicilin at 2.40 Å resolution. The overall structure of pine nut vicilin is similar to the structures of other 7S seed storage proteins and consists of an N-terminal domain and a C-terminal domain. Each assumes a cupin fold, and they are symmetrically related about a pseudodyad axis. Three vicilin molecules form a doughnut-shaped trimer through head-to-tail association. Structure characterization of Korean pine nut vicilin unexpectedly showed that, in its native trimeric state, the vicilin has three copper ligands. Sequence alignments suggested that the copper-coordinating residues were conserved in winter squash, sesame, tomato, and several tree nuts, while they were not conserved in a number of legumes, including peanut and soybean. Additional studies are needed to assess whether the copper-coordinating property of vicilins has a biological function in the relevant plants. The nutritional value of this copper-coordinating protein in tree nuts and other edible seeds may be worth further investigations.

  5. Diprionidae sawflies on lodgepole and ponderosa pines

    Science.gov (United States)

    Eight species of Diprionidae feed on lodgepole pine (Pinus contorta) and ponderosa pine (P. ponderosa) in western United States: Neodiprion burkei Middleton, N. annulus contortae Ross, N. autumnalis Smith, N. fulviceps (Cresson), N. gillettei (Rohwer), N. mundus Rohwer, N. ventralis Ross, and Zadi...

  6. Developing blister rust resistance in white pines

    Science.gov (United States)

    Bohun B. Kinloch Jr.

    2000-01-01

    After a century since introduction to North America from Europe, white pine blister rust, caused by Cronartium ribicola J.C. Fisch., is recognized as one of the catastrophic plant disease epidemics in history. It has not yet stabilized and continues to spread and intensify. Its nine native white pine hosts comprise major timber producers, important...

  7. Pine nuts: the mycobiota and potential mycotoxins.

    Science.gov (United States)

    Weidenbörner, M

    2001-05-01

    The mycobiota of pine nuts was investigated. In total, 1832 fungi belonging to 31 species and 15 genera (Ascomycota, 2; Zygomycota, 3; mitosporic fungi, 10) could be isolated. Cladosporium spp. dominated the mycobiota with 685 isolations followed by Phoma macrostoma with 351 isolations. Overall, 16 potentially mycotoxigenic species were present on pine nuts.

  8. A boundary value problem for hypermonogenic functions in Clifford analysis

    Institute of Scientific and Technical Information of China (English)

    QIAO; Yuying

    2005-01-01

    This paper deals with a boundary value problem for hypermonogenic functions in Clifford analysis. Firstly we discuss integrals of quasi-Cauchy's type and get the Plemelj formula for hypermonogenic functions in Clifford analysis, and then we address Riemman boundary value problem for hypermonogenic functions.

  9. GC- MS analysis of volatile oil from the pine needles of Pinus densiflora and Pinus sylvestris var.sylvtriforms%赤松与长白赤松松针挥发油成分的GC-MS分析

    Institute of Scientific and Technical Information of China (English)

    滕坤; 张海丰; 徐敏; 朱俊义

    2011-01-01

    Objective;To analyze volatile oil from the pine needles of Pinus densiflora Sieb. Et Zucc. And Pinus syl-vestris L. Var. Sylvtriforms Cheng et C. D. Chu by GC - MS. Methods; The volatile oil was extracted by steam distillation from the pine needles of P. Densiflora and P. Sylvestris var. Sylvtriforms, respectively, and analyzed by gas chromatography - mass spectrometry( GC - MS) technology, injector temperature was 230 ℃. The GC - MS analysis with a HP -5 fused silica capillary column(0. 25 mm ×30 m,0. 25 μm). Flow rate was 1 mL · Min-1. The split ratio was 40: 1. The injection volume was 0. 5 μL. The temperature programming was begun at 50 ℃, then programmed from 50 to 120 ℃ at 5 ℃ · Min-1 ,then programmed from 120 to 180 ℃ at 8 ℃ · Min-1 and finally,programmed from 180 to 200 ℃ at 5 ℃ · Min-1. Mass spectrometer conditions were;ionization mode,El; electron energy 70 eV; interface temperature 280 °C; ion source temperature 230℃. The mass selective detector was operated in the TIC mode,mass scan range,20 -500 amu. Results; From volatile oil of the pine needles of P. Densiflora, 36 compounds were separated,30 of them were identified; These 30 compounds amounted totally to about 98. 37% of the total peak area; The major components in the volatile oil were β - phellandrene (20. 96% ) , α - pinene (16. 081 % ) , camphene ( 11. 529 % ) , and santolina triene ( 16. 471 % ). From volatile oil of the pine needles of P. Sylvestris var. Sylvtriforms, 34 compounds were separated, 31 of them were identified; These 31 compounds amounted totally to about 99. 24% of the total peak area; The major components of the volatile oil were 1 -R-α- pinene (17. 592% ) ,caryophyllene( 15. 398% ) ,β - phellandrene ( 14. 813% ),[ S -(E,E)]- 1 - methyl - 5 - methyl-ene - 8 - ( 1 - methylethyl) -1,6- cyclodecadiene ( 7. 573% ) ,β - pinene ( 5. 929% ) , 1 - methyl - 4 - ( 1 -methylethylidene) - cyclohexene (4. 663% ). Conclusions: Components of volatile oil of the

  10. Modelling the productivity of Anatolian black pine plantations in Turkey

    Directory of Open Access Journals (Sweden)

    Şükrü Teoman Güner

    2016-01-01

    Full Text Available This study was carried out to determine the relationships between height growth (site index of Anatolian black pine (Pinus nigra Arnold. subsp. pallasina (Lamb. Holmboe and site factors of the plantation areas in Turkey. Data were collected from 118 sample plots by taking into consideration the variations of aspect, altitude, slope position, slope degree and site class. A representative tree for the productivity and soil samples were taken at each sample plot. Some chemical and physical properties of soil samples were determined in the laboratory. The relationships between site index values of the trees and site factors including parent material, soil, climate and topography were examined by using correlation, stepwise regression and regression tree analysis. Significant linear relations were found between site index of black pine and site factors being altitude, slope degree, slope position, annual rainfall, precipitation amount in the most drought month, solum depth and bedrock including granite, mica schist and dacite. Explanation variance percentage on the site index of black pine was found 54.4% by using regression tree analysis whereas explained variance become 34.7% by stepwise regression analysis.

  11. Purification and characterization of the 7S vicilin from Korean pine (Pinus koraiensis).

    Science.gov (United States)

    Jin, Tengchuan; Albillos, Silvia M; Chen, Yu-Wei; Kothary, Mahendra H; Fu, Tong-Jen; Zhang, Yu-Zhu

    2008-09-10

    Pine nuts are economically important as a source of human food. They are also of medical importance because numerous pine nut allergy cases have been recently reported. However, little is known about the proteins in pine nuts. The purpose of this study was to purify and characterize pine nut storage proteins. Reported here is the first detailed purification protocol of the 7S vicilin-type globulin from Korean pine (Pinus koraiensis) by gel filtration, anion exchange, and hydrophobic interaction chromatography. Reducing SDS-PAGE analysis indicated that purified vicilin consists of four major bands, reminiscent of post-translational protease cleavage of storage proteins during protein body packing in other species. The N-terminal ends of vicilin peptides were sequenced by Edman degradation. Circular dichroism (CD) and differential scanning calorimetry (DSC) analyses revealed that pine nut vicilin is stable up to 80 degrees C and its folding-unfolding equilibrium monitored by intrinsic fluorescence can be interpreted in terms of a two-state model.

  12. An investigational report into the causes of pine mouth events in US consumers.

    Science.gov (United States)

    Kwegyir-Afful, Ernest E; Dejager, Lowri S; Handy, Sara M; Wong, Jon; Begley, Timothy H; Luccioli, Stefano

    2013-10-01

    Between July 2008 and June 2012, the US Food and Drug Administration received 501 consumer reports of prolonged taste disturbances consistent with pine mouth syndrome. Consumers consistently reported a delayed bitter or metallic taste beginning hours to days following consumption of pine nuts that recurred with intake of any food or meal. This dysgeusia lasted in some cases up to a few weeks, but would eventually resolve without serious health consequences. To evaluate these reports, a questionnaire was developed to address various characteristics of the pine nuts consumed, pertinent medical history of complainants and other dysgeusia-related factors. Pine nut samples associated with 15 complaints were collected for analysis. The investigation of reports found no clear evidence of an underlying medical cause or common trigger that could adequately explain the occurrence of dysgeusia in complainants. Rather, the results of our investigation suggest that the occurrence of "pine mouth syndrome" in US consumers is correlated with the consumption of the pine nut species Pinus armandii.

  13. White pine blister rust resistance research in Minnesota and Wisconsin

    Science.gov (United States)

    Andrew David; Paul Berrang; Carrie Pike

    2012-01-01

    The exotic fungus Cronartium ribicola causes the disease white pine blister rust on five-needled pines throughout North America. Although the effects of this disease are perhaps better known on pines in the western portion of the continent, the disease has also impacted regeneration and growth of eastern white pine (Pinus strobus L. ...

  14. White pine blister rust in the interior Mountain West

    Science.gov (United States)

    Kelly Burns; Jim Blodgett; Dave Conklin; Brian Geils; Jim Hoffman; Marcus Jackson; William Jacobi; Holly Kearns; Anna Schoettle

    2010-01-01

    White pine blister rust is an exotic, invasive disease of white, stone, and foxtail pines (also referred to as white pines or five-needle pines) in the genus Pinus and subgenus Strobus (Price and others 1998). Cronartium ribicola, the fungus that causes WPBR, requires an alternate host - currants and gooseberries in the genus Ribes and species of Pedicularis...

  15. Pine nut allergy: clinical features and major allergens characterization

    Science.gov (United States)

    Pine nuts, the seeds of pine trees, are widely used for human consumption in Europe, America, and Asia. The aims of this study were to evaluate IgE-mediated hypersensitivity to pine nut in a large number of patients with details of clinical reactions, and to characterize major pine nut allergens. Th...

  16. Anaphylaxis induced by pine nuts in two young girls.

    Science.gov (United States)

    Ibáñez, M Dolores; Lombardero, Manuel; San Ireneo, Mercedes Martinez; Muñoz, M Carmen

    2003-08-01

    Pine nuts are the seeds of Pinus pinea. There are few reported cases of allergy to pine nut. We describe two young girls with anaphylaxis caused by small amounts of pine nuts. Specific IgE to pine nut was demonstrated by skin prick tests and RAST but no IgE to other nuts and pine pollen was detected. The patients had IgE against a pine nut protein band with apparent molecular weights of approximately 17 kDa that could be considered as the main allergen. Our patients were monosensitized to pine nut and the 17-kDa protein could be correlated with the severe clinical symptoms.

  17. Scientific designs of pine seeds and pine cones for species conservation

    Science.gov (United States)

    Song, Kahye; Yeom, Eunseop; Kim, Hyejeong; Lee, Sang Joon

    2015-11-01

    Reproduction and propagation of species are the most important missions of every living organism. For effective species propagation, pine cones fold their scales under wet condition to prevent seeds from short-distance dispersal. They open and release their embedded seeds on dry and windy days. In this study, the micro-/macro-scale structural characteristics of pine cones and pine seeds are studied using various imaging modalities. Since the scales of pine cones consist of dead cells, the folding motion is deeply related to structural changes. The scales of pine cones consist of three layers. Among them, bract scales are only involved in collecting water. This makes pine cones reduce the amount of water and minimize the time spent on structural changes. These systems also involve in drying and recovery of pine cones. In addition, pine cones and pine seeds have advantageous structures for long-distance dispersal and response to natural disaster. Owing to these structural features, pine seeds can be released safely and efficiently, and these types of structural advantages could be mimicked for practical applications. This research was financially supported by the Creative Research Initiative of the Ministry of Science, ICT and Future Planning (MSIP) and the National Research Foundation (NRF) of Korea (Contract grant number: 2008-0061991).

  18. Effect of damaged pine needles on growth and development of pine caterpillar larvae

    Institute of Scientific and Technical Information of China (English)

    ZHANG Lili; LI Zhenyu; LI Hailin; HAN Ruidong; ZHAO Yongli

    2006-01-01

    Chinese pine caterpillar (Dendrolimus tabulaeformis)larvae were fed with pine needles of different degrees of damage to evaluate the effects of pine needles on the growth and development of larvae.The results showed that the nutritional index of the larvae declines after feeding on the damaged pine needlings.The lowest amount of food ingested and voided feces,the lowest nutritional index,slowest development,lightest pupae and most mortality were found in those pine caterpillar larvae fed with pine needles which were 50% damaged.The damaged pine needles significantly affected the population dynamics of Chinese pine caterpillars.The nutritional indices of larvae fed with 25% and 75% damaged pine needles were similar.The nutritional index of the dark morphs was higher than that of the tinted morphs,however,their mortality was lower than that of the tinted morphs.This phenomenon was reversed at the later stage of development when the larvae were fed on 50% damaged pine needles.

  19. New Mathematical Functions for Vacuum System Analysis

    Science.gov (United States)

    Woronowicz, Michael S.

    2017-01-01

    A new bivariate function has been found that provides solutions of integrals having the form u (sup minus eta) e (sup u) du which arise when developing predictions for the behavior of pressure within a rigid volume under high vacuum conditions in the presence of venting as well as sources characterized by power law transient decay over the range [0,1] for eta and for u greater than or equal to 0. A few properties of the new function are explored in this work. For instance the eta equals 1/2 case reproduces the Dawson function. In addition, a slight variation of the solution technique reproduces the exponential integral for eta equals 1. The technique used to generate these functions leads to an approach for solving a more general class of nonlinear ordinary differential equations, with the potential for identifying other new functions that solve other integrals.

  20. Gain-of-Function Research: Ethical Analysis.

    Science.gov (United States)

    Selgelid, Michael J

    2016-08-01

    Gain-of-function (GOF) research involves experimentation that aims or is expected to (and/or, perhaps, actually does) increase the transmissibility and/or virulence of pathogens. Such research, when conducted by responsible scientists, usually aims to improve understanding of disease causing agents, their interaction with human hosts, and/or their potential to cause pandemics. The ultimate objective of such research is to better inform public health and preparedness efforts and/or development of medical countermeasures. Despite these important potential benefits, GOF research (GOFR) can pose risks regarding biosecurity and biosafety. In 2014 the administration of US President Barack Obama called for a "pause" on funding (and relevant research with existing US Government funding) of GOF experiments involving influenza, SARS, and MERS viruses in particular. With announcement of this pause, the US Government launched a "deliberative process" regarding risks and benefits of GOFR to inform future funding decisions-and the US National Science Advisory Board for Biosecurity (NSABB) was tasked with making recommendations to the US Government on this matter. As part of this deliberative process the National Institutes of Health commissioned this Ethical Analysis White Paper, requesting that it provide (1) review and summary of ethical literature on GOFR, (2) identification and analysis of existing ethical and decision-making frameworks relevant to (i) the evaluation of risks and benefits of GOFR, (ii) decision-making about the conduct of GOF studies, and (iii) the development of US policy regarding GOFR (especially with respect to funding of GOFR), and (3) development of an ethical and decision-making framework that may be considered by NSABB when analyzing information provided by GOFR risk-benefit assessment, and when crafting its final recommendations (especially regarding policy decisions about funding of GOFR in particular). The ethical and decision-making framework

  1. Hybridization Leads to Loss of Genetic Integrity in Shortleaf Pine: Unexpected Consequences of Pine Management and Fire Suppression

    Science.gov (United States)

    Charles G. Tauer; John F. Stewart; Rodney E. Will; Curtis J. Lilly; James M. Guldin; C. Dana Nelson

    2012-01-01

    Hybridization between shortleaf pine and loblolly pine is causing loss of genetic integrity (the tendency of a population to maintain its genotypes over generations) in shortleaf pine, a species already exhibiting dramatic declines due to land-use changes. Recent findings indicate hybridization has increased in shortleaf pine stands from 3% during the 1950s to 45% for...

  2. Hybridization in naturally regenerated shortleaf pine as affected by the distance to nearby artificially regenerated stands of loblolly pine

    Science.gov (United States)

    John F. Stewart; Charles G. Tauer; James M. Guldin; C. Dana Nelson

    2013-01-01

    The natural range of shortleaf pine encompasses 22 states from New York to Texas, second only to eastern white pine in the eastern United States. It is a species of minor and varying occurrence in most of these states usually found in association with other pines, but it is the only naturally occurring pine in the northwestern part of its range in Oklahoma, Arkansas,...

  3. Descriptive Topology in Selected Topics of Functional Analysis

    CERN Document Server

    Kakol, J; Pellicer, Manuel Lopez

    2011-01-01

    "Descriptive Topology in Selected Topics of Functional Analysis" is a collection of recent developments in the field of descriptive topology, specifically focused on the classes of infinite-dimensional topological vector spaces that appear in functional analysis. Such spaces include Frechet spaces, (LF)-spaces and their duals, and the space of continuous real-valued functions C(X) on a completely regular Hausdorff space X, to name a few. These vector spaces appear in functional analysis in distribution theory, differential equations, complex analysis, and various other analytical set

  4. Analysis of affinely equivalent Boolean functions

    Institute of Scientific and Technical Information of China (English)

    MENG QingShu; ZHANG HuanGuo; YANG Min; WANG ZhangYi

    2007-01-01

    By some basic transforms and invariant theory, we give two results: 1) an algorithm,which can be used to judge if two Boolean functions are affinely equivalent and to obtain the equivalence relationship if they are equivalent. This is useful in studying Boolean functions and in engineering. For example, we classify all 8-variable homogeneous bent functions of degree 3 into two classes; 2) Reed-Muller codes R(4,6)/R(1,6), R(3,7)/R(1,7) are classified efficiently.

  5. Shape Analysis Using the Auto Diffusion Function

    DEFF Research Database (Denmark)

    Gebal, Katarzyna; Bærentzen, Jakob Andreas; Aanæs, Henrik

    2009-01-01

    Scalar functions defined on manifold triangle meshes is a starting point for many geometry processing algorithms such as mesh parametrization, skeletonization, and segmentation. In this paper, we propose the Auto Diffusion Function (ADF) which is a linear combination of the eigenfunctions......, it is controlled by a single parameter which can be interpreted as feature scale, and, finally, the ADF is invariant to rigid and isometric deformations. We describe the ADF and its properties in detail and compare it to other choices of scalar functions on manifolds. As an example of an application, we present...

  6. Functional verification coverage measurement and analysis

    CERN Document Server

    Piziali, Andrew

    2007-01-01

    This book addresses a means of quantitatively assessing functional verification progress. Without this process, design and verification engineers, and management, are left guessing whether or not they have completed verifying the device they are designing.

  7. An analysis of functional antagonism and synergism.

    OpenAIRE

    Mackay, D.

    1981-01-01

    1 A method is described for deriving null equations for functional antagonism and synergism. These null equations relate together the concentrations of agonist required to produce equivalent states of a cell or tissue in the presence and in the absence of a functional interactant. 2 In one particular case the null equation leads to conclusions which are very similar to those reached by an earlier author who did not use the null method. However, the null equations give a clearer insight into t...

  8. Safety analysis of autonomous excavator functionality

    Energy Technology Data Exchange (ETDEWEB)

    Seward, D.; Pace, C.; Morrey, R.; Sommerville, I

    2000-10-01

    This paper presents an account of carrying out a hazard analysis to define the safety requirements for an autonomous robotic excavator. The work is also relevant to the growing generic class of heavy automated mobile machinery. An overview of the excavator design is provided and the concept of a safety manager is introduced. The safety manager is an autonomous module responsible for all aspects of system operational safety, and is central to the control system's architecture. Each stage of the hazard analysis is described, i.e. system model creation, hazard definition and hazard analysis. Analysis at an early stage of the design process, and on a system that interfaces directly to an unstructured environment, exposes certain issues relevant to the application of current hazard analysis methods. The approach taken in the analysis is described. Finally, it is explained how the results of the hazard analysis have influenced system design, in particular, safety manager specifications. Conclusions are then drawn about the applicability of hazard analysis of requirements in general, and suggestions are made as to how the approach can be taken further.

  9. Monoterpene emission from ponderosa pine

    Science.gov (United States)

    Lerdau, Manual; Dilts, Stephen B.; Westberg, Hal; Lamb, Brian K.; Allwine, Eugene J.

    1994-01-01

    We explore the variability in monoterpene emissions from ponderosa pine beyond that which can be explained by temperature alone. Specifically, we examine the roles that photosynthesis and needle monoterpene concentrations play in controlling emissions. We measure monoterpene concentrations and emissions, photosynthesis, temperature, and light availability in the late spring and late summer in a ponderosa pine forest in central Oregon. We use a combination of measurements from cuvettes and Teflon bag enclosures to show that photosynthesis is not correlated with emissions in the short term. We also show that needle monoterpene concentrations are highly correlated with emissions for two compounds, alpha-pinene and beta-pinene, but that Delta-carene concentrations are not correlated with emissions. We suggest that direct effects of light and photosynthesis do not need to be included in emission algorithms. Our results indicate that the role of needle concentration bears further investigation; our results for alpha-pinene and beta-pinene are explainable by a Raoult's law relationship, but we cannot yet explain the cause of our results with Delta-carene.

  10. Functional Analysis of P4-ATPases

    DEFF Research Database (Denmark)

    Theorin, Lisa

    and mammalian P4-ATPases have been studied extensively and the physiological function is mostly known, while the exact biochemistry and specific activity is mostly unknown. Even though the plant Arabidopsis thaliana has 12 P4-ATPases, not much is known about their function. In this study, the biochemical...... properties, with a focus on the lipid requirements, of the Aminophospholipid ATPase 2 (ALA2), a P4-ATPase from A. thaliana, were characterized. Heterologous expression of ALA2 together with its subunit, the Cdc50 homolog ALA Interacting Subunit 5 (ALIS5), in the yeast Saccharomyces cerevisiae allowed...... is specific for phosphatidylserine and that binding of the lipid to the substrate binding site requires a unique spatial configuration of the lipid head group. Detailed information on the substrate requirements lead the way towards the full function and transport pathway of lipid flippases in plants. Recent...

  11. A maritime pine antimicrobial peptide involved in ammonium nutrition.

    Science.gov (United States)

    Canales, Javier; Avila, Concepción; Cánovas, Francisco M

    2011-09-01

    A large family of small cysteine-rich antimicrobial peptides (AMPs) is involved in the innate defence of plants against pathogens. Recently, it has been shown that AMPs may also play important roles in plant growth and development. In previous work, we have identified a gene of the AMP β-barrelin family that was differentially regulated in the roots of maritime pine (Pinus pinaster Ait.) in response to changes in ammonium nutrition. Here, we present the molecular characterization of two AMP genes, PpAMP1 and PpAMP2, showing different molecular structure and physicochemical properties. PpAMP1 and PpAMP2 displayed different expression patterns in maritime pine seedlings and adult trees. Furthermore, our expression analyses indicate that PpAMP1 is the major form of AMP in the tree, and its relative abundance is regulated by ammonium availability. In contrast, PpAMP2 is expressed at much lower levels and it is not regulated by ammonium. To gain new insights into the function of PpAMP1, we over-expressed the recombinant protein in Escherichia coli and demonstrated that PpAMP1 strongly inhibited yeast growth, indicating that it exhibits antimicrobial activity. We have also found that PpAMP1 alters ammonium uptake, suggesting that it is involved in the regulation of ammonium ion flux into pine roots.

  12. Differentiation of Scots pine populations in the belt pine forests of Altai Krai discovered with markers of various nature

    Directory of Open Access Journals (Sweden)

    K. G. Zatsepina

    2016-10-01

    Full Text Available In the territory of steppe zone of Ob’-Irtysh interfluve it was studied the differentiation of scots pine populations of belt forests with use of allozyme’s, phene’s and morphometric markers. Here allocated 2 forest-seed zoning and border between them practically coincides with border between Siberian and Kulunda pine subspecies on L. F. Pravdin’s classification. Allozyme’s analysis didn’t reveal significant differentiation of stands, except for rare differences between some of them and a slight trend for decrease in effective number of alleles in the more southern populations. The analysis of a molecular variance (AMOVA also shows absence of differentiation of populations from different forest-seed zoning. Differentiation of populations by using phenes (coloring of seeds, type of cone’s apophysis and high-inherited morphometric characters (index form of cones and weight of 1000 seeds was more effective at comparing populations on both levels – between and within forest-seed zoning. It allowed revealing of reliable distinctions between populations in almost 82 % of cases of total number of the compared couples of populations, thus extent of differentiation using the allozyme’s markers is almost three times lower. The assessment of population structure of pine in tape forest of Altai region, which is carried out with application of a complex of markers, indicates between-populations heterogeneity in this part of area. The received results confirm the expediency of complex researches of population structure of forest-forming species and the necessity of more precise definition of forest-seed zoning of a scots pine in the studied territory.

  13. Asymptotic analysis for functional stochastic differential equations

    CERN Document Server

    Bao, Jianhai; Yuan, Chenggui

    2016-01-01

    This brief treats dynamical systems that involve delays and random disturbances. The study is motivated by a wide variety of systems in real life in which random noise has to be taken into consideration and the effect of delays cannot be ignored. Concentrating on such systems that are described by functional stochastic differential equations, this work focuses on the study of large time behavior, in particular, ergodicity. This brief is written for probabilists, applied mathematicians, engineers, and scientists who need to use delay systems and functional stochastic differential equations in their work. Selected topics from the brief can also be used in a graduate level topics course in probability and stochastic processes.

