WorldWideScience

Sample records for pathway analysis hydrological

  1. Environmental-pathways analysis for evaluation of a low-level waste disposal site

    International Nuclear Information System (INIS)

    Lee, D.W.; Ketelle, R.H.; Pin, F.G.; Hill, G.S.

    1983-01-01

    The suitability of a site for the shallow land burial of low-level waste is evaluated by an environmental-pathways analysis. The environmental-pathways analysis considers the probable paths for the transport of contamination to man and models the long-term transport of contamination to determine the resulting dose-to-man. The model of the long-term transport of contamination is developed for a proposed site using data obtained from a comprehensive laboratory and field investigation. The proposed site is located at the US Department of Energy Portsmouth Reservation, Piketon, Ohio and is planned to accept low-level radioactive waste generated by the enrichment of uranium. Laboratory studies were performed to characterize the waste and determine the wastes' leaching and retardation characteristics with site soils and groundwater. Comprehensive drilling, sampling and laboratory investigations were performed to provide the necessary information for interpreting the site's geology and hydrology. Field tests were performed to further quantify the site's hydrology. The pathway of greatest concern is the migration of contaminated groundwater and subsequent consumption by man. This pathway was modeled using a numerical simulation of the long-term transport of contamination. Conservative scenarios were developed for leachate generation and migration through the geohydrologic system. The dose-to-man determined from the pathways analysis formed the basis for evaluating site acceptability and providing recommendations for site design and development

  2. Environmental pathways analysis for evaluation of a low-level waste disposal site

    International Nuclear Information System (INIS)

    Lee, D.W.; Ketelle, R.H.; Pin, F.G.; Hill, G.S.

    1984-01-01

    The suitability of a site for the shallow land burial of low-level waste is evaluated by an environmental pathways analysis. The environmental pathways analysis considers the probable paths for the transport of contamination to man and models the long-term transport of contamination to determine the resulting dose to man. The model of the long-term transport of contamination is developed for a proposed site using data obtained from a comprehensive laboratory and field investigation. The proposed site is located at the US Department of Energy Portsmouth Reservation, Piketon, Ohio, and is planned to accept low-level radioactive waste generated by the enrichment of uranium. Laboratory studies were performed to characterize the waste and determine the wastes' leaching and retardation characteristics with site soils and groundwater. Comprehensive drilling, sampling and laboratory investigations were performed to provide the necessary information for interpreting the site's geology and hydrology. Field tests were performed to further quantify the site's hydrology. The pathway of greatest concern is the migration of contaminated groundwater and subsequent consumption by man. This pathway was modelled using a numerical simulation of the long-term transport of contamination. Conservative scenarios were developed for leachate generation and migration through the geohydrologic system. The dose to man determined from the pathways analysis formed the basis for evaluating site acceptability and providing recommendations for site design and development. (author)

  3. Hydrologic Analysis of Fort Leonard Wood, Missouri

    Science.gov (United States)

    2015-08-01

    drainage areas are different, hydrological analysis will be conducted on the two basins individually. The results of the two analyses will be combined to...ER D C TR -1 5- 4 Environmental Quality and Installations Hydrologic Analysis of Fort Leonard Wood, Missouri En gi ne er R es ea rc h...Environmental Quality and Installations ERDC TR-15-4 August 2015 Hydrologic Analysis of Fort Leonard Wood, Missouri Michael L. Follum, Darla C. McVan

  4. [Gene method for inconsistent hydrological frequency calculation. 2: Diagnosis system of hydrological genes and method of hydrological moment genes with inconsistent characters].

    Science.gov (United States)

    Xie, Ping; Zhao, Jiang Yan; Wu, Zi Yi; Sang, Yan Fang; Chen, Jie; Li, Bin Bin; Gu, Hai Ting

    2018-04-01

    The analysis of inconsistent hydrological series is one of the major problems that should be solved for engineering hydrological calculation in changing environment. In this study, the diffe-rences of non-consistency and non-stationarity were analyzed from the perspective of composition of hydrological series. The inconsistent hydrological phenomena were generalized into hydrological processes with inheritance, variability and evolution characteristics or regulations. Furthermore, the hydrological genes were identified following the theory of biological genes, while their inheritance bases and variability bases were determined based on composition of hydrological series under diffe-rent time scales. To identify and test the components of hydrological genes, we constructed a diagnosis system of hydrological genes. With the P-3 distribution as an example, we described the process of construction and expression of the moment genes to illustrate the inheritance, variability and evolution principles of hydrological genes. With the annual minimum 1-month runoff series of Yunjinghong station in Lancangjiang River basin as an example, we verified the feasibility and practicability of hydrological gene theory for the calculation of inconsistent hydrological frequency. The results showed that the method could be used to reveal the evolution of inconsistent hydrological series. Therefore, it provided a new research pathway for engineering hydrological calculation in changing environment and an essential reference for the assessment of water security.

  5. Controls on shallow landslide initiation: Diverse hydrologic pathways, 3D failure geometries, and unsaturated soil suctions

    Science.gov (United States)

    Reid, Mark; Iverson, Richard; Brien, Dianne; Iverson, Neal; LaHusen, Richard; Logan, Matthew

    2017-04-01

    Shallow landslides and ensuing debris flows are a common hazard worldwide, yet forecasting their initiation at a specific site is challenging. These challenges arise, in part, from diverse near-surface hydrologic pathways under different wetting conditions, 3D failure geometries, and the effects of suction in partially saturated soils. Simplistic hydrologic models typically used for regional hazard assessment disregard these complexities. As an alterative to field studies where the effects of these governing factors can be difficult to isolate, we used the USGS debris-flow flume to conduct controlled, field-scale landslide initiation experiments. Using overhead sprinklers or groundwater injectors on the flume bed, we triggered failures using three different wetting conditions: groundwater inflow from below, prolonged moderate-intensity precipitation, and bursts of high-intensity precipitation. Failures occurred in 6 m3 (0.65-m thick and 2-m wide) prisms of loamy sand on a 31° slope; these field-scale failures enabled realistic incorporation of nonlinear scale-dependent effects such as soil suction. During the experiments, we monitored soil deformation, variably saturated pore pressures, and moisture changes using ˜50 sensors sampling at 20 Hz. From ancillary laboratory tests, we determined shear strength, saturated hydraulic conductivities, and unsaturated moisture retention characteristics. The three different wetting conditions noted above led to different hydrologic pathways and influenced instrumental responses and failure timing. During groundwater injection, pore-water pressures increased from the bed of the flume upwards into the sediment, whereas prolonged moderate infiltration wet the sediment from the ground surface downward. In both cases, pore pressures acting on the impending failure surface slowly rose until abrupt failure. In contrast, a burst of intense sprinkling caused rapid failure without precursory development of widespread positive pore

  6. Analysis of Hydrologic Properties Data

    International Nuclear Information System (INIS)

    Liu, H.H.; Ahlers, C.F.

    2001-01-01

    The purpose of this Analysis/Model Report (AMR) is to describe the methods used to determine hydrologic properties based on the available field data from the unsaturated zone at Yucca Mountain, Nevada. This is in accordance with the AMR Development Plan (DP) for U0090 Analysis of Hydrologic Properties Data (CRWMS M and O 1999c). Fracture and matrix properties are developed by compiling and analyzing available survey data from the Exploratory Studies Facility (ESF), Cross Drift of Enhanced Characterization of Repository Block (ECRB), and/or boreholes; air injection testing data from surface boreholes and from boreholes in ESF; in-situ measurements of water potential; and data from laboratory testing of core samples

  7. Identification of hydrologic and geochemical pathways using high frequency sampling, REE aqueous sampling and soil characterization at Koiliaris Critical Zone Observatory, Crete

    Energy Technology Data Exchange (ETDEWEB)

    Moraetis, Daniel, E-mail: moraetis@mred.tuc.gr [Department of Environmental Engineering, Technical University of Crete, 73100 Chania (Greece); Stamati, Fotini; Kotronakis, Manolis; Fragia, Tasoula; Paranychnianakis, Nikolaos; Nikolaidis, Nikolaos P. [Department of Environmental Engineering, Technical University of Crete, 73100 Chania (Greece)

    2011-06-15

    Highlights: > Identification of hydrological and geochemical pathways within a complex watershed. > Water increased N-NO{sub 3} concentration and E.C. values during flash flood events. > Soil degradation and impact on water infiltration within the Koiliaris watershed. > Analysis of Rare Earth Elements in water bodies for identification of karstic water. - Abstract: Koiliaris River watershed is a Critical Zone Observatory that represents severely degraded soils due to intensive agricultural activities and biophysical factors. It has typical Mediterranean soils under the imminent threat of desertification which is expected to intensify due to projected climate change. High frequency hydro-chemical monitoring with targeted sampling for Rare Earth Elements (REE) analysis of different water bodies and geochemical characterization of soils were used for the identification of hydrologic and geochemical pathways. The high frequency monitoring of water chemical data highlighted the chemical alterations of water in Koiliaris River during flash flood events. Soil physical and chemical characterization surveys were used to identify erodibility patterns within the watershed and the influence of soils on surface and ground water chemistry. The methodology presented can be used to identify the impacts of degraded soils to surface and ground water quality as well as in the design of methods to minimize the impacts of land use practices.

  8. Stochastic time series analysis of hydrology data for water resources

    Science.gov (United States)

    Sathish, S.; Khadar Babu, S. K.

    2017-11-01

    The prediction to current publication of stochastic time series analysis in hydrology and seasonal stage. The different statistical tests for predicting the hydrology time series on Thomas-Fiering model. The hydrology time series of flood flow have accept a great deal of consideration worldwide. The concentration of stochastic process areas of time series analysis method are expanding with develop concerns about seasonal periods and global warming. The recent trend by the researchers for testing seasonal periods in the hydrologic flowseries using stochastic process on Thomas-Fiering model. The present article proposed to predict the seasonal periods in hydrology using Thomas-Fiering model.

  9. Hydrological analysis in R: Topmodel and beyond

    Science.gov (United States)

    Buytaert, W.; Reusser, D.

    2011-12-01

    R is quickly gaining popularity in the hydrological sciences community. The wide range of statistical and mathematical functionality makes it an excellent tool for data analysis, modelling and uncertainty analysis. Topmodel was one of the first hydrological models being implemented as an R package and distributed through R's own distribution network CRAN. This facilitated pre- and postprocessing of data such as parameter sampling, calculation of prediction bounds, and advanced visualisation. However, apart from these basic functionalities, the package did not use many of the more advanced features of the R environment, especially from R's object oriented functionality. With R's increasing expansion in arenas such as high performance computing, big data analysis, and cloud services, we revisit the topmodel package, and use it as an example of how to build and deploy the next generation of hydrological models. R provides a convenient environment and attractive features to build and couple hydrological - and in extension other environmental - models, to develop flexible and effective data assimilation strategies, and to take the model beyond the individual computer by linking into cloud services for both data provision and computing. However, in order to maximise the benefit of these approaches, it will be necessary to adopt standards and ontologies for model interaction and information exchange. Some of those are currently being developed, such as the OGC web processing standards, while other will need to be developed.

  10. Hydrological Response and Complex Impact Pathways of the 2015/2016 El Niño in Eastern and Southern Africa

    Science.gov (United States)

    Siderius, C.; Gannon, K. E.; Ndiyoi, M.; Opere, A.; Batisani, N.; Olago, D.; Pardoe, J.; Conway, D.

    2018-01-01

    The 2015/2016 El Niño has been classified as one of the three most severe on record. El Niño teleconnections are commonly associated with droughts in southern Africa and high precipitation in eastern Africa. Despite their relatively frequent occurrence, evidence for their hydrological effects and impacts beyond agriculture is limited. We examine the hydrological response and impact pathways of the 2015/2016 El Niño in eastern and southern Africa, focusing on Botswana, Kenya, and Zambia. We use in situ and remotely sensed time series of precipitation, river flow, and lake levels complemented by qualitative insights from interviews with key organizations in each country about awareness, impacts, and responses. Our results show that drought conditions prevailed in large parts of southern Africa, reducing runoff and contributing to unusually low lake levels in Botswana and Zambia. Key informants characterized this El Niño through record high temperatures and water supply disruption in Botswana and through hydroelectric load shedding in Zambia. Warnings of flood risk in Kenya were pronounced, but the El Niño teleconnection did not materialize as expected in 2015/2016. Extreme precipitation was limited and caused localized impacts. The hydrological impacts in southern Africa were severe and complex, strongly exacerbated by dry antecedent conditions, recent changes in exposure and sensitivity and management decisions. Improved understanding of hydrological responses and the complexity of differing impact pathways can support design of more adaptive, region-specific management strategies.

  11. Nonstationary Hydrological Frequency Analysis: Theoretical Methods and Application Challenges

    Science.gov (United States)

    Xiong, L.

    2014-12-01

    Because of its great implications in the design and operation of hydraulic structures under changing environments (either climate change or anthropogenic changes), nonstationary hydrological frequency analysis has become so important and essential. Two important achievements have been made in methods. Without adhering to the consistency assumption in the traditional hydrological frequency analysis, the time-varying probability distribution of any hydrological variable can be established by linking the distribution parameters to some covariates such as time or physical variables with the help of some powerful tools like the Generalized Additive Model of Location, Scale and Shape (GAMLSS). With the help of copulas, the multivariate nonstationary hydrological frequency analysis has also become feasible. However, applications of the nonstationary hydrological frequency formula to the design and operation of hydraulic structures for coping with the impacts of changing environments in practice is still faced with many challenges. First, the nonstationary hydrological frequency formulae with time as covariate could only be extrapolated for a very short time period beyond the latest observation time, because such kind of formulae is not physically constrained and the extrapolated outcomes could be unrealistic. There are two physically reasonable methods that can be used for changing environments, one is to directly link the quantiles or the distribution parameters to some measureable physical factors, and the other is to use the derived probability distributions based on hydrological processes. However, both methods are with a certain degree of uncertainty. For the design and operation of hydraulic structures under changing environments, it is recommended that design results of both stationary and nonstationary methods be presented together and compared with each other, to help us understand the potential risks of each method.

  12. A Bayesian Analysis of the Flood Frequency Hydrology Concept

    Science.gov (United States)

    2016-02-01

    ERDC/CHL CHETN-X-1 February 2016 Approved for public release; distribution is unlimited. A Bayesian Analysis of the Flood Frequency Hydrology ...flood frequency hydrology concept as a formal probabilistic-based means by which to coherently combine and also evaluate the worth of different types...and development. INTRODUCTION: Merz and Blöschl (2008a,b) proposed the concept of flood frequency hydrology , which emphasizes the importance of

  13. Analysis of Geothermal Pathway in the Metamorphic Area, Northeastern Taiwan

    Science.gov (United States)

    Wang, C.; Wu, M. Y.; Song, S. R.; Lo, W.

    2016-12-01

    A quantitative measure by play fairway analysis in geothermal energy development is an important tool that can present the probability map of potential resources through the uncertainty studies in geology for early phase decision making purpose in the related industries. While source, pathway, and fluid are the three main geologic factors in traditional geothermal systems, identifying the heat paths is critical to reduce drilling cost. Taiwan is in East Asia and the western edge of Pacific Ocean, locating on the convergent boundary of Eurasian Plate and Philippine Sea Plate with many earthquake activities. This study chooses a metamorphic area in the western corner of Yi-Lan plain in northeastern Taiwan with high geothermal potential and several existing exploration sites. Having high subsurface temperature gradient from the mountain belts, and plenty hydrologic systems through thousands of millimeters annual precipitation that would bring up heats closer to the surface, current geothermal conceptual model indicates the importance of pathway distribution which affects the possible concentration of extractable heat location. The study conducts surface lineation analysis using analytic hierarchy process to determine weights among various fracture types for their roles in geothermal pathways, based on the information of remote sensing data, published geologic maps and field work measurements, to produce regional fracture distribution probability map. The results display how the spatial distribution of pathways through various fractures could affect geothermal systems, identify the geothermal plays using statistical data analysis, and compare against the existing drilling data.

  14. Identifying and assessing uncertainty in hydrological pathways: a novel approach to end member mixing in a Scottish agricultural catchment

    Science.gov (United States)

    Soulsby, C.; Petry, J.; Brewer, M. J.; Dunn, S. M.; Ott, B.; Malcolm, I. A.

    2003-04-01

    A hydrograph separation based upon end member mixing was carried out to assess the relative importance of the hydrological pathways providing the main sources of runoff during five storm events in a 14.5 km 2 agricultural catchment in north east Scotland. The method utilised event specific end member chemistries to differentiate three catchment-scale hydrological pathways on the basis of observed Si and NO 3-N concentrations in sampled source waters. These were overland flow (OF) (low Si and intermediate NO 3-N); subsurface storm flow (high Si and high NO 3-N) and groundwater flow (high Si and intermediate NO 3-N). The hydrograph separation explicitly accounted for uncertainty in the spatial and temporal variation in end member chemistry using Bayesian statistical methods which assumed that each end member arose from a bivariate normal distribution whose mean vectors and co-variance matrices could be estimated. Markov Chain-Monte Carlo methods were used to model the average and 95 percentile maximum and minimum contributions that each end member made to stream water samples during storm events. Although there is large uncertainty over the contributions of each end member to specific events, the analysis produced hydrograph separations that were broadly believable on the basis of hydrometric observations in the catchment. Moreover, by using event specific end member compositions, the method appeared sensitive to the unique combination of event characteristics, antecedent conditions and seasonality in terms of producing feasible separations for very different events. It is concluded that OF generally dominates the storm peak and provides the main flow path by which P is transferred to stream channels during storm events, whilst subsurface storm flows usually dominate the storm hydrograph volumetrically and route NO 3-rich soil water into streams. Consequently, nutrient enrichment in such streams is largely mediated by event-based hydrological flow paths, a finding

  15. Information on Hydrologic Conceptual Models, Parameters, Uncertainty Analysis, and Data Sources for Dose Assessments at Decommissioning Sites

    International Nuclear Information System (INIS)

    Meyer, Philip D.; Gee, Glendon W.; Nicholson, Thomas J.

    1999-01-01

    This report addresses issues related to the analysis of uncertainty in dose assessments conducted as part of decommissioning analyses. The analysis is limited to the hydrologic aspects of the exposure pathway involving infiltration of water at the ground surface, leaching of contaminants, and transport of contaminants through the groundwater to a point of exposure. The basic conceptual models and mathematical implementations of three dose assessment codes are outlined along with the site-specific conditions under which the codes may provide inaccurate, potentially nonconservative results. In addition, the hydrologic parameters of the codes are identified and compared. A methodology for parameter uncertainty assessment is outlined that considers the potential data limitations and modeling needs of decommissioning analyses. This methodology uses generic parameter distributions based on national or regional databases, sensitivity analysis, probabilistic modeling, and Bayesian updating to incorporate site-specific information. Data sources for best-estimate parameter values and parameter uncertainty information are also reviewed. A follow-on report will illustrate the uncertainty assessment methodology using decommissioning test cases

  16. Information on Hydrologic Conceptual Models, Parameters, Uncertainty Analysis, and Data Sources for Dose Assessments at Decommissioning Sites

    International Nuclear Information System (INIS)

    Meyer D, Philip; Gee W, Glendon

    2000-01-01

    This report addresses issues related to the analysis of uncertainty in dose assessments conducted as part of decommissioning analyses. The analysis is limited to the hydrologic aspects of the exposure pathway involving infiltration of water at the ground surface, leaching of contaminants, and transport of contaminants through the groundwater to a point of exposure. The basic conceptual models and mathematical implementations of three dose assessment codes are outlined along with the site-specific conditions under which the codes may provide inaccurate, potentially nonconservative results. In addition, the hydrologic parameters of the codes are identified and compared. A methodology for parameter uncertainty assessment is outlined that considers the potential data limitations and modeling needs of decommissioning analyses. This methodology uses generic parameter distributions based on national or regional databases, sensitivity analysis, probabilistic modeling, and Bayesian updating to incorporate site-specific information. Data sources for best-estimate parameter values and parameter uncertainty information are also reviewed. A follow-on report will illustrate the uncertainty assessment methodology using decommissioning test cases

  17. An approach to quantum-computational hydrologic inverse analysis.

    Science.gov (United States)

    O'Malley, Daniel

    2018-05-02

    Making predictions about flow and transport in an aquifer requires knowledge of the heterogeneous properties of the aquifer such as permeability. Computational methods for inverse analysis are commonly used to infer these properties from quantities that are more readily observable such as hydraulic head. We present a method for computational inverse analysis that utilizes a type of quantum computer called a quantum annealer. While quantum computing is in an early stage compared to classical computing, we demonstrate that it is sufficiently developed that it can be used to solve certain subsurface flow problems. We utilize a D-Wave 2X quantum annealer to solve 1D and 2D hydrologic inverse problems that, while small by modern standards, are similar in size and sometimes larger than hydrologic inverse problems that were solved with early classical computers. Our results and the rapid progress being made with quantum computing hardware indicate that the era of quantum-computational hydrology may not be too far in the future.

  18. Network analysis applications in hydrology

    Science.gov (United States)

    Price, Katie

    2017-04-01

    Applied network theory has seen pronounced expansion in recent years, in fields such as epidemiology, computer science, and sociology. Concurrent development of analytical methods and frameworks has increased possibilities and tools available to researchers seeking to apply network theory to a variety of problems. While water and nutrient fluxes through stream systems clearly demonstrate a directional network structure, the hydrological applications of network theory remain under­explored. This presentation covers a review of network applications in hydrology, followed by an overview of promising network analytical tools that potentially offer new insights into conceptual modeling of hydrologic systems, identifying behavioral transition zones in stream networks and thresholds of dynamical system response. Network applications were tested along an urbanization gradient in Atlanta, Georgia, USA. Peachtree Creek and Proctor Creek. Peachtree Creek contains a nest of five long­term USGS streamflow and water quality gages, allowing network application of long­term flow statistics. The watershed spans a range of suburban and heavily urbanized conditions. Summary flow statistics and water quality metrics were analyzed using a suite of network analysis techniques, to test the conceptual modeling and predictive potential of the methodologies. Storm events and low flow dynamics during Summer 2016 were analyzed using multiple network approaches, with an emphasis on tomogravity methods. Results indicate that network theory approaches offer novel perspectives for understanding long­ term and event­based hydrological data. Key future directions for network applications include 1) optimizing data collection, 2) identifying "hotspots" of contaminant and overland flow influx to stream systems, 3) defining process domains, and 4) analyzing dynamic connectivity of various system components, including groundwater­surface water interactions.

  19. Digital Hydrologic Networks Supporting Applications Related to Spatially Referenced Regression Modeling

    Science.gov (United States)

    Brakebill, J.W.; Wolock, D.M.; Terziotti, S.E.

    2011-01-01

    Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based/statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling. ?? 2011 American Water Resources Association. This article is a U.S. Government work and is in the public domain in the USA.

  20. Hydrologic classification of rivers based on cluster analysis of dimensionless hydrologic signatures: Applications for environmental instream flows

    Science.gov (United States)

    Praskievicz, S. J.; Luo, C.

    2017-12-01

    Classification of rivers is useful for a variety of purposes, such as generating and testing hypotheses about watershed controls on hydrology, predicting hydrologic variables for ungaged rivers, and setting goals for river management. In this research, we present a bottom-up (based on machine learning) river classification designed to investigate the underlying physical processes governing rivers' hydrologic regimes. The classification was developed for the entire state of Alabama, based on 248 United States Geological Survey (USGS) stream gages that met criteria for length and completeness of records. Five dimensionless hydrologic signatures were derived for each gage: slope of the flow duration curve (indicator of flow variability), baseflow index (ratio of baseflow to average streamflow), rising limb density (number of rising limbs per unit time), runoff ratio (ratio of long-term average streamflow to long-term average precipitation), and streamflow elasticity (sensitivity of streamflow to precipitation). We used a Bayesian clustering algorithm to classify the gages, based on the five hydrologic signatures, into distinct hydrologic regimes. We then used classification and regression trees (CART) to predict each gaged river's membership in different hydrologic regimes based on climatic and watershed variables. Using existing geospatial data, we applied the CART analysis to classify ungaged streams in Alabama, with the National Hydrography Dataset Plus (NHDPlus) catchment (average area 3 km2) as the unit of classification. The results of the classification can be used for meeting management and conservation objectives in Alabama, such as developing statewide standards for environmental instream flows. Such hydrologic classification approaches are promising for contributing to process-based understanding of river systems.

  1. Uncertainty analysis of hydrological modeling in a tropical area using different algorithms

    Science.gov (United States)

    Rafiei Emam, Ammar; Kappas, Martin; Fassnacht, Steven; Linh, Nguyen Hoang Khanh

    2018-01-01

    Hydrological modeling outputs are subject to uncertainty resulting from different sources of errors (e.g., error in input data, model structure, and model parameters), making quantification of uncertainty in hydrological modeling imperative and meant to improve reliability of modeling results. The uncertainty analysis must solve difficulties in calibration of hydrological models, which further increase in areas with data scarcity. The purpose of this study is to apply four uncertainty analysis algorithms to a semi-distributed hydrological model, quantifying different source of uncertainties (especially parameter uncertainty) and evaluate their performance. In this study, the Soil and Water Assessment Tools (SWAT) eco-hydrological model was implemented for the watershed in the center of Vietnam. The sensitivity of parameters was analyzed, and the model was calibrated. The uncertainty analysis for the hydrological model was conducted based on four algorithms: Generalized Likelihood Uncertainty Estimation (GLUE), Sequential Uncertainty Fitting (SUFI), Parameter Solution method (ParaSol) and Particle Swarm Optimization (PSO). The performance of the algorithms was compared using P-factor and Rfactor, coefficient of determination (R 2), the Nash Sutcliffe coefficient of efficiency (NSE) and Percent Bias (PBIAS). The results showed the high performance of SUFI and PSO with P-factor>0.83, R-factor 0.91, NSE>0.89, and 0.18analysis. Indeed, the uncertainty analysis must be accounted when the outcomes of the model use for policy or management decisions.

  2. HYDROLOGIC ANALYSIS, HONOLULU COUNTY, HI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  3. HYDROLOGIC ANALYSIS, MONO COUNTY, CA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  4. HYDROLOGIC ANALYSIS, EDGEFIELD COUNTY, SC

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  5. A coupled stochastic rainfall-evapotranspiration model for hydrological impact analysis

    Science.gov (United States)

    Pham, Minh Tu; Vernieuwe, Hilde; De Baets, Bernard; Verhoest, Niko E. C.

    2018-02-01

    A hydrological impact analysis concerns the study of the consequences of certain scenarios on one or more variables or fluxes in the hydrological cycle. In such an exercise, discharge is often considered, as floods originating from extremely high discharges often cause damage. Investigating the impact of extreme discharges generally requires long time series of precipitation and evapotranspiration to be used to force a rainfall-runoff model. However, such kinds of data may not be available and one should resort to stochastically generated time series, even though the impact of using such data on the overall discharge, and especially on the extreme discharge events, is not well studied. In this paper, stochastically generated rainfall and corresponding evapotranspiration time series, generated by means of vine copulas, are used to force a simple conceptual hydrological model. The results obtained are comparable to the modelled discharge using observed forcing data. Yet, uncertainties in the modelled discharge increase with an increasing number of stochastically generated time series used. Notwithstanding this finding, it can be concluded that using a coupled stochastic rainfall-evapotranspiration model has great potential for hydrological impact analysis.

  6. Pathway cross-talk network analysis identifies critical pathways in neonatal sepsis.

    Science.gov (United States)

    Meng, Yu-Xiu; Liu, Quan-Hong; Chen, Deng-Hong; Meng, Ying

    2017-06-01

    Despite advances in neonatal care, sepsis remains a major cause of morbidity and mortality in neonates worldwide. Pathway cross-talk analysis might contribute to the inference of the driving forces in bacterial sepsis and facilitate a better understanding of underlying pathogenesis of neonatal sepsis. This study aimed to explore the critical pathways associated with the progression of neonatal sepsis by the pathway cross-talk analysis. By integrating neonatal transcriptome data with known pathway data and protein-protein interaction data, we systematically uncovered the disease pathway cross-talks and constructed a disease pathway cross-talk network for neonatal sepsis. Then, attract method was employed to explore the dysregulated pathways associated with neonatal sepsis. To determine the critical pathways in neonatal sepsis, rank product (RP) algorithm, centrality analysis and impact factor (IF) were introduced sequentially, which synthetically considered the differential expression of genes and pathways, pathways cross-talks and pathway parameters in the network. The dysregulated pathways with the highest IF values as well as RPpathways in neonatal sepsis. By integrating three kinds of data, only 6919 common genes were included to perform the pathway cross-talk analysis. By statistic analysis, a total of 1249 significant pathway cross-talks were selected to construct the pathway cross-talk network. Moreover, 47 dys-regulated pathways were identified via attract method, 20 pathways were identified under RPpathways with the highest IF were also screened from the pathway cross-talk network. Among them, we selected 8 common pathways, i.e. critical pathways. In this study, we systematically tracked 8 critical pathways involved in neonatal sepsis by integrating attract method and pathway cross-talk network. These pathways might be responsible for the host response in infection, and of great value for advancing diagnosis and therapy of neonatal sepsis. Copyright © 2017

  7. Uncertainty Assessment of Hydrological Frequency Analysis Using Bootstrap Method

    Directory of Open Access Journals (Sweden)

    Yi-Ming Hu

    2013-01-01

    Full Text Available The hydrological frequency analysis (HFA is the foundation for the hydraulic engineering design and water resources management. Hydrological extreme observations or samples are the basis for HFA; the representativeness of a sample series to the population distribution is extremely important for the estimation reliability of the hydrological design value or quantile. However, for most of hydrological extreme data obtained in practical application, the size of the samples is usually small, for example, in China about 40~50 years. Generally, samples with small size cannot completely display the statistical properties of the population distribution, thus leading to uncertainties in the estimation of hydrological design values. In this paper, a new method based on bootstrap is put forward to analyze the impact of sampling uncertainty on the design value. By bootstrap resampling technique, a large number of bootstrap samples are constructed from the original flood extreme observations; the corresponding design value or quantile is estimated for each bootstrap sample, so that the sampling distribution of design value is constructed; based on the sampling distribution, the uncertainty of quantile estimation can be quantified. Compared with the conventional approach, this method provides not only the point estimation of a design value but also quantitative evaluation on uncertainties of the estimation.

  8. HYDROLOGIC ANALYSIS, SANTA CRUZ COUNTY, CA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  9. A sensitivity analysis of regional and small watershed hydrologic models

    Science.gov (United States)

    Ambaruch, R.; Salomonson, V. V.; Simmons, J. W.

    1975-01-01

    Continuous simulation models of the hydrologic behavior of watersheds are important tools in several practical applications such as hydroelectric power planning, navigation, and flood control. Several recent studies have addressed the feasibility of using remote earth observations as sources of input data for hydrologic models. The objective of the study reported here was to determine how accurately remotely sensed measurements must be to provide inputs to hydrologic models of watersheds, within the tolerances needed for acceptably accurate synthesis of streamflow by the models. The study objective was achieved by performing a series of sensitivity analyses using continuous simulation models of three watersheds. The sensitivity analysis showed quantitatively how variations in each of 46 model inputs and parameters affect simulation accuracy with respect to five different performance indices.

  10. Multivariate stochastic analysis for Monthly hydrological time series at Cuyahoga River Basin

    Science.gov (United States)

    zhang, L.

    2011-12-01

    Copula has become a very powerful statistic and stochastic methodology in case of the multivariate analysis in Environmental and Water resources Engineering. In recent years, the popular one-parameter Archimedean copulas, e.g. Gumbel-Houggard copula, Cook-Johnson copula, Frank copula, the meta-elliptical copula, e.g. Gaussian Copula, Student-T copula, etc. have been applied in multivariate hydrological analyses, e.g. multivariate rainfall (rainfall intensity, duration and depth), flood (peak discharge, duration and volume), and drought analyses (drought length, mean and minimum SPI values, and drought mean areal extent). Copula has also been applied in the flood frequency analysis at the confluences of river systems by taking into account the dependence among upstream gauge stations rather than by using the hydrological routing technique. In most of the studies above, the annual time series have been considered as stationary signal which the time series have been assumed as independent identically distributed (i.i.d.) random variables. But in reality, hydrological time series, especially the daily and monthly hydrological time series, cannot be considered as i.i.d. random variables due to the periodicity existed in the data structure. Also, the stationary assumption is also under question due to the Climate Change and Land Use and Land Cover (LULC) change in the fast years. To this end, it is necessary to revaluate the classic approach for the study of hydrological time series by relaxing the stationary assumption by the use of nonstationary approach. Also as to the study of the dependence structure for the hydrological time series, the assumption of same type of univariate distribution also needs to be relaxed by adopting the copula theory. In this paper, the univariate monthly hydrological time series will be studied through the nonstationary time series analysis approach. The dependence structure of the multivariate monthly hydrological time series will be

  11. Real-Time Analysis and Forecasting of Multisite River Flow Using a Distributed Hydrological Model

    Directory of Open Access Journals (Sweden)

    Mingdong Sun

    2014-01-01

    Full Text Available A spatial distributed hydrological forecasting system was developed to promote the analysis of river flow dynamic state in a large basin. The research presented the real-time analysis and forecasting of multisite river flow in the Nakdong River Basin using a distributed hydrological model with radar rainfall forecast data. A real-time calibration algorithm of hydrological distributed model was proposed to investigate the particular relationship between the water storage and basin discharge. Demonstrate the approach of simulating multisite river flow using a distributed hydrological model couple with real-time calibration and forecasting of multisite river flow with radar rainfall forecasts data. The hydrographs and results exhibit that calibrated flow simulations are very approximate to the flow observation at all sites and the accuracy of forecasting flow is gradually decreased with lead times extending from 1 hr to 3 hrs. The flow forecasts are lower than the flow observation which is likely caused by the low estimation of radar rainfall forecasts. The research has well demonstrated that the distributed hydrological model is readily applicable for multisite real-time river flow analysis and forecasting in a large basin.

  12. Spatially explicit scenario analysis for hydrologic services in an urbanizing agricultural watershed

    Science.gov (United States)

    Qiu, J.; Booth, E.; Carpenter, S. R.; Turner, M.

    2013-12-01

    freshwater supply and surface water quality were sustained or enhanced overall, these hydrologic services declined in ~60% and 20% of the landscape, respectively. The greatest improvement for most hydrologic services corresponded to areas of restored wetland, forest and perennial crops, which were less vulnerable to future degradation. In the Investment in Innovation scenario, freshwater supply declined in almost the entire watershed; improvement of surface water quality and flood regulation occurred mainly in urban areas, where highly engineered systems made them less vulnerable. Overall, our results indicated that hydrologic services will respond differently to future climate and land-use change, and sustaining one may involve tradeoffs of another. Technological progress can conserve particular services but might not be the panacea for the future. How society reacts in the face of changes can have an important role in determining the pathways to the future and the provision and spatial patterns of ecosystem services.

  13. Monetary valuation with impact pathway analysis: Benefits of reducing nitrate leaching in European Catchments

    DEFF Research Database (Denmark)

    Andersen, Mikael Skou; Hansen, Morten Søes; Carstensen, Jacob

    2011-01-01

    Integrated assessment frameworks which can account comprehensively for the benefits related to water quality improvements have not yet been established. The main challenge is to link economic valuation with hydrological data in an appropriate way.We here explore the so-called ‘impact pathway...... approach’ as a novel analytical method in the area ofwater management. It can identify site- and catchment-specific benefits associated with management measures by linking economic and hydrological data through consecutive modelling stages, allowing for monetization of specific end point effects...

  14. Pathway enrichment analysis approach based on topological structure and updated annotation of pathway.

    Science.gov (United States)

    Yang, Qian; Wang, Shuyuan; Dai, Enyu; Zhou, Shunheng; Liu, Dianming; Liu, Haizhou; Meng, Qianqian; Jiang, Bin; Jiang, Wei

    2017-08-16

    Pathway enrichment analysis has been widely used to identify cancer risk pathways, and contributes to elucidating the mechanism of tumorigenesis. However, most of the existing approaches use the outdated pathway information and neglect the complex gene interactions in pathway. Here, we first reviewed the existing widely used pathway enrichment analysis approaches briefly, and then, we proposed a novel topology-based pathway enrichment analysis (TPEA) method, which integrated topological properties and global upstream/downstream positions of genes in pathways. We compared TPEA with four widely used pathway enrichment analysis tools, including database for annotation, visualization and integrated discovery (DAVID), gene set enrichment analysis (GSEA), centrality-based pathway enrichment (CePa) and signaling pathway impact analysis (SPIA), through analyzing six gene expression profiles of three tumor types (colorectal cancer, thyroid cancer and endometrial cancer). As a result, we identified several well-known cancer risk pathways that could not be obtained by the existing tools, and the results of TPEA were more stable than that of the other tools in analyzing different data sets of the same cancer. Ultimately, we developed an R package to implement TPEA, which could online update KEGG pathway information and is available at the Comprehensive R Archive Network (CRAN): https://cran.r-project.org/web/packages/TPEA/. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  15. HydroClimATe: hydrologic and climatic analysis toolkit

    Science.gov (United States)

    Dickinson, Jesse; Hanson, Randall T.; Predmore, Steven K.

    2014-01-01

    The potential consequences of climate variability and climate change have been identified as major issues for the sustainability and availability of the worldwide water resources. Unlike global climate change, climate variability represents deviations from the long-term state of the climate over periods of a few years to several decades. Currently, rich hydrologic time-series data are available, but the combination of data preparation and statistical methods developed by the U.S. Geological Survey as part of the Groundwater Resources Program is relatively unavailable to hydrologists and engineers who could benefit from estimates of climate variability and its effects on periodic recharge and water-resource availability. This report documents HydroClimATe, a computer program for assessing the relations between variable climatic and hydrologic time-series data. HydroClimATe was developed for a Windows operating system. The software includes statistical tools for (1) time-series preprocessing, (2) spectral analysis, (3) spatial and temporal analysis, (4) correlation analysis, and (5) projections. The time-series preprocessing tools include spline fitting, standardization using a normal or gamma distribution, and transformation by a cumulative departure. The spectral analysis tools include discrete Fourier transform, maximum entropy method, and singular spectrum analysis. The spatial and temporal analysis tool is empirical orthogonal function analysis. The correlation analysis tools are linear regression and lag correlation. The projection tools include autoregressive time-series modeling and generation of many realizations. These tools are demonstrated in four examples that use stream-flow discharge data, groundwater-level records, gridded time series of precipitation data, and the Multivariate ENSO Index.

  16. Sensitivity analysis for hydrology and pesticide supply towards the river in SWAT

    Science.gov (United States)

    Holvoet, K.; van Griensven, A.; Seuntjens, P.; Vanrolleghem, P. A.

    The dynamic behaviour of pesticides in river systems strongly depends on varying climatological conditions and agricultural management practices. To describe this behaviour at the river-basin scale, integrated hydrological and water quality models are needed. A crucial step in understanding the various processes determining pesticide fate is to perform a sensitivity analysis. Sensitivity analysis for hydrology and pesticide supply in SWAT (Soil and Water Assessment Tool) will provide useful support for the development of a reliable hydrological model and will give insight in which parameters are most sensitive concerning pesticide supply towards rivers. The study was performed on the Nil catchment in Belgium. In this study we utilised an LH-OAT sensitivity analysis. The LH-OAT method combines the One-factor-At-a-Time (OAT) design and Latin Hypercube (LH) sampling by taking the Latin Hypercube samples as initial points for an OAT design. By means of the LH-OAT sensitivity analysis, the dominant hydrological parameters were determined and a reduction of the number of model parameters was performed. Dominant hydrological parameters were the curve number (CN2), the surface runoff lag (surlag), the recharge to deep aquifer (rchrg_dp) and the threshold depth of water in the shallow aquifer (GWQMN). Next, the selected parameters were estimated by manual calibration. Hereby, the Nash-Sutcliffe coefficient of efficiency improved from an initial value of -22.4 to +0.53. In the second part, sensitivity analyses were performed to provide insight in which parameters or model inputs contribute most to variance in pesticide output. The results of this study show that for the Nil catchment, hydrologic parameters are dominant in controlling pesticide predictions. The other parameter that affects pesticide concentrations in surface water is ‘apfp_pest’, which meaning was changed into a parameter that controls direct losses to the river system (e.g., through the clean up of spray

  17. Virtual hydrology observatory: an immersive visualization of hydrology modeling

    Science.gov (United States)

    Su, Simon; Cruz-Neira, Carolina; Habib, Emad; Gerndt, Andreas

    2009-02-01

    The Virtual Hydrology Observatory will provide students with the ability to observe the integrated hydrology simulation with an instructional interface by using a desktop based or immersive virtual reality setup. It is the goal of the virtual hydrology observatory application to facilitate the introduction of field experience and observational skills into hydrology courses through innovative virtual techniques that mimic activities during actual field visits. The simulation part of the application is developed from the integrated atmospheric forecast model: Weather Research and Forecasting (WRF), and the hydrology model: Gridded Surface/Subsurface Hydrologic Analysis (GSSHA). Both the output from WRF and GSSHA models are then used to generate the final visualization components of the Virtual Hydrology Observatory. The various visualization data processing techniques provided by VTK are 2D Delaunay triangulation and data optimization. Once all the visualization components are generated, they are integrated into the simulation data using VRFlowVis and VR Juggler software toolkit. VR Juggler is used primarily to provide the Virtual Hydrology Observatory application with fully immersive and real time 3D interaction experience; while VRFlowVis provides the integration framework for the hydrologic simulation data, graphical objects and user interaction. A six-sided CAVETM like system is used to run the Virtual Hydrology Observatory to provide the students with a fully immersive experience.

  18. Isotope hydrology: A historical overview of achievements

    International Nuclear Information System (INIS)

    1997-01-01

    The IAEA's efforts in the water sector cover all aspects of the three main categories of isotope methodologies, such as the use of radioactive isotopes as tracers for site-specific investigations related to water movement; the use of sealed radioactive sources for in-situ measurement of hydrological field parameters; and the use of naturally occurring isotopic species for the assessment and study of water occurrence, genesis and flow pathways/dynamics at regional-scale hydrological systems

  19. Evaluating Hydrologic Response of an Agricultural Watershed for Watershed Analysis

    Directory of Open Access Journals (Sweden)

    Manoj Kumar Jha

    2011-06-01

    Full Text Available This paper describes the hydrological assessment of an agricultural watershed in the Midwestern United States through the use of a watershed scale hydrologic model. The Soil and Water Assessment Tool (SWAT model was applied to the Maquoketa River watershed, located in northeast Iowa, draining an agriculture intensive area of about 5,000 km2. The inputs to the model were obtained from the Environmental Protection Agency’s geographic information/database system called Better Assessment Science Integrating Point and Nonpoint Sources (BASINS. Meteorological input, including precipitation and temperature from six weather stations located in and around the watershed, and measured streamflow data at the watershed outlet, were used in the simulation. A sensitivity analysis was performed using an influence coefficient method to evaluate surface runoff and baseflow variations in response to changes in model input hydrologic parameters. The curve number, evaporation compensation factor, and soil available water capacity were found to be the most sensitive parameters among eight selected parameters. Model calibration, facilitated by the sensitivity analysis, was performed for the period 1988 through 1993, and validation was performed for 1982 through 1987. The model was found to explain at least 86% and 69% of the variability in the measured streamflow data for calibration and validation periods, respectively. This initial hydrologic assessment will facilitate future modeling applications using SWAT to the Maquoketa River watershed for various watershed analyses, including watershed assessment for water quality management, such as total maximum daily loads, impacts of land use and climate change, and impacts of alternate management practices.

  20. Watershed hydrology. Chapter 7.

    Science.gov (United States)

    Elons S. Verry; Kenneth N. Brooks; Dale S. Nichols; Dawn R. Ferris; Stephen D. Sebestyen

    2011-01-01

    Watershed hydrology is determined by the local climate, land use, and pathways of water flow. At the Marcell Experimental Forest (MEF), streamflow is dominated by spring runoff events driven by snowmelt and spring rains common to the strongly continental climate of northern Minnesota. Snowmelt and rainfall in early spring saturate both mineral and organic soils and...

  1. Analysis of Hydrologic Properties Data

    Energy Technology Data Exchange (ETDEWEB)

    H. H. Liu

    2003-04-03

    This Model Report describes the methods used to determine hydrologic properties based on the available field data from the unsaturated zone (UZ) at Yucca Mountain, Nevada, and documents validation of the active fracture model (AFM). This work was planned in ''Technical Work Plan (TWP) for: Performance Assessment Unsaturated Zone'' (BSC 2002 [160819], Sections 1.10.2, 1.10.3, and 1.10.8). Fracture and matrix properties are developed by analyzing available survey data from the Exploratory Studies Facility (ESF), Cross Drift for Enhanced Characterization of Repository Block (ECRB), and/or boreholes; air injection testing data from surface boreholes and from boreholes in the ESF; and data from laboratory testing of core samples. The AFM is validated on the basis of experimental observations and theoretical developments. This report is a revision of an Analysis Model Report, under the same title, as a scientific analysis with Document Identifier number ANL-NBS-HS-000002 (BSC 2001 [159725]) that did not document activities to validate the AFM. The principal purpose of this work is to provide representative uncalibrated estimates of fracture and matrix properties for use in the model report ''Calibrated Properties Model'' (BSC 2003 [160240]). The present work also provides fracture geometry properties for generating dual permeability grids as documented in the Scientific Analysis Report, ''Development of Numerical Grids for UZ Flow and Transport Modeling'' (BSC 2003 [160109]). The resulting calibrated property sets and numerical grids from these reports will be used in the Unsaturated Zone Flow and Transport Process Model (UZ Model), and Total System Performance Assessment (TSPA) models. The fracture and matrix properties developed in this Model Report include: (1) Fracture properties (frequency, permeability, van Genuchten a and m parameters, aperture, porosity, and interface area) for each UZ Model layer; (2

  2. Use of environmental isotope techniques in groundwater hydrology

    International Nuclear Information System (INIS)

    Tirumalesh, K.; Shivanna, K.

    2009-01-01

    Environmental isotopes (stable and radioactive) have been used as tracers for investigating various hydrological problems. Wide variation in isotopic distribution ( 2 H, 13 C, 18 O, 15 N, 35 S, 3 H and 14 C) in the environment help in identifying the source, origin, pathways and processes affecting the system under consideration. In this article, a few Indian case studies covering some of the very important isotope applications in groundwater hydrology are briefly summarized. (author)

  3. Pathway analysis: State of the art

    Directory of Open Access Journals (Sweden)

    Miguel Angel eGarcía-Campos

    2015-12-01

    Full Text Available Pathway analysis is a set of widely used tools for research in life sciences intended to give meaning to high-throughput biological data. The methodology of these tools settles in the gathering and usage of knowledge that comprise biomolecular functioning, coupled with statistical testing and other algorithms. Despite their wide employment, pathway analysis foundations and overall background may not be fully understood, leading to misinterpretation of analysis results. This review attempts to comprise the fundamental knowledge to take into consideration when using pathway analysis as a hypothesis generation tool. We discuss the key elements that are part of these methodologies, their capabilities and current deficiencies. We also present an overview of current and all-time popular methods, highlighting different classes across them. In doing so, we show the exploding diversity of methods that pathway analysis encompasses, point out commonly overlooked caveats, and direct attention to a potential new class of methods that attempt to zoom the analysis scope to the sample scale.

  4. Statistical analysis of hydrologic data for Yucca Mountain

    International Nuclear Information System (INIS)

    Rutherford, B.M.; Hall, I.J.; Peters, R.R.; Easterling, R.G.; Klavetter, E.A.

    1992-02-01

    The geologic formations in the unsaturated zone at Yucca Mountain are currently being studied as the host rock for a potential radioactive waste repository. Data from several drill holes have been collected to provide the preliminary information needed for planning site characterization for the Yucca Mountain Project. Hydrologic properties have been measured on the core samples and the variables analyzed here are thought to be important in the determination of groundwater travel times. This report presents a statistical analysis of four hydrologic variables: saturated-matrix hydraulic conductivity, maximum moisture content, suction head, and calculated groundwater travel time. It is important to modelers to have as much information about the distribution of values of these variables as can be obtained from the data. The approach taken in this investigation is to (1) identify regions at the Yucca Mountain site that, according to the data, are distinctly different; (2) estimate the means and variances within these regions; (3) examine the relationships among the variables; and (4) investigate alternative statistical methods that might be applicable when more data become available. The five different functional stratigraphic units at three different locations are compared and grouped into relatively homogeneous regions. Within these regions, the expected values and variances associated with core samples of different sizes are estimated. The results provide a rough estimate of the distribution of hydrologic variables for small core sections within each region

  5. IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

    Science.gov (United States)

    Zhang, Fan; Drabier, Renee

    2012-01-01

    Next-Generation Sequencing (NGS) technologies and Genome-Wide Association Studies (GWAS) generate millions of reads and hundreds of datasets, and there is an urgent need for a better way to accurately interpret and distill such large amounts of data. Extensive pathway and network analysis allow for the discovery of highly significant pathways from a set of disease vs. healthy samples in the NGS and GWAS. Knowledge of activation of these processes will lead to elucidation of the complex biological pathways affected by drug treatment, to patient stratification studies of new and existing drug treatments, and to understanding the underlying anti-cancer drug effects. There are approximately 141 biological human pathway resources as of Jan 2012 according to the Pathguide database. However, most currently available resources do not contain disease, drug or organ specificity information such as disease-pathway, drug-pathway, and organ-pathway associations. Systematically integrating pathway, disease, drug and organ specificity together becomes increasingly crucial for understanding the interrelationships between signaling, metabolic and regulatory pathway, drug action, disease susceptibility, and organ specificity from high-throughput omics data (genomics, transcriptomics, proteomics and metabolomics). We designed the Integrated Pathway Analysis Database for Systematic Enrichment Analysis (IPAD, http://bioinfo.hsc.unt.edu/ipad), defining inter-association between pathway, disease, drug and organ specificity, based on six criteria: 1) comprehensive pathway coverage; 2) gene/protein to pathway/disease/drug/organ association; 3) inter-association between pathway, disease, drug, and organ; 4) multiple and quantitative measurement of enrichment and inter-association; 5) assessment of enrichment and inter-association analysis with the context of the existing biological knowledge and a "gold standard" constructed from reputable and reliable sources; and 6) cross-linking of

  6. Pathway analysis of IMC

    DEFF Research Database (Denmark)

    Skrypnyuk, Nataliya; Nielson, Flemming; Pilegaard, Henrik

    2009-01-01

    We present the ongoing work on the pathway analysis of a stochastic calculus. Firstly we present a particular stochastic calculus that we have chosen for our modeling - the Interactive Markov Chains calculus, IMC for short. After that we specify a few restrictions that we have introduced into the...... into the syntax of IMC in order to make our analysis feasible. Finally we describe the analysis itself together with several theoretical results that we have proved for it.......We present the ongoing work on the pathway analysis of a stochastic calculus. Firstly we present a particular stochastic calculus that we have chosen for our modeling - the Interactive Markov Chains calculus, IMC for short. After that we specify a few restrictions that we have introduced...

  7. Hydrologic monitoring and analysis in the Sundarbans mangrove ecosystem, Bangladesh

    Science.gov (United States)

    Wahid, Shahriar Md.; Babel, Mukand S.; Bhuiyan, Abdur Rahman

    2007-01-01

    SummaryThe unique habitat of the Sundarbans mangrove ecosystem is dependent upon the hydrological regime. Therefore, a comprehensive study to understand the hydrologic behaviour and the changes that have taken place due to anthropogenic activities in and around the area is fundamental to the management of natural resources and environment. In the past, ad hoc and uncoordinated efforts were made due to the inherent inaccessibility and high cost of data collection. The present article documents the results of the hydrologic monitoring, modelling and analysis in the Sundarbans. The study results show that the annual maximum tidal range has increased by about 0.75 m in the eastern and central parts during the last two decades. About 60% area remains in higher salinity condition (>20 ppt) for at least 1.5 months in a year. Organic pollution in the waterways is within the Environmental Quality Standard (EQS) of Bangladesh with the average Dissolved Oxygen (DO) of 5.99 mg/L. Total Ammonia, Nitrate (NO 3-N) and Phosphate (PO 4-P) level are present in sufficient quantity for the aquatic life to survive and are within EQS limit. Lead and Chromium occasionally exceed EQS limit especially along the large barge routes in the western part. The data and information presented in the paper will serve as a baseline for future hydrological and environmental studies.

  8. Northern hydrology and water resources in a changing environment

    International Nuclear Information System (INIS)

    Kane, D.L.

    1993-01-01

    The role that climatic change may play in altering various components of the hydrologic cycle in Arctic regions is discussed. The hydrologic setting of these regions is first described, noting the importance of subsurface freezing and thawing on hydrologic pathways and the lack of incorporation of soil freezing and thawing into climate models. Major processes of interest in the relation between climate change and hydrology are the timing and magnitude of fluxes entering and leaving a basin: precipitation, evaporation and transpiration, and runoff. The active layer of the soil could be drastically increased by only a few degrees of surface warming. The natural hydrologic cycle has considerable yearly variation, tending to mask any hydrologic changes caused by climatic change. There are too many unknowns at present for an adequate prediction of the impact of climate change on the hydrologic cycle. The biggest uncertainty is how the timing and quantity of precipitation is going to change. This quantity could be altered by any major changes in vegetation, which would be closely related to the amount of warming. In hydrologic scenarios where air temperature rises 4 degree C over 50 y, under stable, high, and low precipitation conditions, there are no significant changes in hydrologic response. 24 refs., 6 figs

  9. Gridded Surface Subsurface Hydrologic Analysis (GSSHA) User's Manual; Version 1.43 for Watershed Modeling System 6.1

    National Research Council Canada - National Science Library

    Downer, Charles W; Ogden, Fred L

    2006-01-01

    The need to simulate surface water flows in watersheds with diverse runoff production mechanisms has led to the development of the physically-based hydrologic model Gridded Surface Subsurface Hydrologic Analysis (GSSHA...

  10. Parameterization and Uncertainty Analysis of SWAT model in Hydrological Simulation of Chaohe River Basin

    Science.gov (United States)

    Jie, M.; Zhang, J.; Guo, B. B.

    2017-12-01

    As a typical distributed hydrological model, the SWAT model also has a challenge in calibrating parameters and analysis their uncertainty. This paper chooses the Chaohe River Basin China as the study area, through the establishment of the SWAT model, loading the DEM data of the Chaohe river basin, the watershed is automatically divided into several sub-basins. Analyzing the land use, soil and slope which are on the basis of the sub-basins and calculating the hydrological response unit (HRU) of the study area, after running SWAT model, the runoff simulation values in the watershed are obtained. On this basis, using weather data, known daily runoff of three hydrological stations, combined with the SWAT-CUP automatic program and the manual adjustment method are used to analyze the multi-site calibration of the model parameters. Furthermore, the GLUE algorithm is used to analyze the parameters uncertainty of the SWAT model. Through the sensitivity analysis, calibration and uncertainty study of SWAT, the results indicate that the parameterization of the hydrological characteristics of the Chaohe river is successful and feasible which can be used to simulate the Chaohe river basin.

  11. A Community Data Model for Hydrologic Observations

    Science.gov (United States)

    Tarboton, D. G.; Horsburgh, J. S.; Zaslavsky, I.; Maidment, D. R.; Valentine, D.; Jennings, B.

    2006-12-01

    The CUAHSI Hydrologic Information System project is developing information technology infrastructure to support hydrologic science. Hydrologic information science involves the description of hydrologic environments in a consistent way, using data models for information integration. This includes a hydrologic observations data model for the storage and retrieval of hydrologic observations in a relational database designed to facilitate data retrieval for integrated analysis of information collected by multiple investigators. It is intended to provide a standard format to facilitate the effective sharing of information between investigators and to facilitate analysis of information within a single study area or hydrologic observatory, or across hydrologic observatories and regions. The observations data model is designed to store hydrologic observations and sufficient ancillary information (metadata) about the observations to allow them to be unambiguously interpreted and used and provide traceable heritage from raw measurements to usable information. The design is based on the premise that a relational database at the single observation level is most effective for providing querying capability and cross dimension data retrieval and analysis. This premise is being tested through the implementation of a prototype hydrologic observations database, and the development of web services for the retrieval of data from and ingestion of data into the database. These web services hosted by the San Diego Supercomputer center make data in the database accessible both through a Hydrologic Data Access System portal and directly from applications software such as Excel, Matlab and ArcGIS that have Standard Object Access Protocol (SOAP) capability. This paper will (1) describe the data model; (2) demonstrate the capability for representing diverse data in the same database; (3) demonstrate the use of the database from applications software for the performance of hydrologic analysis

  12. Analysis of thermal-hydrologic-mechanical behavior near an emplacement drift at Yucca Mountain

    International Nuclear Information System (INIS)

    Rutqvist, Jonny; Tsang, Chin-Fu

    2002-01-01

    A coupled thermal, hydrologic and mechanical (THM) analysis is conducted to evaluate the impact of coupled THM processes on the performance of a potential nuclear waste repository at Yucca Mountain, Nevada. The analysis considers changes in rock mass porosity, permeability, and capillary pressure caused by rock deformations during drift excavation, as well as those caused by thermo-mechanically induced rock deformations after emplacement of the heat-generating waste. The analysis consists of a detailed calibration of coupled hydraulic-mechanical rock mass properties against field experiments, followed by a prediction of the coupled thermal, hydrologic, and mechanical behavior around a potential repository drift. For the particular problem studied and parameters used, the analysis indicates that the stress-induced permeability changes will be within one order of magnitude and that these permeability changes do not significantly impact the overall flow pattern around the repository drift

  13. Global hydrological droughts in the 21st century under a changing hydrological regime

    Directory of Open Access Journals (Sweden)

    N. Wanders

    2015-01-01

    Full Text Available Climate change very likely impacts future hydrological drought characteristics across the world. Here, we quantify the impact of climate change on future low flows and associated hydrological drought characteristics on a global scale using an alternative drought identification approach that considers adaptation to future changes in hydrological regime. The global hydrological model PCR-GLOBWB was used to simulate daily discharge at 0.5° globally for 1971–2099. The model was forced with CMIP5 climate projections taken from five global circulation models (GCMs and four emission scenarios (representative concentration pathways, RCPs, from the Inter-Sectoral Impact Model Intercomparison Project. Drought events occur when discharge is below a threshold. The conventional variable threshold (VTM was calculated by deriving the threshold from the period 1971–2000. The transient variable threshold (VTMt is a non-stationary approach, where the threshold is based on the discharge values of the previous 30 years implying the threshold to vary every year during the 21st century. The VTMt adjusts to gradual changes in the hydrological regime as response to climate change. Results show a significant negative trend in the low flow regime over the 21st century for large parts of South America, southern Africa, Australia and the Mediterranean. In 40–52% of the world reduced low flows are projected, while increased low flows are found in the snow-dominated climates. In 27% of the global area both the drought duration and the deficit volume are expected to increase when applying the VTMt. However, this area will significantly increase to 62% when the VTM is applied. The mean global area in drought, with the VTMt, remains rather constant (11.7 to 13.4%, compared to the substantial increase when the VTM is applied (11.7 to 20%. The study illustrates that an alternative drought identification that considers adaptation to an altered hydrological regime has a

  14. Hydrological Response Unit Analysis Using AVSWAT 2000 for Keuliling Reservoir Watershed, Aceh Province, Indonesia

    Directory of Open Access Journals (Sweden)

    . Azmeri

    2015-04-01

    Full Text Available Sediments deposition derived from the erosion in upstream areas can lead to river siltation or canals downstream irrigation. According to the complexity of erosion problem at Keuliling reservoir, it is essential that topography, hydrology, soil type and land use to be analyzed comprehensively. Software used to analyze is AVSWAT 2000 (Arc View Soil and Water Assessment Tools-2000, one of the additional tool of ArcView program. The results obtained are the watershed delineation map, soil type map to produce soil erodibility factor (K which indicates the resistance of soil particles toward exfoliation, land use map to produce crop management factor (C and soil conservation and its management factors (P. Hydrology analysis includes soil type, land use and utility for the erosion rate analysis through Hydrologic Response Unit (HRU. The biggest HRU value of sub-basin is on area 5 and the lowest one is on area 10. All four HRU in sub-basin area 5 are potentially donating high value for HRU. In short, this area has the longest slope length so that it has a large LS factor. About 50% of the land was covered by bushes which gain higher C factor rather than forest. Moreover, it has contour crop conservation technique with 9-20 % declivity resulting in having dominant factor of P. Soil type is dominated by Meucampli Formation which has soil erodibility factor with high level of vulnerable toward the rainfall kinetic energy. All in all, the vast majority of HRU parameters in this sub-basin area obtain the highest HRU value. Hydrology analysis, soil type, and use-land are useful for land area analysis that is susceptible to erosion which was identified through Hydrologic Response Unit (HRU using GIS. As the matter of fact, spatially studies constructed with GIS can facilitate the agency to determine critical areas which are needed to be aware or fully rehabilitated.

  15. A novel dysregulated pathway-identification analysis based on global influence of within-pathway effects and crosstalk between pathways

    Science.gov (United States)

    Han, Junwei; Li, Chunquan; Yang, Haixiu; Xu, Yanjun; Zhang, Chunlong; Ma, Jiquan; Shi, Xinrui; Liu, Wei; Shang, Desi; Yao, Qianlan; Zhang, Yunpeng; Su, Fei; Feng, Li; Li, Xia

    2015-01-01

    Identifying dysregulated pathways from high-throughput experimental data in order to infer underlying biological insights is an important task. Current pathway-identification methods focus on single pathways in isolation; however, consideration of crosstalk between pathways could improve our understanding of alterations in biological states. We propose a novel method of pathway analysis based on global influence (PAGI) to identify dysregulated pathways, by considering both within-pathway effects and crosstalk between pathways. We constructed a global gene–gene network based on the relationships among genes extracted from a pathway database. We then evaluated the extent of differential expression for each gene, and mapped them to the global network. The random walk with restart algorithm was used to calculate the extent of genes affected by global influence. Finally, we used cumulative distribution functions to determine the significance values of the dysregulated pathways. We applied the PAGI method to five cancer microarray datasets, and compared our results with gene set enrichment analysis and five other methods. Based on these analyses, we demonstrated that PAGI can effectively identify dysregulated pathways associated with cancer, with strong reproducibility and robustness. We implemented PAGI using the freely available R-based and Web-based tools (http://bioinfo.hrbmu.edu.cn/PAGI). PMID:25551156

  16. Multi-model analysis in hydrological prediction

    Science.gov (United States)

    Lanthier, M.; Arsenault, R.; Brissette, F.

    2017-12-01

    Hydrologic modelling, by nature, is a simplification of the real-world hydrologic system. Therefore ensemble hydrological predictions thus obtained do not present the full range of possible streamflow outcomes, thereby producing ensembles which demonstrate errors in variance such as under-dispersion. Past studies show that lumped models used in prediction mode can return satisfactory results, especially when there is not enough information available on the watershed to run a distributed model. But all lumped models greatly simplify the complex processes of the hydrologic cycle. To generate more spread in the hydrologic ensemble predictions, multi-model ensembles have been considered. In this study, the aim is to propose and analyse a method that gives an ensemble streamflow prediction that properly represents the forecast probabilities and reduced ensemble bias. To achieve this, three simple lumped models are used to generate an ensemble. These will also be combined using multi-model averaging techniques, which generally generate a more accurate hydrogram than the best of the individual models in simulation mode. This new predictive combined hydrogram is added to the ensemble, thus creating a large ensemble which may improve the variability while also improving the ensemble mean bias. The quality of the predictions is then assessed on different periods: 2 weeks, 1 month, 3 months and 6 months using a PIT Histogram of the percentiles of the real observation volumes with respect to the volumes of the ensemble members. Initially, the models were run using historical weather data to generate synthetic flows. This worked for individual models, but not for the multi-model and for the large ensemble. Consequently, by performing data assimilation at each prediction period and thus adjusting the initial states of the models, the PIT Histogram could be constructed using the observed flows while allowing the use of the multi-model predictions. The under-dispersion has been

  17. 2003 hydrological drought - natural disaster

    International Nuclear Information System (INIS)

    Trninic, Dusan; Bosnjak, Tomislava

    2004-01-01

    An exceptionally dry and warm period from February to early October 2003 resulted in hydrological drought with attributes of a natural disaster in most of the Croatian regions. The paper presents hydrological analysis of the Sava River near Zupanja for the period 1945-2003 (N=59 years). In defining maximum annual volumes of isolated waves below the reference discharges, the following reference discharges were used:Q 30,95% = 202m 3 s -1 - minimum mean 30-day discharge, 95 % probability, Q 30,80% = 254m 3 s -1 - minimum mean 30-day discharge, 80 % probability, Q 95% = 297m 3 s -1 - (H = -17cm minimum navigation level = 95 % of water level duration from average duration curve). The analysis results have shown that the hydrological drought recorded during the current year belongs to the most thoroughly studied droughts in 59 years. For example, hydrological analysis of the reference discharge of 297m 3 s -1 has shown that this year drought comes second, immediately after the driest year 1946. However, this year hydrological drought hit the record duration of 103 days, unlike the one from 1946, which lasted 98 days. It is interesting that the hydrological droughts affect the Sava River usually in autumn and summer, rarely in winter, and it has never been recorded in spring (referring to the analysed 1945-2003 period). In conclusion, some recommendations are given for increase in low streamflows and on possible impacts of climate changes on these flows.(Author)

  18. The tempered one-sided stable density: a universal model for hydrological transport?

    International Nuclear Information System (INIS)

    Cvetkovic, Vladimir

    2011-01-01

    A generalized distribution for the water residence time in hydrological transport is proposed in the form of the tempered one-sided stable (TOSS) density. It is shown that limiting cases of the TOSS distribution recover virtually all distributions that have been considered in the literature for hydrological transport, from plug flow to flow reactor, the advection-dispersion model, and the gamma and Levy densities. The stable property of TOSS is particularly important, enabling a seamless transition between a time-domain random walk, and the Lagrangian (trajectory) approach along hydrological transport pathways.

  19. Safety assessment for deep underground disposal vault-pathways analysis

    International Nuclear Information System (INIS)

    Lyon, R.B.; Rosinger, E.L.J.

    1980-01-01

    The concept verification phase of the Canadian programme for the disposal of nuclear fuel waste encompasses a period of about three years before the start of site selection. During this time, the methodology for Environmental and Safety Assessment studies is being developed by focusing on a model site. Pathways analysis is an important component of these studies. It involves the prediction of the rate at which radionuclides might be released from a disposal vault and travel through the geosphere and biosphere to reach man. The pathways analysis studies cover three major topics: geosphere pathways analysis, biosphere pathways analysis and potentially-disruptive-phenomena analysis. Geosphere pathways analysis includes a total systems analysis, using the computer program GARD2, vault analysis, which considers container failure and waste leaching, hydrogeological modelling and geochemical modelling. Biosphere pathways analysis incorporates a compartmental modelling approach using the computer program RAMM, and a food chain analysis using the computer program FOOD II. Potentially-disruptive-phenomena analysis involves the estimation of the probability and consequences of events such as earthquakes which might reduce the effectiveness of the barriers preventing the release of radionuclides. The current stage of development of the required methodology and data is discussed in each of the three areas and preliminary results are presented. (author)

  20. Scale effect challenges in urban hydrology highlighted with a distributed hydrological model

    Science.gov (United States)

    Ichiba, Abdellah; Gires, Auguste; Tchiguirinskaia, Ioulia; Schertzer, Daniel; Bompard, Philippe; Ten Veldhuis, Marie-Claire

    2018-01-01

    Hydrological models are extensively used in urban water management, development and evaluation of future scenarios and research activities. There is a growing interest in the development of fully distributed and grid-based models. However, some complex questions related to scale effects are not yet fully understood and still remain open issues in urban hydrology. In this paper we propose a two-step investigation framework to illustrate the extent of scale effects in urban hydrology. First, fractal tools are used to highlight the scale dependence observed within distributed data input into urban hydrological models. Then an intensive multi-scale modelling work is carried out to understand scale effects on hydrological model performance. Investigations are conducted using a fully distributed and physically based model, Multi-Hydro, developed at Ecole des Ponts ParisTech. The model is implemented at 17 spatial resolutions ranging from 100 to 5 m. Results clearly exhibit scale effect challenges in urban hydrology modelling. The applicability of fractal concepts highlights the scale dependence observed within distributed data. Patterns of geophysical data change when the size of the observation pixel changes. The multi-scale modelling investigation confirms scale effects on hydrological model performance. Results are analysed over three ranges of scales identified in the fractal analysis and confirmed through modelling. This work also discusses some remaining issues in urban hydrology modelling related to the availability of high-quality data at high resolutions, and model numerical instabilities as well as the computation time requirements. The main findings of this paper enable a replacement of traditional methods of model calibration by innovative methods of model resolution alteration based on the spatial data variability and scaling of flows in urban hydrology.

  1. Analysis of Hydrological Sensitivity for Flood Risk Assessment

    Directory of Open Access Journals (Sweden)

    Sanjay Kumar Sharma

    2018-02-01

    Full Text Available In order for the Indian government to maximize Integrated Water Resource Management (IWRM, the Brahmaputra River has played an important role in the undertaking of the Pilot Basin Study (PBS due to the Brahmaputra River’s annual regional flooding. The selected Kulsi River—a part of Brahmaputra sub-basin—experienced severe floods in 2007 and 2008. In this study, the Rainfall-Runoff-Inundation (RRI hydrological model was used to simulate the recent historical flood in order to understand and improve the integrated flood risk management plan. The ultimate objective was to evaluate the sensitivity of hydrologic simulation using different Digital Elevation Model (DEM resources, coupled with DEM smoothing techniques, with a particular focus on the comparison of river discharge and flood inundation extent. As a result, the sensitivity analysis showed that, among the input parameters, the RRI model is highly sensitive to Manning’s roughness coefficient values for flood plains, followed by the source of the DEM, and then soil depth. After optimizing its parameters, the simulated inundation extent showed that the smoothing filter was more influential than its simulated discharge at the outlet. Finally, the calibrated and validated RRI model simulations agreed well with the observed discharge and the Moderate Imaging Spectroradiometer (MODIS-detected flood extents.

  2. Uncertainty in projected point precipitation extremes for hydrological impact analysis of climate change

    Science.gov (United States)

    Van Uytven, Els; Willems, Patrick

    2017-04-01

    Current trends in the hydro-meteorological variables indicate the potential impact of climate change on hydrological extremes. Therefore, they trigger an increased importance climate adaptation strategies in water management. The impact of climate change on hydro-meteorological and hydrological extremes is, however, highly uncertain. This is due to uncertainties introduced by the climate models, the internal variability inherent to the climate system, the greenhouse gas scenarios and the statistical downscaling methods. In view of the need to define sustainable climate adaptation strategies, there is a need to assess these uncertainties. This is commonly done by means of ensemble approaches. Because more and more climate models and statistical downscaling methods become available, there is a need to facilitate the climate impact and uncertainty analysis. A Climate Perturbation Tool has been developed for that purpose, which combines a set of statistical downscaling methods including weather typing, weather generator, transfer function and advanced perturbation based approaches. By use of an interactive interface, climate impact modelers can apply these statistical downscaling methods in a semi-automatic way to an ensemble of climate model runs. The tool is applicable to any region, but has been demonstrated so far to cases in Belgium, Suriname, Vietnam and Bangladesh. Time series representing future local-scale precipitation, temperature and potential evapotranspiration (PET) conditions were obtained, starting from time series of historical observations. Uncertainties on the future meteorological conditions are represented in two different ways: through an ensemble of time series, and a reduced set of synthetic scenarios. The both aim to span the full uncertainty range as assessed from the ensemble of climate model runs and downscaling methods. For Belgium, for instance, use was made of 100-year time series of 10-minutes precipitation observations and daily

  3. Ensemble Analysis of Variational Assimilation of Hydrologic and Hydrometeorological Data into Distributed Hydrologic Model

    Science.gov (United States)

    Lee, H.; Seo, D.; Koren, V.

    2008-12-01

    A prototype 4DVAR (four-dimensional variational) data assimilator for gridded Sacramento soil-moisture accounting and kinematic-wave routing models in the Hydrology Laboratory's Research Distributed Hydrologic Model (HL-RDHM) has been developed. The prototype assimilates streamflow and in-situ soil moisture data and adjusts gridded precipitation and climatological potential evaporation data to reduce uncertainty in the model initial conditions for improved monitoring and prediction of streamflow and soil moisture at the outlet and interior locations within the catchment. Due to large degrees of freedom involved, data assimilation (DA) into distributed hydrologic models is complex. To understand and assess sensitivity of the performance of DA to uncertainties in the model initial conditions and in the data, two synthetic experiments have been carried out in an ensemble framework. Results from the synthetic experiments shed much light on the potential and limitations with DA into distributed models. For initial real-world assessment, the prototype DA has also been applied to the headwater basin at Eldon near the Oklahoma-Arkansas border. We present these results and describe the next steps.

  4. Primary Metabolic Pathways and Metabolic Flux Analysis

    DEFF Research Database (Denmark)

    Villadsen, John

    2015-01-01

    his chapter introduces the metabolic flux analysis (MFA) or stoichiometry-based MFA, and describes the quantitative basis for MFA. It discusses the catabolic pathways in which free energy is produced to drive the cell-building anabolic pathways. An overview of these primary pathways provides...... the reader who is primarily trained in the engineering sciences with atleast a preliminary introduction to biochemistry and also shows how carbon is drained off the catabolic pathways to provide precursors for cell mass building and sometimes for important industrial products. The primary pathways...... to be examined in the following are: glycolysis, primarily by the EMP pathway, but other glycolytic pathways is also mentioned; fermentative pathways in which the redox generated in the glycolytic reactions are consumed; reactions in the tricarboxylic acid (TCA) cycle, which produce biomass precursors and redox...

  5. Hillslope hydrology and stability

    Science.gov (United States)

    Lu, Ning; Godt, Jonathan

    2012-01-01

    Landslides are caused by a failure of the mechanical balance within hillslopes. This balance is governed by two coupled physical processes: hydrological or subsurface flow and stress. The stabilizing strength of hillslope materials depends on effective stress, which is diminished by rainfall. This book presents a cutting-edge quantitative approach to understanding hydro-mechanical processes across variably saturated hillslope environments and to the study and prediction of rainfall-induced landslides. Topics covered include historic synthesis of hillslope geomorphology and hydrology, total and effective stress distributions, critical reviews of shear strength of hillslope materials and different bases for stability analysis. Exercises and homework problems are provided for students to engage with the theory in practice. This is an invaluable resource for graduate students and researchers in hydrology, geomorphology, engineering geology, geotechnical engineering and geomechanics and for professionals in the fields of civil and environmental engineering and natural hazard analysis.

  6. A systems biology approach for pathway level analysis

    OpenAIRE

    Draghici, Sorin; Khatri, Purvesh; Tarca, Adi Laurentiu; Amin, Kashyap; Done, Arina; Voichita, Calin; Georgescu, Constantin; Romero, Roberto

    2007-01-01

    A common challenge in the analysis of genomics data is trying to understand the underlying phenomenon in the context of all complex interactions taking place on various signaling pathways. A statistical approach using various models is universally used to identify the most relevant pathways in a given experiment. Here, we show that the existing pathway analysis methods fail to take into consideration important biological aspects and may provide incorrect results in certain situations. By usin...

  7. Hydrological model calibration for derived flood frequency analysis using stochastic rainfall and probability distributions of peak flows

    Science.gov (United States)

    Haberlandt, U.; Radtke, I.

    2014-01-01

    Derived flood frequency analysis allows the estimation of design floods with hydrological modeling for poorly observed basins considering change and taking into account flood protection measures. There are several possible choices regarding precipitation input, discharge output and consequently the calibration of the model. The objective of this study is to compare different calibration strategies for a hydrological model considering various types of rainfall input and runoff output data sets and to propose the most suitable approach. Event based and continuous, observed hourly rainfall data as well as disaggregated daily rainfall and stochastically generated hourly rainfall data are used as input for the model. As output, short hourly and longer daily continuous flow time series as well as probability distributions of annual maximum peak flow series are employed. The performance of the strategies is evaluated using the obtained different model parameter sets for continuous simulation of discharge in an independent validation period and by comparing the model derived flood frequency distributions with the observed one. The investigations are carried out for three mesoscale catchments in northern Germany with the hydrological model HEC-HMS (Hydrologic Engineering Center's Hydrologic Modeling System). The results show that (I) the same type of precipitation input data should be used for calibration and application of the hydrological model, (II) a model calibrated using a small sample of extreme values works quite well for the simulation of continuous time series with moderate length but not vice versa, and (III) the best performance with small uncertainty is obtained when stochastic precipitation data and the observed probability distribution of peak flows are used for model calibration. This outcome suggests to calibrate a hydrological model directly on probability distributions of observed peak flows using stochastic rainfall as input if its purpose is the

  8. Artificial radioisotopes in hydrological investigation

    International Nuclear Information System (INIS)

    Plata-Bedmar, A.

    1988-01-01

    Radioisotope techniques have an important part in hydrological investigations. Sealed radiation sources have been used for measurements of sediments transported by river water, of thickness and density of sediment layers. X-ray fluorescence analysis and well-logging are widely applied in hydrological research. Tracer techniques have been useful in flow rate and river dynamics research, sediments tracing, irrigation and ground water problems, infiltration rate evaluation etc. The IAEA is supporting several projects involving the use of radioactive tracers in hydrological investigations p.e. in Guatemala, Romania, South East Asia, Brazil, Chile and Nicaragua

  9. Final report on the Pathway Analysis Task

    International Nuclear Information System (INIS)

    Whicker, F.W.; Kirchner, T.B.

    1993-04-01

    The Pathway Analysis Task constituted one of several multi-laboratory efforts to estimate radiation doses to people, considering all important pathways of exposure, from the testing of nuclear devices at the Nevada Test Site (NTS). The primary goal of the Pathway Analysis Task was to predict radionuclide ingestion by residents of Utah, Nevada, and portions of seven other adjoining western states following radioactive fallout deposition from individual events at the NTS. This report provides comprehensive documentation of the activities and accomplishments of Colorado State University's Pathway Analysis Task during the entire period of support (1979--91). The history of the project will be summarized, indicating the principal dates and milestones, personnel involved, subcontractors, and budget information. Accomplishments, both primary and auxiliary, will be summarized with general results rather than technical details being emphasized. This will also serve as a guide to the reports and open literature publications produced, where the methodological details and specific results are documented. Selected examples of results on internal dose estimates are provided in this report because the data have not been published elsewhere

  10. Final report on the Pathway Analysis Task

    Energy Technology Data Exchange (ETDEWEB)

    Whicker, F.W.; Kirchner, T.B. [Colorado State Univ., Fort Collins, CO (United States)

    1993-04-01

    The Pathway Analysis Task constituted one of several multi-laboratory efforts to estimate radiation doses to people, considering all important pathways of exposure, from the testing of nuclear devices at the Nevada Test Site (NTS). The primary goal of the Pathway Analysis Task was to predict radionuclide ingestion by residents of Utah, Nevada, and portions of seven other adjoining western states following radioactive fallout deposition from individual events at the NTS. This report provides comprehensive documentation of the activities and accomplishments of Colorado State University`s Pathway Analysis Task during the entire period of support (1979--91). The history of the project will be summarized, indicating the principal dates and milestones, personnel involved, subcontractors, and budget information. Accomplishments, both primary and auxiliary, will be summarized with general results rather than technical details being emphasized. This will also serve as a guide to the reports and open literature publications produced, where the methodological details and specific results are documented. Selected examples of results on internal dose estimates are provided in this report because the data have not been published elsewhere.

  11. The future use of pathway analysis in IAEA safeguards

    International Nuclear Information System (INIS)

    Budlong Sylvester, Kory; Pilat, J.; Murphy, Chantell

    2013-01-01

    Pathway analysis has the potential to play an important role in the development of a safeguards system that is more information driven, leveraging all the information available to the International Atomic Energy Agency (IAEA). Pathway analysis should be seen as an extension of traditional hypothesis testing used by the Agency in the past. The most attractive pathways based on the assessed capabilities of a given state can be identified and used in the development of state-level safeguards approaches. This ranking of pathways can be revised based on evidence of pathway use, or preparations for use, allowing limited safeguards resources to flow to the areas of highest concern. The possible uses of pathway analysis in the implementation of the IAEA's state-level concept are described along with implementation issues that will likely arise. The paper is followed by the slides of the presentation. (authors)

  12. Terrestrial Hydrological Data from NASA's Hydrology Data and Information Services Center (HDISC): Products, Services, and Applications

    Science.gov (United States)

    Fang, Hongliang; Beaudoing, Hiroko K.; Mocko, David M.; Rodell, Matthew; Teng, Bill; Vollmer, Bruce

    2010-01-01

    Terrestrial hydrological variables are important in global hydrology, climate, and carbon cycle studies. The North American and Global Land Data Assimilation Systems (NLDAS and GLDAS, respectively) have been generating a series of land surface states (soil moisture, snow, and temperature) and fluxes (evapotranspiration, radiation, and heat flux) variables. These data, hosted at and available from NASA s Hydrology Data and Information Services Center (HDISC), include the NLDAS hourly 1/8 degree products and the GLDAS 3-hourly 0.25 and 1.0 degree products. HDISC provides easy access and visualization and analysis capabilities for these products, thus reducing the time and resources spent by scientists on data management and facilitating hydrological research. Users can perform spatial and parameter subsetting, data format transformation, and data analysis operations without needing to first download the data. HDISC is continually being developed as a data and services portal that supports weather and climate forecasts, and water and energy cycle research.

  13. Ensemble catchment hydrological modelling for climate change impact analysis

    Science.gov (United States)

    Vansteenkiste, Thomas; Ntegeka, Victor; Willems, Patrick

    2014-05-01

    It is vital to investigate how the hydrological model structure affects the climate change impact given that future changes not in the range for which the models were calibrated or validated are likely. Thus an ensemble modelling approach which involves a diversity of models with different structures such as spatial resolutions and process descriptions is crucial. The ensemble modelling approach was applied to a set of models: from the lumped conceptual models NAM, PDM and VHM, an intermediate detailed and distributed model WetSpa, to the highly detailed and fully distributed model MIKE-SHE. Explicit focus was given to the high and low flow extremes. All models were calibrated for sub flows and quick flows derived from rainfall and potential evapotranspiration (ETo) time series. In general, all models were able to produce reliable estimates of the flow regimes under the current climate for extreme peak and low flows. An intercomparison of the low and high flow changes under changed climatic conditions was made using climate scenarios tailored for extremes. Tailoring was important for two reasons. First, since the use of many scenarios was not feasible it was necessary to construct few scenarios that would reasonably represent the range of extreme impacts. Second, scenarios would be more informative as changes in high and low flows would be easily traced to changes of ETo and rainfall; the tailored scenarios are constructed using seasonal changes that are defined using different levels of magnitude (high, mean and low) for rainfall and ETo. After simulation of these climate scenarios in the five hydrological models, close agreement was found among the models. The different models predicted similar range of peak flow changes. For the low flows, however, the differences in the projected impact range by different hydrological models was larger, particularly for the drier scenarios. This suggests that the hydrological model structure is critical in low flow predictions

  14. From Site Data to Safety Assessment: Analysis of Present and Future Hydrological Conditions at a Coastal Site in Sweden

    International Nuclear Information System (INIS)

    Berglund, Sten; Bosson, Emma; Sassner, Mona

    2013-01-01

    This paper presents an analysis of present and future hydrological conditions at the Forsmark site in Sweden, which has been proposed as the site for a geological repository for spent nuclear fuel. Forsmark is a coastal site that changes in response to shoreline displacement. In the considered time frame (until year 10 000 ad), the hydrological system will be affected by landscape succession associated with shoreline displacement and changes in vegetation, regolith stratigraphy, and climate. Based on extensive site investigations and modeling of present hydrological conditions, the effects of different processes on future site hydrology are quantified. As expected, shoreline displacement has a strong effect on local hydrology (e.g., groundwater flow) in areas that change from sea to land. The comparison between present and future land areas emphasizes the importance of climate variables relative to other factors for main hydrological features such as water balances

  15. Cleanup standards and pathways analysis methods

    International Nuclear Information System (INIS)

    Devgun, J.S.

    1993-01-01

    Remediation of a radioactively contaminated site requires that certain regulatory criteria be met before the site can be released for unrestricted future use. Since the ultimate objective of remediation is to protect the public health and safety, residual radioactivity levels remaining at a site after cleanup must be below certain preset limits or meet acceptable dose or risk criteria. Release of a decontaminated site requires proof that the radiological data obtained from the site meet the regulatory criteria for such a release. Typically release criteria consist of a composite of acceptance limits that depend on the radionuclides, the media in which they are present, and federal and local regulations. In recent years, the US Department of Energy (DOE) has developed a pathways analysis model to determine site-specific soil activity concentration guidelines for radionuclides that do not have established generic acceptance limits. The DOE pathways analysis computer code (developed by Argonne National Laboratory for the DOE) is called RESRAD (Gilbert et al. 1989). Similar efforts have been initiated by the US Nuclear Regulatory Commission (NRC) to develop and use dose-related criteria based on genetic pathways analyses rather than simplistic numerical limits on residual radioactivity. The focus of this paper is radionuclide contaminated soil. Cleanup standards are reviewed, pathways analysis methods are described, and an example is presented in which RESRAD was used to derive cleanup guidelines

  16. Enabling Web-Based Analysis of CUAHSI HIS Hydrologic Data Using R and Web Processing Services

    Science.gov (United States)

    Ames, D. P.; Kadlec, J.; Bayles, M.; Seul, M.; Hooper, R. P.; Cummings, B.

    2015-12-01

    The CUAHSI Hydrologic Information System (CUAHSI HIS) provides open access to a large number of hydrological time series observation and modeled data from many parts of the world. Several software tools have been designed to simplify searching and access to the CUAHSI HIS datasets. These software tools include: Desktop client software (HydroDesktop, HydroExcel), developer libraries (WaterML R Package, OWSLib, ulmo), and the new interactive search website, http://data.cuahsi.org. An issue with using the time series data from CUAHSI HIS for further analysis by hydrologists (for example for verification of hydrological and snowpack models) is the large heterogeneity of the time series data. The time series may be regular or irregular, contain missing data, have different time support, and be recorded in different units. R is a widely used computational environment for statistical analysis of time series and spatio-temporal data that can be used to assess fitness and perform scientific analyses on observation data. R includes the ability to record a data analysis in the form of a reusable script. The R script together with the input time series dataset can be shared with other users, making the analysis more reproducible. The major goal of this study is to examine the use of R as a Web Processing Service for transforming time series data from the CUAHSI HIS and sharing the results on the Internet within HydroShare. HydroShare is an online data repository and social network for sharing large hydrological data sets such as time series, raster datasets, and multi-dimensional data. It can be used as a permanent cloud storage space for saving the time series analysis results. We examine the issues associated with running R scripts online: including code validation, saving of outputs, reporting progress, and provenance management. An explicit goal is that the script which is run locally should produce exactly the same results as the script run on the Internet. Our design can

  17. Pathway Interaction Network Analysis Identifies Dysregulated Pathways in Human Monocytes Infected by Listeria monocytogenes

    Directory of Open Access Journals (Sweden)

    Wufeng Fan

    2017-01-01

    Full Text Available In our study, we aimed to extract dysregulated pathways in human monocytes infected by Listeria monocytogenes (LM based on pathway interaction network (PIN which presented the functional dependency between pathways. After genes were aligned to the pathways, principal component analysis (PCA was used to calculate the pathway activity for each pathway, followed by detecting seed pathway. A PIN was constructed based on gene expression profile, protein-protein interactions (PPIs, and cellular pathways. Identifying dysregulated pathways from the PIN was performed relying on seed pathway and classification accuracy. To evaluate whether the PIN method was feasible or not, we compared the introduced method with standard network centrality measures. The pathway of RNA polymerase II pretranscription events was selected as the seed pathway. Taking this seed pathway as start, one pathway set (9 dysregulated pathways with AUC score of 1.00 was identified. Among the 5 hub pathways obtained using standard network centrality measures, 4 pathways were the common ones between the two methods. RNA polymerase II transcription and DNA replication owned a higher number of pathway genes and DEGs. These dysregulated pathways work together to influence the progression of LM infection, and they will be available as biomarkers to diagnose LM infection.

  18. A framework for improving a seasonal hydrological forecasting system using sensitivity analysis

    Science.gov (United States)

    Arnal, Louise; Pappenberger, Florian; Smith, Paul; Cloke, Hannah

    2017-04-01

    Seasonal streamflow forecasts are of great value for the socio-economic sector, for applications such as navigation, flood and drought mitigation and reservoir management for hydropower generation and water allocation to agriculture and drinking water. However, as we speak, the performance of dynamical seasonal hydrological forecasting systems (systems based on running seasonal meteorological forecasts through a hydrological model to produce seasonal hydrological forecasts) is still limited in space and time. In this context, the ESP (Ensemble Streamflow Prediction) remains an attractive forecasting method for seasonal streamflow forecasting as it relies on forcing a hydrological model (starting from the latest observed or simulated initial hydrological conditions) with historical meteorological observations. This makes it cheaper to run than a standard dynamical seasonal hydrological forecasting system, for which the seasonal meteorological forecasts will first have to be produced, while still producing skilful forecasts. There is thus the need to focus resources and time towards improvements in dynamical seasonal hydrological forecasting systems which will eventually lead to significant improvements in the skill of the streamflow forecasts generated. Sensitivity analyses are a powerful tool that can be used to disentangle the relative contributions of the two main sources of errors in seasonal streamflow forecasts, namely the initial hydrological conditions (IHC; e.g., soil moisture, snow cover, initial streamflow, among others) and the meteorological forcing (MF; i.e., seasonal meteorological forecasts of precipitation and temperature, input to the hydrological model). Sensitivity analyses are however most useful if they inform and change current operational practices. To this end, we propose a method to improve the design of a seasonal hydrological forecasting system. This method is based on sensitivity analyses, informing the forecasters as to which element of

  19. A spatiotemporal analysis of hydrological patterns based on a wireless sensor network system

    Science.gov (United States)

    Plaza, F.; Slater, T. A.; Zhong, X.; Li, Y.; Liang, Y.; Liang, X.

    2017-12-01

    Understanding complicated spatiotemporal patterns of eco-hydrological variables at a small scale plays a profound role in improving predictability of high resolution distributed hydrological models. However, accurate and continuous monitoring of these complex patterns has become one of the main challenges in the environmental sciences. Wireless sensor networks (WSNs) have emerged as one of the most widespread potential solutions to achieve this. This study presents a spatiotemporal analysis of hydrological patterns (e.g., soil moisture, soil water potential, soil temperature and transpiration) based on observational data collected from a dense multi-hop wireless sensor network (WSN) in a steep-forested testbed located in Southwestern Pennsylvania, USA. At this WSN testbed with an approximate area of 3000 m2, environmental variables are collected from over 240 sensors that are connected to more than 100 heterogeneous motes. The sensors include the soil moisture of EC-5, soil temperature and soil water potential of MPS-1 and MPS-2, and sap flow sensors constructed in house. The motes consist of MICAz, IRIS and TelosB. In addition, several data loggers have been installed along the site to provide a comparative reference to the WSN measurements for the purpose of checking the WSN data quality. The edaphic properties monitored by the WSN sensors show strong agreement with the data logger measurements. Moreover, sap flow measurements, scaled to tree stand transpiration, are found to be reasonable. This study also investigates the feasibility and roles that these sensor measurements play in improving the performance of high-resolution distributed hydrological models. In particular, we explore this using a modified version of the Distributed Hydrological Soil Vegetation Model (DHSVM).

  20. Comparative analysis of meteorological and hydrological drought in the Pearl River basin during the period 1960-2012

    Science.gov (United States)

    Xu, K.; Wu, C.; Hu, B.; Niu, J.

    2017-12-01

    Drought is one of the major natural hazards that can have devastating impacts on the regional environment, agriculture, and water resources. Previous studies have conducted the assessment of historic changes in meteorological drought over various regional scales but rarely considered hydrological drought due to limited hydrological observations. Here, we use a long-term (1960-2012) gridded hydro-meteorological data to present a comparative analysis of meteorological and hydrological drought in the Pearl River basin in southern China using the standardized precipitation index (SPI) and the standardized runoff index (SRI). The variation in SPI and SRI at four different timescales (1-, 3-, 6-, and 12-month) is investigated using the Mann-Kendall (M-K) method and continuous wavelet transform (CWT). The results indicate that the correlation between SPI and SRI is strong over the Pearl River basin and tends to be stronger at the longer timescale. Meanwhile, the periodic oscillation pattern of SPI becomes more consistent with that of SRI with the increased timescale. The SPI can be used as a substitute for SRI to represent the hydrological drought at the long-term scale. Overall there is a noticeably wetting trend mainly in the eastern parts and a significant drying trend mainly in the western regions and the downstream area of the Pearl River basin. The variability of meteorological drought is significant mainly in the eastern and western regions, while the variability of hydrological drought tends to be larger mainly in the western region. CWT analysis indicates a period of 0.75-7 years in both meteorological and hydrological droughts during the period 1960-2012 in the study region.

  1. Publishing and sharing of hydrologic models through WaterHUB

    Science.gov (United States)

    Merwade, V.; Ruddell, B. L.; Song, C.; Zhao, L.; Kim, J.; Assi, A.

    2011-12-01

    Most hydrologists use hydrologic models to simulate the hydrologic processes to understand hydrologic pathways and fluxes for research, decision making and engineering design. Once these tasks are complete including publication of results, the models generally are not published or made available to the public for further use and improvement. Although publication or sharing of models is not required for journal publications, sharing of models may open doors for new collaborations, and avoids duplication of efforts if other researchers are interested in simulating a particular watershed for which a model already exists. For researchers, who are interested in sharing models, there are limited avenues to publishing their models to the wider community. Towards filling this gap, a prototype cyberinfrastructure (CI), called WaterHUB, is developed for sharing hydrologic data and modeling tools in an interactive environment. To test the utility of WaterHUB for sharing hydrologic models, a system to publish and share SWAT (Soil Water Assessment Tool) is developed. Users can utilize WaterHUB to search and download existing SWAT models, and also upload new SWAT models. Metadata such as the name of the watershed, name of the person or agency who developed the model, simulation period, time step, and list of calibrated parameters also published with individual model.

  2. An Educational Model for Hands-On Hydrology Education

    Science.gov (United States)

    AghaKouchak, A.; Nakhjiri, N.; Habib, E. H.

    2014-12-01

    This presentation provides an overview of a hands-on modeling tool developed for students in civil engineering and earth science disciplines to help them learn the fundamentals of hydrologic processes, model calibration, sensitivity analysis, uncertainty assessment, and practice conceptual thinking in solving engineering problems. The toolbox includes two simplified hydrologic models, namely HBV-EDU and HBV-Ensemble, designed as a complement to theoretical hydrology lectures. The models provide an interdisciplinary application-oriented learning environment that introduces the hydrologic phenomena through the use of a simplified conceptual hydrologic model. The toolbox can be used for in-class lab practices and homework assignments, and assessment of students' understanding of hydrological processes. Using this modeling toolbox, students can gain more insights into how hydrological processes (e.g., precipitation, snowmelt and snow accumulation, soil moisture, evapotranspiration and runoff generation) are interconnected. The educational toolbox includes a MATLAB Graphical User Interface (GUI) and an ensemble simulation scheme that can be used for teaching more advanced topics including uncertainty analysis, and ensemble simulation. Both models have been administered in a class for both in-class instruction and a final project, and students submitted their feedback about the toolbox. The results indicate that this educational software had a positive impact on students understanding and knowledge of hydrology.

  3. Separate enrichment analysis of pathways for up- and downregulated genes.

    Science.gov (United States)

    Hong, Guini; Zhang, Wenjing; Li, Hongdong; Shen, Xiaopei; Guo, Zheng

    2014-03-06

    Two strategies are often adopted for enrichment analysis of pathways: the analysis of all differentially expressed (DE) genes together or the analysis of up- and downregulated genes separately. However, few studies have examined the rationales of these enrichment analysis strategies. Using both microarray and RNA-seq data, we show that gene pairs with functional links in pathways tended to have positively correlated expression levels, which could result in an imbalance between the up- and downregulated genes in particular pathways. We then show that the imbalance could greatly reduce the statistical power for finding disease-associated pathways through the analysis of all-DE genes. Further, using gene expression profiles from five types of tumours, we illustrate that the separate analysis of up- and downregulated genes could identify more pathways that are really pertinent to phenotypic difference. In conclusion, analysing up- and downregulated genes separately is more powerful than analysing all of the DE genes together.

  4. A strategy for evaluating pathway analysis methods.

    Science.gov (United States)

    Yu, Chenggang; Woo, Hyung Jun; Yu, Xueping; Oyama, Tatsuya; Wallqvist, Anders; Reifman, Jaques

    2017-10-13

    Researchers have previously developed a multitude of methods designed to identify biological pathways associated with specific clinical or experimental conditions of interest, with the aim of facilitating biological interpretation of high-throughput data. Before practically applying such pathway analysis (PA) methods, we must first evaluate their performance and reliability, using datasets where the pathways perturbed by the conditions of interest have been well characterized in advance. However, such 'ground truths' (or gold standards) are often unavailable. Furthermore, previous evaluation strategies that have focused on defining 'true answers' are unable to systematically and objectively assess PA methods under a wide range of conditions. In this work, we propose a novel strategy for evaluating PA methods independently of any gold standard, either established or assumed. The strategy involves the use of two mutually complementary metrics, recall and discrimination. Recall measures the consistency of the perturbed pathways identified by applying a particular analysis method to an original large dataset and those identified by the same method to a sub-dataset of the original dataset. In contrast, discrimination measures specificity-the degree to which the perturbed pathways identified by a particular method to a dataset from one experiment differ from those identifying by the same method to a dataset from a different experiment. We used these metrics and 24 datasets to evaluate six widely used PA methods. The results highlighted the common challenge in reliably identifying significant pathways from small datasets. Importantly, we confirmed the effectiveness of our proposed dual-metric strategy by showing that previous comparative studies corroborate the performance evaluations of the six methods obtained by our strategy. Unlike any previously proposed strategy for evaluating the performance of PA methods, our dual-metric strategy does not rely on any ground truth

  5. Flood Modelling of Banjir Kanal Barat (Integration of Hydrology Model and GIS

    Directory of Open Access Journals (Sweden)

    Muhammad Aris Marfai

    2004-01-01

    Full Text Available Hydrological modelling has an advantage on river flood study. Hydrological factors can be easily determined and calculated using hydrological model. HEC-RAS (Hydrological Engineering Centre-River Analysis System software is well known as hydrological modelling software for flood simulation and encroachment analysis of the floodplain area. For spatial performance and analysis of flood, the integration of the Geographic Information Systems (GIS and hydrological model is needed. The aims of this research are 1 to perform a flood encroachment using HEC-RAS software, and 2 to generate a flood hazard map. The methodology for this research omprise of 1 generating geometric data as a requirement of the data input on HEC-RAS hydrological model, 2 Hydrological data inputting, 3 generating of the flood encroachment analysis, and 4 transformation of flood encroachment into flood hazard map. The spatial pattern of the flood hazard is illustrated in a map. The result shows that hydrological model as integration with GIS can be used for flood hazard map generation. This method has advantages on the calculation of the hydrological factors of flood and spatial performance of the flood hazard map. For further analysis, the landuse map can be used on the overlay operation with the flood hazard map in order to obtain the impact of the flood on the landuse.

  6. Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data.

    Science.gov (United States)

    Beltrame, Luca; Bianco, Luca; Fontana, Paolo; Cavalieri, Duccio

    2013-07-15

    Pathway Processor 2.0 is a web application designed to analyze high-throughput datasets, including but not limited to microarray and next-generation sequencing, using a pathway centric logic. In addition to well-established methods such as the Fisher's test and impact analysis, Pathway Processor 2.0 offers innovative methods that convert gene expression into pathway expression, leading to the identification of differentially regulated pathways in a dataset of choice. Pathway Processor 2.0 is available as a web service at http://compbiotoolbox.fmach.it/pathwayProcessor/. Sample datasets to test the functionality can be used directly from the application. duccio.cavalieri@fmach.it Supplementary data are available at Bioinformatics online.

  7. minepath.org: a free interactive pathway analysis web server.

    Science.gov (United States)

    Koumakis, Lefteris; Roussos, Panos; Potamias, George

    2017-07-03

    ( www.minepath.org ) is a web-based platform that elaborates on, and radically extends the identification of differentially expressed sub-paths in molecular pathways. Besides the network topology, the underlying MinePath algorithmic processes exploit exact gene-gene molecular relationships (e.g. activation, inhibition) and are able to identify differentially expressed pathway parts. Each pathway is decomposed into all its constituent sub-paths, which in turn are matched with corresponding gene expression profiles. The highly ranked, and phenotype inclined sub-paths are kept. Apart from the pathway analysis algorithm, the fundamental innovation of the MinePath web-server concerns its advanced visualization and interactive capabilities. To our knowledge, this is the first pathway analysis server that introduces and offers visualization of the underlying and active pathway regulatory mechanisms instead of genes. Other features include live interaction, immediate visualization of functional sub-paths per phenotype and dynamic linked annotations for the engaged genes and molecular relations. The user can download not only the results but also the corresponding web viewer framework of the performed analysis. This feature provides the flexibility to immediately publish results without publishing source/expression data, and get all the functionality of a web based pathway analysis viewer. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  8. Simplified analysis for liquid pathway studies

    International Nuclear Information System (INIS)

    Codell, R.B.

    1984-08-01

    The analysis of the potential contamination of surface water via groundwater contamination from severe nuclear accidents is routinely calculated during licensing reviews. This analysis is facilitated by the methods described in this report, which is codified into a BASIC language computer program, SCREENLP. This program performs simplified calculations for groundwater and surface water transport and calculates population doses to potential users for the contaminated water irrespective of possible mitigation methods. The results are then compared to similar analyses performed using data for the generic sites in NUREG-0440, Liquid Pathway Generic Study, to determine if the site being investigated would pose any unusual liquid pathway hazards

  9. Bayesian analysis of data and model error in rainfall-runoff hydrological models

    Science.gov (United States)

    Kavetski, D.; Franks, S. W.; Kuczera, G.

    2004-12-01

    A major unresolved issue in the identification and use of conceptual hydrologic models is realistic description of uncertainty in the data and model structure. In particular, hydrologic parameters often cannot be measured directly and must be inferred (calibrated) from observed forcing/response data (typically, rainfall and runoff). However, rainfall varies significantly in space and time, yet is often estimated from sparse gauge networks. Recent work showed that current calibration methods (e.g., standard least squares, multi-objective calibration, generalized likelihood uncertainty estimation) ignore forcing uncertainty and assume that the rainfall is known exactly. Consequently, they can yield strongly biased and misleading parameter estimates. This deficiency confounds attempts to reliably test model hypotheses, to generalize results across catchments (the regionalization problem) and to quantify predictive uncertainty when the hydrologic model is extrapolated. This paper continues the development of a Bayesian total error analysis (BATEA) methodology for the calibration and identification of hydrologic models, which explicitly incorporates the uncertainty in both the forcing and response data, and allows systematic model comparison based on residual model errors and formal Bayesian hypothesis testing (e.g., using Bayes factors). BATEA is based on explicit stochastic models for both forcing and response uncertainty, whereas current techniques focus solely on response errors. Hence, unlike existing methods, the BATEA parameter equations directly reflect the modeler's confidence in all the data. We compare several approaches to approximating the parameter distributions: a) full Markov Chain Monte Carlo methods and b) simplified approaches based on linear approximations. Studies using synthetic and real data from the US and Australia show that BATEA systematically reduces the parameter bias, leads to more meaningful model fits and allows model comparison taking

  10. [Sensitivity analysis of AnnAGNPS model's hydrology and water quality parameters based on the perturbation analysis method].

    Science.gov (United States)

    Xi, Qing; Li, Zhao-Fu; Luo, Chuan

    2014-05-01

    Sensitivity analysis of hydrology and water quality parameters has a great significance for integrated model's construction and application. Based on AnnAGNPS model's mechanism, terrain, hydrology and meteorology, field management, soil and other four major categories of 31 parameters were selected for the sensitivity analysis in Zhongtian river watershed which is a typical small watershed of hilly region in the Taihu Lake, and then used the perturbation method to evaluate the sensitivity of the parameters to the model's simulation results. The results showed that: in the 11 terrain parameters, LS was sensitive to all the model results, RMN, RS and RVC were generally sensitive and less sensitive to the output of sediment but insensitive to the remaining results. For hydrometeorological parameters, CN was more sensitive to runoff and sediment and relatively sensitive for the rest results. In field management, fertilizer and vegetation parameters, CCC, CRM and RR were less sensitive to sediment and particulate pollutants, the six fertilizer parameters (FR, FD, FID, FOD, FIP, FOP) were particularly sensitive for nitrogen and phosphorus nutrients. For soil parameters, K is quite sensitive to all the results except the runoff, the four parameters of the soil's nitrogen and phosphorus ratio (SONR, SINR, SOPR, SIPR) were less sensitive to the corresponding results. The simulation and verification results of runoff in Zhongtian watershed show a good accuracy with the deviation less than 10% during 2005- 2010. Research results have a direct reference value on AnnAGNPS model's parameter selection and calibration adjustment. The runoff simulation results of the study area also proved that the sensitivity analysis was practicable to the parameter's adjustment and showed the adaptability to the hydrology simulation in the Taihu Lake basin's hilly region and provide reference for the model's promotion in China.

  11. Towards validation of the Canadian precipitation analysis (CaPA) for hydrologic modeling applications in the Canadian Prairies

    Science.gov (United States)

    Boluwade, Alaba; Zhao, K.-Y.; Stadnyk, T. A.; Rasmussen, P.

    2018-01-01

    This study presents a three-step validation technique to compare the performance of the Canadian Precipitation Analysis (CaPA) product relative to actual observation as a hydrologic forcing in regional watershed simulation. CaPA is an interpolated (6 h or 24 h accumulation) reanalysis precipitation product in near real time covering all of North America. The analysis procedure involves point-to-point (P2P) and map-to-map (M2M) comparisons, followed by proxy validation using an operational version of the WATFLOOD™ hydrologic model from 2002 to 2005 in the Lake Winnipeg Basin (LWB), Canada. The P2P technique using a Bayesian change point analysis shows that CaPA corresponds with actual observations (Canadian daily climate data, CDCD), on both an annual and seasonal basis. CaPA has the same spatial pattern, dependency and autocorrelation properties as CDCD pixel by pixel (M2M). When used as hydrologic forcing in WATFLOOD™, results indicate that CaPA is a reliable product for water resource modeling and predictions, but that the quality of CaPA data varies annually and seasonally, as does the quality of observations. CaPA proved most beneficial as a hydrologic forcing during winter seasons where observation quality is the lowest. Reanalysis products, such as CaPA, can be a reliable option in sparse network areas, and is beneficial for regional governments when the cost of new weather stations is prohibitive.

  12. The evolution of process-based hydrologic models

    NARCIS (Netherlands)

    Clark, Martyn P.; Bierkens, Marc F.P.; Samaniego, Luis; Woods, Ross A.; Uijlenhoet, Remko; Bennett, Katrina E.; Pauwels, Valentijn R.N.; Cai, Xitian; Wood, Andrew W.; Peters-Lidard, Christa D.

    2017-01-01

    The diversity in hydrologic models has historically led to great controversy on the "correct" approach to process-based hydrologic modeling, with debates centered on the adequacy of process parameterizations, data limitations and uncertainty, and computational constraints on model analysis. In this

  13. ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts

    Directory of Open Access Journals (Sweden)

    Kim Sun

    2008-03-01

    Full Text Available Abstract Background Once a new genome is sequenced, one of the important questions is to determine the presence and absence of biological pathways. Analysis of biological pathways in a genome is a complicated task since a number of biological entities are involved in pathways and biological pathways in different organisms are not identical. Computational pathway identification and analysis thus involves a number of computational tools and databases and typically done in comparison with pathways in other organisms. This computational requirement is much beyond the capability of biologists, so information systems for reconstructing, annotating, and analyzing biological pathways are much needed. We introduce a new comparative pathway analysis workbench, ComPath, which integrates various resources and computational tools using an interactive spreadsheet-style web interface for reliable pathway analyses. Results ComPath allows users to compare biological pathways in multiple genomes using a spreadsheet style web interface where various sequence-based analysis can be performed either to compare enzymes (e.g. sequence clustering and pathways (e.g. pathway hole identification, to search a genome for de novo prediction of enzymes, or to annotate a genome in comparison with reference genomes of choice. To fill in pathway holes or make de novo enzyme predictions, multiple computational methods such as FASTA, Whole-HMM, CSR-HMM (a method of our own introduced in this paper, and PDB-domain search are integrated in ComPath. Our experiments show that FASTA and CSR-HMM search methods generally outperform Whole-HMM and PDB-domain search methods in terms of sensitivity, but FASTA search performs poorly in terms of specificity, detecting more false positive as E-value cutoff increases. Overall, CSR-HMM search method performs best in terms of both sensitivity and specificity. Gene neighborhood and pathway neighborhood (global network visualization tools can be used

  14. ERM model analysis for adaptation to hydrological model errors

    Science.gov (United States)

    Baymani-Nezhad, M.; Han, D.

    2018-05-01

    Hydrological conditions are changed continuously and these phenomenons generate errors on flood forecasting models and will lead to get unrealistic results. Therefore, to overcome these difficulties, a concept called model updating is proposed in hydrological studies. Real-time model updating is one of the challenging processes in hydrological sciences and has not been entirely solved due to lack of knowledge about the future state of the catchment under study. Basically, in terms of flood forecasting process, errors propagated from the rainfall-runoff model are enumerated as the main source of uncertainty in the forecasting model. Hence, to dominate the exciting errors, several methods have been proposed by researchers to update the rainfall-runoff models such as parameter updating, model state updating, and correction on input data. The current study focuses on investigations about the ability of rainfall-runoff model parameters to cope with three types of existing errors, timing, shape and volume as the common errors in hydrological modelling. The new lumped model, the ERM model, has been selected for this study to evaluate its parameters for its use in model updating to cope with the stated errors. Investigation about ten events proves that the ERM model parameters can be updated to cope with the errors without the need to recalibrate the model.

  15. A Review of Pathway-Based Analysis Tools That Visualize Genetic Variants

    Directory of Open Access Journals (Sweden)

    Elisa Cirillo

    2017-11-01

    Full Text Available Pathway analysis is a powerful method for data analysis in genomics, most often applied to gene expression analysis. It is also promising for single-nucleotide polymorphism (SNP data analysis, such as genome-wide association study data, because it allows the interpretation of variants with respect to the biological processes in which the affected genes and proteins are involved. Such analyses support an interactive evaluation of the possible effects of variations on function, regulation or interaction of gene products. Current pathway analysis software often does not support data visualization of variants in pathways as an alternate method to interpret genetic association results, and specific statistical methods for pathway analysis of SNP data are not combined with these visualization features. In this review, we first describe the visualization options of the tools that were identified by a literature review, in order to provide insight for improvements in this developing field. Tool evaluation was performed using a computational epistatic dataset of gene–gene interactions for obesity risk. Next, we report the necessity to include in these tools statistical methods designed for the pathway-based analysis with SNP data, expressly aiming to define features for more comprehensive pathway-based analysis tools. We conclude by recognizing that pathway analysis of genetic variations data requires a sophisticated combination of the most useful and informative visual aspects of the various tools evaluated.

  16. PathwaySplice: An R package for unbiased pathway analysis of alternative splicing in RNA-Seq data.

    Science.gov (United States)

    Yan, Aimin; Ban, Yuguang; Gao, Zhen; Chen, Xi; Wang, Lily

    2018-04-24

    Pathway analysis of alternative splicing would be biased without accounting for the different number of exons or junctions associated with each gene, because genes with higher number of exons or junctions are more likely to be included in the "significant" gene list in alternative splicing. We present PathwaySplice, an R package that (1) Performs pathway analysis that explicitly adjusts for the number of exons or junctions associated with each gene; (2) Visualizes selection bias due to different number of exons or junctions for each gene and formally tests for presence of bias using logistic regression; (3) Supports gene sets based on the Gene Ontology terms, as well as more broadly defined gene sets (e.g. MSigDB) or user defined gene sets; (4) Identifies the significant genes driving pathway significance and (5) Organizes significant pathways with an enrichment map, where pathways with large number of overlapping genes are grouped together in a network graph. https://bioconductor.org/packages/release/bioc/html/PathwaySplice.html. lily.wangg@gmail.com, xi.steven.chen@gmail.com.

  17. Hydrologic Process-oriented Optimization of Electrical Resistivity Tomography

    Science.gov (United States)

    Hinnell, A.; Bechtold, M.; Ferre, T. A.; van der Kruk, J.

    2010-12-01

    Electrical resistivity tomography (ERT) is commonly used in hydrologic investigations. Advances in joint and coupled hydrogeophysical inversion have enhanced the quantitative use of ERT to construct and condition hydrologic models (i.e. identify hydrologic structure and estimate hydrologic parameters). However the selection of which electrical resistivity data to collect and use is often determined by a combination of data requirements for geophysical analysis, intuition on the part of the hydrogeophysicist and logistical constraints of the laboratory or field site. One of the advantages of coupled hydrogeophysical inversion is the direct link between the hydrologic model and the individual geophysical data used to condition the model. That is, there is no requirement to collect geophysical data suitable for independent geophysical inversion. The geophysical measurements collected can be optimized for estimation of hydrologic model parameters rather than to develop a geophysical model. Using a synthetic model of drip irrigation we evaluate the value of individual resistivity measurements to describe the soil hydraulic properties and then use this information to build a data set optimized for characterizing hydrologic processes. We then compare the information content in the optimized data set with the information content in a data set optimized using a Jacobian sensitivity analysis.

  18. Darwinian hydrology: can the methodology Charles Darwin pioneered help hydrologic science?

    Science.gov (United States)

    Harman, C.; Troch, P. A.

    2013-05-01

    There have been repeated calls for a Darwinian approach to hydrologic science or for a synthesis of Darwinian and Newtonian approaches, to deepen understanding the hydrologic system in the larger landscape context, and so develop a better basis for predictions now and in an uncertain future. But what exactly makes a Darwinian approach to hydrology "Darwinian"? While there have now been a number of discussions of Darwinian approaches, many referencing Harte (2002), the term is potentially a source of confusion while its connections to Darwin remain allusive rather than explicit. Here we discuss the methods that Charles Darwin pioneered to understand a variety of complex systems in terms of their historical processes of change. We suggest that the Darwinian approach to hydrology follows his lead by focusing attention on the patterns of variation in populations, seeking hypotheses that explain these patterns in terms of the mechanisms and conditions that determine their historical development, using deduction and modeling to derive consequent hypotheses that follow from a proposed explanation, and critically testing these hypotheses against new observations. It is not sufficient to catalogue the patterns or predict them statistically. Nor is it sufficient for the explanations to amount to a "just-so" story not subject to critical analysis. Darwin's theories linked present-day variation to mechanisms that operated over history, and could be independently test and falsified by comparing new observations to the predictions of corollary hypotheses they generated. With a Darwinian framework in mind it is easy to see that a great deal of hydrologic research has already been done that contributes to a Darwinian hydrology - whether deliberately or not. The various heuristic methods that Darwin used to develop explanatory theories - extrapolating mechanisms, space for time substitution, and looking for signatures of history - have direct application in hydrologic science. Some

  19. Forest hydrology

    Science.gov (United States)

    Ge Sun; Devendra Amatya; Steve McNulty

    2016-01-01

    Forest hydrology studies the distribution, storage, movement, and quality of water and the hydrological processes in forest-dominated ecosystems. Forest hydrological science is regarded as the foundation of modern integrated water¬shed management. This chapter provides an overview of the history of forest hydrology and basic principles of this unique branch of...

  20. Continuous hydrologic simulation and flood-frequency, hydraulic, and flood-hazard analysis of the Blackberry Creek watershed, Kane County, Illinois

    Science.gov (United States)

    Soong, David T.; Straub, Timothy D.; Murphy, Elizabeth A.

    2006-01-01

    Results of hydrologic model, flood-frequency, hydraulic model, and flood-hazard analysis of the Blackberry Creek watershed in Kane County, Illinois, indicate that the 100-year and 500-year flood plains range from approximately 25 acres in the tributary F watershed (a headwater subbasin at the northeastern corner of the watershed) to almost 1,800 acres in Blackberry Creek main stem. Based on 1996 land-cover data, most of the land in the 100-year and 500-year flood plains was cropland, forested and wooded land, and grassland. A relatively small percentage of urban land was in the flood plains. The Blackberry Creek watershed has undergone rapid urbanization in recent decades. The population and urbanized lands in the watershed are projected to double from the 1990 condition by 2020. Recently, flood-induced damage has occurred more frequently in urbanized areas of the watershed. There are concerns about the effect of urbanization on flood peaks and volumes, future flood-mitigation plans, and potential effects on the water quality and stream habitats. This report describes the procedures used in developing the hydrologic models, estimating the flood-peak discharge magnitudes and recurrence intervals for flood-hazard analysis, developing the hydraulic model, and the results of the analysis in graphical and tabular form. The hydrologic model, Hydrological Simulation Program-FORTRAN (HSPF), was used to perform the simulation of continuous water movements through various patterns of land uses in the watershed. Flood-frequency analysis was applied to an annual maximum series to determine flood quantiles in subbasins for flood-hazard analysis. The Hydrologic Engineering Center-River Analysis System (HEC-RAS) hydraulic model was used to determine the 100-year and 500-year flood elevations, and to determine the 100-year floodway. The hydraulic model was calibrated and verified using high water marks and observed inundation maps for the July 17-18, 1996, flood event. Digital

  1. Creating Data and Modeling Enabled Hydrology Instruction Using Collaborative Approach

    Science.gov (United States)

    Merwade, V.; Rajib, A.; Ruddell, B. L.; Fox, S.

    2017-12-01

    Hydrology instruction typically involves teaching of the hydrologic cycle and the processes associated with it such as precipitation, evapotranspiration, infiltration, runoff generation and hydrograph analysis. With the availability of observed and remotely sensed data related to many hydrologic fluxes, there is an opportunity to use these data for place based learning in hydrology classrooms. However, it is not always easy and possible for an instructor to complement an existing hydrology course with new material that requires both the time and technical expertise, which the instructor may not have. The work presented here describes an effort where students create the data and modeling driven instruction material as a part of their class assignment for a hydrology course at Purdue University. The data driven hydrology education project within Science Education Resources Center (SERC) is used as a platform to publish and share the instruction material so it can be used by future students in the same course or any other course anywhere in the world. Students in the class were divided into groups, and each group was assigned a topic such as precipitation, evapotranspiration, streamflow, flow duration curve and frequency analysis. Each student in the group was then asked to get data and do some analysis for an area with specific landuse characteristic such as urban, rural and agricultural. The student contribution were then organized into learning units such that someone can do a flow duration curve analysis or flood frequency analysis to see how it changes for rural area versus urban area. The hydrology education project within SERC cyberinfrastructure enables any other instructor to adopt this material as is or through modification to suit his/her place based instruction needs.

  2. Pan-cancer analysis of TCGA data reveals notable signaling pathways

    International Nuclear Information System (INIS)

    Neapolitan, Richard; Horvath, Curt M.; Jiang, Xia

    2015-01-01

    A signal transduction pathway (STP) is a network of intercellular information flow initiated when extracellular signaling molecules bind to cell-surface receptors. Many aberrant STPs have been associated with various cancers. To develop optimal treatments for cancer patients, it is important to discover which STPs are implicated in a cancer or cancer-subtype. The Cancer Genome Atlas (TCGA) makes available gene expression level data on cases and controls in ten different types of cancer including breast cancer, colon adenocarcinoma, glioblastoma, kidney renal papillary cell carcinoma, low grade glioma, lung adenocarcinoma, lung squamous cell carcinoma, ovarian carcinoma, rectum adenocarcinoma, and uterine corpus endometriod carcinoma. Signaling Pathway Impact Analysis (SPIA) is a software package that analyzes gene expression data to identify whether a pathway is relevant in a given condition. We present the results of a study that uses SPIA to investigate all 157 signaling pathways in the KEGG PATHWAY database. We analyzed each of the ten cancer types mentioned above separately, and we perform a pan-cancer analysis by grouping the data for all the cancer types. In each analysis several pathways were found to be markedly more significant than all the other pathways. We call them notable. Research has already established a connection between many of these pathways and the corresponding cancer type. However, some of our discovered pathways appear to be new findings. Altogether there were 37 notable findings in the separate analyses, 26 of them occurred in 7 pathways. These 7 pathways included the 4 notable pathways discovered in the pan-cancer analysis. So, our results suggest that these 7 pathways account for much of the mechanisms of cancer. Furthermore, by looking at the overlap among pathways, we identified possible regions on the pathways where the aberrant activity is occurring. We obtained 37 notable findings concerning 18 pathways. Some of them appear to be

  3. The potential of historical hydrology in Switzerland

    International Nuclear Information System (INIS)

    Wetter, Oliver

    2017-01-01

    Historical hydrology is based on data derived from historical written, pictorial and epigraphic documentary sources. It lies at the interface between hydrology and environmental history, using methodologies from both disciplines basically with the goal of significantly extending the instrumental measurement period with experience from the pre-instrumental past. Recently this field of research has gained increased recognition as a tool to improve current flood risk estimations when EU guidelines regulated by law the quantitative consideration of previous floods.1 Awareness to consider pre-instrumental experience in flood risk analysis seems to have risen at the level of local and federal authorities in Switzerland as well. The 2011 Fukushima catastrophe probably fostered this rethinking process, when pressure from the media, society and politics as well as the regulations of the International Atomic Energy Agency (IAEA) forced the authorities to reassess the current flood risk analysis for Swiss nuclear power plants. In 2015 a historical hydrological study was commissioned by the Federal Office for the Environment (FOEN) to assess the magnitudes of pre-instrumental Aare River flood discharges, including the most important tributaries (the Saane, Emme, Reuss and Limmat rivers). The results of the historical hydrological study serve now as the basis for the main study, EXAR (commissioned under the lead of FOEN in cooperation with the Swiss Nuclear Safety Inspectorate (ENSI), the Swiss Federal Office of Energy (SFOE), the Federal Office for Civil Protection (FOCP), and the Federal Office of Meteorology and Climatology (MeteoSwiss)), which combines historical and climatological analysis with statistical approaches and mathematical models with the goal of better understanding the hazards and possible interactions that can be caused by extreme flood events. In a second phase the catchment of the River Rhine will be targeted as well. More recently several local historical

  4. The potential of historical hydrology in Switzerland

    Energy Technology Data Exchange (ETDEWEB)

    Wetter, Oliver [Bern Univ. (Switzerland). Section of Economic, Social and Environmental History (WSU)

    2017-07-01

    Historical hydrology is based on data derived from historical written, pictorial and epigraphic documentary sources. It lies at the interface between hydrology and environmental history, using methodologies from both disciplines basically with the goal of significantly extending the instrumental measurement period with experience from the pre-instrumental past. Recently this field of research has gained increased recognition as a tool to improve current flood risk estimations when EU guidelines regulated by law the quantitative consideration of previous floods.1 Awareness to consider pre-instrumental experience in flood risk analysis seems to have risen at the level of local and federal authorities in Switzerland as well. The 2011 Fukushima catastrophe probably fostered this rethinking process, when pressure from the media, society and politics as well as the regulations of the International Atomic Energy Agency (IAEA) forced the authorities to reassess the current flood risk analysis for Swiss nuclear power plants. In 2015 a historical hydrological study was commissioned by the Federal Office for the Environment (FOEN) to assess the magnitudes of pre-instrumental Aare River flood discharges, including the most important tributaries (the Saane, Emme, Reuss and Limmat rivers). The results of the historical hydrological study serve now as the basis for the main study, EXAR (commissioned under the lead of FOEN in cooperation with the Swiss Nuclear Safety Inspectorate (ENSI), the Swiss Federal Office of Energy (SFOE), the Federal Office for Civil Protection (FOCP), and the Federal Office of Meteorology and Climatology (MeteoSwiss)), which combines historical and climatological analysis with statistical approaches and mathematical models with the goal of better understanding the hazards and possible interactions that can be caused by extreme flood events. In a second phase the catchment of the River Rhine will be targeted as well. More recently several local historical

  5. Primer: Using Watershed Modeling System (WMS) for Gridded Surface Subsurface Hydrologic Analysis (GSSHA) Data Development - WMS 6.1 and GSSHA 1.43C

    National Research Council Canada - National Science Library

    Downer, Charles

    2003-01-01

    This document is a primer for use of the Watershed Modeling System (WMS) interface with the physically based, distributed-parameter hydrologic model Gridded Surface Subsurface Hydrologic Analysis (GSSHA...

  6. Numerical analysis of thermal-hydrological conditions in the single heater test at Yucca Mountain

    International Nuclear Information System (INIS)

    Birkholzer, Jens T.; Tsang, Yvonne W.

    1998-01-01

    The Single Heater Test (SHT) is one of two in-situ thermal tests included in the site characterization program for the potential underground nuclear waste repository at Yucca Mountain. The heating phase of the SHT started in August 1996, and was completed in May 1997 after 9 months of heating. The coupled processes in the unsaturated fractured rock mass around the heater were monitored by numerous sensors for thermal, hydrological, mechanical and chemical data. In addition to passive monitoring, active testing of the rock mass moisture content was performed using geophysical methods and air injection testing. The extensive data set available from this test gives a unique opportunity to improve the understanding of the thermal-hydrological situation in the natural setting of the repository rocks. The present paper focuses on the 3-D numerical simulation of the thermal-hydrological processes in the SHT using TOUGH2. In the comparative analysis, they are particularly interested in the accuracy of different fracture-matrix-interaction concepts such as the Effective Continuum (ECM), the Dual Continuum (DKM), and the Multiple Interacting Continua (MINC) method

  7. RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites.

    Science.gov (United States)

    Zhang, Bofei; Hu, Senyang; Baskin, Elizabeth; Patt, Andrew; Siddiqui, Jalal K; Mathé, Ewy A

    2018-02-22

    The value of metabolomics in translational research is undeniable, and metabolomics data are increasingly generated in large cohorts. The functional interpretation of disease-associated metabolites though is difficult, and the biological mechanisms that underlie cell type or disease-specific metabolomics profiles are oftentimes unknown. To help fully exploit metabolomics data and to aid in its interpretation, analysis of metabolomics data with other complementary omics data, including transcriptomics, is helpful. To facilitate such analyses at a pathway level, we have developed RaMP (Relational database of Metabolomics Pathways), which combines biological pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome, WikiPathways, and the Human Metabolome DataBase (HMDB). To the best of our knowledge, an off-the-shelf, public database that maps genes and metabolites to biochemical/disease pathways and can readily be integrated into other existing software is currently lacking. For consistent and comprehensive analysis, RaMP enables batch and complex queries (e.g., list all metabolites involved in glycolysis and lung cancer), can readily be integrated into pathway analysis tools, and supports pathway overrepresentation analysis given a list of genes and/or metabolites of interest. For usability, we have developed a RaMP R package (https://github.com/Mathelab/RaMP-DB), including a user-friendly RShiny web application, that supports basic simple and batch queries, pathway overrepresentation analysis given a list of genes or metabolites of interest, and network visualization of gene-metabolite relationships. The package also includes the raw database file (mysql dump), thereby providing a stand-alone downloadable framework for public use and integration with other tools. In addition, the Python code needed to recreate the database on another system is also publicly available (https://github.com/Mathelab/RaMP-BackEnd). Updates for databases in RaMP will be

  8. Hydrologic regulation of plant rooting depth.

    Science.gov (United States)

    Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G; Jackson, Robert B; Otero-Casal, Carlos

    2017-10-03

    Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (∼1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

  9. Hydrologic regulation of plant rooting depth

    Science.gov (United States)

    Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G.; Jackson, Robert B.; Otero-Casal, Carlos

    2017-10-01

    Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (˜1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

  10. A hydrological analysis of the 4 November 2011 event in Genoa

    Directory of Open Access Journals (Sweden)

    F. Silvestro

    2012-09-01

    Full Text Available On the 4 November 2011 a flash flood event hit the area of Genoa with dramatic consequences. Such an event represents, from the meteorological and hydrological perspective, a paradigm of flash floods in the Mediterranean environment.

    The hydro-meteorological probabilistic forecasting system for small and medium size catchments in use at the Civil Protection Centre of Liguria region exhibited excellent performances for the event, by predicting, 24–48 h in advance, the potential level of risk associated with the forecast. It greatly helped the decision makers in issuing a timely and correct alert.

    In this work we present the operational outputs of the system provided during the Liguria events and the post event hydrological modelling analysis that has been carried out accounting also for the crowd sourcing information and data. We discuss the benefit of the implemented probabilistic systems for decision-making under uncertainty, highlighting how, in this case, the multi-catchment approach used for predicting floods in small basins has been crucial.