  14. Stability analysis of impulsive functional differential equations

    CERN Document Server

    Stamova, Ivanka

    2009-01-01

    This book is devoted to impulsive functional differential equations which are a natural generalization of impulsive ordinary differential equations (without delay) and of functional differential equations (without impulses). At the present time the qualitative theory of such equationsis under rapid development. After a presentation of the fundamental theory of existence, uniqueness and continuability of solutions, a systematic development of stability theory for that class of problems is given which makes the book unique. It addresses to a wide audience such as mathematicians, applied research

  15. Functional analysis of anomeric sugar kinases.

    Science.gov (United States)

    Conway, Louis P; Voglmeir, Josef

    2016-09-02

    Anomeric sugar kinases perform fundamental roles in the metabolism of carbohydrates. Under- or overexpression of these enzymes, or mutations causing functional impairments can give rise to diseases such as galactosaemia and so the study of this class of kinase is of critical importance. In addition, anomeric sugar kinases which are naturally promiscuous, or have been artificially made so, may find application in the synthesis of libraries of drug candidates (for example, antibiotics), and natural or unnatural oligosaccharides and glycoconjugates. In this review, we provide an overview of the biological functions of these enzymes, the tools which have been developed to investigate them, and the current frontiers in their study.

  16. [Partial lease squares approach to functional analysis].

    Science.gov (United States)

    Preda, C

    2006-01-01

    We extend the partial least squares (PLS) approach to functional data represented in our models by sample paths of stochastic process with continuous time. Due to the infinite dimension, when functional data are used as a predictor for linear regression and classification models, the estimation problem is an ill-posed one. In this context, PLS offers a simple and efficient alternative to the methods based on the principal components of the stochastic process. We compare the results given by the PLS approach and other linear models using several datasets from economy, industry and medical fields.

  17. Growth Analysis of Individual Tree Basal Area of Western Yellow Pine Introduced in Kostelec Region%KOSTELEC地区西黄松林木个体胸高断面积生长分析

    Institute of Scientific and Technical Information of China (English)

    廖超英; PODRAZSKY; Vilem

    2001-01-01

    Four theoretical growth functions,the Mitscherlich,Logistic,Gompertz and Korf functions were applied to the basal area growth data of individual Western Yellow Pine(Pinus ponderosa)trees to model the basal area growth.The current increment,mean increment and growth intensity of basal area as functions of age were given by derivation from the best fit growth function.The growth process of basalarea was divided into three periods by the two inflexion points of the current increment curve of basal area. The results indicated that the Korf function fitted the basal area growth best,followed by the Gompertz, Logistic and Mitscherlich functions.The maximum values of the current increment and the mean increment appeared at age 7 years and age 15 years respectively.The average growth intensity of basal area was 0.3243.During the rapid growth period(3 to 11 years) the average increment of basal area per year was 0.001 474 m2.%用Mitscherlich、Logistic、Gompertz和Korf 4个理论生长方程分别对引种到捷克Kostelec地区的西黄松林木个体胸高断面积生长过程进行了拟合,由最佳生长方程分别得出了胸高断面连年生长量、平均生长量和相对生长率随时间变化的函数,并对生长过程进行了分析.结果表明:Korf方程具有最高的拟合精度,能很好地描述西黄松胸高断面积生长过程;西黄松胸高断面积连年生长量和平均生长量最大值分别出现在第7 a和第15 a(胸高年龄);1~26 a的平均相对生长率为0.243;速生期(3~¨a)内胸高断面积平均生长量为0.001 474 m2.

  18. Systemic allergic reaction to pine nuts.

    Science.gov (United States)

    Nielsen, N H

    1990-02-01

    This case report describes a systemic reaction due to ingestion of pine nuts, confirmed by an open, oral provocation test. Skin prick testing with the aqueous allergen revealed an immediate positive prick test, and histamine release from basophil leukocytes to the aqueous allergen was demonstrated. Radioallergosorbent test demonstrated specific IgE antibodies to pine nuts. In a review of medical literature, we found no reports of either oral provocation tests confirming a systemic reaction due to ingestion of pine nuts or demonstration of specific IgE antibodies.

  19. [Pine mouth syndrome: a global problem].

    Science.gov (United States)

    Redal-Baigorri, Ana Belén

    2011-12-01

    Pinemouth syndrome is characterised by the development of metallogeusia two days after the ingestion of Chinese pine nuts. The symptoms disappear 7-14 days later. The distribution of Chinese pine nuts not suitable for human consumption, is caused by an increasing demand due to price differences. The reason for the taste disturbances is unknown, some suggest turpentine-based products in its composition, and others have studied the fatty acid content of pine nuts and the properties of pinolenic acid. So far the presence of pesticides or mycotoxins is been ruled out, but the puzzle remains unsolved.

  20. Analysis of radial basis function interpolation approach

    Institute of Scientific and Technical Information of China (English)

    Zou You-Long; Hu Fa-Long; Zhou Can-Can; Li Chao-Liu; Dunn Keh-Jim

    2013-01-01

    The radial basis function (RBF) interpolation approach proposed by Freedman is used to solve inverse problems encountered in well-logging and other petrophysical issues. The approach is to predict petrophysical properties in the laboratory on the basis of physical rock datasets, which include the formation factor, viscosity, permeability, and molecular composition. However, this approach does not consider the effect of spatial distribution of the calibration data on the interpolation result. This study proposes a new RBF interpolation approach based on the Freedman's RBF interpolation approach, by which the unit basis functions are uniformly populated in the space domain. The inverse results of the two approaches are comparatively analyzed by using our datasets. We determine that although the interpolation effects of the two approaches are equivalent, the new approach is more flexible and beneficial for reducing the number of basis functions when the database is large, resulting in simplification of the interpolation function expression. However, the predicted results of the central data are not sufficiently satisfied when the data clusters are far apart.

  1. Binocular Vision Function Analysis of 75 Subjects

    Institute of Scientific and Technical Information of China (English)

    Ya-ping Gao; Hai-ying Wang; Xiu-rong Tang; Ying Zhang; Xiao-tong Huo

    2004-01-01

    @@ We randomly chose 75 subjects; 34 men and 41 womenwith an average age of 21 years. Our study method included subject interviews, and evamuination of their refractive and binocular vision functions.We recorded, basic biographical data, medical history, family history, lifestyle factors that relate to their use of vision and history of wearing glasses.

  2. Differential analysis of matrix convex functions

    DEFF Research Database (Denmark)

    Hansen, Frank; Tomiyama, Jun

    2007-01-01

    We analyze matrix convex functions of a fixed order defined in a real interval by differential methods as opposed to the characterization in terms of divided differences given by Kraus [F. Kraus, Über konvekse Matrixfunktionen, Math. Z. 41 (1936) 18-42]. We obtain for each order conditions for ma...

  3. Density functional and neural network analysis

    DEFF Research Database (Denmark)

    Jalkanen, K. J.; Bohr, Henrik

    1997-01-01

    Density functional theory (DFT) calculations have been carried out for hydrated L-alanine, L-alanyl-L-alanine and N-acetyl L-alanine N'-methylamide and examined with respect to the effect of water on the structure, the vibrational frequencies, vibrational absorption (VA) and vibrational circular...

  4. Analysis of the Bogoliubov free energy functional

    DEFF Research Database (Denmark)

    Reuvers, Robin

    In this thesis, we analyse a variational reformulation of the Bogoliubov approximation that is used to describe weakly-interacting translationally-invariant Bose gases. For the resulting model, the `Bogoliubov free energy functional', we demonstrate existence of minimizers as well as the presence...

  5. Short communication. Tomography as a method to study umbrella pine (Pinus pinea) cones and nuts

    Energy Technology Data Exchange (ETDEWEB)

    Nunes, A.; Pereira, H.; Tomé, M.; Silva, J.; Fontes, L.

    2016-07-01

    Aim of the study: Umbrella or stone pine (Pinus pinea) nuts are one of the most valuable and expensive non-wood forest products in Portugal. The increasing market and landowner's interest resulted on a high expansion of plantation areas. This study tests the feasibility of using tomography to characterize pine cones and nuts. Area of study: The research was carried out in pine stand, with nine years, grafted in 2011, on Herdade of Machoqueira do Grou, near Coruche, in Portugal’s central area. Material and Methods: Starting in June 2015, ten pine cones in their final stage of development, were randomly monthly collected, and evaluated with tomography equipment commonly used in clinical medicine, according to Protocol Abdomen Mean. A sequence of images corresponding to 1mm-spaced cross-sections were obtained and reconstructed to produce a 3D model. The segmented images were worked using free image processing software, like RadiAnt Dicom Viewer, Data Viewer and Ctvox. Main results: The cone’s structures were clearly visible on the images, and it was possible to easily identify empty pine nuts. Although expensive, tomography is an easy and quick application technique that allows to assess the internal structures, through the contrast of materials densities, allowing to estimate pine nut’s size and empty nut’s proportion. By analysis of ninety images, it was obtained, an estimated mean value of 25.5 % empty nuts. Research highlights: Results showed the potential of tomography as a screening tool to be used in industry and research areas, for analysis and diagnostic of stone pine cone’s structures. (Author)

  6. Nuclear magnetic resonance spectroscopy and chemometrics to identify pine nuts that cause taste disturbance.

    Science.gov (United States)

    Kobler, Helmut; Monakhova, Yulia B; Kuballa, Thomas; Tschiersch, Christopher; Vancutsem, Jeroen; Thielert, Gerhard; Mohring, Arne; Lachenmeier, Dirk W

    2011-07-13

    Nontargeted 400 MHz (13)C and (1)H nuclear magnetic resonance (NMR) spectroscopy was used in the context of food surveillance to reveal Pinus species whose nuts cause taste disturbance following their consumption, the so-called pine nut syndrome (PNS). Using principal component analysis, three groups of pine nuts were distinguished. PNS-causing products were found in only one of the groups, which however also included some normal products. Sensory analysis was still required to confirm PNS, but NMR allowed the sorting of 53% of 57 samples, which belong to the two groups not containing PNS species. Furthermore, soft independent modeling of class analogy was able to classify the samples between the three groups. NMR spectroscopy was judged as suitable for the screening of pine nuts for PNS. This process may be advantageous as a means of importation control that will allow the identification of samples suitable for direct clearance and those that require further sensory analysis.

  7. "Pine mouth" syndrome: cacogeusia following ingestion of pine nuts (genus: pinus). An emerging problem?

    Science.gov (United States)

    Munk, Marc-David

    2010-06-01

    We report a case of cacogeusia, specifically metallogeusia (a perceived metallic or bitter taste) following pine nut ingestion. A 36-year-old male presented with cacogeusia one day following ingestion of 10-15 roasted pine nuts (genus: Pinus). Symptoms became worst on post-exposure day 2 and progressively improved without treatment over 5 days. There were no other symptoms and physical examination was unrevealing. All symptoms resolved without sequalae. We contemporaneously report a rise in pine nut-associated cacogeusia reported online during the first quarter of 2009, and a significant rise in online searches related to pine nut-associated cacogeusia (or what the online public has termed "pine mouth") during this time. Most online contributors note a similar cacogeusia 1-3 days following pine nut ingestion lasting for up to 2 weeks. All cases seem self-limited. Patients occasionally describe abdominal cramping and nausea after eating the nuts. Raw, cooked, and processed nuts (in pesto, for example) are implicated. While there appears to be an association between pine nut ingestion and cacogeusia, little is known about this condition, nor can any specific mechanism of specific cause be identified. It is not known if a specific species of pine nut can be implicated. "Pine mouth" appears to be an emerging problem.

  8. Landscape genetics for the empirical assessment of resistance surfaces: the European pine marten (Martes martes) as a target-species of a regional ecological network.

    Science.gov (United States)

    Ruiz-González, Aritz; Gurrutxaga, Mikel; Cushman, Samuel A; Madeira, María José; Randi, Ettore; Gómez-Moliner, Benjamin J

    2014-01-01

    Coherent ecological networks (EN) composed of core areas linked by ecological corridors are being developed worldwide with the goal of promoting landscape connectivity and biodiversity conservation. However, empirical assessment of the performance of EN designs is critical to evaluate the utility of these networks to mitigate effects of habitat loss and fragmentation. Landscape genetics provides a particularly valuable framework to address the question of functional connectivity by providing a direct means to investigate the effects of landscape structure on gene flow. The goals of this study are (1) to evaluate the landscape features that drive gene flow of an EN target species (European pine marten), and (2) evaluate the optimality of a regional EN design in providing connectivity for this species within the Basque Country (North Spain). Using partial Mantel tests in a reciprocal causal modeling framework we competed 59 alternative models, including isolation by distance and the regional EN. Our analysis indicated that the regional EN was among the most supported resistance models for the pine marten, but was not the best supported model. Gene flow of pine marten in northern Spain is facilitated by natural vegetation, and is resisted by anthropogenic landcover types and roads. Our results suggest that the regional EN design being implemented in the Basque Country will effectively facilitate gene flow of forest dwelling species at regional scale.

  9. Continuous nowhere differentiable functions the monsters of analysis

    CERN Document Server

    Jarnicki, Marek

    2015-01-01

    This book covers the construction, analysis, and theory of continuous nowhere differentiable functions, comprehensively and accessibly. After illuminating the significance of the subject through an overview of its history, the reader is introduced to the sophisticated toolkit of ideas and tricks used to study the explicit continuous nowhere differentiable functions of Weierstrass, Takagi–van der Waerden, Bolzano, and others. Modern tools of functional analysis, measure theory, and Fourier analysis are applied to examine the generic nature of continuous nowhere differentiable functions, as well as linear structures within the (nonlinear) space of continuous nowhere differentiable functions. To round out the presentation, advanced techniques from several areas of mathematics are brought together to give a state-of-the-art analysis of Riemann’s continuous, and purportedly nowhere differentiable, function. For the reader’s benefit, claims requiring elaboration, and open problems, are clearly indicated. An a...

  10. Use of the chloroplast gene ycf1 for the genetic differentiation of pine nuts obtained from consumers experiencing dysgeusia.

    Science.gov (United States)

    Handy, Sara M; Parks, Matthew B; Deeds, Jonathan R; Liston, Aaron; de Jager, Lowri S; Luccioli, Stefano; Kwegyir-Afful, Ernest; Fardin-Kia, Ali R; Begley, Timothy H; Rader, Jeanne I; Diachenko, Gregory W

    2011-10-26

    Pine nuts are a part of traditional cooking in many parts of the world and have seen a significant increase in availability/use in the United States over the past 10 years. The U.S. Food and Drug Administration (US FDA) field offices received 411 complaints from U.S. consumers over the past three years regarding taste disturbances following the consumption of pine nuts. Using analysis of fatty acids by gas chromatography with flame ionization detection, previous reports have implicated nuts from Pinus armandii (Armand Pine) as the causative species for similar taste disturbances. This method was found to provide insufficient species resolution to link FDA consumer complaint samples to a single species of pine, particularly when samples contained species mixtures of pine nuts. Here we describe a DNA based method for differentiating pine nut samples using the ycf1 chloroplast gene. Although the exact cause of pine nut associated dysgeusia is still not known, we found that 15 of 15 samples from consumer complaints contained at least some Pinus armandii, confirming the apparent association of this species with taste disturbances.

  11. Comparison of Methods for Protein Extraction from Pine Needles

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Extraction of proteins from pine needles for proteomic analysis has long been a challenge for scientists. We compared three different protein extraction methods including sucrose, Tris-HCl and trichloroacetic acid (TCA)/acetone (TCA method) to determine their efficiency in separating pine needle proteins by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and two-dimensional PAGE (2D-PAGE). Proteins were then separated by SDS-PAGE. Among three methods the method using sucrose extraction buffer showed the highest efficiency and highest quality in separating proteins. In addition, clearer and more stable strips were detected by SDS-PAGE using sucrose extraction buffer. When the proteins extracted using sucrose extraction buffer were separated by 2D-PAGE, more than 300 protein spots, with isoelectric points (PI) ranging from 4.0 to 7.0 and molecular weights (MW) from 6.5 to 97.4 kD, were observed. This confirmed that the method with sucrose extraction buffer was an efficient and reliable method for extracting proteins from pine needles.

  12. Regeneration of transgenic loblolly pine expressing genes for salt tolerance

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Salinity stress is one of the most serious factors limiting the distribution and productivity of crops and forest trees. The detrimental effects of salt on plants are a consequence of both a water deficit resulting in osmotic stress and the effects of excess sodium ions on critical biochemical process. A novel approach to improve salt tolerance has been established by using the technology of plant genetic transformation and using loblolly pine (Pinus taeda L.) as a model plant. Mature zygotic embryos of loblolly pine were infected with Agrobacterium tumefaciens strain LBA 4404 harbouring the plasmid pBIGM which carrying the mannitol-1-phosphate dehydrogenase (Mt1D) and glucitol-6-phosphate dehydrogenase (GutD). Organogenic transgenic calli and transgenic regenerated plantlets were produced on selection medium containing 15mg/L kanamycin and confirmed by Southern blot analysis of genomic DNA. Salt tolerance assays demonstrated that the salt tolerance of transgenic calli and regenerated plantlets were increased. These results suggested that an efficient Agrobacterium tumefaciens-mediated transformation protocol for stable integration of foreign genes into loblolly pine has been developed and this could be useful for the future studies on engineering breeding of conifers.

  13. The power of multiplexed functional analysis of genetic variants.

    Science.gov (United States)

    Gasperini, Molly; Starita, Lea; Shendure, Jay

    2016-10-01

    New technologies have recently enabled saturation mutagenesis and functional analysis of nearly all possible variants of regulatory elements or proteins of interest in single experiments. Here we discuss the past, present, and future of such multiplexed (functional) assays for variant effects (MAVEs). MAVEs provide detailed insight into sequence-function relationships, and they may prove critical for the prospective clinical interpretation of genetic variants.

  14. Classwide Functional Analysis and Treatment of Preschoolers' Disruptive Behavior

    Science.gov (United States)

    Poole, Veena Y.; Dufrene, Brad A.; Sterling, Heather E.; Tingstrom, Daniel H.; Hardy, Christina M.

    2012-01-01

    Relatively few functional assessment and intervention studies have been conducted in preschool classrooms with children of typical development who engage in high incidence problem behaviors. Moreover, limited studies have used functional assessment procedures with the class as the unit of analysis. This study included functional analyses and a…

  15. Rapid Increases in forest understory diversity and productivity following a mountain pine beetle (Dendroctonus ponderosae) outbreak in pine forests.

    Science.gov (United States)

    Pec, Gregory J; Karst, Justine; Sywenky, Alexandra N; Cigan, Paul W; Erbilgin, Nadir; Simard, Suzanne W; Cahill, James F

    2015-01-01

    The current unprecedented outbreak of mountain pine beetle (Dendroctonus ponderosae) in lodgepole pine (Pinus contorta) forests of western Canada has resulted in a landscape consisting of a mosaic of forest stands at different stages of mortality. Within forest stands, understory communities are the reservoir of the majority of plant species diversity and influence the composition of future forests in response to disturbance. Although changes to stand composition following beetle outbreaks are well documented, information on immediate responses of forest understory plant communities is limited. The objective of this study was to examine the effects of D. ponderosae-induced tree mortality on initial changes in diversity and productivity of understory plant communities. We established a total of 110 1-m2 plots across eleven mature lodgepole pine forests to measure changes in understory diversity and productivity as a function of tree mortality and below ground resource availability across multiple years. Overall, understory community diversity and productivity increased across the gradient of increased tree mortality. Richness of herbaceous perennials increased with tree mortality as well as soil moisture and nutrient levels. In contrast, the diversity of woody perennials did not change across the gradient of tree mortality. Understory vegetation, namely herbaceous perennials, showed an immediate response to improved growing conditions caused by increases in tree mortality. How this increased pulse in understory richness and productivity affects future forest trajectories in a novel system is unknown.

  16. Rapid Increases in forest understory diversity and productivity following a mountain pine beetle (Dendroctonus ponderosae outbreak in pine forests.

    Directory of Open Access Journals (Sweden)

    Gregory J Pec

    Full Text Available The current unprecedented outbreak of mountain pine beetle (Dendroctonus ponderosae in lodgepole pine (Pinus contorta forests of western Canada has resulted in a landscape consisting of a mosaic of forest stands at different stages of mortality. Within forest stands, understory communities are the reservoir of the majority of plant species diversity and influence the composition of future forests in response to disturbance. Although changes to stand composition following beetle outbreaks are well documented, information on immediate responses of forest understory plant communities is limited. The objective of this study was to examine the effects of D. ponderosae-induced tree mortality on initial changes in diversity and productivity of understory plant communities. We established a total of 110 1-m2 plots across eleven mature lodgepole pine forests to measure changes in understory diversity and productivity as a function of tree mortality and below ground resource availability across multiple years. Overall, understory community diversity and productivity increased across the gradient of increased tree mortality. Richness of herbaceous perennials increased with tree mortality as well as soil moisture and nutrient levels. In contrast, the diversity of woody perennials did not change across the gradient of tree mortality. Understory vegetation, namely herbaceous perennials, showed an immediate response to improved growing conditions caused by increases in tree mortality. How this increased pulse in understory richness and productivity affects future forest trajectories in a novel system is unknown.

  17. Exploiting Genetic Variation of Fiber Components and Morphology in Juvenile Loblolly Pine

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Hou-Min; Kadia, John F.; Li, Bailian; Sederoff, Ron

    2005-06-30

    straightness were found with cellulose content, fiber length and coarseness, suggesting that selection on growth or stem straightness would results in favorable response in chemical wood traits. We have developed a series of methods for application of functional genomics to understanding the molecular basis of traits important to tree breeding for improved chemical and physical properties of wood. Two types of technologies were used, microarray analysis of gene expression, and profiling of soluble metabolites from wood forming tissues. We were able to correlate wood property phenotypes with expression of specific genes and with the abundance of specific metabolites using a new database and appropriate statistical tools. These results implicate a series of candidate genes for cellulose content, lignin content, hemicellulose content and specific extractible metabolites. Future work should integrate such studies in mapping populations and genetic maps to make more precise associations of traits with gene locations in order to increase the predictive power of molecular markers, and to distinguish between different candidate genes associated by linkage or by function. This study has found that loblolly pine families differed significantly for cellulose yield, fiber length, fiber coarseness, and less for lignin content. The implication for forest industry is that genetic testing and selection for these traits is possible and practical. With sufficient genetic variation, we could improve cellulose yield, fiber length, fiber coarseness, and reduce lignin content in Loblolly pine. With the continued progress in molecular research, some candidate genes may be used for selecting cellulose content, lignin content, hemicellulose content and specific extractible metabolites. This would accelerate current breeding and testing program significantly, and produce pine plantations with not only high productivity, but desirable wood properties as well.

  18. Functional Foods Baseline and Requirements Analysis

    Science.gov (United States)

    Cooper, M. R.; Bermudez-Aguirre, L. D.; Douglas, G.

    2015-01-01

    Current spaceflight foods were evaluated to determine if their nutrient profile supports positioning as a functional food and if the stability of the bioactive compound within the food matrix over an extended shelf-life correlated with the expected storage duration during the mission. Specifically, the research aims were: Aim A. To determine the amount of each nutrient in representative spaceflight foods immediately after processing and at predetermined storage time to establish the current nutritional state. Aim B. To identify the requirements to develop foods that stabilize these nutrients such that required concentrations are maintained in the space food system throughout long duration missions (up to five years). Aim C. To coordinate collaborations with health and performance groups that may require functional foods as a countermeasure.

  19. Functional Analysis of P4-ATPases

    DEFF Research Database (Denmark)

    Theorin, Lisa

    studies have identified P4-ATPases as phospholipid transporters that interact and cooperate with cytosolic coat proteins to drive vesicle formation at the trans-Golgi network, endosome compartment and plasma membrane. Our hypothesis is that by flipping a lipid the P4-ATPases either provide essential......Across membranes of the late secretory pathway in eukaryotic cells an asymmetric lipid distribution is maintained, with the lipids phosphatidylserine and phosphatidylethanolamine restricted to the cytoplasmic leaflet of the membrane. In recent years a subgroup of P-type ATPases, P4-ATPases, has...... and mammalian P4-ATPases have been studied extensively and the physiological function is mostly known, while the exact biochemistry and specific activity is mostly unknown. Even though the plant Arabidopsis thaliana has 12 P4-ATPases, not much is known about their function. In this study, the biochemical...

  20. Truncated Moment Analysis of Nucleon Structure Functions

    Energy Technology Data Exchange (ETDEWEB)

    A. Psaker; W. Melnitchouk; M. E. Christy; C. E. Keppel

    2007-11-16

    We employ a novel new approach using "truncated" moments, or integrals of structure functions over restricted regions of x, to study local quark-hadron duality, and the degree to which individual resonance regions are dominated by leading twists. Because truncated moments obey the same Q^2 evolution equations as the leading twist parton distributions, this approach makes possible for the first time a description of resonance region data and the phenomenon of quark-hadron duality directly from QCD.

  1. Functional analysis of the Fusarium graminearum phosphatome.

    Science.gov (United States)

    Yun, Yingzi; Liu, Zunyong; Yin, Yanni; Jiang, Jinhua; Chen, Yun; Xu, Jin-Rong; Ma, Zhonghua

    2015-07-01

    Phosphatases are known to play important roles in the regulation of various cellular processes in eukaryotes. However, systematic characterization of the phosphatome has not been reported in phytopathogenic fungi. The wheat scab fungus Fusarium graminearum contains 82 putative phosphatases. The biological functions of each phosphatase were investigated in this study. Although 11 phosphatase genes appeared to be essential, deletion mutants of the other 71 phosphatase genes were obtained and characterized for changes in 15 phenotypes, including vegetative growth, nutrient response and virulence. Overall, the deletion of 63 phosphatase genes resulted in changes in at least one of the phenotypes assayed. Interestingly, the deletion of four genes (Fg06297, Fg03333, Fg03826 and Fg07932) did not dramatically affect hyphal growth, but led to strongly reduced virulence. Western blot analyses showed that three phosphatases (Fg10516, Fg03333 and Fg12867) functioned as negative regulators of the mitogen-activated protein kinase signaling pathways. In addition, we found, for the first time, that FgCdc14 is dispensable for growth, but plays an important role in ribosome biogenesis. Overall, in this first functional characterization of the fungal phosphatome, phosphatases important for various aspects of hyphal growth, development, plant infection and secondary metabolism were identified in the phytopathogenic fungus F. graminearum.