  11. Hydrology

    Science.gov (United States)

    Brutsaert, Wilfried

    2005-08-01

    Water in its different forms has always been a source of wonder, curiosity and practical concern for humans everywhere. Hydrology - An Introduction presents a coherent introduction to the fundamental principles of hydrology, based on the course that Wilfried Brutsaert has taught at Cornell University for the last thirty years. Hydrologic phenomena are dealt with at spatial and temporal scales at which they occur in nature. The physics and mathematics necessary to describe these phenomena are introduced and developed, and readers will require a working knowledge of calculus and basic fluid mechanics. The book will be invaluable as a textbook for entry-level courses in hydrology directed at advanced seniors and graduate students in physical science and engineering. In addition, the book will be more broadly of interest to professional scientists and engineers in hydrology, environmental science, meteorology, agronomy, geology, climatology, oceanology, glaciology and other earth sciences. Emphasis on fundamentals Clarification of the underlying physical processes Applications of fluid mechanics in the natural environment

  12. Detection of Hydrological changes of Wujiang River

    Science.gov (United States)

    Dong, L.; Chen, Y.

    2016-12-01

    In the century our earth experienced a rapid environment changes due to strong human activities, which impactedthe earth'shydrology and water resources systems negatively, and causedsevere problems to the society, such as increased flood and drought risk, water pollution and ecosystem degradation. Understanding the variations of hydrological characteristics has important meaning to solve the problem of hydrology and water resources and maintain sustainable development of river basin water resources.This paper takesWujiangriveras an example,which is a typical medium watershedaffected by human activities seriously in southern China.Using the methods of Mann-Kendall test and serial cluster analysis, this paper studies the characteristics and laws of historical hydrological process inWujiang river, detectsthe impact of changing environment to watershed hydrological processes, based on the observed hydrological data of 36 years from 1980 to 2015 in three representative hydrological stationsnamedFenshi,Chixi and Pingshi. The results show that the annual runoffandannual precipitation has some kind of changes.

  13. Hydrological Process Simulation of Inland River Watershed: A Case Study of the Heihe River Basin with Multiple Hydrological Models

    Directory of Open Access Journals (Sweden)

    Lili Wang

    2018-04-01

    Full Text Available Simulating the hydrological processes of an inland river basin can help provide the scientific guidance to the policies of water allocation among different subbasins and water resource management groups within the subbasins. However, it is difficult to simulate the hydrological processes of an inland river basin with hydrological models due to the non-consistent hydrological characteristics of the entire basin. This study presents a solution to this problem with a case study about the hydrological process simulation in an inland river basin in China, Heihe River basin. It is divided into the upper, middle, and lower reaches based on the distinctive hydrological characteristics in the Heihe River basin, and three hydrological models are selected, applied, and tested to simulate the hydrological cycling processes for each reach. The upper reach is the contributing area with the complex runoff generation processes, therefore, the hydrological informatic modeling system (HIMS is utilized due to its combined runoff generation mechanisms. The middle reach has strong impacts of intensive human activities on the interactions of surface and subsurface flows, so a conceptual water balance model is applied to simulate the water balance process. For the lower reach, as the dissipative area with groundwater dominating the hydrological process, a groundwater modeling system with the embedment of MODFLOW model is applied to simulate the groundwater dynamics. Statistical parameters and water balance analysis prove that the three models have excellent performances in simulating the hydrological process of the three reaches. Therefore, it is an effective way to simulate the hydrological process of inland river basin with multiple hydrological models according to the characteristics of each subbasin.

  14. Multivariate missing data in hydrology - Review and applications

    Science.gov (United States)

    Ben Aissia, Mohamed-Aymen; Chebana, Fateh; Ouarda, Taha B. M. J.

    2017-12-01

    Water resources planning and management require complete data sets of a number of hydrological variables, such as flood peaks and volumes. However, hydrologists are often faced with the problem of missing data (MD) in hydrological databases. Several methods are used to deal with the imputation of MD. During the last decade, multivariate approaches have gained popularity in the field of hydrology, especially in hydrological frequency analysis (HFA). However, treating the MD remains neglected in the multivariate HFA literature whereas the focus has been mainly on the modeling component. For a complete analysis and in order to optimize the use of data, MD should also be treated in the multivariate setting prior to modeling and inference. Imputation of MD in the multivariate hydrological framework can have direct implications on the quality of the estimation. Indeed, the dependence between the series represents important additional information that can be included in the imputation process. The objective of the present paper is to highlight the importance of treating MD in multivariate hydrological frequency analysis by reviewing and applying multivariate imputation methods and by comparing univariate and multivariate imputation methods. An application is carried out for multiple flood attributes on three sites in order to evaluate the performance of the different methods based on the leave-one-out procedure. The results indicate that, the performance of imputation methods can be improved by adopting the multivariate setting, compared to mean substitution and interpolation methods, especially when using the copula-based approach.

  15. PyPathway: Python Package for Biological Network Analysis and Visualization.

    Science.gov (United States)

    Xu, Yang; Luo, Xiao-Chun

    2018-05-01

    Life science studies represent one of the biggest generators of large data sets, mainly because of rapid sequencing technological advances. Biological networks including interactive networks and human curated pathways are essential to understand these high-throughput data sets. Biological network analysis offers a method to explore systematically not only the molecular complexity of a particular disease but also the molecular relationships among apparently distinct phenotypes. Currently, several packages for Python community have been developed, such as BioPython and Goatools. However, tools to perform comprehensive network analysis and visualization are still needed. Here, we have developed PyPathway, an extensible free and open source Python package for functional enrichment analysis, network modeling, and network visualization. The network process module supports various interaction network and pathway databases such as Reactome, WikiPathway, STRING, and BioGRID. The network analysis module implements overrepresentation analysis, gene set enrichment analysis, network-based enrichment, and de novo network modeling. Finally, the visualization and data publishing modules enable users to share their analysis by using an easy web application. For package availability, see the first Reference.

  16. Multi-criteria decision analysis using hydrological indicators for decision support - a conceptual framework.

    Science.gov (United States)

    Butchart-Kuhlmann, Daniel; Kralisch, Sven; Meinhardt, Markus; Fleischer, Melanie

    2017-04-01

    Assessing the quantity and quality of water available in water stressed environments under various potential climate and land-use changes is necessary for good water and environmental resources management and governance. Within the region covered by the Southern African Science Service Centre for Climate Change and Adaptive Land Management (SASSCAL) project, such areas are common. One goal of the SASSCAL project is to develop and provide an integrated decision support system (DSS) with which decision makers (DMs) within a given catchment can obtain objective information regarding potential changes in water flow quantity and timing. The SASSCAL DSS builds upon existing data storage and distribution capability, through the SASSCAL Information System (IS), as well as the J2000 hydrological model. Using output from validated J2000 models, the SASSCAL DSS incorporates the calculation of a range of hydrological indicators based upon Indicators of Hydrological Alteration/Environmental Flow Components (IHA/EFC) calculated for a historic time series (pre-impact) and a set of model simulations based upon a selection of possible climate and land-use change scenarios (post-impact). These indicators, obtained using the IHA software package, are then used as input for a multi-criteria decision analysis (MCDA) undertaken using the open source diviz software package. The results of these analyses will provide DMs with an indication as to how various hydrological indicators within a catchment may be altered under different future scenarios, as well providing a ranking of how each scenario is preferred according to different DM preferences. Scenarios are represented through a combination of model input data and parameter settings in J2000, and preferences are represented through criteria weighting in the MCDA. Here, the methodology is presented and applied to the J2000 Luanginga model results using a set of hypothetical decision maker preference values as input for an MCDA based on

  17. Tritium migration at the Gasbuggy site: Evaluation of possible hydrologic pathways

    International Nuclear Information System (INIS)

    Chapman, J.; Mihevc, T.; Lyles, B.

    1996-09-01

    An underground nuclear test named Gasbuggy was conducted in northwestern New Mexico in 1967. Subsequent groundwater monitoring in an overlying aquifer by the U.S. Environmental Protection Agency revealed increasing levels of tritium in monitoring well EPNG 10-36, located 132 m from the test, suggesting migration of contaminants from the nuclear cavity. There are three basic scenarios that could explain the occurrence of tritium in well 10-36: (1) introduction of tritium into the well from the land surface, (2) migration of tritium through the Ojo Alamo Formation, and (3) migration through the Pictured Cliffs Formation. The two subsurface transport scenarios were evaluated with a travel time analysis. In one, transport occurs to the Ojo Alamo sandstone either up the emplacement hole or through fractures created by the blast, and then laterally through the aquifer to the monitoring well. In the other, lateral transport occurs through fractures in the underlying Pictured Cliffs detonation horizon and then migrates up the monitoring well through plugged casing connecting the two formations. The travel time analysis indicates that the hydraulic conductivity measured in the Ojo Alamo Formation is too low for lateral transport to account for the observed arrival of tritium at the monitoring well. This suggests transport either through fractures intersecting the Ojo Alamo close to well EPNG 10-36, or through fractures in the Pictured Cliffs and up through the bottom plug in the well. The transport scenarios were investigated using hydrologic logging techniques and sampling at the monitoring well, with the fieldwork conducted after the removal of a string of 0.05-m-diameter tubing that had previously provided the only monitoring access

  18. Improving Permafrost Hydrology Prediction Through Data-Model Integration

    Science.gov (United States)

    Wilson, C. J.; Andresen, C. G.; Atchley, A. L.; Bolton, W. R.; Busey, R.; Coon, E.; Charsley-Groffman, L.

    2017-12-01

    The CMIP5 Earth System Models were unable to adequately predict the fate of the 16GT of permafrost carbon in a warming climate due to poor representation of Arctic ecosystem processes. The DOE Office of Science Next Generation Ecosystem Experiment, NGEE-Arctic project aims to reduce uncertainty in the Arctic carbon cycle and its impact on the Earth's climate system by improved representation of the coupled physical, chemical and biological processes that drive how much buried carbon will be converted to CO2 and CH4, how fast this will happen, which form will dominate, and the degree to which increased plant productivity will offset increased soil carbon emissions. These processes fundamentally depend on permafrost thaw rate and its influence on surface and subsurface hydrology through thermal erosion, land subsidence and changes to groundwater flow pathways as soil, bedrock and alluvial pore ice and massive ground ice melts. LANL and its NGEE colleagues are co-developing data and models to better understand controls on permafrost degradation and improve prediction of the evolution of permafrost and its impact on Arctic hydrology. The LANL Advanced Terrestrial Simulator was built using a state of the art HPC software framework to enable the first fully coupled 3-dimensional surface-subsurface thermal-hydrology and land surface deformation simulations to simulate the evolution of the physical Arctic environment. Here we show how field data including hydrology, snow, vegetation, geochemistry and soil properties, are informing the development and application of the ATS to improve understanding of controls on permafrost stability and permafrost hydrology. The ATS is being used to inform parameterizations of complex coupled physical, ecological and biogeochemical processes for implementation in the DOE ACME land model, to better predict the role of changing Arctic hydrology on the global climate system. LA-UR-17-26566.

  19. Network Expansion and Pathway Enrichment Analysis towards Biologically Significant Findings from Microarrays

    Directory of Open Access Journals (Sweden)

    Wu Xiaogang

    2012-06-01

    Full Text Available In many cases, crucial genes show relatively slight changes between groups of samples (e.g. normal vs. disease, and many genes selected from microarray differential analysis by measuring the expression level statistically are also poorly annotated and lack of biological significance. In this paper, we present an innovative approach - network expansion and pathway enrichment analysis (NEPEA for integrative microarray analysis. We assume that organized knowledge will help microarray data analysis in significant ways, and the organized knowledge could be represented as molecular interaction networks or biological pathways. Based on this hypothesis, we develop the NEPEA framework based on network expansion from the human annotated and predicted protein interaction (HAPPI database, and pathway enrichment from the human pathway database (HPD. We use a recently-published microarray dataset (GSE24215 related to insulin resistance and type 2 diabetes (T2D as case study, since this study provided a thorough experimental validation for both genes and pathways identified computationally from classical microarray analysis and pathway analysis. We perform our NEPEA analysis for this dataset based on the results from the classical microarray analysis to identify biologically significant genes and pathways. Our findings are not only consistent with the original findings mostly, but also obtained more supports from other literatures.

  20. Multi-criteria evaluation of hydrological models

    Science.gov (United States)

    Rakovec, Oldrich; Clark, Martyn; Weerts, Albrecht; Hill, Mary; Teuling, Ryan; Uijlenhoet, Remko

    2013-04-01

    Over the last years, there is a tendency in the hydrological community to move from the simple conceptual models towards more complex, physically/process-based hydrological models. This is because conceptual models often fail to simulate the dynamics of the observations. However, there is little agreement on how much complexity needs to be considered within the complex process-based models. One way to proceed to is to improve understanding of what is important and unimportant in the models considered. The aim of this ongoing study is to evaluate structural model adequacy using alternative conceptual and process-based models of hydrological systems, with an emphasis on understanding how model complexity relates to observed hydrological processes. Some of the models require considerable execution time and the computationally frugal sensitivity analysis, model calibration and uncertainty quantification methods are well-suited to providing important insights for models with lengthy execution times. The current experiment evaluates two version of the Framework for Understanding Structural Errors (FUSE), which both enable running model inter-comparison experiments. One supports computationally efficient conceptual models, and the second supports more-process-based models that tend to have longer execution times. The conceptual FUSE combines components of 4 existing conceptual hydrological models. The process-based framework consists of different forms of Richard's equations, numerical solutions, groundwater parameterizations and hydraulic conductivity distribution. The hydrological analysis of the model processes has evolved from focusing only on simulated runoff (final model output), to also including other criteria such as soil moisture and groundwater levels. Parameter importance and associated structural importance are evaluated using different types of sensitivity analyses techniques, making use of both robust global methods (e.g. Sobol') as well as several

  1. Hydrology Project

    International Nuclear Information System (INIS)

    Anon.

    Research carried out in the 'Hydrology Project' of the Centro de Energia Nuclear na Agricultura', Piracicaba, Sao Paulo State, Brazil, are described. Such research comprises: Amazon hydrology and Northeast hydrology. Techniques for the measurement of isotope ratios are used. (M.A.) [pt

  2. The potential of historical hydrology in Switzerland

    Directory of Open Access Journals (Sweden)

    O. Wetter

    2017-11-01

    Full Text Available Historical hydrology is based on data derived from historical written, pictorial and epigraphic documentary sources. It lies at the interface between hydrology and environmental history, using methodologies from both disciplines basically with the goal of significantly extending the instrumental measurement period with experience from the pre-instrumental past. Recently this field of research has gained increased recognition as a tool to improve current flood risk estimations when EU guidelines regulated by law the quantitative consideration of previous floods.1 Awareness to consider pre-instrumental experience in flood risk analysis seems to have risen at the level of local and federal authorities in Switzerland as well. The 2011 Fukushima catastrophe probably fostered this rethinking process, when pressure from the media, society and politics as well as the regulations of the International Atomic Energy Agency (IAEA forced the authorities to reassess the current flood risk analysis for Swiss nuclear power plants. In 2015 a historical hydrological study was commissioned by the Federal Office for the Environment (FOEN to assess the magnitudes of pre-instrumental Aare River flood discharges, including the most important tributaries (the Saane, Emme, Reuss and Limmat rivers. The results of the historical hydrological study serve now as the basis for the main study, EXAR (commissioned under the lead of FOEN in cooperation with the Swiss Nuclear Safety Inspectorate (ENSI, the Swiss Federal Office of Energy (SFOE, the Federal Office for Civil Protection (FOCP, and the Federal Office of Meteorology and Climatology (MeteoSwiss, which combines historical and climatological analysis with statistical approaches and mathematical models with the goal of better understanding the hazards and possible interactions that can be caused by extreme flood events. In a second phase the catchment of the River Rhine will be targeted as well. More recently several local

  3. The potential of historical hydrology in Switzerland

    Science.gov (United States)

    Wetter, Oliver

    2017-11-01

    Historical hydrology is based on data derived from historical written, pictorial and epigraphic documentary sources. It lies at the interface between hydrology and environmental history, using methodologies from both disciplines basically with the goal of significantly extending the instrumental measurement period with experience from the pre-instrumental past. Recently this field of research has gained increased recognition as a tool to improve current flood risk estimations when EU guidelines regulated by law the quantitative consideration of previous floods.1 Awareness to consider pre-instrumental experience in flood risk analysis seems to have risen at the level of local and federal authorities in Switzerland as well. The 2011 Fukushima catastrophe probably fostered this rethinking process, when pressure from the media, society and politics as well as the regulations of the International Atomic Energy Agency (IAEA) forced the authorities to reassess the current flood risk analysis for Swiss nuclear power plants. In 2015 a historical hydrological study was commissioned by the Federal Office for the Environment (FOEN) to assess the magnitudes of pre-instrumental Aare River flood discharges, including the most important tributaries (the Saane, Emme, Reuss and Limmat rivers). The results of the historical hydrological study serve now as the basis for the main study, EXAR (commissioned under the lead of FOEN in cooperation with the Swiss Nuclear Safety Inspectorate (ENSI), the Swiss Federal Office of Energy (SFOE), the Federal Office for Civil Protection (FOCP), and the Federal Office of Meteorology and Climatology (MeteoSwiss)), which combines historical and climatological analysis with statistical approaches and mathematical models with the goal of better understanding the hazards and possible interactions that can be caused by extreme flood events. In a second phase the catchment of the River Rhine will be targeted as well. More recently several local historical

  4. Hydrological behaviour and water balance analysis for Xitiaoxi catchment of Taihu Basin

    Directory of Open Access Journals (Sweden)

    Xue Lijuan

    2008-09-01

    Full Text Available With the rapid social and economic development of the Taihu region, Taihu Lake now faces an increasingly severe eutrophication problem. Pollution from surrounding catchments contributes greatly to the eutrophication of water bodies in the region. Investigation of surface flow and associated mass transport for the Xitiaoxi catchment is of a significant degree of importance as the Xitiaoxi catchment is one of the major catchments within the Taihu region. A SWAT-based distributed hydrological model was established for the Xitiaoxi catchment. The model was calibrated and verified using hydrometeorological data from 1988 to 2001. The results indicate that the modeled daily and annual stream flow match the observed data both in the calibration period and the verification period, with a linear regression coefficient R2 and a coefficient e for modeled daily stream flow greater than 0.8 at Hengtangcun and Fanjiacun gauge stations. The results show that the runoff process in the Xitiaoxi catchment is affected both by rainfall and human activities (e.g., reservoirs and polder areas. Moreover, the human activities weaken flood peaks more noticeably during rainstorms. The water balance analysis reveals the percentages of precipitation made up by surface flow, evapotranspiration, groundwater recharge and the change of soil storage, all of which are considered useful to the further understanding of the hydrological processes in the Xitiaoxi catchment. This study provides a good base for further studies in mass transport modeling and comparison of modeling results from similar hydrological models.

  5. Hydrologic Drought Decision Support System (HyDroDSS)

    Science.gov (United States)

    Granato, Gregory E.

    2014-01-01

    The hydrologic drought decision support system (HyDroDSS) was developed by the U.S. Geological Survey (USGS) in cooperation with the Rhode Island Water Resources Board (RIWRB) for use in the analysis of hydrologic variables that may indicate the risk for streamflows to be below user-defined flow targets at a designated site of interest, which is defined herein as data-collection site on a stream that may be adversely affected by pumping. Hydrologic drought is defined for this study as a period of lower than normal streamflows caused by precipitation deficits and (or) water withdrawals. The HyDroDSS is designed to provide water managers with risk-based information for balancing water-supply needs and aquatic-habitat protection goals to mitigate potential effects of hydrologic drought. This report describes the theory and methods for retrospective streamflow-depletion analysis, rank correlation analysis, and drought-projection analysis. All three methods are designed to inform decisions made by drought steering committees and decisionmakers on the basis of quantitative risk assessment. All three methods use estimates of unaltered streamflow, which is the measured or modeled flow without major withdrawals or discharges, to approximate a natural low-flow regime. Retrospective streamflow-depletion analysis can be used by water-resource managers to evaluate relations between withdrawal plans and the potential effects of withdrawal plans on streams at one or more sites of interest in an area. Retrospective streamflow-depletion analysis indicates the historical risk of being below user-defined flow targets if different pumping plans were implemented for the period of record. Retrospective streamflow-depletion analysis also indicates the risk for creating hydrologic drought conditions caused by use of a pumping plan. Retrospective streamflow-depletion analysis is done by calculating the net streamflow depletions from withdrawals and discharges and applying these depletions

  6. Pathway Analysis in Attention Deficit Hyperactivity Disorder: An Ensemble Approach

    Science.gov (United States)

    Mooney, Michael A.; McWeeney, Shannon K.; Faraone, Stephen V.; Hinney, Anke; Hebebrand, Johannes; Nigg, Joel T.; Wilmot, Beth

    2016-01-01

    Despite a wealth of evidence for the role of genetics in attention deficit hyperactivity disorder (ADHD), specific and definitive genetic mechanisms have not been identified. Pathway analyses, a subset of gene-set analyses, extend the knowledge gained from genome-wide association studies (GWAS) by providing functional context for genetic associations. However, there are numerous methods for association testing of gene sets and no real consensus regarding the best approach. The present study applied six pathway analysis methods to identify pathways associated with ADHD in two GWAS datasets from the Psychiatric Genomics Consortium. Methods that utilize genotypes to model pathway-level effects identified more replicable pathway associations than methods using summary statistics. In addition, pathways implicated by more than one method were significantly more likely to replicate. A number of brain-relevant pathways, such as RhoA signaling, glycosaminoglycan biosynthesis, fibroblast growth factor receptor activity, and pathways containing potassium channel genes, were nominally significant by multiple methods in both datasets. These results support previous hypotheses about the role of regulation of neurotransmitter release, neurite outgrowth and axon guidance in contributing to the ADHD phenotype and suggest the value of cross-method convergence in evaluating pathway analysis results. PMID:27004716

  7. RIMS: An Integrated Mapping and Analysis System with Applications to Earth Sciences and Hydrology

    Science.gov (United States)

    Proussevitch, A. A.; Glidden, S.; Shiklomanov, A. I.; Lammers, R. B.

    2011-12-01

    A web-based information and computational system for analysis of spatially distributed Earth system, climate, and hydrologic data have been developed. The System allows visualization, data exploration, querying, manipulation and arbitrary calculations with any loaded gridded or vector polygon dataset. The system's acronym, RIMS, stands for its core functionality as a Rapid Integrated Mapping System. The system can be deployed for a Global scale projects as well as for regional hydrology and climatology studies. In particular, the Water Systems Analysis Group of the University of New Hampshire developed the global and regional (Northern Eurasia, pan-Arctic) versions of the system with different map projections and specific data. The system has demonstrated its potential for applications in other fields of Earth sciences and education. The key Web server/client components of the framework include (a) a visualization engine built on Open Source libraries (GDAL, PROJ.4, etc.) that are utilized in a MapServer; (b) multi-level data querying tools built on XML server-client communication protocols that allow downloading map data on-the-fly to a client web browser; and (c) data manipulation and grid cell level calculation tools that mimic desktop GIS software functionality via a web interface. Server side data management of the system is designed around a simple database of dataset metadata facilitating mounting of new data to the system and maintaining existing data in an easy manner. RIMS contains "built-in" river network data that allows for query of upstream areas on-demand which can be used for spatial data aggregation and analysis of sub-basin areas. RIMS is an ongoing effort and currently being used to serve a number of websites hosting a suite of hydrologic, environmental and other GIS data.

  8. Resilience of Socio-Hydrological Systems in Canadian Prairies to Agricultural Drainage: Policy Analysis and Modelling Approach

    Science.gov (United States)

    Wheater, H. S.; Xu, L.; Gober, P.; Pomeroy, J. W.; Wong, J.

    2017-12-01

    Extensive agricultural drainage of lakes and wetlands in the Canadian Prairies has led to benefits for agricultural production, but has had a substantial influence on hydrological regimes and wetland extent. There is need for the potential impacts of current policy in changing the socio-hydrological resilience of prairie wetland basins in response to agricultural drainage to be examined. Whilst wetland drainage can increase agricultural productivity, it can also reduce stocks of natural capital and decrease ecosystem services, such as pollutant retention, habitat for waterfowls, carbon sequestration, and downstream flood attenuation. Effective policies that balance drainage benefits and negative externalities have to consider pricing. This is explored here using the Cold Regions Hydrological Model for hydrological simulations and the Inclusive Wealth approach for modelling in support of cost-benefit analysis. Inclusive wealth aggregates the value of natural, human, and technological assets used to produce social welfare. A shadow price, defined as the marginal change in social value for a marginal change in the current stock quantity, is used to valuate assets that contribute to social welfare. The shadow price of each asset is estimated by taking into account the social and economic benefits and external losses of wetland services caused by wetland drainage. The coupled model was applied to the Smith Creek Research Basin in south-eastern Saskatchewan, Canada where wetland drainage has caused major alterations of the hydrological regime including increased peak flows, discharge volumes and duration of streamflow. Changes in depressional storage in wetlands was used to calculate the corresponding changes of inclusive wealth over a 30-year period under the impacts from the limitation proposed in the Agricultural Water Management Strategy of Saskatchewan. The adjusted societal values of drainage demonstrate the dynamics between changes in hydrological conditions of

  9. A two-stage method of quantitative flood risk analysis for reservoir real-time operation using ensemble-based hydrologic forecasts

    Science.gov (United States)

    Liu, P.

    2013-12-01

    Quantitative analysis of the risk for reservoir real-time operation is a hard task owing to the difficulty of accurate description of inflow uncertainties. The ensemble-based hydrologic forecasts directly depict the inflows not only the marginal distributions but also their persistence via scenarios. This motivates us to analyze the reservoir real-time operating risk with ensemble-based hydrologic forecasts as inputs. A method is developed by using the forecast horizon point to divide the future time into two stages, the forecast lead-time and the unpredicted time. The risk within the forecast lead-time is computed based on counting the failure number of forecast scenarios, and the risk in the unpredicted time is estimated using reservoir routing with the design floods and the reservoir water levels of forecast horizon point. As a result, a two-stage risk analysis method is set up to quantify the entire flood risks by defining the ratio of the number of scenarios that excessive the critical value to the total number of scenarios. The China's Three Gorges Reservoir (TGR) is selected as a case study, where the parameter and precipitation uncertainties are implemented to produce ensemble-based hydrologic forecasts. The Bayesian inference, Markov Chain Monte Carlo, is used to account for the parameter uncertainty. Two reservoir operation schemes, the real operated and scenario optimization, are evaluated for the flood risks and hydropower profits analysis. With the 2010 flood, it is found that the improvement of the hydrologic forecast accuracy is unnecessary to decrease the reservoir real-time operation risk, and most risks are from the forecast lead-time. It is therefore valuable to decrease the avarice of ensemble-based hydrologic forecasts with less bias for a reservoir operational purpose.

  10. Dysregulated Pathway Identification of Alzheimer's Disease Based on Internal Correlation Analysis of Genes and Pathways.

    Science.gov (United States)

    Kong, Wei; Mou, Xiaoyang; Di, Benteng; Deng, Jin; Zhong, Ruxing; Wang, Shuaiqun

    2017-11-20

    Dysregulated pathway identification is an important task which can gain insight into the underlying biological processes of disease. Current pathway-identification methods focus on a set of co-expression genes and single pathways and ignore the correlation between genes and pathways. The method proposed in this study, takes into account the internal correlations not only between genes but also pathways to identifying dysregulated pathways related to Alzheimer's disease (AD), the most common form of dementia. In order to find the significantly differential genes for AD, mutual information (MI) is used to measure interdependencies between genes other than expression valves. Then, by integrating the topology information from KEGG, the significant pathways involved in the feature genes are identified. Next, the distance correlation (DC) is applied to measure the pairwise pathway crosstalks since DC has the advantage of detecting nonlinear correlations when compared to Pearson correlation. Finally, the pathway pairs with significantly different correlations between normal and AD samples are known as dysregulated pathways. The molecular biology analysis demonstrated that many dysregulated pathways related to AD pathogenesis have been discovered successfully by the internal correlation detection. Furthermore, the insights of the dysregulated pathways in the development and deterioration of AD will help to find new effective target genes and provide important theoretical guidance for drug design. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

  11. Hydrology Analysis and Modelling for Klang River Basin Flood Hazard Map

    Science.gov (United States)

    Sidek, L. M.; Rostam, N. E.; Hidayah, B.; Roseli, ZA; Majid, W. H. A. W. A.; Zahari, N. Z.; Salleh, S. H. M.; Ahmad, R. D. R.; Ahmad, M. N.

    2016-03-01

    Flooding, a common environmental hazard worldwide has in recent times, increased as a result of climate change and urbanization with the effects felt more in developing countries. As a result, the explosive of flooding to Tenaga Nasional Berhad (TNB) substation is increased rapidly due to existing substations are located in flood prone area. By understanding the impact of flood to their substation, TNB has provided the non-structure mitigation with the integration of Flood Hazard Map with their substation. Hydrology analysis is the important part in providing runoff as the input for the hydraulic part.

  12. Data assimilation in hydrological modelling

    DEFF Research Database (Denmark)

    Drecourt, Jean-Philippe

    Data assimilation is an invaluable tool in hydrological modelling as it allows to efficiently combine scarce data with a numerical model to obtain improved model predictions. In addition, data assimilation also provides an uncertainty analysis of the predictions made by the hydrological model....... In this thesis, the Kalman filter is used for data assimilation with a focus on groundwater modelling. However the developed techniques are general and can be applied also in other modelling domains. Modelling involves conceptualization of the processes of Nature. Data assimilation provides a way to deal...... with model non-linearities and biased errors. A literature review analyzes the most popular techniques and their application in hydrological modelling. Since bias is an important problem in groundwater modelling, two bias aware Kalman filters have been implemented and compared using an artificial test case...

  13. Evaluating Hydrologic Response of an Agricultural Watershed for Watershed Analysis

    OpenAIRE

    Manoj Kumar Jha

    2011-01-01

    This paper describes the hydrological assessment of an agricultural watershed in the Midwestern United States through the use of a watershed scale hydrologic model. The Soil and Water Assessment Tool (SWAT) model was applied to the Maquoketa River watershed, located in northeast Iowa, draining an agriculture intensive area of about 5,000 km2. The inputs to the model were obtained from the Environmental Protection Agency’s geographic information/database system called Better Assessment Science...

  14. Hydrological system dynamics of glaciated Karnali River Basin Nepal Himalaya using J2000 Hydrological model

    Science.gov (United States)

    Khatiwada, K. R.; Nepal, S.; Panthi, J., Sr.; Shrestha, M.

    2015-12-01

    Hydrological modelling plays an important role in understanding hydrological processes of a catchment. In the context of climate change, the understanding of hydrological characteristic of the catchment is very vital to understand how the climate change will affect the hydrological regime. This research facilitates in better understanding of the hydrological system dynamics of a himalayan mountainous catchment in western Nepal. The Karnali River, longest river flowing inside Nepal, is one of the three major basins of Nepal, having the area of 45269 sq. km. is unique. The basin has steep topography and high mountains to the northern side. The 40% of the basin is dominated by forest land while other land cover are: grass land, bare rocky land etc. About 2% of the areas in basin is covered by permanent glacier apart from that about 12% of basin has the snow and ice cover. There are 34 meteorological stations distributed across the basin. A process oriented distributed J2000 hydrologial model has been applied to understand the hydrological system dynamics. The model application provides distributed output of various hydrological components. The J2000 model applies Hydrological Response Unit (HRU) as a modelling entity. With 6861 HRU and 1010 reaches, the model was calibrated (1981-1999) and validated (2000-2004) at a daily scale using split-sample test. The model is able to capture the overall hydrological dynamics well. The rising limbs and recession limbs are simulated equally and with satisfactory ground water conditions. Based on the graphical and statistical evaluation of the model performance the model is able to simulate hydrological processes fairly well. Calibration shows that Nash Sutcliffe efficiency is 0.91, coefficient of determination is 0.92 Initial observation shows that during the pre-monsoon season(March to May) the glacial runoff is 25% of the total discharge while in the monsoon(June to September) season it is only 13%. The surface runoff

  15. Conceptual framework and trend analysis of water-level responses to hydrologic stresses, Pahute Mesa–Oasis Valley groundwater basin, Nevada, 1966-2016

    Science.gov (United States)

    Jackson, Tracie R.; Fenelon, Joseph M.

    2018-05-31

    This report identifies water-level trends in wells and provides a conceptual framework that explains the hydrologic stresses and factors causing the trends in the Pahute Mesa–Oasis Valley (PMOV) groundwater basin, southern Nevada. Water levels in 79 wells were analyzed for trends between 1966 and 2016. The magnitude and duration of water-level responses to hydrologic stresses were analyzed graphically, statistically, and with water-level models.The conceptual framework consists of multiple stress-specific conceptual models to explain water-level responses to the following hydrologic stresses: recharge, evapotranspiration, pumping, nuclear testing, and wellbore equilibration. Dominant hydrologic stresses affecting water-level trends in each well were used to categorize trends as nonstatic, transient, or steady state.The conceptual framework of water-level responses to hydrologic stresses and trend analyses provide a comprehensive understanding of the PMOV basin and vicinity. The trend analysis links water-level fluctuations in wells to hydrologic stresses and potential factors causing the trends. Transient and steady-state trend categorizations can be used to determine the appropriate water-level data for groundwater studies.

  16. [Socio-hydrology: A review].

    Science.gov (United States)

    Ding, Jing-yi; Zhao, Wen-wu; Fang, Xue-ning

    2015-04-01

    Socio-hydrology is an interdiscipline of hydrology, nature, society and humanity. It mainly explores the two-way feedbacks of coupled human-water system and its dynamic mechanism of co-evolution, and makes efforts to solve the issues that human faces today such as sustainable utilization of water resources. Starting from the background, formation process, and fundamental concept of socio-hydrology, this paper summarized the features of socio-hydrology. The main research content of socio-hydrology was reduced to three aspects: The tradeoff in coupled human-water system, interests in water resources management and virtual water research in coupled human-water system. And its differences as well as relations with traditional hydrology, eco-hydrology and hydro-sociology were dwelled on. Finally, with hope to promote the development of socio-hydrology researches in China, the paper made prospects for the development of the subject from following aspects: Completing academic content and deepening quantitative research, focusing on scale studies of socio-hydrology, fusing socio-hydrology and eco-hydrology.

  17. Hydrology and Oceanography Analysis Regarding The NPP Site Screening Process at Banten Province

    International Nuclear Information System (INIS)

    Yarianto-S-Budi-Susilo

    2007-01-01

    Regarding the NPP development in the future, it is needed to make inventory of potential site in the Java Island as well as in the outside Java Island. The NPP site inventory availability is to answer the energy demand challenge. Site screening process should be performed in accordance with the IAEA safety standard regarding the site selection, investigating several aspects related to the NPP safety (exclusion, safety and suitability factor) in the large area to obtain potential site candidates. For the site survey stage of hydrology and oceanography aspects, the analysis are more focused on the tidal phenomena along the north coastline, bathymetry, water resource, and hydrology system in the Banten Province. The method used are secondary data collection, field confirmation and internet searching. The result of the study showed that Tanjung Pujut and Tanjung Pasir are suitable based on the bathymetry and water intake facility consideration. Meanwhile Tanjung Kait and Tanjung Pasir more suitable considering tsunami aspects that may be generated by Krakatau Volcano. (author)

  18. A "total parameter estimation" method in the varification of distributed hydrological models

    Science.gov (United States)

    Wang, M.; Qin, D.; Wang, H.

    2011-12-01

    Conventionally hydrological models are used for runoff or flood forecasting, hence the determination of model parameters are common estimated based on discharge measurements at the catchment outlets. With the advancement in hydrological sciences and computer technology, distributed hydrological models based on the physical mechanism such as SWAT, MIKESHE, and WEP, have gradually become the mainstream models in hydrology sciences. However, the assessments of distributed hydrological models and model parameter determination still rely on runoff and occasionally, groundwater level measurements. It is essential in many countries, including China, to understand the local and regional water cycle: not only do we need to simulate the runoff generation process and for flood forecasting in wet areas, we also need to grasp the water cycle pathways and consumption process of transformation in arid and semi-arid regions for the conservation and integrated water resources management. As distributed hydrological model can simulate physical processes within a catchment, we can get a more realistic representation of the actual water cycle within the simulation model. Runoff is the combined result of various hydrological processes, using runoff for parameter estimation alone is inherits problematic and difficult to assess the accuracy. In particular, in the arid areas, such as the Haihe River Basin in China, runoff accounted for only 17% of the rainfall, and very concentrated during the rainy season from June to August each year. During other months, many of the perennial rivers within the river basin dry up. Thus using single runoff simulation does not fully utilize the distributed hydrological model in arid and semi-arid regions. This paper proposed a "total parameter estimation" method to verify the distributed hydrological models within various water cycle processes, including runoff, evapotranspiration, groundwater, and soil water; and apply it to the Haihe river basin in

  19. The progress of hydrology

    Energy Technology Data Exchange (ETDEWEB)

    Chow, V T [University of Illinois, Urbana, IL (United States)

    1967-05-15

    This paper discusses mainly the challenge of hydrology, recent activities, events, and major problems in hydrology, and advances in hydrological techniques. New scientific knowledge and techniques developed in many modern scientific disciplines, and the recognition of the importance of hydrology in water-resources development enable and encourage the hydrologist to advance scientific hydrology. Many programmes to promote hydrology and to expand its attendant activities have been developed in recent years. Therefore, the activities in the United States of America, such as the Universities Council on Water Resources and the President's Water for Peace Programme, and the programmes in the International Hydrological Decade are mentioned. The most important advance in theoretical hydrology is the development of a new concept of dynamic sequential systems for the hydrological cycle, thus creating new fields of systems, parametric, and stochastic hydrology. Modern scientific instrumentation provide the hydrologist with better tools for solving his problems. The most important of these, such as electronic computers, remote sensing, and nuclear techniques are discussed. Today various major problems, both theoretical and practical, face the hydrologist. Theoretical problems concern the basic understanding of hydrological systems and the mathematical simulation and physical interpretation of hydrological phenomena. Major practical problems are numerous and diversified, but they are mostly related to the multiple-purpose development of water resources. Four central problematical subjects are discussed; namely, the effects of man on his environment, the dynamics of aqueous flow systems, hydrological transport mechanism, and groundwater hydrology. Also, the use of nuclear techniques in solving various hydrological problems is discussed. It is believed that the application of nuclear techniques would prove extremely valuable in helping solve problems, but their ultimate use in

  20. The progress of hydrology

    International Nuclear Information System (INIS)

    Chow, V.T.

    1967-01-01

    This paper discusses mainly the challenge of hydrology, recent activities, events, and major problems in hydrology, and advances in hydrological techniques. New scientific knowledge and techniques developed in many modern scientific disciplines, and the recognition of the importance of hydrology in water-resources development enable and encourage the hydrologist to advance scientific hydrology. Many programmes to promote hydrology and to expand its attendant activities have been developed in recent years. Therefore, the activities in the United States of America, such as the Universities Council on Water Resources and the President's Water for Peace Programme, and the programmes in the International Hydrological Decade are mentioned. The most important advance in theoretical hydrology is the development of a new concept of dynamic sequential systems for the hydrological cycle, thus creating new fields of systems, parametric, and stochastic hydrology. Modern scientific instrumentation provide the hydrologist with better tools for solving his problems. The most important of these, such as electronic computers, remote sensing, and nuclear techniques are discussed. Today various major problems, both theoretical and practical, face the hydrologist. Theoretical problems concern the basic understanding of hydrological systems and the mathematical simulation and physical interpretation of hydrological phenomena. Major practical problems are numerous and diversified, but they are mostly related to the multiple-purpose development of water resources. Four central problematical subjects are discussed; namely, the effects of man on his environment, the dynamics of aqueous flow systems, hydrological transport mechanism, and groundwater hydrology. Also, the use of nuclear techniques in solving various hydrological problems is discussed. It is believed that the application of nuclear techniques would prove extremely valuable in helping solve problems, but their ultimate use in

  1. OLAP Cube Visualization of Hydrologic Data Catalogs

    Science.gov (United States)

    Zaslavsky, I.; Rodriguez, M.; Beran, B.; Valentine, D.; van Ingen, C.; Wallis, J. C.

    2007-12-01

    As part of the CUAHSI Hydrologic Information System project, we assemble comprehensive observations data catalogs that support CUAHSI data discovery services (WaterOneFlow services) and online mapping interfaces (e.g. the Data Access System for Hydrology, DASH). These catalogs describe several nation-wide data repositories that are important for hydrologists, including USGS NWIS and EPA STORET data collections. The catalogs contain a wealth of information reflecting the entire history and geography of hydrologic observations in the US. Managing such catalogs requires high performance analysis and visualization technologies. OLAP (Online Analytical Processing) cube, often called data cubes, is an approach to organizing and querying large multi-dimensional data collections. We have applied the OLAP techniques, as implemented in Microsoft SQL Server 2005, to the analysis of the catalogs from several agencies. In this initial report, we focus on the OLAP technology as applied to catalogs, and preliminary results of the analysis. Specifically, we describe the challenges of generating OLAP cube dimensions, and defining aggregations and views for data catalogs as opposed to observations data themselves. The initial results are related to hydrologic data availability from the observations data catalogs. The results reflect geography and history of available data totals from USGS NWIS and EPA STORET repositories, and spatial and temporal dynamics of available measurements for several key nutrient-related parameters.

  2. Pathway analysis for alternate low-level waste disposal methods

    International Nuclear Information System (INIS)

    Rao, R.R.; Kozak, M.W.; McCord, J.T.; Olague, N.E.

    1992-01-01

    The purpose of this paper is to evaluate a complete set of environmental pathways for disposal options and conditions that the Nuclear Regulatory Commission (NRC) may analyze for a low-level radioactive waste (LLW) license application. The regulations pertaining In the past, shallow-land burial has been used for the disposal of low-level radioactive waste. However, with the advent of the State Compact system of LLW disposal, many alternative technologies may be used. The alternative LLW disposal facilities include below- ground vault, tumulus, above-ground vault, shaft, and mine disposal This paper will form the foundation of an update of the previously developed Sandia National Laboratories (SNL)/NRC LLW performance assessment methodology. Based on the pathway assessment for alternative disposal methods, a determination will be made about whether the current methodology can satisfactorily analyze the pathways and phenomena likely to be important for the full range of potential disposal options. We have attempted to be conservative in keeping pathways in the lists that may usually be of marginal importance. In this way we can build confidence that we have spanned the range of cases likely to be encountered at a real site. Results of the pathway assessment indicate that disposal methods can be categorized in groupings based on their depth of disposal. For the deep disposal options of shaft and mine disposal, the key pathways are identical. The shallow disposal options, such as tumulus, shallow-land, and below-ground vault disposal also may be grouped together from a pathway analysis perspective. Above-ground vault disposal cannot be grouped with any of the other disposal options. The pathway analysis shows a definite trend concerning depth of disposal. The above-ground option has the largest number of significant pathways. As the waste becomes more isolated, the number of significant pathways is reduced. Similar to shallow-land burial, it was found that for all

  3. Identifying novel glioma associated pathways based on systems biology level meta-analysis.

    Science.gov (United States)

    Hu, Yangfan; Li, Jinquan; Yan, Wenying; Chen, Jiajia; Li, Yin; Hu, Guang; Shen, Bairong

    2013-01-01

    With recent advances in microarray technology, including genomics, proteomics, and metabolomics, it brings a great challenge for integrating this "-omics" data to analysis complex disease. Glioma is an extremely aggressive and lethal form of brain tumor, and thus the study of the molecule mechanism underlying glioma remains very important. To date, most studies focus on detecting the differentially expressed genes in glioma. However, the meta-analysis for pathway analysis based on multiple microarray datasets has not been systematically pursued. In this study, we therefore developed a systems biology based approach by integrating three types of omics data to identify common pathways in glioma. Firstly, the meta-analysis has been performed to study the overlapping of signatures at different levels based on the microarray gene expression data of glioma. Among these gene expression datasets, 12 pathways were found in GeneGO database that shared by four stages. Then, microRNA expression profiles and ChIP-seq data were integrated for the further pathway enrichment analysis. As a result, we suggest 5 of these pathways could be served as putative pathways in glioma. Among them, the pathway of TGF-beta-dependent induction of EMT via SMAD is of particular importance. Our results demonstrate that the meta-analysis based on systems biology level provide a more useful approach to study the molecule mechanism of complex disease. The integration of different types of omics data, including gene expression microarrays, microRNA and ChIP-seq data, suggest some common pathways correlated with glioma. These findings will offer useful potential candidates for targeted therapeutic intervention of glioma.

  4. Sensitivity analysis of machine-learning models of hydrologic time series

    Science.gov (United States)

    O'Reilly, A. M.

    2017-12-01

    Sensitivity analysis traditionally has been applied to assessing model response to perturbations in model parameters, where the parameters are those model input variables adjusted during calibration. Unlike physics-based models where parameters represent real phenomena, the equivalent of parameters for machine-learning models are simply mathematical "knobs" that are automatically adjusted during training/testing/verification procedures. Thus the challenge of extracting knowledge of hydrologic system functionality from machine-learning models lies in their very nature, leading to the label "black box." Sensitivity analysis of the forcing-response behavior of machine-learning models, however, can provide understanding of how the physical phenomena represented by model inputs affect the physical phenomena represented by model outputs.As part of a previous study, hybrid spectral-decomposition artificial neural network (ANN) models were developed to simulate the observed behavior of hydrologic response contained in multidecadal datasets of lake water level, groundwater level, and spring flow. Model inputs used moving window averages (MWA) to represent various frequencies and frequency-band components of time series of rainfall and groundwater use. Using these forcing time series, the MWA-ANN models were trained to predict time series of lake water level, groundwater level, and spring flow at 51 sites in central Florida, USA. A time series of sensitivities for each MWA-ANN model was produced by perturbing forcing time-series and computing the change in response time-series per unit change in perturbation. Variations in forcing-response sensitivities are evident between types (lake, groundwater level, or spring), spatially (among sites of the same type), and temporally. Two generally common characteristics among sites are more uniform sensitivities to rainfall over time and notable increases in sensitivities to groundwater usage during significant drought periods.

  5. HydroDesktop: An Open Source GIS-Based Platform for Hydrologic Data Discovery, Visualization, and Analysis

    Science.gov (United States)

    Ames, D. P.; Kadlec, J.; Cao, Y.; Grover, D.; Horsburgh, J. S.; Whiteaker, T.; Goodall, J. L.; Valentine, D. W.

    2010-12-01

    A growing number of hydrologic information servers are being deployed by government agencies, university networks, and individual researchers using the Consortium of Universities for the Advancement of Hydrologic Science, Inc. (CUAHSI) Hydrologic Information System (HIS). The CUAHSI HIS Project has developed a standard software stack, called HydroServer, for publishing hydrologic observations data. It includes the Observations Data Model (ODM) database and Water Data Service web services, which together enable publication of data on the Internet in a standard format called Water Markup Language (WaterML). Metadata describing available datasets hosted on these servers is compiled within a central metadata catalog called HIS Central at the San Diego Supercomputer Center and is searchable through a set of predefined web services based queries. Together, these servers and central catalog service comprise a federated HIS of a scale and comprehensiveness never previously available. This presentation will briefly review/introduce the CUAHSI HIS system with special focus on a new HIS software tool called "HydroDesktop" and the open source software development web portal, www.HydroDesktop.org, which supports community development and maintenance of the software. HydroDesktop is a client-side, desktop software application that acts as a search and discovery tool for exploring the distributed network of HydroServers, downloading specific data series, visualizing and summarizing data series and exporting these to formats needed for analysis by external software. HydroDesktop is based on the open source DotSpatial GIS developer toolkit which provides it with map-based data interaction and visualization, and a plug-in interface that can be used by third party developers and researchers to easily extend the software using Microsoft .NET programming languages. HydroDesktop plug-ins that are presently available or currently under development within the project and by third party

  6. Hydrological Classification, a Practical Tool for Mangrove Restoration.

    Science.gov (United States)

    Van Loon, Anne F; Te Brake, Bram; Van Huijgevoort, Marjolein H J; Dijksma, Roel

    2016-01-01

    Mangrove restoration projects, aimed at restoring important values of mangrove forests after degradation, often fail because hydrological conditions are disregarded. We present a simple, but robust methodology to determine hydrological suitability for mangrove species, which can guide restoration practice. In 15 natural and 8 disturbed sites (i.e. disused shrimp ponds) in three case study regions in south-east Asia, water levels were measured and vegetation species composition was determined. Using an existing hydrological classification for mangroves, sites were classified into hydrological classes, based on duration of inundation, and vegetation classes, based on occurrence of mangrove species. For the natural sites hydrological and vegetation classes were similar, showing clear distribution of mangrove species from wet to dry sites. Application of the classification to disturbed sites showed that in some locations hydrological conditions had been restored enough for mangrove vegetation to establish, in some locations hydrological conditions were suitable for various mangrove species but vegetation had not established naturally, and in some locations hydrological conditions were too wet for any mangrove species (natural or planted) to grow. We quantified the effect that removal of obstructions such as dams would have on the hydrology and found that failure of planting at one site could have been prevented. The hydrological classification needs relatively little data, i.e. water levels for a period of only one lunar tidal cycle without additional measurements, and uncertainties in the measurements and analysis are relatively small. For the study locations, the application of the hydrological classification gave important information about how to restore the hydrology to suitable conditions to improve natural regeneration or to plant mangrove species, which could not have been obtained by estimating elevation only. Based on this research a number of recommendations

  7. Hydrological Classification, a Practical Tool for Mangrove Restoration.

    Directory of Open Access Journals (Sweden)

    Anne F Van Loon

    Full Text Available Mangrove restoration projects, aimed at restoring important values of mangrove forests after degradation, often fail because hydrological conditions are disregarded. We present a simple, but robust methodology to determine hydrological suitability for mangrove species, which can guide restoration practice. In 15 natural and 8 disturbed sites (i.e. disused shrimp ponds in three case study regions in south-east Asia, water levels were measured and vegetation species composition was determined. Using an existing hydrological classification for mangroves, sites were classified into hydrological classes, based on duration of inundation, and vegetation classes, based on occurrence of mangrove species. For the natural sites hydrological and vegetation classes were similar, showing clear distribution of mangrove species from wet to dry sites. Application of the classification to disturbed sites showed that in some locations hydrological conditions had been restored enough for mangrove vegetation to establish, in some locations hydrological conditions were suitable for various mangrove species but vegetation had not established naturally, and in some locations hydrological conditions were too wet for any mangrove species (natural or planted to grow. We quantified the effect that removal of obstructions such as dams would have on the hydrology and found that failure of planting at one site could have been prevented. The hydrological classification needs relatively little data, i.e. water levels for a period of only one lunar tidal cycle without additional measurements, and uncertainties in the measurements and analysis are relatively small. For the study locations, the application of the hydrological classification gave important information about how to restore the hydrology to suitable conditions to improve natural regeneration or to plant mangrove species, which could not have been obtained by estimating elevation only. Based on this research a number

  8. A Sensor Web and Web Service-Based Approach for Active Hydrological Disaster Monitoring

    Directory of Open Access Journals (Sweden)

    Xi Zhai

    2016-09-01

    Full Text Available Rapid advancements in Earth-observing sensor systems have led to the generation of large amounts of remote sensing data that can be used for the dynamic monitoring and analysis of hydrological disasters. The management and analysis of these data could take advantage of distributed information infrastructure technologies such as Web service and Sensor Web technologies, which have shown great potential in facilitating the use of observed big data in an interoperable, flexible and on-demand way. However, it remains a challenge to achieve timely response to hydrological disaster events and to automate the geoprocessing of hydrological disaster observations. This article proposes a Sensor Web and Web service-based approach to support active hydrological disaster monitoring. This approach integrates an event-driven mechanism, Web services, and a Sensor Web and coordinates them using workflow technologies to facilitate the Web-based sharing and processing of hydrological hazard information. The design and implementation of hydrological Web services for conducting various hydrological analysis tasks on the Web using dynamically updating sensor observation data are presented. An application example is provided to demonstrate the benefits of the proposed approach over the traditional approach. The results confirm the effectiveness and practicality of the proposed approach in cases of hydrological disaster.

  9. Climate change impacts analysis on hydrological processes in the Weyib River basin in Ethiopia

    Science.gov (United States)

    Serur, Abdulkerim Bedewi; Sarma, Arup Kumar

    2017-12-01

    The study aims to examine the variation of hydrological processes (in terms of mean annual, seasonal, and monthly) under changing climate within the Weyib River basin in Ethiopia at both basin and sub-basin level using ArcSWAT hydrologic model. The climate change impacts on temperature and precipitation characteristics within the basin have been studied using GFDL-ESM2M, CanESM2, and GFDL-ESM2G models for RCP8.5, RCP4.5, and RCP2.6 scenarios from coupled model inter-comparison project 5 (CMIP5) which have been downscaled by SDSM. The results revealed that the mean annual temperature and precipitation reveal a statistically significant (at 5% significant level) increasing trend in the nine ESM-RCP scenarios for all the future time slices. The mean annual actual evapotranspiration, baseflow, soil water content, percolation, and water availability in the stream exhibit a rise for all the ESMs-RCP scenarios in the entire basin and in all the sub-basins. However, surface runoff and potential evapotranspiration show a decreasing trend. The mean annual water availability increases between 9.18 and 27.97% (RCP8.5), 3.98 and 19.61% (RCP4.5), and 11.82 and 17.06% (RCP2.6) in the entire basin. The sub-basin level analysis reveals that the annual, seasonal, and monthly variations of hydrological processes in all the sub-basins are similar regarding direction but different in magnitude as compared to that of the entire basin analysis. In addition, it is observed that there is a larger monthly and seasonal variation in hydrological processes as compared to the variation in annual scale. The net water availability tends to decline in the dry season; this might cause water shortage in the lowland region and greater increases in an intermediate and rainy seasons; this might cause flooding to some flood prone region of the basin. Since the variation of water availability among the sub-basins in upcoming period is high, there is a scope of meeting agriculture water demand through

  10. Is there a need for hydrological modelling in decision support systems for nuclear emergencies

    International Nuclear Information System (INIS)

    Raskob, W.; Heling, R.; Zheleznyak, M.

    2003-01-01

    Full text: Potential releases from nuclear installations may contaminate both the terrestrial and the aquatic environment. Significant dose contributions via the aquatic pathways were shown for releases from Oak Ridge Laboratory (on the Clinch River-Tennessee River basin), for releases from the 'Mayak' plant (on the Techa River - Ob River system) and finally for releases from Chernobyl (on the Dnieper River basin and on the Scandinavian lake system via atmospheric fallout). Of highest concern was the contamination of drinking water, as the public is very sensitive to the quality of this essential nutrient. Consumption of aquatic food products and contamination of terrestrial crops via irrigation are potential exposure pathways which have to be considered in addition in case of a contamination of the aquatic environment. National hydrological services were, among others, responsible for the surveillance of the national water ways. This includes also monitoring of radioactive substances on a routine basis. Besides taking measurements at various locations, models might be available to predict the water discharge and to some extend also the concentration of pollutants in some of the most important river systems. Therefore, one can argue that these services, as they are part of the emergency management team in case of a nuclear emergency, should be able to support decision making to the extend necessary. However, the advice from the hydrological services might be limited to the analysis of the present situation including only limited prediction capabilities mainly focusing on the behaviour of radionuclides in the main river systems in relation to the preduction of drinking water. Contrary to this, a complete hydrological model chain has been established in the RODOS system, covering all relevant processes from the runoff from contaminated areas, transport in river systems and reservoirs, behaviour of radionuclides in lakes and finally the modelling of coastal areas. To

  11. A Hydrological Response Analysis Considering Climatic Variability: Case Study of Hunza Catchment

    Directory of Open Access Journals (Sweden)

    A. N. Laghari

    2018-06-01

    Full Text Available The hydrological response of mountainous catchments particularly dependent on melting runoff is very vulnerable to climatic variability. This study is an attempt to assess hydrological response towards climatic variability of the Hunza catchment located in the mountainous chain of greater Hindu Kush-Himalaya (HKH region. The hydrological response is analyzed through changes in snowmelt, ice melt and total runoff simulated through the application of the hydrological modeling system PREVAH under hypothetically developed climate change scenarios. The developed scenarios are based on changes in precipitation (Prp and temperature (Tmp and their combination. Under all the warmer scenarios, the increase in temperature systematically decreases the mean annual snow melt and increases significantly glacier melt volume. Temperature changes from 1°C to 4°C produce a large increase in spring and summer runoff, while no major variation was observed in the winter and autumn runoff. The maximum seasonal changes recorded under the Tmp+4°C, Prp+10% scenario.

  12. Mathematical modelling of fracture hydrology

    International Nuclear Information System (INIS)

    Herbert, A.W.; Hodgkinson, D.P.; Lever, D.A.; Robinson, P.C.; Rae, J.

    1985-06-01

    This report summarises the work performed between January 1983 and December 1984 for the CEC/DOE contract 'Mathematical Modelling of Fracture Hydrology', under the following headings: 1) Statistical fracture network modelling, 2) Continuum models of flow and transport, 3) Simplified models, 4) Analysis of laboratory experiments and 5) Analysis of field experiments. (author)

  13. Hydrological character of the soil of a degraded area: comparison of analysis physical, chemical and floristic vegetational

    Science.gov (United States)

    Manfredi, Paolo; Cassinari, Chiara; Giupponi, Luca; Sichel, Giorgio Maria; Trevisan, Marco

    2013-04-01

    This work is an integral part of a project co-financed by the European Union "Environmental recovery of degraded soils and desertified land by a new technology treatment for the recovery of the land" (Life 10 ENV IT 400 "New Life"); this technology is based on a treatment (patented by m.c.m. Ecosistemi) of chemical mechanical processing of degraded soils with an initial process of disgregation of the same followed by their reconstitution incorporating soil matrices, a subsequent polycondensation with humic acids and a final restoration. The area of intervention of the New Life project lies in the municipal territory of Piacenza, where between the years 70 and 80 has been made a landfill for municipal solid waste with subsequent restoration work by placing a layer of soil cover. The first phase of the New Life project was that of a physical and chemical characterization of different cover soils of the area combined with floristic-vegetational analysis. At this stage the present study aims to compare the data related to the analysis of the vegetation with those returned by investigation of hydrological characteristics of soils performed by laboratory methods, together to confront two theoretical calculation methods for determination of hydrological parameters. The comparison of the ecological study of the vegetation with the outcomes obtained by the classical methods regarding the determination of water retention, allows you to have a picture that is as detailed as possible in describing the characteristics of the substrate. The comparison also with the two methods of calculation, which determines the hydrological character conditions in average soil condition, allows you to ascertain the actual disturbance of the soil in the area. In order to delineate the hydrological characteristics of the soils sampled, were quantified by the Maximum Water Concentration, the capacity range, the point of Withering by the method of the Tensiometric box and the Pressure Membrane

  14. Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer

    International Nuclear Information System (INIS)

    Thomassen, Mads; Tan, Qihua; Kruse, Torben A

    2008-01-01

    Metastasis is believed to progress in several steps including different pathways but the determination and understanding of these mechanisms is still fragmentary. Microarray analysis of gene expression patterns in breast tumors has been used to predict outcome in recent studies. Besides classification of outcome, these global expression patterns may reflect biological mechanisms involved in metastasis of breast cancer. Our purpose has been to investigate pathways and transcription factors involved in metastasis by use of gene expression data sets. We have analyzed 8 publicly available gene expression data sets. A global approach, 'gene set enrichment analysis' as well as an approach focusing on a subset of significantly differently regulated genes, GenMAPP, has been applied to rank pathway gene sets according to differential regulation in metastasizing tumors compared to non-metastasizing tumors. Meta-analysis has been used to determine overrepresentation of pathways and transcription factors targets, concordant deregulated in metastasizing breast tumors, in several data sets. The major findings are up-regulation of cell cycle pathways and a metabolic shift towards glucose metabolism reflected in several pathways in metastasizing tumors. Growth factor pathways seem to play dual roles; EGF and PDGF pathways are decreased, while VEGF and sex-hormone pathways are increased in tumors that metastasize. Furthermore, migration, proteasome, immune system, angiogenesis, DNA repair and several signal transduction pathways are associated to metastasis. Finally several transcription factors e.g. E2F, NFY, and YY1 are identified as being involved in metastasis. By pathway meta-analysis many biological mechanisms beyond major characteristics such as proliferation are identified. Transcription factor analysis identifies a number of key factors that support central pathways. Several previously proposed treatment targets are identified and several new pathways that may

  15. Ecological assessment of fish biodiversity in relation to hydrological ...

    African Journals Online (AJOL)

    This research analysed the fish species diversity; ecological distribution and abundance in relation to hydrological variables of Ogun coastal water. Fish species were collected with the use of graded gillnet bimonthly for six-months. Correlation analysis between fish species richness with the hydrological attributes showed ...

  16. Applicability of Hydrologic Landscapes for Model Calibration ...

    Science.gov (United States)

    The Pacific Northwest Hydrologic Landscapes (PNW HL) at the assessment unit scale has provided a solid conceptual classification framework to relate and transfer hydrologically meaningful information between watersheds without access to streamflow time series. A collection of techniques were applied to the HL assessment unit composition in watersheds across the Pacific Northwest to aggregate the hydrologic behavior of the Hydrologic Landscapes from the assessment unit scale to the watershed scale. This non-trivial solution both emphasizes HL classifications within the watershed that provide that majority of moisture surplus/deficit and considers the relative position (upstream vs. downstream) of these HL classifications. A clustering algorithm was applied to the HL-based characterization of assessment units within 185 watersheds to help organize watersheds into nine classes hypothesized to have similar hydrologic behavior. The HL-based classes were used to organize and describe hydrologic behavior information about watershed classes and both predictions and validations were independently performed with regard to the general magnitude of six hydroclimatic signature values. A second cluster analysis was then performed using the independently calculated signature values as similarity metrics, and it was found that the six signature clusters showed substantial overlap in watershed class membership to those in the HL-based classes. One hypothesis set forward from thi

  17. GenMAPP 2: new features and resources for pathway analysis

    Directory of Open Access Journals (Sweden)

    Dahlquist Kam D

    2007-06-01

    Full Text Available Abstract Background Microarray technologies have evolved rapidly, enabling biologists to quantify genome-wide levels of gene expression, alternative splicing, and sequence variations for a variety of species. Analyzing and displaying these data present a significant challenge. Pathway-based approaches for analyzing microarray data have proven useful for presenting data and for generating testable hypotheses. Results To address the growing needs of the microarray community we have released version 2 of Gene Map Annotator and Pathway Profiler (GenMAPP, a new GenMAPP database schema, and integrated resources for pathway analysis. We have redesigned the GenMAPP database to support multiple gene annotations and species as well as custom species database creation for a potentially unlimited number of species. We have expanded our pathway resources by utilizing homology information to translate pathway content between species and extending existing pathways with data derived from conserved protein interactions and coexpression. We have implemented a new mode of data visualization to support analysis of complex data, including time-course, single nucleotide polymorphism (SNP, and splicing. GenMAPP version 2 also offers innovative ways to display and share data by incorporating HTML export of analyses for entire sets of pathways as organized web pages. Conclusion GenMAPP version 2 provides a means to rapidly interrogate complex experimental data for pathway-level changes in a diverse range of organisms.

  18. A micro-hydrology computation ordering algorithm

    International Nuclear Information System (INIS)

    Croley, T.E. II

    1980-01-01

    Discrete-distributed-parameter models are essential for watershed modelling where practical consideration of spatial variations in watershed properties and inputs is desired. Such modelling is necessary for analysis of detailed hydrologic impacts from management strategies and land-use effects. Trade-offs between model validity and model complexity exist in resolution of the watershed. Once these are determined, the watershed is then broken into sub-areas which each have essentially spatially-uniform properties. Lumped-parameter (micro-hydrology) models are applied to these sub-areas and their outputs are combined through the use of a computation ordering technique, as illustrated by many discrete-distributed-parameter hydrology models. Manual ordering of these computations requires fore-thought, and is tedious, error prone, sometimes storage intensive and least adaptable to changes in watershed resolution. A programmable algorithm for ordering micro-hydrology computations is presented that enables automatic ordering of computations within the computer via an easily understood and easily implemented node definition, numbering and coding scheme. This scheme and the algorithm are detailed in logic flow-charts and an example application is presented. Extensions and modifications of the algorithm are easily made for complex geometries or differing micro-hydrology models. The algorithm is shown to be superior to manual ordering techniques and has potential use in high-resolution studies. (orig.)

  19. Hydrologic Futures: Using Scenario Analysis to Evaluate Impacts of Forecasted Land Use Change on Hydrologic Services

    Science.gov (United States)

    Land cover and land use changes can substantially alter hydrologic ecosystem services. Water availability and quality can change with modifications to the type or amount of surface vegetation, the permeability of soil and other surfaces, and the introduction of contaminants throu...