  2. Isolation and immunological characterization analysis of allergen in pine pollen%江西南昌郊区松树花粉过敏原的分离与鉴定

    Institute of Scientific and Technical Information of China (English)

    罗忠勤; 陈小文

    2014-01-01

    目的:对江西南昌郊区松树花粉的变应原组分进行分离及免疫学鉴定。方法提取松树花粉粗提液,然后通过十二烷基磺酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)对松树花粉的蛋白质组分进行分离并测定其分子量,采用免疫印迹(West-ern-blotting)法鉴定其变应原成分。结果松树花粉粗提液有10余条蛋白带,其中分子量为12kD、26kD和100kD的蛋白可与松树花粉过敏性病人血清IgE 结合,其中26kD为主要变应原。结论对松树花粉变应原进行了初步的分离、鉴定,为进一步对松树花粉变态反应性疾病的临床诊断和治疗提供初步的实验基础。%Objective To isolate and characterize the allergenic components of pine pollen. Methods Pine pollen coarse ex-traction fluid was extracted, and the proteins of pine pollen extraction and their molecular were analyzed by SDS-PAGE. To char-acterize the allergenic components, pine pollen coarse extraction fluid was analyzed by western-blotting. Results The pine pollen coarse extraction fluid displayed more than ten protein bands by SDS-PAGE,and three bands (relative molecular weights were 12 kD, 26 kD and 100 kD, respectively) could react with IgE in the sera of patients with allergy to pine pollen. Among the three bands, the 26 kD protein was the major allergen. Conclusion Our study of preliminary isolation and immunological characteriza-tion of the allergenic components in pine pollen will be used as a base for diagnosis and therapy of pine pollen related allergy.

  3. Mapping quantitative trait loci controlling early growth in a (longleaf pine x slash pine) x slash pine BC(1) family.

    Science.gov (United States)

    Weng, C.; Kubisiak, L.; Nelson, D.; Stine, M.

    2002-04-01

    Random amplified polymorphic DNA (RAPD) markers were employed to map the genome and quantitative trait loci controlling the early growth of a pine hybrid F(1) tree ( Pinus palustris Mill. x P. elliottii Engl.) and a recurrent slash pine tree ( P. elliottii Engl.) in a (longleaf pine x slash pine) x slash pine BC(1) family consisting of 258 progeny. Of the 150 hybrid F(1) parent-specific RAPD markers, 133 were mapped into 17 linkage groups covering a genetic distance of 1,338.2 cM. Of the 116 slash pine parent-specific RAPD markers, 83 were mapped into 19 linkage groups covering a genetic distance of 994.6 cM. A total of 11 different marker intervals were found to be significantly associated with 13 of the 20 traits on height and diameter growth using MAPMAKER/QTL. Nine of the eleven marker intervals were unique to the hybrid parent 488 genome, and two were unique to the recurrent parent 18-27 genome. The amount of phenotypic variance explained by the putative QTLs ranged from 3.6% to 11.0%. Different QTLs were detected at different ages. Two marker intervals from the hybrid parent 488 were found to have QTL by environment interactions.

  4. ANALYSIS TO NEYMAN-PEARSON CLASSIFICATION WITH CONVEX LOSS FUNCTION

    Institute of Scientific and Technical Information of China (English)

    Min Han; Dirong Chen; Zhaoxu Sun

    2008-01-01

    Neyman-Pearson classification has been studied in several articles before.But they all proceeded in the classes of indicator functions with indicator function as the loss function,which make the calculation to be difficult.This paper investigates NeymanPearson classification with convex loss function in the arbitrary class of real measurable functions.A general condition is given under which Neyman-Pearson classification with convex loss function has the same classifier as that with indicator loss function.We give analysis to NP-ERM with convex loss function and prove it's performance guarantees.An example of complexity penalty pair about convex loss function risk in terms of Rademacher averages is studied,which produces a tight PAC bound of the NP-ERM with convex loss function.

  5. Longleaf Pine Survival, Growth, and Recruitment Experiment

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This experiment was to determine mean survivorship, growth rate, and recruitment rate of longleaf pine seedlings planted on different soil types on the refuge. Open...

  6. TBT recommends : Courtney Pine. Hansa disco night

    Index Scriptorium Estoniae

    2005-01-01

    Inglise jazzsaksofonisti Courtney Pine heliplaadi "Resistance" esitluskontserdist 15. dets. Rock Cafés Tallinnas. Inglise laulja Chris Norman läti ansamblitega üritusel "Hansa disco night Nr.4" 9. dets. Kipsala Hallis Riias

  7. Quantification of acetone emission from pine plants

    Institute of Scientific and Technical Information of China (English)

    SHAO; Min; (邵敏); Jürgen; Wildt

    2002-01-01

    Acetone emission from pine plants (pinus sylvestris) is measured by continuously stirred tank reactor. Under a constant light intensity, acetone emission rates increase exponentially with leaf temperature. When leaf temperature is kept constant, acetone emission increases with light intensity. And acetone emission in darkness is also detected. Acetone emitted from pine is quickly labeled by 13C when the plants are exposed to air with 630 mg/m3 13CO2. However, no more than 20% of acetone is 13C labeled. Acetone emission from pine may be due to both leaf temperature- controlled process and light intensity-controlled process. Based on these understandings, an algorithm is used to describe the short term acetone emission rates from pine.

  8. TBT recommends : Courtney Pine. Hansa disco night

    Index Scriptorium Estoniae

    2005-01-01

    Inglise jazzsaksofonisti Courtney Pine heliplaadi "Resistance" esitluskontserdist 15. dets. Rock Cafés Tallinnas. Inglise laulja Chris Norman läti ansamblitega üritusel "Hansa disco night Nr.4" 9. dets. Kipsala Hallis Riias

  9. Analysis of the Bogoliubov free energy functional

    DEFF Research Database (Denmark)

    Reuvers, Robin

    In this thesis, we analyse a variational reformulation of the Bogoliubov approximation that is used to describe weakly-interacting translationally-invariant Bose gases. For the resulting model, the `Bogoliubov free energy functional', we demonstrate existence of minimizers as well as the presence...... of a phase transition to Bose{Einstein condensation, and establish the phase diagram. We also give a calculation of the critical temperature assuming the gas is dilute, and nd that it agrees with earlier numerical studies. The thesis contains an introduction, a physical review paper outlining the main...

  10. Density functional and neural network analysis

    DEFF Research Database (Denmark)

    Jalkanen, K. J.; Bohr, Henrik

    1997-01-01

    Density functional theory (DFT) calculations have been carried out for hydrated L-alanine, L-alanyl-L-alanine and N-acetyl L-alanine N'-methylamide and examined with respect to the effect of water on the structure, the vibrational frequencies, vibrational absorption (VA) and vibrational circular...... dichroism (VCD) intensities. The large changes due to hydration on the structures, relative stability of conformers, and in the VA and VCD spectra observed experimentally are reproduced by the DFT calculations. Furthermore a neural network was constructed for reproducing the inverse scattering data (infer...

  11. Functional Analysis for Double Shell Tank (DST) Subsystems

    Energy Technology Data Exchange (ETDEWEB)

    SMITH, D.F.

    2000-08-22

    This functional analysis identifies the hierarchy and describes the subsystem functions that support the Double-Shell Tank (DST) System described in HNF-SD-WM-TRD-007, System Specification for the Double-Shell Tank System. Because of the uncertainty associated with the need for upgrades of the existing catch tanks supporting the Waste Feed Delivery (WFD) mission, catch tank functions are not addressed in this document. The functions identified herein are applicable to the Phase 1 WFD mission only.

  12. Functional analysis of fungal polyketide biosynthesis genes.

    Science.gov (United States)

    Fujii, Isao

    2010-05-01

    Fungal polyketides have huge structural diversity from simple aromatics to highly modified complex reduced-type compounds. Despite such diversty, single modular iterative type I polyketide synthases (iPKSs) are responsible for their carbon skeleton construction. Using heterologous expression systems, we have studied on ATX, a 6-methylsalicylic acid synthase from Aspergillus terreus as a model iPKS. In addition, iPKS functions involved in fungal spore pigment biosynthesis were analyzed together with polyketide-shortening enzymes that convert products of PKSs to shorter ketides by hydrolytic C-C bond cleavage. In our studies on reducing-type iPKSs, we cloned and expressed PKS genes, pksN, pksF, pksK and sol1 from Alternaria solani. The sol gene cluster was found to be involved in solanapyrone biosynthesis and sol5 was identified to encode solanapyrone synthase, a Diels-Alder enzyme. Our fungal PKS studies were further extended to identify the function of PKS-nonribosomal peptide synthase involved in cyclopiazonic acid biosynthesis.

  13. Composition and Bioactivity of Lipophilic Metabolites from Needles and Twigs of Korean and Siberian Pines (Pinus koraiensis Siebold & Zucc. and Pinus sibirica Du Tour).

    Science.gov (United States)

    Shpatov, Alexander V; Popov, Sergey A; Salnikova, Olga I; Kukina, Tatyana P; Shmidt, Emma N; Um, Byung Hun

    2017-02-01

    Lipophilic extractive metabolites in different parts of the shoot system (needles and defoliated twigs) of Korean pine, Pinus koraiensis, and Siberian pine, Pinus sibirica, were studied by GC/MS. Korean pine needles comprised mainly bornyl p-coumarate, heterocyclic 15-O-functionalized labdane type acids (lambertianic acid), 10-nonacosanol, sterols and their esters. While Siberian pine needles contained less bornyl p-coumarate, lambertianic acid, sterols and their esters, but were richer in other 15-O-functionalized labdane type acids. The major components of the twig extract of P. koraiensis were lambertianic acid, abietane and isopimarane type acids, cembrane type alcohols, 8-O-functionalized labdanoids, sterols, sterol esters, and acylglycerols. The same extract of P. sibirica differed in larger amounts of other 15-O-functionalized labdane type acids and pinolenic acid glycerides, but in less quantities of cembranoids and 8-O-functionalized labdanoids. The labdane type pinusolic acid was detected for the first time in Korean pine. P. koraiensis was found to be unique in the genus for an ability to synthesize phyllocladane diterpenoids. The content of bound Δ(5) -unsaturated polymethylene-interrupted fatty acids in the twig extracts of the both pines was similar or superior to that in their seed oil. Among the pines' metabolites tested isocembrol was strongest in inhibition of both α-glucosidase (IC50 2.9 μg/ml) and NO production in activated macrophages (IC50 3.6 μg/ml).

  14. GOMA: functional enrichment analysis tool based on GO modules

    Institute of Scientific and Technical Information of China (English)

    Qiang Huang; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang

    2013-01-01

    Analyzing the function of gene sets is a critical step in interpreting the results of high-throughput experiments in systems biology.A variety of enrichment analysis tools have been developed in recent years,but most output a long list of significantly enriched terms that are often redundant,making it difficult to extract the most meaningful functions.In this paper,we present GOMA,a novel enrichment analysis method based on the new concept of enriched functional Gene Ontology (GO) modules.With this method,we systematically revealed functional GO modules,i.e.,groups of functionally similar GO terms,via an optimization model and then ranked them by enrichment scores.Our new method simplifies enrichment analysis results by reducing redundancy,thereby preventing inconsistent enrichment results among functionally similar terms and providing more biologically meaningful results.

  15. GOMA: functional enrichment analysis tool based on GO modules

    Science.gov (United States)

    Huang, Qiang; Wu, Ling-Yun; Wang, Yong; Zhang, Xiang-Sun

    2013-01-01

    Analyzing the function of gene sets is a critical step in interpreting the results of high-throughput experiments in systems biology. A variety of enrichment analysis tools have been developed in recent years, but most output a long list of significantly enriched terms that are often redundant, making it difficult to extract the most meaningful functions. In this paper, we present GOMA, a novel enrichment analysis method based on the new concept of enriched functional Gene Ontology (GO) modules. With this method, we systematically revealed functional GO modules, i.e., groups of functionally similar GO terms, via an optimization model and then ranked them by enrichment scores. Our new method simplifies enrichment analysis results by reducing redundancy, thereby preventing inconsistent enrichment results among functionally similar terms and providing more biologically meaningful results. PMID:23237213

  16. Noninvasive analysis of human neck muscle function

    Science.gov (United States)

    Conley, M. S.; Meyer, R. A.; Bloomberg, J. J.; Feeback, D. L.; Dudley, G. A.

    1995-01-01

    STUDY DESIGN. Muscle use evoked by exercise was determined by quantifying shifts in signal relaxation times of T2-weighted magnetic resonance images. Images were collected at rest and after exercise at each of two intensities (moderate and intense) for each of four head movements: 1) extension, 2) flexion, 3) rotation, and 4) lateral flexion. OBJECTIVE. This study examined the intensity and pattern of neck muscle use evoked by various movements of the head. The results will help elucidate the pathophysiology, and thus methods for treating disorders of the cervical musculoskeletal system. SUMMARY OF BACKGROUND DATA. Exercise-induced contrast shifts in T2 has been shown to indicate muscle use during the activity. The noninvasive nature of magnetic resonance imaging appears to make it an ideal approach for studying the function of the complex neuromuscular system of the neck. METHODS. The extent of T2 increase was examined to gauge how intensely nine different neck muscles or muscle pairs were used in seven subjects. The absolute and relative cross-sectional area of muscle showing a shift in signal relaxation was assessed to infer the pattern of use among and within individual neck muscles or muscle pairs. RESULTS. Signal relaxation increased with exercise intensity for each head movement. The absolute and relative cross-sectional area of muscle showing a shift in signal relaxation also increased with exercise load. Neck muscles or muscle pairs extensively used to perform each head movement were: extension--semispinalis capitis and cervicis and splenius capitis; flexion--sternocleidomastoid and longus capitis and colli; rotation--splenius capitis, levator scapulae, scalenus, semispinalis capitis ipsilateral to the rotation, and sternocleidomastoid contralateral; and lateral flexion--sternocleidomastoid CONCLUSION. The results of this study, in part, agree with the purported functions of neck muscles derived from anatomic location. This also was true for the few

  17. Characteristics of substrates used for nursery production of Austrian pine and Scots pine

    Directory of Open Access Journals (Sweden)

    Vratuša Vesna

    2002-01-01

    Full Text Available This paper discusses research results concerning properties of substrates used for nursery production of Austrian pine (Pinus nigra Arn and Scots pine (Pinus silvestris L in the experimental field of the Faculty of Forestry in Belgrade There is no doubt that peat is the most favorable substrate for successful massive nursery production of various woody species. Favorable physical, chemical and biochemical properties guarantee nursery production success, on condition that all technical and technological procedures, characteristic for this production, are recognized. Certain shortcomings that may occur with different kinds of peat (inadequate air capacity, nutrient deficiency, excessive acidity, etc may relatively easily be overcome with appropriate materials and procedures. Nevertheless, the main shortcoming of this most widely used nursery substrate, especially when the countries with economies in transition are concerned, is its high price. In order to overcome this problem, it is necessary to use domestic resources for creating a substrate of approximately the same characteristics, but much lower price Research results regarding the substrate – mixture "Goč 1" show that this substrate, comprising 30% silica sand, 20% earthworm manure, and 50% bark humus, is characterised by all necessary starting prerequisites for fulfilling the cited functions. This material represents loamy sand of almost neutral reaction (pHH2O=6.9, pHCaCl2=6.40, and even though its CEC is relatively modest (33.08 cmol(+ x kg–1, it is extremely well supplied with bases (V=94.32%. Also, "Goč 1" is rich in humus (8.94%, with relatively high content of total N (0.47%, and favorable C:N ratio (11.0. It is extremely well supplied with available phosphorus and potassium (>50 cmol(+ x kg–1. Further research regarding stability of this artificial substrate and alterations of its physical, chemical, and biochemical properties in the course of exploitation, together with

  18. Ectomycorrhizal communities of ponderosa pine and lodgepole pine in the south-central Oregon pumice zone.

    Science.gov (United States)

    Garcia, Maria O; Smith, Jane E; Luoma, Daniel L; Jones, Melanie D

    2016-05-01

    Forest ecosystems of the Pacific Northwest of the USA are changing as a result of climate change. Specifically, rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. Simultaneously, flux in environmental conditions within the historic P. contorta range may facilitate the encroachment of P. ponderosa into P. contorta territory. Furthermore, successful pine species migration may be constrained by the distribution or co-migration of ectomycorrhizal fungi (EMF). Knowledge of the linkages among soil fungal diversity, community structure, and environmental factors is critical to understanding the organization and stability of pine ecosystems. The objectives of this study were to establish a foundational knowledge of the EMF communities of P. ponderosa and P. contorta in the Deschutes National Forest, OR, USA, and to examine soil characteristics associated with community composition. We examined EMF root tips of P. ponderosa and P. contorta in soil cores and conducted soil chemistry analysis for P. ponderosa cores. Results indicate that Cenococcum geophilum, Rhizopogon salebrosus, and Inocybe flocculosa were dominant in both P. contorta and P. ponderosa soil cores. Rhizopogon spp. were ubiquitous in P. ponderosa cores. There was no significant difference in the species composition of EMF communities of P. ponderosa and P. contorta. Ordination analysis of P. ponderosa soils suggested that soil pH, plant-available phosphorus (Bray), total phosphorus (P), carbon (C), mineralizable nitrogen (N), ammonium (NH4), and nitrate (NO3) are driving EMF community composition in P. ponderosa stands. We found a significant linear relationship between EMF species richness and mineralizable N. In conclusion, P. ponderosa and P. contorta, within the Deschutes National Forest, share the same dominant EMF species, which implies that P. ponderosa may be able to successfully establish

  19. Function analysis for waste information systems

    Energy Technology Data Exchange (ETDEWEB)

    Sexton, J.L.; Neal, C.T.; Heath, T.C.; Starling, C.D.

    1996-04-01

    This study has a two-fold purpose. It seeks to identify the functional requirements of a waste tracking information system and to find feasible alternatives for meeting those requirements on the Oak Ridge Reservation (ORR) and the Portsmouth (PORTS) and Paducah (PGDP) facilities; identify options that offer potential cost savings to the US government and also show opportunities for improved efficiency and effectiveness in managing waste information; and, finally, to recommend a practical course of action that can be immediately initiated. In addition to identifying relevant requirements, it also identifies any existing requirements that are currently not being completely met. Another aim of this study is to carry out preliminary benchmarking by contacting representative companies about their strategic directions in waste information. The information obtained from representatives of these organizations is contained in an appendix to the document; a full benchmarking effort, however, is beyond the intended scope of this study.

  20. Static Analysis of Functionally Graded Composite Beams

    Science.gov (United States)

    Das, S.; Sarangi, S. K.

    2016-09-01

    This paper presents a study of functionally graded (FG) composite beam. The FG material for the beam is considered to be composed of different layers of homogeneous material. The fiber volume fraction corresponding to each layer is calculated by considering its variation along the thickness direction (z) according to a power law. Accordingly, the effective properties of the homogeneous layers are estimated and a beam composed of this FG material is modelled using the commercially available ANSYS software. The solid 186 layered structural solid element has been used for discretization of the model of the FG beam. The model developed is validated by comparing the results with those numerical results available in literature. Results are presented for simply supported and fixed boundary conditions for the FG beam. The stress distribution across the thickness of the FG composite beam has also been analyzed.

  1. Additional file 3: Figure S2. of Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors

    OpenAIRE

    Liu, Jun-Jun; Sturrock, Rona; Sniezko, Richard; Williams, Holly; Benton, Ross; Zamany, Arezoo

    2015-01-01

    Functional classification of the Cronartium ribicola reference transcriptome assembled de novo from RNA-seq data based on gene ontology (GO). Subcategories of biological process, molecular function, and cellular component are indicated as: GO:0008152, metabolic process; GO:0009987, cellular process; GO:0044699, single-organism process; GO:0050896, response to stimulus; GO:0051179, localization; GO:0065007, biological regulation; GO:0071840, cellular component organization or biogenesis; GO:00...

  2. Resource release in lodgepole pine across a chronosequence of mountain pine beetle disturbance

    Science.gov (United States)

    Brayden, B. H.; Trahan, N. A.; Dynes, E.; Beatty, S. W.; Monson, R. K.

    2011-12-01

    Over the past decade and a half Western North America has experienced a mountain pine beetle (Dendroctonus ponderosae) outbreak on a scale not previously recorded. Millions of hectares of lodgepole pine (Pinus contorta) in high elevation forests have been devastated. Although bark beetles are an important part of the endemic disturbance and regeneration regime in this region, the current unprecedented level of tree mortality will have a significant impact on resources and light availability to surviving trees. We established a decade-long chronosequence of mountain pine beetle disturbance, in a lodgepole stand, composed of three age classes: recent, intermediate, and longest (approximately 2-4, 5-7, 8-10 years respectively) time since initial infestation, as well as a control group. The focus of the study was a healthy tree and it's area of influence (1m radius from the bole), each located in a cluster of the respective chronosequence classes. In the 2011 growing season we have looked at rates of photosynthesis, and water potentials for the healthy trees, as well as soil respiration flux and gravimetric moisture in their areas of influence. We are also in the process of analyzing soil extractable dissolved organic carbon and nitrogen, ammonium, nitrate, and inorganic phosphorus, and plan to take hemispherical photographs and analyze tree-ring stable isotopes to determine if there is any reallocation of soil water use by the trees. Our data shows that photosynthetic rates in the youngest infestation class increase 10 percent over the control group and then falls well bellow the control by the oldest class. The mineral soil gravimetric moisture drastically increases between the control and the recent class and then maintains a consistently higher level through the remaining classes. In contrast, moisture in the organic soil significantly declines between the control and recent class before rebounding to pre-infestation levels in the two older classes. Soil

  3. Soil microbial communities of postpyrogenic pine forests (case study in Russia)

    Science.gov (United States)

    Maksimova, Ekaterina

    2015-04-01

    Soil microbial communities of postpyrogenic pine forests (case study in Russia) Ekaterina Maksimova Saint-Petersburg State University, Department of Applied Ecology, Saint-Petersburg, Russian Federation Institute of Ecology of Volga basin, Togljatty city, Russian Federation Soils, affected by catastrophic wildfires in 2010, were investigated in pine woods of Togljatty city, Samara region with the special reference to soil biological parameters. The analysis of microbial community of pine wood soils was carried out. It was revealed that wildfires have a negative impact on structure and functional activity of the microbial community postpyrogenic soils. In particular, they influence on values of eukaryotes-prokaryotes ratios, on CO2 emission intensity and on microorganisms functional state (as it was determined by microbial metabolic quotient) after wildfires. It has been revealed that microbial biomass values and basal respiration rate shows the trend to decrease in case of postfire sites compared with control (in 6.5 and 3.4 times respectively). The microbial biomass and basal respiration values have annual natural variability that testifies to a correlation of this process with soil hydrothermal conditions. However, it was also noted that wildfires don't affect on measured microbiological parameters in layers situated deeper than top 10 cm of soil. An increasing of the values, mentioned above, was observed 2-3 years after wildfires. Zone of microorganisms' activity has been moved to the lowermost soil layers. A disturbance of soil microbial communities' ecophysiological status after the fire is diagnosed by an increase of microbial metabolic quotient value. The metabolic activity of the microbial community decreases in a row: control→crown fire→ground fire. That testifies to certain intensive changes in the microbial community. High-temperature influence on microbial community has a significant effect on a total amount of bacteria, on a length of actinomycetes

  4. White pine blister rust resistance in limber pine: Evidence for a major gene

    Science.gov (United States)

    A. W. Schoettle; R. A. Sniezko; A. Kegley; K. S. Burns

    2014-01-01

    Limber pine (Pinus flexilis) is being threatened by the lethal disease white pine blister rust caused by the non-native pathogen Cronartium ribicola. The types and frequencies of genetic resistance to the rust will likely determine the potential success of restoration or proactive measures. These first extensive inoculation trials using individual tree seed collections...

  5. Mountain pine beetle attack in ponderosa pine: Comparing methods for rating susceptibility

    Science.gov (United States)

    David C. Chojnacky; Barbara J. Bentz; Jesse A. Logan

    2000-01-01

    Two empirical methods for rating susceptibility of mountain pine beetle attack in ponderosa pine were evaluated. The methods were compared to stand data modeled to objectively rate each sampled stand for susceptibly to bark-beetle attack. Data on bark-beetle attacks, from a survey of 45 sites throughout the Colorado Plateau, were modeled using logistic regression to...

  6. Mountain pine beetle attack alters the chemistry and flammability of lodgepole pine foliage

    Science.gov (United States)

    Wesley G. Page; Michael J. Jenkins; Justin B. Runyon

    2012-01-01

    During periods with epidemic mountain pine beetle (Dendroctonus ponderosae Hopkins) populations in lodgepole pine (Pinus contorta Dougl. ex Loud. var. latifolia Engelm.) forests, large amounts of tree foliage are thought to undergo changes in moisture content and chemistry brought about by tree decline and death. However, many of the presumed changes have yet to be...

  7. Influence of hardwood midstory and pine species on pine bole arthropods

    Science.gov (United States)

    Christopher S. Collins; Richard N. Conner; Daniel Saenz

    2002-01-01

    Arthropod density on the boles of loblolly pines (Pinus taeda) was compared between a stand with and stand without hardwood midstory and between a stand of loblolly and shortleaf pines (P. echinata) in the Stephen E Austin Experimental Forest, Nacogdoches Co., Texas, USA from September 1993 through July 1994. Arthropod density was...

  8. Dose-dependent pheromone responses of mountain pine beetle in stands of lodgepole pine

    Science.gov (United States)

    Daniel R. Miller; B. Staffan Lindgren; John H. Borden

    2005-01-01

    We conducted seven behavioral choice tests with Lindgren multiple-funnel traps in stands of mature lodgepole pine in British Columbia, from 1988 to 1994, to determine the dosedependent responses of the mountain pine beetle, Dendroctonus ponderosae Hopkins, to its pheromones. Amultifunctional dose-dependent response was exhibited by D. ...