  20. Uncertainty, sensitivity analysis and the role of data based mechanistic modeling in hydrology

    Science.gov (United States)

    Ratto, M.; Young, P. C.; Romanowicz, R.; Pappenberger, F.; Saltelli, A.; Pagano, A.

    2007-05-01

    In this paper, we discuss a joint approach to calibration and uncertainty estimation for hydrologic systems that combines a top-down, data-based mechanistic (DBM) modelling methodology; and a bottom-up, reductionist modelling methodology. The combined approach is applied to the modelling of the River Hodder catchment in North-West England. The top-down DBM model provides a well identified, statistically sound yet physically meaningful description of the rainfall-flow data, revealing important characteristics of the catchment-scale response, such as the nature of the effective rainfall nonlinearity and the partitioning of the effective rainfall into different flow pathways. These characteristics are defined inductively from the data without prior assumptions about the model structure, other than it is within the generic class of nonlinear differential-delay equations. The bottom-up modelling is developed using the TOPMODEL, whose structure is assumed a priori and is evaluated by global sensitivity analysis (GSA) in order to specify the most sensitive and important parameters. The subsequent exercises in calibration and validation, performed with Generalized Likelihood Uncertainty Estimation (GLUE), are carried out in the light of the GSA and DBM analyses. This allows for the pre-calibration of the the priors used for GLUE, in order to eliminate dynamical features of the TOPMODEL that have little effect on the model output and would be rejected at the structure identification phase of the DBM modelling analysis. In this way, the elements of meaningful subjectivity in the GLUE approach, which allow the modeler to interact in the modelling process by constraining the model to have a specific form prior to calibration, are combined with other more objective, data-based benchmarks for the final uncertainty estimation. GSA plays a major role in building a bridge between the hypothetico-deductive (bottom-up) and inductive (top-down) approaches and helps to improve the

  1. Modeling urbanized watershed flood response changes with distributed hydrological model: key hydrological processes, parameterization and case studies

    Science.gov (United States)

    Chen, Y.

    2017-12-01

    Urbanization is the world development trend for the past century, and the developing countries have been experiencing much rapider urbanization in the past decades. Urbanization brings many benefits to human beings, but also causes negative impacts, such as increasing flood risk. Impact of urbanization on flood response has long been observed, but quantitatively studying this effect still faces great challenges. For example, setting up an appropriate hydrological model representing the changed flood responses and determining accurate model parameters are very difficult in the urbanized or urbanizing watershed. In the Pearl River Delta area, rapidest urbanization has been observed in China for the past decades, and dozens of highly urbanized watersheds have been appeared. In this study, a physically based distributed watershed hydrological model, the Liuxihe model is employed and revised to simulate the hydrological processes of the highly urbanized watershed flood in the Pearl River Delta area. A virtual soil type is then defined in the terrain properties dataset, and its runoff production and routing algorithms are added to the Liuxihe model. Based on a parameter sensitive analysis, the key hydrological processes of a highly urbanized watershed is proposed, that provides insight into the hydrological processes and for parameter optimization. Based on the above analysis, the model is set up in the Songmushan watershed where there is hydrological data observation. A model parameter optimization and updating strategy is proposed based on the remotely sensed LUC types, which optimizes model parameters with PSO algorithm and updates them based on the changed LUC types. The model parameters in Songmushan watershed are regionalized at the Pearl River Delta area watersheds based on the LUC types of the other watersheds. A dozen watersheds in the highly urbanized area of Dongguan City in the Pearl River Delta area were studied for the flood response changes due to

  2. Bridging arctic pathways: Integrating hydrology, geomorphology and remote sensing in the north

    Science.gov (United States)

    Trochim, Erin D.

    This work presents improved approaches for integrating patterns and processes within hydrology, geomorphology, ecology and permafrost on Arctic landscapes. Emphasis was placed on addressing fundamental interdisciplinary questions using robust, repeatable methods. Water tracks were examined in the foothills of the Brooks Range to ascertain their role within the range of features that transport water in Arctic regions. Classes of water tracks were developed using multiple factor analysis based on their geomorphic, soil and vegetation characteristics. These classes were validated to verify that they were repeatable. Water tracks represented a broad spectrum of patterns and processes primarily driven by surficial geology. This research demonstrated a new approach to better understanding regional hydrological patterns. The locations of the water track classes were mapped using a combination method where intermediate processing of spectral classifications, texture and topography were fed into random forests to identify the water track classes. Overall, the water track classes were best visualized where they were the most discrete from the background landscape in terms of both shape and content. Issues with overlapping and imbalances between water track classes were the biggest challenges. Resolving the spatial locations of different water tracks represents a significant step forward for understanding periglacial landscape dynamics. Leaf area index (LAI) calculations using the gap-method were optimized using normalized difference vegetation index (NDVI) as input for both WorldView-2 and Landsat-7 imagery. The study design used groups to separate the effects of surficial drainage networks and the relative magnitude of change in NDVI over time. LAI values were higher for the WorldView-2 data and for each sensor and group combination the distribution of LAI values was unique. This study indicated that there are tradeoffs between increased spatial resolution and the ability

  3. Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy.

    Directory of Open Access Journals (Sweden)

    Michael Volpers

    Full Text Available The strong advances in synthetic biology enable the engineering of novel functions and complex biological features in unprecedented ways, such as implementing synthetic autotrophic metabolism into heterotrophic hosts. A key challenge for the sustainable production of fuels and chemicals entails the engineering of synthetic autotrophic organisms that can effectively and efficiently fix carbon dioxide by using sustainable energy sources. This challenge involves the integration of carbon fixation and energy uptake systems. A variety of carbon fixation pathways and several types of photosystems and other energy uptake systems can be chosen and, potentially, modularly combined to design synthetic autotrophic metabolism. Prior to implementation, these designs can be evaluated by the combination of several computational pathway analysis techniques. Here we present a systematic, integrated in silico analysis of photo-electro-autotrophic pathway designs, consisting of natural and synthetic carbon fixation pathways, a proton-pumping rhodopsin photosystem for ATP regeneration and an electron uptake pathway. We integrated Flux Balance Analysis of the heterotrophic chassis Escherichia coli with kinetic pathway analysis and thermodynamic pathway analysis (Max-min Driving Force. The photo-electro-autotrophic designs are predicted to have a limited potential for anaerobic, autotrophic growth of E. coli, given the relatively low ATP regenerating capacity of the proton pumping rhodopsin photosystems and the high ATP maintenance of E. coli. If these factors can be tackled, our analysis indicates the highest growth potential for the natural reductive tricarboxylic acid cycle and the synthetic pyruvate synthase-pyruvate carboxylate -glyoxylate bicycle. Both carbon fixation cycles are very ATP efficient, while maintaining fast kinetics, which also results in relatively low estimated protein costs for these pathways. Furthermore, the synthetic bicycles are highly

  4. Green roof impact on the hydrological cycle components

    Science.gov (United States)

    Lamera, Carlotta; Rulli, Maria Cristina; Becciu, Gianfranco; Rosso, Renzo

    2013-04-01

    In the last decades the importance of storm water management in urban areas has increased considerably, due to both urbanization extension and to a greater concern for environment pollution. Traditional storm water control practices, based on the "all to the sewer" attitude, rely on conveyance to route storm water runoff from urban impervious surfaces towards the nearby natural water bodies. In recent years, infiltration facilities are receiving an increasing attention, due to their particular efficiency in restoring a balance in hydrological cycle quite equal to quite pre-urbanization condition. In particular, such techniques are designed to capture, temporarily retain and infiltrate storm water, promote evapotranspiration and harvest water at the source, encouraging in general evaporation, evapotranspiration, groundwater recharge and the re-use of storm water. Green roofs are emerging as an increasingly popular Sustainable Urban Drainage Systems (SUDS) technique for urban storm water management. Indeed, they are able to operate hydrologic control over storm water runoff: they allow a significant reduction of peak flows and runoff volumes collected by drainage system, with a consequent reduction of flooding events and pollution masses discharges by CSO. Furthermore green roofs have a positive influence on the microclimate in urban areas by helping in lower urban air temperatures and mitigate the heat island effect. Last but not least, they have the advantage of improving the thermal insulation of buildings, with significant energy savings. A detailed analysis of the hydrological dynamics, connected both with the characteristics of the climatic context and with the green roof technical design, is essential in order to obtain a full characterization of the hydrologic behavior of a green roof system and its effects on the urban water cycle components. The purpose of this paper is to analysis the hydrological effects and urban benefits of the vegetation cover of a

  5. HESS Opinions: A conceptual framework for assessing socio-hydrological resilience under change

    Science.gov (United States)

    Mao, Feng; Clark, Julian; Karpouzoglou, Timothy; Dewulf, Art; Buytaert, Wouter; Hannah, David

    2017-07-01

    Despite growing interest in resilience, there is still significant scope for increasing its conceptual clarity and practical relevance in socio-hydrological contexts: specifically, questions of how socio-hydrological systems respond to and cope with perturbations and how these connect to resilience remain unanswered. In this opinion paper, we propose a novel conceptual framework for understanding and assessing resilience in coupled socio-hydrological contexts, and encourage debate on the inter-connections between socio-hydrology and resilience. Taking a systems perspective, we argue that resilience is a set of systematic properties with three dimensions: absorptive, adaptive, and transformative, and contend that socio-hydrological systems can be viewed as various forms of human-water couplings, reflecting different aspects of these interactions. We propose a framework consisting of two parts. The first part addresses the identity of socio-hydrological resilience, answering questions such as resilience of what in relation to what. We identify three existing framings of resilience for different types of human-water systems and subsystems, which have been used in different fields: (1) the water subsystem, highlighting hydrological resilience to anthropogenic hazards; (2) the human subsystem, foregrounding social resilience to hydrological hazards; and (3) the coupled human-water system, exhibiting socio-hydrological resilience. We argue that these three system types and resiliences afford new insights into the clarification and evaluation of different water management challenges. The first two types address hydrological and social states, while the third type emphasises the feedbacks and interactions between human and water components within complex systems subject to internal or external disturbances. In the second part, we focus on resilience management and develop the notion of the resilience canvas, a novel heuristic device to identify possible pathways and to

  6. Mining pathway associations for disease-related pathway activity analysis based on gene expression and methylation data.

    Science.gov (United States)

    Lee, Hyeonjeong; Shin, Miyoung

    2017-01-01

    The problem of discovering genetic markers as disease signatures is of great significance for the successful diagnosis, treatment, and prognosis of complex diseases. Even if many earlier studies worked on identifying disease markers from a variety of biological resources, they mostly focused on the markers of genes or gene-sets (i.e., pathways). However, these markers may not be enough to explain biological interactions between genetic variables that are related to diseases. Thus, in this study, our aim is to investigate distinctive associations among active pathways (i.e., pathway-sets) shown each in case and control samples which can be observed from gene expression and/or methylation data. The pathway-sets are obtained by identifying a set of associated pathways that are often active together over a significant number of class samples. For this purpose, gene expression or methylation profiles are first analyzed to identify significant (active) pathways via gene-set enrichment analysis. Then, regarding these active pathways, an association rule mining approach is applied to examine interesting pathway-sets in each class of samples (case or control). By doing so, the sets of associated pathways often working together in activity profiles are finally chosen as our distinctive signature of each class. The identified pathway-sets are aggregated into a pathway activity network (PAN), which facilitates the visualization of differential pathway associations between case and control samples. From our experiments with two publicly available datasets, we could find interesting PAN structures as the distinctive signatures of breast cancer and uterine leiomyoma cancer, respectively. Our pathway-set markers were shown to be superior or very comparable to other genetic markers (such as genes or gene-sets) in disease classification. Furthermore, the PAN structure, which can be constructed from the identified markers of pathway-sets, could provide deeper insights into

  7. Modelling and Analysis of Biochemical Signalling Pathway Cross-talk

    Directory of Open Access Journals (Sweden)

    Robin Donaldson

    2010-02-01

    Full Text Available Signalling pathways are abstractions that help life scientists structure the coordination of cellular activity. Cross-talk between pathways accounts for many of the complex behaviours exhibited by signalling pathways and is often critical in producing the correct signal-response relationship. Formal models of signalling pathways and cross-talk in particular can aid understanding and drive experimentation. We define an approach to modelling based on the concept that a pathway is the (synchronising parallel composition of instances of generic modules (with internal and external labels. Pathways are then composed by (synchronising parallel composition and renaming; different types of cross-talk result from different combinations of synchronisation and renaming. We define a number of generic modules in PRISM and five types of cross-talk: signal flow, substrate availability, receptor function, gene expression and intracellular communication. We show that Continuous Stochastic Logic properties can both detect and distinguish the types of cross-talk. The approach is illustrated with small examples and an analysis of the cross-talk between the TGF-b/BMP, WNT and MAPK pathways.

  8. Effects of clinical pathways in the joint replacement: a meta-analysis

    Directory of Open Access Journals (Sweden)

    Faggiano F

    2009-07-01

    Full Text Available Abstract Background A meta-analysis was performed to evaluate the use of clinical pathways for hip and knee joint replacements when compared with standard medical care. The impact of clinical pathways was evaluated assessing the major outcomes of in-hospital hip and knee joint replacement processes: postoperative complications, number of patients discharged at home, length of in-hospital stay and direct costs. Methods Medline, Cinahl, Embase and the Cochrane Central Register of Controlled Trials were searched. The search was performed from 1975 to 2007. Each study was assessed independently by two reviewers. The assessment of methodological quality of the included studies was based on the Jadad methodological approach and on the New Castle Ottawa Scale. Data analysis abided by the guidelines set out by The Cochrane Collaboration regarding statistical methods. Meta-analyses were performed using RevMan software, version 4.2. Results Twenty-two studies met the study inclusion criteria and were included in the meta-analysis for a total sample of 6,316 patients. The aggregate overall results showed significantly fewer patients suffering postoperative complications in the clinical pathways group when compared with the standard care group. A shorter length of stay in the clinical pathway group was also observed and lower costs during hospital stay were associated with the use of the clinical pathways. No significant differences were found in the rates of discharge to home. Conclusion The results of this meta-analysis show that clinical pathways can significantly improve the quality of care even if it is not possible to conclude that the implementation of clinical pathways is a cost-effective process, because none of the included studies analysed the cost of the development and implementation of the pathways. Based on the results we assume that pathways have impact on the organisation of care if the care process is structured in a standardised way

  9. A novel bi-level meta-analysis approach: applied to biological pathway analysis.

    Science.gov (United States)

    Nguyen, Tin; Tagett, Rebecca; Donato, Michele; Mitrea, Cristina; Draghici, Sorin

    2016-02-01

    The accumulation of high-throughput data in public repositories creates a pressing need for integrative analysis of multiple datasets from independent experiments. However, study heterogeneity, study bias, outliers and the lack of power of available methods present real challenge in integrating genomic data. One practical drawback of many P-value-based meta-analysis methods, including Fisher's, Stouffer's, minP and maxP, is that they are sensitive to outliers. Another drawback is that, because they perform just one statistical test for each individual experiment, they may not fully exploit the potentially large number of samples within each study. We propose a novel bi-level meta-analysis approach that employs the additive method and the Central Limit Theorem within each individual experiment and also across multiple experiments. We prove that the bi-level framework is robust against bias, less sensitive to outliers than other methods, and more sensitive to small changes in signal. For comparative analysis, we demonstrate that the intra-experiment analysis has more power than the equivalent statistical test performed on a single large experiment. For pathway analysis, we compare the proposed framework versus classical meta-analysis approaches (Fisher's, Stouffer's and the additive method) as well as against a dedicated pathway meta-analysis package (MetaPath), using 1252 samples from 21 datasets related to three human diseases, acute myeloid leukemia (9 datasets), type II diabetes (5 datasets) and Alzheimer's disease (7 datasets). Our framework outperforms its competitors to correctly identify pathways relevant to the phenotypes. The framework is sufficiently general to be applied to any type of statistical meta-analysis. The R scripts are available on demand from the authors. sorin@wayne.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e

  10. Distributed Evaluation of Local Sensitivity Analysis (DELSA), with application to hydrologic models

    Science.gov (United States)

    Rakovec, O.; Hill, M. C.; Clark, M. P.; Weerts, A. H.; Teuling, A. J.; Uijlenhoet, R.

    2014-01-01

    This paper presents a hybrid local-global sensitivity analysis method termed the Distributed Evaluation of Local Sensitivity Analysis (DELSA), which is used here to identify important and unimportant parameters and evaluate how model parameter importance changes as parameter values change. DELSA uses derivative-based "local" methods to obtain the distribution of parameter sensitivity across the parameter space, which promotes consideration of sensitivity analysis results in the context of simulated dynamics. This work presents DELSA, discusses how it relates to existing methods, and uses two hydrologic test cases to compare its performance with the popular global, variance-based Sobol' method. The first test case is a simple nonlinear reservoir model with two parameters. The second test case involves five alternative "bucket-style" hydrologic models with up to 14 parameters applied to a medium-sized catchment (200 km2) in the Belgian Ardennes. Results show that in both examples, Sobol' and DELSA identify similar important and unimportant parameters, with DELSA enabling more detailed insight at much lower computational cost. For example, in the real-world problem the time delay in runoff is the most important parameter in all models, but DELSA shows that for about 20% of parameter sets it is not important at all and alternative mechanisms and parameters dominate. Moreover, the time delay was identified as important in regions producing poor model fits, whereas other parameters were identified as more important in regions of the parameter space producing better model fits. The ability to understand how parameter importance varies through parameter space is critical to inform decisions about, for example, additional data collection and model development. The ability to perform such analyses with modest computational requirements provides exciting opportunities to evaluate complicated models as well as many alternative models.

  11. Bridging the Gap between NASA Hydrological Data and the Geospatial Community

    Science.gov (United States)

    Rui, Hualan; Teng, Bill; Vollmer, Bruce; Mocko, David M.; Beaudoing, Hiroko K.; Nigro, Joseph; Gary, Mark; Maidment, David; Hooper, Richard

    2011-01-01

    There is a vast and ever increasing amount of data on the Earth interconnected energy and hydrological systems, available from NASA remote sensing and modeling systems, and yet, one challenge persists: increasing the usefulness of these data for, and thus their use by, the geospatial communities. The Hydrology Data and Information Services Center (HDISC), part of the Goddard Earth Sciences DISC, has continually worked to better understand the hydrological data needs of the geospatial end users, to thus better able to bridge the gap between NASA data and the geospatial communities. This paper will cover some of the hydrological data sets available from HDISC, and the various tools and services developed for data searching, data subletting ; format conversion. online visualization and analysis; interoperable access; etc.; to facilitate the integration of NASA hydrological data by end users. The NASA Goddard data analysis and visualization system, Giovanni, is described. Two case examples of user-customized data services are given, involving the EPA BASINS (Better Assessment Science Integrating point & Non-point Sources) project and the CUAHSI Hydrologic Information System, with the common requirement of on-the-fly retrieval of long duration time series for a geographical point

  12. A comparative appraisal of hydrological behavior of SRTM DEM at catchment level

    Science.gov (United States)

    Sharma, Arabinda; Tiwari, K. N.

    2014-11-01

    The Shuttle Radar Topography Mission (SRTM) data has emerged as a global elevation data in the past one decade because of its free availability, homogeneity and consistent accuracy compared to other global elevation dataset. The present study explores the consistency in hydrological behavior of the SRTM digital elevation model (DEM) with reference to easily available regional 20 m contour interpolated DEM (TOPO DEM). Analysis ranging from simple vertical accuracy assessment to hydrological simulation of the studied Maithon catchment, using empirical USLE model and semidistributed, physical SWAT model, were carried out. Moreover, terrain analysis involving hydrological indices was performed for comparative assessment of the SRTM DEM with respect to TOPO DEM. Results reveal that the vertical accuracy of SRTM DEM (±27.58 m) in the region is less than the specified standard (±16 m). Statistical analysis of hydrological indices such as topographic wetness index (TWI), stream power index (SPI), slope length factor (SLF) and geometry number (GN) shows a significant differences in hydrological properties of the two studied DEMs. Estimation of soil erosion potentials of the catchment and conservation priorities of microwatersheds of the catchment using SRTM DEM and TOPO DEM produce considerably different results. Prediction of soil erosion potential using SRTM DEM is far higher than that obtained using TOPO DEM. Similarly, conservation priorities determined using the two DEMs are found to be agreed for only 34% of microwatersheds of the catchment. ArcSWAT simulation reveals that runoff predictions are less sensitive to selection of the two DEMs as compared to sediment yield prediction. The results obtained in the present study are vital to hydrological analysis as it helps understanding the hydrological behavior of the DEM without being influenced by the model structural as well as parameter uncertainty. It also reemphasized that SRTM DEM can be a valuable dataset for

  13. Genetic variants in two pathways influence serum urate levels and gout risk: a systematic pathway analysis.

    Science.gov (United States)

    Dong, Zheng; Zhou, Jingru; Xu, Xia; Jiang, Shuai; Li, Yuan; Zhao, Dongbao; Yang, Chengde; Ma, Yanyun; Wang, Yi; He, Hongjun; Ji, Hengdong; Zhang, Juan; Yuan, Ziyu; Yang, Yajun; Wang, Xiaofeng; Pang, Yafei; Jin, Li; Zou, Hejian; Wang, Jiucun

    2018-03-01

    The aims of this study were to identify candidate pathways associated with serum urate and to explore the genetic effect of those pathways on the risk of gout. Pathway analysis of the loci identified in genome-wide association studies (GWASs) showed that the ion transmembrane transporter activity pathway (GO: 0015075) and the secondary active transmembrane transporter activity pathway (GO: 0015291) were both associated with serum urate concentrations, with P FDR values of 0.004 and 0.007, respectively. In a Chinese population of 4,332 individuals, the two pathways were also found to be associated with serum urate (P FDR  = 1.88E-05 and 3.44E-04, separately). In addition, these two pathways were further associated with the pathogenesis of gout (P FDR  = 1.08E-08 and 2.66E-03, respectively) in the Chinese population and a novel gout-associated gene, SLC17A2, was identified (OR = 0.83, P FDR  = 0.017). The mRNA expression of candidate genes also showed significant differences among different groups at pathway level. The present study identified two transmembrane transporter activity pathways (GO: 0015075 and GO: 0015291) were associations with serum urate concentrations and the risk of gout. SLC17A2 was identified as a novel gene that influenced the risk of gout.

  14. Sensitivity analysis for the coupling of a subglacial hydrology model with a 3D ice-sheet model.

    Science.gov (United States)

    Bertagna, L.; Perego, M.; Gunzburger, M.; Hoffman, M. J.; Price, S. F.

    2017-12-01

    When studying the movement of ice sheets, one of the most important factors that influence the velocity of the ice is the amount of friction against the bedrock. Usually, this is modeled by a friction coefficient that may depend on the bed geometry and other quantities, such as the temperature and/or water pressure at the ice-bedrock interface. These quantities are often assumed to be known (either by indirect measurements or by means of parameter estimation) and constant in time. Here, we present a 3D computational model for the simulation of the ice dynamics which incorporates a 2D model proposed by Hewitt (2011) for the subglacial water pressure. The hydrology model is fully coupled with the Blatter-Pattyn model for the ice sheet flow, as the subglacial water pressure appears in the expression for the ice friction coefficient, and the ice velocity appears as a source term in the hydrology model. We will present results on real geometries, and perform a sensitivity analysis with respect to the hydrology model parameters.

  15. Landfilling: Hydrology

    DEFF Research Database (Denmark)

    Kjeldsen, Peter; Beaven, R.

    2011-01-01

    Landfill hydrology deals with the presence and movement of water through a landfill. The main objective in landfill hydrology is usually to predict leachate generation, but the presence and movement of water in a landfill also affect the degradation of the waste, the leaching of pollutants...... and the geotechnical stability of the fill. Understanding landfill hydrology is thus important for many aspects of landfill, in particular siting, design and operation. The objective of this chapter is to give a basic understanding of the hydrology of landfills, and to present ways to estimate leachate quantities...... under specific circumstances. Initially a general water balance equation is defined for a typical landfill, and the different parts of the water balance are discussed. A separate section discusses water flow and the hydrogeology of landfilled wastes and considers the impact of water short...

  16. Using SERC for creating and publishing student generated hydrology instruction materials

    Science.gov (United States)

    Merwade, V.; Rajib, A.; Ruddell, B.; Fox, S.

    2016-12-01

    Hydrology instruction typically involves teaching of the hydrologic cycle and the processes associated with it such as precipitation, evapotranspiration, infiltration, runoff generation and hydrograph analysis. With the availability of observed and remotely sensed data in public domain, there is an opportunity to incorporate place-based learning in hydrology classrooms. However, it is not always easy and possible for an instructor to complement an existing hydrology course with new material that requires both time and technical expertise, which the instructor may not have. The work presented here describes an effort where students created the data and modeling driven instruction materials as part of their class assignment for a hydrology course at Purdue University. Students in the class were divided into groups, and each group was assigned a topic such as precipitation, evapotranspiration, streamflow, flow duration curve and flood frequency analysis. Each of the student groups was then instructed to produce an instruction material showing ways to extract/process relevant data and perform some analysis for an area with specific land use characteristic. The student contributions were then organized into learning units such that someone can do a flow duration curve analysis or flood frequency analysis and see how it changes for rural area versus urban area. Science Education Resource Center (SERC) is used as a platform to publish and share these instruction materials so it can be used as-is or through modification by any instructor or student in relevant coursework anywhere in the world.

  17. Avenues for crowd science in Hydrology.

    Science.gov (United States)

    Koch, Julian; Stisen, Simon

    2016-04-01

    Crowd science describes research that is conducted with the participation of the general public (the crowd) and gives the opportunity to involve the crowd in research design, data collection and analysis. In various fields, scientists have already drawn on underused human resources to advance research at low cost, with high transparency and large acceptance of the public due to the bottom up structure and the participatory process. Within the hydrological sciences, crowd research has quite recently become more established in the form of crowd observatories to generate hydrological data on water quality, precipitation or river flow. These innovative observatories complement more traditional ways of monitoring hydrological data and strengthen a community-based environmental decision making. However, the full potential of crowd science lies in internet based participation of the crowd and it is not yet fully exploited in the field of Hydrology. New avenues that are not primarily based on the outsourcing of labor, but instead capitalize the full potential of human capabilities have to emerge. In multiple realms of solving complex problems, like image detection, optimization tasks, narrowing of possible solutions, humans still remain more effective than computer algorithms. The most successful online crowd science projects Foldit and Galaxy Zoo have proven that the collective of tens of thousands users could clearly outperform traditional computer based science approaches. Our study takes advantage of the well trained human perception to conduct a spatial sensitivity analysis of land-surface variables of a distributed hydrological model to identify the most sensitive spatial inputs. True spatial performance metrics, that quantitatively compare patterns, are not trivial to choose and their applicability is often not universal. On the other hand humans can quickly integrate spatial information at various scales and are therefore a trusted competence. We selected

  18. Hydrological response characteristics of Mediterranean catchments: a review

    OpenAIRE

    Merheb , M.; Moussa , R.; Abdallah , C.; Colin , F.; Perrin , C.; Baghdadi , N.

    2016-01-01

    International audience; This work examines 140 hydrological studies conducted in the Mediterranean region. It identifies key characteristics of the hydrological responses of Mediterranean catchments at various time scales and compares different methods and modelling approaches used for individualcatchmentstudies. The study area is divided into the northwestern (NWM), eastern (EM) and southern (SM) Mediterranean. The analysis indicates regional discrepancies in which the NWM shows the most ext...

  19. Wetland Hydrology

    Science.gov (United States)

    This chapter discusses the state of the science in wetland hydrology by touching upon the major hydraulic and hydrologic processes in these complex ecosystems, their measurement/estimation techniques, and modeling methods. It starts with the definition of wetlands, their benefit...

  20. Sensitivity analysis and parameter estimation for distributed hydrological modeling: potential of variational methods

    Directory of Open Access Journals (Sweden)

    W. Castaings

    2009-04-01

    Full Text Available Variational methods are widely used for the analysis and control of computationally intensive spatially distributed systems. In particular, the adjoint state method enables a very efficient calculation of the derivatives of an objective function (response function to be analysed or cost function to be optimised with respect to model inputs.

    In this contribution, it is shown that the potential of variational methods for distributed catchment scale hydrology should be considered. A distributed flash flood model, coupling kinematic wave overland flow and Green Ampt infiltration, is applied to a small catchment of the Thoré basin and used as a relatively simple (synthetic observations but didactic application case.

    It is shown that forward and adjoint sensitivity analysis provide a local but extensive insight on the relation between the assigned model parameters and the simulated hydrological response. Spatially distributed parameter sensitivities can be obtained for a very modest calculation effort (~6 times the computing time of a single model run and the singular value decomposition (SVD of the Jacobian matrix provides an interesting perspective for the analysis of the rainfall-runoff relation.

    For the estimation of model parameters, adjoint-based derivatives were found exceedingly efficient in driving a bound-constrained quasi-Newton algorithm. The reference parameter set is retrieved independently from the optimization initial condition when the very common dimension reduction strategy (i.e. scalar multipliers is adopted.

    Furthermore, the sensitivity analysis results suggest that most of the variability in this high-dimensional parameter space can be captured with a few orthogonal directions. A parametrization based on the SVD leading singular vectors was found very promising but should be combined with another regularization strategy in order to prevent overfitting.

  1. Statistical analysis of extreme values from insurance, finance, hydrology and other fields

    CERN Document Server

    Reiss, Rolf-Dieter

    1997-01-01

    The statistical analysis of extreme data is important for various disciplines, including hydrology, insurance, finance, engineering and environmental sciences. This book provides a self-contained introduction to the parametric modeling, exploratory analysis and statistical interference for extreme values. The entire text of this third edition has been thoroughly updated and rearranged to meet the new requirements. Additional sections and chapters, elaborated on more than 100 pages, are particularly concerned with topics like dependencies, the conditional analysis and the multivariate modeling of extreme data. Parts I–III about the basic extreme value methodology remain unchanged to some larger extent, yet notable are, e.g., the new sections about "An Overview of Reduced-Bias Estimation" (co-authored by M.I. Gomes), "The Spectral Decomposition Methodology", and "About Tail Independence" (co-authored by M. Frick), and the new chapter about "Extreme Value Statistics of Dependent Random Variables" (co-authored ...

  2. Flood Simulations and Uncertainty Analysis for the Pearl River Basin Using the Coupled Land Surface and Hydrological Model System

    Directory of Open Access Journals (Sweden)

    Yongnan Zhu

    2017-06-01

    Full Text Available The performances of hydrological simulations for the Pearl River Basin in China were analysed using the Coupled Land Surface and Hydrological Model System (CLHMS. Three datasets, including East Asia (EA, high-resolution gauge satellite-merged China Merged Precipitation Analysis (CMPA-Daily, and the Asian Precipitation Highly-Resolved Observational Data Integration Towards Evaluation (APHRODITE daily precipitation were used to drive the CLHMS model to simulate daily hydrological processes from 1998 to 2006. The results indicate that the precipitation data was the most important source of uncertainty in the hydrological simulation. The simulated streamflow driven by the CMPA-Daily agreed well with observations, with a Pearson correlation coefficient (PMC greater than 0.70 and an index of agreement (IOA similarity coefficient greater than 0.82 at Liuzhou, Shijiao, and Wuzhou Stations. Comparison of the Nash-Sutcliffe efficiency coefficient (NSE shows that the peak flow simulation ability of CLHMS driven with the CMPA-Daily rainfall is relatively superior to that with the EA and APHRODITE datasets. The simulation results for the high-flow periods in 1998 and 2005 indicate that the CLHMS is promising for its future application in the flood simulation and prediction.

  3. How do the methodological choices of your climate change study affect your results? A hydrologic case study across the Pacific Northwest

    Science.gov (United States)

    Chegwidden, O.; Nijssen, B.; Rupp, D. E.; Kao, S. C.; Clark, M. P.

    2017-12-01

    We describe results from a large hydrologic climate change dataset developed across the Pacific Northwestern United States and discuss how the analysis of those results can be seen as a framework for other large hydrologic ensemble investigations. This investigation will better inform future modeling efforts and large ensemble analyses across domains within and beyond the Pacific Northwest. Using outputs from the Coupled Model Intercomparison Project Phase 5 (CMIP5), we provide projections of hydrologic change for the domain through the end of the 21st century. The dataset is based upon permutations of four methodological choices: (1) ten global climate models (2) two representative concentration pathways (3) three meteorological downscaling methods and (4) four unique hydrologic model set-ups (three of which entail the same hydrologic model using independently calibrated parameter sets). All simulations were conducted across the Columbia River Basin and Pacific coastal drainages at a 1/16th ( 6 km) resolution and at a daily timestep. In total, the 172 distinct simulations offer an updated, comprehensive view of climate change projections through the end of the 21st century. The results consist of routed streamflow at 400 sites throughout the domain as well as distributed spatial fields of relevant hydrologic variables like snow water equivalent and soil moisture. In this presentation, we discuss the level of agreement with previous hydrologic projections for the study area and how these projections differ with specific methodological choices. By controlling for some methodological choices we can show how each choice affects key climatic change metrics. We discuss how the spread in results varies across hydroclimatic regimes. We will use this large dataset as a case study for distilling a wide range of hydroclimatological projections into useful climate change assessments.

  4. SNP-based pathway enrichment analysis for genome-wide association studies

    Directory of Open Access Journals (Sweden)

    Potkin Steven G

    2011-04-01

    Full Text Available Abstract Background Recently we have witnessed a surge of interest in using genome-wide association studies (GWAS to discover the genetic basis of complex diseases. Many genetic variations, mostly in the form of single nucleotide polymorphisms (SNPs, have been identified in a wide spectrum of diseases, including diabetes, cancer, and psychiatric diseases. A common theme arising from these studies is that the genetic variations discovered by GWAS can only explain a small fraction of the genetic risks associated with the complex diseases. New strategies and statistical approaches are needed to address this lack of explanation. One such approach is the pathway analysis, which considers the genetic variations underlying a biological pathway, rather than separately as in the traditional GWAS studies. A critical challenge in the pathway analysis is how to combine evidences of association over multiple SNPs within a gene and multiple genes within a pathway. Most current methods choose the most significant SNP from each gene as a representative, ignoring the joint action of multiple SNPs within a gene. This approach leads to preferential identification of genes with a greater number of SNPs. Results We describe a SNP-based pathway enrichment method for GWAS studies. The method consists of the following two main steps: 1 for a given pathway, using an adaptive truncated product statistic to identify all representative (potentially more than one SNPs of each gene, calculating the average number of representative SNPs for the genes, then re-selecting the representative SNPs of genes in the pathway based on this number; and 2 ranking all selected SNPs by the significance of their statistical association with a trait of interest, and testing if the set of SNPs from a particular pathway is significantly enriched with high ranks using a weighted Kolmogorov-Smirnov test. We applied our method to two large genetically distinct GWAS data sets of schizophrenia, one

  5. Hydrologic Extremes and Risk Assessment under Non-stationarity

    Science.gov (United States)

    Mondal, A.

    2015-12-01

    In the context of hydrologic designs, robust assessment and communication of risk is crucial to ascertain a sustainable water future. Traditional methods for defining return period, risk or reliability assumes a stationary regime which may no longer be valid because of natural or man-made changes. Reformulations are suggested in recent literature to account for non-stationarity in the definition of hydrologic risk, as time evolves. This study presents a comparative analysis of design levels under non-stationarity based on time varying annual exceedance probabilities, waiting time of a hazardous event, number of hazardous events and probability of failure. A case study application is shown for peak streamflow in the flood-prone delta area of the Krishna River in India where an increasing trend in annual maximum flows are observed owing to persistent silting. Considerable disagreement is found between the design magnitudes of flood obtained by the different definitions of hydrologic risk. Such risk is also found to be highly sensitive to the assumed design life period and projections of trend in that period or beyond. Additionally, some critical points on the assumption of a deterministic non-stationary model for an observed natural process are also discussed. The findings highlight the necessity for a unifying framework for assessment and communication of hydrologic risk under transient hydro-climatic conditions. The concepts can also be extended to other applications such as regional hydrologic frequency analysis or development of precipitation intensity-duration-frequency relationships for infrastructure design.

  6. Hydrologic Landscape Classification to Estimate Bristol Bay Watershed Hydrology

    Science.gov (United States)

    The use of hydrologic landscapes has proven to be a useful tool for broad scale assessment and classification of landscapes across the United States. These classification systems help organize larger geographical areas into areas of similar hydrologic characteristics based on cl...

  7. Biomarker Identification and Pathway Analysis by Serum Metabolomics of Lung Cancer

    Directory of Open Access Journals (Sweden)

    Yingrong Chen

    2015-01-01

    Full Text Available Lung cancer is one of the most common causes of cancer death, for which no validated tumor biomarker is sufficiently accurate to be useful for diagnosis. Additionally, the metabolic alterations associated with the disease are unclear. In this study, we investigated the construction, interaction, and pathways of potential lung cancer biomarkers using metabolomics pathway analysis based on the Kyoto Encyclopedia of Genes and Genomes database and the Human Metabolome Database to identify the top altered pathways for analysis and visualization. We constructed a diagnostic model using potential serum biomarkers from patients with lung cancer. We assessed their specificity and sensitivity according to the area under the curve of the receiver operator characteristic (ROC curves, which could be used to distinguish patients with lung cancer from normal subjects. The pathway analysis indicated that sphingolipid metabolism was the top altered pathway in lung cancer. ROC curve analysis indicated that glycerophospho-N-arachidonoyl ethanolamine (GpAEA and sphingosine were potential sensitive and specific biomarkers for lung cancer diagnosis and prognosis. Compared with the traditional lung cancer diagnostic biomarkers carcinoembryonic antigen and cytokeratin 19 fragment, GpAEA and sphingosine were as good or more appropriate for detecting lung cancer. We report our identification of potential metabolic diagnostic and prognostic biomarkers of lung cancer and clarify the metabolic alterations in lung cancer.

  8. Global-Scale Hydrology: Simple Characterization of Complex Simulation

    Science.gov (United States)

    Koster, Randal D.

    1999-01-01

    Atmospheric general circulation models (AGCMS) are unique and valuable tools for the analysis of large-scale hydrology. AGCM simulations of climate provide tremendous amounts of hydrological data with a spatial and temporal coverage unmatched by observation systems. To the extent that the AGCM behaves realistically, these data can shed light on the nature of the real world's hydrological cycle. In the first part of the seminar, I will describe the hydrological cycle in a typical AGCM, with some emphasis on the validation of simulated precipitation against observations. The second part of the seminar will focus on a key goal in large-scale hydrology studies, namely the identification of simple, overarching controls on hydrological behavior hidden amidst the tremendous amounts of data produced by the highly complex AGCM parameterizations. In particular, I will show that a simple 50-year-old climatological relation (and a recent extension we made to it) successfully predicts, to first order, both the annual mean and the interannual variability of simulated evaporation and runoff fluxes. The seminar will conclude with an example of a practical application of global hydrology studies. The accurate prediction of weather statistics several months in advance would have tremendous societal benefits, and conventional wisdom today points at the use of coupled ocean-atmosphere-land models for such seasonal-to-interannual prediction. Understanding the hydrological cycle in AGCMs is critical to establishing the potential for such prediction. Our own studies show, among other things, that soil moisture retention can lead to significant precipitation predictability in many midlatitude and tropical regions.

  9. Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types

    Directory of Open Access Journals (Sweden)

    Zhongqi Ge

    2018-04-01

    Full Text Available Summary: Protein ubiquitination is a dynamic and reversible process of adding single ubiquitin molecules or various ubiquitin chains to target proteins. Here, using multidimensional omic data of 9,125 tumor samples across 33 cancer types from The Cancer Genome Atlas, we perform comprehensive molecular characterization of 929 ubiquitin-related genes and 95 deubiquitinase genes. Among them, we systematically identify top somatic driver candidates, including mutated FBXW7 with cancer-type-specific patterns and amplified MDM2 showing a mutually exclusive pattern with BRAF mutations. Ubiquitin pathway genes tend to be upregulated in cancer mediated by diverse mechanisms. By integrating pan-cancer multiomic data, we identify a group of tumor samples that exhibit worse prognosis. These samples are consistently associated with the upregulation of cell-cycle and DNA repair pathways, characterized by mutated TP53, MYC/TERT amplification, and APC/PTEN deletion. Our analysis highlights the importance of the ubiquitin pathway in cancer development and lays a foundation for developing relevant therapeutic strategies. : Ge et al. analyze a cohort of 9,125 TCGA samples across 33 cancer types to provide a comprehensive characterization of the ubiquitin pathway. They detect somatic driver candidates in the ubiquitin pathway and identify a cluster of patients with poor survival, highlighting the importance of this pathway in cancer development. Keywords: ubiquitin pathway, pan-cancer analysis, The Cancer Genome Atlas, tumor subtype, cancer prognosis, therapeutic targets, biomarker, FBXW7

  10. Low flow hydrology: a review

    CSIR Research Space (South Africa)

    Smakhtin, VU

    2001-01-10

    Full Text Available The paper intends to review the current status of low-flow hydrology — a discipline which deals with minimum flow in a river during the dry periods of the year. The discussion starts with the analysis of low-flow generating mechanisms operating...

  11. Investigating impacts of natural and human-induced environmental changes on hydrological processes and flood hazards using a GIS-based hydrological/hydraulic model and remote sensing data

    Science.gov (United States)

    Wang, Lei

    Natural and human-induced environmental changes have been altering the earth's surface and hydrological processes, and thus directly contribute to the severity of flood hazards. To understand these changes and their impacts, this research developed a GIS-based hydrological and hydraulic modeling system, which incorporates state-of-the-art remote sensing data to simulate flood under various scenarios. The conceptual framework and technical issues of incorporating multi-scale remote sensing data have been addressed. This research develops an object-oriented hydrological modeling framework. Compared with traditional lumped or cell-based distributed hydrological modeling frameworks, the object-oriented framework allows basic spatial hydrologic units to have various size and irregular shape. This framework is capable of assimilating various GIS and remotely-sensed data with different spatial resolutions. It ensures the computational efficiency, while preserving sufficient spatial details of input data and model outputs. Sensitivity analysis and comparison of high resolution LIDAR DEM with traditional USGS 30m resolution DEM suggests that the use of LIDAR DEMs can greatly reduce uncertainty in calibration of flow parameters in the hydrologic model and hence increase the reliability of modeling results. In addition, subtle topographic features and hydrologic objects like surface depressions and detention basins can be extracted from the high resolution LiDAR DEMs. An innovative algorithm has been developed to efficiently delineate surface depressions and detention basins from LiDAR DEMs. Using a time series of Landsat images, a retrospective analysis of surface imperviousness has been conducted to assess the hydrologic impact of urbanization. The analysis reveals that with rapid urbanization the impervious surface has been increased from 10.1% to 38.4% for the case study area during 1974--2002. As a result, the peak flow for a 100-year flood event has increased by 20% and

  12. Hydrology and soil erosion

    Science.gov (United States)

    Leonard J. Lane; Mary R. Kidwell

    2003-01-01

    We review research on surface water hydrology and soil erosion at the Santa Rita Experimental Range (SRER). Almost all of the research was associated with eight small experimental watersheds established from 1974 to 1975 and operated until the present. Analysis of climatic features of the SRER supports extending research findings from the SRER to broad areas of the...

  13. Hydrology in a Mediterranean mountain environment, the Vallcebre Research basins (North Eastern Spain). IV. Testing hydrological and erosion models

    International Nuclear Information System (INIS)

    Gallart, F.; Latron, J.; Llorens, P.; Martinez-Carreras, N.

    2009-01-01

    Three modelling exercises were carried out in the Vallcebre research basins in order to both improve the understanding of the hydrological processes and test the adequate of some models in such Mediterranean mountain conditions. These exercises consisted of i) the analysis of the hydrological role of the agricultural terraces using the TOPMODEL topographic index, ii) the parametrisation of TOPMODEL using internal basin information, and iii) a test of the erosion model KINEROS2 for simulating badlands erosion. (Author) 13 refs.

  14. Hydrology Domain Cyberinfrastructures: Successes, Challenges, and Opportunities

    Science.gov (United States)

    Horsburgh, J. S.

    2015-12-01

    Anticipated changes to climate, human population, land use, and urban form will alter the hydrology and availability of water within the water systems on which the world's population relies. Understanding the effects of these changes will be paramount in sustainably managing water resources, as well as maintaining associated capacity to provide ecosystem services (e.g., regulating flooding, maintaining instream flow during dry periods, cycling nutrients, and maintaining water quality). It will require better information characterizing both natural and human mediated hydrologic systems and enhanced ability to generate, manage, store, analyze, and share growing volumes of observational data. Over the past several years, a number of hydrology domain cyberinfrastructures have emerged or are currently under development that are focused on providing integrated access to and analysis of data for cross-domain synthesis studies. These include the Consortium of Universities for the Advancement of Hydrologic Science, Inc. (CUAHSI) Hydrologic Information System (HIS), the Critical Zone Observatory Information System (CZOData), HyroShare, the BiG CZ software system, and others. These systems have focused on sharing, integrating, and analyzing hydrologic observations data. This presentation will describe commonalities and differences in the cyberinfrastructure approaches used by these projects and will highlight successes and lessons learned in addressing the challenges of big and complex data. It will also identify new challenges and opportunities for next generation cyberinfrastructure and a next generation of cyber-savvy scientists and engineers as developers and users.

  15. Towards a delimitation of southwestern Nigeria into hydrological regions

    Science.gov (United States)

    Ogunkoya, O. O.

    1988-05-01

    Fifteen third-order drainage basins (1:50,000) on the Basement Complex rocks of southwestern Nigeria are classified into hydrological regions using hydrologic response parameters of average daily mean specific discharge ( QA); daily mean specific discharges equalled or exceeded 90% ( Q90), 50% ( Q50) and 10% ( Q10) of the study period; variability index of flow ( VI); recession constant ( K) of flow from peak discharge at the end of the rainy season to minimum discharge in the dry season; total annual runoff ( RO); total runoff within the dry season ( DSRO); dry season runoff as a percentage of total annual runoff (% DSRO); runoff coefficient ( ROC); and, number of days during the study period when there was no flow ( NFD). An ordination technique and a classification algorithm derived from cluster analysis technique and incorporating the analysis of variance (ANOVA) tests to determine the level of significance of the homogeneity of derived classes, were used to classify the fifteen basins into five hydrologically homogeneous regions. The constituent basins of each region were observed to share common basin geology. It was observed that those drainage basins having at least 50% of their basin area underlain by quartzitic rocks form two groups and have the most desirable or optimal hydrologic response patterns, desirability or optimality being in terms of ability to potentially meet water resource development requirements (i.e. high perennial discharge, low variability and large groundwater contribution to stream flow). The basins predominantly underlain by granite-gneisses and amphibolitic rocks have much poorer hydrologic response patterns. Hydrological regionalization in southwestern Nigeria appears to be influenced by drainage basin geology while percentage area of the basin underlain by massive quartzites could be used as an index of occurrence of desirable hydrologic response pattern.

  16. Systems approach to tracer data in groundwater hydrology

    International Nuclear Information System (INIS)

    Saxena, R.K.

    1977-01-01

    A brief review of current mathematical methods for the analysis of tracer data in groundwater hydrology has been given. The description of the hydrological cycle as a whole or in part, by a system (compartment) or sub-system under linear and stationary conditions is discussed. Basic concepts of transit time, residence time, their distributions in time and response characteristics of a system are outlined. From the knowledge of tracer input, output and systems response function for a generalised system, reservoir capacity and storage for given period can be estimated. Use of a time series model for environmental tracer data in discreet time scale aimed at the solution of hydrological problems e.g. mean transit time and reservoir capacity is also explored. It is concluded that the combination of tracer data with systems approach can go a long way in the study of some complex hydrological problems. (author)

  17. Site study plan for regional hydrologic sampling and monitoring: Preliminary draft

    International Nuclear Information System (INIS)

    Dutton, A.R.

    1987-01-01

    The purpose of the Regional Hydrologic Studies Plan is to describe those field activities required for completion of the objectives of hydrologic activities. Many of these activities are regional in scope and are designed to provide a framework for understanding the hydrologic setting of the site and the hydrologic processes that influence site characteristics. Site Study Plans (SSPs) define activates at and in the immediate vicinity of the site. The activities specified in the Regional Hydrologic Studies Plan are performed beyond the confines of the site because the hydrologic systems extend beyond the site boundaries, because pertinent data that bear on site suitability are available outside of the site, and because natural analogues exist outside of the site that allow analysis of processes that are expected to operate within the site. 15 refs., 5 figs., 1 tab

  18. Simulating hydrological processes of a typical small mountainous catchment in Tibetan Plateau

    Science.gov (United States)

    Xu, Y. P.; Bai, Z.; Fu, Q.; Pan, S.; Zhu, C.

    2017-12-01

    Water cycle of small watersheds with seasonal/permanent frozen soil and snow pack in Tibetan Plateau is seriously affected by climate change. The objective of this study is to find out how much and in what way the frozen soil and snow pack will influence the hydrology of small mountainous catchments in cold regions and how can the performance of simulation by a distributed hydrological model be improved. The Dong catchment, a small catchment located in Tibetan Plateau, is used as a case study. Two measurement stations are set up to collect basic meteorological and hydrological data for the modeling purpose. Annual and interannual variations of runoff indices are first analyzed based on historic data series. The sources of runoff in dry periods and wet periods are analyzed respectively. Then, a distributed hydrology soil vegetation model (DHSVM) is adopted to simulate the hydrological process of Dong catchment based on limited data set. Global sensitivity analysis is applied to help determine the important processes of the catchment. Based on sensitivity analysis results, the Epsilon-Dominance Non-Dominated Sorted Genetic Algorithm II (ɛ-NSGAII) is finally added into the hydrological model to calibrate the hydrological model in a multi-objective way and analyze the performance of DHSVM model. The performance of simulation is evaluated with several evaluation indices. The final results show that frozen soil and snow pack do play an important role in hydrological processes in cold mountainous region, in particular in dry periods without precipitation, while in wet periods precipitation is often the main source of runoff. The results also show that although the DHSVM hydrological model has the potential to model the hydrology well in small mountainous catchments with very limited data in Tibetan Plateau, the simulation of hydrology in dry periods is not very satisfactory due to the model's insufficiency in simulating seasonal frozen soil.

  19. Geomorphological Analysis and Hydrological Potential Zone of Baira River Watershed, Churah in Chamba District of Himachal Pradesh, India

    Directory of Open Access Journals (Sweden)

    Kuldeep Pareta

    2017-03-01

    Full Text Available In the present study, an attempt has been made to study the quantitative geomorphological analysis and hydrological characterization of 95 micro-watersheds (MWS of Baira river watershed in Himachal Pradesh, India with an area of 425.25 Km2. First time in the world, total 173 morphometric parameters have been generated in a single watershed using satellite remote sensing data (i.e. IRS-P6 ResourceSAT-1 LISS-III, LandSAT-7 ETM+, and LandSAT-8 PAN & OLI merge data, digital elevation models (i.e. IRS-P5 CartoSAT-1 DEM, ASTER DEM data, and soI topographical maps of 1: 50,000 scale. The ninety-five micro-watersheds (MWS of Baira river watershed have been prioritized through the morphometric analysis of different morphometric parameters (i.e. drainage network, basin geometry, drainage texture analysis, and relief characterizes . The study has concurrently established the importance of geomorphometry as well as the utility of remote sensing and GIS technology for hydrological characterization of the watershed and there for better resource and environmental managements.

  20. Advancing Collaboration through Hydrologic Data and Model Sharing

    Science.gov (United States)

    Tarboton, D. G.; Idaszak, R.; Horsburgh, J. S.; Ames, D. P.; Goodall, J. L.; Band, L. E.; Merwade, V.; Couch, A.; Hooper, R. P.; Maidment, D. R.; Dash, P. K.; Stealey, M.; Yi, H.; Gan, T.; Castronova, A. M.; Miles, B.; Li, Z.; Morsy, M. M.

    2015-12-01

    HydroShare is an online, collaborative system for open sharing of hydrologic data, analytical tools, and models. It supports the sharing of and collaboration around "resources" which are defined primarily by standardized metadata, content data models for each resource type, and an overarching resource data model based on the Open Archives Initiative's Object Reuse and Exchange (OAI-ORE) standard and a hierarchical file packaging system called "BagIt". HydroShare expands the data sharing capability of the CUAHSI Hydrologic Information System by broadening the classes of data accommodated to include geospatial and multidimensional space-time datasets commonly used in hydrology. HydroShare also includes new capability for sharing models, model components, and analytical tools and will take advantage of emerging social media functionality to enhance information about and collaboration around hydrologic data and models. It also supports web services and server/cloud based computation operating on resources for the execution of hydrologic models and analysis and visualization of hydrologic data. HydroShare uses iRODS as a network file system for underlying storage of datasets and models. Collaboration is enabled by casting datasets and models as "social objects". Social functions include both private and public sharing, formation of collaborative groups of users, and value-added annotation of shared datasets and models. The HydroShare web interface and social media functions were developed using the Django web application framework coupled to iRODS. Data visualization and analysis is supported through the Tethys Platform web GIS software stack. Links to external systems are supported by RESTful web service interfaces to HydroShare's content. This presentation will introduce the HydroShare functionality developed to date and describe ongoing development of functionality to support collaboration and integration of data and models.

  1. Hydrological threats to riparian wetlands of international importance – a global quantitative and qualitative analysis

    Directory of Open Access Journals (Sweden)

    C. Schneider

    2017-06-01

    Full Text Available Riparian wetlands have been disappearing at an accelerating rate. Their ecological integrity as well as their vital ecosystem services for humankind depend on regular patterns of inundation and drying provided by natural flow regimes. However, river hydrology has been altered worldwide. Dams cause less variable flow regimes and water abstractions decrease the amount of flow so that ecologically important flood pulses are often reduced. Given growing population pressure and projected climate change, immediate action is required. However, the implementation of counteractive measures is often a complex task. This study develops a screening tool for assessing hydrological threats to riparian wetlands on global scales. The approach is exemplified on 93 Ramsar sites, many of which are located in transboundary basins. First, the WaterGAP3 hydrological modeling framework is used to quantitatively compare current and future modified flow regimes to reference flow conditions. In our simulations current water resource management seriously impairs riparian wetland inundation at 29 % of the analyzed sites. A further 8 % experience significantly reduced flood pulses. In the future, eastern Europe, western Asia, as well as central South America could be hotspots of further flow modifications due to climate change. Second, a qualitative analysis of the 93 sites determined potential impact on overbank flows resulting from planned or proposed dam construction projects. They take place in one-third of the upstream areas and are likely to impair especially wetlands located in South America, Asia, and the Balkan Peninsula. Third, based on the existing legal/institutional framework and water resource availability upstream, further qualitative analysis evaluated the capacity to preserve overbank flows given future streamflow changes due to dam construction and climate change. Results indicate hotspots of vulnerability exist, especially in northern Africa and the

  2. Physical hydrology and the effects of forest harvesting in the Pacific Northwest: a review.

    Science.gov (United States)

    R. Dan Moore; S.M. Wondzell

    2005-01-01

    The Pacific Northwest encompasses a range of hydrologic regimes that can be broadly characterized as either coastal (where rain and rain on snow are dominant) or interior (where snowmelt is dominant). Forest harvesting generally increases the fraction of precipitation that is available to become streamflow, increases rates of snowmelt, and modifies the runoff pathways...

  3. Regional basalt hydrology of the Columbia Plateau in Washington

    International Nuclear Information System (INIS)

    Tanaka, H.; Barrett, G.; Wildrick, L.

    1979-10-01

    This study is part of the Basalt Waste Isolation Project, operated for the US Department of Energy by Rockwell Hanford Operations. The overall purpose of the study is to assess locations within the Columbia River Basalt Group beneath the Hanford Site in south-central Washington suitable for a geologic repository for radioactive waste. This hydrologic study was made to describe the hydrologic characteristics of the basalt units of the Columbia Plateau. This was done by comprehensive data compilation, data interpretation and analysis. Data are presented in the form of maps and tables suitable as input information about the regional hydrology for possible future analysis by computer models. The report includes: an introduction; basic data; interpretation which covers stratigraphic trend surface, water levels, transmissivity and storage of aquifers, recharge, discharge, flow, subbasins, cross sections, references and appendix of record of wells

  4. Sensitive analysis of low-flow parameters using the hourly hydrological model for two mountainous basins in Japan

    Science.gov (United States)

    Fujimura, Kazumasa; Iseri, Yoshihiko; Kanae, Shinjiro; Murakami, Masahiro

    2014-05-01

    Accurate estimation of low flow can contribute to better water resources management and also lead to more reliable evaluation of climate change impacts on water resources. In the early study, the nonlinearity of low flow related to the storage in the basin was suggested by Horton (1937) as the exponential function of Q=KSN, where Q is the discharge, S is the storage, K is a constant and N is the exponent value. In the recent study by Ding (2011) showed the general storage-discharge equation of Q = KNSN. Since the constant K is defined as the fractional recession constant and symbolized as Au by Ando et al. (1983), in this study, we rewrite this equation as Qg=AuNSgN, where Qg is the groundwater runoff and Sg is the groundwater storage. Although this equation was applied to a short-term runoff event of less than 14 hours using the unit hydrograph method by Ding, it was not yet applied for a long-term runoff event including low flow more than 10 years. This study performed a sensitive analysis of two parameters of the constant Au and exponent value N by using the hourly hydrological model for two mountainous basins in Japan. The hourly hydrological model used in this study was presented by Fujimura et al. (2012), which comprise the Diskin-Nazimov infiltration model, groundwater recharge and groundwater runoff calculations, and a direct runoff component. The study basins are the Sameura Dam basin (SAME basin) (472 km2) located in the western Japan which has variability of rainfall, and the Shirakawa Dam basin (SIRA basin) (205km2) located in a region of heavy snowfall in the eastern Japan, that are different conditions of climate and geology. The period of available hourly data for the SAME basin is 20 years from 1 January 1991 to 31 December 2010, and for the SIRA basin is 10 years from 1 October 2003 to 30 September 2013. In the sensitive analysis, we prepared 19900 sets of the two parameters of Au and N, the Au value ranges from 0.0001 to 0.0100 in steps of 0

  5. Pathway Analysis of miR-181a in Hypopharyngeal Squamous Cell ...

    African Journals Online (AJOL)

    syakima

    2012-03-15

    Mar 15, 2012 ... Key words: MicroRNA, head and neck cancer, miR-181a, pathway analysis, luciferase assay, FaDu cell line, transfection ..... prostate carcinoma and glioblastoma cells. Nucleic Acids .... WNT pathway in oral cancer: epigenetic.

  6. Development of spatial data guidelines and standards: spatial data set documentation to support hydrologic analysis in the U.S. Geological Survey

    Science.gov (United States)

    Fulton, James L.

    1992-01-01

    Spatial data analysis has become an integral component in many surface and sub-surface hydrologic investigations within the U.S. Geological Survey (USGS). Currently, one of the largest costs in applying spatial data analysis is the cost of developing the needed spatial data. Therefore, guidelines and standards are required for the development of spatial data in order to allow for data sharing and reuse; this eliminates costly redevelopment. In order to attain this goal, the USGS is expanding efforts to identify guidelines and standards for the development of spatial data for hydrologic analysis. Because of the variety of project and database needs, the USGS has concentrated on developing standards for documenting spatial sets to aid in the assessment of data set quality and compatibility of different data sets. An interim data set documentation standard (1990) has been developed that provides a mechanism for associating a wide variety of information with a data set, including data about source material, data automation and editing procedures used, projection parameters, data statistics, descriptions of features and feature attributes, information on organizational contacts lists of operations performed on the data, and free-form comments and notes about the data, made at various times in the evolution of the data set. The interim data set documentation standard has been automated using a commercial geographic information system (GIS) and data set documentation software developed by the USGS. Where possible, USGS developed software is used to enter data into the data set documentation file automatically. The GIS software closely associates a data set with its data set documentation file; the documentation file is retained with the data set whenever it is modified, copied, or transferred to another computer system. The Water Resources Division of the USGS is continuing to develop spatial data and data processing standards, with emphasis on standards needed to support

  7. CRITICAL RADIONUCLIDE AND PATHWAY ANALYSIS FOR THE SAVANNAH RIVER SITE

    Energy Technology Data Exchange (ETDEWEB)

    Jannik, T.

    2011-08-30

    This report is an update to the analysis, Assessment of SRS Radiological Liquid and Airborne Contaminants and Pathways, that was performed in 1997. An electronic version of this large original report is included in the attached CD to this report. During the operational history (1954 to the present) of the Savannah River Site (SRS), many different radionuclides have been released to the environment from the various production facilities. However, as will be shown by this updated radiological critical contaminant/critical pathway analysis, only a small number of the released radionuclides have been significant contributors to potential doses and risks to offsite people. The analysis covers radiological releases to the atmosphere and to surface waters, the principal media that carry contaminants offsite. These releases potentially result in exposure to offsite people. The groundwater monitoring performed at the site shows that an estimated 5 to 10% of SRS has been contaminated by radionuclides, no evidence exists from the extensive monitoring performed that groundwater contaminated with these constituents has migrated off the site (SRS 2011). Therefore, with the notable exception of radiological source terms originating from shallow surface water migration into site streams, onsite groundwater was not considered as a potential exposure pathway to offsite people. In addition, in response to the Department of Energy's (DOE) Order 435.1, several Performance Assessments (WSRC 2008; LWO 2009; SRR 2010; SRR 2011) and a Comprehensive SRS Composite Analysis (SRNO 2010) have recently been completed at SRS. The critical radionuclides and pathways identified in these extensive reports are discussed and, where applicable, included in this analysis.

  8. Water System Adaptation To Hydrological Changes: Module 14, Life Cycle Analysis (LCA) and Prioritization Tools in Water System Adaptation

    Science.gov (United States)

    This course will introduce students to the fundamental principles of water system adaptation to hydrological changes, with emphasis on data analysis and interpretation, technical planning, and computational modeling. Starting with real-world scenarios and adaptation needs, the co...

  9. Energy pathway analysis - a hydrogen fuel cycle framework for system studies

    International Nuclear Information System (INIS)

    Badin, J.S.; Tagore, S.

    1997-01-01

    An analytical framework has been developed that can be used to estimate a range of life-cycle costs and impacts that result from the incremental production, storage, transport, and use of different fuels or energy carriers, such as hydrogen, electricity, natural gas, and gasoline. This information is used in a comparative analysis of energy pathways. The pathways provide the U.S. Department of Energy (DOE) with an indication of near-, mid-, and long-term technologies that have the greatest potential for advancement and can meet the cost goals. The methodology and conceptual issues are discussed. Also presented are results for selected pathways from the E3 (Energy, Economics, Emissions) Pathway Analysis Model. This model will be expanded to consider networks of pathways and to be compatible with a linear programming optimization processor. Scenarios and sets of constraints (energy demands, sources, emissions) will be defined so the effects on energy transformation activities included in the solution and on the total optimized system cost can be investigated. This evaluation will be used as a guide to eliminate technically feasible pathways if they are not cost effective or do not meet the threshold requirements for the market acceptance. (Author)

  10. PathNet: a tool for pathway analysis using topological information

    Directory of Open Access Journals (Sweden)

    Dutta Bhaskar

    2012-09-01

    Full Text Available Abstract Background Identification of canonical pathways through enrichment of differentially expressed genes in a given pathway is a widely used method for interpreting gene lists generated from high-throughput experimental studies. However, most algorithms treat pathways as sets of genes, disregarding any inter- and intra-pathway connectivity information, and do not provide insights beyond identifying lists of pathways. Results We developed an algorithm (PathNet that utilizes the connectivity information in canonical pathway descriptions to help identify study-relevant pathways and characterize non-obvious dependencies and connections among pathways using gene expression data. PathNet considers both the differential expression of genes and their pathway neighbors to strengthen the evidence that a pathway is implicated in the biological conditions characterizing the experiment. As an adjunct to this analysis, PathNet uses the connectivity of the differentially expressed genes among all pathways to score pathway contextual associations and statistically identify biological relations among pathways. In this study, we used PathNet to identify biologically relevant results in two Alzheimer’s disease microarray datasets, and compared its performance with existing methods. Importantly, PathNet identified de-regulation of the ubiquitin-mediated proteolysis pathway as an important component in Alzheimer’s disease progression, despite the absence of this pathway in the standard enrichment analyses. Conclusions PathNet is a novel method for identifying enrichment and association between canonical pathways in the context of gene expression data. It takes into account topological information present in pathways to reveal biological information. PathNet is available as an R workspace image from http://www.bhsai.org/downloads/pathnet/.

  11. The use of distributed hydrological models for the Gard 2002 flash flood event: Analysis of associated hydrological processes

    Science.gov (United States)

    Braud, Isabelle; Roux, Hélène; Anquetin, Sandrine; Maubourguet, Marie-Madeleine; Manus, Claire; Viallet, Pierre; Dartus, Denis

    2010-11-01

    SummaryThis paper presents a detailed analysis of the September 8-9, 2002 flash flood event in the Gard region (southern France) using two distributed hydrological models: CVN built within the LIQUID® hydrological platform and MARINE. The models differ in terms of spatial discretization, infiltration and water redistribution representation, and river flow transfer. MARINE can also account for subsurface lateral flow. Both models are set up using the same available information, namely a DEM and a pedology map. They are forced with high resolution radar rainfall data over a set of 18 sub-catchments ranging from 2.5 to 99 km2 and are run without calibration. To begin with, models simulations are assessed against post field estimates of the time of peak and the maximum peak discharge showing a fair agreement for both models. The results are then discussed in terms of flow dynamics, runoff coefficients and soil saturation dynamics. The contribution of the subsurface lateral flow is also quantified using the MARINE model. This analysis highlights that rainfall remains the first controlling factor of flash flood dynamics. High rainfall peak intensities are very influential of the maximum peak discharge for both models, but especially for the CVN model which has a simplified overland flow transfer. The river bed roughness also influences the peak intensity and time. Soil spatial representation is shown to have a significant role on runoff coefficients and on the spatial variability of saturation dynamics. Simulated soil saturation is found to be strongly related with soil depth and initial storage deficit maps, due to a full saturation of most of the area at the end of the event. When activated, the signature of subsurface lateral flow is also visible in the spatial patterns of soil saturation with higher values concentrating along the river network. However, the data currently available do not allow the assessment of both patterns. The paper concludes with a set of

  12. Hydrologic response to and recovery from differing silvicultural systems in a deciduous forest landscape with seasonal snow cover

    Science.gov (United States)

    Buttle, J. M.; Beall, F. D.; Webster, K. L.; Hazlett, P. W.; Creed, I. F.; Semkin, R. G.; Jeffries, D. S.

    2018-02-01

    Hydrological consequences of alternative harvesting strategies in deciduous forest landscapes with seasonal snow cover have received relatively little attention. Most forest harvesting experiments in landscapes with seasonal snow cover have focused on clearcutting in coniferous forests. Few have examined alternative strategies such as selection or shelterwood cutting in deciduous stands whose hydrologic responses to harvesting may differ from those of conifers. This study presents results from a 31-year examination of hydrological response to and recovery from alternative harvesting strategies in a deciduous forest landscape with seasonal snow cover in central Ontario, Canada. A quantitative means of assessing hydrologic recovery to harvesting is also developed. Clearcutting resulted in increased water year (WY) runoff. This was accompanied by increased runoff in all seasons, with greatest relative increases in Summer. Direct runoff and baseflow from treatment catchments generally increased following harvesting, although annual peak streamflow did not. Largest increases in WY runoff and seasonal runoff as well as direct runoff and baseflow generally occurred in the selection harvest catchment, likely as a result of interception of hillslope runoff by a forest access road and redirection to the stream channel. Hydrologic recovery appeared to begin towards the end of the experimental period for several streamflow metrics but was incomplete for all harvesting strategies 15 years after harvesting. Geochemical tracing indicated that harvesting enhanced the relative importance of surface and near-surface water pathways on catchment slopes for all treatments, with the clearcut catchment showing the most pronounced and prolonged response. Such insights into water partitioning between flow pathways may assist assessments of the ecological and biogeochemical consequences of forest disturbance.

  13. Non-stationary hydrologic frequency analysis using B-spline quantile regression

    Science.gov (United States)

    Nasri, B.; Bouezmarni, T.; St-Hilaire, A.; Ouarda, T. B. M. J.

    2017-11-01

    Hydrologic frequency analysis is commonly used by engineers and hydrologists to provide the basic information on planning, design and management of hydraulic and water resources systems under the assumption of stationarity. However, with increasing evidence of climate change, it is possible that the assumption of stationarity, which is prerequisite for traditional frequency analysis and hence, the results of conventional analysis would become questionable. In this study, we consider a framework for frequency analysis of extremes based on B-Spline quantile regression which allows to model data in the presence of non-stationarity and/or dependence on covariates with linear and non-linear dependence. A Markov Chain Monte Carlo (MCMC) algorithm was used to estimate quantiles and their posterior distributions. A coefficient of determination and Bayesian information criterion (BIC) for quantile regression are used in order to select the best model, i.e. for each quantile, we choose the degree and number of knots of the adequate B-spline quantile regression model. The method is applied to annual maximum and minimum streamflow records in Ontario, Canada. Climate indices are considered to describe the non-stationarity in the variable of interest and to estimate the quantiles in this case. The results show large differences between the non-stationary quantiles and their stationary equivalents for an annual maximum and minimum discharge with high annual non-exceedance probabilities.

  14. Pathway-Based Kernel Boosting for the Analysis of Genome-Wide Association Studies

    Science.gov (United States)

    Manitz, Juliane; Burger, Patricia; Amos, Christopher I.; Chang-Claude, Jenny; Wichmann, Heinz-Erich; Kneib, Thomas; Bickeböller, Heike

    2017-01-01

    The analysis of genome-wide association studies (GWAS) benefits from the investigation of biologically meaningful gene sets, such as gene-interaction networks (pathways). We propose an extension to a successful kernel-based pathway analysis approach by integrating kernel functions into a powerful algorithmic framework for variable selection, to enable investigation of multiple pathways simultaneously. We employ genetic similarity kernels from the logistic kernel machine test (LKMT) as base-learners in a boosting algorithm. A model to explain case-control status is created iteratively by selecting pathways that improve its prediction ability. We evaluated our method in simulation studies adopting 50 pathways for different sample sizes and genetic effect strengths. Additionally, we included an exemplary application of kernel boosting to a rheumatoid arthritis and a lung cancer dataset. Simulations indicate that kernel boosting outperforms the LKMT in certain genetic scenarios. Applications to GWAS data on rheumatoid arthritis and lung cancer resulted in sparse models which were based on pathways interpretable in a clinical sense. Kernel boosting is highly flexible in terms of considered variables and overcomes the problem of multiple testing. Additionally, it enables the prediction of clinical outcomes. Thus, kernel boosting constitutes a new, powerful tool in the analysis of GWAS data and towards the understanding of biological processes involved in disease susceptibility. PMID:28785300

  15. Pathway-Based Kernel Boosting for the Analysis of Genome-Wide Association Studies.

    Science.gov (United States)

    Friedrichs, Stefanie; Manitz, Juliane; Burger, Patricia; Amos, Christopher I; Risch, Angela; Chang-Claude, Jenny; Wichmann, Heinz-Erich; Kneib, Thomas; Bickeböller, Heike; Hofner, Benjamin

    2017-01-01

    The analysis of genome-wide association studies (GWAS) benefits from the investigation of biologically meaningful gene sets, such as gene-interaction networks (pathways). We propose an extension to a successful kernel-based pathway analysis approach by integrating kernel functions into a powerful algorithmic framework for variable selection, to enable investigation of multiple pathways simultaneously. We employ genetic similarity kernels from the logistic kernel machine test (LKMT) as base-learners in a boosting algorithm. A model to explain case-control status is created iteratively by selecting pathways that improve its prediction ability. We evaluated our method in simulation studies adopting 50 pathways for different sample sizes and genetic effect strengths. Additionally, we included an exemplary application of kernel boosting to a rheumatoid arthritis and a lung cancer dataset. Simulations indicate that kernel boosting outperforms the LKMT in certain genetic scenarios. Applications to GWAS data on rheumatoid arthritis and lung cancer resulted in sparse models which were based on pathways interpretable in a clinical sense. Kernel boosting is highly flexible in terms of considered variables and overcomes the problem of multiple testing. Additionally, it enables the prediction of clinical outcomes. Thus, kernel boosting constitutes a new, powerful tool in the analysis of GWAS data and towards the understanding of biological processes involved in disease susceptibility.

  16. Pathway analysis of kidney cancer using proteomics and metabolic profiling

    Directory of Open Access Journals (Sweden)

    Fiehn Oliver

    2006-11-01

    Full Text Available Abstract Background Renal cell carcinoma (RCC is the sixth leading cause of cancer death and is responsible for 11,000 deaths per year in the US. Approximately one-third of patients present with disease which is already metastatic and for which there is currently no adequate treatment, and no biofluid screening tests exist for RCC. In this study, we have undertaken a comprehensive proteomic analysis and subsequently a pathway and network approach to identify biological processes involved in clear cell RCC (ccRCC. We have used these data to investigate urinary markers of RCC which could be applied to high-risk patients, or to those being followed for recurrence, for early diagnosis and treatment, thereby substantially reducing mortality of this disease. Results Using 2-dimensional electrophoresis and mass spectrometric analysis, we identified 31 proteins which were differentially expressed with a high degree of significance in ccRCC as compared to adjacent non-malignant tissue, and we confirmed some of these by immunoblotting, immunohistochemistry, and comparison to published transcriptomic data. When evaluated by several pathway and biological process analysis programs, these proteins are demonstrated to be involved with a high degree of confidence (p values Conclusion Extensive pathway and network analysis allowed for the discovery of highly significant pathways from a set of clear cell RCC samples. Knowledge of activation of these processes will lead to novel assays identifying their proteomic and/or metabolomic signatures in biofluids of patient at high risk for this disease; we provide pilot data for such a urinary bioassay. Furthermore, we demonstrate how the knowledge of networks, processes, and pathways altered in kidney cancer may be used to influence the choice of optimal therapy.

  17. HYDROLOGIC MODEL UNCERTAINTY ASSOCIATED WITH SIMULATING FUTURE LAND-COVER/USE SCENARIOS: A RETROSPECTIVE ANALYSIS

    Science.gov (United States)

    GIS-based hydrologic modeling offers a convenient means of assessing the impacts associated with land-cover/use change for environmental planning efforts. Alternative future scenarios can be used as input to hydrologic models and compared with existing conditions to evaluate pot...

  18. A micro-hydrology computation ordering algorithm

    Science.gov (United States)

    Croley, Thomas E.

    1980-11-01

    Discrete-distributed-parameter models are essential for watershed modelling where practical consideration of spatial variations in watershed properties and inputs is desired. Such modelling is necessary for analysis of detailed hydrologic impacts from management strategies and land-use effects. Trade-offs between model validity and model complexity exist in resolution of the watershed. Once these are determined, the watershed is then broken into sub-areas which each have essentially spatially-uniform properties. Lumped-parameter (micro-hydrology) models are applied to these sub-areas and their outputs are combined through the use of a computation ordering technique, as illustrated by many discrete-distributed-parameter hydrology models. Manual ordering of these computations requires fore-thought, and is tedious, error prone, sometimes storage intensive and least adaptable to changes in watershed resolution. A programmable algorithm for ordering micro-hydrology computations is presented that enables automatic ordering of computations within the computer via an easily understood and easily implemented "node" definition, numbering and coding scheme. This scheme and the algorithm are detailed in logic flow-charts and an example application is presented. Extensions and modifications of the algorithm are easily made for complex geometries or differing microhydrology models. The algorithm is shown to be superior to manual ordering techniques and has potential use in high-resolution studies.

  19. Advancing the Implementation of Hydrologic Models as Web-based Applications

    Science.gov (United States)

    Dahal, P.; Tarboton, D. G.; Castronova, A. M.

    2017-12-01

    Advanced computer simulations are required to understand hydrologic phenomenon such as rainfall-runoff response, groundwater hydrology, snow hydrology, etc. Building a hydrologic model instance to simulate a watershed requires investment in data (diverse geospatial datasets such as terrain, soil) and computer resources, typically demands a wide skill set from the analyst, and the workflow involved is often difficult to reproduce. This work introduces a web-based prototype infrastructure in the form of a web application that provides researchers with easy to use access to complete hydrological modeling functionality. This includes creating the necessary geospatial and forcing data, preparing input files for a model by applying complex data preprocessing, running the model for a user defined watershed, and saving the results to a web repository. The open source Tethys Platform was used to develop the web app front-end Graphical User Interface (GUI). We used HydroDS, a webservice that provides data preparation processing capability to support backend computations used by the app. Results are saved in HydroShare, a hydrologic information system that supports the sharing of hydrologic data, model and analysis tools. The TOPographic Kinematic APproximation and Integration (TOPKAPI) model served as the example for which we developed a complete hydrologic modeling service to demonstrate the approach. The final product is a complete modeling system accessible through the web to create input files, and run the TOPKAPI hydrologic model for a watershed of interest. We are investigating similar functionality for the preparation of input to Regional Hydro-Ecological Simulation System (RHESSys). Key Words: hydrologic modeling, web services, hydrologic information system, HydroShare, HydroDS, Tethys Platform

  20. Acting, predicting and intervening in a socio-hydrological world

    Science.gov (United States)

    Lane, S. N.

    2014-03-01

    This paper asks a simple question: if humans and their actions co-evolve with hydrological systems (Sivapalan et al., 2012), what is the role of hydrological scientists, who are also humans, within this system? To put it more directly, as traditionally there is a supposed separation of scientists and society, can we maintain this separation as socio-hydrologists studying a socio-hydrological world? This paper argues that we cannot, using four linked sections. The first section draws directly upon the concern of science-technology studies to make a case to the (socio-hydrological) community that we need to be sensitive to constructivist accounts of science in general and socio-hydrology in particular. I review three positions taken by such accounts and apply them to hydrological science, supported with specific examples: (a) the ways in which scientific activities frame socio-hydrological research, such that at least some of the knowledge that we obtain is constructed by precisely what we do; (b) the need to attend to how socio-hydrological knowledge is used in decision-making, as evidence suggests that hydrological knowledge does not flow simply from science into policy; and (c) the observation that those who do not normally label themselves as socio-hydrologists may actually have a profound knowledge of socio-hydrology. The second section provides an empirical basis for considering these three issues by detailing the history of the practice of roughness parameterisation, using parameters like Manning's n, in hydrological and hydraulic models for flood inundation mapping. This history sustains the third section that is a more general consideration of one type of socio-hydrological practice: predictive modelling. I show that as part of a socio-hydrological analysis, hydrological prediction needs to be thought through much more carefully: not only because hydrological prediction exists to help inform decisions that are made about water management; but also because

  1. Pathway analysis concepts for radiological impact assessment

    International Nuclear Information System (INIS)

    Moroney, J.R.

    1992-06-01

    The concepts underlying exposure pathways analysis are outlined with reference to the features of the two broad types of radionuclide transport models now in use - dynamic and steady-state - and the methods for constructing and developing them. By way of illustration, representative radiation doses are estimated for the four main exposure pathways likely to be involved in the land application of effluent water from Retention Pond 2 of Ranger Uranium Mines. These include: external irradiation by 226 Ra and natural uranium (Un at) in soil, ingestion of 226 Ra and Un at in food, inhalation of 222 Rn daughter products from 226 Rn in soil, and inhalation of 226 Ra and Un at in airborne dust resuspended from soil. Consideration has been given to local residents pursuing a traditional lifestyle on conclusion of the land application program. Because of the possible importance of the contribution from resuspended dust, currently available data are explored in refining the methodology for the pathway and developing a more appropriate model for it. 37 refs., 9 tabs., 6 figs

  2. Integration of Local Hydrology into Regional Hydrologic Simulation Model

    Science.gov (United States)

    Van Zee, R. J.; Lal, W. A.

    2002-05-01

    South Florida hydrology is dominated by the Central and South Florida (C&SF) Project that is managed to provide flood protection, water supply and environmental protection. A complex network of levees canals and structures provide these services to the individual drainage basins. The landscape varies widely across the C&SF system, with corresponding differences in the way water is managed within each basin. Agricultural areas are managed for optimal crop production. Urban areas maximize flood protection while maintaining minimum water levels to protect adjacent wetlands and local water supplies. "Natural" areas flood and dry out in response to the temporal distribution of rainfall. The evaluation of planning, regulation and operational issues require access to a simulation model that captures the effects of both regional and local hydrology. The Regional Simulation Model (RSM) uses a "pseudo-cell" approach to integrate local hydrology within the context of a regional hydrologic system. A 2-dimensional triangulated mesh is used to represent the regional surface and ground water systems and a 1-dimensional canal network is superimposed onto this mesh. The movement of water is simulated using a finite volume formulation with a diffusive wave approximation. Each cell in the triangulated mesh has a "pseudo-cell" counterpart, which represents the same area as the cell, but it is conceptualized such that it simulates the localized hydrologic conditions Protocols have been established to provide an interface between a cell and its pseudo-cell counterpart. . A number of pseudo-cell types have already been developed and tested in the simulation of Water Conservation Area 1 and several have been proposed to deal with specific local issues in the Southwest Florida Feasibility Study. This presentation will provide an overview of the overall RSM design, describe the relationship between cells and pseudo-cells, and illustrate how pseudo-cells are be used to simulate agriculture

  3. Assessment of morphological and hydrological parameters of Oyun ...

    African Journals Online (AJOL)

    The study involves evaluation of basin area, slopes, shape of the basin as morphological parameters and analysis of flow frequencies for flood and low flows, developing unit hydrograph and analysis of rainfall intensity distribution in the study area as hydrological parameters. The morphological analysis of the basin yielded ...

  4. Quantitative and qualitative synthesis of socio-hydrological research

    Science.gov (United States)

    Xu, L.; Gober, P.; Wheater, H. S.; Kajikawa, Y.

    2017-12-01

    The challenge of climate change adaptation has raised awareness of the feedbacks and interconnections in complex human-natural coupled water systems. This has reinforced the call for a socio-hydrological approach to better understand, and represent in models, the associated system dynamics. Such models can potentially provide the tools to link knowledge about complex water systems to decision-making and policy frameworks. Socio-hydrology, as the subfield of human-natural coupled systems analysis, has been dramatically developed in the past few years. The purpose of this study is to empirically examine work that has been framed under the umbrella of socio-hydrology, to provide insights into the participants and their disciplinary perspectives, and to draw conclusions about where the field is headed. In doing so, we used a combined quantitative and qualitative approach to synthesise current knowledge of socio-hydrology and to propose some promising future directions in this subfield of water sciences. The general statistics of the existing literature showed that socio-hydrological research has become an emerging topic and is drawing more concern and engagement of hydrologists. However, the participation of social scientists is inadequate and greater cross-disciplinary integration is desirable. Current concerns in this subfield of water research centre on two basic challenges: (1) the need to embrace the social dimensions of water-related risks, and (2) the importance of interactions and feedbacks in dynamic socio-hydrological systems. A third challenge identified here relates to the large-scale implications of 1) and 2) above, i.e. virtual water flows as a mechanism to track the human use of water at the global scale. Accordingly, we propose five potential directions with regard to socio-hydrological models, interdisciplinary collaboration and transdisciplinary studies, the science-policy interface, resilience in socio-hydrological systems, and data sharing for human

  5. A cross-study gene set enrichment analysis identifies critical pathways in endometriosis

    Directory of Open Access Journals (Sweden)

    Bai Chunyan

    2009-09-01

    Full Text Available Abstract Background Endometriosis is an enigmatic disease. Gene expression profiling of endometriosis has been used in several studies, but few studies went further to classify subtypes of endometriosis based on expression patterns and to identify possible pathways involved in endometriosis. Some of the observed pathways are more inconsistent between the studies, and these candidate pathways presumably only represent a fraction of the pathways involved in endometriosis. Methods We applied a standardised microarray preprocessing and gene set enrichment analysis to six independent studies, and demonstrated increased concordance between these gene datasets. Results We find 16 up-regulated and 19 down-regulated pathways common in ovarian endometriosis data sets, 22 up-regulated and one down-regulated pathway common in peritoneal endometriosis data sets. Among them, 12 up-regulated and 1 down-regulated were found consistent between ovarian and peritoneal endometriosis. The main canonical pathways identified are related to immunological and inflammatory disease. Early secretory phase has the most over-represented pathways in the three uterine cycle phases. There are no overlapping significant pathways between the dataset from human endometrial endothelial cells and the datasets from ovarian endometriosis which used whole tissues. Conclusion The study of complex diseases through pathway analysis is able to highlight genes weakly connected to the phenotype which may be difficult to detect by using classical univariate statistics. By standardised microarray preprocessing and GSEA, we have increased the concordance in identifying many biological mechanisms involved in endometriosis. The identified gene pathways will shed light on the understanding of endometriosis and promote the development of novel therapies.

  6. Regional frameworks applied to hydrology: can landscape-based frameworks capture the hydrologic variability?

    Science.gov (United States)

    R. McManamay; D. Orth; C. Dolloff; E. Frimpong

    2011-01-01

    Regional frameworks have been used extensively in recent years to aid in broad-scale management. Widely used landscape-based regional frameworks, such as hydrologic landscape regions (HLRs) and physiographic provinces, may provide predictive tools of hydrologic variability. However, hydrologic-based regional frameworks, created using only streamflow data, are also...

  7. Effect of curcumin on aged Drosophila melanogaster: a pathway prediction analysis.

    Science.gov (United States)

    Zhang, Zhi-guo; Niu, Xu-yan; Lu, Ai-ping; Xiao, Gary Guishan

    2015-02-01

    To re-analyze the data published in order to explore plausible biological pathways that can be used to explain the anti-aging effect of curcumin. Microarray data generated from other study aiming to investigate effect of curcumin on extending lifespan of Drosophila melanogaster were further used for pathway prediction analysis. The differentially expressed genes were identified by using GeneSpring GX with a criterion of 3.0-fold change. Two Cytoscape plugins including BisoGenet and molecular complex detection (MCODE) were used to establish the protein-protein interaction (PPI) network based upon differential genes in order to detect highly connected regions. The function annotation clustering tool of Database for Annotation, Visualization and Integrated Discovery (DAVID) was used for pathway analysis. A total of 87 genes expressed differentially in D. melanogaster melanogaster treated with curcumin were identified, among which 50 were up-regulated significantly and 37 were remarkably down-regulated in D. melanogaster melanogaster treated with curcumin. Based upon these differential genes, PPI network was constructed with 1,082 nodes and 2,412 edges. Five highly connected regions in PPI networks were detected by MCODE algorithm, suggesting anti-aging effect of curcumin may be underlined through five different pathways including Notch signaling pathway, basal transcription factors, cell cycle regulation, ribosome, Wnt signaling pathway, and p53 pathway. Genes and their associated pathways in D. melanogaster melanogaster treated with anti-aging agent curcumin were identified using PPI network and MCODE algorithm, suggesting that curcumin may be developed as an alternative therapeutic medicine for treating aging-associated diseases.

  8. AGU hydrology publication outlets

    Science.gov (United States)

    Freeze, R. Allan

    In recent months I have been approached on several occasions by members of the hydrology community who asked me which of the various AGU journals and publishing outlets would be most suitable for a particular paper or article that they have prepared.Water Resources Research (WRR) is the primary AGU outlet for research papers in hydrology. It is an interdisciplinary journal that integrates research in the social and natural sciences of water. The editors of WRR invite original contributions in the physical, chemical and biological sciences and also in the social and policy sciences, including economics, systems analysis, sociology, and law. The editor for the physical sciences side of the journal is Donald R. Nielson, LAWR Veihmeyer Hall, University of California Davis, Davis, CA 95616. The editor for the policy sciences side of the journal is Ronald G. Cummings, Department of Economics, University of New Mexico, Albuquerque, NM 87131

  9. Thermal-mechanical-hydrological-chemical responses in the single heater test at the ESF

    International Nuclear Information System (INIS)

    Lin, W.; Blair, S.; Buettner, M

    1997-01-01

    The Single Heater Test (SHT) is conducted in the Exploratory Studies Facility (ESF) to study the thermal-mechanical responses of the rock mass. A set of boreholes were drilled in the test region for conducting a scoping test of the coupled thermal-mechanical- hydrological-chemical (TMHC) processes. The holes for the TMHC tests include electrical resistivity tomography (ERT), neutron logging/temperature, hydrological, and optical multiple point borehole extensometers. A 4-kW heater was installed in the heater hole, and was energized on August 26, 1996. Some observed movements of the water around the heater are associated with a possible dry-out region near the heater. The water that has been moved is more dilute than the in situ ground water, except for the concentration of Ca. This indicates that fractures are the major water pathways, and the displaced water may have reached an equilibrium with carbonate minerals on the fracture surfaces. No mechanical-hydrological coupling has been observed. The tests are on-going, and more data will be collected and analyzed

  10. Stochastic Simulation and Forecast of Hydrologic Time Series Based on Probabilistic Chaos Expansion

    Science.gov (United States)

    Li, Z.; Ghaith, M.

    2017-12-01

    Hydrological processes are characterized by many complex features, such as nonlinearity, dynamics and uncertainty. How to quantify and address such complexities and uncertainties has been a challenging task for water engineers and managers for decades. To support robust uncertainty analysis, an innovative approach for the stochastic simulation and forecast of hydrologic time series is developed is this study. Probabilistic Chaos Expansions (PCEs) are established through probabilistic collocation to tackle uncertainties associated with the parameters of traditional hydrological models. The uncertainties are quantified in model outputs as Hermite polynomials with regard to standard normal random variables. Sequentially, multivariate analysis techniques are used to analyze the complex nonlinear relationships between meteorological inputs (e.g., temperature, precipitation, evapotranspiration, etc.) and the coefficients of the Hermite polynomials. With the established relationships between model inputs and PCE coefficients, forecasts of hydrologic time series can be generated and the uncertainties in the future time series can be further tackled. The proposed approach is demonstrated using a case study in China and is compared to a traditional stochastic simulation technique, the Markov-Chain Monte-Carlo (MCMC) method. Results show that the proposed approach can serve as a reliable proxy to complicated hydrological models. It can provide probabilistic forecasting in a more computationally efficient manner, compared to the traditional MCMC method. This work provides technical support for addressing uncertainties associated with hydrological modeling and for enhancing the reliability of hydrological modeling results. Applications of the developed approach can be extended to many other complicated geophysical and environmental modeling systems to support the associated uncertainty quantification and risk analysis.

  11. A Watershed Scale Life Cycle Assessment Framework for Hydrologic Design

    Science.gov (United States)

    Tavakol-Davani, H.; Tavakol-Davani, PhD, H.; Burian, S. J.

    2017-12-01

    Sustainable hydrologic design has received attention from researchers with different backgrounds, including hydrologists and sustainability experts, recently. On one hand, hydrologists have been analyzing ways to achieve hydrologic goals through implementation of recent environmentally-friendly approaches, e.g. Green Infrastructure (GI) - without quantifying the life cycle environmental impacts of the infrastructure through the ISO Life Cycle Assessment (LCA) method. On the other hand, sustainability experts have been applying the LCA to study the life cycle impacts of water infrastructure - without considering the important hydrologic aspects through hydrologic and hydraulic (H&H) analysis. In fact, defining proper system elements for a watershed scale urban water sustainability study requires both H&H and LCA specialties, which reveals the necessity of performing an integrated, interdisciplinary study. Therefore, the present study developed a watershed scale coupled H&H-LCA framework to bring the hydrology and sustainability expertise together to contribute moving the current wage definition of sustainable hydrologic design towards onto a globally standard concept. The proposed framework was employed to study GIs for an urban watershed in Toledo, OH. Lastly, uncertainties associated with the proposed method and parameters were analyzed through a robust Monte Carlo simulation using parallel processing. Results indicated the necessity of both hydrologic and LCA components in the design procedure in order to achieve sustainability.

  12. Student-Centered Modules to Support Active Learning in Hydrology: Development Experiences and Users' Perspectives

    Science.gov (United States)

    Tarboton, D. G.; Habib, E. H.; Deshotel, M.; Merck, M. F.; Lall, U.; Farnham, D. J.

    2016-12-01

    Traditional approaches to undergraduate hydrology and water resource education are textbook based, adopt unit processes and rely on idealized examples of specific applications, rather than examining the contextual relations in the processes and the dynamics connecting climate and ecosystems. The overarching goal of this project is to address the needed paradigm shift in undergraduate education of engineering hydrology and water resources education to reflect parallel advances in hydrologic research and technology, mainly in the areas of new observational settings, data and modeling resources and web-based technologies. This study presents efforts to develop a set of learning modules that are case-based, data and simulation driven and delivered via a web user interface. The modules are based on real-world case studies from three regional hydrologic settings: Coastal Louisiana, Utah Rocky Mountains and Florida Everglades. These three systems provide unique learning opportunities on topics such as: regional-scale budget analysis, hydrologic effects of human and natural changes, flashflood protection, climate-hydrology teleconnections and water resource management scenarios. The technical design and contents of the modules aim to support students' ability for transforming their learning outcomes and skills to hydrologic systems other than those used by the specific activity. To promote active learning, the modules take students through a set of highly engaging learning activities that are based on analysis of hydrologic data and model simulations. The modules include user support in the form of feedback and self-assessment mechanisms that are integrated within the online modules. Module effectiveness is assessed through an improvement-focused evaluation model using a mixed-method research approach guiding collection and analysis of evaluation data. Both qualitative and quantitative data are collected through student learning data, product analysis, and staff interviews

  13. Statistical analysis of hydrological response in urbanising catchments based on adaptive sampling using inter-amount times

    Science.gov (United States)

    ten Veldhuis, Marie-Claire; Schleiss, Marc

    2017-04-01

    Urban catchments are typically characterised by a more flashy nature of the hydrological response compared to natural catchments. Predicting flow changes associated with urbanisation is not straightforward, as they are influenced by interactions between impervious cover, basin size, drainage connectivity and stormwater management infrastructure. In this study, we present an alternative approach to statistical analysis of hydrological response variability and basin flashiness, based on the distribution of inter-amount times. We analyse inter-amount time distributions of high-resolution streamflow time series for 17 (semi-)urbanised basins in North Carolina, USA, ranging from 13 to 238 km2 in size. We show that in the inter-amount-time framework, sampling frequency is tuned to the local variability of the flow pattern, resulting in a different representation and weighting of high and low flow periods in the statistical distribution. This leads to important differences in the way the distribution quantiles, mean, coefficient of variation and skewness vary across scales and results in lower mean intermittency and improved scaling. Moreover, we show that inter-amount-time distributions can be used to detect regulation effects on flow patterns, identify critical sampling scales and characterise flashiness of hydrological response. The possibility to use both the classical approach and the inter-amount-time framework to identify minimum observable scales and analyse flow data opens up interesting areas for future research.

  14. Critical Radionuclide and Pathway Analysis for the Savannah River Site, 2016 Update

    Energy Technology Data Exchange (ETDEWEB)

    Jannik, Tim [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL); Hartman, Larry [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL)

    2016-09-08

    During the operational history of Savannah River Site, many different radionuclides have been released from site facilities. However, as shown in this analysis, only a relatively small number of the released radionuclides have been significant contributors to doses to the offsite public. This report is an update to the 2011 analysis, Critical Radionuclide and Pathway Analysis for the Savannah River Site. SRS-based Performance Assessments for E-Area, Saltstone, F-Tank Farm, H-Tank Farm, and a Comprehensive SRS Composite Analysis have been completed. The critical radionuclides and pathways identified in those extensive reports are also detailed and included in this analysis.

  15. From spatially variable streamflow to distributed hydrological models: Analysis of key modeling decisions

    Science.gov (United States)

    Fenicia, Fabrizio; Kavetski, Dmitri; Savenije, Hubert H. G.; Pfister, Laurent

    2016-02-01

    This paper explores the development and application of distributed hydrological models, focusing on the key decisions of how to discretize the landscape, which model structures to use in each landscape element, and how to link model parameters across multiple landscape elements. The case study considers the Attert catchment in Luxembourg—a 300 km2 mesoscale catchment with 10 nested subcatchments that exhibit clearly different streamflow dynamics. The research questions are investigated using conceptual models applied at hydrologic response unit (HRU) scales (1-4 HRUs) on 6 hourly time steps. Multiple model structures are hypothesized and implemented using the SUPERFLEX framework. Following calibration, space/time model transferability is tested using a split-sample approach, with evaluation criteria including streamflow prediction error metrics and hydrological signatures. Our results suggest that: (1) models using geology-based HRUs are more robust and capture the spatial variability of streamflow time series and signatures better than models using topography-based HRUs; this finding supports the hypothesis that, in the Attert, geology exerts a stronger control than topography on streamflow generation, (2) streamflow dynamics of different HRUs can be represented using distinct and remarkably simple model structures, which can be interpreted in terms of the perceived dominant hydrologic processes in each geology type, and (3) the same maximum root zone storage can be used across the three dominant geological units with no loss in model transferability; this finding suggests that the partitioning of water between streamflow and evaporation in the study area is largely independent of geology and can be used to improve model parsimony. The modeling methodology introduced in this study is general and can be used to advance our broader understanding and prediction of hydrological behavior, including the landscape characteristics that control hydrologic response, the

  16. Gridded Surface Subsurface Hydrologic Analysis Modeling for Analysis of Flood Design Features at the Picayune Strand Restoration Project

    Science.gov (United States)

    2016-08-01

    restore its predrainage hydrology and ecological function for beneficial effects on flora and fauna in the project area and surrounding public lands. The...partnership with South Florida Water Management District (SFWMD), is constructing these features. Engineering support is required for hydrologic and...simulation accuracy and related resource requirements. Spatial data products such as digital elevation models, surveyed channel cross sections, soil

  17. Water System Adaptation To Hydrological Changes: Module 9, Water System Resilience and Security under Hydrologic Variability and Uncertainty

    Science.gov (United States)

    This course will introduce students to the fundamental principles of water system adaptation to hydrological changes, with emphasis on data analysis and interpretation, technical planning, and computational modeling. Starting with real-world scenarios and adaptation needs, the co...

  18. Modeling Subsurface Hydrology in Floodplains

    Science.gov (United States)

    Evans, Cristina M.; Dritschel, David G.; Singer, Michael B.

    2018-03-01

    Soil-moisture patterns in floodplains are highly dynamic, owing to the complex relationships between soil properties, climatic conditions at the surface, and the position of the water table. Given this complexity, along with climate change scenarios in many regions, there is a need for a model to investigate the implications of different conditions on water availability to riparian vegetation. We present a model, HaughFlow, which is able to predict coupled water movement in the vadose and phreatic zones of hydraulically connected floodplains. Model output was calibrated and evaluated at six sites in Australia to identify key patterns in subsurface hydrology. This study identifies the importance of the capillary fringe in vadose zone hydrology due to its water storage capacity and creation of conductive pathways. Following peaks in water table elevation, water can be stored in the capillary fringe for up to months (depending on the soil properties). This water can provide a critical resource for vegetation that is unable to access the water table. When water table peaks coincide with heavy rainfall events, the capillary fringe can support saturation of the entire soil profile. HaughFlow is used to investigate the water availability to riparian vegetation, producing daily output of water content in the soil over decadal time periods within different depth ranges. These outputs can be summarized to support scientific investigations of plant-water relations, as well as in management applications.

  19. Hydrology of the coastal springs ground-water basin and adjacent parts of Pasco, Hernando, and Citrus Counties, Florida

    Science.gov (United States)

    Knochenmus, Lari A.; Yobbi, Dann K.

    2001-01-01

    The coastal springs in Pasco, Hernando, and Citrus Counties, Florida consist of three first-order magnitude springs and numerous smaller springs, which are points of substantial ground-water discharge from the Upper Floridan aquifer. Spring flow is proportional to the water-level altitude in the aquifer and is affected primarily by the magnitude and timing of rainfall. Ground-water levels in 206 Upper Floridan aquifer wells, and surface-water stage, flow, and specific conductance of water from springs at 10 gaging stations were measured to define the hydrologic variability (temporally and spatially) in the Coastal Springs Ground-Water Basin and adjacent parts of Pasco, Hernando, and Citrus Counties. Rainfall at 46 stations and ground-water withdrawals for three counties, were used to calculate water budgets, to evaluate long-term changes in hydrologic conditions, and to evaluate relations among the hydrologic components. Predictive equations to estimate daily spring flow were developed for eight gaging stations using regression techniques. Regression techniques included ordinary least squares and multiple linear regression techniques. The predictive equations indicate that ground-water levels in the Upper Floridan aquifer are directly related to spring flow. At tidally affected gaging stations, spring flow is inversely related to spring-pool altitude. The springs have similar seasonal flow patterns throughout the area. Water-budget analysis provided insight into the relative importance of the hydrologic components expected to influence spring flow. Four water budgets were constructed for small ground-water basins that form the Coastal Springs Ground-Water Basin. Rainfall averaged 55 inches per year and was the only source of inflow to the Basin. The pathways for outflow were evapotranspiration (34 inches per year), runoff by spring flow (8 inches per year), ground-water outflow from upward leakage (11 inches per year), and ground-water withdrawal (2 inches per year

  20. Adaptable Web Modules to Stimulate Active Learning in Engineering Hydrology using Data and Model Simulations of Three Regional Hydrologic Systems

    Science.gov (United States)

    Habib, E. H.; Tarboton, D. G.; Lall, U.; Bodin, M.; Rahill-Marier, B.; Chimmula, S.; Meselhe, E. A.; Ali, A.; Williams, D.; Ma, Y.

    2013-12-01

    server-based system. Open source web technologies and community-based tools are used to facilitate wide dissemination and adaptation by diverse, independent institutions. The new hydrologic learning modules are based on recent developments in hydrologic modeling, data, and resources. The modules are embedded in three regional-scale ecosystems, Coastal Louisiana, Florida Everglades, and Utah Great Salt Lake Basin. These sites provide a wealth of hydrologic concepts and scenarios that can be used in most water resource and hydrology curricula. The study develops several learning modules based on the three hydro-systems covering subjects such as: water-budget analysis, effects of human and natural changes, climate-hydrology teleconnections, and water-resource management scenarios. The new developments include an instructional interface to give critical guidance and support to the learner and an instructor's guide containing adaptation and implementation procedures to assist instructors in adopting and integrating the material into courses and provide a consistent experience. The design of the new hydrologic education developments will be transferable to independent institutions and adaptable both instructionally and technically through a server system capable of supporting additional developments by the educational community.

  1. Using stable isotope tracers to assess hydrological flow paths, residence times and landscape influences in a nested mesoscale catchment

    Directory of Open Access Journals (Sweden)

    P. Rodgers

    2005-01-01

    Full Text Available δ18O measurements in precipitation and stream waters were used to investigate hydrological flow paths and residence times at nested spatial scales in the mesoscale (233 km2 River Feugh catchment in the northeast of Scotland over the 2001-2002 hydrological year. Precipitation δ18O exhibited strong seasonal variation, which although significantly damped within the catchment, was reflected in stream water at six sampling sites. This allowed δ18O variations to be used to infer the relative influence of soil-derived storm flows with a seasonally variable isotopic signature, and groundwater of apparently more constant isotopic composition. Periodic regression analysis was then used to examine the sub-catchment difference using an exponential flow model to provide indicative estimates of mean stream water residence times, which varied between approximately 3 and 14 months. This showed that the effects of increasing scale on estimated mean stream water residence time was minimal beyond that of the smallest (ca. 1 km2 headwater catchment scale. Instead, the interaction of catchment soil cover and topography appeared to be the dominant controlling influence. Where sub-catchments had extensive peat coverage, responsive hydrological pathways produced seasonally variable δ18O signatures in runoff with short mean residence times (ca. 3 months. In contrast, areas dominated by steeper slopes, more freely draining soils and larger groundwater storage in shallow valley-bottom aquifers, deeper flow paths allow for more effective mixing and damping of δ18O indicating longer residence times (>12 months. These insights from δ18O measurements extend the hydrological understanding of the Feugh catchment gained from previous geochemical tracer studies, and demonstrate the utility of isotope tracers in investigating the interaction of hydrological processes and catchment characteristics at larger spatial scales.

  2. A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia

    Directory of Open Access Journals (Sweden)

    Jordi Leno-Colorado

    2017-07-01

    Full Text Available Ascertaining the molecular and physiological basis of domestication and breeding is an active area of research. Due to the current wide distribution of its wild ancestor, the wild boar, the pig (Sus scrofa is an excellent model to study these processes, which occurred independently in East Asia and Europe ca. 9000 yr ago. Analyzing genome variability patterns in terms of metabolic pathways is attractive since it considers the impact of interrelated functions of genes, in contrast to genome-wide scans that treat genes or genome windows in isolation. To that end, we studied 40 wild boars and 123 domestic pig genomes from Asia and Europe when metabolic pathway was the unit of analysis. We computed statistical significance for differentiation (Fst and linkage disequilibrium (nSL statistics at the pathway level. In terms of Fst, we found 21 and 12 pathways significantly differentiated at a q-value 10 significant pathways (in terms of Fst, comprising genes involved in the transduction of a large number of signals, like phospholipase PCLB1, which is expressed in the brain, or ITPR3, which has an important role in taste transduction. In terms of nSL, significant pathways were mainly related to reproductive performance (ovarian steroidogenesis, a similarly important target trait during domestication and modern animal breeding. Different levels of recombination cannot explain these results, since we found no correlation between Fst and recombination rate. However, we did find an increased ratio of deleterious mutations in domestic vs. wild populations, suggesting a relaxed functional constraint associated with the domestication and breeding processes. Purifying selection was, nevertheless, stronger in significantly differentiated pathways than in random pathways, mainly in Europe. We conclude that pathway analysis facilitates the biological interpretation of genome-wide studies. Notably, in the case of pig, behavior played an important role, among other

  3. A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia.

    Science.gov (United States)

    Leno-Colorado, Jordi; Hudson, Nick J; Reverter, Antonio; Pérez-Enciso, Miguel

    2017-07-05

    Ascertaining the molecular and physiological basis of domestication and breeding is an active area of research. Due to the current wide distribution of its wild ancestor, the wild boar, the pig ( Sus scrofa ) is an excellent model to study these processes, which occurred independently in East Asia and Europe ca. 9000 yr ago. Analyzing genome variability patterns in terms of metabolic pathways is attractive since it considers the impact of interrelated functions of genes, in contrast to genome-wide scans that treat genes or genome windows in isolation. To that end, we studied 40 wild boars and 123 domestic pig genomes from Asia and Europe when metabolic pathway was the unit of analysis. We computed statistical significance for differentiation (Fst) and linkage disequilibrium (nSL) statistics at the pathway level. In terms of Fst, we found 21 and 12 pathways significantly differentiated at a q -value 10 significant pathways (in terms of Fst), comprising genes involved in the transduction of a large number of signals, like phospholipase PCLB1, which is expressed in the brain, or ITPR3, which has an important role in taste transduction. In terms of nSL, significant pathways were mainly related to reproductive performance (ovarian steroidogenesis), a similarly important target trait during domestication and modern animal breeding. Different levels of recombination cannot explain these results, since we found no correlation between Fst and recombination rate. However, we did find an increased ratio of deleterious mutations in domestic vs. wild populations, suggesting a relaxed functional constraint associated with the domestication and breeding processes. Purifying selection was, nevertheless, stronger in significantly differentiated pathways than in random pathways, mainly in Europe. We conclude that pathway analysis facilitates the biological interpretation of genome-wide studies. Notably, in the case of pig, behavior played an important role, among other physiological

  4. Application of bivariate mapping for hydrological classification and analysis of temporal change and scale effects in Switzerland

    NARCIS (Netherlands)

    Speich, Matthias J.R.; Bernhard, Luzi; Teuling, Ryan; Zappa, Massimiliano

    2015-01-01

    Hydrological classification schemes are important tools for assessing the impacts of a changing climate on the hydrology of a region. In this paper, we present bivariate mapping as a simple means of classifying hydrological data for a quantitative and qualitative assessment of temporal change.

  5. Pathways of topological rank analysis (PoTRA): a novel method to detect pathways involved in hepatocellular carcinoma.

    Science.gov (United States)

    Li, Chaoxing; Liu, Li; Dinu, Valentin

    2018-01-01

    Complex diseases such as cancer are usually the result of a combination of environmental factors and one or several biological pathways consisting of sets of genes. Each biological pathway exerts its function by delivering signaling through the gene network. Theoretically, a pathway is supposed to have a robust topological structure under normal physiological conditions. However, the pathway's topological structure could be altered under some pathological condition. It is well known that a normal biological network includes a small number of well-connected hub nodes and a large number of nodes that are non-hubs. In addition, it is reported that the loss of connectivity is a common topological trait of cancer networks, which is an assumption of our method. Hence, from normal to cancer, the process of the network losing connectivity might be the process of disrupting the structure of the network, namely, the number of hub genes might be altered in cancer compared to that in normal or the distribution of topological ranks of genes might be altered. Based on this, we propose a new PageRank-based method called Pathways of Topological Rank Analysis (PoTRA) to detect pathways involved in cancer. We use PageRank to measure the relative topological ranks of genes in each biological pathway, then select hub genes for each pathway, and use Fisher's exact test to test if the number of hub genes in each pathway is altered from normal to cancer. Alternatively, if the distribution of topological ranks of gene in a pathway is altered between normal and cancer, this pathway might also be involved in cancer. Hence, we use the Kolmogorov-Smirnov test to detect pathways that have an altered distribution of topological ranks of genes between two phenotypes. We apply PoTRA to study hepatocellular carcinoma (HCC) and several subtypes of HCC. Very interestingly, we discover that all significant pathways in HCC are cancer-associated generally, while several significant pathways in subtypes

  6. A physically based catchment partitioning method for hydrological analysis

    Science.gov (United States)

    Menduni, Giovanni; Riboni, Vittoria

    2000-07-01

    We propose a partitioning method for the topographic surface, which is particularly suitable for hydrological distributed modelling and shallow-landslide distributed modelling. The model provides variable mesh size and appears to be a natural evolution of contour-based digital terrain models. The proposed method allows the drainage network to be derived from the contour lines. The single channels are calculated via a search for the steepest downslope lines. Then, for each network node, the contributing area is determined by means of a search for both steepest upslope and downslope lines. This leads to the basin being partitioned into physically based finite elements delimited by irregular polygons. In particular, the distributed computation of local geomorphological parameters (i.e. aspect, average slope and elevation, main stream length, concentration time, etc.) can be performed easily for each single element. The contributing area system, together with the information on the distribution of geomorphological parameters provide a useful tool for distributed hydrological modelling and simulation of environmental processes such as erosion, sediment transport and shallow landslides.

  7. Endocrine-disrupting Chemicals: Review of Toxicological Mechanisms Using Molecular Pathway Analysis

    Science.gov (United States)

    Yang, Oneyeol; Kim, Hye Lim; Weon, Jong-Il; Seo, Young Rok

    2015-01-01

    Endocrine disruptors are known to cause harmful effects to human through various exposure routes. These chemicals mainly appear to interfere with the endocrine or hormone systems. As importantly, numerous studies have demonstrated that the accumulation of endocrine disruptors can induce fatal disorders including obesity and cancer. Using diverse biological tools, the potential molecular mechanisms related with these diseases by exposure of endocrine disruptors. Recently, pathway analysis, a bioinformatics tool, is being widely used to predict the potential mechanism or biological network of certain chemicals. In this review, we initially summarize the major molecular mechanisms involved in the induction of the above mentioned diseases by endocrine disruptors. Additionally, we provide the potential markers and signaling mechanisms discovered via pathway analysis under exposure to representative endocrine disruptors, bisphenol, diethylhexylphthalate, and nonylphenol. The review emphasizes the importance of pathway analysis using bioinformatics to finding the specific mechanisms of toxic chemicals, including endocrine disruptors. PMID:25853100

  8. Dynamics of meteorological and hydrological droughts in the Neman river basin

    International Nuclear Information System (INIS)

    Rimkus, Egidijus; Stonevičius, Edvinas; Kažys, Justas; Valiuškevičius, Gintaras; Korneev, Vladimir; Pakhomau, Aliaksandr

    2013-01-01

    The analysis of drought dynamics in the Neman river basin allows an assessment of extreme regional climate changes. Meteorological and hydrological warm period droughts were analyzed in this study. Meteorological droughts were identified using the standardized precipitation index, and hydrological droughts using the streamflow drought index. The whole river basin was analyzed over the period from 1961 to 2010. Precipitation data from Vilnius meteorological station (from 1887) and discharge data from Smalininkai (Neman) hydrological station (from 1811) were used for an evaluation of meteorological and hydrological drought recurrence over a long-term period. It was found that the total area dryness has decreased over the last 50 years. A statistically significant increase in standardized precipitation index values was observed in some river sub-basins. An analysis of drought recurrence dynamics showed that there was no indication that the number of dangerous drought was increased. It was determined that the standardized precipitation index cannot successfully identify the hydrological summer droughts in an area where the spring snowmelt forms a large part of the annual flow. In particular, the weak relationship between the indices was recorded in the first half of the summer, when a large part of the river runoff depends on accumulated water during the spring thaw. (letter)

  9. Nested Tracer Studies In Catchment Hydrology: Towards A Multiscale Understanding of Runoff Generation and Catchment Funtioning

    Science.gov (United States)

    Soulsby, C.; Rodgers, P.; Malcolm, I. A.; Dunn, S.

    Geochemical and isotopic tracers have been shown to have widespread utility in catch- ment hydrology in terms of identifying hydrological source areas and characterising residence time distributions. In many cases application of tracer techniques has pro- vided insights into catchment functioning that could not be obtained from hydromet- ric and/or modelling studies alone. This paper will show how the use of tracers has contributed to an evolving perceptual model of hydrological pathways and runoff gen- eration processes in catchments in the Scottish highlands. In particular the paper will focus on the different insights that are gained at three different scales of analysis; (a) nested sub-catchments within a mesoscale (ca. 200 square kilometers) experimen- tal catchment; (b) hillslope-riparian interactions and (c) stream bed fluxes. Nested hydrometric and hydrochemical monitoring within the mesoscale Feugh catchment identified three main hydrological response units: (i) plateau peatlands which gener- ated saturation overland flow in the catchment headwaters, (ii) steep valley hillslopes which drain from the plateaux into (iii) alluvial and drift aquifers in the valley bottoms. End Member Mixing Analysis (EMMA) in 8 nested sub-catchments indicated that that stream water tracer concentrations can be modelled in terms of 2 dominant runoff pro- cesses; overland flow from the peat and groundwater from the drift aquifers. Ground- water contributions generally increased with catchment size, though this was moder- ated by the characteristics of individual sub-basins, with drift cover being particularly important. Hillslope riparian interactions were also examined using tracers, hydromet- ric data and a semi-distributed hydrological model. This revealed that in the glaciated, drift covered terrain of the Scottish highlands, extensive valley bottom aquifers effec- tively de-couple hillslope waters from the river channel. Thus, riparian groundwater appears to significantly

  10. Life Cycle Greenhouse Gas Analysis of Multiple Vehicle Fuel Pathways in China

    Directory of Open Access Journals (Sweden)

    Tianduo Peng

    2017-11-01

    Full Text Available The Tsinghua University Life Cycle Analysis Model (TLCAM is applied to calculate the life cycle fossil energy consumption and greenhouse gas (GHG emissions for more than 20 vehicle fuel pathways in China. In addition to conventional gasoline and diesel, these include coal- and gas-based vehicle fuels, and electric vehicle (EV pathways. The results indicate the following. (1 China’s current dependence on coal and relative low-efficiency processes limits the potential for most alternative fuel pathways to decrease energy consumption and emissions; (2 Future low-carbon electricity pathways offer more obvious advantages, with coal-based pathways needing to adopt carbon dioxide capture and storage technology to compete; (3 A well-to-wheels analysis of the fossil energy consumption of vehicles fueled by compressed natural gas and liquefied natural gas (LNG showed that they are comparable to conventional gasoline vehicles. However, importing rather than domestically producing LNG for vehicle use can decrease domestic GHG emissions by 35% and 31% compared with those of conventional gasoline and diesel vehicles, respectively; (4 The manufacturing and recovery of battery and vehicle in the EV analysis has significant impact on the overall ability of EVs to decrease fossil energy consumption and GHG emissions from ICEVs.

  11. Arid Zone Hydrology

    Science.gov (United States)

    Arid zone hydrology encompasses a wide range of topics and hydro-meteorological and ecological characteristics. Although arid and semi-arid watersheds perform the same functions as those in humid environments, their hydrology and sediment transport characteristics cannot be readily predicted by inf...

  12. Screening key candidate genes and pathways involved in insulinoma by microarray analysis.

    Science.gov (United States)

    Zhou, Wuhua; Gong, Li; Li, Xuefeng; Wan, Yunyan; Wang, Xiangfei; Li, Huili; Jiang, Bin

    2018-06-01

    Insulinoma is a rare type tumor and its genetic features remain largely unknown. This study aimed to search for potential key genes and relevant enriched pathways of insulinoma.The gene expression data from GSE73338 were downloaded from Gene Expression Omnibus database. Differentially expressed genes (DEGs) were identified between insulinoma tissues and normal pancreas tissues, followed by pathway enrichment analysis, protein-protein interaction (PPI) network construction, and module analysis. The expressions of candidate key genes were validated by quantitative real-time polymerase chain reaction (RT-PCR) in insulinoma tissues.A total of 1632 DEGs were obtained, including 1117 upregulated genes and 514 downregulated genes. Pathway enrichment results showed that upregulated DEGs were significantly implicated in insulin secretion, and downregulated DEGs were mainly enriched in pancreatic secretion. PPI network analysis revealed 7 hub genes with degrees more than 10, including GCG (glucagon), GCGR (glucagon receptor), PLCB1 (phospholipase C, beta 1), CASR (calcium sensing receptor), F2R (coagulation factor II thrombin receptor), GRM1 (glutamate metabotropic receptor 1), and GRM5 (glutamate metabotropic receptor 5). DEGs involved in the significant modules were enriched in calcium signaling pathway, protein ubiquitination, and platelet degranulation. Quantitative RT-PCR data confirmed that the expression trends of these hub genes were similar to the results of bioinformatic analysis.The present study demonstrated that candidate DEGs and enriched pathways were the potential critical molecule events involved in the development of insulinoma, and these findings were useful for better understanding of insulinoma genesis.

  13. Scaling Hydrologic Processes in Boreal Forest Stands: New Eco-hydrological Perspectives or Deja vu?

    Science.gov (United States)

    Silins, U.; Lieffers, V. J.; Landhausser, S. M.; Mendoza, C. A.; Devito, K. J.; Petrone, R. M.; Gan, T. Y.

    2006-12-01

    The leaf area of forest canopies is both main attribute of stands controlling water balance through transpiration and interception, and "engine" driving stand growth, stand dynamics, and forest succession. While transpiration and interception dynamics are classic themes in forest hydrology, we present results from our eco-hydrological research on boreal trees to highlight how more recent eco-physiological insights into species specific controls over water use and leaf area such as hydraulic architecture, cavitation, sapwood-leaf area relationships, and root system controls over water uptake are providing new insights into integrated atmospheric-autecological controls over these hydrologic processes. These results are discussed in the context of newer eco-hydrological frameworks which may serve to aid in exploring how forest disturbance and subsequent trajectories of hydrologic recovery are likely to affect both forest growth dynamics and hydrology of forested landscapes in response to forest management, severe forest pest epidemics such as the Mountain Pine Beetle epidemic in Western Canada, and climate change.

  14. airGRteaching: an R-package designed for teaching hydrology with lumped hydrological models

    Science.gov (United States)

    Thirel, Guillaume; Delaigue, Olivier; Coron, Laurent; Andréassian, Vazken; Brigode, Pierre

    2017-04-01

    discharges, which are updated immediately (a calibration only needs a couple of seconds or less, a simulation is almost immediate). In addition, time series of internal variables, live-visualisation of internal variables evolution and performance statistics are provided. This interface allows for hands-on exercises that can include for instance the analysis by students of: - The effects of each parameter and model components on simulated discharge - The effects of objective functions based on high flows- or low flows-focused criteria on simulated discharge - The seasonality of the model components. References Winston Chang, Joe Cheng, JJ Allaire, Yihui Xie and Jonathan McPherson (2016). shiny: Web Application Framework for R. R package version 0.13.2. https://CRAN.R-project.org/package=shiny Coron L., Thirel G., Perrin C., Delaigue O., Andréassian V., airGR: a suite of lumped hydrological models in an R-package, Environmental Modelling and software, 2017, submitted. Coron, L., Perrin, C. and Michel, C. (2016). airGR: Suite of GR hydrological models for precipitation-runoff modelling. R package version 1.0.3. https://webgr.irstea.fr/airGR/?lang=en. Olivier Delaigue and Laurent Coron (2016). airGRteaching: Tools to simplify the use of the airGR hydrological package by students. R package version 0.0.1. https://webgr.irstea.fr/airGR/?lang=en R Core Team (2016). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

  15. Pathway Distiller - multisource biological pathway consolidation.

    Science.gov (United States)

    Doderer, Mark S; Anguiano, Zachry; Suresh, Uthra; Dashnamoorthy, Ravi; Bishop, Alexander J R; Chen, Yidong

    2012-01-01

    One method to understand and evaluate an experiment that produces a large set of genes, such as a gene expression microarray analysis, is to identify overrepresentation or enrichment for biological pathways. Because pathways are able to functionally describe the set of genes, much effort has been made to collect curated biological pathways into publicly accessible databases. When combining disparate databases, highly related or redundant pathways exist, making their consolidation into pathway concepts essential. This will facilitate unbiased, comprehensive yet streamlined analysis of experiments that result in large gene sets. After gene set enrichment finds representative pathways for large gene sets, pathways are consolidated into representative pathway concepts. Three complementary, but different methods of pathway consolidation are explored. Enrichment Consolidation combines the set of the pathways enriched for the signature gene list through iterative combining of enriched pathways with other pathways with similar signature gene sets; Weighted Consolidation utilizes a Protein-Protein Interaction network based gene-weighting approach that finds clusters of both enriched and non-enriched pathways limited to the experiments' resultant gene list; and finally the de novo Consolidation method uses several measurements of pathway similarity, that finds static pathway clusters independent of any given experiment. We demonstrate that the three consolidation methods provide unified yet different functional insights of a resultant gene set derived from a genome-wide profiling experiment. Results from the methods are presented, demonstrating their applications in biological studies and comparing with a pathway web-based framework that also combines several pathway databases. Additionally a web-based consolidation framework that encompasses all three methods discussed in this paper, Pathway Distiller (http://cbbiweb.uthscsa.edu/PathwayDistiller), is established to allow

  16. An improved method for analysis of In-EDTA, I- and Br- used as active tracers in hydrological studies

    International Nuclear Information System (INIS)

    Stanescu, S.P.; Spiridon, S.

    1992-01-01

    Neutron activation analysis combined with chemical preconcentration of the elements in water samples can give a high sensitivity in the determination of concentrations for In-EDTA, I - and Br - used as active tracers in hydrological studies. The authors have developed an improved method of analysis which is sensitive, selective and applicable to a wide range of underground and surface water samples including those having a high concentration of manganese ions. (author) 6 refs.; 2 figs.; 1 tab

  17. Morphological and hydrological characteristics of the Serbian border zone towards Bulgaria

    Directory of Open Access Journals (Sweden)

    Đurović Predrag

    2013-01-01

    Full Text Available Morphological and hydrological analyses of the characteristics of the Serbian border zone towards Bulgaria were performed. The morphological analysis included the mountain (Stara Planina, Tupižnica, Svrljiške Planine, Suva Planina and Vidlič, structural basin (Zaječar, Knjaževac, Svrljig and Bela Palanka and valley (Veliki Timok, Beli Timok, Visočica, Dragovištica parts. Within the hydrological analysis, the areas with the highest and lowest annual amount of precipitation were identified, as well as the hottest and coldest areas. The change of river basins runoff was analysed, as well as the distribution of waters throughout the year in the studied area. The most important elements of the water balance were shown and the hydrological characteristics of the karst terrain were analysed.

  18. Operational aspects of asynchronous filtering for hydrological forecasting

    Science.gov (United States)

    Rakovec, O.; Weerts, A. H.; Sumihar, J.; Uijlenhoet, R.

    2015-03-01

    This study investigates the suitability of the Asynchronous Ensemble Kalman Filter (AEnKF) and a partitioned updating scheme for hydrological forecasting. The AEnKF requires forward integration of the model for the analysis and enables assimilation of current and past observations simultaneously at a single analysis step. The results of discharge assimilation into a grid-based hydrological model for the Upper Ourthe catchment in the Belgian Ardennes show that including past predictions and observations in the data assimilation method improves the model forecasts. Additionally, we show that elimination of the strongly non-linear relation between the soil moisture storage and assimilated discharge observations from the model update becomes beneficial for improved operational forecasting, which is evaluated using several validation measures.

  19. Isotope hydrology

    International Nuclear Information System (INIS)

    Drost, W.

    1978-01-01

    The International Symposium on Isotope Hydrology was jointly organized by the IAEA and UNESCO, in co-operation with the National Committee of the Federal Republic of Germany for the International Hydrological Programme (IHP) and the Gesellschaft fuer Strahlen- und Umweltforschung mbH (GSF). Upon the invitation of the Federal Republic of Germany the Symposium was held from 19-23 June 1978 in Neuherberg on the GSF campus. The Symposium was officially opened by Mr. S. Eklund, Director General of the IAEA. The symposium - the fifth meeting held on isotope hydrology - was attended by over 160 participants from 44 countries and four international organizations and by about 30 observers from the Federal Republic of Germany. Due to the absence of scientists from the USSR five papers were cancelled and therefore only 46 papers of the original programme were presented in ten sessions

  20. Predicting hydrological response to forest changes by simple statistical models: the selection of the best indicator of forest changes with a hydrological perspective

    Science.gov (United States)

    Ning, D.; Zhang, M.; Ren, S.; Hou, Y.; Yu, L.; Meng, Z.

    2017-01-01

    Forest plays an important role in hydrological cycle, and forest changes will inevitably affect runoff across multiple spatial scales. The selection of a suitable indicator for forest changes is essential for predicting forest-related hydrological response. This study used the Meijiang River, one of the headwaters of the Poyang Lake as an example to identify the best indicator of forest changes for predicting forest change-induced hydrological responses. Correlation analysis was conducted first to detect the relationships between monthly runoff and its predictive variables including antecedent monthly precipitation and indicators for forest changes (forest coverage, vegetation indices including EVI, NDVI, and NDWI), and by use of the identified predictive variables that were most correlated with monthly runoff, multiple linear regression models were then developed. The model with best performance identified in this study included two independent variables -antecedent monthly precipitation and NDWI. It indicates that NDWI is the best indicator of forest change in hydrological prediction while forest coverage, the most commonly used indicator of forest change is insignificantly related to monthly runoff. This highlights the use of vegetation index such as NDWI to indicate forest changes in hydrological studies. This study will provide us with an efficient way to quantify the hydrological impact of large-scale forest changes in the Meijiang River watershed, which is crucial for downstream water resource management and ecological protection in the Poyang Lake basin.

  1. Water System Adaptation to Hydrological Changes: Module 10, Basic Principles of Incorporating Adaptation Science into Hydrologic Planning and Design

    Science.gov (United States)

    This course will introduce students to the fundamental principles of water system adaptation to hydrological changes, with emphasis on data analysis and interpretation, technical planning, and computational modeling. Starting with real-world scenarios and adaptation needs, the co...

  2. An experimental seasonal hydrological forecasting system over the Yellow River basin - Part 1: Understanding the role of initial hydrological conditions

    Science.gov (United States)

    Yuan, Xing; Ma, Feng; Wang, Linying; Zheng, Ziyan; Ma, Zhuguo; Ye, Aizhong; Peng, Shaoming

    2016-06-01

    drops to 1 month during the rainy season. Based on an additional ESP-type simulation without the initialization of the river routing model, it is found that the initial surface water state is the main source of streamflow predictability during the first month, beyond which other sources of terrestrial memory become more important. During the dry/wet periods, the dominance of ICs on the streamflow predictability can be extended by a month even in the rainy season, suggesting the usefulness of the ESP forecasting approach after the onset of the hydrological extreme events. Similar results are found for the soil moisture predictability but with longer influences from ICs. And the simulations indicate that the soil moisture memory is longer over the middle reaches than those over the upper and lower reaches of the Yellow River. The naturalized hydrological predictability analysis in this study will provide a guideline for establishing an operational hydrological forecasting system as well as for managing the risks of hydrological extremes over the Yellow River basin.

  3. GIS environmental information analysis of the Darro River basin as the key for the management and hydrological forest restoration.