  9. The influence of white pine blister rust on seed dispersal in whitebark pine

    Science.gov (United States)

    Shawn T. McKinney; Diana F. Tomback

    2007-01-01

    We tested the hypotheses that white pine blister rust (Cronartium ribicola J.C. Fisch.) damage in whitebark pine (Pinus albicaulis Engelm.) stands leads to reduced (1) seed cone density, (2) predispersal seed survival, and (3) likelihood of Clark's Nutcracker (Nucifraga columbiana (Wilson, 1811)) seed...

  10. Biology of a Pine Needle Sheath Midge, Contarinia Acuta Gagne (Diptera: Cecidomyiidae), on Loblolly Pine

    Science.gov (United States)

    Julie C. Weatherby; John C. Moser; Raymond J. Gagné; Huey N. Wallace

    1989-01-01

    The biology of a pine needle sheath midge, Contarinia acuta Gagné is described for a new host in Louisiana. This midge was found feeding within the needle sheath on elongating needles of loblolly pine, P. taeda L. Needle droop and partial defoliation were evident on heavily infested trees. Overwintering C. acuta...

  11. Histology of white pine blister rust in needles of resistant and susceptible eastern white pine

    Science.gov (United States)

    Joel A. Jurgens; Robert A. Blanchette; Paul J. Zambino; Andrew David

    2003-01-01

    White pine blister rust, Cronartium ribicola, has plagued the forests of North America for almost a century. Over past decades, eastern white pine (Pinus strobus) that appear to tolerate the disease have been selected and incorporated into breeding programs. Seeds from P. strobus with putative resistance were...

  12. Functional endoscopic analysis of beatbox performers.

    Science.gov (United States)

    Sapthavee, Andrew; Yi, Paul; Sims, H Steven

    2014-05-01

    Beatboxing is a form of vocal percussion in which performers imitate drum sounds, interspersed with vocalization and other sounds, using their vocal tracts. Although similarities between beatboxing and singing are expected because of the anatomy involved, the medical literature has a wealth of information on singing and minimal studies on beatboxing. The objective of our study was to report on a case series of functional endoscopic evaluation of the anatomy involved in beatboxing and determine whether beatboxing may be a risk factor for phonotrauma or if this form of vocalization might be protective of the vocal folds. We reviewed the flexible fiberoptic data collected from four beatbox artists who were evaluated at an outpatient Laryngology clinic. These records included videos of a standard flexible laryngoscopic evaluation during which the beatboxers performed beatbox sounds in isolation and in various combinations ("beats"), both standardized and improvised. All four participants were males aged 22-32 years. We found that voicing during beatboxing was not the same as full voice to have sustained phonation interlaced with percussive sounds. Performers overall demonstrated similarities in delivery of the same beatbox sounds, although subtle differences were noted between performers. Beatboxing is a complex form of vocal percussion using the entire vocal tract. Although similarities with singing in the anatomical structures and positioning are noted in beatboxing, there are several unique and interesting anatomical processes occurring. Use of the entire vocal tract, including the pharyngeal constrictors, may actually protect against glottic injury. Copyright © 2014 The Voice Foundation. Published by Mosby, Inc. All rights reserved.

  13. Modelling the Distribution of Forest-Dependent Species in Human-Dominated Landscapes: Patterns for the Pine Marten in Intensively Cultivated Lowlands.

    Directory of Open Access Journals (Sweden)

    Alessandro Balestrieri

    Full Text Available In recent years, the "forest-specialist" pine marten Martes martes has been reported to also occur also in largely fragmented, lowland landscapes of north-western Italy. The colonization of such an apparently unsuitable area provided the opportunity for investigating pine marten ecological requirements and predicting its potential south- and eastwards expansion. We collected available pine marten occurrence data in the flood plain of the River Po (N Italy and relate them to 11 environmental variables by developing nine Species Distribution Models. To account for inter-model variability we used average ensemble predictions (EP. EP predicted a total of 482 suitable patches (8.31% of the total study area for the pine marten. The main factors driving pine marten occurrence in the western River Po plain were the distance from watercourses and the distance from woods. EP suggested that the pine marten may further expand in the western lowland, whilst the negligible residual wood cover of large areas in the central and eastern plain makes the habitat unsuitable for the pine marten, except for some riparian corridors and the pine wood patches bordering the Adriatic coast. Based on our results, conservation strategies should seek to preserve remnant forest patches and enhance the functional connectivity provided by riparian corridors.

  14. Modelling the Distribution of Forest-Dependent Species in Human-Dominated Landscapes: Patterns for the Pine Marten in Intensively Cultivated Lowlands

    Science.gov (United States)

    Balestrieri, Alessandro; Bogliani, Giuseppe; Boano, Giovanni; Ruiz-González, Aritz; Saino, Nicola; Costa, Stefano; Milanesi, Pietro

    2016-01-01

    In recent years, the “forest-specialist” pine marten Martes martes has been reported to also occur also in largely fragmented, lowland landscapes of north-western Italy. The colonization of such an apparently unsuitable area provided the opportunity for investigating pine marten ecological requirements and predicting its potential south- and eastwards expansion. We collected available pine marten occurrence data in the flood plain of the River Po (N Italy) and relate them to 11 environmental variables by developing nine Species Distribution Models. To account for inter-model variability we used average ensemble predictions (EP). EP predicted a total of 482 suitable patches (8.31% of the total study area) for the pine marten. The main factors driving pine marten occurrence in the western River Po plain were the distance from watercourses and the distance from woods. EP suggested that the pine marten may further expand in the western lowland, whilst the negligible residual wood cover of large areas in the central and eastern plain makes the habitat unsuitable for the pine marten, except for some riparian corridors and the pine wood patches bordering the Adriatic coast. Based on our results, conservation strategies should seek to preserve remnant forest patches and enhance the functional connectivity provided by riparian corridors. PMID:27368056

  15. 激光对油松种子萌发、生长的 影响及作用机理%Study of laser function and influence on germination and growth of the Chinese pine seed

    Institute of Scientific and Technical Information of China (English)

    吴俊林; 袁胜利; 张宗权

    2001-01-01

    从植物生理学观点出发,用物理学方法讨论了He_Ne激光 对生物细胞膜的渗透性影响.结果表明,用He_Ne激光场辐照油松种子,有利于其细胞膜渗 透能力的提高,从而可产生有益的生物效应.%From the point of plant of physiology, by using phys ical methods, the paper presents a discussion the He_Ne laser affects the bio_me mbrane of permeability. The result shows that, if we use He_Ne laser field radia tes the Chinese pine seeds, it will be good for the improvement of cell membrane ′s permeability, and also it will have good effect on the biological effect.

  16. Influence of copper and formalin on the mycorrhiza of pine (Pinus kesiya Royle ex Gordon

    Directory of Open Access Journals (Sweden)

    G. D. Sharma

    2014-08-01

    Full Text Available Various concentrations of copper sulphate and formalin were tested for their effect on the efficiency of mycorrhizal functioning in pine seedlings. Low and higher doses of copper applied to the container grown seedling exhibited a less stimulatory effect than nedium doses. When applied in higher concentrations, the formalin caused mortality in young pine seedlings. The seedling yield and phosphate uptake was found maximum in 100 ppm applied concentration of copper. while słów growth and lower phosphate concentration was observed in the seedlings not given any copper treatment. Formalin at 50 ppm concentration slightly improved the seedling growth and phosphate uptake in mycorrhizal seedling as compared with untreated ones. Variation in the development and spread of ectomycorrhiza on the surface of roots of pine seedlings was also recorded in responses to copper and formalin treatments.

  17. Plasticity in dendroclimatic response across the distribution range of Aleppo pine (Pinus halepensis.

    Directory of Open Access Journals (Sweden)

    Martin de Luis

    Full Text Available We investigated the variability of the climate-growth relationship of Aleppo pine across its distribution range in the Mediterranean Basin. We constructed a network of tree-ring index chronologies from 63 sites across the region. Correlation function analysis identified the relationships of tree-ring index to climate factors for each site. We also estimated the dominant climatic gradients of the region using principal component analysis of monthly, seasonal, and annual mean temperature and total precipitation from 1,068 climatic gridpoints. Variation in ring width index was primarily related to precipitation and secondarily to temperature. However, we found that the dendroclimatic relationship depended on the position of the site along the climatic gradient. In the southern part of the distribution range, where temperature was generally higher and precipitation lower than the regional average, reduced growth was also associated with warm and dry conditions. In the northern part, where the average temperature was lower and the precipitation more abundant than the regional average, reduced growth was associated with cool conditions. Thus, our study highlights the substantial plasticity of Aleppo pine in response to different climatic conditions. These results do not resolve the source of response variability as being due to either genetic variation in provenance, to phenotypic plasticity, or a combination of factors. However, as current growth responses to inter-annual climate variability vary spatially across existing climate gradients, future climate-growth relationships will also likely be determined by differential adaptation and/or acclimation responses to spatial climatic variation. The contribution of local adaptation and/or phenotypic plasticity across populations to the persistence of species under global warming could be decisive for prediction of climate change impacts across populations. In this sense, a more complex forest dynamics

  18. Growth and Survival Variation among Scots Pine (Pinus sylvestris L.) Provenances.

    Science.gov (United States)

    Gülcü, Süleyman; Bilir, Nebi

    2017-01-01

    Tree height, basal diameter, and survival were examined in thirteen-year-old provenance test established by 30 seed sources of Scots pine (Pinus sylvestris L.) at two exotic sites of the species in Southern part of Turkey. Variations within provenance and among provenances and relations among the traits were estimated to compare Scots pine provenance and two other native species. Averages of tree height and basal diameter were 350 cm and 52.7 mm in Aydogmus site and 385 cm and 51.2 mm in Kemer site, respectively. There were large differences within and among provenances for the characters. Sites were similar (p > 0.05) for the characters, while there were significant differences (p ≤ 0.05) among provenances within site according to results of variance analysis (ANOVA). Scots pine provenances were higher and had more thickness than that of black pine (Pinus nigra Arnold) and Taurus cedar (Cedrus libani A. Rich.) which were natural species of the region. There were positive and significant (p pine and 53% in Taurus cedar for the sites respectively.

  19. Water status of bare—root seedlings of Chinese fir and Masson pine

    Institute of Scientific and Technical Information of China (English)

    YUFang-yuan; GUOXin-bao; XUXi-zeng

    2003-01-01

    Water relation parameters of bare-root seedlings of Chinese fir (Cunninghamia lanceolata Hook.)and Masson pine (Pinus massoniana Lamb.)were measured and changes of root growth potential as well as field survival rate of both species were studied after the bare-root seedlings were exposed in a sunny field condition.the results showed that masson pine had a lower osmotic potential(-2.07Mpa) at turgor loss point and at full turgor(-1.29Mpa),compared with Chinese fir(-1.80Mpa and -1.08Mpa respectively).The parameter Vp/Vo(63.27%) of Masson pine was higher than that of chinese fir (58.03%).This means that Masson pine has a stronger ability to tolerate desiccation,compared to Chinese fir according to analysis of above water relation parameters.Root growth potential and field survival rate decreased with prolonging duration of exposure.The field survival rate of both species was reduced to less than 40% after the seedling being exposed only two hours.Water potentials of -1.60 Mpa and -1.70 Mpa were suggested to be critical values for Chinese fir and Masson pine respectively in successful reforestation.

  20. Resin duct characteristics associated with tree resistance to bark beetles across lodgepole and limber pines.

    Science.gov (United States)

    Ferrenberg, Scott; Kane, Jeffrey M; Mitton, Jeffry B

    2014-04-01

    Bark beetles have recently killed billions of trees, yet conifer defenses are formidable and some trees resist attack. A primary anti-insect defense of pines is oleoresin from a system of resin ducts throughout the tree. Resin defense traits are heritable, and evidence suggests that resin duct characteristics are associated with resistance to insects. However, comparisons of resin ducts in trees killed by bark beetles to trees that resisted attack are unavailable. We compared vertical resin duct characteristics (number, density, and size) and growth rates from trees that were "resistant" (survived mass attack) versus "susceptible" (killed by attack) to bark beetles in lodgepole (Pinus contorta) and limber (Pinus flexilis) pines. Resistant trees of both species had significantly more resin ducts in recent growth than susceptible trees. Discriminant analysis (DA) correctly categorized 84% of lodgepole and 92% of limber pines as susceptible/resistant based on combinations of resin duct and growth characteristics from recent 5- through 20-year growth intervals. DA models using measures from only the most recent 5 years of growth correctly categorized 72 and 81% of lodgepole and limber pines, respectively. Comparing resistant to susceptible trees independent of species identity led to the correct categorization of 82% of trees based on factors from 5- to 20-year intervals, and 73% of trees using only resin duct counts from the most recent 5 years. We conclude that resin duct characteristics can be used to assess tree resistance to bark beetles across pine species, and offer a metric for management to enhance pest resistance.

  1. RAPD linkage mapping in a longleaf pine x slash pine F1 family.

    Science.gov (United States)

    Kubisiak, T L; Nelson, C D; Nance, W L; Stine, M

    1995-06-01

    Random amplified polymorphic DNAs (RAPDs) were used to construct linkage maps of the parent of a longleaf pine (Pinus palustris Mill.) slash pine (Pinus elliottii Englm.) F1 family. A total of 247 segregating loci [233 (1∶1), 14 (3∶1)] and 87 polymorphic (between parents), but non-segregating, loci were identified. The 233 loci segregating 1∶1 (testcross configuration) were used to construct parent-specific linkage maps, 132 for the longleaf-pine parent and 101 for the slash-pine parent. The resulting linkage maps consisted of 122 marker loci in 18 groups (three or more loci) and three pairs (1367.5 cM) for longleaf pine, and 91 marker loci in 13 groups and six pairs for slash pine (952.9 cM). Genome size estimates based on two-point linkage data ranged from 2348 to 2392 cM for longleaf pine, and from 2292 to 2372 cM for slash pine. Linkage of 3∶1 loci to testcross loci in each of the parental maps was used to infer further linkages within maps, as well as potentially homologous counterparts between maps. Three of the longleaf-pine linkage groups appear to be potentially homologous counterparts to four different slash-pine linkage groups. The number of heterozygous loci (previously testcross in parents) per F1 individual, ranged from 96 to 130. With the 87 polymorphic, but non-segregating, loci that should also be heterozygous in the F1 progeny, a maximum of 183-217 heterozygous loci could be available for mapping early height growth (EHG) loci and for applying genomic selection in backcross populations.

  2. Alternative Analysis of Classifications of Universal Managerial Functions

    Directory of Open Access Journals (Sweden)

    Chornii Heorhii M.

    2014-03-01

    Full Text Available The article is devoted to theoretical justification of classification of general managerial functions. Critical analysis of scientific works of eminent specialists in management gave a possibility to find out that classification of functions of the subject of management should be based on the objective cyclic change of the state of information by three stages: appearance of information, its concentration and transformation into a programme of specific actions. The article offers a classification model of the integrated managerial activity in social and mixed systems, which includes differentiation of managerial functions into three orders. Providing information, decision making and realisation of the decision are functions of the second order (basic in this model, while accounting, analysis, goal setting, planning, organisation, management and control – are, consequently, functions of the third order (derivatives. The article considers one specific example from management practice with the aim of verification of the author’s opinion regarding the processed classification of managerial functions.

  3. Mountain pine beetle selectivity in old-growth ponderosa pine forests, Montana, USA.

    Science.gov (United States)

    Knapp, Paul A; Soulé, Peter T; Maxwell, Justin T

    2013-05-01

    A historically unprecedented mountain pine beetle (MPB) outbreak affected western Montana during the past decade. We examined radial growth rates (AD 1860-2007/8) of co-occurring mature healthy and MPB-infected ponderosa pine trees collected at two sites (Cabin Gulch and Kitchen Gulch) in western Montana and: (1) compared basal area increment (BAI) values within populations and between sites; (2) used carbon isotope analysis to calculate intrinsic water-use efficiency (iWUE) at Cabin Gulch; and (3) compared climate-growth responses using a suite of monthly climatic variables. BAI values within populations and between sites were similar until the last 20-30 years, at which point the visually healthy populations had consistently higher BAI values (22-34%) than the MPB-infected trees. These results suggest that growth rates two-three decades prior to the current outbreak diverged between our selected populations, with the slower-growing trees being more vulnerable to beetle infestation. Both samples from Cabin Gulch experienced upward trends in iWUE, with significant regime shifts toward higher iWUE beginning in 1955-59 for the visually healthy trees and 1960-64 for the MPB-infected trees. Drought tolerance also varied between the two populations with the visually healthy trees having higher growth rates than MPB-infected trees prior to infection during a multi-decadal period of drying summertime conditions. Intrinsic water-use efficiency significantly increased for both populations during the past 150 years, but there were no significant differences between the visually healthy and MPB-infected chronologies.

  4. Using functional analysis diagrams to improve product reliability and cost

    Directory of Open Access Journals (Sweden)

    Ioannis Michalakoudis

    2016-12-01

    Full Text Available Failure mode and effects analysis and value engineering are well-established methods in the manufacturing industry, commonly applied to optimize product reliability and cost, respectively. Both processes, however, require cross-functional teams to identify and evaluate the product/process functions and are resource-intensive, hence their application is mostly limited to large organizations. In this article, we present a methodology involving the concurrent execution of failure mode and effects analysis and value engineering, assisted by a set of hierarchical functional analysis diagram models, along with the outcomes of a pilot application in a UK-based manufacturing small and medium enterprise. Analysis of the results indicates that this new approach could significantly enhance the resource efficiency and effectiveness of both failure mode and effects analysis and value engineering processes.

  5. Analyzing coastal environments by means of functional data analysis

    Science.gov (United States)

    Sierra, Carlos; Flor-Blanco, Germán; Ordoñez, Celestino; Flor, Germán; Gallego, José R.

    2017-07-01

    Here we used Functional Data Analysis (FDA) to examine particle-size distributions (PSDs) in a beach/shallow marine sedimentary environment in Gijón Bay (NW Spain). The work involved both Functional Principal Components Analysis (FPCA) and Functional Cluster Analysis (FCA). The grainsize of the sand samples was characterized by means of laser dispersion spectroscopy. Within this framework, FPCA was used as a dimension reduction technique to explore and uncover patterns in grain-size frequency curves. This procedure proved useful to describe variability in the structure of the data set. Moreover, an alternative approach, FCA, was applied to identify clusters and to interpret their spatial distribution. Results obtained with this latter technique were compared with those obtained by means of two vector approaches that combine PCA with CA (Cluster Analysis). The first method, the point density function (PDF), was employed after adapting a log-normal distribution to each PSD and resuming each of the density functions by its mean, sorting, skewness and kurtosis. The second applied a centered-log-ratio (clr) to the original data. PCA was then applied to the transformed data, and finally CA to the retained principal component scores. The study revealed functional data analysis, specifically FPCA and FCA, as a suitable alternative with considerable advantages over traditional vector analysis techniques in sedimentary geology studies.

  6. Functional Principal Components Analysis of Shanghai Stock Exchange 50 Index

    Directory of Open Access Journals (Sweden)

    Zhiliang Wang

    2014-01-01

    Full Text Available The main purpose of this paper is to explore the principle components of Shanghai stock exchange 50 index by means of functional principal component analysis (FPCA. Functional data analysis (FDA deals with random variables (or process with realizations in the smooth functional space. One of the most popular FDA techniques is functional principal component analysis, which was introduced for the statistical analysis of a set of financial time series from an explorative point of view. FPCA is the functional analogue of the well-known dimension reduction technique in the multivariate statistical analysis, searching for linear transformations of the random vector with the maximal variance. In this paper, we studied the monthly return volatility of Shanghai stock exchange 50 index (SSE50. Using FPCA to reduce dimension to a finite level, we extracted the most significant components of the data and some relevant statistical features of such related datasets. The calculated results show that regarding the samples as random functions is rational. Compared with the ordinary principle component analysis, FPCA can solve the problem of different dimensions in the samples. And FPCA is a convenient approach to extract the main variance factors.

  7. A Top Level Analysis of Training Management Functions.

    Science.gov (United States)

    Ackerson, Jack

    1995-01-01

    Discusses how to conduct a top-level analysis of training management functions to identify problems within a training system resulting from rapid growth, the acquisition of new departments, or mergers. The data gathering process and analyses are explained, training management functions and activities are described, and root causes and solutions…

  8. Functional Analysis and Treatment of Inappropriate Sexual Behavior.

    Science.gov (United States)

    Fyffe, Christie E.; Kahng, SungWoo; Fittro, Ellen; Russell, David

    2004-01-01

    The results of a functional analysis showed that inappropriate sexual behaviors exhibited by a 9-year-old boy who had been diagnosed with traumatic brain injury were maintained by positive reinforcement in the form of social attention. An intervention consisting of functional communication training and extinction resulted in reduced levels of…

  9. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions

    DEFF Research Database (Denmark)

    Pendle, Alison F; Clark, Gillian P; Boon, Reinier

    2005-01-01

    The eukaryotic nucleolus is involved in ribosome biogenesis and a wide range of other RNA metabolism and cellular functions. An important step in the functional analysis of the nucleolus is to determine the complement of proteins of this nuclear compartment. Here, we describe the first proteomic ...

  10. Emerging Themes in the Functional Analysis of Problem Behavior.

    Science.gov (United States)

    Carr, Edward G.

    1994-01-01

    The successful application of functional analysis to problem behavior suggests the need to examine: additional functional properties of behavior involving social avoidance, biological reinforcement, and respondent conditioning; the role of context (including social factors and biological factors); and the multidimensional character of assessment…

  11. Electromagnetic and seismoelectric sensitivity analysis using resolution functions

    NARCIS (Netherlands)

    Maas, P.J.; Grobbe, N.; Slob, E.C.; Mulder, W.A.

    2015-01-01

    For multi-parameter problems, such as the seismoelectric system, sensitivity analysis through resolution functions is a low-cost, fast method of determining whether measured fields are sensitive to certain subsurface parameters. We define a seismoelectric resolution function for the inversion of a

  12. Pine Savannah restoration monitoring –Tammany Holding Tract

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Monitor the response of pine flatwood/savannah to restoration and management actions including brush removal, prescribed burning and planting longleaf pine...

  13. The 2002 Rodeo-Chediski Wildfire's impacts on southwestern ponderosa pine ecosystems, hydrology, and fuels

    Science.gov (United States)

    Peter F. Ffolliott; Cody L. Stropki; Hui Chen; Daniel G. Neary

    2011-01-01

    The Rodeo-Chediski Wildfire burned nearly 462,600 acres in north-central Arizona in the summer of 2002. The wildfire damaged or destroyed ecosystem resources and disrupted the hydrologic functioning within the impacted ponderosa pine (Pinus ponderosa) forests in a largely mosaic pattern. Impacts of the wildfire on ecosystem resources, factors important to hydrologic...

  14. Developing resilient ponderosa pine forests with mechanical thinning and prescribed fire in central Oregon's pumice region

    Science.gov (United States)

    Matt D. Busse; P.H. Cochran; William E. Hopkins; William H. Johnson; Gregg M. Riegel; Gary O. Fiddler; Alice W. Ratcliff; Carol J. Shestak

    2009-01-01

    Thinning and prescribed burning are common management practices for reducing fuel buildup in ponderosa pine forests. However, it is not well understood if their combined use is required to lower wildfire risk and to help restore natural ecological function. We compared 16 treatment combinations of thinning, prescribed fire, and slash retention for two decades...

  15. FUNCTIONAL ANALYSIS OF THE WEBBING USED IN AUTO SEATBELTS

    Directory of Open Access Journals (Sweden)

    DRUG (LUCA Alexandra

    2016-05-01

    Full Text Available The reason this paper was made was to identify the functions with the highest importance factor of webbing used in auto seatbelts. For these functions to satisfy all the requirements of operating, functions resulted from analyzing the properties of the webbing. Depending on the importance of each function was developed an objective hierarchy of them, pursuing the imposed decisions technic. Using the Analysis and engineering value it was possible to do the functional analysis of the properties of webbing. By setting the functions value it was possible to obtain a series of decisions, specifying that a function corresponds to a single operating property. Following this analysis it was observed that the main characteristic of webbings is that they have a very good resistance to tensile stresses, characteristic imposed by the manner of operation during use. An important factor that was taken into account in analyzing the webbings was the fabric structure. The structure has a major impact on the function and use of webbings in the belt assembly, considering the fact that their primary role is to save the life of the user, in case of impact of a vehicle. Based on this study the following research is focused on the functional properties of the seatbelt, in order to design and manufacture seatbelts with appropriate exploitation properties.

  16. Influence of partial serotiny of Aleppo pine, Italian, and Arizona cypress on seed germination

    Directory of Open Access Journals (Sweden)

    Grbić Mihailo

    2006-01-01

    Full Text Available The usability of seeds for the production of seedlings, as well as the utilisation potential of seeds for natural regeneration was assessed by the comparative analysis of seed germination from the cones of different ages of three species with partial serotiny (P. halepensis Mill., Cupressus sempervirens L., Cupressus arizonica Greene. In cypress, serotiny is not so expressed as to be a reserve for extraordinary situations (fire. Fouryearold Aleppo pine cones should be collected for production purposes. Serotinous cones up to ten years old are efficient for natural regeneration of Aleppo pine forest after fire.

  17. Use of Analog Functional Analysis in Assessing the Function of Mealtime Behavior Problems.

    Science.gov (United States)

    Girolami, Peter A.; Scotti, Joseph R.

    2001-01-01

    This study applied the methodology of an analog experimental (functional) analysis of behavior to the specific interaction between parents and three children with mental retardation exhibiting food refusal and related mealtime problems. Analog results were highly consistent with other forms of functional assessment data, including interviews,…

  18. A Temporal Extension to Traditional Empirical Orthogonal Function Analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Hilger, Klaus Baggesen; Andersen, Ole Baltazar

    2002-01-01

    This paper describes the application of temporal maximum autocorrelation factor analysis to global monthly mean values of 1996-1997 sea surface temperature (SST) and sea surface height (SSH) data. This type of analysis can be considered as an extension of traditional empirical orthogonal function...

  19. Structural analysis and functional characteristics of greenhouses in ...

    African Journals Online (AJOL)

    USER

    2010-05-24

    May 24, 2010 ... This study was carried out to determine the structural analysis and functional characteristics of the greenhouses ..... Duncan test results for mean separation of calculated stretch ratios, ... and Organic Fertilizers and Possible Effects in the Greenhouses of ... Structural analysis of greenhouses: A case study in.

  20. Complex analysis a modern first course in function theory

    CERN Document Server

    Muir, Jerry R

    2015-01-01

    A thorough introduction to the theory of complex functions emphasizing the beauty, power, and counterintuitive nature of the subject Written with a reader-friendly approach, Complex Analysis: A Modern First Course in Function Theory features a self-contained, concise development of the fundamental principles of complex analysis. After laying groundwork on complex numbers and the calculus and geometric mapping properties of functions of a complex variable, the author uses power series as a unifying theme to define and study the many rich and occasionally surprising properties of analytic fun

  1. BME-based spatiotemporal analysis of damage to pine wood nematode Bursaphelenchus xylophilus in Zijin Mountain%基于贝叶斯最大熵模型的紫金山松材线虫危害程度时空分析

    Institute of Scientific and Technical Information of China (English)

    李明阳; 张晓利; 刘方; 陈溢南

    2012-01-01

    【Objective】 The objective of spatiotemporal prediction of damage from pine wood nematode Bursaphelenchus xylophilus at Zijin Mountain National Forest Park is to provide scientific basis to make plan to protect forest.【Method】 The observation data of 96 fixed points of pine wilt disease at scenic forest in Zijin Mountain National Forest Park from 2004 to 2008 were chosen as the main source of information,together with the related auxiliary information of six ecological environmental factors.Bayesian maximum entropy(BME) method was applied to do spatiotemporal analysis of damage to pine wood nematode.【Result】 From 2004 to 2008,the average number of dead pine trees at observation points of pine wilt disease in Zijin Mountain National Forest Park decreased from 29.96 to 8.17.From 2008 to 2012,the outbreak of pine wood nematode was alleviated in western park and controlled in central park,but still serious in the eastern park,resulting in lower connectivity between points with high number of dead trees.Spatial cluster of dead trees at observation points of pine wilt disease in 2012 indicates that the transportation inconvenient mountain region with large area of old and high volume pine trees will suffer more severely from pine wood nematode and more attention should be paid to prevention and control.【Conclusion】 With GIS-based BME method and a small amount of fixed-point observation data,spatiotemporal analysis can be conducted to predict damage from pine wood nematode,which can provide a scientific basis for prevention and control of invasion from major forest pests.%【目的】对紫金山国家森林公园松材线虫危害程度进行时空预测,旨在为森林病虫害防治规划的制定提供科学依据。【方法】以2004-2008年紫金山国家森林公园风景林96个松材线虫病疫点定点观测数据为主要信息源,与松材线虫危害程度相关的6个生态环境因子作为辅助信息源,采用GIS平台及贝叶斯最

  2. Characterization of pine nuts in the U.S. market, including those associated with "pine mouth", by GC-FID.

    Science.gov (United States)

    Fardin-Kia, Ali Reza; Handy, Sara M; Rader, Jeanne I

    2012-03-14

    Taste disturbances following consumption of pine nuts, referred to as "pine mouth", have been reported by consumers in the United States and Europe. Nuts of Pinus armandii have been associated with pine mouth, and a diagnostic index (DI) measuring the content of Δ5-unsaturated fatty acids relative to that of their fatty acid precursors has been proposed for identifying nuts from this species. A 100 m SLB-IL 111 GC column was used to improve fatty acid separations, and 45 pine nut samples were analyzed, including pine mouth-associated samples. This study examined the use of a DI for the identification of mixtures of pine nut species and showed the limitation of morphological characteristics for species identification. DI values for many commercial samples did not match those of known reference species, indicating that the majority of pine nuts collected in the U.S. market, including those associated with pine mouth, are mixtures of nuts from different Pinus species.

  3. Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes?

    Science.gov (United States)

    Iason, Glenn R; O'Reilly-Wapstra, Julianne M; Brewer, Mark J; Summers, Ron W; Moore, Ben D

    2011-05-12

    A central issue in our understanding of the evolution of the diversity of plant secondary metabolites (PSMs) is whether or not compounds are functional, conferring an advantage to the plant, or non-functional. We examine the hypothesis that the diversity of monoterpene PSMs within a plant species (Scots pine Pinus sylvestris) may be explained by different compounds acting as defences against high-impact herbivores operating at different life stages. We also hypothesize that pairwise coevolution, with uncorrelated interactions, is more likely to result in greater PSM diversity, than diffuse coevolution. We tested whether up to 13 different monoterpenes in Scots pine were inhibitory to herbivory by slugs (Arion ater), bank voles (Clethrionomys glareolus), red deer (Cervus elaphus) and capercaillie (Tetrao urogallus), each of which attack trees at a different life stage. Plants containing more α-pinene were avoided by both slugs and capercaillie, which may act as reinforcing selective agents for this dominant defensive compound. Herbivory by red deer and capercaillie were, respectively, weakly negatively associated with δ(3)-carene, and strongly negatively correlated with the minor compound β-ocimene. Three of the four herbivores are probably contributory selective agents on some of the terpenes, and thus maintain some, but by no means all, of the phytochemical diversity in the species. The correlated defensive function of α-pinene against slugs and capercaillie is consistent with diffuse coevolutionary processes.

  4. Linear functional analysis an application-oriented introduction

    CERN Document Server

    Alt, Hans Wilhelm

    2016-01-01

    This book gives an introduction to Linear Functional Analysis, a synthesis of algebra, topology, and analysis. In addition to the basic theory it explains operator theory, distributions, Sobolev spaces, and many other things. The text is self-contained and includes all proofs, as well as many exercises, most of them with solutions. Moreover, there are a number of appendices, for example on Lebesgue integration theory. A complete introduction to the subject, Linear Functional Analysis will be particularly useful to readers who want to quickly get to the key statements and who are interested in applications to differential equations.

  5. White pines, Ribes, and blister rust: integration and action

    Science.gov (United States)

    R. S. Hunt; B. W. Geils; K. E. Hummer

    2010-01-01

    The preceding articles in this series review the history, biology and management of white pine blister rust in North America, Europe and eastern Asia. In this integration, we connect and discuss seven recurring themes important for understanding and managing epidemics of Cronartium ribicola in the white pines (five-needle pines in subgenus Strobus). Information and...

  6. Blister rust control in the management of western white pine

    Science.gov (United States)

    Kenneth P. Davis; Virgil D. Moss

    1940-01-01

    The forest industry of the western white pine region depends on the production of white pine as a major species on about 2,670,000 acres of commercial forest land. Continued production of this species and maintenance of the forest industry at anything approaching its present level is impossible unless the white pine blister rust is controlled. Existing merchantable...

  7. White pines, blister rust, and management in the Southwest

    Science.gov (United States)

    D. A. Conklin; M Fairweather; D Ryerson; B Geils; D Vogler

    2009-01-01

    White pines in New Mexico and Arizona are threatened by the invasive disease white pine blister rust, Cronartium ribicola. Blister rust is already causing severe damage to a large population of southwestern white pine in the Sacramento Mountains of southern New Mexico. Recent detection in northern and western New Mexico suggests that a major expansion of the...

  8. Yield of a Choctawhatchee Sand Pine Plantation at Age 28

    Science.gov (United States)

    Russell M. Burns; R.H. Brendemuehl

    1969-01-01

    A little-known tree, Choctawhatchee sand pine (Pinus clausa [Chapm.] Vasey), seems well adapted to the infertile, droughty soils common to the sandhills of Florida which now produce little value. Published yield data based on plantation-grown Choctawhatchee sand pine are not available. One 28-year-old plantation of this race of sand pine, growing...

  9. Avian response to pine restoration at Peck Ranch Conservation Area

    Science.gov (United States)

    Richard Clawson; Carrie Steen; Kim Houf; Terry Thompson

    2007-01-01

    Midco Pine Flats is a 2,223-acre region of Peck Ranch Conservation Area (CA) that is classified as a pine-oak plains land type association. Extensive logging in the early 1900s removed most overstory shortleaf pine allowing oak to become the primary overstory component. In 2000, Missouri Department of Conservation staff initiated a pineoak woodland restoration project...

  10. 78 FR 52498 - White Pine-Nye Resource Advisory Committee

    Science.gov (United States)

    2013-08-23

    ... Forest Service White Pine-Nye Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The White Pine-Nye Resource Advisory Committee (RAC) will meet in Eureka, Nevada. The... Standard Time. All RAC meetings are subject to change or cancellation. For status of the White Pine-Nye...

  11. [Systemic allergic reaction after ingestion of pine nuts, Pinus pinea].

    Science.gov (United States)

    Nielsen, N H

    1990-11-26

    An in vivo open oral provocation with pine nuts (Pinus pinea) confirmed information about systemic reaction after ingestion of pine nuts. In vitro tests suggested a systemic IgE allergic reaction. Pine nuts are employed in sweets and cakes and, as in the present case, in green salads.

  12. Measuring medium-term sheet erosion in gullies from trees: A case study using dendrogeomorphological analysis of exposed pine roots in central Iberia

    Science.gov (United States)

    Bodoque, J. M.; Lucía, A.; Ballesteros, J. A.; Martín-Duque, J. F.; Rubiales, Juan M.; Genova, M.

    2011-11-01

    The assessment of gully erosion poses a great challenge because of the complexity and connectivity of the geomorphic processes involved. This study focuses on the quantification of sheet erosion rates in a set of slope gullies located on the northern piedmont of the Guadarrama Mountains (Spanish Central System). In order to delineate accurately the gully areas in which sheet erosion was predominant, the Hydrologic/Erosion Response Unit (HRU/ERU) approach was used and a dendrogeomorphological analysis of exposed tree roots was carried out to quantify sheet erosion rates in one selected HRU/ERU. Identification of the first year of exposure by erosion from anatomical criteria was therefore critical. The 29 samples taken were prepared for anatomical analysis and cross-dated. Anatomical analysis of the samples showed a reduction in the lumen area of earlywood tracheids following root exposure and also, in most cases, a slight increase in growth rings. Moreover, at the end of the ring, latewood tissue and visible annual borders were very clearly defined by several rows of thick-walled tracheids. A non-parametric test was used on the findings derived from this qualitative analysis to objectify determination of the first year of exposure. Estimates of sheet erosion were obtained by dividing the height of eroded soil by the number of years that each root was exposed. The mean value of soil erosion for the entire study site was then determined from statistical inference. Using this procedure, a range of sheet erosion rates between 6.2 and 8.8 mm y -1 (125.2 and 177.8 t ha -1 year -1) was obtained for the dominant HRU/ERU of these gullies in central Iberia. These estimates of eroded soil thickness were adjusted based on the recent finding that root anatomical changes occur prior to their exposure by erosion.

  13. [Comparative analysis of genetic variation in two groups of Crimean pine trees with different levels of tolerance to industrial pollutants in the environs of the city of Mariupol].

    Science.gov (United States)

    Korshikov, I I; Bychkov, S A

    2001-01-01

    The comparative analysis of genetic variability of two groups of young Pinus pallasiana D. Don. trees with different degree of tolerance to industrial pollution, defined in plantations of Mariupol and its environs, has been performed on the basis of polymorphism investigations in 20 isoenzyme loci controlling 9 enzyme systems. In these groups of plants with high and low quantity of needles on the growing sprouts differences in the levels of genetic variability, as to average criteria, have not been found.

  14. Comparing modelled and remotely sensed leaf area dynamics in an Aleppo pine semiarid forest

    Science.gov (United States)

    Pasquato, Marta; Medici, Chiara; Friend, Andrew D.; Francés, Félix

    2013-04-01

    Much of the Earth's terrestrial surface is subject to arid climatic water stress. In these regions, plant ecosystems are controlled by water availability, inducing a tight interconnection between the hydrological cycle and the vegetation dynamics. For this reason, and to fully reproduce water-controlled ecosystems' behaviour, it is essential to jointly model vegetation and the hydrological cycle. In this work, the performance of a parsimonious dynamic vegetation model, suitable for the inclusion in a conceptual ecohydrological model, is tested in a semi-arid Aleppo Pine forest area in the south-east of Spain. The model simulates gross primary production (GPP) as a function of absorbed photosynthetically active radiation (APAR) and the light use efficiency (LUE). Net primary production (NPP) is then calculated taking into account maintenance respiration. The modelling is focused particularly on simulating foliar biomass, which is obtained from NPP through an allocation equation based on the maximum LAI sustainable by the system, and considering turnover. An analysis of the information offered by MODIS EVI, NDVI, and LAI products was performed in order to investigate vegetation dynamics in the study site and to select the best indices to be used to evaluate the ecohydrological model's performance. EVI is reported in literature (Huete et al., 2002) to be sensitive to canopy structure, particularly to leaf area index (LAI). In accordance with the phenological cycle timing described for the Aleppo pine in similar climates (Muñoz et al., 2003), the EVI showed maximum values in spring and minimum values in winter. Similar results were found applying the aforementioned vegetation model to the study area. Contrasting simulated LAI with the EVI series, a correlation coefficient r = 0.57 was found. Concerning NDVI, its own definition links this index to the "greenness" of the target, so that it appears highly linked to chlorophyll content and vegetation condition, but only

  15. Functional analysis in the evaluation of four concepts of planters

    Directory of Open Access Journals (Sweden)

    Reis Ângelo Vieira dos

    2002-01-01

    Full Text Available The essential functions of a planter are to open the planting furrow, meter the seeds, deposit them in the furrow, cover them and compact the soil around them. The planter precision is affected, in some way, by each of those functions. Function analysis is a tool used in the conceptual phase of product design which allows an abstract formulation for the function of the technical system, thus making it very useful in product design and in the analysis of existing products. Therefore, the technique of function analysis makes it possible to identify, in the various concepts of planters sold in the Brazilian market, which function is not well implemented when considering precision planting of small grains, being this the main objective of this study. This study has made it possible to conclude, among other things, that in all concepts of planters analyzed, the sub-functions of metering seeds and that of depositing seeds in the soil were not satisfactorily implemented for the precision planting of small grains. This points out the need of searching for other concepts of planters or the adoption of different solution principles for these functions.

  16. Evolution of Conifer Diterpene Synthases: Diterpene Resin Acid Biosynthesis in Lodgepole Pine and Jack Pine Involves Monofunctional and Bifunctional Diterpene Synthases1[W][OA

    Science.gov (United States)

    Hall, Dawn E.; Zerbe, Philipp; Jancsik, Sharon; Quesada, Alfonso Lara; Dullat, Harpreet; Madilao, Lina L.; Yuen, Macaire; Bohlmann, Jörg

    2013-01-01

    Diterpene resin acids (DRAs) are major components of pine (Pinus spp.) oleoresin. They play critical roles in conifer defense against insects and pathogens and as a renewable resource for industrial bioproducts. The core structures of DRAs are formed in secondary (i.e. specialized) metabolism via cycloisomerization of geranylgeranyl diphosphate (GGPP) by diterpene synthases (diTPSs). Previously described gymnosperm diTPSs of DRA biosynthesis are bifunctional enzymes that catalyze the initial bicyclization of GGPP followed by rearrangement of a (+)-copalyl diphosphate intermediate at two discrete class II and class I active sites. In contrast, similar diterpenes of gibberellin primary (i.e. general) metabolism are produced by the consecutive activity of two monofunctional class II and class I diTPSs. Using high-throughput transcriptome sequencing, we discovered 11 diTPS from jack pine (Pinus banksiana) and lodgepole pine (Pinus contorta). Three of these were orthologous to known conifer bifunctional levopimaradiene/abietadiene synthases. Surprisingly, two sets of orthologous PbdiTPSs and PcdiTPSs were monofunctional class I enzymes that lacked functional class II active sites and converted (+)-copalyl diphosphate, but not GGPP, into isopimaradiene and pimaradiene as major products. Diterpene profiles and transcriptome sequences of lodgepole pine and jack pine are consistent with roles for these diTPSs in DRA biosynthesis. The monofunctional class I diTPSs of DRA biosynthesis form a new clade within the gymnosperm-specific TPS-d3 subfamily that evolved from bifunctional diTPS rather than monofunctional enzymes (TPS-c and TPS-e) of gibberellin metabolism. Homology modeling suggested alterations in the class I active site that may have contributed to their functional specialization relative to other conifer diTPSs. PMID:23370714

  17. Generalized functions, volume 4 applications of harmonic analysis

    CERN Document Server

    Gel′fand, I M; Vilenkin, N Ya

    2016-01-01

    The first systematic theory of generalized functions (also known as distributions) was created in the early 1950s, although some aspects were developed much earlier, most notably in the definition of the Green's function in mathematics and in the work of Paul Dirac on quantum electrodynamics in physics. The six-volume collection, Generalized Functions, written by I. M. Gel′fand and co-authors and published in Russian between 1958 and 1966, gives an introduction to generalized functions and presents various applications to analysis, PDE, stochastic processes, and representation theory. The main

  18. First record of the Kuwana pine mealybug Crisicoccus pini (Kuwana) in Italy: a new threat to Italian pine forests?

    Science.gov (United States)

    Boselli, Mauro; Pellizzari, Giuseppina

    2016-02-19

    The Asiatic Kuwana pine mealybug, Crisicoccus pini (Kuwana, 1902) (Hemiptera, Pseudococcidae), is reported in Italy for the first time. It was detected in September 2015 on maritime pine, Pinus pinaster, and stone pine, Pinus pinea, trees growing in the town of Cervia (Ravenna Province), Northern Italy. The mealybug has caused yellowing and decline of the pine trees. Pinus pinea is recorded here as a new host for C. pini.

  19. Impact of the invasion of pinewood nematode and the following different removal disturbance intensities on the plant diversity of Masson pine community

    Institute of Scientific and Technical Information of China (English)

    SHI Juan; LUO Youqing; SONG Jiying; YAN Xiaosu; JIANG Ping; WANG Yijiao

    2007-01-01

    Reported in this paper are our findings of the study on changes in species diversity of different Masson pine communities after the invasion of Bursaphelenchus xylophilus(Steiner and Buhren)Nickle and subsequent and different removal disturbance management approaches.Based on the results,the species diversity indices for the arbor layers of the different communities can be arranged in the following order(from high to low):1)broad-leaved stand after the removal of all infected pine trees in the pure pine stand in Fuyang;2)lightly infected Masson pine and Schima superba mixed stand in Fuyang;3)uninfected stand mixture of Masson pine and Castanopsis fargesii as a control;4)lightly infested pure Masson pine stand in Fuyang;5)Quercus variables stand formed following the selective removal of infected pine trees from a mixed Masson pine and Q.variables stand in Zhoushan Islands;6)pure young Masson pine stand formed following the removal of all infected pine trees from a pure Masson pine stand;7)pure Liquidambarformosana stand after the removal of infected pine trees from a pure pine stand in Zhoushan Islands;8)a mixed stand consisting of Pinus thunbergii and the Masson pine in Zhoushan Island;and 9)moderately infected Masson pine stand in Zhoushan Islands.All the three diversity indices(R0=richness,H'=Shan-non-Wiener index,and E=evenness)for the shrub layer did not show any significant differences among the various communities except for the pure pine stand in ZhoushanIsland,which had the lowest diversity.The three indices for the herb layer of the pure young Masson pine,Q.variables stand,and L.formosana stand were higher than that of other stands.The integrated analysis showed that the Masson pine forest in different geographical situations and extent of damage had distinct disparity,just as in different disturbance degrees and restoring manners.We created the"index of disturbing intensity of stump and fallen woods"(IDISFW)to represent thedegree of disturbance of tree

  20. Solar Decathlon 2015 - Indigo Pine

    Energy Technology Data Exchange (ETDEWEB)

    Blouin, Vincent [Clemson Univ., SC (United States)

    2016-05-30

    The Solar Decathlon competition challenges students across the country to design and build a net-zero, market ready solar powered home. The bi-annual competition consists of ten contests that seek to balance the home on a scale of innovation. The ten contests were selected by to organizers to address all aspects of housing, including architecture, market appeal, engineering, communication, affordability, comfort, appliances, home life, commuting, and energy balance. Along with the criteria associated with the contests, the competition includes several design constraints that mirror those found in practical housing applications: including (but certainly not limited to) lot lines, building height, and ADA accessibility. The Solar Decathlon 2015 was held at the Orange Country Great Park in Irvine, CA. The 2015 competition was Clemson University’s first entry into the Solar Decathlon and was a notable milestone in the continued development of a home, called Indigo Pine. From the beginning, the team reconsidered the notion of sustainability as related to both the design of a home and the competition itself. The designing and building process for the home reflects a process which seamlessly moves between thinking and making to develop a comprehensive design with a method and innovations that challenge the conventions of residential construction. This report is a summary of the activities of the Clemson University team during the two-year duration of the project leading to the participation in the 2015 Solar Decathlon competition in Irvine California.

  1. Paternity and gene dispersal in limber pine (Pinus flexilis James).

    Science.gov (United States)

    Schuster, W S; Mitton, J B

    2000-03-01

    This study provides empirical information on intrapopulation gene dispersal via pollen, the size of genetic 'neighbourhoods', and interpopulation gene flow in a long-lived conifer, limber pine (Pinus flexilis). We used allozyme loci for a paternity analysis of 518 seeds produced in an isolated population of limber pine located in north-eastern Colorado, U.S.A., separated by 2 km from the nearest conspecific trees and nearly 100 km from populations in the Rocky Mountains. We also used indirect techniques (FST analyses) to estimate gene flow rates among subdivisions of the study population and among five widely separated populations. Within the main study population limber pine exhibited a polymorphism level of 50%, observed heterozygosity of 0.159, and 2.36 alleles per polymorphic locus. Mountain populations were slightly more variable. The main study population showed significant differentiation in allozymes among neighbouring subpopulations. The mean FST was 0.031 and the gene flow rate among subpopulations was estimated as 7.8 migrants per generation. Among widely separated populations the mean FST was 0.035 and the gene flow rate was estimated as 6.9 migrants per generation. The paternity analysis indicated a best estimate of 6.5% pollen immigration (minimum 1.1%) from populations 2 km to 100+ km away. For 4% of the seeds examined, paternity could be ascribed to a single tree in the study population. Fractional paternity and likelihood methods were used to estimate pollen dispersal distances for the remainder of the seeds. Mean pollen dispersal distance was estimated at 140 m using the fractional method, similar to results from the other techniques. This compares with a mean distance of 172 m between potential mates. These results suggest near-panmictic pollen dispersal over this population, which covers about 15 ha. The observed allozyme differences and surprisingly low estimates of among-subpopulation gene flow are ascribed to a probable restriction of gene

  2. Airborne chloronaphthalenes in Scots pine needles of Poland

    Energy Technology Data Exchange (ETDEWEB)

    Orlikowska, A.; Hanari, N.; Wyrzykowska, B.; Bochentin, I.; Horii, Y.; Yamashita, N.; Falandysz, J. [University of Gdansk, Gdansk (Poland)

    2009-05-15

    The amounts, profiles and origin of CNs (from triCNs to octaCN) sequestered in Scots pine needles collected from 25 spatially distant sites in Poland have been studied based on congener-specific data obtained after several clean-up and fractionation steps and final HRGC/HRMS separation and determination. The absolute concentrations of CNs varied largely from site to site, i.e., by 15-fold. The sum of trito octaCN concentration at fifteen of the least contaminated sites ranged from 70 to 280 pg g{sup -1} ww, and at further eight sites were from 340 to 540 pg g{sup -1} ww, while at two the most contaminated were 1000 and 1100 pg g{sup -1} ww. There were some substantial similarities but also variations in triCN to octaCN homologue group profiles depending on the site. Among triCNs the isomers such as 1,2,4-/1,3,7-/1,4,6-triCNs (nos. 14/21/24) dominate in Scots pine needles. For majority of the sites examined 1,2,4-/1,3,7-/1,4,6-triCNs are also the major contributors to the bulk of CNs determined. Among tetraCNs isomer 1,2,5,8-tetraCN (no. 38) was dominant contributor at eighteen sites, while 1,2,4,6-/1,2,4,7-/1,2,5,7-tetraCN (nos. 33/34/37) at seven other sites. In the case of pentaCNs isomer 1,2,4,5,8-pentaCN (no. 59), was dominant contributor alone. Octachloronaphthalene frequently contributed substantially to the bulk of CNs. The Cluster Analysis and Principal Component Analysis did indicate that the compositional profiles of CNs found in Scots pine needles resemble somehow these found in the bottom ashes after coke and coal burning as well as of Halowax 1000 and 1099 formulations.

  3. Site classification of ponderosa pine stands under stocking control in California

    Science.gov (United States)

    Robert F. Powers; William W. Oliver

    1978-01-01

    Existing systems for estimating site index of ponderosa pine (Pinus ponderosa Laws.) do not apply well to California stands where stocking is controlled. A more suitable system has been developed using trends in natural height growth, derived from stem analysis of dominant trees in California. This site index system produces polymorphic patterns of...

  4. [Genetic control of the isoenzymes in Cembra pine (Pinus cembra L.) in the Ukrainian Carpathian Mountains].

    Science.gov (United States)

    Pirko, Ia V; Korshikov, I I

    2001-01-01

    Genetic control of GOT, GDH, DIA, MDH, SOD, FDH, ADH, ACP, and LAP enzymes was studied in the seed megagametophytes of cembra pine (Pinus cembra L.) from the natural population of the Ukrainian Carpa-thian mountains. Efficient electrophoretic separation was obtained for 21 loci products. The analysis of allele segregation in heterozygous trees confirms monogenic inheritance of the revealed variants.