    Science.gov (United States)

    Fernandez, Paz; Delgado, Expectación; Lopez-Alonso, Mónica; Poyatos, José Manuel

    2018-02-01

    This article presents analyses of soil and environmental information for the Darro River basin (Granada-Spain) preliminary to its hydrological and forestry restoration. These analyses were carried out using a geographical information system (GIS) and employing a new procedure that adapts hydrological forest-restoration methods. The complete analysis encompasses morphological conditions, soil and climate characteristics as well as vegetation and land use. The study investigates soil erosion in the basin by using Universal Soil Loss Equation (USLE) and by mapping erosion fragility units. The results are presented in a set of maps and their analysis, providing the starting point for river basin management and the hydrological and forestry-restoration project that was approved at the end of 2015. The presence of soft substrates (e.g. gravel and sand) indicates that the area is susceptible to erosion, particularly the areas that are dominated by human activity and have little soil protection. Finally, land use and vegetation cover were identified as key factors in the soil erosion in the basin. According to the results, river authorities have included several measures in the restoration project aimed at reducing the erosion and helping to recover the environmental value of this river basin and to include it in recreation possibilities for the community of Granada. The presented analytical approach, designed by the authors, would be useful as a tool for environmental restoration in other small Mediterranean river basins. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Technical note: Design flood under hydrological uncertainty

    Science.gov (United States)

    Botto, Anna; Ganora, Daniele; Claps, Pierluigi; Laio, Francesco

    2017-07-01

    Planning and verification of hydraulic infrastructures require a design estimate of hydrologic variables, usually provided by frequency analysis, and neglecting hydrologic uncertainty. However, when hydrologic uncertainty is accounted for, the design flood value for a specific return period is no longer a unique value, but is represented by a distribution of values. As a consequence, the design flood is no longer univocally defined, making the design process undetermined. The Uncertainty Compliant Design Flood Estimation (UNCODE) procedure is a novel approach that, starting from a range of possible design flood estimates obtained in uncertain conditions, converges to a single design value. This is obtained through a cost-benefit criterion with additional constraints that is numerically solved in a simulation framework. This paper contributes to promoting a practical use of the UNCODE procedure without resorting to numerical computation. A modified procedure is proposed by using a correction coefficient that modifies the standard (i.e., uncertainty-free) design value on the basis of sample length and return period only. The procedure is robust and parsimonious, as it does not require additional parameters with respect to the traditional uncertainty-free analysis. Simple equations to compute the correction term are provided for a number of probability distributions commonly used to represent the flood frequency curve. The UNCODE procedure, when coupled with this simple correction factor, provides a robust way to manage the hydrologic uncertainty and to go beyond the use of traditional safety factors. With all the other parameters being equal, an increase in the sample length reduces the correction factor, and thus the construction costs, while still keeping the same safety level.

  5. Ice sheet hydrology - a review

    International Nuclear Information System (INIS)

    Jansson, Peter; Naeslund, Jens-Ove; Rodhe, Lars

    2007-03-01

    This report summarizes the theoretical knowledge on water flow in and beneath glaciers and ice sheets and how these theories are applied in models to simulate the hydrology of ice sheets. The purpose is to present the state of knowledge and, perhaps more importantly, identify the gaps in our understanding of ice sheet hydrology. Many general concepts in hydrology and hydraulics are applicable to water flow in glaciers. However, the unique situation of having the liquid phase flowing in conduits of the solid phase of the same material, water, is not a commonly occurring phenomena. This situation means that the heat exchange between the phases and the resulting phase changes also have to be accounted for in the analysis. The fact that the solidus in the pressure-temperature dependent phase diagram of water has a negative slope provides further complications. Ice can thus melt or freeze from both temperature and pressure variations or variations in both. In order to provide details of the current understanding of water flow in conjunction with deforming ice and to provide understanding for the development of ideas and models, emphasis has been put on the mathematical treatments, which are reproduced in detail. Qualitative results corroborating theory or, perhaps more often, questioning the simplifications made in theory, are also given. The overarching problem with our knowledge of glacier hydrology is the gap between the local theories of processes and the general flow of water in glaciers and ice sheets. Water is often channelized in non-stationary conduits through the ice, features which due to their minute size relative to the size of glaciers and ice sheets are difficult to incorporate in spatially larger models. Since the dynamic response of ice sheets to global warming is becoming a key issue in, e.g. sea-level change studies, the problems of the coupling between the hydrology of an ice sheet and its dynamics is steadily gaining interest. New work is emerging

  6. Ice sheet hydrology - a review

    Energy Technology Data Exchange (ETDEWEB)

    Jansson, Peter; Naeslund, Jens-Ove [Dept. of Physical Geography and Quaternary Geology, Stockholm Univ., Stockholm (Sweden); Rodhe, Lars [Geological Survey of Sweden, Uppsala (Sweden)

    2007-03-15

    This report summarizes the theoretical knowledge on water flow in and beneath glaciers and ice sheets and how these theories are applied in models to simulate the hydrology of ice sheets. The purpose is to present the state of knowledge and, perhaps more importantly, identify the gaps in our understanding of ice sheet hydrology. Many general concepts in hydrology and hydraulics are applicable to water flow in glaciers. However, the unique situation of having the liquid phase flowing in conduits of the solid phase of the same material, water, is not a commonly occurring phenomena. This situation means that the heat exchange between the phases and the resulting phase changes also have to be accounted for in the analysis. The fact that the solidus in the pressure-temperature dependent phase diagram of water has a negative slope provides further complications. Ice can thus melt or freeze from both temperature and pressure variations or variations in both. In order to provide details of the current understanding of water flow in conjunction with deforming ice and to provide understanding for the development of ideas and models, emphasis has been put on the mathematical treatments, which are reproduced in detail. Qualitative results corroborating theory or, perhaps more often, questioning the simplifications made in theory, are also given. The overarching problem with our knowledge of glacier hydrology is the gap between the local theories of processes and the general flow of water in glaciers and ice sheets. Water is often channelized in non-stationary conduits through the ice, features which due to their minute size relative to the size of glaciers and ice sheets are difficult to incorporate in spatially larger models. Since the dynamic response of ice sheets to global warming is becoming a key issue in, e.g. sea-level change studies, the problems of the coupling between the hydrology of an ice sheet and its dynamics is steadily gaining interest. New work is emerging

  7. Hydrology for a Changing World

    Science.gov (United States)

    Hirsch, R. M.

    2017-12-01

    To support critical decisions related to water quantity, quality, and hazard mitigation, surface water hydrologists and water resources engineers have historically invoked the assumption that hydrologic systems are stationary; variables such as discharge or solute fluxes were assumed to have a mean, a variance, and other statistical properties that did not change over time. Today, the drivers of non-stationarity such as urbanization, groundwater depletion, engineered land-drainage systems, application of nutrients at the land surface, new farming technologies, and changes in greenhouse gas forcing of the global atmosphere have perturbed hydrologic systems enough so that this assumption must be challenged. Understanding of the non-stationarity in hydrologic systems is important for at least two major reasons: (1) Society needs insights on the hydrologic conditions of the future as a basis for planning, operating, and regulating water resources in the future. Water resources engineers cannot depend solely on records of the past to design and operate in the future. However, simply substituting model projections for historic records, without evaluation of the ability of those models to produce realistic projections, is not acceptable. (2) Non-stationarity provides a framework to identify emerging water resource issues and evaluate our society's success in achieving its environmental goals. The study of hydrologic change is our greatest challenge. We must learn how best to blend our knowledge of the past with our projections of the future. In this non-stationary world, observing systems and networks become even more critically important and our models must be tested using historical records to ensure that they produce useful projections of our future. In the words of Ralph Keeling, "The only way to figure out what is happening to our planet is to measure it, and this means tracking the changes decade after decade, and poring over the records." Walter Langbein knew the

  8. Hands-On Hydrology

    Science.gov (United States)

    Mathews, Catherine E.; Monroe, Louise Nelson

    2004-01-01

    A professional school and university collaboration enables elementary students and their teachers to explore hydrology concepts and realize the beneficial functions of wetlands. Hands-on experiences involve young students in determining water quality at field sites after laying the groundwork with activities related to the hydrologic cycle,…

  9. Quantitative historical hydrology in Europe

    Czech Academy of Sciences Publication Activity Database

    Benito, J.; Brázdil, Rudolf; Herget, J.; Machado, M. J.

    2015-01-01

    Roč. 19, č. 8 (2015), s. 3517-3539 ISSN 1027-5606 R&D Projects: GA ČR GA13-19831S Institutional support: RVO:67179843 Keywords : flood frequency-analysis * ne iberian peninsula * reconstructing peak discharges * extreme floods * climate-change * ardeche river * catastrophic floods * documentary sources * paleoflood record * spanish rivers Subject RIV: DA - Hydrology ; Limnology Impact factor: 3.990, year: 2015

  10. Nuclear well logging in hydrology

    International Nuclear Information System (INIS)

    1971-01-01

    hydrologists trained in the techniques of borehole logging and log analysis. In their report to the IHD Coordinating Council, the fourth session of the Working Group proposed that a technical document be prepared to summarize the status of nuclear logging in hydrology. This report is intended to fulfil that proposal and to meet the need, insofar as is possible at present (1970), for coordinated information on the subject

  11. Development and comparison of Bayesian modularization method in uncertainty assessment of hydrological models

    Science.gov (United States)

    Li, L.; Xu, C.-Y.; Engeland, K.

    2012-04-01

    With respect to model calibration, parameter estimation and analysis of uncertainty sources, different approaches have been used in hydrological models. Bayesian method is one of the most widely used methods for uncertainty assessment of hydrological models, which incorporates different sources of information into a single analysis through Bayesian theorem. However, none of these applications can well treat the uncertainty in extreme flows of hydrological models' simulations. This study proposes a Bayesian modularization method approach in uncertainty assessment of conceptual hydrological models by considering the extreme flows. It includes a comprehensive comparison and evaluation of uncertainty assessments by a new Bayesian modularization method approach and traditional Bayesian models using the Metropolis Hasting (MH) algorithm with the daily hydrological model WASMOD. Three likelihood functions are used in combination with traditional Bayesian: the AR (1) plus Normal and time period independent model (Model 1), the AR (1) plus Normal and time period dependent model (Model 2) and the AR (1) plus multi-normal model (Model 3). The results reveal that (1) the simulations derived from Bayesian modularization method are more accurate with the highest Nash-Sutcliffe efficiency value, and (2) the Bayesian modularization method performs best in uncertainty estimates of entire flows and in terms of the application and computational efficiency. The study thus introduces a new approach for reducing the extreme flow's effect on the discharge uncertainty assessment of hydrological models via Bayesian. Keywords: extreme flow, uncertainty assessment, Bayesian modularization, hydrological model, WASMOD

  12. HESS Opinions "The art of hydrology"

    NARCIS (Netherlands)

    Savenije, H.H.G.

    2008-01-01

    Hydrological modelling is the same as developing and encoding a hydrological theory. A hydrological model is not a tool but a hypothesis. The whole discussion about the inadequacy of hydrological models we have witnessed of late, is related to the wrong concept of what a model is. Good models don't

  13. Geospatial technology applications in forest hydrology

    Science.gov (United States)

    S.S. Panda; E. Masson; S. Sen; H.W. Kim; Devendra Amatya

    2016-01-01

    Two separate disciplines, hydrology and forestry, together constitute forest hydrology. It is obvious that forestry and forest hydrology disciplines are spatial entities. Forestry is the science that seeks to understand the nature of forests throygh their life cycle and interactions with the surrounding environment. Forest hydrology includes forest soil water, streams...

  14. Integrated bioinformatics analysis reveals key candidate genes and pathways in breast cancer.

    Science.gov (United States)

    Wang, Yuzhi; Zhang, Yi; Huang, Qian; Li, Chengwen

    2018-04-19

    Breast cancer (BC) is the leading malignancy in women worldwide, yet relatively little is known about the genes and signaling pathways involved in BC tumorigenesis and progression. The present study aimed to elucidate potential key candidate genes and pathways in BC. Five gene expression profile data sets (GSE22035, GSE3744, GSE5764, GSE21422 and GSE26910) were downloaded from the Gene Expression Omnibus (GEO) database, which included data from 113 tumorous and 38 adjacent non‑tumorous tissue samples. Differentially expressed genes (DEGs) were identified using t‑tests in the limma R package. These DEGs were subsequently investigated by pathway enrichment analysis and a protein‑protein interaction (PPI) network was constructed. The most significant module from the PPI network was selected for pathway enrichment analysis. In total, 227 DEGs were identified, of which 82 were upregulated and 145 were downregulated. Pathway enrichment analysis results revealed that the upregulated DEGs were mainly enriched in 'cell division', the 'proteinaceous extracellular matrix (ECM)', 'ECM structural constituents' and 'ECM‑receptor interaction', whereas downregulated genes were mainly enriched in 'response to drugs', 'extracellular space', 'transcriptional activator activity' and the 'peroxisome proliferator‑activated receptor signaling pathway'. The PPI network contained 174 nodes and 1,257 edges. DNA topoisomerase 2‑a, baculoviral inhibitor of apoptosis repeat‑containing protein 5, cyclin‑dependent kinase 1, G2/mitotic‑specific cyclin‑B1 and kinetochore protein NDC80 homolog were identified as the top 5 hub genes. Furthermore, the genes in the most significant module were predominantly involved in 'mitotic nuclear division', 'mid‑body', 'protein binding' and 'cell cycle'. In conclusion, the DEGs, relative pathways and hub genes identified in the present study may aid in understanding of the molecular mechanisms underlying BC progression and provide

  15. The application of remote sensing to the development and formulation of hydrologic planning models

    Science.gov (United States)

    Fowler, T. R.; Castruccio, P. A.; Loats, H. L., Jr.

    1977-01-01

    The development of a remote sensing model and its efficiency in determining parameters of hydrologic models are reviewed. Procedures for extracting hydrologic data from LANDSAT imagery, and the visual analysis of composite imagery are presented. A hydrologic planning model is developed and applied to determine seasonal variations in watershed conditions. The transfer of this technology to a user community and contract arrangements are discussed.

  16. Wetland Hydrology | Science Inventory | US EPA

    Science.gov (United States)

    This chapter discusses the state of the science in wetland hydrology by touching upon the major hydraulic and hydrologic processes in these complex ecosystems, their measurement/estimation techniques, and modeling methods. It starts with the definition of wetlands, their benefits and types, and explains the role and importance of hydrology on wetland functioning. The chapter continues with the description of wetland hydrologic terms and related estimation and modeling techniques. The chapter provides a quick but valuable information regarding hydraulics of surface and subsurface flow, groundwater seepage/discharge, and modeling groundwater/surface water interactions in wetlands. Because of the aggregated effects of the wetlands at larger scales and their ecosystem services, wetland hydrology at the watershed scale is also discussed in which we elaborate on the proficiencies of some of the well-known watershed models in modeling wetland hydrology. This chapter can serve as a useful reference for eco-hydrologists, wetland researchers and decision makers as well as watershed hydrology modelers. In this chapter, the importance of hydrology for wetlands and their functional role are discussed. Wetland hydrologic terms and the major components of water budget in wetlands and how they can be estimated/modeled are also presented. Although this chapter does not provide a comprehensive coverage of wetland hydrology, it provides a quick understanding of the basic co

  17. Copula Entropy coupled with Wavelet Neural Network Model for Hydrological Prediction

    Science.gov (United States)

    Wang, Yin; Yue, JiGuang; Liu, ShuGuang; Wang, Li

    2018-02-01

    Artificial Neural network(ANN) has been widely used in hydrological forecasting. in this paper an attempt has been made to find an alternative method for hydrological prediction by combining Copula Entropy(CE) with Wavelet Neural Network(WNN), CE theory permits to calculate mutual information(MI) to select Input variables which avoids the limitations of the traditional linear correlation(LCC) analysis. Wavelet analysis can provide the exact locality of any changes in the dynamical patterns of the sequence Coupled with ANN Strong non-linear fitting ability. WNN model was able to provide a good fit with the hydrological data. finally, the hybrid model(CE+WNN) have been applied to daily water level of Taihu Lake Basin, and compared with CE ANN, LCC WNN and LCC ANN. Results showed that the hybrid model produced better results in estimating the hydrograph properties than the latter models.

  18. Quantifying the sources of uncertainty in an ensemble of hydrological climate-impact projections

    Science.gov (United States)

    Aryal, Anil; Shrestha, Sangam; Babel, Mukand S.

    2018-01-01

    The objective of this paper is to quantify the various sources of uncertainty in the assessment of climate change impact on hydrology in the Tamakoshi River Basin, located in the north-eastern part of Nepal. Multiple climate and hydrological models were used to simulate future climate conditions and discharge in the basin. The simulated results of future climate and river discharge were analysed for the quantification of sources of uncertainty using two-way and three-way ANOVA. The results showed that temperature and precipitation in the study area are projected to change in near- (2010-2039), mid- (2040-2069) and far-future (2070-2099) periods. Maximum temperature is likely to rise by 1.75 °C under Representative Concentration Pathway (RCP) 4.5 and by 3.52 °C under RCP 8.5. Similarly, the minimum temperature is expected to rise by 2.10 °C under RCP 4.5 and by 3.73 °C under RCP 8.5 by the end of the twenty-first century. Similarly, the precipitation in the study area is expected to change by - 2.15% under RCP 4.5 and - 2.44% under RCP 8.5 scenarios. The future discharge in the study area was projected using two hydrological models, viz. Soil and Water Assessment Tool (SWAT) and Hydrologic Engineering Center's Hydrologic Modelling System (HEC-HMS). The SWAT model projected discharge is expected to change by small amount, whereas HEC-HMS model projected considerably lower discharge in future compared to the baseline period. The results also show that future climate variables and river hydrology contain uncertainty due to the choice of climate models, RCP scenarios, bias correction methods and hydrological models. During wet days, more uncertainty is observed due to the use of different climate models, whereas during dry days, the use of different hydrological models has a greater effect on uncertainty. Inter-comparison of the impacts of different climate models reveals that the REMO climate model shows higher uncertainty in the prediction of precipitation and

  19. Pathways of topological rank analysis (PoTRA: a novel method to detect pathways involved in hepatocellular carcinoma

    Directory of Open Access Journals (Sweden)

    Chaoxing Li

    2018-04-01

    Full Text Available Complex diseases such as cancer are usually the result of a combination of environmental factors and one or several biological pathways consisting of sets of genes. Each biological pathway exerts its function by delivering signaling through the gene network. Theoretically, a pathway is supposed to have a robust topological structure under normal physiological conditions. However, the pathway’s topological structure could be altered under some pathological condition. It is well known that a normal biological network includes a small number of well-connected hub nodes and a large number of nodes that are non-hubs. In addition, it is reported that the loss of connectivity is a common topological trait of cancer networks, which is an assumption of our method. Hence, from normal to cancer, the process of the network losing connectivity might be the process of disrupting the structure of the network, namely, the number of hub genes might be altered in cancer compared to that in normal or the distribution of topological ranks of genes might be altered. Based on this, we propose a new PageRank-based method called Pathways of Topological Rank Analysis (PoTRA to detect pathways involved in cancer. We use PageRank to measure the relative topological ranks of genes in each biological pathway, then select hub genes for each pathway, and use Fisher’s exact test to test if the number of hub genes in each pathway is altered from normal to cancer. Alternatively, if the distribution of topological ranks of gene in a pathway is altered between normal and cancer, this pathway might also be involved in cancer. Hence, we use the Kolmogorov–Smirnov test to detect pathways that have an altered distribution of topological ranks of genes between two phenotypes. We apply PoTRA to study hepatocellular carcinoma (HCC and several subtypes of HCC. Very interestingly, we discover that all significant pathways in HCC are cancer-associated generally, while several

  20. A techno-economic analysis of EU renewable electricity policy pathways in 2030

    International Nuclear Information System (INIS)

    Río, Pablo del; Resch, Gustav; Ortner, Andre; Liebmann, Lukas; Busch, Sebastian; Panzer, Christian

    2017-01-01

    The aim of this paper is to assess several pathways of a harmonised European policy framework for supporting renewable electricity (RES-E) in a 2030 horizon according to different criteria. The pathways combine two main dimensions: degrees of harmonisation and instruments and design elements. A quantitative model-based analysis with the Green-X model is provided. The results of the simulations show that there are small differences between the evaluated cases regarding effectiveness. All the policy pathways score similarly with respect to RES-E deployment, i.e., with different degrees of harmonisation and whether using a feed-in tariff, a feed-in premium, a quota system with banding or a quota without banding scheme. In contrast, the policy costs clearly differ across the pathways, but the differences can mostly be attributed to the instruments rather than to the degrees of harmonisation. This is also the case with other criteria (static and dynamic efficiency and the socioeconomic and environmental benefits in terms of CO2 emissions and fossil fuels avoided). Both the degree of harmonisation and the choice of instrument influence the distribution of support costs across countries. Finally, our findings suggest that keeping strengthened national support leads to similar results to other policy pathways. - Highlights: • Pathways of a harmonised European policy framework for renewable electricity in 2030. • Two main dimensions: degrees of harmonisation and instruments. • A quantitative model-based analysis based on the Green-X model. • Small differences between the pathways regarding the effectiveness criterion. • Important differences between pathways regarding other assessment criteria.

  1. HYDROLOGY, CALHOUN COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  2. HYDROLOGY, MONTGOMERY COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  3. HYDROLOGY, DOUGLAS COUNTY, MINNESOTA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  4. HYDROLOGY, NESHOBA COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  5. HYDROLOGY, LEFLORE COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  6. HYDROLOGY, NEWTON COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  7. Weber County Hydrology Report

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  8. HYDROLOGY, LEAKE COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  9. HYDROLOGY, CHISAGO COUNTY, MN

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  10. HYDROLOGY, HOUSTON COUNTY, ALABAMA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating ALood discharges for a ALood Insurance...

  11. HYDROLOGY, WAYNE COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  12. Hydrology, OCONEE COUNTY, SC

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  13. HYDROLOGY, SUNFLOWER COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  14. HYDROLOGY, CALHOUN COUNTY, MICHIGAN

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  15. HYDROLOGY, OSCEOLA COUNTY, FL

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  16. HYDROLOGY, STEARNS COUNTY, MN

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  17. HYDROLOGY, TIPPAH COUNTY, MISSISSIPPI

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  18. HYDROLOGY, Lawrence County, ARKANSAS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a Flood Insurance...

  19. HYDROLOGY, Allegheny County, PA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a Flood Insurance...

  20. HYDROLOGY, SIMPSON COUNTY, MS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  1. HYDROLOGY, CLAIBORNE COUNTY, MS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  2. HYDROLOGY, LAFAYETTE COUNTY, MS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  3. HYDROLOGY, Yazoo COUNTY, MS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  4. HYDROLOGY, GILCHRIST COUNTY, FL

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  5. HYDROLOGY, GLADES COUNTY, FLORIDA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a Flood Insurance...

  6. HYDROLOGY, LEE COUNTY, TEXAS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a Flood Insurance...

  7. HYDROLOGY, GREENE County, ARKANSAS

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a Flood Insurance...

  8. Curricula and Syllabi in Hydrology.

    Science.gov (United States)

    United Nations Educational, Scientific, and Cultural Organization, Paris (France).

    This collection of papers is intended to provide a means for the exchange of information on hydrological techniques and for the coordination of research and data collection. The objectives and trends in hydrological education are presented. The International Hydrological Decade (IHD) Working Group on Education recommends a series of topics that…

  9. ALL-PATHWAYS DOSE ANALYSIS FOR THE PORTSMOUTH ON-SITE WASTE DISPOSAL FACILITY

    Energy Technology Data Exchange (ETDEWEB)

    Smith, F.; Phifer, M.

    2014-04-10

    A Portsmouth On-Site Waste Disposal Facility (OSWDF) All-Pathways analysis has been conducted that considers the radiological impacts to a resident farmer. It is assumed that the resident farmer utilizes a farm pond contaminated by the OSWDF to irrigate a garden and pasture and water livestock from which food for the resident farmer is obtained, and that the farmer utilizes groundwater from the Berea sandstone aquifer for domestic purposes (i.e. drinking water and showering). As described by FBP 2014b the Hydrologic Evaluation of Landfill Performance (HELP) model (Schroeder et al. 1994) and the Surface Transport Over Multiple Phases (STOMP) model (White and Oostrom 2000, 2006) were used to model the flow and transport from the OSWDF to the Points of Assessment (POAs) associated with the 680-ft elevation sandstone layer (680 SSL) and the Berea sandstone aquifer. From this modeling the activity concentrations radionuclides were projected over time at the POAs. The activity concentrations were utilized as input to a GoldSimTM (GTG 2010) dose model, described herein, in order to project the dose to a resident farmer over time. A base case and five sensitivity cases were analyzed. The sensitivity cases included an evaluation of the impacts of using a conservative inventory, an uncased well to the Berea sandstone aquifer, a low waste zone uranium distribution coefficient (Kd), different transfer factors, and reference person exposure parameters (i.e. at 95 percentile). The maximum base case dose within the 1,000 year assessment period was projected to be 1.5E-14 mrem/yr, and the maximum base case dose at any time less than 10,000 years was projected to be 0.002 mrem/yr. The maximum projected dose of any sensitivity case was approximately 2.6 mrem/yr associated with the use of an uncased well to the Berea sandstone aquifer. This sensitivity case is considered very unlikely because it assumes leakage from the location of greatest concentration in the 680 SSL in to the

  10. Hydrologic Services Course.

    Science.gov (United States)

    National Oceanic and Atmospheric Administration (DOC), Rockville, MD. National Weather Service.

    A course to develop an understanding of the scope of water resource activities, of the need for forecasting, of the National Weather Service's role in hydrology, and of the proper procedures to follow in fulfilling this role is presented. The course is one of self-help, guided by correspondence. Nine lessons are included: (1) Hydrology in the…

  11. Analysis of Phenomenels with Hydrologic Large Risk in the Hydrographic Basin of the Trotuş River

    Directory of Open Access Journals (Sweden)

    Avram Mihaela

    2017-10-01

    Full Text Available The paper presents an analysis of the high hydrological risk phenomena formed in the hydrographic basin of the Trotuş River in the last period of time. The Trotuş River and the tributaries are monitored by 21 hydrometric stations. Precipitation volume processing indicated a number of risk factors that have prevailed over the last 20 years. The hydrological data processing revealed the presence of several flood flows in the same year. The effects of the floods have materialized through the excessive degradation of river bedside regulation and shore defence works. The floods of the past 25 years have resulted in the destruction of a large number of economic and social objectives in the Trotuş River area, as well as human losses. Parameters of hydroclimatic risk highlighted by research are represented by torrential precipitations, floods with high probability, high frequency of high-flow flows, formation of high erosion velocities of the bed, etc. Parameters of hydroclimatic risk impose special conditions for the design of river regularization and shore defence.

  12. Can we Observe and Assess Whether the Global Hydrological Cycle is "Intensifying"?

    Science.gov (United States)

    Wood, E. F.; Sheffield, J.

    2012-12-01

    There is controversy over whether the hydrological cycle is "intensifying" (or "accelerating"), and if so how and where? Resolving this critical question is a central goal of both national (e.g. NASA's Energy and Water cycle Study: NEWS) and international (WCRP Global Energy and Water cycle Experiment: GEWEX) programs. Its resolution has significant implications for understanding changes in hydroclimatic states and variability, and in future water security at regional to global scales. Over the last decade a number of papers have addressed trends and change in specific water cycle variables with results that can best be described as inconclusive, regardless of the conclusions of specific papers. In this presentation a number of recent studies will be reviewed for their consistency in assessing whether collectively one can make conclusions regarding how the hydrologic cycle is changing. The presentation will also demonstrate a pathway for analyzing where to observe for the detection of change based on a NASA-supported, global, 1983-2009, terrestrial water cycle Earth System Data Record project being led by the author. Initial results will be presented and a discussion presented on the extent that the proposed strategy can be used to detect change in the terrestrial hydrological cycle.

  13. Dynamic Collaboration Infrastructure for Hydrologic Science

    Science.gov (United States)

    Tarboton, D. G.; Idaszak, R.; Castillo, C.; Yi, H.; Jiang, F.; Jones, N.; Goodall, J. L.

    2016-12-01

    Data and modeling infrastructure is becoming increasingly accessible to water scientists. HydroShare is a collaborative environment that currently offers water scientists the ability to access modeling and data infrastructure in support of data intensive modeling and analysis. It supports the sharing of and collaboration around "resources" which are social objects defined to include both data and models in a structured standardized format. Users collaborate around these objects via comments, ratings, and groups. HydroShare also supports web services and cloud based computation for the execution of hydrologic models and analysis and visualization of hydrologic data. However, the quantity and variety of data and modeling infrastructure available that can be accessed from environments like HydroShare is increasing. Storage infrastructure can range from one's local PC to campus or organizational storage to storage in the cloud. Modeling or computing infrastructure can range from one's desktop to departmental clusters to national HPC resources to grid and cloud computing resources. How does one orchestrate this vast number of data and computing infrastructure without needing to correspondingly learn each new system? A common limitation across these systems is the lack of efficient integration between data transport mechanisms and the corresponding high-level services to support large distributed data and compute operations. A scientist running a hydrology model from their desktop may require processing a large collection of files across the aforementioned storage and compute resources and various national databases. To address these community challenges a proof-of-concept prototype was created integrating HydroShare with RADII (Resource Aware Data-centric collaboration Infrastructure) to provide software infrastructure to enable the comprehensive and rapid dynamic deployment of what we refer to as "collaborative infrastructure." In this presentation we discuss the

  14. Research on Multi Hydrological Models Applicability and Modelling Data Uncertainty Analysis for Flash Flood Simulation in Hilly Area

    Science.gov (United States)

    Ye, L.; Wu, J.; Wang, L.; Song, T.; Ji, R.

    2017-12-01

    Flooding in small-scale watershed in hilly area is characterized by short time periods and rapid rise and recession due to the complex underlying surfaces, various climate type and strong effect of human activities. It is almost impossible for a single hydrological model to describe the variation of flooding in both time and space accurately for all the catchments in hilly area because the hydrological characteristics can vary significantly among different catchments. In this study, we compare the performance of 5 hydrological models with varying degrees of complexity for simulation of flash flood for 14 small-scale watershed in China in order to find the relationship between the applicability of the hydrological models and the catchments characteristics. Meanwhile, given the fact that the hydrological data is sparse in hilly area, the effect of precipitation data, DEM resolution and their interference on the uncertainty of flood simulation is also illustrated. In general, the results showed that the distributed hydrological model (HEC-HMS in this study) performed better than the lumped hydrological models. Xinajiang and API models had good simulation for the humid catchments when long-term and continuous rainfall data is provided. Dahuofang model can simulate the flood peak well while the runoff generation module is relatively poor. In addition, the effect of diverse modelling data on the simulations is not simply superposed, and there is a complex interaction effect among different modelling data. Overall, both the catchment hydrological characteristics and modelling data situation should be taken into consideration in order to choose the suitable hydrological model for flood simulation for small-scale catchment in hilly area.

  15. Measuring what we manage - the importance of hydrological data to water resources management

    Science.gov (United States)

    Stewart, B.

    2015-04-01

    Water resources cannot be managed, unless we know where they are, in what quantity and quality, and how variable they are likely to be in the foreseeable future. Data from hydrological networks are used by public and private sectors for a variety of different applications. This paper discusses the value proposition behind the collection, analysis and use of hydrological data in support of these applications. The need for hydrological data and the requirements for the data are outlined, and information is provided on topics such as status of networks and data access and sharing. This paper outlines elements of the contribution by the World Meteorological Organization (WMO) to hydrological data collection and covers aspects related to quality management in the collection of hydrological data, especially regarding streamflow gauging, network design and capacity building for services delivery. It should be noted that the applications which make use of hydrological data may also be significantly impacted by climate change.

  16. 1:250,000-scale Hydrologic Units of the United States

    Science.gov (United States)

    Steeves, Peter; Nebert, Douglas

    1994-01-01

    The Geographic Information Retrieval and Analysis System (GIRAS) was developed in the mid 70s to put into digital form a numberof data layers which were of interest to the USGS. One of these data layers was the Hydrologic Units. The map is based on the Hydrologic Unit Maps published by the U.S. Geological Survey Office of Water Data Coordination, together with the list descriptions and name of region, subregion, accounting units, and cataloging unit. The hydrologic units are encoded with an eight-digit number that indicates the hydrologic region (first two digits), hydrologic subregion (second two digits), accounting unit (third two digits), and cataloging unit (fourth two digits). The data produced by GIRAS was originally collected at a scale of 1:250K. Some areas, notably major cities in the west, were recompiled at a scale of 1:100K. In order to join the data together and use the data in a geographic information system (GIS) the data were processed in the ARC/INFO GUS software package. Within the GIS, the data were edgematched and the neatline boundaries between maps were removed to create a single data set for the conterminous

  17. Hydrology

    Science.gov (United States)

    Sharp, John M.

    1977-01-01

    Lists many recent research projects in hydrology, including flow in fractured media, improvements in remote-sensing techniques, effects of urbanization on water resources, and developments in drainage basins. (MLH)

  18. Benchmarking observational uncertainties for hydrology (Invited)

    Science.gov (United States)

    McMillan, H. K.; Krueger, T.; Freer, J. E.; Westerberg, I.

    2013-12-01

    There is a pressing need for authoritative and concise information on the expected error distributions and magnitudes in hydrological data, to understand its information content. Many studies have discussed how to incorporate uncertainty information into model calibration and implementation, and shown how model results can be biased if uncertainty is not appropriately characterised. However, it is not always possible (for example due to financial or time constraints) to make detailed studies of uncertainty for every research study. Instead, we propose that the hydrological community could benefit greatly from sharing information on likely uncertainty characteristics and the main factors that control the resulting magnitude. In this presentation, we review the current knowledge of uncertainty for a number of key hydrological variables: rainfall, flow and water quality (suspended solids, nitrogen, phosphorus). We collated information on the specifics of the data measurement (data type, temporal and spatial resolution), error characteristics measured (e.g. standard error, confidence bounds) and error magnitude. Our results were primarily split by data type. Rainfall uncertainty was controlled most strongly by spatial scale, flow uncertainty was controlled by flow state (low, high) and gauging method. Water quality presented a more complex picture with many component errors. For all variables, it was easy to find examples where relative error magnitude exceeded 40%. We discuss some of the recent developments in hydrology which increase the need for guidance on typical error magnitudes, in particular when doing comparative/regionalisation and multi-objective analysis. Increased sharing of data, comparisons between multiple catchments, and storage in national/international databases can mean that data-users are far removed from data collection, but require good uncertainty information to reduce bias in comparisons or catchment regionalisation studies. Recently it has

  19. A novel approach to select differential pathways associated with hypertrophic cardiomyopathy based on gene co‑expression analysis.

    Science.gov (United States)

    Chen, Xiao-Min; Feng, Ming-Jun; Shen, Cai-Jie; He, Bin; Du, Xian-Feng; Yu, Yi-Bo; Liu, Jing; Chu, Hui-Min

    2017-07-01

    The present study was designed to develop a novel method for identifying significant pathways associated with human hypertrophic cardiomyopathy (HCM), based on gene co‑expression analysis. The microarray dataset associated with HCM (E‑GEOD‑36961) was obtained from the European Molecular Biology Laboratory‑European Bioinformatics Institute database. Informative pathways were selected based on the Reactome pathway database and screening treatments. An empirical Bayes method was utilized to construct co‑expression networks for informative pathways, and a weight value was assigned to each pathway. Differential pathways were extracted based on weight threshold, which was calculated using a random model. In order to assess whether the co‑expression method was feasible, it was compared with traditional pathway enrichment analysis of differentially expressed genes, which were identified using the significance analysis of microarrays package. A total of 1,074 informative pathways were screened out for subsequent investigations and their weight values were also obtained. According to the threshold of weight value of 0.01057, 447 differential pathways, including folding of actin by chaperonin containing T‑complex protein 1 (CCT)/T‑complex protein 1 ring complex (TRiC), purine ribonucleoside monophosphate biosynthesis and ubiquinol biosynthesis, were obtained. Compared with traditional pathway enrichment analysis, the number of pathways obtained from the co‑expression approach was increased. The results of the present study demonstrated that this method may be useful to predict marker pathways for HCM. The pathways of folding of actin by CCT/TRiC and purine ribonucleoside monophosphate biosynthesis may provide evidence of the underlying molecular mechanisms of HCM, and offer novel therapeutic directions for HCM.

  20. Multiple Changes in the Hydrologic Regime of the Yangtze River and the Possible Impact of Reservoirs

    Directory of Open Access Journals (Sweden)

    Feng Huang

    2016-09-01

    Full Text Available This paper investigates hydrologic changes in the Yangtze River using long-term daily stream flow records (1955–2013 collected from four flow gauging stations located from the upper to the lower reaches of the river. The hydrologic regime is quantified using the Indicators of Hydrologic Alteration, which statistically characterize hydrologic variation within each year. Scanning t-test is applied to analyze multiple changes in the hydrologic regime at different time scales. Then, coherency analysis is applied to identify common changes among different hydrologic indicators and across different reaches of the Yangtze River. The results point to various change patterns in the five components of hydrologic regime, including the magnitude of monthly water conditions, magnitude and duration of annual extreme water conditions, timing of annual extreme water conditions, frequency and duration of high and low pulses, and rate and frequency of water condition changes. The 32 hydrologic indicators feature multiple temporal-scale changes. Spatial variations can be observed in the hydrologic changes of the upper, middle, and lower reaches of the river. Common changes in different reaches consist of hydrologic indicators including the monthly flow in October and the low-flow indicators. The monthly flow in October is dominated by decreasing trends, while the monthly flows between January and March, the annual minimum 1/3/7/30/90-day flows, and the base flow index are characterized by increasing trends. Low pulse duration and total days of low pulses feature downward trends. The coherency analysis reveals significant relationships between the monthly flow in October and the low-flow indicators, indicating that reservoir regulation is an important factor behind the hydrologic changes.

  1. Climate change impacts on hydrology and water resources

    Directory of Open Access Journals (Sweden)

    Fred Fokko Hattermann

    2015-04-01

    Full Text Available Aim of our study is to quantify the impacts of climate change on hydrology in the large river basins in Germany (Rhine, Elbe, Danube, Weser and Ems and thereby giving the range of impact uncertainty created by the most recent regional climate projections. The study shows mainly results for the A1B SRES (Special Report on Emission Scenario scenario by comparing the reference period 1981–2010 and the scenario periods 2031–2060 and 2061–2090 and using climate projections of a combination of 4 Global Climate Models (GCMs and 12 Regional Climate Models (RCMs as climate driver. The outcome is compared against impacts driven by a more recent RCP (Representative Emission Pathways scenario by using data of a statistical RCM. The results indicate that more robust conclusions can be drawn for some river basins, especially the Rhine and Danube basins, while diversity of results leads to higher uncertainty in the other river basins. The results also show that hydrology is very sensitive to changes in climate and effects of a general increase in precipitation can even be over-compensated by an increase in evapotranspiration. The decrease of runoff in late summer shown in most results can be an indicator for more pronounced droughts under scenario conditions.

  2. JAMS - a software platform for modular hydrological modelling

    Science.gov (United States)

    Kralisch, Sven; Fischer, Christian

    2015-04-01

    Current challenges of understanding and assessing the impacts of climate and land use changes on environmental systems demand for an ever-increasing integration of data and process knowledge in corresponding simulation models. Software frameworks that allow for a seamless creation of integrated models based on less complex components (domain models, process simulation routines) have therefore gained increasing attention during the last decade. JAMS is an Open-Source software framework that has been especially designed to cope with the challenges of eco-hydrological modelling. This is reflected by (i) its flexible approach for representing time and space, (ii) a strong separation of process simulation components from the declarative description of more complex models using domain specific XML, (iii) powerful analysis and visualization functions for spatial and temporal input and output data, and (iv) parameter optimization and uncertainty analysis functions commonly used in environmental modelling. Based on JAMS, different hydrological and nutrient-transport simulation models were implemented and successfully applied during the last years. We will present the JAMS core concepts and give an overview of models, simulation components and support tools available for that framework. Sample applications will be used to underline the advantages of component-based model designs and to show how JAMS can be used to address the challenges of integrated hydrological modelling.

  3. Hydrologic analysis for ecological risk assessment of watersheds with abandoned mine lands

    International Nuclear Information System (INIS)

    Gallagher, D.; Babendreier, J.; Cherry, D.

    1999-01-01

    As part of on-going study of acid mine drainage (AMD), a comprehensive ecological risk assessment was conducted in the Leading Creek Watershed in southeast Ohio. The watershed is influenced by agriculture and active and abandoned coal-mining operations. This work presents a broad overview of several quantitative measures of hydrology and hydraulic watershed properties available for in risk assessment and evaluates their relation to metrics of ecology. Data analysis included statistical comparisons of metrics of ecology, ecotoxicology, water quality, and physically based parameters describing land use, geomorphology, flow, velocity, and particle size. A multiple regression analysis indicated that abandoned mining operations dominated impacts upon aquatic ecology. It also indicated low flow velocity measurements and a ratio of maximum velocity to average velocity at low flow where helpful in describing variation in macroinvertebrate Total Taxa scores. Other key parameters also identified strong impact relationships with biodiversity trends and included pH, simple knowledge of any mining upstream, calculated % of the subshed covered by strip mines, and the measured depth of streambed sediments from site to site

  4. Regionalization Study of Satellite based Hydrological Model (SHM) in Hydrologically Homogeneous River Basins of India

    Science.gov (United States)

    Kumari, Babita; Paul, Pranesh Kumar; Singh, Rajendra; Mishra, Ashok; Gupta, Praveen Kumar; Singh, Raghvendra P.

    2017-04-01

    A new semi-distributed conceptual hydrological model, namely Satellite based Hydrological Model (SHM), has been developed under 'PRACRITI-2' program of Space Application Centre (SAC), Ahmedabad for sustainable water resources management of India by using data from Indian Remote Sensing satellites. Entire India is divided into 5km x 5km grid cells and properties at the center of the cells are assumed to represent the property of the cells. SHM contains five modules namely surface water, forest, snow, groundwater and routing. Two empirical equations (SCS-CN and Hargreaves) and water balance method have been used in the surface water module; the forest module is based on the calculations of water balancing & dynamics of subsurface. 2-D Boussinesq equation is used for groundwater modelling which is solved using implicit finite-difference. The routing module follows a distributed routing approach which requires flow path and network with the key point of travel time estimation. The aim of this study is to evaluate the performance of SHM using regionalization technique which also checks the usefulness of a model in data scarce condition or for ungauged basins. However, homogeneity analysis is pre-requisite to regionalization. Similarity index (Φ) and hierarchical agglomerative cluster analysis are adopted to test the homogeneity in terms of physical attributes of three basins namely Brahmani (39,033 km km^2)), Baitarani (10,982 km km^2)) and Kangsabati (9,660 km km^2)) with respect to Subarnarekha (29,196 km km^2)) basin. The results of both homogeneity analysis show that Brahmani basin is the most homogeneous with respect to Subarnarekha river basin in terms of physical characteristics (land use land cover classes, soiltype and elevation). The calibration and validation of model parameters of Brahmani basin is in progress which are to be transferred into the SHM set up of Subarnarekha basin and results are to be compared with the results of calibrated and validated

  5. High resolution weather data for urban hydrological modelling and impact assessment, ICT requirements and future challenges

    Science.gov (United States)

    ten Veldhuis, Marie-claire; van Riemsdijk, Birna

    2013-04-01

    Hydrological analysis of urban catchments requires high resolution rainfall and catchment information because of the small size of these catchments, high spatial variability of the urban fabric, fast runoff processes and related short response times. Rainfall information available from traditional radar and rain gauge networks does no not meet the relevant scales of urban hydrology. A new type of weather radars, based on X-band frequency and equipped with Doppler and dual polarimetry capabilities, promises to provide more accurate rainfall estimates at the spatial and temporal scales that are required for urban hydrological analysis. Recently, the RAINGAIN project was started to analyse the applicability of this new type of radars in the context of urban hydrological modelling. In this project, meteorologists and hydrologists work closely together in several stages of urban hydrological analysis: from the acquisition procedure of novel and high-end radar products to data acquisition and processing, rainfall data retrieval, hydrological event analysis and forecasting. The project comprises of four pilot locations with various characteristics of weather radar equipment, ground stations, urban hydrological systems, modelling approaches and requirements. Access to data processing and modelling software is handled in different ways in the pilots, depending on ownership and user context. Sharing of data and software among pilots and with the outside world is an ongoing topic of discussion. The availability of high resolution weather data augments requirements with respect to the resolution of hydrological models and input data. This has led to the development of fully distributed hydrological models, the implementation of which remains limited by the unavailability of hydrological input data. On the other hand, if models are to be used in flood forecasting, hydrological models need to be computationally efficient to enable fast responses to extreme event conditions. This

  6. Hydrologic models and analysis of water availability in Cuyama Valley, California

    Science.gov (United States)

    Hanson, R.T.; Flint, Lorraine E.; Faunt, Claudia C.; Gibbs, Dennis R.; Schmid, Wolfgang

    2014-01-01

    supplied by groundwater, which is augmented by precipitation during wet winter and spring seasons. In addition, the amount of groundwater used for irrigation varies from year to year in response to climate variation and can increase dramatically in dry years. Model simulation results, however, also indicated that irrigation may have been less efficient during wet years. Agricultural pumpage is a major component to simulated outflow that is often poorly recorded. Therefore, an integrated, coupled farm-process model is used to estimate historical pumpage for water-balance subregions that evolved with the development of groundwater in the Valley from 1949 through 2010. The integrated hydrologic model includes these water-balance subregions and delineates natural, municipal, and agricultural land use; streamflow networks; and groundwater flow systems. The redefinition of the geohydrologic framework (including the internal architecture of the sedimentary units) and incorporation of these units into the simulation of the regional groundwater flow system indicated that faults have compartmentalized the alluvial deposits into subregions, which have responded differently to regional groundwater flow, locations of recharge, and the effects of development. The Cuyama Valley comprises nine subregions grouped into three regional zones, the Main, Ventucopa Uplands, and Sierra Madre Foothills, which are fault bounded, represent different proportions of the three alluvial aquifers, and have different water quality. The CUVHM uses MF-OWHM to simulate and assess the use and movement of water, including the evolution of land use and related water-balance regions. The model is capable of being accurate at annual to interannual time frames and at subregional to valley-wide spatial scales, which allows for analysis of the groundwater hydrologic budget for the water years 1950–2010, as well as potential assessment of the sustainable use of groundwater. Simulated changes in storage over time

  7. Integrated hydrological modelling of the North China Plain

    DEFF Research Database (Denmark)

    Shu, Yunqiao; Villholth, Karen G.; Jensen, Karsten Høgh

    2012-01-01

    The integrated hydrological model MIKE SHE was applied to a part of the North China Plain to examine the dynamics of the hydrological system and to assess water management options to restore depleted groundwater resources. The model simulates the spatio-temporal distribution of recharge...... for scenario analysis of the effect of different cropping rotations, irrigation intensity, and other water management options, like the implementation of the South to North Water Transfer (SNWT) project. The model analysis verified that groundwater tables in the region are subject to steep declines (up to 1 m....../yr) due to decades of intensive exploitation of the groundwater resources for crop irrigation, primarily the widespread crop rotation of irrigated winter wheat and mostly rainfed summer maize. The SNWT project mitigates water stress in Shijiazhuang city and areas adjacent to wastewater canals but cannot...

  8. Assimilation of remote sensing observations into a continuous distributed hydrological model: impacts on the hydrologic cycle

    Science.gov (United States)

    Laiolo, Paola; Gabellani, Simone; Campo, Lorenzo; Cenci, Luca; Silvestro, Francesco; Delogu, Fabio; Boni, Giorgio; Rudari, Roberto

    2015-04-01

    The reliable estimation of hydrological variables (e.g. soil moisture, evapotranspiration, surface temperature) in space and time is of fundamental importance in operational hydrology to improve the forecast of the rainfall-runoff response of catchments and, consequently, flood predictions. Nowadays remote sensing can offer a chance to provide good space-time estimates of several hydrological variables and then improve hydrological model performances especially in environments with scarce in-situ data. This work investigates the impact of the assimilation of different remote sensing products on the hydrological cycle by using a continuous physically based distributed hydrological model. Three soil moisture products derived by ASCAT (Advanced SCATterometer) are used to update the model state variables. The satellite-derived products are assimilated into the hydrological model using different assimilation techniques: a simple nudging and the Ensemble Kalman Filter. Moreover two assimilation strategies are evaluated to assess the impact of assimilating the satellite products at model spatial resolution or at the satellite scale. The experiments are carried out for three Italian catchments on multi year period. The benefits on the model predictions of discharge, LST, evapotranspiration and soil moisture dynamics are tested and discussed.

  9. Technological developments in real-time operational hydrologic forecasting in the United States

    Science.gov (United States)

    Hudlow, Michael D.

    1988-09-01

    The hydrologic forecasting service of the United States spans applications and scales ranging from those associated with the issuance of flood and flash warnings to those pertaining to seasonal water supply forecasts. New technological developments (underway in or planned by the National Weather Service (NWS) in support of the Hydrologic Program) are carried out as combined efforts by NWS headquarters and field personnel in cooperation with other organizations. These developments fall into two categories: hardware and software systems technology, and hydrometeorological analysis and prediction technology. Research, development, and operational implementation in progress in both of these areas are discussed. Cornerstones of an overall NWS modernization effort include implementation of state-of-the-art data acquisition systems (including the Next Generation Weather Radar) and communications and computer processing systems. The NWS Hydrologic Service will capitalize on these systems and will incorporate results from specific hydrologic projects including collection and processing of multivariate data sets, conceptual hydrologic modeling systems, integrated hydrologic modeling systems with meteorological interfaces and automatic updating of model states, and extended streamflow prediction techniques. The salient aspects of ongoing work in these areas are highlighted in this paper, providing some perspective on the future U.S. hydrologic forecasting service and its transitional period into the 1990s.

  10. Environmental isotope hydrology

    International Nuclear Information System (INIS)

    1973-01-01

    Environmental isotope hydrology is a relatively new field of investigation based on isotopic variations observed in natural waters. These isotopic characteristics have been established over a broad space and time scale. They cannot be controlled by man, but can be observed and interpreted to gain valuable regional information on the origin, turnover and transit time of water in the system which often cannot be obtained by other techniques. The cost of such investigations is usually relatively small in comparison with the cost of classical hydrological studies. The main environmental isotopes of hydrological interest are the stable isotopes deuterium (hydrogen-2), carbon-13, oxygen-18, and the radioactive isotopes tritium (hydrogen-3) and carbon-14. Isotopes of hydrogen and oxygen are ideal geochemical tracers of water because their concentrations are usually not subject to change by interaction with the aquifer material. On the other hand, carbon compounds in groundwater may interact with the aquifer material, complicating the interpretation of carbon-14 data. A few other environmental isotopes such as 32 Si and 238 U/ 234 U have been proposed recently for hydrological purposes but their use has been quite limited until now and they will not be discussed here. (author)

  11. Identifying dominant controls on hydrologic parameter transfer from gauged to ungauged catchments: a comparative hydrology approach

    Science.gov (United States)

    Singh, R.; Archfield, S.A.; Wagener, T.

    2014-01-01

    Daily streamflow information is critical for solving various hydrologic problems, though observations of continuous streamflow for model calibration are available at only a small fraction of the world’s rivers. One approach to estimate daily streamflow at an ungauged location is to transfer rainfall–runoff model parameters calibrated at a gauged (donor) catchment to an ungauged (receiver) catchment of interest. Central to this approach is the selection of a hydrologically similar donor. No single metric or set of metrics of hydrologic similarity have been demonstrated to consistently select a suitable donor catchment. We design an experiment to diagnose the dominant controls on successful hydrologic model parameter transfer. We calibrate a lumped rainfall–runoff model to 83 stream gauges across the United States. All locations are USGS reference gauges with minimal human influence. Parameter sets from the calibrated models are then transferred to each of the other catchments and the performance of the transferred parameters is assessed. This transfer experiment is carried out both at the scale of the entire US and then for six geographic regions. We use classification and regression tree (CART) analysis to determine the relationship between catchment similarity and performance of transferred parameters. Similarity is defined using physical/climatic catchment characteristics, as well as streamflow response characteristics (signatures such as baseflow index and runoff ratio). Across the entire US, successful parameter transfer is governed by similarity in elevation and climate, and high similarity in streamflow signatures. Controls vary for different geographic regions though. Geology followed by drainage, topography and climate constitute the dominant similarity metrics in forested eastern mountains and plateaus, whereas agricultural land use relates most strongly with successful parameter transfer in the humid plains.

  12. Metabolic-flux analysis of hydrogen production pathway in Citrobacter amalonaticus Y19

    Energy Technology Data Exchange (ETDEWEB)

    Oh, You-Kwan; Kim, Mi-Sun [Bioenergy Research Center, Korea Institute of Energy Research, Daejeon 305-343 (Korea); Kim, Heung-Joo; Park, Sunghoon [Department of Chemical and Biochemical Engineering and Institute for Environmental Technology and Industry, Pusan National University, Busan 609-735 (Korea); Ryu, Dewey D.Y. [Biochemical Engineering Program, Department of Chemical Engineering and Material Science, University of California, Davis, CA 95616 (United States)

    2008-03-15

    For the newly isolated chemoheterotrophic bacterium Citrobacter amalonaticus Y19, anaerobic glucose metabolism and hydrogen (H{sub 2}) production pathway were studied using batch cultivation and an in silico metabolic-flux analysis. Batch cultivation was conducted under varying initial glucose concentration between 1.5 and 9.5 g/L with quantitative measurement of major metabolites to obtain accurate carbon material balance. The metabolic flux of Y19 was analyzed using a metabolic-pathway model which was constructed from 81 biochemical reactions. The linear optimization program MetaFluxNet was employed for the analysis. When the specific growth rate of cells was chosen as an objective function, the model described the batch culture characteristics of Ci. amalonaticus Y19 reasonably well. When the specific H{sub 2} production rate was selected as an objective function, on the other hand, the achievable maximal H{sub 2} production yield (8.7molH{sub 2}/mol glucose) and the metabolic pathway enabling the high H{sub 2} yield were identified. The pathway involved non-native NAD(P)-linked hydrogenase and H{sub 2} production from NAD(P)H which were supplied at a high rate from glucose degradation through the pentose phosphate pathway. (author)

  13. Pathway-based Analysis of the Hidden Genetic Heterogeneities in Cancers

    Directory of Open Access Journals (Sweden)

    Xiaolei Zhao

    2014-02-01

    Full Text Available Many cancers apparently showing similar phenotypes are actually distinct at the molecular level, leading to very different responses to the same treatment. It has been recently demonstrated that pathway-based approaches are robust and reliable for genetic analysis of cancers. Nevertheless, it remains unclear whether such function-based approaches are useful in deciphering molecular heterogeneities in cancers. Therefore, we aimed to test this possibility in the present study. First, we used a NCI60 dataset to validate the ability of pathways to correctly partition samples. Next, we applied the proposed method to identify the hidden subtypes in diffuse large B-cell lymphoma (DLBCL. Finally, the clinical significance of the identified subtypes was verified using survival analysis. For the NCI60 dataset, we achieved highly accurate partitions that best fit the clinical cancer phenotypes. Subsequently, for a DLBCL dataset, we identified three hidden subtypes that showed very different 10-year overall survival rates (90%, 46% and 20% and were highly significantly (P = 0.008 correlated with the clinical survival rate. This study demonstrated that the pathway-based approach is promising for unveiling genetic heterogeneities in complex human diseases.

  14. Hydrological River Drought Analysis (Case Study: Lake Urmia Basin Rivers

    Directory of Open Access Journals (Sweden)

    Mohammad Nazeri Tahrudi

    2017-02-01

    Full Text Available Introduction: Drought from the hydrological viewpoint is a continuation of the meteorological drought that cause of the lack of surface water such as rivers, lakes, reservoirs and groundwater resources. This analysis, which is generally on the surface streams, reservoirs, lakes and groundwater, takes place as hydrological drought considered and studied. So the data on the quantity of flow of the rivers in this study is of fundamental importance. This data are included, level, flow, river flow is no term (5. Overall the hydrological drought studies are focused on annual discharges, maximum annual discharge or minimum discharge period. The most importance of this analysis is periodically during the course of the analysis remains a certain threshold and subthresholdrunoff volume fraction has created. In situations where water for irrigation or water of a river without any reservoir, is not adequate, the minimum flow analysis, the most important factor to be considered (4. The aim of this study is evaluatingthe statistical distributions of drought volume rivers data from the Urmia Lake’s rivers and its return period. Materials and Methods: Urmia Lake is a biggest and saltiest continued lake in Iran. The Lake Urmia basin is one of the most important basins in Iran region which is located in the North West of Iran. With an extent of 52700 square kilometers and an area equivalent to 3.21% of the total area of the country, This basin is located between the circuit of 35 degrees 40 minutes to 38 degrees 29 minutes north latitude and the meridian of 44 degrees 13 minutes to 47 degrees 53 minutes east longitude. In this study used the daily discharge data (m3s-1 of Urmia Lake Rivers. Extraction of river drought volume The drought durations were extracted from the daily discharge of 13 studied stations. The first mean year was calculated for each 365 days using the Eq 1 (14. (1 (For i=1,2,3,…,365 That Ki is aith mean year, Yijis ith day discharge in jth

  15. Global hydrological droughts in the 21st century under a changing hydrological regime

    NARCIS (Netherlands)

    Wanders, Niko|info:eu-repo/dai/nl/364253940; Wada, Yoshi|info:eu-repo/dai/nl/341387819; van Lanen, H.A.J

    2015-01-01

    Climate change very likely impacts future hydrological drought characteristics across the world. Here, we quantify the impact of climate change on future low flows and associated hydrological drought characteristics on a global scale using an alternative drought identification approach that

  16. Analysis on hydrological condition for uranium ore formation in Wuerhe district, Junggar Basin

    International Nuclear Information System (INIS)

    Zhang Quanqing; Zhang Xinke; Ren Manchuan

    2009-01-01

    Wuerhe district is located in the northwestern part of Junggar Basin, Xinjiang. It belongs to a relative quiet area without the obvious tectonic activities and obvious subsequent tectonic activization. Through the regional uranium resources evaluation on this area, the inter-bedded oxidation zone and uranium mineralization are discovered in Cretaceous. The wall rock, the recharge-runoff-discharge mechanism of groundwater, palaeo-hydrological condition, hydrological and hydrogeochemical features of groundwater are introduced briefly, the favorable uranium ore-forming segment is summarized to be located in the fore-mountain area to the west of Ke-Xia fault terrace zone. (authors)

  17. Improving Robustness of Hydrologic Ensemble Predictions Through Probabilistic Pre- and Post-Processing in Sequential Data Assimilation

    Science.gov (United States)

    Wang, S.; Ancell, B. C.; Huang, G. H.; Baetz, B. W.

    2018-03-01

    Data assimilation using the ensemble Kalman filter (EnKF) has been increasingly recognized as a promising tool for probabilistic hydrologic predictions. However, little effort has been made to conduct the pre- and post-processing of assimilation experiments, posing a significant challenge in achieving the best performance of hydrologic predictions. This paper presents a unified data assimilation framework for improving the robustness of hydrologic ensemble predictions. Statistical pre-processing of assimilation experiments is conducted through the factorial design and analysis to identify the best EnKF settings with maximized performance. After the data assimilation operation, statistical post-processing analysis is also performed through the factorial polynomial chaos expansion to efficiently address uncertainties in hydrologic predictions, as well as to explicitly reveal potential interactions among model parameters and their contributions to the predictive accuracy. In addition, the Gaussian anamorphosis is used to establish a seamless bridge between data assimilation and uncertainty quantification of hydrologic predictions. Both synthetic and real data assimilation experiments are carried out to demonstrate feasibility and applicability of the proposed methodology in the Guadalupe River basin, Texas. Results suggest that statistical pre- and post-processing of data assimilation experiments provide meaningful insights into the dynamic behavior of hydrologic systems and enhance robustness of hydrologic ensemble predictions.

  18. Development of a Historical Hydrological online research and application platform for Switzerland - Historical Hydrological Atlas of Switzerland (HHAS)

    Science.gov (United States)

    Wetter, Oliver

    2017-04-01

    It is planned to develop and maintain a historical hydrological online platform for Switzerland, which shall be specially designed for the needs of research and federal, cantonal or private institutions being interested in hydrological risk assessment and protection measures. The aim is on the one hand to facilitate the access to raw data which generally is needed for further historical hydrological reconstruction and quantification, so that future research will be achieved in significantly shorter time. On the other hand, new historical hydrological research results shall be continuously included in order to establish this platform as a useful tool for the assessment of hydrological risk by including the long term experience of reconstructed pre-instrumental hydrological extreme events like floods and droughts. Meteorological parameters that may trigger extreme hydrological events, like monthly or seasonally resolved reconstructions of temperature and precipitation shall be made accessible in this platform as well. The ultimate goal will be to homogenise the reconstructed hydrological extreme events which usually appeared in the pre anthropogenic influence period under different climatological as well as different hydrological regimes and topographical conditions with the present day state. Long term changes of reconstructed small- to extreme flood seasonality, based on municipal accounting records, will be included in the platform as well. This helps - in combination with the before mentioned meteorological parameters - to provide an increased understanding of the major changes in the generally complex overall system that finally causes hydrological extreme events. The goal of my presentation at the Historical Climatology session is to give an overview about the applied historical climatological and historical hydrological methodologies that are applied on the historical raw data (evidence) to reconstruct pre instrumental hydrological events and meteorological

  19. Diagnosing the impact of alternative calibration strategies on coupled hydrologic models

    Science.gov (United States)

    Smith, T. J.; Perera, C.; Corrigan, C.

    2017-12-01

    Hydrologic models represent a significant tool for understanding, predicting, and responding to the impacts of water on society and society on water resources and, as such, are used extensively in water resources planning and management. Given this important role, the validity and fidelity of hydrologic models is imperative. While extensive focus has been paid to improving hydrologic models through better process representation, better parameter estimation, and better uncertainty quantification, significant challenges remain. In this study, we explore a number of competing model calibration scenarios for simple, coupled snowmelt-runoff models to better understand the sensitivity / variability of parameterizations and its impact on model performance, robustness, fidelity, and transferability. Our analysis highlights the sensitivity of coupled snowmelt-runoff model parameterizations to alterations in calibration approach, underscores the concept of information content in hydrologic modeling, and provides insight into potential strategies for improving model robustness / fidelity.

  20. Hydrology

    International Nuclear Information System (INIS)

    Obando G, E.

    1989-01-01

    Isotopical techniques are used in hydrology area for exploration, evaluation and exploration of water investigation. These techniques have been used successfully and are often the best or only means for providing certain hydrogeological parameters

  1. Multifractal analysis of different hydrological products of X-band radar

    Science.gov (United States)

    Skouri-Plakali, Ilektra; Da Silva Rocha Paz, Igor; Ichiba, Abdellah; Gires, Auguste; Tchiguirinskaia, Ioulia; Schertzer, Daniel

    2017-04-01

    Rainfall is widely considered as the hydrological process that triggers all the others. Its accurate measurements are crucial especially when they are used afterwards for the hydrological modeling of urban and peri-urban catchments for decision-making. Rainfall is a complex process and is scale dependent in space and time. Hence a high spatial and temporal resolution of the data is more appropriate for urban modeling. Therefore, a great interest of high-resolution measurements of precipitation in space and time is manifested. Radar technologies have not stopped evolving since their first appearance about the mid-twentieth. Indeed, the turning point work by Marshall-Palmer (1948) has established the Z - R power-law relation that has been widely used, with major scientific efforts being devoted to find "the best choice" of the two associated parameters. Nowadays X-band radars, being provided with dual-polarization and Doppler means, offer more accurate data of higher resolution. The fact that drops are oblate induces a differential phase shift between the two polarizations. The quantity most commonly used for the rainfall rate computation is actually the specific differential phase shift, which is the gradient of the differential phase shift along the radial beam direction. It is even stronger correlated to the rain rate R than reflectivity Z. Hence the rain rate can be computed with a different power-law relation, which again depends on only two parameters. Furthermore, an attenuation correction is needed to adjust the loss of radar energy due to the absorption and scattering as it passes through the atmosphere. Due to natural variations of reflectivity with altitude, vertical profile of reflectivity should be corrected as well. There are some other typical radar data filtering procedures, all resulting in various hydrological products. In this work, we use the Universal Multifractal framework to analyze and to inter-compare different products of X-band radar

  2. The Role of Anthropogenic Modifications in Landscape and Hydrological Organization of Mayma River Basin

    Directory of Open Access Journals (Sweden)

    Lubenets Liliya Fedorovna

    2015-04-01

    Full Text Available The landscape and hydrological organization of the territory is a mosaic of landscapes with different modes of water yield and water balance structure. The landscape and hydrological approach becomes very important under the lack of hydrometeorological information. The factors determining the landscape and hydrological organization of the Mayma river basin, located in the Russian Altai, are considered in the present article. The classification of the landscape and hydrological complexes based on the static and dynamic indicators is performed. The set of interpretive landscape and hydrological maps has been developed. The climatic and hydrological conditions provide the excess moisture over a larger part of the basin. The lithological and hydrological background is characterized by the predominance of rocks and thin weathering products. A peculiarity of the studied area is the prevalence of transit locations that creates risks of dangerous hydrological processes in case of excessive humidity. Using the remote sensing data, the main classes of ground cover are described. A significant anthropogenic impact on the basin landscapes is observed. The analysis of soil structure shows that anthropogenically modified (mostly situated on slopes soils make up approximately 30 %. It is assumed that it leads to the deterioration of the landscape and hydrological situation in the catchment. It is concluded that the landscape and hydrological approach allows solving the problems on minimizing the hydrological objects damage and optimizing the nature management in the catchment in the context of the lack of hydrometeorological information.