  5. The water quality and quantity effects of biofuel operations in pine plantations of the southeastern USA

    Science.gov (United States)

    J. Nettles; M. Youssef; J. Cacho; J. Grace; Z. Leggett; E. Sucre

    2011-01-01

    Working alongside operational trials, a comprehensive research programme was developed to evaluate sustainability, life-cycle analysis, soil productivity, wildlife, and water resource impacts. The hydrology field studies consist of three sets of forested watersheds, each with mid-rotation pine reference, switchgrass (Panicum virgatum) interplanted, typical...

  6. White pine blister rust resistance of 12 western white pine families at three field sites in the Pacific Northwest

    Science.gov (United States)

    Richard A. Sniezko; Robert Danchok; Jim Hamlin; Angelia Kegley; Sally Long; James Mayo

    2012-01-01

    Western white pine (Pinus monticola Douglas ex D. Don) is highly susceptible to the non-native, invasive pathogen Cronartium ribicola, the causative agent of white pine blister rust. The susceptibility of western white pine to blister rust has limited its use in restoration and reforestation throughout much of western North...

  7. Status of white pine blister rust and seed collections in california's high-elevation white pine species

    Science.gov (United States)

    J. Dunlap

    2011-01-01

    White pine blister rust (caused by the non-native pathogen Cronartium ribicola) reached northern California about 80 years ago. Over the years its spread southward had been primarily recorded on sugar pine. However, observations on its occurrence had also been reported in several of the higher elevation five-needled white pine species in California. Since the late...

  8. Transfer function analysis of ultrasonic time-intensity measurements.

    Science.gov (United States)

    Li, Pai-Chi; Yang, Mei-Ju

    2003-10-01

    Time-intensity measurements of ultrasonic-contrast microbubbles based on the dilution theory have been used to assist blood flow estimation. The compartment model has been employed to describe the dilution process. Under the linear and time-invariant assumption, the time-intensity curve measured at the output of a compartment (i.e., blood mixing chamber) is the convolution of the input time-intensity curve with the compartment's transfer function. Thus, transfer function analysis is possible using deconvolution when the temporal variations in both the input and the output intensities are available. Note that the linear and time-invariant assumption requires a constant flow rate because, with flow pulsation, the flow rate changes with time and the mixing process becomes time varying. Thus, the purpose of this paper was to study the effects of flow pulsation on time-intensity measurements. In addition, a deconvolution technique based on a recursive least squares approach is used for transfer function analysis. Both simulations and experiments were performed; the results from which indicate that the pulsation generally does not affect the validity of time-intensity-based flow estimation. The proposed deconvolution technique is also effective for both constant and pulsatile flows; thus, permitting transfer function analysis in various flow conditions. One potential application of this transfer function analysis is to remove the effects of a noninstantaneous input function. The results from this paper lead to future work in brain-perfusion estimation based on extracranial time-intensity measurements.

  9. Evolutionary fire ecology: lessons learned from pines.

    Science.gov (United States)

    Pausas, Juli G

    2015-05-01

    Macroevolutionary studies of the genus Pinus provide the oldest current evidence of fire as an evolutionary pressure on plants and date back to ca. 125 million years ago (Ma). Microevolutionary studies show that fire traits are variable within and among populations, especially among those subject to different fire regimes. In addition, there is increasing evidence of an inherited genetic basis to variability in fire traits. Added together, pines provide compelling evidence that fire can exert an evolutionary pressure on plants and, thus, shape biodiversity. In addition, evolutionary fire ecology is providing insights to improve the management of pine forests under changing conditions. The lessons learned from pines may guide research on the evolutionary ecology of other taxa.

  10. [The pine processionary caterpillar Thaumetopoea pityocampa].

    Science.gov (United States)

    Solt, Ido; Mendel, Zvi

    2002-09-01

    The pine processionary caterpillar Thaumetopoea pityocampa (Lepidoptera: Notodontidae) is considered to be a serious pest of medical importance. The hair on the dorsum of the last instar larvae of the moth may cause urticarial reactions (erucism) as well as eye problems and temporary blindness. In Israel, the pest occurs in all pine plantations as well as on ornamental pine trees in urban areas. The biology, ecology and management of the moth population are discussed as well as the mechanism of action of the urticarial hairs and their medical significance. Awareness of the life cycle and ecology of the pest may reduce the contact of the population with the urticarial hairs and prevent the morbidity caused by it.

  11. Are we narrowing genetic variability in seed orchards? An attempt to answer, based on the analysis of microsatellite DNA of grafts growing in Scots pine (Pinus sylvestris L. seed orchard in the Forest District Susz

    Directory of Open Access Journals (Sweden)

    Przybylski Paweł

    2015-09-01

    Full Text Available Scots pine (Pinus sylvestris L. is the most common species in Poland’s forest stands. The mode of pine stands renovation requires that silviculture practitioners have continuous access to seed banks. Orchard-grown seeds are predicted to constitute an increasingly larger part of the average demand for pine seeds in Poland. Seed orchards, due to a limited number of maternal trees as well as the irregularity of their blooming and pollination, enhance the risk of genetic diversity reduction in planted forest stands. This is of particular importance in the context of dynamic climate change. Markers based on microsatellite DNA fragments are effective tools for monitoring genetic variability. In the present study, three different microsatellite DNA fragments were used: SPAC 12.5, SPAG 7.14 and SPAC 11.4. The main objective of this research was to study genetic variability in one of the biggest seed orchards in Poland, located in the Forest District Susz. The obtained results indicated heterozygosity loss within the orchard, proving the existence of specimen selection effects on genetic variability. Hence, it seems quite important to take account of molecular genetic variability of maternal trees in future breeding strategies.

  12. Optimization onultrasonic-assisted extraction technology of flavonoids from pine nut shell with response surface analysis%松籽壳总黄酮超声提取工艺响应面优化

    Institute of Scientific and Technical Information of China (English)

    董周永; 任辉; 周亚军

    2011-01-01

    Ultrasonic assisted extraction was applied to extract fla-vonoids from pine nut shell. By means of Box-Behnken design with four factors (ultrasonic power, ethanol concentration, solid-liquid ratio and extraction time) as influence factors, the optimal extraction technology was performed. The results indicated that the optimized ultrasonic-assisted extraction conditions of flavonoids from pine nut shell were obtained as follows: ultrasonic power 250 W, ethanol concentration 50% , solid-liquid ratio 1 : 25, extraction time 31 min. Under the above mentioned conditions, the yield of flavonoids from pine nut shell was 15. 37 mg/g.%为研究松籽壳总黄酮超声提取工艺,以超声波功率、乙醇体积分数、料液比、提取时间为考察因素,采用Box-Behnken试验设计进行工艺参数优化.结果表明,松籽壳总黄酮的最优提取工艺条件:超声波功率250 W、乙醇体积分数50%、料液比1:25(m∶V)、提取时间31 min.该条件下,松籽壳总黄酮得率为15.37 mg/g.

  13. Natural selection on functional modules, a genome-wide analysis.

    Science.gov (United States)

    Serra, François; Arbiza, Leonardo; Dopazo, Joaquín; Dopazo, Hernán

    2011-03-01

    Classically, the functional consequences of natural selection over genomes have been analyzed as the compound effects of individual genes. The current paradigm for large-scale analysis of adaptation is based on the observed significant deviations of rates of individual genes from neutral evolutionary expectation. This approach, which assumed independence among genes, has not been able to identify biological functions significantly enriched in positively selected genes in individual species. Alternatively, pooling related species has enhanced the search for signatures of selection. However, grouping signatures does not allow testing for adaptive differences between species. Here we introduce the Gene-Set Selection Analysis (GSSA), a new genome-wide approach to test for evidences of natural selection on functional modules. GSSA is able to detect lineage specific evolutionary rate changes in a notable number of functional modules. For example, in nine mammal and Drosophilae genomes GSSA identifies hundreds of functional modules with significant associations to high and low rates of evolution. Many of the detected functional modules with high evolutionary rates have been previously identified as biological functions under positive selection. Notably, GSSA identifies conserved functional modules with many positively selected genes, which questions whether they are exclusively selected for fitting genomes to environmental changes. Our results agree with previous studies suggesting that adaptation requires positive selection, but not every mutation under positive selection contributes to the adaptive dynamical process of the evolution of species.

  14. Natural selection on functional modules, a genome-wide analysis.

    Directory of Open Access Journals (Sweden)

    François Serra

    2011-03-01

    Full Text Available Classically, the functional consequences of natural selection over genomes have been analyzed as the compound effects of individual genes. The current paradigm for large-scale analysis of adaptation is based on the observed significant deviations of rates of individual genes from neutral evolutionary expectation. This approach, which assumed independence among genes, has not been able to identify biological functions significantly enriched in positively selected genes in individual species. Alternatively, pooling related species has enhanced the search for signatures of selection. However, grouping signatures does not allow testing for adaptive differences between species. Here we introduce the Gene-Set Selection Analysis (GSSA, a new genome-wide approach to test for evidences of natural selection on functional modules. GSSA is able to detect lineage specific evolutionary rate changes in a notable number of functional modules. For example, in nine mammal and Drosophilae genomes GSSA identifies hundreds of functional modules with significant associations to high and low rates of evolution. Many of the detected functional modules with high evolutionary rates have been previously identified as biological functions under positive selection. Notably, GSSA identifies conserved functional modules with many positively selected genes, which questions whether they are exclusively selected for fitting genomes to environmental changes. Our results agree with previous studies suggesting that adaptation requires positive selection, but not every mutation under positive selection contributes to the adaptive dynamical process of the evolution of species.

  15. Harvesting and wood transport planning with SNAP III program (Scheduling and Network Analysis Program in a pine plantation in Southeast Brazil

    Directory of Open Access Journals (Sweden)

    Lopes Eduardo da Silva

    2003-01-01

    Full Text Available The objective of this study was to verify the potential of SNAP III (Scheduling and Network Analysis Program as a support tool for harvesting and wood transport planning in Brazil harvesting subsystem definition and establishment of a compatible route were assessed. Initially, machine operational and production costs were determined in seven subsystems for the study area, and quality indexes, construction and maintenance costs of forest roads were obtained and used as SNAP III program input data. The results showed, that three categories of forest road occurrence were observed in the study area: main, secondary and tertiary which, based on quality index, allowed a medium vehicle speed of about 41, 30 and 24 km/hours and a construction cost of about US$ 5,084.30, US$ 2,275.28 and US$ 1,650.00/km, respectively. The SNAP III program used as a support tool for the planning, was found to have a high potential tool in the harvesting and wood transport planning. The program was capable of defining efficiently, the harvesting subsystem on technical and economical basis, the best wood transport route and the forest road to be used in each period of the horizon planning.

  16. Multidisciplinary Analysis of Cyclophilin A Function in Human Breast Cancer

    Science.gov (United States)

    2010-03-01

    diagram of synthetic antibody production, which involves target protein immobilization, phase display library screening , and structural and functional...proteins, phase display library screening , and functional analysis of selected antigen-binding fragments (FABs) (Figure 4A). In brief, recombinant his...display library screening results in the generation of total 18 CypA- specific FABs including CsA sensitive (#1-11) and non CsA-sensitive (#12-18). A free

  17. The Stomatognathic Function Analysis of Skeletal Abnormalities and TMJ Disorders

    OpenAIRE

    1991-01-01

    Recently, stomatognathic function analysis has been recognized as essential to diagnosis and treatment planning, especially in patients with dento-skeletal discrepancies and TMJ disorders. Functional malocclusion should be carefully judged in diagnosis of pre-surgical orthodontic treatment and TMJ disorders. Also, the estimation of the EMG power and jaw movement pathway changes before and after surgery are very effective in estimating the occlusal stability and expectations of post-surgical r...

  18. A Functional Analysis on the Translations Of Deng Guanquelou

    Institute of Scientific and Technical Information of China (English)

    LI Xiao-ting

    2016-01-01

    Systemic functional linguistics is correlated with the translation study for the theory can be applied to analyze and eval-uate the translations. The poem Deng Guanquelou and its translated versions can be approached and compared within the Halli-dayan framework in so far as the translation processes and details can be better comprehended and described. The applicability and operability of functional grammar can be validated by virtue of the analysis of the translations.

  19. Multiresolution Analysis by Infinitely Differentiable Compactly Supported Functions

    Science.gov (United States)

    1992-09-01

    Z 2. Wavelet decompositions The up function provides an interesting example of wavelet decompositions via multiresolution. A general discussion of...Math. Surveys 45:1 (1990), 87-120. [I] (;. Strang and G. Fix, A Fourier analysis of the finite element variational method. C.I.M.F. I 1 Ciclo 1971, in Constructi’c Aspects of Functional Analyszs ed. G. Geymonat 1973, 793-840. 10

  20. Assessing the utility of a demand assessment for functional analysis.

    Science.gov (United States)

    Roscoe, Eileen M; Rooker, Griffin W; Pence, Sacha T; Longworth, Lynlea J

    2009-01-01

    We evaluated the utility of an assessment for identifying tasks for the functional analysis demand condition with 4 individuals who had been diagnosed with autism. During the demand assessment, a therapist presented a variety of tasks, and observers measured problem behavior and compliance to identify demands associated with low levels of compliance or high levels of problem behavior (low-probability demands) and demands associated with high levels of compliance or low levels of problem behavior (high-probability demands). Results showed that clearer functional analysis outcomes were obtained for 3 of the 4 participants when low-probability rather than high-probability demands were used.

  1. Text Analysis: A Functional Linguistic Approach of News Introduction

    Institute of Scientific and Technical Information of China (English)

    刘锦凤

    2009-01-01

    The past several decades have witnessed a phenomenal growth in interest in text analysis, in which different kinds of approaches have been studied and applied in this field. This paper aims at analyzing the introduction of a cho-sen CNN News from a functional linguis.tic approach, which is mainly realized through cohesive means and textual infor-mation. The study shows that in written text, well-organized semantic cohesive means and textual information are of great significance for readers to follow the movement of an idea from one sentence to another. Therefore, functional approach plays a momentous role in the analysis of a text.

  2. An introduction with medical applications to functional data analysis

    DEFF Research Database (Denmark)

    Sørensen, Helle; Goldsmith, Jeff; Sangalli, Laura M

    2013-01-01

    Functional data are data that can be represented by suitable functions, such as curves (potentially multi-dimensional) or surfaces. This paper gives an introduction to some basic but important techniques for the analysis of such data, and we apply the techniques to two datasets from biomedicine....... One dataset is about white matter structures in the brain in multiple sclerosis patients; the other dataset is about three-dimensional vascular geometries collected for the study of cerebral aneurysms. The techniques described are smoothing, alignment, principal component analysis, and regression....

  3. Generating function approach to reliability analysis of structural systems

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The generating function approach is an important tool for performance assessment in multi-state systems. Aiming at strength reliability analysis of structural systems, generating function approach is introduced and developed. Static reliability models of statically determinate, indeterminate systems and fatigue reliability models are built by constructing special generating functions, which are used to describe probability distributions of strength (resistance), stress (load) and fatigue life, by defining composite operators of generating functions and performance structure functions thereof. When composition operators are executed, computational costs can be reduced by a big margin by means of collecting like terms. The results of theoretical analysis and numerical simulation show that the generating function approach can be widely used for probability modeling of large complex systems with hierarchical structures due to the unified form, compact expression, computer program realizability and high universality. Because the new method considers twin loads giving rise to component failure dependency, it can provide a theoretical reference and act as a powerful tool for static, dynamic reliability analysis in civil engineering structures and mechanical equipment systems with multi-mode damage coupling.

  4. Global degradation kinetics of pine needles in air

    Energy Technology Data Exchange (ETDEWEB)

    Safi, M.J.; Mishra, I.M.; Prasad, B. [Department of Chemical Engineering, Indian Institute of Technology, Roorkee 247 667 (India)

    2004-03-23

    Pine needles are available in large quantities in the hilly region of Himalayas in India. Pine needles have good energy potential for exploitation through pyrolysis and gasification. This paper deals with the thermal degradation characteristics of pine needles and its kinetics. Thermal degradation analysis has been done by using a thermogravimetric analyzer from room temperature to 900C in air atmosphere at different heating rates, viz. 5, 10, 15, 25 and 30Kmin{sup -1}. The TGA, DTG and DTA curves exhibited four distinct degradation zones. However, at the low heating rate of 5Kmin{sup -1}, only three degradation zones were found. The second, third and fourth zones had higher values of activation energy than the first zone. The kinetic parameters were determined by using several methods proposed in the literature assuming single step, irreversible reaction for a particular zone. Agrawal and Sivasubramanian [AIChE J. 33 (1987) 6] method was found to be most consistent. For the total degradation zone the orders of reaction were found in the range of 0.00-2.50 by using Agrawal and Sivasubramanian [AIChE J. 33 (1987) 6] approximation, the activation energy in the range of 34.60-85.34kJmol{sup -1} and the preexponential factor in the range of 3.29x10{sup 4} to 5.98x10{sup 6}mg{sup 1-n}min{sup -1}. The relative simplicity of the model gives it the potential for applications in the design of large scale biomass-pyrolysis facility in remote areas.

  5. Workshop proceedings: research and management in whitebark pine ecosystems

    Science.gov (United States)

    Kendall, Katherine C.; Coen, Brenda

    1994-01-01

    The purpose of this workshop is to exchange information on on-going and soon-to-be-initiated whitebark pine research and management projects. By doing so we hope to encourage future work on this valuable species. We also hope to promote the use of consistent methods for evaluation and investigation of whitebark pine, and to provide avenues of collaboration. Speakers will present information on a variety of topics related to whitebark pine management and research. Featured presentation topics include anthropomorphic utilization of whitepark pine forests, whitebark pine natural regeneration, blister rust and the decline of whitebark pine, blister rust resistance studies, ecological mapping of the species, restoration and management projects, and survey/monitoring techniques. Information gained from these presentations may hopefully be used in the planning of future projects for the conservation of whitebark pine.

  6. [Effect of pine plantations on soil arthropods in a high Andean forest].

    Science.gov (United States)

    León-Gamboa, Alba Lucía; Ramos, Carolina; García, Mary Ruth

    2010-09-01

    One of the most common problems in the Colombian mountains has been the replacement of native vegetation by pine plantations. Soil arthropods are a fundamental component of forest ecosystem, since they participate in the organic matter fragmentation, previous to decomposition. This role is more valuable in high altitude environments, where low temperatures limit the dynamics of biological processes, where the effects of pine plantations on soil arthropods are still not well-known. In a remnant of high-andean forest (Neusa - Colombia) and a pine plantation of about 50 years-old, it was evaluated the composition, richness and abundance of arthropods at surface (S), organic horizon (O) and mineral horizon (A) of soil, to establish the differences associated to the soil use transformation. It was used "Pitfall" sampling to register the movement of the epigeous fauna, and extraction by funnel Berlese for determining the fauna density from O and A horizons. The Shannon and Simpson indexes estimated the diversity at different places and horizons, and the trophic structure of the community was evaluated. Overall, there were collected 38 306 individuals from forest and 17 386 individuals from pine plantation, mainly distributed in Collembola (42.4%), Acari (27%), Diptera (17.6%) and Coleoptera (4.6%). The most important differences were given in the surface, where the mobilization in forest (86 individuals/day) almost triplicates the one in pine plantation (33 individuals/day). The differences in composition were given in Collembola, Araneae, Hemiptera, Homoptera and Hymenoptera. The dynamics of richness and abundance along the year had significant high values in the native forest than in the pine plantation. The general trophic structure was dominated by saprophagous (75%), followed by predators (14%) and phytophagous (9%), but in two layers of the pine plantation soil (S and O) this structural pattern was not given. Based on the results, it was concluded that pine

  7. Functional Parallel Factor Analysis for Functions of One- and Two-dimensional Arguments.

    Science.gov (United States)

    Choi, Ji Yeh; Hwang, Heungsun; Timmerman, Marieke E

    2017-02-14

    Parallel factor analysis (PARAFAC) is a useful multivariate method for decomposing three-way data that consist of three different types of entities simultaneously. This method estimates trilinear components, each of which is a low-dimensional representation of a set of entities, often called a mode, to explain the maximum variance of the data. Functional PARAFAC permits the entities in different modes to be smooth functions or curves, varying over a continuum, rather than a collection of unconnected responses. The existing functional PARAFAC methods handle functions of a one-dimensional argument (e.g., time) only. In this paper, we propose a new extension of functional PARAFAC for handling three-way data whose responses are sequenced along both a two-dimensional domain (e.g., a plane with x- and y-axis coordinates) and a one-dimensional argument. Technically, the proposed method combines PARAFAC with basis function expansion approximations, using a set of piecewise quadratic finite element basis functions for estimating two-dimensional smooth functions and a set of one-dimensional basis functions for estimating one-dimensional smooth functions. In a simulation study, the proposed method appeared to outperform the conventional PARAFAC. We apply the method to EEG data to demonstrate its empirical usefulness.

  8. Mountain pine beetle attack associated with low levels of 4-allylanisole in ponderosa pine.

    Science.gov (United States)

    Emerick, Jay J; Snyder, Aaron I; Bower, Nathan W; Snyder, Marc A

    2008-08-01

    Mountain pine beetle (Dendroctonus ponderosae) is the most important insect pest in southern Rocky Mountain ponderosa pine (Pinus ponderosa) forests. Tree mortality is hastened by the various fungal pathogens that are symbiotic with the beetles. The phenylpropanoid 4-allylanisole is an antifungal and semiochemical for some pine beetle species. We analyzed 4-allylanisole and monoterpene profiles in the xylem oleoresin from a total of 107 trees at six sites from two chemotypes of ponderosa pine found in Colorado and New Mexico using gas chromatography-mass spectroscopy (GC-MS). Although monoterpene profiles were essentially the same in attacked and nonattacked trees, significantly lower levels of 4-allylanisole were found in attacked trees compared with trees that showed no evidence of attack for both chemotypes.

  9. Bending analysis of a functionally graded piezoelectric cantilever beam

    Institute of Scientific and Technical Information of China (English)

    YU Tao; ZHONG Zheng

    2007-01-01

    A new analysis based on Airy stress function method is presented for a functionally graded piezoelectric material cantilever beam.Assuming that the mechanical and electric properties of the material have the same variations along the thickness direction,a two-dimensional plane elasticity solution is obtained for the coupling electroelastic fields of the beam under different loadings.This solution will be useful in analyzing FGPM beam with arbitrary variations of material properties.The influences of the functionally graded material properties on the structural response of the beam subjected to different loads are also studied through numerical examples.

  10. Bending analysis of a functionally graded piezoelectric cantilever beam

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A new analysis based on Airy stress function method is presented for a functionally graded piezoelectric material cantilever beam. Assuming that the mechanical and electric properties of the material have the same variations along the thickness direction, a two-dimensional plane elasticity solution is obtained for the coupling electroelastic fields of the beam under different loadings. This solution will be useful in analyzing FGPM beam with arbitrary variations of material properties. The influences of the functionally graded material properties on the structural response of the beam subjected to different loads are also studied through numerical examples.

  11. Current peptidomics: applications, purification, identification, quantification, and functional analysis.

    Science.gov (United States)

    Dallas, David C; Guerrero, Andres; Parker, Evan A; Robinson, Randall C; Gan, Junai; German, J Bruce; Barile, Daniela; Lebrilla, Carlito B

    2015-03-01

    Peptidomics is an emerging field branching from proteomics that targets endogenously produced protein fragments. Endogenous peptides are often functional within the body-and can be both beneficial and detrimental. This review covers the use of peptidomics in understanding digestion, and identifying functional peptides and biomarkers. Various techniques for peptide and glycopeptide extraction, both at analytical and preparative scales, and available options for peptide detection with MS are discussed. Current algorithms for peptide sequence determination, and both analytical and computational techniques for quantification are compared. Techniques for statistical analysis, sequence mapping, enzyme prediction, and peptide function, and structure prediction are explored.

  12. A Functional Complexity Framework for the Analysis of Telecommunication Networks

    CERN Document Server

    Dzaferagic, Merim; Macaluso, Irene; Marchetti, Nicola

    2016-01-01

    The rapid evolution of network services demands new paradigms for studying and designing networks. In order to understand the underlying mechanisms that provide network functions, we propose a framework which enables the functional analysis of telecommunication networks. This framework allows us to isolate and analyse a network function as a complex system. We propose functional topologies to visualise the relationships between system entities and enable the systematic study of interactions between them. We also define a complexity metric $C_F$ (functional complexity) which quantifies the variety of structural patterns and roles of nodes in the topology. This complexity metric provides a wholly new approach to study the operation of telecommunication networks. We study the relationship between $C_F$ and different graph structures by analysing graph theory metrics in order to recognize complex organisations. $C_F$ is equal to zero for both a full mesh topology and a disconnected topology. We show that complexi...

  13. Four Layered Approach to Non-Functional Requirements Analysis

    CERN Document Server

    Rao, A Ananda

    2012-01-01

    Identification of non-functional requirements is important for successful development and deployment of the software product. The acceptance of the software product by the customer depends on the non-functional requirements which are incorporated in the software. For this, we need to identify all the non-functional requirements required by all stakeholders. In the literature not many approaches are available for this purpose. Hence, we have proposed a four layered analysis approach for identification of non-functional requirements. The proposed layered approach has many advantages over non-layered approach. As part of this approach some rules are also proposed to be used in each layer. The approach is applied successfully on two case studies. The identified non-functional requirements are validated using a check list and in addition the completeness of the identified non-requirements is computed using a metric.

  14. Fractals and spectra related to fourier analysis and function spaces

    CERN Document Server

    Triebel, Hans

    1997-01-01

    Fractals and Spectra Hans Triebel This book deals with the symbiotic relationship between the theory of function spaces, fractal geometry, and spectral theory of (fractal) pseudodifferential operators as it has emerged quite recently. Atomic and quarkonial (subatomic) decompositions in scalar and vector valued function spaces on the euclidean n-space pave the way to study properties (compact embeddings, entropy numbers) of function spaces on and of fractals. On this basis, distributions of eigenvalues of fractal (pseudo)differential operators are investigated. Diverse versions of fractal drums are played. The book is directed to mathematicians interested in functional analysis, the theory of function spaces, fractal geometry, partial and pseudodifferential operators, and, in particular, in how these domains are interrelated. ------ It is worth mentioning that there is virtually no literature on this topic and hence the most of the presented material is published here the first time. - Zentralblatt MATH (…) ...

  15. Host Preference by Monochamus alternatus (Hope) during Maturation Feeding on Pine Species and Masson Pine Provenances

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Host preferences pine of the sawyer beetle, Monochamus alternates (Hope), during maturation feeding on 8 conifer trees and 40 masson pine provenances, were investigated using 3 types of laboratory bioassay of consistent feeding preference, feeding area and visitation frequency. M. alternatus adults have the highest frequency of feeding and prefer to feed on the branches of P. massoniana and P. densiflora and had significant host selectivity on 8 conifer trees in the area of Nanjing. The adult feeding vi...

  16. Air pollution damage to Austrian pine in New Jersey

    Energy Technology Data Exchange (ETDEWEB)

    Brennan, E.; Davis, S.H. Jr.

    1967-11-01

    Following a period of high pollution, extensive needle damage was observed on Austrian pine trees. Since the species is common in New Jersey, it was possible to obtain an approximation of its sensitivity. In nurseries, Christmas tree plantations and park areas, which included many species of conifers in addition to Austrian pine, species specifically noted as free from apparent damage were white pine (Pinus strobus), scotch pine (P. sylvestris), red pine (P. resinosa), Atlas cedar (Cedrus atlantica glauca), Norway spruce (Picea abies), Colorado spruce (P. pungens), white spruce (P. canadensis), balsam fir (Abies balsamea), Douglas-fir (Pseudotsuga taxifolia), and many varieties of juniper, arbor vitae, hemlock, and yew. During the survey needle damage, which could be traced back to the episode of 24 June, was also observed on Japanese red pine (P. densiflora) and Japanese black pine (P. densiflora) and Japanese black pine (P. Thunbergil). The injury to Japanese red pine was identical to that on Austrian pine, but on Japanese black pine the damage appeared not on the current year's needles, but on 1-year-old needles and it did not have the distinctive dividing line between injured and healthy tissue. These two species did not occur in sufficient number to allow further evaluation. Austrian pine has been cited in the literature as very tolerant of industrial smoke. Currently, German foresters are advising aginst the use of spruce and firs in industrial areas and are recommending ''resistant species as Austrian pine.'' In New Jersey fluoride damage has been observed on Austrian pine on occasion over the past 20 years. Because of the damage also caused by photochemical smog in New Jersey, the resistance of the species should be reevaluated. A need may develop for a breeding program to provide resistant material to the highly polluted metropolitan areas.

  17. Density, heating value, and composition of pellets made from lodgepole pine (Pinus concorta Douglas) infested with mountain pine beetle (Dendroctonus ponderosae Hopkins)

    Energy Technology Data Exchange (ETDEWEB)

    Zaini, P.; Kadla, J. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Wood Science; Sokansanj, S. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Chemical and Biological Engineering; Oak Ridge National Laboratory, Oak Ridge, TN (United States). Environmental Sciences Div., Bioenergy Resource and Engineering Systems; Bi, X.; Lim, C.J. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Chemical and Biological Engineering; Mani, S. [Georgia Univ., Athens, GA (United States). Faculty of Engineering; Melin, S. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Chemical and Biological Engineering; Delta Research Corp., Delta, BC (Canada)

    2008-07-01

    BC is currently experiencing the largest recorded mountain pine beetle (MPB) infestation in North America that has killed nearly 7 million hectares of pine. The dead trees gradually lose their suitability for dimension lumber and pulp chips due to excessive cracking and spoilage. The economic losses can be partly averted by recovering the killed wood and processing it into pellets for bioenergy and other applications. Currently, Canada exports roughly 750,000 tons of wood pellets to Europe as a fuel for heat and power. The most important physical properties of wood pellets are bulk and pellet density, heating value, moisture content, and durability. In light of the chemical and structural changes reported with MPB attack, it is important to develop engineering data on properties of MPB-affected pine for wood pellets. The objective of this study was to compare chemical composition, density, and heat value of pellets made from MPB-infested wood and to compare these properties with those measured for pellets made from uninfested wood. Chemical analysis showed minor decrease in lignin and sugar contents of pellets made from MPB wood. Pellets made from MPB-infested pine had a mean value for density larger than those made from uninfested pine but the difference was not statistically significant. Heating values of the pellets from MPB-infested wood were similar to those measured for pellets from uninfested wood. A preliminary observation of mold growth did not show any further staining or other decay fungi growth for the pellets made from MPB-infested wood. The pellets made from MPB-infested wood were found to be similar to pellets made from uninfested wood in density, heating value, and most chemical constituents. The overall conclusion was that MBP infested wood can be used to produce comparable pellets to non infested wood pellets. 37 refs., 6 tabs., 2 figs.

  18. [Variability of the cytological parameters of Pinus sylvestris L. seeds from the unique Hrenovskoy pine forest].

    Science.gov (United States)

    Butorina, A K; Cherkashina, O N; Chernodubov, A I; Avdeeva, I A

    2005-06-01

    Hrenovskoy pine forest is a unique island stand at the boundary of the species range of Scots pine Pinus sylvestris L. This object is of exceptional economic value, because it serves as a forest-seed base for the Voronezh oblast and some other regions of Russia; therefore, the stand and seed qualities have to be monitored constantly. The results of the first cytogenetic study of the seed progeny of P. sylvestris from the Morozov Grove, a high-quality stand in a reserved site within the Hrenovskoy pine forest, are reported. The studies have been performed in order to obtain a more correct assessment of seed quality based not only on their germination and energy of germination (traditionally used by forest breeders), but also on their genomic stability. The latter may be estimated by the stability of chromosome number in the somatic cells of seedlings and the regularity of mitotic divisions, because they also characterize the state of the generative system of parental forms and may serve as an integrated estimate of the stand development homeostasis. Therefore, the chromosome number, mitotic and nucleolar activities, and the number and spectrum of pathological mitoses (PMs) have been determined. Seedlings have been obtained from 240 seeds (collected from 12 trees) that resulted from free pollination. The cytological analysis of the rootlets of these seedlings has not detected any deviations from the chromosome number typical of the species P. sylvestris L. (2n = 24). However, considerable variation has been found in each family with respect to the mitotic index (MI) (from 4.2 +/- 0.36 to 8.1 +/- 0.39%) and the number of PMs (from 0.5 to 2.1%); micronuclei have also been found in each family (from 0.01 to 0.05%). In general, the phenotypic characteristics and the variation pattern of cytological parameters of the progeny of the trees studied in the Hrenovskoy pine forest, together with the high germination rate of seeds (90-98%), indicate that the current state of

  19. Seedling regeneration on decayed pine logs after the deforestation events caused by pine wilt disease

    Directory of Open Access Journals (Sweden)

    Y. Fukasawa

    2016-12-01

    Full Text Available Coarse woody debris (CWD forms an important habitat suitable for tree seedling establishment, and the CWD decay process influences tree seedling community. In Japan, a severe dieback of Pinus densiflora Sieb. & Zucc. caused by pine wilt disease (PWD damaged huge areas of pine stands but creates huge mass of pine CWD. It is important to know the factors influencing seedling colonization on pine CWD and their variations among geographical gradient in Japan to expect forest regeneration in post-PWD stands. I conducted field surveys on the effects of latitude, climates, light condition, decay type of pine logs, and log diameter on tree seedling colonization at ten geographically distinct sites in Japan. In total, 59 tree taxa were recorded as seedlings on pine logs. Among them, 13 species were recorded from more than five sites as adult trees or seedlings and were used for the analyses. A generalized linear model showed that seedling colonization of Pinus densiflora was negatively associated with brown rot in sapwood, while that of Rhus trichocarpa was positively associated with brown rot in heartwood. Regeneration of Ilex macropoda had no relationships with wood decay type but negatively associated with latitude and MAT, while positively with log diameter. These results suggested that wood decay type is a strong determinant of seedling establishment for certain tree species, even at a wide geographical scale; however, the effect is tree species specific.

  20. White pine blister rust resistance in limber pine: evidence for a major gene.

    Science.gov (United States)

    Schoettle, A W; Sniezko, R A; Kegley, A; Burns, K S

    2014-02-01

    Limber pine (Pinus flexilis) is being threatened by the lethal disease white pine blister rust caused by the non-native pathogen Cronartium ribicola. The types and frequencies of genetic resistance to the rust will likely determine the potential success of restoration or proactive measures. These first extensive inoculation trials using individual tree seed collections from >100 limber pine trees confirm that genetic segregation of a stem symptom-free trait to blister rust is consistent with inheritance by a single dominant resistance (R) gene, and the resistance allele appears to be distinct from the R allele in western white pine. Following previous conventions, we are naming the R gene for limber pine "Cr4." The frequency of the Cr4 allele across healthy and recently invaded populations in the Southern Rocky Mountains was unexpectedly high (5.0%, ranging from 0 to 13.9%). Cr4 is in equilibrium, suggesting that it is not a product of a recent mutation and may have other adaptive significance within the species, possibly related to other abiotic or biotic stress factors. The identification of Cr4 in native populations of limber pine early in the invasion progress in this region provides useful information for predicting near-term impacts and structuring long-term management strategies.

  1. Seedling regeneration on decayed pine logs after the deforestation events caused by pine wilt disease

    Directory of Open Access Journals (Sweden)

    Y. Fukasawa

    2016-12-01

    Full Text Available Coarse woody debris (CWD forms an important habitat suitable for tree seedling establishment, and the CWD decay process influences tree seedling community. In Japan, a severe dieback of Pinus densiflora Sieb. & Zucc. caused by pine wilt disease (PWD damaged huge areas of pine stands but creates huge mass of pine CWD. It is important to know the factors influencing seedling colonization on pine CWD and their variations among geographical gradient in Japan to expect forest regeneration in post-PWD stands. I conducted field surveys on the effects of latitude, climates, light condition, decay type of pine logs, and log diameter on tree seedling colonization at ten geographically distinct sites in Japan. In total, 59 tree taxa were recorded as seedlings on pine logs. Among them, 13 species were recorded from more than five sites as adult trees or seedlings and were used for the analyses. A generalized linear model showed that seedling colonization of Pinus densiflora was negatively associated with brown rot in sapwood, while that of Rhus trichocarpa was positively associated with brown rot in heartwood. Regeneration of Ilex macropoda had no relationships with wood decay type but negatively associated with latitude and MAT, while positively with log diameter. These results suggested that wood decay type is a strong determinant of seedling establishment for certain tree species, even at a wide geographical scale; however, the effect is tree species specific.

  2. Social Media’s Function in Organizations: A Functional Analysis Approach

    Directory of Open Access Journals (Sweden)

    Amy Reitz

    2012-12-01

    Full Text Available System theorists believe that organizations that function as an open system have a greater chance of survival than organizations that function as a closed system due to the exchange of inputs and outputs between the organization and its publics. Public relations researchers have proposed adopting a dialogic approach to public relations where interaction between the organization and its publics are mutual, which is the underpinning to an open systems approach. This paper posits that organizations can function within an open systems approach to public relations by employing social media. Adoption of a functional approach is a fruitful way to look at the social functions various social media serve in the system of organizations and their publics. Research has considered the gratifications publics receive from social media; however, limited research has considered what social media do for the organization-public relationship system. It has been argued that organizations also have psychological and social motivations; therefore, applying a functional analysis approach might be a good of way determining what functions social media serve in the organization-public relationship system. Four functions are proposed in which social media may serve the system: maintenance of organizational identity, opportunity to build relationships with publics, ability to control issues management, and the chance to promote social corporate responsibility. Understanding social media’s role in the system can help practitioners identify the functions that may contribute to an open systems approach to public relations and ultimately an organization’s survival.

  3. The Maslov index in weak symplectic functional analysis

    CERN Document Server

    Booss-Bavnbek, Bernhelm

    2013-01-01

    We recall the Chernoff-Marsden definition of weak symplectic structure and give a rigorous treatment of the functional analysis and geometry of weak symplectic Banach spaces. We define the Maslov index of a continuous path of Fredholm pairs of Lagrangian subspaces in continuously varying Banach spaces. We derive basic properties of this Maslov index and emphasize the new features appearing.

  4. Nonlinear boundary value problem for biregular functions in Clifford analysis

    Institute of Scientific and Technical Information of China (English)

    黄沙

    1996-01-01

    The biregular function in Clifford analysis is discussed. Plemelj’s formula is obtained andnonlinear boundary value problem: is considered. Applying the methodof integral equations and Schauder fixed-point theorem, the existence of solution for the above problem is proved.

  5. Semen analysis and sperm function tests: How much to test?

    Directory of Open Access Journals (Sweden)

    S S Vasan

    2011-01-01

    Full Text Available Semen analysis as an integral part of infertility investigations is taken as a surrogate measure for male fecundity in clinical andrology, male fertility, and pregnancy risk assessments. Clearly, laboratory seminology is still very much in its infancy. In as much as the creation of a conventional semen profile will always represent the foundations of male fertility evaluation, the 5th edition of the World Health Organization (WHO manual is a definitive statement on how such assessments should be carried out and how the quality should be controlled. A major advance in this new edition of the WHO manual, resolving the most salient critique of previous editions, is the development of the first well-defined reference ranges for semen analysis based on the analysis of over 1900 recent fathers. The methodology used in the assessment of the usual variables in semen analysis is described, as are many of the less common, but very valuable, sperm function tests. Sperm function testing is used to determine if the sperm have the biologic capacity to perform the tasks necessary to reach and fertilize ova and ultimately result in live births. A variety of tests are available to evaluate different aspects of these functions. To accurately use these functional assays, the clinician must understand what the tests measure, what the indications are for the assays, and how to interpret the results to direct further testing or patient management.

  6. Role of Cognition and Affect in a Functional Behavioral Analysis.

    Science.gov (United States)

    Nichols, Polly

    2000-01-01

    This article attempts to present a multidimensional perspective of functional behavioral analysis that will lead to psychoeducational interventions in which students with emotional/behavioral disorders are taught to think clearly, solve problems, and self-regulate the intensity of their emotions. (Contains references.) (Author/DB)

  7. Functional Analysis and Treatment of Noncompliance by Preschool Children

    OpenAIRE

    Wilder, David A; Harris, Carelle; Reagan, Renee; Rasey, Amy

    2007-01-01

    A functional analysis showed that noncompliance occurred most often for 2 preschoolers when it resulted in termination of a preferred activity, suggesting that noncompliance was maintained by positive reinforcement. A differential reinforcement procedure, which involved contingent access to coupons that could be exchanged for uninterrupted access to the activity maintaining noncompliance, was successful in increasing compliance for both children.

  8. Functional Analysis and Treatment of Noncompliance by Preschool Children

    Science.gov (United States)

    Wilder, David A.; Harris, Carelle; Reagan, Renee; Rasey, Amy

    2007-01-01

    A functional analysis showed that noncompliance occurred most often for 2 preschoolers when it resulted in termination of a preferred activity, suggesting that noncompliance was maintained by positive reinforcement. A differential reinforcement procedure, which involved contingent access to coupons that could be exchanged for uninterrupted access…

  9. Pomeron-Odderon Interactions: A Functional RG Flow Analysis

    CERN Document Server

    Vacca, Gian Paolo

    2016-01-01

    In the quest for an effective field theory which could help to understand some non perturbative feature of the QCD in the Regge limit, we consider a Reggeon Field Theory (RFT) for both Pomeron and Odderon interactions and perform an analysys of the critical theory using functional renormalization group techniques, unveiling a novel symmetry structure.

  10. Large-scale data analysis using the Wigner function

    Science.gov (United States)

    Earnshaw, R. A.; Lei, C.; Li, J.; Mugassabi, S.; Vourdas, A.

    2012-04-01

    Large-scale data are analysed using the Wigner function. It is shown that the 'frequency variable' provides important information, which is lost with other techniques. The method is applied to 'sentiment analysis' in data from social networks and also to financial data.

  11. ON RUBIN'S HARMONIC ANALYSIS AND ITS RELATED POSITIVE DEFINITE FUNCTIONS

    Institute of Scientific and Technical Information of China (English)

    Néji Bettaibi; Kamel Mezlini; Moufida El Guénichi

    2012-01-01

    In this paper,a new formulation of the Rubin's q-translation is given,which leads to a reliable q-harmonic analysis.Next,related q-positive definite functions are introduced and studied,and a Bochner's theorem is proved.

  12. Functional MRI experiments : acquisition, analysis and interpretation of data

    NARCIS (Netherlands)

    Ramsey, NF; Hoogduin, H; Jansma, JM

    2002-01-01

    Functional MRI is widely used to address basic and clinical neuroscience questions. In the key domains of fMRI experiments, i.e. acquisition, processing and analysis, and interpretation of data, developments are ongoing. The main issues are sensitivity for changes in fMRI signal that are associated

  13. Lexical, Functional Grammar Analysis of Korean Complex Predicates.

    Science.gov (United States)

    Kim, Hee-Seob

    The structure of complementation in complex predicates in Korean has attracted configurational analysis. Using a lexical functional grammar (LFG) framework, this paper examines the structure of complementation in complex predicates. The term "predicate" in this context is used to describe both verbs and adjectives that are assumed to…

  14. Hydraulic adjustment of Scots pine across Europe

    NARCIS (Netherlands)

    Martínez-Vilalta, J.; Cochard, H.; Mencuccini, M.; Sterck, F.J.; Herrero, A.; Korhonen, J.F.J.; Llorens, P.; Nikinmaa, E.; Nolè, A.; Poyatos, R.; Ripullone, F.; Sass-Klaassen, U.; Zweifel, R.

    2009-01-01

    The variability of branch-level hydraulic properties was assessed across 12 Scots pine populations covering a wide range of environmental conditions, including some of the southernmost populations of the species. The aims were to relate this variability to differences in climate, and to study the po

  15. Status of Pituophis ruthveni (Louisiana pine snake)

    Science.gov (United States)

    D. Craig Rudolph; Shirley J. Burgdorf; Richard R. Schaefer; Richard N. Conner; Ricky W. Maxey

    2006-01-01

    Extensive trapping surveys across the historical range of Pituophis ruthveni (Louisiana Pine Snake) suggest that extant populations are extremely small and limited to remnant patches of suitable habitat in a highly fragmented landscape. Evaluation of habitat at all known historical localities of P. ruthveni documents the widespread...

  16. Mountain Pine Beetle Dynamics and Reproductive Success in Post-Fire Lodgepole and Ponderosa Pine Forests in Northeastern Utah.

    Science.gov (United States)

    Lerch, Andrew P; Pfammatter, Jesse A; Bentz, Barbara J; Raffa, Kenneth F

    2016-01-01

    Fire injury can increase tree susceptibility to some bark beetles (Curculionidae, Scolytinae), but whether wildfires can trigger outbreaks of species such as mountain pine beetle (Dendroctonus ponderosae Hopkins) is not well understood. We monitored 1173 lodgepole (Pinus contorta var. latifolia Doug.) and 599 ponderosa (Pinus ponderosa Doug. ex Law) pines for three years post-wildfire in the Uinta Mountains of northeastern Utah in an area with locally endemic mountain pine beetle. We examined how the degree and type of fire injury influenced beetle attacks, brood production, and subsequent tree mortality, and related these to beetle population changes over time. Mountain pine beetle population levels were high the first two post-fire years in lodgepole pine, and then declined. In ponderosa pine, populations declined each year after initial post-fire sampling. Compared to trees with strip or failed attacks, mass attacks occurred on trees with greater fire injury, in both species. Overall, a higher degree of damage to crowns and boles was associated with higher attack rates in ponderosa pines, but additional injury was more likely to decrease attack rates in lodgepole pines. In lodgepole pine, attacks were initially concentrated on fire-injured trees, but during subsequent years beetles attacked substantial numbers of uninjured trees. In ponderosa pine, attacks were primarily on injured trees each year, although these stands were more heavily burned and had few uninjured trees. In total, 46% of all lodgepole and 56% of ponderosa pines underwent some degree of attack. Adult brood emergence within caged bole sections decreased with increasing bole char in lodgepole pine but increased in ponderosa pine, however these relationships did not scale to whole trees. Mountain pine beetle populations in both tree species four years post-fire were substantially lower than the year after fire, and wildfire did not result in population outbreaks.

  17. Epistasis analysis for quantitative traits by functional regression model.

    Science.gov (United States)

    Zhang, Futao; Boerwinkle, Eric; Xiong, Momiao

    2014-06-01

    The critical barrier in interaction analysis for rare variants is that most traditional statistical methods for testing interactions were originally designed for testing the interaction between common variants and are difficult to apply to rare variants because of their prohibitive computational time and poor ability. The great challenges for successful detection of interactions with next-generation sequencing (NGS) data are (1) lack of methods for interaction analysis with rare variants, (2) severe multiple testing, and (3) time-consuming computations. To meet these challenges, we shift the paradigm of interaction analysis between two loci to interaction analysis between two sets of loci or genomic regions and collectively test interactions between all possible pairs of SNPs within two genomic regions. In other words, we take a genome region as a basic unit of interaction analysis and use high-dimensional data reduction and functional data analysis techniques to develop a novel functional regression model to collectively test interactions between all possible pairs of single nucleotide polymorphisms (SNPs) within two genome regions. By intensive simulations, we demonstrate that the functional regression models for interaction analysis of the quantitative trait have the correct type 1 error rates and a much better ability to detect interactions than the current pairwise interaction analysis. The proposed method was applied to exome sequence data from the NHLBI's Exome Sequencing Project (ESP) and CHARGE-S study. We discovered 27 pairs of genes showing significant interactions after applying the Bonferroni correction (P-values < 4.58 × 10(-10)) in the ESP, and 11 were replicated in the CHARGE-S study.

  18. Quantitative characterization of clumping in Scots pine crowns.

    Science.gov (United States)

    Stenberg, Pauline; Mõttus, Matti; Rautiainen, Miina; Sievänen, Risto

    2014-09-01

    Proper characterization of the clumped structure of forests is needed for calculation of the absorbed radiation and photosynthetic production by a canopy. This study examined the dependency of crown-level clumping on tree size and growth conditions in Scots pine (Pinus sylvestris), and determined the ability of statistical canopy radiation models to quantify the degree of self-shading within crowns as a result of the clumping effect. Twelve 3-D Scots pine trees were generated using an application of the LIGNUM model, and the crown-level clumping as quantified by the crown silhouette to total needle area ratio (STAR(crown)) was calculated. The results were compared with those produced by the stochastic approach of modelling tree crowns as geometric shapes filled with a random medium. Crown clumping was independent of tree height, needle area and growth conditions. The results supported the capability of the stochastic approach in characterizing clumping in crowns given that the outer shell of the tree crown is well represented. Variation in the whole-stand clumping index is induced by differences in the spatial pattern of trees as a function of, for example, stand age rather than by changes in the degree of self-shading within individual crowns as they grow bigger.

  19. Particle size and shape distributions of hammer milled pine

    Energy Technology Data Exchange (ETDEWEB)

    Westover, Tyler Lott [Idaho National Lab. (INL), Idaho Falls, ID (United States); Matthews, Austin Colter [Idaho National Lab. (INL), Idaho Falls, ID (United States); Williams, Christopher Luke [Idaho National Lab. (INL), Idaho Falls, ID (United States); Ryan, John Chadron Benjamin [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-04-01

    Particle size and shape distributions impact particle heating rates and diffusion of volatized gases out of particles during fast pyrolysis conversion, and consequently must be modeled accurately in order for computational pyrolysis models to produce reliable results for bulk solid materials. For this milestone, lodge pole pine chips were ground using a Thomas-Wiley #4 mill using two screen sizes in order to produce two representative materials that are suitable for fast pyrolysis. For the first material, a 6 mm screen was employed in the mill and for the second material, a 3 mm screen was employed in the mill. Both materials were subjected to RoTap sieve analysis, and the distributions of the particle sizes and shapes were determined using digital image analysis. The results of the physical analysis will be fed into computational pyrolysis simulations to create models of materials with realistic particle size and shape distributions. This milestone was met on schedule.

  20. Particle size and shape distributions of hammer milled pine

    Energy Technology Data Exchange (ETDEWEB)

    Westover, Tyler Lott [Idaho National Lab. (INL), Idaho Falls, ID (United States); Matthews, Austin Colter [Idaho National Lab. (INL), Idaho Falls, ID (United States); Williams, Christopher Luke [Idaho National Lab. (INL), Idaho Falls, ID (United States); Ryan, John Chadron Benjamin [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-04-01

    Particle size and shape distributions impact particle heating rates and diffusion of volatized gases out of particles during fast pyrolysis conversion, and consequently must be modeled accurately in order for computational pyrolysis models to produce reliable results for bulk solid materials. For this milestone, lodge pole pine chips were ground using a Thomas-Wiley #4 mill using two screen sizes in order to produce two representative materials that are suitable for fast pyrolysis. For the first material, a 6 mm screen was employed in the mill and for the second material, a 3 mm screen was employed in the mill. Both materials were subjected to RoTap sieve analysis, and the distributions of the particle sizes and shapes were determined using digital image analysis. The results of the physical analysis will be fed into computational pyrolysis simulations to create models of materials with realistic particle size and shape distributions. This milestone was met on schedule.

  1. Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana.