  3. OHD/HL - National Weather Hydrology Laboratory

    Science.gov (United States)

    Laboratory Branches Hydrologic Software Engineering Branch (HSEB) Hydrologic Science and Modeling Branch enter or select the go button to submit request City, St Go Science Research and Collaboration Hydrology Subversion Usage Guidelines updated 11/18/2008 Other Documents Science Algorithm Description Document (doc

  4. Five Guidelines for Selecting Hydrological Signatures

    Science.gov (United States)

    McMillan, H. K.; Westerberg, I.; Branger, F.

    2017-12-01

    Hydrological signatures are index values derived from observed or modeled series of hydrological data such as rainfall, flow or soil moisture. They are designed to extract relevant information about hydrological behavior, such as to identify dominant processes, and to determine the strength, speed and spatiotemporal variability of the rainfall-runoff response. Hydrological signatures play an important role in model evaluation. They allow us to test whether particular model structures or parameter sets accurately reproduce the runoff generation processes within the watershed of interest. Most modeling studies use a selection of different signatures to capture different aspects of the catchment response, for example evaluating overall flow distribution as well as high and low flow extremes and flow timing. Such studies often choose their own set of signatures, or may borrow subsets of signatures used in multiple other works. The link between signature values and hydrological processes is not always straightforward, leading to uncertainty and variability in hydrologists' signature choices. In this presentation, we aim to encourage a more rigorous approach to hydrological signature selection, which considers the ability of signatures to represent hydrological behavior and underlying processes for the catchment and application in question. To this end, we propose a set of guidelines for selecting hydrological signatures. We describe five criteria that any hydrological signature should conform to: Identifiability, Robustness, Consistency, Representativeness, and Discriminatory Power. We describe an example of the design process for a signature, assessing possible signature designs against the guidelines above. Due to their ubiquity, we chose a signature related to the Flow Duration Curve, selecting the FDC mid-section slope as a proposed signature to quantify catchment overall behavior and flashiness. We demonstrate how assessment against each guideline could be used to

  5. Nuclear techniques in hydrology

    International Nuclear Information System (INIS)

    Moser, H.

    1976-01-01

    The nuclear techniques used in hydrology are usually tracer techniques based on the use of nuclides either intentionally introduced into, or naturally present in the water. The low concentrations of these nuclides, which must be detected in groundwater and surface water, require special measurement techniques for the concentrations of radioactive or of stable nuclides. The nuclear techniques can be used most fruitfully in conjunction with conventional methods for the solution of problems in the areas of hydrology, hydrogeology and glacier hydrology. Nuclear techniques are used in practice in the areas of prospecting for water, environment protection and engineering hydrogeology. (orig.) [de

  6. Isotope methods in hydrology

    International Nuclear Information System (INIS)

    Moser, H.; Rauert, W.

    1980-01-01

    Of the investigation methods used in hydrology, tracer methods hold a special place as they are the only ones which give direct insight into the movement and distribution processes taking place in surface and ground waters. Besides the labelling of water with salts and dyes, as in the past, in recent years the use of isotopes in hydrology, in water research and use, in ground-water protection and in hydraulic engineering has increased. This by no means replaces proven methods of hydrological investigation but tends rather to complement and expand them through inter-disciplinary cooperation. The book offers a general introduction to the application of various isotope methods to specific hydrogeological and hydrological problems. The idea is to place the hydrogeologist and the hydrologist in the position to recognize which isotope method will help him solve his particular problem or indeed, make a solution possible at all. He should also be able to recognize what the prerequisites are and what work and expenditure the use of such methods involves. May the book contribute to promoting cooperation between hydrogeologists, hydrologists, hydraulic engineers and isotope specialists, and thus supplement proven methods of investigation in hydrological research and water utilization and protection wherever the use of isotope methods proves to be of advantage. (orig./HP) [de

  7. Curricula and Syllabi in Hydrology. A Contribution to the International Hydrological Programme. UNESCO Technical Papers in Hydrology No. 22. Second Edition.

    Science.gov (United States)

    Chandra, Satish, Ed.; Mostertman, L. J., Ed.

    Hydrology is the science dealing with the earth's waters, their occurrence, circulation, and distribution, their chemical and physical properties, and their reaction with the environment. As such, hydrology is an indispensible requirement for planning in the field of water resources. Objectives for, spectrum of, and topics for education in…

  8. An assessment of basin-scale glaciological and hydrological sensitivities in the Hindu Kush-Himalaya

    NARCIS (Netherlands)

    Shea, Joseph M.; Immerzeel, Walter W.

    2016-01-01

    Glacier responses to future climate change will affect hydrology at sub-basin scales. The main goal of this study is to assess glaciological and hydrological sensitivities of sub-basins throughout the Hindu Kush-Himalaya region. We use a simple geometrical analysis based on a full glacier inventory

  9. Modeling the hydrological cycle on Mars

    Directory of Open Access Journals (Sweden)

    Ghada Machtoub

    2012-03-01

    Full Text Available The study provides a detailed analysis of the hydrological cycle on Mars simulated with a newly developed microphysical model, incorporated in a spectral Mars General Circulation Model. The modeled hydrological cycle is compared well with simulations of other global climate models. The simulated seasonal migration ofwater vapor, circulation instability, and the high degree of temporal variability of localized water vapor outbursts are shown closely consistent with recent observations. The microphysical parameterization provides a significant improvement in the modeling of ice clouds evolved over the tropics and major ancient volcanoes on Mars. The most significant difference between the simulations presented here and other GCM results is the level at which the water ice clouds are found. The model findings also support interpretation of observed thermal anomalies in the Martian tropics during northern spring and summer seasons.

  10. Specification of a test problem for HYDROCOIN [Hydrologic Code Intercomparison] Level 3 Case 2: Sensitivity analysis for deep disposal in partially saturated, fractured tuff

    International Nuclear Information System (INIS)

    Prindle, R.W.

    1987-08-01

    The international Hydrologic Code Intercomparison Project (HYDROCOIN) was formed to evaluate hydrogeologic models and computer codes and their use in performance assessment for high-level radioactive waste repositories. Three principal activities in the HYDROCOIN Project are Level 1, verification and benchmarking of hydrologic codes; Level 2, validation of hydrologic models; and Level 3, sensitivity and uncertainty analyses of the models and codes. This report presents a test case defined for the HYDROCOIN Level 3 activity to explore the feasibility of applying various sensitivity-analysis methodologies to a highly nonlinear model of isothermal, partially saturated flow through fractured tuff, and to develop modeling approaches to implement the methodologies for sensitivity analysis. These analyses involve an idealized representation of a repository sited above the water table in a layered sequence of welded and nonwelded, fractured, volcanic tuffs. The analyses suggested here include one-dimensional, steady flow; one-dimensional, nonsteady flow; and two-dimensional, steady flow. Performance measures to be used to evaluate model sensitivities are also defined; the measures are related to regulatory criteria for containment of high-level radioactive waste. 14 refs., 5 figs., 4 tabs

  11. Visualizing complex (hydrological) systems with correlation matrices

    Science.gov (United States)

    Haas, J. C.

    2016-12-01

    When trying to understand or visualize the connections of different aspects of a complex system, this often requires deeper understanding to start with, or - in the case of geo data - complicated GIS software. To our knowledge, correlation matrices have rarely been used in hydrology (e.g. Stoll et al., 2011; van Loon and Laaha, 2015), yet they do provide an interesting option for data visualization and analysis. We present a simple, python based way - using a river catchment as an example - to visualize correlations and similarities in an easy and colorful way. We apply existing and easy to use python packages from various disciplines not necessarily linked to the Earth sciences and can thus quickly show how different aquifers work or react, and identify outliers, enabling this system to also be used for quality control of large datasets. Going beyond earlier work, we add a temporal and spatial element, enabling us to visualize how a system reacts to local phenomena such as for example a river, or changes over time, by visualizing the passing of time in an animated movie. References: van Loon, A.F., Laaha, G.: Hydrological drought severity explained by climate and catchment characteristics, Journal of Hydrology 526, 3-14, 2015, Drought processes, modeling, and mitigation Stoll, S., Hendricks Franssen, H. J., Barthel, R., Kinzelbach, W.: What can we learn from long-term groundwater data to improve climate change impact studies?, Hydrology and Earth System Sciences 15(12), 3861-3875, 2011

  12. Measuring what we manage – the importance of hydrological data to water resources management

    Directory of Open Access Journals (Sweden)

    B. Stewart

    2015-04-01

    Full Text Available Water resources cannot be managed, unless we know where they are, in what quantity and quality, and how variable they are likely to be in the foreseeable future. Data from hydrological networks are used by public and private sectors for a variety of different applications. This paper discusses the value proposition behind the collection, analysis and use of hydrological data in support of these applications. The need for hydrological data and the requirements for the data are outlined, and information is provided on topics such as status of networks and data access and sharing. This paper outlines elements of the contribution by the World Meteorological Organization (WMO to hydrological data collection and covers aspects related to quality management in the collection of hydrological data, especially regarding streamflow gauging, network design and capacity building for services delivery. It should be noted that the applications which make use of hydrological data may also be significantly impacted by climate change.

  13. Hydrological Decision Support Framework (HDSF) – Initial design ...

    African Journals Online (AJOL)

    The HDSF will facilitate linking and running models within a common graphical user interface containing appropriate geographic information system and data analysis tools linked to a common database designed to store spatial and temporal data. Selected hydrological modelling framework applications and modelling ...

  14. Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia.

    Science.gov (United States)

    van Uitert, Miranda; Moerland, Perry D; Enquobahrie, Daniel A; Laivuori, Hannele; van der Post, Joris A M; Ris-Stalpers, Carrie; Afink, Gijs B

    2015-01-01

    Studies using the placental transcriptome to identify key molecules relevant for preeclampsia are hampered by a relatively small sample size. In addition, they use a variety of bioinformatics and statistical methods, making comparison of findings challenging. To generate a more robust preeclampsia gene expression signature, we performed a meta-analysis on the original data of 11 placenta RNA microarray experiments, representing 139 normotensive and 116 preeclamptic pregnancies. Microarray data were pre-processed and analyzed using standardized bioinformatics and statistical procedures and the effect sizes were combined using an inverse-variance random-effects model. Interactions between genes in the resulting gene expression signature were identified by pathway analysis (Ingenuity Pathway Analysis, Gene Set Enrichment Analysis, Graphite) and protein-protein associations (STRING). This approach has resulted in a comprehensive list of differentially expressed genes that led to a 388-gene meta-signature of preeclamptic placenta. Pathway analysis highlights the involvement of the previously identified hypoxia/HIF1A pathway in the establishment of the preeclamptic gene expression profile, while analysis of protein interaction networks indicates CREBBP/EP300 as a novel element central to the preeclamptic placental transcriptome. In addition, there is an apparent high incidence of preeclampsia in women carrying a child with a mutation in CREBBP/EP300 (Rubinstein-Taybi Syndrome). The 388-gene preeclampsia meta-signature offers a vital starting point for further studies into the relevance of these genes (in particular CREBBP/EP300) and their concomitant pathways as biomarkers or functional molecules in preeclampsia. This will result in a better understanding of the molecular basis of this disease and opens up the opportunity to develop rational therapies targeting the placental dysfunction causal to preeclampsia.

  15. Pathway Analysis of Metabolic Syndrome Using a Genome-Wide Association Study of Korea Associated Resource (KARE Cohorts

    Directory of Open Access Journals (Sweden)

    Unjin Shim

    2014-12-01

    Full Text Available Metabolic syndrome (MetS is a complex disorder related to insulin resistance, obesity, and inflammation. Genetic and environmental factors also contribute to the development of MetS, and through genome-wide association studies (GWASs, important susceptibility loci have been identified. However, GWASs focus more on individual single-nucleotide polymorphisms (SNPs, explaining only a small portion of genetic heritability. To overcome this limitation, pathway analyses are being applied to GWAS datasets. The aim of this study is to elucidate the biological pathways involved in the pathogenesis of MetS through pathway analysis. Cohort data from the Korea Associated Resource (KARE was used for analysis, which include 8,842 individuals (age, 52.2 ± 8.9 years; body mass index, 24.6 ± 3.2 kg/m2. A total of 312,121 autosomal SNPs were obtained after quality control. Pathway analysis was conducted using Meta-analysis Gene-Set Enrichment of Variant Associations (MAGENTA to discover the biological pathways associated with MetS. In the discovery phase, SNPs from chromosome 12, including rs11066280, rs2074356, and rs12229654, were associated with MetS (p < 5 × 10-6, and rs11066280 satisfied the Bonferroni-corrected cutoff (unadjusted p < 1.38 × 10-7, Bonferroni-adjusted p < 0.05. Through pathway analysis, biological pathways, including electron carrier activity, signaling by platelet-derived growth factor (PDGF, the mitogen-activated protein kinase kinase kinase cascade, PDGF binding, peroxisome proliferator-activated receptor (PPAR signaling, and DNA repair, were associated with MetS. Through pathway analysis of MetS, pathways related with PDGF, mitogen-activated protein kinase, and PPAR signaling, as well as nucleic acid binding, protein secretion, and DNA repair, were identified. Further studies will be needed to clarify the genetic pathogenesis leading to MetS.

  16. Hydrological states and the resilience of deltaic forested wetlands

    Science.gov (United States)

    Keim, R.; Allen, S. T.

    2017-12-01

    The flooding regime constitutes a set of chronic disturbances that are largely responsible for ecosystem structure. However, disturbances do not always constitute stresses to plants that survive because of adaptations to flooded conditions. We examine baldcypress-water tupelo forested wetlands in the delta of the Mississippi River as a case study in mechanisms by which hydrologic change shapes wetland ecosystem change, supported by experimental evidence from remote sensing, tree-ring and other field studies, and meta-analysis across the literature. Decreased hydrologic variability caused by water control structures has reduced the frequency of flood events that increase growth of baldcypress and favor its establishment by reducing competition from other species. Hydrologic modifications that lead to semi-permanent, stagnant flooding constitute semi-permanent disturbance that prevents regeneration of any trees, reduces growth of established trees, and reduces stand density by causing mortality of some trees. However, baldcypress trees in low-density stands appear to be generally adapted for long-term survival in stagnant conditions. Thus, initial decreases in stand density after impoundment do not necessarily portend continued conversion away from forest because reduced inter-tree competition is a negative feedback on mortality. Overall, a natural hydrologic regime with high variability in riverine flooding favors denser stands with greater diversity of tree species, and the present, controlled hydrologic regime that has largely eliminated riverine flooding favors open stands. Sea-level rise will increase salinity that quickly leads to forest conversion to marsh, but will also increase stagnant, freshwater flooding further inland. These drivers of hydrologic change reduce carbon assimilation by forests, both by reduced stand-level productivity and decreased forested area.

  17. Analysis of Membrane Protein Topology in the Plant Secretory Pathway.

    Science.gov (United States)

    Guo, Jinya; Miao, Yansong; Cai, Yi

    2017-01-01

    Topology of membrane proteins provides important information for the understanding of protein function and intermolecular associations. Integrate membrane proteins are generally transported from endoplasmic reticulum (ER) to Golgi and downstream compartments in the plant secretory pathway. Here, we describe a simple method to study membrane protein topology along the plant secretory pathway by transiently coexpressing a fluorescent protein (XFP)-tagged membrane protein and an ER export inhibitor protein, ARF1 (T31N), in tobacco BY-2 protoplast. By fractionation, microsome isolation, and trypsin digestion, membrane protein topology could be easily detected by either direct confocal microscopy imaging or western-blot analysis using specific XFP antibodies. A similar strategy in determining membrane protein topology could be widely adopted and applied to protein analysis in a broad range of eukaryotic systems, including yeast cells and mammalian cells.

  18. A functional genomics approach using metabolomics and in silico pathway analysis

    DEFF Research Database (Denmark)

    Förster, Jochen; Gombert, Andreas Karoly; Nielsen, Jens

    2002-01-01

    analysis techniques and changes in the genotype will in many cases lead to different metabolite profiles. Here, a theoretical framework that may be applied to identify the function of orphan genes is presented. The approach is based on a combination of metabolome analysis combined with in silico pathway...

  19. A coupled distributed hydrological-stability analysis on a terraced slope of Valtellina (northern Italy)

    Science.gov (United States)

    Camera, C.; Apuani, T.; Masetti, M.

    2013-02-01

    The aim of this work was to understand and reproduce the hydrological dynamics of a slope, which was terraced using dry-stone retaining walls and its response to these processes in terms of stability at the slope scale. The slope studied is located in Valtellina (northern Italy), near the village of Tresenda, and in the last 30 yr has experienced several soil slip/debris flow events. In 1983 alone, such events caused the death of 18 people. Direct observation of the events of 1983 enabled the principal triggering cause of these events to be recognized in the formation of an overpressure at the base of a dry-stone wall, which caused its failure. To perform the analyses it is necessary to include the presence of dry-stone walls, considering the importance they have in influencing hydrological and geotechnical processes at the slope scale. This requires a very high resolution DEM (1 m × 1 m because the walls are from 0.60 m to 1.0 m wide) that has been appositely derived. A hydrogeological raster-based model, which takes into account both the unsaturated and saturated flux components, was applied. This was able to identify preferential infiltration zones and was rather precise in the prediction of maximum groundwater levels, providing valid input for the distributed stability analysis. Results of the hydrogeological model were used for the successive stability analysis. Sections of terrace were identified from the downslope base of a retaining wall to the top of the next downslope retaining wall. Within each section a global method of equilibrium was applied to determine its safety factor. The stability model showed a general tendency to overestimate the amount of unstable areas. An investigation of the causes of this unexpected behavior was, therefore, also performed in order to progressively improve the reliability of the model.

  20. Hydrological Analysis for Inflow Forecasting into Temengor Dam

    Science.gov (United States)

    Najid, MI; Sidek, LM; Hidayah, B.; Roseli, ZA

    2016-03-01

    These days, natural disaster such as flood is the main concern for hydrologists. One of solutions in understanding the reason of flood is by prediction of the event sooner than normal occurrence. One of the criteria is lead time or travel time that is important in the study of fresh waters and flood events. Therefore, estimation of lead or travel time for flood event can be beneficial primary information. The objective of this study is to estimate the lead time or travel time for outlet of Temengor dam in Malaysia. Tenaga Nasional Berhad (TNB) Sungai Perak dam operation has the main contribution on decision support for early water released and flood warning to authorities and locals resident for in the down streams area. For this study, hydrological analysis carried out will help to determine which years that give more rainfall contribution into the reservoir. Rainfall contribution of reservoir help to understanding rainfall distribution and peak discharge on that period. It also help for calibration of forecasting model system for better accuracy of flood hydrograph. There may be various methods to determine the rainfall contribution of catchment. The result has shown that, the rainfall contribution for Temengor catchment, is more on November in each year which is the monsoon season in Malaysia. TNB dam operational decision support systems can prepare and be more aware at this time for flood control and flood mitigation.

  1. Hydrologic Sub-basins of Greenland

    Data.gov (United States)

    National Aeronautics and Space Administration — The Hydrologic Sub-basins of Greenland data set contains Geographic Information System (GIS) polygon shapefiles that include 293 hydrologic sub-basins of the...

  2. Combined effects of climate models, hydrological model structures and land use scenarios on hydrological impacts of climate change

    DEFF Research Database (Denmark)

    Karlsson, Ida B.; Sonnenborg, Torben O.; Refsgaard, Jens Christian

    2016-01-01

    Impact studies of the hydrological response of future climate change are important for the water authorities when risk assessment, management and adaptation to a changing climate are carried out. The objective of this study was to model the combined effect of land use and climate changes...... use scenarios. The results revealed that even though the hydrological models all showed similar performance during calibration, the mean discharge response to climate change varied up to 30%, and the variations were even higher for extreme events (1th and 99th percentile). Land use changes appeared...... to cause little change in mean hydrological responses and little variation between hydrological models. Differences in hydrological model responses to land use were, however, significant for extremes due to dissimilarities in hydrological model structure and process equations. The climate model choice...

  3. Development of isotope hydrology technology in China

    International Nuclear Information System (INIS)

    Li Zhangsu

    1988-01-01

    The development of isotope hydrology technology in China is described. The isotope technology provides an independent approach for solving hydrological problems. Isotope hydrology is applied in three ways: the use of change in environmental isotopic composition of water (especially used in water resources exploitation), the use of artificial radioactive tracers and the use of redioisotope instruments. Many important achievements have been obtained in application of isotopic hydrology technology. For the sake of promoting rapid development of isotope hydrology the topics on management, technology and others are commented

  4. Pathways to Medical Home Recognition: A Qualitative Comparative Analysis of the PCMH Transformation Process.

    Science.gov (United States)

    Mendel, Peter; Chen, Emily K; Green, Harold D; Armstrong, Courtney; Timbie, Justin W; Kress, Amii M; Friedberg, Mark W; Kahn, Katherine L

    2017-12-15

    To understand the process of practice transformation by identifying pathways for attaining patient-centered medical home (PCMH) recognition. The CMS Federally Qualified Health Center (FQHC) Advanced Primary Care Practice Demonstration was designed to help FQHCs achieve NCQA Level 3 PCMH recognition and improve patient outcomes. We used a stratified random sample of 20 (out of 503) participating sites for this analysis. We developed a conceptual model of structural, cultural, and implementation factors affecting PCMH transformation based on literature and initial qualitative interview themes. We then used conventional cross-case analysis, followed by qualitative comparative analysis (QCA), a cross-case method based on Boolean logic algorithms, to systematically identify pathways (i.e., combinations of factors) associated with attaining-or not attaining-Level 3 recognition. Site-level indicators were derived from semistructured interviews with site leaders at two points in time (mid- and late-implementation) and administrative data collected prior to and during the demonstration period. The QCA results identified five distinct pathways to attaining PCMH recognition and four distinct pathways to not attaining recognition by the end of the demonstration. Across these pathways, one condition (change leader capacity) was common to all pathways for attaining recognition, and another (previous improvement or recognition experience) was absent in all pathways for not attaining recognition. In general, sites could compensate for deficiencies in one factor with capacity in others, but they needed a threshold of strengths in cultural and implementation factors to attain PCMH recognition. Future efforts at primary care transformation should take into account multiple pathways sites may pursue. Sites should be assessed on key cultural and implementation factors, in addition to structural components, in order to differentiate interventions and technical assistance. © Health

  5. Climate change impact assessment on the hydrological regime of the Kaligandaki Basin, Nepal.

    Science.gov (United States)

    Bajracharya, Ajay Ratna; Bajracharya, Sagar Ratna; Shrestha, Arun Bhakta; Maharjan, Sudan Bikash

    2018-06-01

    The Hindu Kush-Himalayan region is an important global freshwater resource. The hydrological regime of the region is vulnerable to climatic variations, especially precipitation and temperature. In our study, we modelled the impact of climate change on the water balance and hydrological regime of the snow dominated Kaligandaki Basin. The Soil and Water Assessment Tool (SWAT) was used for a future projection of changes in the hydrological regime of the Kaligandaki basin based on Representative Concentration Pathways Scenarios (RCP 4.5 and RCP 8.5) of ensemble downscaled Coupled Model Intercomparison Project's (CMIP5) General Circulation Model (GCM) outputs. It is predicted to be a rise in the average annual temperature of over 4°C, and an increase in the average annual precipitation of over 26% by the end of the 21st century under RCP 8.5 scenario. Modeling results show these will lead to significant changes in the basin's water balance and hydrological regime. In particular, a 50% increase in discharge is expected at the outlet of the basin. Snowmelt contribution will largely be affected by climate change, and it is projected to increase by 90% by 2090.Water availability in the basin is not likely to decrease during the 21st century. The study demonstrates that the important water balance components of snowmelt, evapotranspiration, and water yield at higher elevations in the upper and middle sub-basins of the Kaligandaki Basin will be most affected by the increasing temperatures and precipitation. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

  6. Constraint-based modeling and kinetic analysis of the Smad dependent TGF-beta signaling pathway.

    Directory of Open Access Journals (Sweden)

    Zhike Zi

    Full Text Available BACKGROUND: Investigation of dynamics and regulation of the TGF-beta signaling pathway is central to the understanding of complex cellular processes such as growth, apoptosis, and differentiation. In this study, we aim at using systems biology approach to provide dynamic analysis on this pathway. METHODOLOGY/PRINCIPAL FINDINGS: We proposed a constraint-based modeling method to build a comprehensive mathematical model for the Smad dependent TGF-beta signaling pathway by fitting the experimental data and incorporating the qualitative constraints from the experimental analysis. The performance of the model generated by constraint-based modeling method is significantly improved compared to the model obtained by only fitting the quantitative data. The model agrees well with the experimental analysis of TGF-beta pathway, such as the time course of nuclear phosphorylated Smad, the subcellular location of Smad and signal response of Smad phosphorylation to different doses of TGF-beta. CONCLUSIONS/SIGNIFICANCE: The simulation results indicate that the signal response to TGF-beta is regulated by the balance between clathrin dependent endocytosis and non-clathrin mediated endocytosis. This model is useful to be built upon as new precise experimental data are emerging. The constraint-based modeling method can also be applied to quantitative modeling of other signaling pathways.

  7. Fundamentals of watershed hydrology

    Science.gov (United States)

    Pamela J. Edwards; Karl W.J. Williard; Jon E. Schoonover

    2015-01-01

    This is a primer about hydrology, the science of water. Watersheds are the basic land unit for water resource management and their delineation, importance, and variation are explained and illustrated. The hydrologic cycle and its components (precipitation, evaporation, transpiration, soil water, groundwater, and streamflow) which collectively provide a foundation for...

  8. Freshwater Ecosystem Services and Hydrologic Alteration in the Lower Mississippi River Basin

    Science.gov (United States)

    Yasarer, L.; Taylor, J.; Rigby, J.; Locke, M. A.

    2017-12-01

    Flowing freshwater ecosystems provide a variety of essential ecosystem services including: consumptive water for domestic, industrial, and agricultural use; transportation of goods; maintenance of aquatic biodiversity and water quality; and recreation. However, freshwater ecosystem services can oftentimes be at odds with each other. For example, the over-consumption of water for agricultural production or domestic use may alter hydrologic patterns and diminish the ability of flowing waters to sustain healthy aquatic ecosystems. In the Lower Mississippi River Basin there has been a substantial increase in groundwater-irrigated cropland acreage over the past several decades and subsequent declines in regional aquifer levels. Changes in aquifer levels potentially impact surface water hydrology throughout the region. This study tests the hypothesis that flowing water systems in lowland agricultural watersheds within the Lower Mississippi River Basin have greater hydrologic alteration compared to upland non-agricultural watersheds, particularly with declines in base flow and an increase in extreme low flows. Long-term streamflow records from USGS gauges located in predominantly agricultural and non-agricultural watersheds in Arkansas, Louisiana, Mississippi, and Tennessee were evaluated from 1969 -2016 using the Indicators of Hydrologic Alteration (IHA) software. Preliminary results from 8 non-agricultural and 5 agricultural watersheds demonstrate a substantial decline in base flow in the agricultural watersheds, which is not apparent in the non-agricultural watersheds. This exploratory study will analyze the trade-off between gains in agricultural productivity and changes in ecohydrological indicators over the last half century in diverse watersheds across the Lower Mississippi River Basin. By quantifying the changes in ecosystem services provided by flowing waters in the past, we can inform sustainable management pathways to better balance services in the future.

  9. Uncertainty in hydrological change modelling

    DEFF Research Database (Denmark)

    Seaby, Lauren Paige

    applied at the grid scale. Flux and state hydrological outputs which integrate responses over time and space showed more sensitivity to precipitation mean spatial biases and less so on extremes. In the investigated catchments, the projected change of groundwater levels and basin discharge between current......Hydrological change modelling methodologies generally use climate models outputs to force hydrological simulations under changed conditions. There are nested sources of uncertainty throughout this methodology, including choice of climate model and subsequent bias correction methods. This Ph.......D. study evaluates the uncertainty of the impact of climate change in hydrological simulations given multiple climate models and bias correction methods of varying complexity. Three distribution based scaling methods (DBS) were developed and benchmarked against a more simplistic and commonly used delta...

  10. Genome wide expression analysis in HPV16 Cervical Cancer: identification of altered metabolic pathways

    Directory of Open Access Journals (Sweden)

    Salcedo Mauricio

    2007-09-01

    Full Text Available Abstract Background Cervical carcinoma (CC is a leading cause of death among women worldwide. Human papilloma virus (HPV is a major etiological factor in CC and HPV 16 is the more frequent viral type present. Our aim was to characterize metabolic pathways altered in HPV 16 tumor samples by means of transcriptome wide analysis and bioinformatics tools for visualizing expression data in the context of KEGG biological pathways. Results We found 2,067 genes significantly up or down-modulated (at least 2-fold in tumor clinical samples compared to normal tissues, representing ~3.7% of analyzed genes. Cervical carcinoma was associated with an important up-regulation of Wnt signaling pathway, which was validated by in situ hybridization in clinical samples. Other up-regulated pathways were those of calcium signaling and MAPK signaling, as well as cell cycle-related genes. There was down-regulation of focal adhesion, TGF-β signaling, among other metabolic pathways. Conclusion This analysis of HPV 16 tumors transcriptome could be useful for the identification of genes and molecular pathways involved in the pathogenesis of cervical carcinoma. Understanding the possible role of these proteins in the pathogenesis of CC deserves further studies.

  11. Hydrologic impact of urbanization with extensive stormwater infiltration

    DEFF Research Database (Denmark)

    Locatelli, Luca; Mark, Ole; Mikkelsen, Peter Steen

    2017-01-01

    This paper presents a novel modeling analysis of a 40-year-long dataset to examine the impact of urbanization, with widespread stormwater infiltration, on groundwater levels and the water balance of a watershed. A dataset on the hydrologic impact of urbanization with extensive stormwater...

  12. From engineering hydrology to Earth system science: milestones in the transformation of hydrologic science

    Directory of Open Access Journals (Sweden)

    M. Sivapalan

    2018-03-01

    Full Text Available Hydrology has undergone almost transformative changes over the past 50 years. Huge strides have been made in the transition from early empirical approaches to rigorous approaches based on the fluid mechanics of water movement on and below the land surface. However, progress has been hampered by problems posed by the presence of heterogeneity, including subsurface heterogeneity present at all scales. The inability to measure or map the heterogeneity everywhere prevented the development of balance equations and associated closure relations at the scales of interest, and has led to the virtual impasse we are presently in, in terms of development of physically based models needed for hydrologic predictions. An alternative to the mapping of heterogeneity everywhere is a new Earth system science view, which sees the heterogeneity as the end result of co-evolutionary hydrological, geomorphological, ecological, and pedological processes, each operating at a different rate, which help to shape the landscapes that we find in nature, including the heterogeneity that we do not readily see. The expectation is that instead of specifying exact details of the heterogeneity in our models, we can replace it (without loss of information with the ecosystem function that they perform. Guided by this new Earth system science perspective, development of hydrologic science is now addressing new questions using novel holistic co-evolutionary approaches as opposed to the physical, fluid mechanics based reductionist approaches that we inherited from the recent past. In the emergent Anthropocene, the co-evolutionary view has expanded further to involve interactions and feedbacks with human-social processes as well. In this paper, I present my own perspective of key milestones in the transformation of hydrologic science from engineering hydrology to Earth system science, drawn from the work of several students and colleagues of mine, and discuss their implication for

  13. From engineering hydrology to Earth system science: milestones in the transformation of hydrologic science

    Science.gov (United States)

    Sivapalan, Murugesu

    2018-03-01

    Hydrology has undergone almost transformative changes over the past 50 years. Huge strides have been made in the transition from early empirical approaches to rigorous approaches based on the fluid mechanics of water movement on and below the land surface. However, progress has been hampered by problems posed by the presence of heterogeneity, including subsurface heterogeneity present at all scales. The inability to measure or map the heterogeneity everywhere prevented the development of balance equations and associated closure relations at the scales of interest, and has led to the virtual impasse we are presently in, in terms of development of physically based models needed for hydrologic predictions. An alternative to the mapping of heterogeneity everywhere is a new Earth system science view, which sees the heterogeneity as the end result of co-evolutionary hydrological, geomorphological, ecological, and pedological processes, each operating at a different rate, which help to shape the landscapes that we find in nature, including the heterogeneity that we do not readily see. The expectation is that instead of specifying exact details of the heterogeneity in our models, we can replace it (without loss of information) with the ecosystem function that they perform. Guided by this new Earth system science perspective, development of hydrologic science is now addressing new questions using novel holistic co-evolutionary approaches as opposed to the physical, fluid mechanics based reductionist approaches that we inherited from the recent past. In the emergent Anthropocene, the co-evolutionary view has expanded further to involve interactions and feedbacks with human-social processes as well. In this paper, I present my own perspective of key milestones in the transformation of hydrologic science from engineering hydrology to Earth system science, drawn from the work of several students and colleagues of mine, and discuss their implication for hydrologic observations

  14. Response of terrestrial hydrology to climate and permafrost change for the 21st century as simulated by JSBACH offline experiments

    Science.gov (United States)

    Blome, Tanja; Hagemann, Stefan; Ekici, Altug; Beer, Christian

    2015-04-01

    Permafrost (PF) or perennially frozen ground is an important part of the terrestrial cryosphere; roughly one quarter of Earth's land surface is underlain by permafrost. As it is a thermal phenomenon, its characteristics are highly dependent on climatic factors. The impact of the currently observed warming, which is projected to persist during the coming decades due to anthropogenic CO2 input, certainly has effects for the vast permafrost areas of the high northern latitudes. The quantification of these effects, however, is scientifically still an open question. This is partly due to the complexity of the system, where several feedbacks are interacting between land and atmosphere, sometimes counterbalancing each other. In terms of hydrology, changes in permafrost characteristics may lead to contradicting effects. E.g., observations show that the deepening of the Active Layer (AL) can both decrease and increase soil moisture, depending on the specific conditions. For the investigation of hydrological changes in response to climatic and thus PF change, it is therefore necessary to use a model. To address this response of the terrestrial hydrology to projected changes for the 21st century, the global land surface model of the Max-Planck-Institute for Meteorology, JSBACH, was used to simulate several future climate scenarios. JSBACH recently has been equipped with important physical PF processes, such as the effects of freezing and thawing of soil water for both energy and water cycles, thermal properties depending on soil water and ice contents, and soil moisture movement being influenced by the presence of soil ice. In order to identify hydrological impacts originating solely in the physical forcing, experiments were conducted in an offline mode and with fixed vegetation cover. Feedback mechanisms, e.g. via the carbon cycle, were thus excluded. The uncertainty range arising through different Representative Concentration Pathways (RCPs) as well as through different

  15. HYDROLOGY, LAMAR COUNTY, GEORGIA, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  16. HYDROLOGY, GEORGETOWN COUNTY, SC, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  17. HYDROLOGY, IONIA COUNTY, MI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  18. HYDROLOGY, WHITLEY COUNTY, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  19. HYDROLOGY, TUSCOLA COUNTY, MI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  20. HYDROLOGY, JEFFERSON COUNTY, WI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  1. HYDROLOGY, DODGE COUNTY, WI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  2. HYDROLOGY, WASHINGTON COUNTY, WI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  3. HYDROLOGY, DUNN COUNTY, WI, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  4. HYDROLOGY, yakima County, WA, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  5. HYDROLOGY, LEVY COUNTY, FL, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  6. HYDROLOGY, WASHINGTON COUNTY, FL, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  7. HYDROLOGY, HAMILTON COUNTY, FL, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  8. HYDROLOGY, LIBERTY COUNTY, FL, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  9. HYDROLOGY, BALLARD COUNTY, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  10. HYDROLOGY, Richland County, ND, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  11. HYDROLOGY, Grant County, SD, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  12. HYDROLOGY, MONITEAU COUNTY, MISSOURI USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  13. HYDROLOGY, IRON COUNTY, UTAH, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  14. HYDROLOGY, Bourbon COUNTY, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  15. HYDROLOGY, MADISON COUNTY, FL, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  16. HYDROLOGY, RICE COUNTY, MN, USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  17. HYDROLOGY, LAUREL COUNTY, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  18. HYDROLOGY, MADISON COUNTY, ALABAMA USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  19. HYDROLOGY, SIMPSON COUNTY, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  20. HYDROLOGY, STORY COUNTY, IOWA USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  1. Proliferation Resistance: Acquisition/Diversion Pathway Analysis for the DUPIC Fuel Cycle

    International Nuclear Information System (INIS)

    Ko, Won Il; Chang, Hong Lae; Song, Dae Yong; Lee, Ho Hee; Kwon, Eun Ha; Jeong, Chang Joon; Kim, Ho Dong

    2009-07-01

    Within the International Project on Innovative Nuclear Reactors and Fuel Cycles (INPRO), a methodology for evaluating proliferation resistance (INPRO PR methodology) has been developed. However, it remains to develop the methodology to evaluate User Requirements (UR) 4 regarding multiplicity and robustness of barriers against proliferation - innovative nuclear energy systems should incorporate multiple proliferation resistance features and measures. Since this requires an acquisition/diversion pathway analysis, this report describes a systematic approach developed for the identification and analysis of pathways for the acquisition of weapons-usable nuclear material using the DUPIC fuel cycle system. At the first step, the objectives of the proliferation were identified, including the quality and quantity of the material, the time required to acquire the material for the proliferation, thr capability of the potential proliferant country, etc. At the second step, the possible strategies, which the potential proliferant country could adopt, were identified: undeclared removal of nuclear material from the fuel cycle facilities; and further treatment of the diverted nuclear materials needed to acquire weapons-usable materials. At the final step, a systematic approach to select the plausible pathways for the acquisition/diversion of nuclear material during the whole fuel cycle has been developed. The coarse material diversion pathways for the DUPIC fuel cycle and the approach developed was reviewed and discussed at the experts meeting at the IAEA for its appropriateness and comprehensiveness

  2. Hydrologic applications of weather radar

    Science.gov (United States)

    Seo, Dong-Jun; Habib, Emad; Andrieu, Hervé; Morin, Efrat

    2015-12-01

    By providing high-resolution quantitative precipitation information (QPI), weather radars have revolutionized hydrology in the last two decades. With the aid of GIS technology, radar-based quantitative precipitation estimates (QPE) have enabled routine high-resolution hydrologic modeling in many parts of the world. Given the ever-increasing need for higher-resolution hydrologic and water resources information for a wide range of applications, one may expect that the use of weather radar will only grow. Despite the tremendous progress, a number of significant scientific, technological and engineering challenges remain to realize its potential. New challenges are also emerging as new areas of applications are discovered, explored and pursued. The purpose of this special issue is to provide the readership with some of the latest advances, lessons learned, experiences gained, and science issues and challenges related to hydrologic applications of weather radar. The special issue features 20 contributions on various topics which reflect the increasing diversity as well as the areas of focus in radar hydrology today. The contributions may be grouped as follows:

  3. An analysis of historic and projected climate scenarios in the Western United States using hydrologic landscape classification.

    Science.gov (United States)

    : Identifying areas of similar hydrology within the United States and its regions (hydrologic landscapes - HLs) is an active area of research. HLs are being used to construct spatially distributed assessments of variability in streamflow and climatic response in Oregon, Alaska, a...

  4. iTree-Hydro: Snow hydrology update for the urban forest hydrology model

    Science.gov (United States)

    Yang Yang; Theodore A. Endreny; David J. Nowak

    2011-01-01

    This article presents snow hydrology updates made to iTree-Hydro, previously called the Urban Forest Effects—Hydrology model. iTree-Hydro Version 1 was a warm climate model developed by the USDA Forest Service to provide a process-based planning tool with robust water quantity and quality predictions given data limitations common to most urban areas. Cold climate...

  5. Changes in water availability in the Upper Blue Nile basin under the representative concentration pathways scenario

    NARCIS (Netherlands)

    Haile, Alemseged Tamiru; Akawka, Ashenafi Lekasa; Berhanu, Beza; Rientjes, T.H.M.

    2017-01-01

    Climatic and hydrological changes will likely be intensified in the Upper Blue Nile (UBN) basin by the effects of global warming. The extent of such effects for representative concentration pathways (RCP) climate scenarios is unknown. We evaluated projected changes in rainfall and evapotranspiration

  6. Mountaintop Removal Mining and Catchment Hydrology

    Directory of Open Access Journals (Sweden)

    Andrew J. Miller

    2014-03-01

    Full Text Available Mountaintop mining and valley fill (MTM/VF coal extraction, practiced in the Central Appalachian region, represents a dramatic landscape-scale disturbance. MTM operations remove as much as 300 m of rock, soil, and vegetation from ridge tops to access deep coal seams and much of this material is placed in adjacent headwater streams altering landcover, drainage network, and topography. In spite of its scale, extent, and potential for continued use, the effects MTM/VF on catchment hydrology is poorly understood. Previous reviews focus on water quality and ecosystem health impacts, but little is known about how MTM/VF affects hydrology, particularly the movement and storage of water, hence the hydrologic processes that ultimately control flood generation, water chemistry, and biology. This paper aggregates the existing knowledge about the hydrologic impacts of MTM/VF to identify areas where further scientific investigation is needed. While contemporary surface mining generally increases peak and total runoff, the limited MTM/VF studies reveal significant variability in hydrologic response. Significant knowledge gaps relate to limited understanding of hydrologic processes in these systems. Until the hydrologic impact of this practice is better understood, efforts to reduce water quantity and quality problems and ecosystem degradation will be difficult to achieve.

  7. Proving the ecosystem value through hydrological modelling

    International Nuclear Information System (INIS)

    Dorner, W; Spachinger, K; Metzka, R; Porter, M

    2008-01-01

    Ecosystems provide valuable functions. Also natural floodplains and river structures offer different types of ecosystem functions such as habitat function, recreational area and natural detention. From an economic stand point the loss (or rehabilitation) of these natural systems and their provided natural services can be valued as a damage (or benefit). Consequently these natural goods and services must be economically valued in project assessments e.g. cost-benefit-analysis or cost comparison. Especially in smaller catchments and river systems exists significant evidence that natural flood detention reduces flood risk and contributes to flood protection. Several research projects evaluated the mitigating effect of land use, river training and the loss of natural flood plains on development, peak and volume of floods. The presented project analysis the hypothesis that ignoring natural detention and hydrological ecosystem services could result in economically inefficient solutions for flood protection and mitigation. In test areas, subcatchments of the Danube in Germany, a combination of hydrological and hydrodynamic models with economic evaluation techniques was applied. Different forms of land use, river structure and flood protection measures were assed and compared from a hydrological and economic point of view. A hydrodynamic model was used to simulate flows to assess the extent of flood affected areas and damages to buildings and infrastructure as well as to investigate the impacts of levees and river structure on a local scale. These model results provided the basis for an economic assessment. Different economic valuation techniques, such as flood damage functions, cost comparison method and substation-approach were used to compare the outcomes of different hydrological scenarios from an economic point of view and value the ecosystem service. The results give significant evidence that natural detention must be evaluated as part of flood mitigation projects

  8. Embedding complex hydrology in the climate system - towards fully coupled climate-hydrology models

    DEFF Research Database (Denmark)

    Butts, M.; Rasmussen, S.H.; Ridler, M.

    2013-01-01

    Motivated by the need to develop better tools to understand the impact of future management and climate change on water resources, we present a set of studies with the overall aim of developing a fully dynamic coupling between a comprehensive hydrological model, MIKE SHE, and a regional climate...... distributed parameters using satellite remote sensing. Secondly, field data are used to investigate the effects of model resolution and parameter scales for use in a coupled model. Finally, the development of the fully coupled climate-hydrology model is described and some of the challenges associated...... with coupling models for hydrological processes on sub-grid scales of the regional climate model are presented....

  9. Pathway-based factor analysis of gene expression data produces highly heritable phenotypes that associate with age.

    Science.gov (United States)

    Anand Brown, Andrew; Ding, Zhihao; Viñuela, Ana; Glass, Dan; Parts, Leopold; Spector, Tim; Winn, John; Durbin, Richard

    2015-03-09

    Statistical factor analysis methods have previously been used to remove noise components from high-dimensional data prior to genetic association mapping and, in a guided fashion, to summarize biologically relevant sources of variation. Here, we show how the derived factors summarizing pathway expression can be used to analyze the relationships between expression, heritability, and aging. We used skin gene expression data from 647 twins from the MuTHER Consortium and applied factor analysis to concisely summarize patterns of gene expression to remove broad confounding influences and to produce concise pathway-level phenotypes. We derived 930 "pathway phenotypes" that summarized patterns of variation across 186 KEGG pathways (five phenotypes per pathway). We identified 69 significant associations of age with phenotype from 57 distinct KEGG pathways at a stringent Bonferroni threshold ([Formula: see text]). These phenotypes are more heritable ([Formula: see text]) than gene expression levels. On average, expression levels of 16% of genes within these pathways are associated with age. Several significant pathways relate to metabolizing sugars and fatty acids; others relate to insulin signaling. We have demonstrated that factor analysis methods combined with biological knowledge can produce more reliable phenotypes with less stochastic noise than the individual gene expression levels, which increases our power to discover biologically relevant associations. These phenotypes could also be applied to discover associations with other environmental factors. Copyright © 2015 Brown et al.

  10. Integrating eQTL data with GWAS summary statistics in pathway-based analysis with application to schizophrenia.

    Science.gov (United States)

    Wu, Chong; Pan, Wei

    2018-04-01

    Many genetic variants affect complex traits through gene expression, which can be exploited to boost statistical power and enhance interpretation in genome-wide association studies (GWASs) as demonstrated by the transcriptome-wide association study (TWAS) approach. Furthermore, due to polygenic inheritance, a complex trait is often affected by multiple genes with similar functions as annotated in gene pathways. Here, we extend TWAS from gene-based analysis to pathway-based analysis: we integrate public pathway collections, expression quantitative trait locus (eQTL) data and GWAS summary association statistics (or GWAS individual-level data) to identify gene pathways associated with complex traits. The basic idea is to weight the SNPs of the genes in a pathway based on their estimated cis-effects on gene expression, then adaptively test for association of the pathway with a GWAS trait by effectively aggregating possibly weak association signals across the genes in the pathway. The P values can be calculated analytically and thus fast. We applied our proposed test with the KEGG and GO pathways to two schizophrenia (SCZ) GWAS summary association data sets, denoted by SCZ1 and SCZ2 with about 20,000 and 150,000 subjects, respectively. Most of the significant pathways identified by analyzing the SCZ1 data were reproduced by the SCZ2 data. Importantly, we identified 15 novel pathways associated with SCZ, such as GABA receptor complex (GO:1902710), which could not be uncovered by the standard single SNP-based analysis or gene-based TWAS. The newly identified pathways may help us gain insights into the biological mechanism underlying SCZ. Our results showcase the power of incorporating gene expression information and gene functional annotations into pathway-based association testing for GWAS. © 2018 WILEY PERIODICALS, INC.

  11. Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia.

    Directory of Open Access Journals (Sweden)

    Miranda van Uitert

    Full Text Available Studies using the placental transcriptome to identify key molecules relevant for preeclampsia are hampered by a relatively small sample size. In addition, they use a variety of bioinformatics and statistical methods, making comparison of findings challenging. To generate a more robust preeclampsia gene expression signature, we performed a meta-analysis on the original data of 11 placenta RNA microarray experiments, representing 139 normotensive and 116 preeclamptic pregnancies. Microarray data were pre-processed and analyzed using standardized bioinformatics and statistical procedures and the effect sizes were combined using an inverse-variance random-effects model. Interactions between genes in the resulting gene expression signature were identified by pathway analysis (Ingenuity Pathway Analysis, Gene Set Enrichment Analysis, Graphite and protein-protein associations (STRING. This approach has resulted in a comprehensive list of differentially expressed genes that led to a 388-gene meta-signature of preeclamptic placenta. Pathway analysis highlights the involvement of the previously identified hypoxia/HIF1A pathway in the establishment of the preeclamptic gene expression profile, while analysis of protein interaction networks indicates CREBBP/EP300 as a novel element central to the preeclamptic placental transcriptome. In addition, there is an apparent high incidence of preeclampsia in women carrying a child with a mutation in CREBBP/EP300 (Rubinstein-Taybi Syndrome. The 388-gene preeclampsia meta-signature offers a vital starting point for further studies into the relevance of these genes (in particular CREBBP/EP300 and their concomitant pathways as biomarkers or functional molecules in preeclampsia. This will result in a better understanding of the molecular basis of this disease and opens up the opportunity to develop rational therapies targeting the placental dysfunction causal to preeclampsia.

  12. Relating climate change signals and physiographic catchment properties to clustered hydrological response types

    Directory of Open Access Journals (Sweden)

    N. Köplin

    2012-07-01

    Full Text Available We propose an approach to reduce a comprehensive set of 186 mesoscale catchments in Switzerland to fewer response types to climate change and to name sensitive regions as well as catchment characteristics that govern hydrological change. We classified the hydrological responses of our study catchments through an agglomerative-hierarchical cluster analysis, and we related the dominant explanatory variables, i.e. the determining catchment properties and climate change signals, to the catchments' hydrological responses by means of redundancy analysis. All clusters except for one exhibit clearly decreasing summer runoff and increasing winter runoff. This seasonal shift was observed for the near future period (2025–2046 but is particularly obvious in the far future period (2074–2095. Within a certain elevation range (between 1000 and 2500 m a.s.l., the hydrological change is basically a function of elevation, because the latter governs the dominant hydro-climatological processes associated with temperature, e.g. the ratio of liquid to solid precipitation and snow melt processes. For catchments below the stated range, hydrological change is mainly a function of precipitation change, which is not as pronounced as the temperature signal is. Future impact studies in Switzerland can be conducted on a reduced sample of catchments representing the sensitive regions or covering a range of altitudes.

  13. Initial hydrological modelling to assess impacts of different land uses on process hydrology in a small-scale semi-arid catchment in the Western Cape Province, South Africa

    CSIR Research Space (South Africa)

    Steudel, T

    2010-06-01

    Full Text Available in those areas. GIS DATA ? highly precise GPS field measurements and contour line information for digital elevation model (DEM) generation and watershed derivation ? different raster layers (spatial resolution = 7.6 m) containing plot specific...2000 is capable of representing the hydrological conditions within such a small- scale catchment (Fig. 5, Fig 6) OUTLOOK ? J2000 can be used for a detailed analysis of the individual hydrological components affected by land use change ? further...

  14. Bayesian estimation of parameters in a regional hydrological model

    Directory of Open Access Journals (Sweden)

    K. Engeland

    2002-01-01

    Full Text Available This study evaluates the applicability of the distributed, process-oriented Ecomag model for prediction of daily streamflow in ungauged basins. The Ecomag model is applied as a regional model to nine catchments in the NOPEX area, using Bayesian statistics to estimate the posterior distribution of the model parameters conditioned on the observed streamflow. The distribution is calculated by Markov Chain Monte Carlo (MCMC analysis. The Bayesian method requires formulation of a likelihood function for the parameters and three alternative formulations are used. The first is a subjectively chosen objective function that describes the goodness of fit between the simulated and observed streamflow, as defined in the GLUE framework. The second and third formulations are more statistically correct likelihood models that describe the simulation errors. The full statistical likelihood model describes the simulation errors as an AR(1 process, whereas the simple model excludes the auto-regressive part. The statistical parameters depend on the catchments and the hydrological processes and the statistical and the hydrological parameters are estimated simultaneously. The results show that the simple likelihood model gives the most robust parameter estimates. The simulation error may be explained to a large extent by the catchment characteristics and climatic conditions, so it is possible to transfer knowledge about them to ungauged catchments. The statistical models for the simulation errors indicate that structural errors in the model are more important than parameter uncertainties. Keywords: regional hydrological model, model uncertainty, Bayesian analysis, Markov Chain Monte Carlo analysis

  15. Stochastic Modelling of Hydrologic Systems

    DEFF Research Database (Denmark)

    Jonsdottir, Harpa

    2007-01-01

    In this PhD project several stochastic modelling methods are studied and applied on various subjects in hydrology. The research was prepared at Informatics and Mathematical Modelling at the Technical University of Denmark. The thesis is divided into two parts. The first part contains...... an introduction and an overview of the papers published. Then an introduction to basic concepts in hydrology along with a description of hydrological data is given. Finally an introduction to stochastic modelling is given. The second part contains the research papers. In the research papers the stochastic methods...... are described, as at the time of publication these methods represent new contribution to hydrology. The second part also contains additional description of software used and a brief introduction to stiff systems. The system in one of the papers is stiff....

  16. Gradation of complexity and predictability of hydrological processes

    Science.gov (United States)

    Sang, Yan-Fang; Singh, Vijay P.; Wen, Jun; Liu, Changming

    2015-06-01

    Quantification of the complexity and predictability of hydrological systems is important for evaluating the impact of climate change on hydrological processes, and for guiding water activities. In the literature, the focus seems to have been on describing the complexity of spatiotemporal distribution of hydrological variables, but little attention has been paid to the study of complexity gradation, because the degree of absolute complexity of hydrological systems cannot be objectively evaluated. Here we show that complexity and predictability of hydrological processes can be graded into three ranks (low, middle, and high). The gradation is based on the difference in the energy distribution of hydrological series and that of white noise under multitemporal scales. It reflects different energy concentration levels and contents of deterministic components of the hydrological series in the three ranks. Higher energy concentration level reflects lower complexity and higher predictability, but scattered energy distribution being similar to white noise has the highest complexity and is almost unpredictable. We conclude that the three ranks (low, middle, and high) approximately correspond to deterministic, stochastic, and random hydrological systems, respectively. The result of complexity gradation can guide hydrological observations and modeling, and identification of similarity patterns among different hydrological systems.

  17. Data Access System for Hydrology

    Science.gov (United States)

    Whitenack, T.; Zaslavsky, I.; Valentine, D.; Djokic, D.

    2007-12-01

    As part of the CUAHSI HIS (Consortium of Universities for the Advancement of Hydrologic Science, Inc., Hydrologic Information System), the CUAHSI HIS team has developed Data Access System for Hydrology or DASH. DASH is based on commercial off the shelf technology, which has been developed in conjunction with a commercial partner, ESRI. DASH is a web-based user interface, developed in ASP.NET developed using ESRI ArcGIS Server 9.2 that represents a mapping, querying and data retrieval interface over observation and GIS databases, and web services. This is the front end application for the CUAHSI Hydrologic Information System Server. The HIS Server is a software stack that organizes observation databases, geographic data layers, data importing and management tools, and online user interfaces such as the DASH application, into a flexible multi- tier application for serving both national-level and locally-maintained observation data. The user interface of the DASH web application allows online users to query observation networks by location and attributes, selecting stations in a user-specified area where a particular variable was measured during a given time interval. Once one or more stations and variables are selected, the user can retrieve and download the observation data for further off-line analysis. The DASH application is highly configurable. The mapping interface can be configured to display map services from multiple sources in multiple formats, including ArcGIS Server, ArcIMS, and WMS. The observation network data is configured in an XML file where you specify the network's web service location and its corresponding map layer. Upon initial deployment, two national level observation networks (USGS NWIS daily values and USGS NWIS Instantaneous values) are already pre-configured. There is also an optional login page which can be used to restrict access as well as providing a alternative to immediate downloads. For large request, users would be notified via

  18. Genome-wide analysis of a Wnt1-regulated transcriptional network implicates neurodegenerative pathways.

    Science.gov (United States)

    Wexler, Eric M; Rosen, Ezra; Lu, Daning; Osborn, Gregory E; Martin, Elizabeth; Raybould, Helen; Geschwind, Daniel H

    2011-10-04

    Wnt proteins are critical to mammalian brain development and function. The canonical Wnt signaling pathway involves the stabilization and nuclear translocation of β-catenin; however, Wnt also signals through alternative, noncanonical pathways. To gain a systems-level, genome-wide view of Wnt signaling, we analyzed Wnt1-stimulated changes in gene expression by transcriptional microarray analysis in cultured human neural progenitor (hNP) cells at multiple time points over a 72-hour time course. We observed a widespread oscillatory-like pattern of changes in gene expression, involving components of both the canonical and the noncanonical Wnt signaling pathways. A higher-order, systems-level analysis that combined independent component analysis, waveform analysis, and mutual information-based network construction revealed effects on pathways related to cell death and neurodegenerative disease. Wnt effectors were tightly clustered with presenilin1 (PSEN1) and granulin (GRN), which cause dominantly inherited forms of Alzheimer's disease and frontotemporal dementia (FTD), respectively. We further explored a potential link between Wnt1 and GRN and found that Wnt1 decreased GRN expression by hNPs. Conversely, GRN knockdown increased WNT1 expression, demonstrating that Wnt and GRN reciprocally regulate each other. Finally, we provided in vivo validation of the in vitro findings by analyzing gene expression data from individuals with FTD. These unbiased and genome-wide analyses provide evidence for a connection between Wnt signaling and the transcriptional regulation of neurodegenerative disease genes.

  19. Extending in silico mechanism-of-action analysis by annotating targets with pathways: application to cellular cytotoxicity readouts.

    Science.gov (United States)

    Liggi, Sonia; Drakakis, Georgios; Koutsoukas, Alexios; Cortes-Ciriano, Isidro; Martínez-Alonso, Patricia; Malliavin, Thérèse E; Velazquez-Campoy, Adrian; Brewerton, Suzanne C; Bodkin, Michael J; Evans, David A; Glen, Robert C; Carrodeguas, José Alberto; Bender, Andreas

    2014-01-01

    An in silico mechanism-of-action analysis protocol was developed, comprising molecule bioactivity profiling, annotation of predicted targets with pathways and calculation of enrichment factors to highlight targets and pathways more likely to be implicated in the studied phenotype. The method was applied to a cytotoxicity phenotypic endpoint, with enriched targets/pathways found to be statistically significant when compared with 100 random datasets. Application on a smaller apoptotic set (10 molecules) did not allowed to obtain statistically relevant results, suggesting that the protocol requires modification such as analysis of the most frequently predicted targets/annotated pathways. Pathway annotations improved the mechanism-of-action information gained by target prediction alone, allowing a better interpretation of the predictions and providing better mapping of targets onto pathways.

  20. Analysis of Stomatal Patterning in Selected Mutants of MAPK Pathways

    KAUST Repository

    Felemban, Abrar

    2016-05-01

    Stomata are cellular valves in plants that play an essential role in the regulation of gas exchange and are distributed in the epidermis of aerial organs. In Arabidopsis thaliana, stomatal production and development are coordinated by the mitogen-activated protein kinase (MAPK) signalling pathway, which modulates a variety of other processes, including cell proliferation, regulation of cytokinesis, programed cell death, and response to abiotic and biotic stress. The environment also plays a role in stomatal development, by influencing the frequency at which stomata develop in leaves. This thesis presents an analysis of stomatal development in Arabidopsis mutants in two MAPK pathways: MEKK1-MKK1/MKK2-MPK4, and MAP3K17/18-MKK3. Obtained results demonstrate the effect of stress conditions on stomatal development and specify the involvement of analysed MAPK in stomatal patterning. First, both analysed pathways modulate stomatal patterning in Arabidopsis cotyledons. Second, plant growth-promoting bacteria tested enhance stomatal density and affect guard cell morphology. Third, the sucrose or mannitol treatment increases defects in stomatal patterning. Finally, salt stress or high temperature can suppress stomatal defects in mutants of the MEKK1-MKK1/MKK2-MPK4 pathway.

  1. Hydrology team

    Science.gov (United States)

    Ragan, R.

    1982-01-01

    General problems faced by hydrologists when using historical records, real time data, statistical analysis, and system simulation in providing quantitative information on the temporal and spatial distribution of water are related to the limitations of these data. Major problem areas requiring multispectral imaging-based research to improve hydrology models involve: evapotranspiration rates and soil moisture dynamics for large areas; the three dimensional characteristics of bodies of water; flooding in wetlands; snow water equivalents; runoff and sediment yield from ungaged watersheds; storm rainfall; fluorescence and polarization of water and its contained substances; discriminating between sediment and chlorophyll in water; role of barrier island dynamics in coastal zone processes; the relationship between remotely measured surface roughness and hydraulic roughness of land surfaces and stream networks; and modeling the runoff process.

  2. Uncertainty analysis of hydrology calculations for final repositories for nuclear waste

    International Nuclear Information System (INIS)

    Gustafsson, B.

    1986-01-01

    The technique of using the NAMMU-HYPAC computer code has been transferred from the group of developers to an end user. The package has been found to be flexible and powerful but also quite demanding. The code has been used to investigate certain numerical properties of hydrological models including variations of permeability

  3. Debates—Hypothesis testing in hydrology: Introduction

    Science.gov (United States)

    Blöschl, Günter

    2017-03-01

    This paper introduces the papers in the "Debates—Hypothesis testing in hydrology" series. The four articles in the series discuss whether and how the process of testing hypotheses leads to progress in hydrology. Repeated experiments with controlled boundary conditions are rarely feasible in hydrology. Research is therefore not easily aligned with the classical scientific method of testing hypotheses. Hypotheses in hydrology are often enshrined in computer models which are tested against observed data. Testability may be limited due to model complexity and data uncertainty. All four articles suggest that hypothesis testing has contributed to progress in hydrology and is needed in the future. However, the procedure is usually not as systematic as the philosophy of science suggests. A greater emphasis on a creative reasoning process on the basis of clues and explorative analyses is therefore needed.

  4. Comparison and Validation of Hydrological E-Flow Methods through Hydrodynamic Modelling

    Science.gov (United States)

    Kuriqi, Alban; Rivaes, Rui; Sordo-Ward, Alvaro; Pinheiro, António N.; Garrote, Luis

    2017-04-01

    Flow regime determines physical habitat conditions and local biotic configuration. The development of environmental flow guidelines to support the river integrity is becoming a major concern in water resources management. In this study, we analysed two sites located in southern part of Portugal, respectively at Odelouca and Ocreza Rivers, characterised by the Mediterranean climate. Both rivers are almost in pristine condition, not regulated by dams or other diversion construction. This study presents an analysis of the effect on fish habitat suitability by the implementation of different hydrological e-flow methods. To conduct this study we employed certain hydrological e-flow methods recommended by the European Small Hydropower Association (ESHA). River hydrology assessment was based on approximately 30 years of mean daily flow data, provided by the Portuguese Water Information System (SNIRH). The biological data, bathymetry, physical and hydraulic features, and the Habitat Suitability Index for fish species were collected from extensive field works. We followed the Instream Flow Incremental Methodology (IFIM) to assess the flow-habitat relationship taking into account the habitat suitability of different instream flow releases. Initially, we analysed fish habitat suitability based on natural conditions, and we used it as reference condition for other scenarios considering the chosen hydrological e-flow methods. We accomplished the habitat modelling through hydrodynamic analysis by using River-2D model. The same methodology was applied to each scenario by considering as input the e-flows obtained from each of the hydrological method employed in this study. This contribution shows the significance of ecohydrological studies in establishing a foundation for water resources management actions. Keywords: ecohydrology, e-flow, Mediterranean rivers, river conservation, fish habitat, River-2D, Hydropower.

  5. Pathway and network-based analysis of genome-wide association studies and RT-PCR validation in polycystic ovary syndrome.

    Science.gov (United States)

    Shen, Haoran; Liang, Zhou; Zheng, Saihua; Li, Xuelian

    2017-11-01

    The purpose of this study was to identify promising candidate genes and pathways in polycystic ovary syndrome (PCOS). Microarray dataset GSE345269 obtained from the Gene Expression Omnibus database includes 7 granulosa cell samples from PCOS patients, and 3 normal granulosa cell samples. Differentially expressed genes (DEGs) were screened between PCOS and normal samples. Pathway enrichment analysis was conducted for DEGs using ClueGO and CluePedia plugin of Cytoscape. A Reactome functional interaction (FI) network of the DEGs was built using ReactomeFIViz, and then network modules were extracted, followed by pathway enrichment analysis for the modules. Expression of DEGs in granulosa cell samples was measured using quantitative RT-PCR. A total of 674 DEGs were retained, which were significantly enriched with inflammation and immune-related pathways. Eight modules were extracted from the Reactome FI network. Pathway enrichment analysis revealed significant pathways of each module: module 0, Regulation of RhoA activity and Signaling by Rho GTPases pathways shared ARHGAP4 and ARHGAP9; module 2, GlycoProtein VI-mediated activation cascade pathway was enriched with RHOG; module 3, Thromboxane A2 receptor signaling, Chemokine signaling pathway, CXCR4-mediated signaling events pathways were enriched with LYN, the hub gene of module 3. Results of RT-PCR confirmed the finding of the bioinformatic analysis that ARHGAP4, ARHGAP9, RHOG and LYN were significantly upregulated in PCOS. RhoA-related pathways, GlycoProtein VI-mediated activation cascade pathway, ARHGAP4, ARHGAP9, RHOG and LYN may be involved in the pathogenesis of PCOS.