    Science.gov (United States)

    Kirst, Matias; Johnson, Arthur F; Baucom, Christie; Ulrich, Erin; Hubbard, Kristy; Staggs, Rod; Paule, Charles; Retzel, Ernest; Whetten, Ross; Sederoff, Ronald

    2003-06-10

    Pinus taeda L. (loblolly pine) and Arabidopsis thaliana differ greatly in form, ecological niche, evolutionary history, and genome size. Arabidopsis is a small, herbaceous, annual dicotyledon, whereas pines are large, long-lived, coniferous forest trees. Such diverse plants might be expected to differ in a large number of functional genes. We have obtained and analyzed 59,797 expressed sequence tags (ESTs) from wood-forming tissues of loblolly pine and compared them to the gene sequences inferred from the complete sequence of the Arabidopsis genome. Approximately 50% of pine ESTs have no apparent homologs in Arabidopsis or any other angiosperm in public databases. When evaluated by using contigs containing long, high-quality sequences, we find a higher level of apparent homology between the inferred genes of these two species. For those contigs 1,100 bp or longer, approximately 90% have an apparent Arabidopsis homolog (E value < 10-10). Pines and Arabidopsis last shared a common ancestor approximately 300 million years ago. Few genes would be expected to retain high sequence similarity for this time if they did not have essential functions. These observations suggest substantial conservation of gene sequence in seed plants.

  2. A Range-Wide Experiment to Investigate Nutrient and Soil Moisture Interactions in Loblolly Pine Plantations

    Directory of Open Access Journals (Sweden)

    Rodney E. Will

    2015-06-01

    Full Text Available The future climate of the southeastern USA is predicted to be warmer, drier and more variable in rainfall, which may increase drought frequency and intensity. Loblolly pine (Pinus taeda is the most important commercial tree species in the world and is planted on ~11 million ha within its native range in the southeastern USA. A regional study was installed to evaluate effects of decreased rainfall and nutrient additions on loblolly pine plantation productivity and physiology. Four locations were established to capture the range-wide variability of soil and climate. Treatments were initiated in 2012 and consisted of a factorial combination of throughfall reduction (approximate 30% reduction and fertilization (complete suite of nutrients. Tree and stand growth were measured at each site. Results after two growing seasons indicate a positive but variable response of fertilization on stand volume increment at all four sites and a negative effect of throughfall reduction at two sites. Data will be used to produce robust process model parameterizations useful for simulating loblolly pine growth and function under future, novel climate and management scenarios. The resulting improved models will provide support for developing management strategies to increase pine plantation productivity and carbon sequestration under a changing climate.

  3. Cervid forage utilization in noncommercially thinned ponderosa pine forests

    Science.gov (United States)

    Gibbs, M.C.; Jenks, J.A.; Deperno, C.S.; Sowell, B.F.; Jenkins, Kurt J.

    2004-01-01

    To evaluate effects of noncommercial thinning, utilization of forages consumed by elk (Cervus elaphus L.), mule deer (Odocoileus hemionus Raf.), and white-tailed deer (Odocoileus virginianus Raf.) was measured in ponderosa pine (Pinus ponderosa P. & C. Lawson) stands in Custer State Park, S. D. Treatments consisted of unthinned (control; 22 to 32 m2/ha basal area), moderately thinned (12 to 22 m2/ha basal area), and heavily thinned (3 to 13 m2/ha basal area) stands of ponderosa pine. During June, July, and August, 1991 and 1992, about 7,000 individual plants were marked along permanent transects and percent-weight-removed by grazing was ocularly estimated. Sample plots were established along transects and plants within plots were clipped to estimate standing biomass. Pellet groups were counted throughout the study area to determine summer habitat use of elk and deer. Diet composition was evaluated using microhistological analysis of fecal samples. Average percent-weight-removed from all marked plants and percent-plants-grazed were used to evaluate forage utilization. Standing biomass of graminoids, shrubs, and forbs increased (P 0.05) across treatments. Forb use averaged less than 5% within sampling periods when measured as percent-weight-removed and percent-of-plants grazed and did not differ among treatments. Results of pellet group surveys indicated that cervids were primarily using meadow habitats. When averaged over the 2 years, forbs were the major forage class in deer diets, whereas graminoids were the major forage class in diets of elk.

  4. Consolidity analysis for fully fuzzy functions, matrices, probability and statistics

    Directory of Open Access Journals (Sweden)

    Walaa Ibrahim Gabr

    2015-03-01

    Full Text Available The paper presents a comprehensive review of the know-how for developing the systems consolidity theory for modeling, analysis, optimization and design in fully fuzzy environment. The solving of systems consolidity theory included its development for handling new functions of different dimensionalities, fuzzy analytic geometry, fuzzy vector analysis, functions of fuzzy complex variables, ordinary differentiation of fuzzy functions and partial fraction of fuzzy polynomials. On the other hand, the handling of fuzzy matrices covered determinants of fuzzy matrices, the eigenvalues of fuzzy matrices, and solving least-squares fuzzy linear equations. The approach demonstrated to be also applicable in a systematic way in handling new fuzzy probabilistic and statistical problems. This included extending the conventional probabilistic and statistical analysis for handling fuzzy random data. Application also covered the consolidity of fuzzy optimization problems. Various numerical examples solved have demonstrated that the new consolidity concept is highly effective in solving in a compact form the propagation of fuzziness in linear, nonlinear, multivariable and dynamic problems with different types of complexities. Finally, it is demonstrated that the implementation of the suggested fuzzy mathematics can be easily embedded within normal mathematics through building special fuzzy functions library inside the computational Matlab Toolbox or using other similar software languages.

  5. Cocaine dependence and thalamic functional connectivity: a multivariate pattern analysis

    Directory of Open Access Journals (Sweden)

    Sheng Zhang

    2016-01-01

    Full Text Available Cocaine dependence is associated with deficits in cognitive control. Previous studies demonstrated that chronic cocaine use affects the activity and functional connectivity of the thalamus, a subcortical structure critical for cognitive functioning. However, the thalamus contains nuclei heterogeneous in functions, and it is not known how thalamic subregions contribute to cognitive dysfunctions in cocaine dependence. To address this issue, we used multivariate pattern analysis (MVPA to examine how functional connectivity of the thalamus distinguishes 100 cocaine-dependent participants (CD from 100 demographically matched healthy control individuals (HC. We characterized six task-related networks with independent component analysis of fMRI data of a stop signal task and employed MVPA to distinguish CD from HC on the basis of voxel-wise thalamic connectivity to the six independent components. In an unbiased model of distinct training and testing data, the analysis correctly classified 72% of subjects with leave-one-out cross-validation (p < 0.001, superior to comparison brain regions with similar voxel counts (p < 0.004, two-sample t test. Thalamic voxels that form the basis of classification aggregate in distinct subclusters, suggesting that connectivities of thalamic subnuclei distinguish CD from HC. Further, linear regressions provided suggestive evidence for a correlation of the thalamic connectivities with clinical variables and performance measures on the stop signal task. Together, these findings support thalamic circuit dysfunction in cognitive control as an important neural marker of cocaine dependence.

  6. A Semi-Automated Functional Test Data Analysis Tool

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Peng; Haves, Philip; Kim, Moosung

    2005-05-01

    The growing interest in commissioning is creating a demand that will increasingly be met by mechanical contractors and less experienced commissioning agents. They will need tools to help them perform commissioning effectively and efficiently. The widespread availability of standardized procedures, accessible in the field, will allow commissioning to be specified with greater certainty as to what will be delivered, enhancing the acceptance and credibility of commissioning. In response, a functional test data analysis tool is being developed to analyze the data collected during functional tests for air-handling units. The functional test data analysis tool is designed to analyze test data, assess performance of the unit under test and identify the likely causes of the failure. The tool has a convenient user interface to facilitate manual entry of measurements made during a test. A graphical display shows the measured performance versus the expected performance, highlighting significant differences that indicate the unit is not able to pass the test. The tool is described as semiautomated because the measured data need to be entered manually, instead of being passed from the building control system automatically. However, the data analysis and visualization are fully automated. The tool is designed to be used by commissioning providers conducting functional tests as part of either new building commissioning or retro-commissioning, as well as building owners and operators interested in conducting routine tests periodically to check the performance of their HVAC systems.

  7. Lectures on functional analysis and the Lebesgue integral

    CERN Document Server

    Komornik, Vilmos

    2016-01-01

    This textbook, based on three series of lectures held by the author at the University of Strasbourg, presents functional analysis in a non-traditional way by generalizing elementary theorems of plane geometry to spaces of arbitrary dimension. This approach leads naturally to the basic notions and theorems. Most results are illustrated by the small ℓp spaces. The Lebesgue integral, meanwhile, is treated via the direct approach of Frigyes Riesz, whose constructive definition of measurable functions leads to optimal, clear-cut versions of the classical theorems of Fubini-Tonelli and Radon-Nikodým. Lectures on Functional Analysis and the Lebesgue Integral presents the most important topics for students, with short, elegant proofs. The exposition style follows the Hungarian mathematical tradition of Paul Erdős and others. The order of the first two parts, functional analysis and the Lebesgue integral, may be reversed. In the third and final part they are combined to study various spaces of continuous and integ...

  8. 伊春市朗乡自然保护区原始红松林的结构特征分析%Structural Analysis of Original Korean Pine Forest In Langxiang Nature Reserve of Yichun

    Institute of Scientific and Technical Information of China (English)

    曹孟磊; 巩垠熙; 冯仲科; 张巍巍; 汪笑安

    2012-01-01

    阔叶红松林是分布在北温带的多物种、多层次、多价值、多效益的一种森林类型,具有物种丰富、结构复杂、生物量高、自我维持能力强的特点,是被普遍认同的高价值、高产量的森林资源.在伊春市朗乡林业局东折棱河林场的原始红松林中选取8个30m×30m的标准地进行调查,分析其林分结构组成,树种空间分布格局和更新情况等.结果认为,东折棱河林场原始红松林的主要伴生阔叶树种为蒙古栎、色木槭等,成林红松多为随机分布,原始红松林下的红松更新情况较差.%Broad-leaved Korean pine forest is a forest type distributed in northern temperate zone with multi-species, multi-level, multi-value, multi-effectiveness. It has characteristics of species richness, structural complexity, biomass high, self-sustaining ability, and is considered as forest resources with high-value and high-yield. By setting eight sample plots of 30m x 30m in original Korean pine forest of Yichun Langxiang East River Forest farm, the composition of forest structure , spatial distribution pattern, renovation status are analyzed. Results shows that major associated broad-leaved species of original Korean pine forest in East River edge are Quercus mongolica, Acer mono and etc. and mature forest of Korean pine are distributed in random with poor renovation conditions.

  9. Function-Oriented Mobile Malware Analysis as First Aid

    Directory of Open Access Journals (Sweden)

    Jae-wook Jang

    2016-01-01

    Full Text Available Recently, highly well-crafted mobile malware has arisen as mobile devices manage highly valuable and sensitive information. Currently, it is impossible to detect and prevent all malware because the amount of new malware continues to increase exponentially; malware detection methods need to improve in order to respond quickly and effectively to malware. For the quick response, revealing the main purpose or functions of captured malware is important; however, only few recent works have attempted to find malware’s main purpose. Our approach is designed to help with efficient and effective incident responses or countermeasure development by analyzing the main functions of malicious behavior. In this paper, we propose a novel method for function-oriented malware analysis approach based on analysis of suspicious API call patterns. Instead of extracting API call patterns for malware in each family, we focus on extracting such patterns for certain malicious functionalities. Our proposed method dumps memory sections where an application is allocated and extracts suspicious API sequences from bytecode by comparing with predefined suspicious API lists. By matching API call patterns with our functionality database, our method determines whether they are malicious. The experiment results demonstrate that our method performs well in detecting malware with high accuracy.

  10. Informing the Structure of Executive Function in Children: A Meta-Analysis of Functional Neuroimaging Data.

    Science.gov (United States)

    McKenna, Róisín; Rushe, T; Woodcock, Kate A

    2017-01-01

    The structure of executive function (EF) has been the focus of much debate for decades. What is more, the complexity and diversity provided by the developmental period only adds to this contention. The development of executive function plays an integral part in the expression of children's behavioral, cognitive, social, and emotional capabilities. Understanding how these processes are constructed during development allows for effective measurement of EF in this population. This meta-analysis aims to contribute to a better understanding of the structure of executive function in children. A coordinate-based meta-analysis was conducted (using BrainMap GingerALE 2.3), which incorporated studies administering functional magnetic resonance imaging (fMRI) during inhibition, switching, and working memory updating tasks in typical children (aged 6-18 years). The neural activation common across all executive tasks was compared to that shared by tasks pertaining only to inhibition, switching or updating, which are commonly considered to be fundamental executive processes. Results support the existence of partially separable but partially overlapping inhibition, switching, and updating executive processes at a neural level, in children over 6 years. Further, the shared neural activation across all tasks (associated with a proposed "unitary" component of executive function) overlapped to different degrees with the activation associated with each individual executive process. These findings provide evidence to support the suggestion that one of the most influential structural models of executive functioning in adults can also be applied to children of this age. However, the findings also call for careful consideration and measurement of both specific executive processes, and unitary executive function in this population. Furthermore, a need is highlighted for a new systematic developmental model, which captures the integrative nature of executive function in children.

  11. Method of guiding functions in problems of nonlinear analysis

    CERN Document Server

    Obukhovskii, Valeri; Van Loi, Nguyen; Kornev, Sergei

    2013-01-01

    This book offers a self-contained introduction to the theory of guiding functions methods, which can be used to study the existence of periodic solutions and their bifurcations in ordinary differential equations, differential inclusions and in control theory. It starts with the basic concepts of nonlinear and multivalued analysis, describes the classical aspects of the method of guiding functions, and then presents recent findings only available in the research literature. It describes essential applications in control theory, the theory of bifurcations, and physics, making it a valuable resource not only for “pure” mathematicians, but also for students and researchers working in applied mathematics, the engineering sciences and physics.

  12. Sapwood Stored Resources Decline in Whitebark and Lodgepole Pines Attacked by Mountain Pine Beetles (Coleoptera: Curculionidae).

    Science.gov (United States)

    Lahr, Eleanor C; Sala, Anna

    2016-12-01

    Recent outbreaks of forest insects have been directly linked to climate change-induced warming and drought, but effects of tree stored resources on insects have received less attention. We asked whether tree stored resources changed following mountain pine beetle (Dendroctonus ponderosae Hopkins) attack and whether they affected beetle development. We compared initial concentrations of stored resources in the sapwood of whitebark pine (Pinus albicaulis Engelmann) and lodgepole pine (Pinus contorta Douglas ex. Louden) with resource concentrations one year later, in trees that were naturally attacked by beetles and trees that remained unattacked. Beetles did not select host trees based on sapwood resources-there were no consistent a priori differences between attacked versus unattacked trees-but concentrations of nonstructural carbohydrate (NSC), lipids, and phosphorus declined in attacked trees, relative to initial concentrations and unattacked trees. Whitebark pine experienced greater resource declines than lodgepole pine; however, sapwood resources were not correlated with beetle success in either species. Experimental manipulation confirmed that the negative effect of beetles on sapwood and phloem NSC was not due to girdling. Instead, changes in sapwood resources were related to the percentage of sapwood with fungal blue-stain. Overall, mountain pine beetle attack affected sapwood resources, but sapwood resources did not contribute directly to beetle success; instead, sapwood resources may support colonization by beetle-vectored fungi that potentially accelerate tree mortality. Closer attention to stored resource dynamics will improve our understanding of the interaction between mountain pine beetles, fungi, and host trees, an issue that is relevant to our understanding of insect range expansion under climate change.

  13. Pine Gene Discovery Project - Final Report - 08/31/1997 - 02/28/2001

    Energy Technology Data Exchange (ETDEWEB)

    Whetten, R. W.; Sederoff, R. R.; Kinlaw, C.; Retzel, E.

    2001-04-30

    Integration of pines into the large scope of plant biology research depends on study of pines in parallel with study of annual plants, and on availability of research materials from pine to plant biologists interested in comparing pine with annual plant systems. The objectives of the Pine Gene Discovery Project were to obtain 10,000 partial DNA sequences of genes expressed in loblolly pine, to determine which of those pine genes were similar to known genes from other organisms, and to make the DNA sequences and isolated pine genes available to plant researchers to stimulate integration of pines into the wider scope of plant biology research. Those objectives have been completed, and the results are available to the public. Requests for pine genes have been received from a number of laboratories that would otherwise not have included pine in their research, indicating that progress is being made toward the goal of integrating pine research into the larger molecular biology research community.

  14. Climate Change and Ecosystem Services Output Efficiency in Southern Loblolly Pine Forests

    Science.gov (United States)

    Susaeta, Andres; Adams, Damian C.; Carter, Douglas R.; Dwivedi, Puneet

    2016-09-01

    Forests provide myriad ecosystem services that are vital to humanity. With climate change, we expect to see significant changes to forests that will alter the supply of these critical services and affect human well-being. To better understand the impacts of climate change on forest-based ecosystem services, we applied a data envelopment analysis method to assess plot-level efficiency in the provision of ecosystem services in Florida natural loblolly pine ( Pinus taeda L.) forests. Using field data for n = 16 loblolly pine forest plots, including inputs such as site index, tree density, age, precipitation, and temperatures for each forest plot, we assessed the relative plot-level production of three ecosystem services: timber, carbon sequestered, and species richness. The results suggested that loblolly pine forests in Florida were largely inefficient in the provision of these ecosystem services under current climatic conditions. Climate change had a small negative impact on the loblolly pine forests efficiency in the provision of ecosystem services. In this context, we discussed the reduction of tree density that may not improve ecosystem services production.

  15. On the number of genes controlling the grass stage in longleaf pine.

    Science.gov (United States)

    Nelson, C D; Weng, C; Kubisiak, T L; Stine, M; Brown, C L

    2003-01-01

    The grass stage is an inherent and distinctive developmental trait of longleaf pine (Pinus palustris), in which height growth in the first few years after germination is suppressed. In operational forestry practice the grass stage extends for two to several years and often plays a role in planting failures and decisions to plant alternative species. Interspecies hybrids involving loblolly (P. taeda) and slash (P. elliottii var. elliottii) pines have been investigated as a means to produce planting stock with improved early height growth and to develop backcross populations for advanced generation breeding. We have reevaluated data from several interspecies populations, with the objective of estimating the number of genes contributing to the difference in first-year height growth between longleaf and loblolly pines. Estimates based on means and variances of parental and interspecies hybrid and backcross families suggest a minimum of 4 to 10 genes with standard errors less than half the estimates. These results suggest that the grass stage has evolved through the accumulation of alleles at several loci, each with small effects on various components of first-year height growth. Given the complexity of the grass-stage trait, tree breeders may need to combine genetic marker analysis with recurrent backcross breeding to efficiently develop longleaf pine planting stock for improved reforestation.

  16. Exploratory functional flood frequency analysis and outlier detection

    Science.gov (United States)

    Chebana, Fateh; Dabo-Niang, Sophie; Ouarda, Taha B. M. J.

    2012-04-01

    The prevention of flood risks and the effective planning and management of water resources require river flows to be continuously measured and analyzed at a number of stations. For a given station, a hydrograph can be obtained as a graphical representation of the temporal variation of flow over a period of time. The information provided by the hydrograph is essential to determine the severity of extreme events and their frequencies. A flood hydrograph is commonly characterized by its peak, volume, and duration. Traditional hydrological frequency analysis (FA) approaches focused separately on each of these features in a univariate context. Recent multivariate approaches considered these features jointly in order to take into account their dependence structure. However, all these approaches are based on the analysis of a number of characteristics and do not make use of the full information content of the hydrograph. The objective of the present work is to propose a new framework for FA using the hydrographs as curves: functional data. In this context, the whole hydrograph is considered as one infinite-dimensional observation. This context allows us to provide more effective and efficient estimates of the risk associated with extreme events. The proposed approach contributes to addressing the problem of lack of data commonly encountered in hydrology by fully employing all the information contained in the hydrographs. A number of functional data analysis tools are introduced and adapted to flood FA with a focus on exploratory analysis as a first stage toward a complete functional flood FA. These methods, including data visualization, location and scale measures, principal component analysis, and outlier detection, are illustrated in a real-world flood analysis case study from the province of Quebec, Canada.

  17. Shape Error Analysis of Functional Surface Based on Isogeometrical Approach

    Science.gov (United States)

    YUAN, Pei; LIU, Zhenyu; TAN, Jianrong

    2017-05-01

    The construction of traditional finite element geometry (i.e., the meshing procedure) is time consuming and creates geometric errors. The drawbacks can be overcame by the Isogeometric Analysis (IGA), which integrates the computer aided design and structural analysis in a unified way. A new IGA beam element is developed by integrating the displacement field of the element, which is approximated by the NURBS basis, with the internal work formula of Euler-Bernoulli beam theory with the small deformation and elastic assumptions. Two cases of the strong coupling of IGA elements, "beam to beam" and "beam to shell", are also discussed. The maximum relative errors of the deformation in the three directions of cantilever beam benchmark problem between analytical solutions and IGA solutions are less than 0.1%, which illustrate the good performance of the developed IGA beam element. In addition, the application of the developed IGA beam element in the Root Mean Square (RMS) error analysis of reflector antenna surface, which is a kind of typical functional surface whose precision is closely related to the product's performance, indicates that no matter how coarse the discretization is, the IGA method is able to achieve the accurate solution with less degrees of freedom than standard Finite Element Analysis (FEA). The proposed research provides an effective alternative to standard FEA for shape error analysis of functional surface.

  18. The effect of water limitation on volatile emission, tree defense response, and brood success of Dendroctonus ponderosae in two pine hosts, lodgepole and jack pine

    Directory of Open Access Journals (Sweden)

    Inka eLusebrink

    2016-02-01

    Full Text Available The mountain pine beetle (MPB; Dendroctonus ponderosae has recently expanded its range from lodgepole pine forest into the lodgepole × jack pine hybrid zone in central Alberta, within which it has attacked pure jack pine. This study tested the effects of water limitation on tree defense response of mature lodgepole and jack pine (Pinus contorta and Pinus banksiana trees in the field. Tree defense response was initiated by inoculation of trees with the MPB-associated fungus Grosmannia clavigera and measured through monoterpene emission from tree boles and concentration of defensive compounds in phloem, needles, and necrotic tissues. Lodgepole pine generally emitted higher amounts of monoterpenes than jack pine; particularly from fungal-inoculated trees. Compared to non-inoculated trees, fungal inoculation increased monoterpene emission in both species, whereas water treatment had no effect on monoterpene emission. The phloem of both pine species contains (--α-pinene, the precursor of the beetle’s aggregation pheromone, however lodgepole pine contains two times as much as jack pine. The concentration of defensive compounds was 70-fold greater in the lesion tissue in jack pine, but only 10-fold in lodgepole pine compared to healthy phloem tissue in each species, respectively. Water-deficit treatment inhibited an increase of L-limonene as response to fungal inoculation in lodgepole pine phloem. The amount of myrcene in jack pine phloem was higher in water-deficit trees compared to ambient trees. Beetles reared in jack pine were not affected by either water or biological treatment, whereas beetles reared in lodgepole pine benefited from fungal inoculation by producing larger and heavier female offspring. Female beetles that emerged from jack pine bolts contained more fat than those that emerged from lodgepole pine, even though lodgepole pine phloem had a higher nitrogen content than jack pine phloem. These results suggest that jack pine chemistry

  19. Demographic projection of high-elevation white pines infected with white pine blister rust: a nonlinear disease model.

    Science.gov (United States)

    Field, S G; Schoettle, A W; Klutsch, J G; Tavener, S J; Antolin, M F

    2012-01-01

    Matrix population models have long been used to examine and predict the fate of threatened populations. However, the majority of these efforts concentrate on long-term equilibrium dynamics of linear systems and their underlying assumptions and, therefore, omit the analysis of transience. Since management decisions are typically concerned with the short-term (blister rust (WPBR). We evaluate the model using newly developed software to calculate sensitivity and elasticity for nonlinear population models at any projected time step. We concentrate on two points in time, during transience and at equilibrium, and under two scenarios: a regenerating pine stand following environmental disturbance and a stand perturbed by the introduction of WPBR. The model includes strong density-dependent effects on population dynamics, particularly on seedling recruitment, and results in a structure favoring large trees. However, the introduction of WPBR and its associated disease-induced mortality alters stand structure in favor of smaller stages. Populations with infection probability (beta) > or = 0.1 do not reach a stable coexisting equilibrium and deterministically approach extinction. The model enables field observations of low infection prevalence among pine seedlings to be reinterpreted as resulting from disease-induced mortality and short residence time in the seedling stage. Sensitivities and elasticities, combined with model output, suggest that future efforts should focus on improving estimates of within-stand competition, infection probability, and infection cost to survivorship. Mitigating these effects where intervention is possible is expected to produce the greatest effect on population dynamics over a typical management timeframe.

  20. Differences in arthropod communities between island and inland Masson pine forests infested by pine wilt disease in Zhejiang Province

    Institute of Scientific and Technical Information of China (English)

    WU Hai-wei; LUO You-qing; SHI Juan; YAN Xiao-su; CHEN Wei-ping; JIANG Ping

    2008-01-01

    The invasion of Bursaphelenchus xylophilus (pine wood nematode, PWN) carried by Monochamus alternatus predominately attacks Masson pine (Pinus massoniana) forests and causes great economic losses in China. In this study, we assessed whether the effect of the invasion of PWN is different between island and inland forests. Arthropods were sampled in Fuyang (inland) and Zhoushan (island) counties in Zhejiang Province with sweep netting and light traps at four plots. During two field periods (May to June 2004 and September to October 2005) a total of 21,916 insects, representing 384 species belonging to 99 families and 15 orders,were collected in the sample plots from the island, whereas, from the inland forest a total of 29,262 insects, representing 308 species belonging to 96 families and 13 orders, were found. A hierarchical cluster analysis (HCA) and one-way ANOVA, based on the composition of different arthropod guilds, were performed. The results showed that there was no significant difference in the composition of arthropod communities at the family level between inland and island. But these two habitats had a significant effect on the composition of species, individuals, sub-communities and energy class levels. Statistically, the composition of the two orders, Lepidoptera and Diptera, in the two habitats were significantly different.