  6. Hydrologic Analysis of Ungauged Catchments For The Supply of Water For Irrigation On Railway Embankment Batters

    Science.gov (United States)

    Gyasi-Agyei, Y.; Nissen, D.

    Water has been identified as a key component to the success of grass establishment on railway embankment batters (side slope) within Central Queensland, Australia, to control erosion. However, the region under study being semi-arid experiences less than 600 mm average annual rainfall occurring on about 60 days of the year. Culverts and bridges are integral part of railway embankments. They are used to cross water courses, be it an ephemeral creek or just a surface runoff path. Surface runoff through an ungauged railway embankment culvert is diverted to a temporary excavated pond located at the downstream side of the hydraulic structure. The temporary excavated pond water is used to feed an automated drip irrigation system, with solar as a source of energy to drive a pump. Railway embankment batter erosion remediation is timed in the wet season when irrigation is used to supplement natural rainfall. Hydrologic analysis of ungauged catchments for sizing the temporary excavated pond is presented. It is based on scenarios of runoff coefficient and curve number, and mass curve (Rippl diagram). Three years of continuous rainfall data (1997/1998 -1999/2000) were used to design a pond. The performance of the designed pond was evaluated in a field experiment during the next wet season (2000/2001). It supplied adequate water for irrigation as predicted by the hydrologic analysis during the grass establishment. This helped to achieve 100% grass cover on the railway embankment batter within 12 weeks. The proposed irrigation system has been demonstrated t o be feasible and cost effective.

  7. Hydrologic Design in the Anthropocene

    Science.gov (United States)

    Vogel, R. M.; Farmer, W. H.; Read, L.

    2014-12-01

    In an era dubbed the Anthropocene, the natural world is being transformed by a myriad of human influences. As anthropogenic impacts permeate hydrologic systems, hydrologists are challenged to fully account for such changes and develop new methods of hydrologic design. Deterministic watershed models (DWM), which can account for the impacts of changes in land use, climate and infrastructure, are becoming increasing popular for the design of flood and/or drought protection measures. As with all models that are calibrated to existing datasets, DWMs are subject to model error or uncertainty. In practice, the model error component of DWM predictions is typically ignored yet DWM simulations which ignore model error produce model output which cannot reproduce the statistical properties of the observations they are intended to replicate. In the context of hydrologic design, we demonstrate how ignoring model error can lead to systematic downward bias in flood quantiles, upward bias in drought quantiles and upward bias in water supply yields. By reincorporating model error, we document how DWM models can be used to generate results that mimic actual observations and preserve their statistical behavior. In addition to use of DWM for improved predictions in a changing world, improved communication of the risk and reliability is also needed. Traditional statements of risk and reliability in hydrologic design have been characterized by return periods, but such statements often assume that the annual probability of experiencing a design event remains constant throughout the project horizon. We document the general impact of nonstationarity on the average return period and reliability in the context of hydrologic design. Our analyses reveal that return periods do not provide meaningful expressions of the likelihood of future hydrologic events. Instead, knowledge of system reliability over future planning horizons can more effectively prepare society and communicate the likelihood

  8. Penalized differential pathway analysis of integrative oncogenomics studies.

    Science.gov (United States)

    van Wieringen, Wessel N; van de Wiel, Mark A

    2014-04-01

    Through integration of genomic data from multiple sources, we may obtain a more accurate and complete picture of the molecular mechanisms underlying tumorigenesis. We discuss the integration of DNA copy number and mRNA gene expression data from an observational integrative genomics study involving cancer patients. The two molecular levels involved are linked through the central dogma of molecular biology. DNA copy number aberrations abound in the cancer cell. Here we investigate how these aberrations affect gene expression levels within a pathway using observational integrative genomics data of cancer patients. In particular, we aim to identify differential edges between regulatory networks of two groups involving these molecular levels. Motivated by the rate equations, the regulatory mechanism between DNA copy number aberrations and gene expression levels within a pathway is modeled by a simultaneous-equations model, for the one- and two-group case. The latter facilitates the identification of differential interactions between the two groups. Model parameters are estimated by penalized least squares using the lasso (L1) penalty to obtain a sparse pathway topology. Simulations show that the inclusion of DNA copy number data benefits the discovery of gene-gene interactions. In addition, the simulations reveal that cis-effects tend to be over-estimated in a univariate (single gene) analysis. In the application to real data from integrative oncogenomic studies we show that inclusion of prior information on the regulatory network architecture benefits the reproducibility of all edges. Furthermore, analyses of the TP53 and TGFb signaling pathways between ER+ and ER- samples from an integrative genomics breast cancer study identify reproducible differential regulatory patterns that corroborate with existing literature.

  9. Entropy: From Thermodynamics to Hydrology

    Directory of Open Access Journals (Sweden)

    Demetris Koutsoyiannis

    2014-02-01

    Full Text Available Some known results from statistical thermophysics as well as from hydrology are revisited from a different perspective trying: (a to unify the notion of entropy in thermodynamic and statistical/stochastic approaches of complex hydrological systems and (b to show the power of entropy and the principle of maximum entropy in inference, both deductive and inductive. The capability for deductive reasoning is illustrated by deriving the law of phase change transition of water (Clausius-Clapeyron from scratch by maximizing entropy in a formal probabilistic frame. However, such deductive reasoning cannot work in more complex hydrological systems with diverse elements, yet the entropy maximization framework can help in inductive inference, necessarily based on data. Several examples of this type are provided in an attempt to link statistical thermophysics with hydrology with a unifying view of entropy.

  10. Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens.

    Science.gov (United States)

    Jiang, Zhenhong; He, Fei; Zhang, Ziding

    2017-07-01

    Through large-scale transcriptional data analyses, we highlighted the importance of plant metabolism in plant immunity and identified 26 metabolic pathways that were frequently influenced by the infection of 14 different pathogens. Reprogramming of plant metabolism is a common phenomenon in plant defense responses. Currently, a large number of transcriptional profiles of infected tissues in Arabidopsis (Arabidopsis thaliana) have been deposited in public databases, which provides a great opportunity to understand the expression patterns of metabolic pathways during plant defense responses at the systems level. Here, we performed a large-scale transcriptome analysis based on 135 previously published expression samples, including 14 different pathogens, to explore the expression pattern of Arabidopsis metabolic pathways. Overall, metabolic genes are significantly changed in expression during plant defense responses. Upregulated metabolic genes are enriched on defense responses, and downregulated genes are enriched on photosynthesis, fatty acid and lipid metabolic processes. Gene set enrichment analysis (GSEA) identifies 26 frequently differentially expressed metabolic pathways (FreDE_Paths) that are differentially expressed in more than 60% of infected samples. These pathways are involved in the generation of energy, fatty acid and lipid metabolism as well as secondary metabolite biosynthesis. Clustering analysis based on the expression levels of these 26 metabolic pathways clearly distinguishes infected and control samples, further suggesting the importance of these metabolic pathways in plant defense responses. By comparing with FreDE_Paths from abiotic stresses, we find that the expression patterns of 26 FreDE_Paths from biotic stresses are more consistent across different infected samples. By investigating the expression correlation between transcriptional factors (TFs) and FreDE_Paths, we identify several notable relationships. Collectively, the current study

  11. Hydrologic evaluation methodology for estimating water movement through the unsaturated zone at commercial low-level radioactive waste disposal site

    Science.gov (United States)

    Meyer, P.D.; Rockhold, M.L.; Nichols, W.E.; Gee, G.W.

    1996-01-01

    This report identifies key technical issues related to hydrologic assessment of water flow in the unsaturated zone at low-level radioactive waste (LLW) disposal facilities. In addition, a methodology for incorporating these issues in the performance assessment of proposed LLW disposal facilities is identified and evaluated. The issues discussed fall into four areas:Estimating the water balance at a site (i.e., infiltration, runoff, water storage, evapotranspiration, and recharge);Analyzing the hydrologic performance of engineered components of a facility;Evaluating the application of models to the prediction of facility performance; andEstimating the uncertainty in predicted facility performance.An estimate of recharge at a LLW site is important since recharge is a principal factor in controlling the release of contaminants via the groundwater pathway. The most common methods for estimating recharge are discussed in Chapter 2. Many factors affect recharge; the natural recharge at an undisturbed site is not necessarily representative either of the recharge that will occur after the site has been disturbed or of the flow of water into a disposal facility at the site. Factors affecting recharge are discussed in Chapter 2.At many sites engineered components are required for a LLW facility to meet performance requirements. Chapter 3 discusses the use of engineered barriers to control the flow of water in a LLW facility, with a particular emphasis on cover systems. Design options and the potential performance and degradation mechanisms of engineered components are also discussed.Water flow in a LLW disposal facility must be evaluated before construction of the facility. In addition, hydrologic performance must be predicted over a very long time frame. For these reasons, the hydrologic evaluation relies on the use of predictive modeling. In Chapter 4, the evaluation of unsaturated water flow modeling is discussed. A checklist of items is presented to guide the evaluation

  12. Isotope hydrology in Latin America

    International Nuclear Information System (INIS)

    Payne, B.R.

    1976-01-01

    There are a broad range of nuclear techniques applicable to a variety of hydrological problems and these techniques are becoming recognized as an additional and, in some cases, indispensable tool available to the hydrologist in his quest to meet the increasing demands for water by agriculture, industry and community water supply. In Latin America we find examples of almost all the nuclear hydrological techniques. This article endeavours to give a summary account of the status of isotope hydrology in the region and the types of problems to which these techniques have been applied

  13. Transcriptome Analysis of Manganese-deficient Chlamydomonas reinhardtii Provides Insight on the Chlorophyll Biosynthesis Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Lockhart, Ainsley; Zvenigorodsky, Natasha; Pedraza, Mary Ann; Lindquist, Erika

    2011-08-11

    The biosynthesis of chlorophyll and other tetrapyrroles is a vital but poorly understood process. Recent genomic advances with the unicellular green algae Chlamydomonas reinhardtii have created opportunity to more closely examine the mechanisms of the chlorophyll biosynthesis pathway via transcriptome analysis. Manganese is a nutrient of interest for complex reactions because of its multiple stable oxidation states and role in molecular oxygen coordination. C. reinhardtii was cultured in Manganese-deplete Tris-acetate-phosphate (TAP) media for 24 hours and used to create cDNA libraries for sequencing using Illumina TruSeq technology. Transcriptome analysis provided intriguing insight on possible regulatory mechanisms in the pathway. Evidence supports similarities of GTR (Glutamyl-tRNA synthase) to its Chlorella vulgaris homolog in terms of Mn requirements. Data was also suggestive of Mn-related compensatory up-regulation for pathway proteins CHLH1 (Manganese Chelatase), GUN4 (Magnesium chelatase activating protein), and POR1 (Light-dependent protochlorophyllide reductase). Intriguingly, data suggests possible reciprocal expression of oxygen dependent CPX1 (coproporphyrinogen III oxidase) and oxygen independent CPX2. Further analysis using RT-PCR could provide compelling evidence for several novel regulatory mechanisms in the chlorophyll biosynthesis pathway.

  14. HESS Opinions "The art of hydrology"*

    Directory of Open Access Journals (Sweden)

    H. H. G. Savenije

    2009-02-01

    Full Text Available Hydrological modelling is the same as developing and encoding a hydrological theory. A hydrological model is not a tool but a hypothesis. The whole discussion about the inadequacy of hydrological models we have witnessed of late, is related to the wrong concept of what a model is. Good models don't exist. Instead of looking for the "best" model, we should aim at developing better models. The process of modelling should be top-down, learning from the data while at the same time connection should be established with underlying physical theory (bottom-up. As a result of heterogeneity occurring at all scales in hydrology, there always remains a need for calibration of models. This implies that we need tailor-made and site-specific models. Only flexible models are fit for this modelling process, as opposed to most of the established software or "one-size-fits-all" models. The process of modelling requires imagination, inspiration, creativity, ingenuity, experience and skill. These are qualities that belong to the field of art. Hydrology is an art as much as it is science and engineering.

  15. Scaling, Similarity, and the Fourth Paradigm for Hydrology

    Science.gov (United States)

    Peters-Lidard, Christa D.; Clark, Martyn; Samaniego, Luis; Verhoest, Niko E. C.; van Emmerik, Tim; Uijlenhoet, Remko; Achieng, Kevin; Franz, Trenton E.; Woods, Ross

    2017-01-01

    In this synthesis paper addressing hydrologic scaling and similarity, we posit that roadblocks in the search for universal laws of hydrology are hindered by our focus on computational simulation (the third paradigm), and assert that it is time for hydrology to embrace a fourth paradigm of data-intensive science. Advances in information-based hydrologic science, coupled with an explosion of hydrologic data and advances in parameter estimation and modelling, have laid the foundation for a data-driven framework for scrutinizing hydrological scaling and similarity hypotheses. We summarize important scaling and similarity concepts (hypotheses) that require testing, describe a mutual information framework for testing these hypotheses, describe boundary condition, state flux, and parameter data requirements across scales to support testing these hypotheses, and discuss some challenges to overcome while pursuing the fourth hydrological paradigm. We call upon the hydrologic sciences community to develop a focused effort towards adopting the fourth paradigm and apply this to outstanding challenges in scaling and similarity.

  16. Evaluation of Airborne Lidar Elevation Surfaces for Propagation of Coastal Inundation: The Importance of Hydrologic Connectivity

    Directory of Open Access Journals (Sweden)

    Sandra Poppenga

    2015-09-01

    Full Text Available Detailed information about coastal inundation is vital to understanding dynamic and populated areas that are impacted by storm surge and flooding. To understand these natural hazard risks, lidar elevation surfaces are frequently used to model inundation in coastal areas. A single-value surface method is sometimes used to inundate areas in lidar elevation surfaces that are below a specified elevation value. However, such an approach does not take into consideration hydrologic connectivity between elevation grids cells resulting in inland areas that should be hydrologically connected to the ocean, but are not. Because inland areas that should drain to the ocean are hydrologically disconnected by raised features in a lidar elevation surface, simply raising the water level to propagate coastal inundation will lead to inundation uncertainties. We took advantage of this problem to identify hydrologically disconnected inland areas to point out that they should be considered for coastal inundation, and that a lidar-based hydrologic surface should be developed with hydrologic connectivity prior to inundation analysis. The process of achieving hydrologic connectivity with hydrologic-enforcement is not new, however, the application of hydrologically-enforced lidar elevation surfaces for improved coastal inundation mapping as approached in this research is innovative. In this article, we propagated a high-resolution lidar elevation surface in coastal Staten Island, New York to demonstrate that inland areas lacking hydrologic connectivity to the ocean could potentially be included in inundation delineations. For inland areas that were hydrologically disconnected, we evaluated if drainage to the ocean was evident, and calculated an area exceeding 11 ha (~0.11 km2 that could be considered in inundation delineations. We also assessed land cover for each inland area to determine the type of physical surfaces that would be potentially impacted if the inland areas

  17. Evaluation of airborne lidar elevation surfaces for propagation of coastal inundation: the importance of hydrologic connectivity

    Science.gov (United States)

    Poppenga, Sandra K.; Worstell, Bruce B.

    2015-01-01

    Detailed information about coastal inundation is vital to understanding dynamic and populated areas that are impacted by storm surge and flooding. To understand these natural hazard risks, lidar elevation surfaces are frequently used to model inundation in coastal areas. A single-value surface method is sometimes used to inundate areas in lidar elevation surfaces that are below a specified elevation value. However, such an approach does not take into consideration hydrologic connectivity between elevation grids cells resulting in inland areas that should be hydrologically connected to the ocean, but are not. Because inland areas that should drain to the ocean are hydrologically disconnected by raised features in a lidar elevation surface, simply raising the water level to propagate coastal inundation will lead to inundation uncertainties. We took advantage of this problem to identify hydrologically disconnected inland areas to point out that they should be considered for coastal inundation, and that a lidar-based hydrologic surface should be developed with hydrologic connectivity prior to inundation analysis. The process of achieving hydrologic connectivity with hydrologic-enforcement is not new, however, the application of hydrologically-enforced lidar elevation surfaces for improved coastal inundation mapping as approached in this research is innovative. In this article, we propagated a high-resolution lidar elevation surface in coastal Staten Island, New York to demonstrate that inland areas lacking hydrologic connectivity to the ocean could potentially be included in inundation delineations. For inland areas that were hydrologically disconnected, we evaluated if drainage to the ocean was evident, and calculated an area exceeding 11 ha (~0.11 km2) that could be considered in inundation delineations. We also assessed land cover for each inland area to determine the type of physical surfaces that would be potentially impacted if the inland areas were considered as

  18. Hydrological Process Simulation of Inland River Watershed: A Case Study of the Heihe River Basin with Multiple Hydrological Models

    OpenAIRE

    Lili Wang; Zhonggen Wang; Jingjie Yu; Yichi Zhang; Suzhen Dang

    2018-01-01

    Simulating the hydrological processes of an inland river basin can help provide the scientific guidance to the policies of water allocation among different subbasins and water resource management groups within the subbasins. However, it is difficult to simulate the hydrological processes of an inland river basin with hydrological models due to the non-consistent hydrological characteristics of the entire basin. This study presents a solution to this problem with a case study about the hydrolo...

  19. CrowdHydrology: crowdsourcing hydrologic data and engaging citizen scientists.

    Science.gov (United States)

    Lowry, Christopher S; Fienen, Michael N

    2013-01-01

    Spatially and temporally distributed measurements of processes, such as baseflow at the watershed scale, come at substantial equipment and personnel cost. Research presented here focuses on building a crowdsourced database of inexpensive distributed stream stage measurements. Signs on staff gauges encourage citizen scientists to voluntarily send hydrologic measurements (e.g., stream stage) via text message to a server that stores and displays the data on the web. Based on the crowdsourced stream stage, we evaluate the accuracy of citizen scientist measurements and measurement approach. The results show that crowdsourced data collection is a supplemental method for collecting hydrologic data and a promising method of public engagement. © 2012, The Author(s). Ground Water © 2012, National Ground Water Association.

  20. Integrating hydrologic modeling web services with online data sharing to prepare, store, and execute models in hydrology

    Science.gov (United States)

    Gan, T.; Tarboton, D. G.; Dash, P. K.; Gichamo, T.; Horsburgh, J. S.

    2017-12-01

    Web based apps, web services and online data and model sharing technology are becoming increasingly available to support research. This promises benefits in terms of collaboration, platform independence, transparency and reproducibility of modeling workflows and results. However, challenges still exist in real application of these capabilities and the programming skills researchers need to use them. In this research we combined hydrologic modeling web services with an online data and model sharing system to develop functionality to support reproducible hydrologic modeling work. We used HydroDS, a system that provides web services for input data preparation and execution of a snowmelt model, and HydroShare, a hydrologic information system that supports the sharing of hydrologic data, model and analysis tools. To make the web services easy to use, we developed a HydroShare app (based on the Tethys platform) to serve as a browser based user interface for HydroDS. In this integration, HydroDS receives web requests from the HydroShare app to process the data and execute the model. HydroShare supports storage and sharing of the results generated by HydroDS web services. The snowmelt modeling example served as a use case to test and evaluate this approach. We show that, after the integration, users can prepare model inputs or execute the model through the web user interface of the HydroShare app without writing program code. The model input/output files and metadata describing the model instance are stored and shared in HydroShare. These files include a Python script that is automatically generated by the HydroShare app to document and reproduce the model input preparation workflow. Once stored in HydroShare, inputs and results can be shared with other users, or published so that other users can directly discover, repeat or modify the modeling work. This approach provides a collaborative environment that integrates hydrologic web services with a data and model sharing

  1. A question driven socio-hydrological modeling process

    Science.gov (United States)

    Garcia, M.; Portney, K.; Islam, S.

    2016-01-01

    Human and hydrological systems are coupled: human activity impacts the hydrological cycle and hydrological conditions can, but do not always, trigger changes in human systems. Traditional modeling approaches with no feedback between hydrological and human systems typically cannot offer insight into how different patterns of natural variability or human-induced changes may propagate through this coupled system. Modeling of coupled human-hydrological systems, also called socio-hydrological systems, recognizes the potential for humans to transform hydrological systems and for hydrological conditions to influence human behavior. However, this coupling introduces new challenges and existing literature does not offer clear guidance regarding model conceptualization. There are no universally accepted laws of human behavior as there are for the physical systems; furthermore, a shared understanding of important processes within the field is often used to develop hydrological models, but there is no such consensus on the relevant processes in socio-hydrological systems. Here we present a question driven process to address these challenges. Such an approach allows modeling structure, scope and detail to remain contingent on and adaptive to the question context. We demonstrate the utility of this process by revisiting a classic question in water resources engineering on reservoir operation rules: what is the impact of reservoir operation policy on the reliability of water supply for a growing city? Our example model couples hydrological and human systems by linking the rate of demand decreases to the past reliability to compare standard operating policy (SOP) with hedging policy (HP). The model shows that reservoir storage acts both as a buffer for variability and as a delay triggering oscillations around a sustainable level of demand. HP reduces the threshold for action thereby decreasing the delay and the oscillation effect. As a result, per capita demand decreases during

  2. HRE-Pond Cryogenic Barrier Technology Demonstration: Pre- and Post-Barrier Hydrologic Assessment

    International Nuclear Information System (INIS)

    Moline, G.R.

    1999-01-01

    The Homogeneous Reactor Experiment (HRE) Pond is the site of a former impoundment for radioactive wastes on the Oak Ridge Reservation (ORR) in east Tennessee. The pond received radioactive wastes from 1957 to 1962, and was subsequently drained, filled with soil, and covered with an asphalt cap. The site is bordered to the east and south by an unnamed stream that contains significant concentrations of radioactive contaminants, primarily 90 Sr. Because of the proximity of the stream to the HRE disposal site and the probable flow of groundwater from the site to the stream, it was hypothesized that the HRE Pond has been a source of contamination to the creek. The HRE-Pond was chosen as the site of a cryogenic barrier demonstration to evaluate this technology as a means for rapid, temporary isolation of contaminants in the type of subsurface environment that exists on the ORR. The cryogenic barrier is created by the circulation of liquid CO 2 through a system of thermoprobes installed in boreholes which are backfilled with sand. The probes cool the subsurface, creating a vertical ice wall by freezing adjacent groundwater, effectively surrounding the pond on four sides. The purpose of this investigation was to evaluate the hydrologic conditions within and around the pond prior to, during, and after the cryogenic barrier emplacement. The objectives were (1) to provide a hydrologic baseline for post-banner performance assessment, (2) to confirm that the pond is hydraulically connected to the surrounding sediments, (3) to determine the likely contaminant exit pathways from the pond, and (4) to measure changes in hydrologic conditions after barrier emplacement in order to assess the barrier performance. Because relatively little information about the subsurface hydrology and the actual configuration of the pond existed, data from multiple sources was required to reconstruct this complex system

  3. HyCAW: Hydrological Climate change Adaptation Wizard

    Science.gov (United States)

    Bagli, Stefano; Mazzoli, Paolo; Broccoli, Davide; Luzzi, Valerio

    2016-04-01

    Changes in temporal and total water availability due to hydrologic and climate change requires an efficient use of resources through the selection of the best adaptation options. HyCAW provides a novel service to users willing or needing to adapt to hydrological change, by turning available scientific information into a user friendly online wizard that lets to: • Evaluate the monthly reduction of water availability induced by climate change; • Select the best adaptation options and visualize the benefits in terms of water balance and cost reduction; • Quantify potential of water saving by improving of water use efficiency. The tool entails knowledge of the intra-annual distribution of available surface and groundwater flows at a site under present and future (climate change) scenarios. This information is extracted from long term scenario simulation by E-HYPE (European hydrological predictions for the environment) model from Swedish Meteorological and Hydrological Institute, to quantify the expected evolution in water availability (e.g. percent reduction of soil infiltration and aquifer recharge; relative seasonal shift of runoff from summer to winter in mountain areas; etc.). Users are requested to provide in input their actual water supply on a monthly basis, both from surface and groundwater sources. Appropriate decision trees and an embedded precompiled database of Water saving technology for different sectors (household, agriculture, industrial, tourisms) lead them to interactively identify good practices for water saving/recycling/harvesting that they may implement in their specific context. Thanks to this service, users are not required to have a detailed understanding neither of data nor of hydrological processes, but may benefit of scientific analysis directly for practical adaptation in a simple and user friendly way, effectively improving their adaptation capacity. The tool is being developed under a collaborative FP7 funded project called SWITCH

  4. Hydrological modelling of fine sediments in the Odzi River, Zimbabwe

    African Journals Online (AJOL)

    Hydrological modelling of fine sediments in the Odzi River, Zimbabwe. ... An analysis of the model structure and a comparison with the rating curve function ... model validation through split sample and proxy basin comparison was performed.

  5. Annual compilation and analysis of hydrologic data for urban studies in the Bryan, Texas, metropolitan area, 1969

    Science.gov (United States)

    Robbins, W.D.

    1972-01-01

    Hydrologic investigations of urban areas in Texas were begun by the U.S. Geological Survey in 1954. These studies are now in progress in Austin, Houston, Dallas, Dallas County, Fort Worth, San Antonio, and Bryan. Hydrologic investigations of urban areas in Texas were begun by the U.S. Geological Survey in 1954. These studies are now in progress in Austin, Houston, Dallas, Dallas County, Fort Worth, San Antonio, and Bryan. 1. To determine, on the basis of historical data and hydrologic analyses, the magnitude and frequency of floods. 2. To document and define the areal extent of floods of greater than ordinary magnitude. 3. To determine the effect of urban development on flood peaks and volume. 4. To provide applied research facilities for studies at Texas A & M University at College Stations. This report, the first in a series of reports to be published annually, is primarily applicable to objectives 2, 3, and 4. The report presents the basic hydrologic data collected in two study areas during the 1969 water year (October 1, 1968, to September 30, 1969) and basic hydrologic data collected during part of the 1968 water year (April 5, 1968, to September 30, 1968). The locations of the two basins within the study area, Burton Creek and Hudson Creek, are shown on figure 1.

  6. Revisiting an interdisciplinary hydrological modelling project. A socio-hydrology (?) example from the early 2000s

    Science.gov (United States)

    Seidl, Roman; Barthel, Roland

    2016-04-01

    Interdisciplinary scientific and societal knowledge plays an increasingly important role in global change research. Also, in the field of water resources interdisciplinarity as well as cooperation with stakeholders from outside academia have been recognized as important. In this contribution, we revisit an integrated regional modelling system (DANUBIA), which was developed by an interdisciplinary team of researchers and relied on stakeholder participation in the framework of the GLOWA-Danube project from 2001 to 2011 (Mauser and Prasch 2016). As the model was developed before the current increase in literature on participatory modelling and interdisciplinarity, we ask how a socio-hydrology approach would have helped and in what way it would have made the work different. The present contribution firstly presents the interdisciplinary concept of DANUBIA, mainly with focus on the integration of human behaviour in a spatially explicit, process-based numerical modelling system (Roland Barthel, Janisch, Schwarz, Trifkovic, Nickel, Schulz, and Mauser 2008; R. Barthel, Nickel, Meleg, Trifkovic, and Braun 2005). Secondly, we compare the approaches to interdisciplinarity in GLOWA-Danube with concepts and ideas presented by socio-hydrology. Thirdly, we frame DANUBIA and a review of key literature on socio-hydrology in the context of a survey among hydrologists (N = 184). This discussion is used to highlight gaps and opportunities of the socio-hydrology approach. We show that the interdisciplinary aspect of the project and the participatory process of stakeholder integration in DANUBIA were not entirely successful. However, important insights were gained and important lessons were learnt. Against the background of these experiences we feel that in its current state, socio-hydrology is still lacking a plan for knowledge integration. Moreover, we consider necessary that socio-hydrology takes into account the lessons learnt from these earlier examples of knowledge integration

  7. Hydrological inferences through morphometric analysis of lower Kosi river basin of India for water resource management based on remote sensing data

    Science.gov (United States)

    Rai, Praveen Kumar; Chandel, Rajeev Singh; Mishra, Varun Narayan; Singh, Prafull

    2018-03-01

    Satellite based remote sensing technology has proven to be an effectual tool in analysis of drainage networks, study of surface morphological features and their correlation with groundwater management prospect at basin level. The present study highlights the effectiveness and advantage of remote sensing and GIS-based analysis for quantitative and qualitative assessment of flood plain region of lower Kosi river basin based on morphometric analysis. In this study, ASTER DEM is used to extract the vital hydrological parameters of lower Kosi river basin in ARC GIS software. Morphometric parameters, e.g., stream order, stream length, bifurcation ratio, drainage density, drainage frequency, drainage texture, form factor, circularity ratio, elongation ratio, etc., have been calculated for the Kosi basin and their hydrological inferences were discussed. Most of the morphometric parameters such as bifurcation ratio, drainage density, drainage frequency, drainage texture concluded that basin has good prospect for water management program for various purposes and also generated data base that can provide scientific information for site selection of water-harvesting structures and flood management activities in the basin. Land use land cover (LULC) of the basin were also prepared from Landsat data of 2005, 2010 and 2015 to assess the change in dynamic of the basin and these layers are very noteworthy for further watershed prioritization.

  8. Atmospheric Pathway Screening Analysis for Saltstone Disposal Facility Vault 4

    International Nuclear Information System (INIS)

    COOK, JAMES

    2004-01-01

    A sequential screening process using a methodology developed by the National Council on Radiation Protection and Measurements, professional judgment and process knowledge has been used to produce a list of radionuclides requiring detailed analysis to derive disposal limits for the Saltstone Disposal Facility based on the atmospheric pathway

  9. Modelling and performance analysis of clinical pathways using the stochastic process algebra PEPA.

    Science.gov (United States)

    Yang, Xian; Han, Rui; Guo, Yike; Bradley, Jeremy; Cox, Benita; Dickinson, Robert; Kitney, Richard

    2012-01-01

    Hospitals nowadays have to serve numerous patients with limited medical staff and equipment while maintaining healthcare quality. Clinical pathway informatics is regarded as an efficient way to solve a series of hospital challenges. To date, conventional research lacks a mathematical model to describe clinical pathways. Existing vague descriptions cannot fully capture the complexities accurately in clinical pathways and hinders the effective management and further optimization of clinical pathways. Given this motivation, this paper presents a clinical pathway management platform, the Imperial Clinical Pathway Analyzer (ICPA). By extending the stochastic model performance evaluation process algebra (PEPA), ICPA introduces a clinical-pathway-specific model: clinical pathway PEPA (CPP). ICPA can simulate stochastic behaviours of a clinical pathway by extracting information from public clinical databases and other related documents using CPP. Thus, the performance of this clinical pathway, including its throughput, resource utilisation and passage time can be quantitatively analysed. A typical clinical pathway on stroke extracted from a UK hospital is used to illustrate the effectiveness of ICPA. Three application scenarios are tested using ICPA: 1) redundant resources are identified and removed, thus the number of patients being served is maintained with less cost; 2) the patient passage time is estimated, providing the likelihood that patients can leave hospital within a specific period; 3) the maximum number of input patients are found, helping hospitals to decide whether they can serve more patients with the existing resource allocation. ICPA is an effective platform for clinical pathway management: 1) ICPA can describe a variety of components (state, activity, resource and constraints) in a clinical pathway, thus facilitating the proper understanding of complexities involved in it; 2) ICPA supports the performance analysis of clinical pathway, thereby assisting

  10. Moment-based metrics for global sensitivity analysis of hydrological systems

    Directory of Open Access Journals (Sweden)

    A. Dell'Oca

    2017-12-01

    Full Text Available We propose new metrics to assist global sensitivity analysis, GSA, of hydrological and Earth systems. Our approach allows assessing the impact of uncertain parameters on main features of the probability density function, pdf, of a target model output, y. These include the expected value of y, the spread around the mean and the degree of symmetry and tailedness of the pdf of y. Since reliable assessment of higher-order statistical moments can be computationally demanding, we couple our GSA approach with a surrogate model, approximating the full model response at a reduced computational cost. Here, we consider the generalized polynomial chaos expansion (gPCE, other model reduction techniques being fully compatible with our theoretical framework. We demonstrate our approach through three test cases, including an analytical benchmark, a simplified scenario mimicking pumping in a coastal aquifer and a laboratory-scale conservative transport experiment. Our results allow ascertaining which parameters can impact some moments of the model output pdf while being uninfluential to others. We also investigate the error associated with the evaluation of our sensitivity metrics by replacing the original system model through a gPCE. Our results indicate that the construction of a surrogate model with increasing level of accuracy might be required depending on the statistical moment considered in the GSA. The approach is fully compatible with (and can assist the development of analysis techniques employed in the context of reduction of model complexity, model calibration, design of experiment, uncertainty quantification and risk assessment.

  11. Genetic Programming for Automatic Hydrological Modelling

    Science.gov (United States)

    Chadalawada, Jayashree; Babovic, Vladan

    2017-04-01

    One of the recent challenges for the hydrologic research community is the need for the development of coupled systems that involves the integration of hydrologic, atmospheric and socio-economic relationships. This poses a requirement for novel modelling frameworks that can accurately represent complex systems, given, the limited understanding of underlying processes, increasing volume of data and high levels of uncertainity. Each of the existing hydrological models vary in terms of conceptualization and process representation and is the best suited to capture the environmental dynamics of a particular hydrological system. Data driven approaches can be used in the integration of alternative process hypotheses in order to achieve a unified theory at catchment scale. The key steps in the implementation of integrated modelling framework that is influenced by prior understanding and data, include, choice of the technique for the induction of knowledge from data, identification of alternative structural hypotheses, definition of rules, constraints for meaningful, intelligent combination of model component hypotheses and definition of evaluation metrics. This study aims at defining a Genetic Programming based modelling framework that test different conceptual model constructs based on wide range of objective functions and evolves accurate and parsimonious models that capture dominant hydrological processes at catchment scale. In this paper, GP initializes the evolutionary process using the modelling decisions inspired from the Superflex framework [Fenicia et al., 2011] and automatically combines them into model structures that are scrutinized against observed data using statistical, hydrological and flow duration curve based performance metrics. The collaboration between data driven and physical, conceptual modelling paradigms improves the ability to model and manage hydrologic systems. Fenicia, F., D. Kavetski, and H. H. Savenije (2011), Elements of a flexible approach

  12. Hydrological Response and Complex Impact Pathways of the 2015/2016 El Niño in Eastern and Southern Africa

    NARCIS (Netherlands)

    Siderius, C.; Gannon, K.E.; Ndiyoi, M.; Opere, A.; Batisani, N.; Olago, D.; Pardoe, J.; Conway, D.

    2018-01-01

    The 2015/2016 El Niño has been classified as one of the three most severe on record. El Niño teleconnections are commonly associated with droughts in southern Africa and high precipitation in eastern Africa. Despite their relatively frequent occurrence, evidence for their hydrological effects and

  13. Hydrology and Conservation Ecology

    Science.gov (United States)

    Narayanan, M.

    2006-12-01

    Responses to change in the behavior of ecological systems are largely governed by interactions at different levels. Research is essential and is to be necessarily designed to gain insights into various interactions at the community level. Sustainable resource management is only possible if conservation of biodiversity can be accomplished by properly using the knowledge discovered. It is well known that the United States Department of Agriculture provides technical information, resources, and data necessary to assist the researchers in addressing their conservation needs. Conservation aims to protect, preserve and conserve the earth's natural resources. These include, but not limited to the conservation of soil, water, minerals, air, plants and all living beings. The United States Department of Agriculture also encourages farmers and ranchers to voluntarily address threats to soil and water. Protection of wetlands and wildlife habitat has been on the radar screen of conservation experts for a very long time. The main objective has always been to help farmers and landowners conform and comply with federal and state environmental laws. During the implementation phase, farmers should be encouraged to make beneficial, cost-effective changes to methods of irrigation systems. In some cases, the hydrologic regime of the project area can be thought of as principally an issue of river flow regimes for floodplain forests. In this presentation, the author tries to focus on the impact of hydrology and conservation ecology on global warming. He also discusses the impact of hydrology and conservation ecology global air concerns such as greenhouse gas concentrations in the atmosphere. References: Chow, V. T, D. R. Maidment, and L. W. Mays. 1988. Applied Hydrology. McGraw-Hill, Inc. U.S. Soil Conservation Service. Technical Release 55: Urban Hydrology for Small Watersheds. USDA (U.S. Department of Agriculture). June 1986. Lehner, B. and P. Döll (2004). Development and validation

  14. Hydrological Bulletin

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Historical report (December 1937-April 1948) containing hydrologic information for the United States, divided into ten regions. While hourly precipitation tables...

  15. Enhancement of Nucleoside Production in Hirsutella sinensis Based on Biosynthetic Pathway Analysis

    Science.gov (United States)

    Liu, Zhi-Qiang; Zhang, Bo; Lin, Shan; Baker, Peter James; Chen, Mao-Sheng; Xue, Ya-Ping; Wu, Hui; Xu, Feng; Yuan, Shui-Jin; Teng, Yi; Wu, Ling-Fang

    2017-01-01

    To enhance nucleoside production in Hirsutella sinensis, the biosynthetic pathways of purine and pyrimidine nucleosides were constructed and verified. The differential expression analysis showed that purine nucleoside phosphorylase, inosine monophosphate dehydrogenase, and guanosine monophosphate synthase genes involved in purine nucleotide biosynthesis were significantly upregulated 16.56-fold, 8-fold, and 5.43-fold, respectively. Moreover, dihydroorotate dehydrogenase, uridine nucleosidase, uridine/cytidine monophosphate kinase, and inosine triphosphate pyrophosphatase genes participating in pyrimidine nucleoside biosynthesis were upregulated 4.53-fold, 10.63-fold, 4.26-fold, and 5.98-fold, respectively. To enhance the nucleoside production, precursors for synthesis of nucleosides were added based on the analysis of biosynthetic pathways. Uridine and cytidine contents, respectively, reached 5.04 mg/g and 3.54 mg/g when adding 2 mg/mL of ribose, resulting in an increase of 28.6% and 296% compared with the control, respectively. Meanwhile, uridine and cytidine contents, respectively, reached 10.83 mg/g 2.12 mg/g when adding 0.3 mg/mL of uracil, leading to an increase of 176.3% and 137.1%, respectively. This report indicated that fermentation regulation was an effective way to enhance the nucleoside production in H. sinensis based on biosynthetic pathway analysis. PMID:29333435

  16. Microarray analysis reveals genetic pathways modulated by tipifarnib in acute myeloid leukemia

    International Nuclear Information System (INIS)

    Raponi, Mitch; Belly, Robert T; Karp, Judith E; Lancet, Jeffrey E; Atkins, David; Wang, Yixin

    2004-01-01

    Farnesyl protein transferase inhibitors (FTIs) were originally developed to inhibit oncogenic ras, however it is now clear that there are several other potential targets for this drug class. The FTI tipifarnib (ZARNESTRA™, R115777) has recently demonstrated clinical responses in adults with refractory and relapsed acute leukemias. This study was conducted to identify genetic markers and pathways that are regulated by tipifarnib in acute myeloid leukemia (AML). Tipifarnib-mediated gene expression changes in 3 AML cell lines and bone marrow samples from two patients with AML were analyzed on a cDNA microarray containing approximately 7000 human genes. Pathways associated with these expression changes were identified using the Ingenuity Pathway Analysis tool. The expression analysis identified a common set of genes that were regulated by tipifarnib in three leukemic cell lines and in leukemic blast cells isolated from two patients who had been treated with tipifarnib. Association of modulated genes with biological functional groups identified several pathways affected by tipifarnib including cell signaling, cytoskeletal organization, immunity, and apoptosis. Gene expression changes were verified in a subset of genes using real time RT-PCR. Additionally, regulation of apoptotic genes was found to correlate with increased Annexin V staining in the THP-1 cell line but not in the HL-60 cell line. The genetic networks derived from these studies illuminate some of the biological pathways affected by FTI treatment while providing a proof of principle for identifying candidate genes that might be used as surrogate biomarkers of drug activity

  17. Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis.

    Science.gov (United States)

    Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Olsen, Catharina; Bontempi, Gianluca; Castiglioni, Isabella

    2018-01-06

    Modern high-throughput genomic technologies represent a comprehensive hallmark of molecular changes in pan-cancer studies. Although different cancer gene signatures have been revealed, the mechanism of tumourigenesis has yet to be completely understood. Pathways and networks are important tools to explain the role of genes in functional genomic studies. However, few methods consider the functional non-equal roles of genes in pathways and the complex gene-gene interactions in a network. We present a novel method in pan-cancer analysis that identifies de-regulated genes with a functional role by integrating pathway and network data. A pan-cancer analysis of 7158 tumour/normal samples from 16 cancer types identified 895 genes with a central role in pathways and de-regulated in cancer. Comparing our approach with 15 current tools that identify cancer driver genes, we found that 35.6% of the 895 genes identified by our method have been found as cancer driver genes with at least 2/15 tools. Finally, we applied a machine learning algorithm on 16 independent GEO cancer datasets to validate the diagnostic role of cancer driver genes for each cancer. We obtained a list of the top-ten cancer driver genes for each cancer considered in this study. Our analysis 1) confirmed that there are several known cancer driver genes in common among different types of cancer, 2) highlighted that cancer driver genes are able to regulate crucial pathways.

  18. Perspective on Eco-Hydrology Developing Strategy in China

    Science.gov (United States)

    Xia, J.

    2017-12-01

    China is one of developing countries with higher eco-environmental press in the world due to large population and its socio-economic development. In China, water is not only the sources for life, but also the key for production, and the foundation for eco-system. Thus, Eco-hydrology becomes a fundamental also an applied sciences related to describe the hydrologic mechanisms that underlie ecologic patterns and processes. This paper addresses the issue of Eco-hydrology Developing Strategy in China, supported by Chinese Academy of Sciences (CAS). Major contents include four aspects, namely: (1) Demands and frontier of eco-hydrology in the world; (2) Major theories and approaches of Eco-hydrology; (3) Perspective of future development on Eco-hydrology; (4) Enacting and proposal for China development strategy on Eco-hydrology. Application fields involves urban, rural area, wetland, river & lake, forest and special regions in China, such as the arid and semi-arid region and so on. The goal is to promote the disciplinary development of eco-hydrology, and serve for national demands on ecological civilization construction in China.

  19. Literature mining, gene-set enrichment and pathway analysis for target identification in Behçet's disease.

    Science.gov (United States)

    Wilson, Paul; Larminie, Christopher; Smith, Rona

    2016-01-01

    To use literature mining to catalogue Behçet's associated genes, and advanced computational methods to improve the understanding of the pathways and signalling mechanisms that lead to the typical clinical characteristics of Behçet's patients. To extend this technique to identify potential treatment targets for further experimental validation. Text mining methods combined with gene enrichment tools, pathway analysis and causal analysis algorithms. This approach identified 247 human genes associated with Behçet's disease and the resulting disease map, comprising 644 nodes and 19220 edges, captured important details of the relationships between these genes and their associated pathways, as described in diverse data repositories. Pathway analysis has identified how Behçet's associated genes are likely to participate in innate and adaptive immune responses. Causal analysis algorithms have identified a number of potential therapeutic strategies for further investigation. Computational methods have captured pertinent features of the prominent disease characteristics presented in Behçet's disease and have highlighted NOD2, ICOS and IL18 signalling as potential therapeutic strategies.

  20. Simulation of Reactive Constituent Fate and Transport in Hydrologic Simulator GSSHA

    National Research Council Canada - National Science Library

    Downer, Charles W

    2009-01-01

    The purpose of this System-Wide Water Resources Program (SWWRP) technical note is to describe the new fate and transport routines in the Gridded Surface Subsurface Hydrologic Analysis (GSSHA) model...

  1. Exploring the linkage between drought, high temperatures, and hydrologic sensitivities: A case study of the 2012 Great Plains drought.

    Science.gov (United States)

    Livneh, B.; Hoerling, M. P.

    2014-12-01

    The occurrence of drought is associated with agricultural loss, water supply shortfalls, and other economic impacts. Here we explore the physical relationships between precipitation deficits, high temperatures, and hydrologic responses as a pathway to better anticipate drought impacts. Current methodologies to predict hydrologic scarcity include local monitoring of river flows, remote sensing of land-surface wetness, drought indices, expert judgment, climate indices (e.g. SST-relationships) and the application of hydrologic models. At longer lead times, predictions of drought have most frequently been made on the basis of GCM ensembles, with subsequent downscaling of those to scales over which hydrologic predictions can be made. This study focuses on two important aspects of drought. First, we explore the causal hydro-climatic timeline of a drought event, namely (a) the lack of precipitation, which serves to reduce soil moisture and produce (b) a skewed Bowen ratio, i.e. comparatively more sensible heating (warming) with less ET, resulting in (c) anomalously warm conditions. We seek to assess the extent to which the lack of precipitation contributes to warming temperatures, and the further effects of that warming on hydrology and the severity of drought impacts. An ensemble of GCM simulations will be used to explore the evolution of the land surface energy budget during a recent Great Plains drought event, which will subsequently be used to drive a hydrologic model. Second, we examine the impacts of the critical assumptions relating climatic variables with water demand, specifically the relationship between potential evapotranspiration (PET) and temperature. The common oversimplification in relating PET to temperature is explored against a more physically consistent energy balance estimate of PET, using the Penman-Monteith approach and the hydrologic impacts are presented. Results from this work are anticipated to have broad relevance for future water management

  2. Mapping (dis)agreement in hydrologic projections

    Science.gov (United States)

    Melsen, Lieke A.; Addor, Nans; Mizukami, Naoki; Newman, Andrew J.; Torfs, Paul J. J. F.; Clark, Martyn P.; Uijlenhoet, Remko; Teuling, Adriaan J.

    2018-03-01

    Hydrologic projections are of vital socio-economic importance. However, they are also prone to uncertainty. In order to establish a meaningful range of storylines to support water managers in decision making, we need to reveal the relevant sources of uncertainty. Here, we systematically and extensively investigate uncertainty in hydrologic projections for 605 basins throughout the contiguous US. We show that in the majority of the basins, the sign of change in average annual runoff and discharge timing for the period 2070-2100 compared to 1985-2008 differs among combinations of climate models, hydrologic models, and parameters. Mapping the results revealed that different sources of uncertainty dominate in different regions. Hydrologic model induced uncertainty in the sign of change in mean runoff was related to snow processes and aridity, whereas uncertainty in both mean runoff and discharge timing induced by the climate models was related to disagreement among the models regarding the change in precipitation. Overall, disagreement on the sign of change was more widespread for the mean runoff than for the discharge timing. The results demonstrate the need to define a wide range of quantitative hydrologic storylines, including parameter, hydrologic model, and climate model forcing uncertainty, to support water resource planning.

  3. Evaporation in hydrology and meteorology

    NARCIS (Netherlands)

    Brandsma, T.

    1990-01-01

    In this paper the role of evaporation in hydrology and meteorology is discussed, with the emphasis on hydrology. The basic theory of evaporation is given and methods to determine evaporation are presented. Some applications of evaporation studies in literature are given in order to illustrate the

  4. Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics

    DEFF Research Database (Denmark)

    Osinalde, Nerea; Moss, Helle; Arrizabalaga, Onetsine

    2011-01-01

    among which 79 were found with increased abundance in the tyrosine-phosphorylated complexes, including several previously not reported IL-2 downstream effectors. Combinatorial site-specific phosphoproteomic analysis resulted in identification of 99 phosphorylated sites mapping to the identified proteins...... with increased abundance in the tyrosine-phosphorylated complexes, of which 34 were not previously described. In addition, chemical inhibition of the identified IL-2-mediated JAK, PI3K and MAPK signaling pathways, resulted in distinct alteration on the IL-2 dependent proliferation....

  5. Hydrology: The interdisciplinary science of water

    Science.gov (United States)

    Vogel, Richard M.; Lall, Upmanu; Cai, Ximing; Rajagopalan, Balaji; Weiskel, Peter K.; Hooper, Richard P.; Matalas, Nicholas C.

    2015-01-01

    We live in a world where biophysical and social processes are tightly coupled. Hydrologic systems change in response to a variety of natural and human forces such as climate variability and change, water use and water infrastructure, and land cover change. In turn, changes in hydrologic systems impact socioeconomic, ecological, and climate systems at a number of scales, leading to a coevolution of these interlinked systems. The Harvard Water Program, Hydrosociology, Integrated Water Resources Management, Ecohydrology, Hydromorphology, and Sociohydrology were all introduced to provide distinct, interdisciplinary perspectives on water problems to address the contemporary dynamics of human interaction with the hydrosphere and the evolution of the Earth’s hydrologic systems. Each of them addresses scientific, social, and engineering challenges related to how humans influence water systems and vice versa. There are now numerous examples in the literature of how holistic approaches can provide a structure and vision of the future of hydrology. We review selected examples, which taken together, describe the type of theoretical and applied integrated hydrologic analyses and associated curricular content required to address the societal issue of water resources sustainability. We describe a modern interdisciplinary science of hydrology needed to develop an in-depth understanding of the dynamics of the connectedness between human and natural systems and to determine effective solutions to resolve the complex water problems that the world faces today. Nearly, every theoretical hydrologic model introduced previously is in need of revision to accommodate how climate, land, vegetation, and socioeconomic factors interact, change, and evolve over time.

  6. Towards simplification of hydrologic modeling: identification of dominant processes

    Directory of Open Access Journals (Sweden)

    S. L. Markstrom

    2016-11-01

    Full Text Available parameter hydrologic model, has been applied to the conterminous US (CONUS. Parameter sensitivity analysis was used to identify: (1 the sensitive input parameters and (2 particular model output variables that could be associated with the dominant hydrologic process(es. Sensitivity values of 35 PRMS calibration parameters were computed using the Fourier amplitude sensitivity test procedure on 110 000 independent hydrologically based spatial modeling units covering the CONUS and then summarized to process (snowmelt, surface runoff, infiltration, soil moisture, evapotranspiration, interflow, baseflow, and runoff and model performance statistic (mean, coefficient of variation, and autoregressive lag 1. Identified parameters and processes provide insight into model performance at the location of each unit and allow the modeler to identify the most dominant process on the basis of which processes are associated with the most sensitive parameters. The results of this study indicate that: (1 the choice of performance statistic and output variables has a strong influence on parameter sensitivity, (2 the apparent model complexity to the modeler can be reduced by focusing on those processes that are associated with sensitive parameters and disregarding those that are not, (3 different processes require different numbers of parameters for simulation, and (4 some sensitive parameters influence only one hydrologic process, while others may influence many.

  7. Towards simplification of hydrologic modeling: Identification of dominant processes

    Science.gov (United States)

    Markstrom, Steven; Hay, Lauren E.; Clark, Martyn P.

    2016-01-01

    The Precipitation–Runoff Modeling System (PRMS), a distributed-parameter hydrologic model, has been applied to the conterminous US (CONUS). Parameter sensitivity analysis was used to identify: (1) the sensitive input parameters and (2) particular model output variables that could be associated with the dominant hydrologic process(es). Sensitivity values of 35 PRMS calibration parameters were computed using the Fourier amplitude sensitivity test procedure on 110 000 independent hydrologically based spatial modeling units covering the CONUS and then summarized to process (snowmelt, surface runoff, infiltration, soil moisture, evapotranspiration, interflow, baseflow, and runoff) and model performance statistic (mean, coefficient of variation, and autoregressive lag 1). Identified parameters and processes provide insight into model performance at the location of each unit and allow the modeler to identify the most dominant process on the basis of which processes are associated with the most sensitive parameters. The results of this study indicate that: (1) the choice of performance statistic and output variables has a strong influence on parameter sensitivity, (2) the apparent model complexity to the modeler can be reduced by focusing on those processes that are associated with sensitive parameters and disregarding those that are not, (3) different processes require different numbers of parameters for simulation, and (4) some sensitive parameters influence only one hydrologic process, while others may influence many

  8. Improving student comprehension of the interconnectivity of the hydrologic cycle with a novel 'hydrology toolbox', integrated watershed model, and companion textbook

    Science.gov (United States)

    Huning, L. S.; Margulis, S. A.

    2013-12-01

    Concepts in introductory hydrology courses are often taught in the context of process-based modeling that ultimately is integrated into a watershed model. In an effort to reduce the learning curve associated with applying hydrologic concepts to real-world applications, we developed and incorporated a 'hydrology toolbox' that complements a new, companion textbook into introductory undergraduate hydrology courses. The hydrology toolbox contains the basic building blocks (functions coded in MATLAB) for an integrated spatially-distributed watershed model that makes hydrologic topics (e.g. precipitation, snow, radiation, evaporation, unsaturated flow, infiltration, groundwater, and runoff) more user-friendly and accessible for students. The toolbox functions can be used in a modular format so that students can study individual hydrologic processes and become familiar with the hydrology toolbox. This approach allows such courses to emphasize understanding and application of hydrologic concepts rather than computer coding or programming. While topics in introductory hydrology courses are often introduced and taught independently or semi-independently, they are inherently interconnected. These toolbox functions are therefore linked together at the end of the course to reinforce a holistic understanding of how these hydrologic processes are measured, interconnected, and modeled. They are integrated into a spatially-distributed watershed model or numerical laboratory where students can explore a range of topics such as rainfall-runoff modeling, urbanization, deforestation, watershed response to changes in parameters or forcings, etc. Model output can readily be visualized and analyzed by students to understand watershed response in a real river basin or a simple 'toy' basin. These tools complement the textbook, each of which has been well received by students in multiple hydrology courses with various disciplinary backgrounds. The same governing equations that students have

  9. Hydrologic characterization for Spring Creek and hydrologic budget and model scenarios for Sheridan Lake, South Dakota, 1962-2007

    Science.gov (United States)

    Driscoll, Daniel G.; Norton, Parker A.

    2009-01-01

    The U.S. Geological Survey cooperated with South Dakota Game, Fish and Parks to characterize hydrologic information relevant to management of water resources associated with Sheridan Lake, which is formed by a dam on Spring Creek. This effort consisted primarily of characterization of hydrologic data for a base period of 1962 through 2006, development of a hydrologic budget for Sheridan Lake for this timeframe, and development of an associated model for simulation of storage deficits and drawdown in Sheridan Lake for hypothetical release scenarios from the lake. Historically, the dam has been operated primarily as a 'pass-through' system, in which unregulated outflows pass over the spillway; however, the dam recently was retrofitted with an improved control valve system that would allow controlled releases of about 7 cubic feet per second (ft3/s) or less from a fixed depth of about 60 feet (ft). Development of a hydrologic budget for Sheridan Lake involved compilation, estimation, and characterization of data sets for streamflow, precipitation, and evaporation. The most critical data need was for extrapolation of available short-term streamflow records for Spring Creek to be used as the long-term inflow to Sheridan Lake. Available short-term records for water years (WY) 1991-2004 for a gaging station upstream from Sheridan Lake were extrapolated to WY 1962-2006 on the basis of correlations with streamflow records for a downstream station and for stations located along two adjacent streams. Comparisons of data for the two streamflow-gaging stations along Spring Creek indicated that tributary inflow is approximately proportional to the intervening drainage area, which was used as a means of estimating tributary inflow for the hydrologic budget. Analysis of evaporation data shows that sustained daily rates may exceed maximum monthly rates by a factor of about two. A long-term (1962-2006) hydrologic budget was developed for computation of reservoir outflow from

  10. Delineating wetland catchments and modeling hydrologic connectivity using lidar data and aerial imagery

    Directory of Open Access Journals (Sweden)

    Q. Wu

    2017-07-01

    Full Text Available In traditional watershed delineation and topographic modeling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM to enforce flow continuity of water across the topographic surface to the watershed outlets. In reality, however, many depressions in the DEM are actual wetland landscape features with seasonal to permanent inundation patterning characterized by nested hierarchical structures and dynamic filling–spilling–merging surface-water hydrological processes. Differentiating and appropriately processing such ecohydrologically meaningful features remains a major technical terrain-processing challenge, particularly as high-resolution spatial data are increasingly used to support modeling and geographic analysis needs. The objectives of this study were to delineate hierarchical wetland catchments and model their hydrologic connectivity using high-resolution lidar data and aerial imagery. The graph-theory-based contour tree method was used to delineate the hierarchical wetland catchments and characterize their geometric and topological properties. Potential hydrologic connectivity between wetlands and streams were simulated using the least-cost-path algorithm. The resulting flow network delineated potential flow paths connecting wetland depressions to each other or to the river network on scales finer than those available through the National Hydrography Dataset. The results demonstrated that our proposed framework is promising for improving overland flow simulation and hydrologic connectivity analysis.

  11. Increased Hydrologic Connectivity: Consequences of Reduced Water Storage Capacity in the Delmarva Peninsula (U.S.)

    Science.gov (United States)

    Mclaughlin, D. L.; Jones, C. N.; Evenson, G. R.; Golden, H. E.; Lane, C.; Alexander, L. C.; Lang, M.

    2017-12-01

    Combined geospatial and modeling approaches are required to fully enumerate wetland hydrologic connectivity and downstream effects. Here, we utilized both geospatial analysis and hydrologic modeling to explore drivers and consequences of modified surface water connectivity in the Delmarva Peninsula, with particular focus on increased connectivity via pervasive wetland ditching. Our geospatial analysis quantified both historical and contemporary wetland storage capacity across the region, and suggests that over 70% of historical storage capacity has been lost due to this ditching. Building upon this analysis, we applied a catchment-scale model to simulate implications of reduced storage capacity on catchment-scale hydrology. In short, increased connectivity (and concomitantly reduced wetland water storage capacity) decreases catchment inundation extent and spatial heterogeneity, shortens cumulative residence times, and increases downstream flow variation with evident effects on peak and baseflow dynamics. As such, alterations in connectivity have implications for hydrologically mediated functions in catchments (e.g., nutrient removal) and downstream systems (e.g., maintenance of flow for aquatic habitat). Our work elucidates such consequences in Delmarva Peninsula while also providing new tools for broad application to target wetland restoration and conservation. Views expressed are those of the authors and do not necessarily reflect policies of the US EPA or US FWS.

  12. A novel method to identify hub pathways of rheumatoid arthritis based on differential pathway networks.

    Science.gov (United States)

    Wei, Shi-Tong; Sun, Yong-Hua; Zong, Shi-Hua

    2017-09-01

    The aim of the current study was to identify hub pathways of rheumatoid arthritis (RA) using a novel method based on differential pathway network (DPN) analysis. The present study proposed a DPN where protein‑protein interaction (PPI) network was integrated with pathway‑pathway interactions. Pathway data was obtained from background PPI network and the Reactome pathway database. Subsequently, pathway interactions were extracted from the pathway data by building randomized gene‑gene interactions and a weight value was assigned to each pathway interaction using Spearman correlation coefficient (SCC) to identify differential pathway interactions. Differential pathway interactions were visualized using Cytoscape to construct a DPN. Topological analysis was conducted to identify hub pathways that possessed the top 5% degree distribution of DPN. Modules of DPN were mined according to ClusterONE. A total of 855 pathways were selected to build pathway interactions. By filtrating pathway interactions of weight values >0.7, a DPN with 312 nodes and 791 edges was obtained. Topological degree analysis revealed 15 hub pathways, such as heparan sulfate/heparin‑glycosaminoglycan (HS‑GAG) degradation, HS‑GAG metabolism and keratan sulfate degradation for RA based on DPN. Furthermore, hub pathways were also important in modules, which validated the significance of hub pathways. In conclusion, the proposed method is a computationally efficient way to identify hub pathways of RA, which identified 15 hub pathways that may be potential biomarkers and provide insight to future investigation and treatment of RA.

  13. Hydrology submission for Middlesex County, NJ

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  14. DCS Hydrology Submission for Orleans LA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  15. APPROXIMATE HYDROLOGY, ROSS COUNTY,OH USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  16. DCS Hydrology Submission for Denton TX

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  17. APPROXIMATE HYDROLOGY, IOSCO COUNTY, MI USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  18. APPROXIMATE HYDROLOGY, FAIRFIELD COUNTY,OH USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  19. APPROXIMATE HYDROLOGY, HIGHLAND COUNTY,OH USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  20. APPROXIMATE HYDROLOGY, ALPENA COUNTY, MI USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  1. HYDROLOGY, UPPER CUMBERLAND WATERSHED, KENTUCKY USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  2. DCS Hydrology, Santa Clara County, California

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  3. APPROXIMATE HYDROLOGY, SCIOTO COUNTY,OH USA

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  4. Modelling the effect of land use change on hydrological model ...

    African Journals Online (AJOL)

    Modelling the effect of land use change on hydrological model parameters via linearized calibration method in the upstream of Huaihe River Basin, China. ... is presented, based on the analysis of the problems of the objective function of the ...

  5. Cloning and Expression Analysis of MEP Pathway Enzyme-encoding Genes in Osmanthus fragrans

    Directory of Open Access Journals (Sweden)

    Chen Xu

    2016-09-01

    Full Text Available The 2-C-methyl-d-erythritol 4-phosphate (MEP pathway is responsible for the biosynthesis of many crucial secondary metabolites, such as carotenoids, monoterpenes, plastoquinone, and tocopherols. In this study, we isolated and identified 10 MEP pathway genes in the important aromatic plant sweet osmanthus (Osmanthus fragrans. Multiple sequence alignments revealed that 10 MEP pathway genes shared high identities with other reported proteins. The genes showed distinctive expression profiles in various tissues, or at different flower stages and diel time points. The qRT-PCR results demonstrated that these genes were highly expressed in inflorescences, which suggested a tissue-specific transcript pattern. Our results also showed that OfDXS1, OfDXS2, and OfHDR1 had a clear diurnal oscillation pattern. The isolation and expression analysis provides a strong foundation for further research on the MEP pathway involved in gene function and molecular evolution, and improves our understanding of the molecular mechanism underlying this pathway in plants.

  6. Weather radar rainfall data in urban hydrology

    DEFF Research Database (Denmark)

    Thorndahl, Søren; Einfalt, Thomas; Willems, Patrick

    2017-01-01

    estimation, radar data adjustment and data quality, and (3) nowcasting of radar rainfall and real-time applications. Based on these three fields of research, the paper provides recommendations based on an updated overview of shortcomings, gains, and novel developments in relation to urban hydrological...... applications. The paper also reviews how the focus in urban hydrology research has shifted over the last decade to fields such as climate change impacts, resilience of urban areas to hydrological extremes, and online prediction/warning systems. It is discussed how radar rainfall data can add value......Application of weather radar data in urban hydrological applications has evolved significantly during the past decade as an alternative to traditional rainfall observations with rain gauges. Advances in radar hardware, data processing, numerical models, and emerging fields within urban hydrology...

  7. Hyphenated hydrology: Interdisciplinary evolution of water resource science

    Science.gov (United States)

    McCurley, Kathryn L.; Jawitz, James W.

    2017-04-01

    Hydrology has advanced considerably as a scientific discipline since its recognized inception in the mid-twentieth century. Modern water resource related questions have forced adaptation from exclusively physical or engineering science viewpoints toward a deliberate interdisciplinary context. Over the past few decades, many of the eventual manifestations of this evolution were foreseen by prominent expert hydrologists. However, their narrative descriptions have lacked substantial quantification. This study addressed that gap by measuring the prevalence of and analyzing the relationships between the terms most frequently used by hydrologists to define and describe their research. We analyzed 16,591 journal article titles from 1965-2015 in Water Resources Research, through which the scientific dialogue and its time-sensitive progression emerged. Our word frequency and term cooccurrence network results revealed the dynamic timing of the lateral movement of hydrology across multiple disciplines as well as the deepening of scientific discourse with respect to traditional hydrologic questions. The conversation among water resource scientists surrounding the hydrologic subdisciplines of catchment-hydrology, hydro-meteorology, socio-hydrology, hydro-climatology, and eco-hydrology gained statistically significant momentum in the analyzed time period, while that of hydro-geology and contaminant-hydrology experienced periods of increase followed by significant decline. This study concludes that formerly exotic disciplines can potentially modify hydrology, prompting new insights and inspiring unconventional perspectives on old questions that may have otherwise become obsolete.

  8. Metabolic pathway analysis and kinetic studies for production of nattokinase in Bacillus subtilis.

    Science.gov (United States)

    Unrean, Pornkamol; Nguyen, Nhung H A

    2013-01-01

    We have constructed a reaction network model of Bacillus subtilis. The model was analyzed using a pathway analysis tool called elementary mode analysis (EMA). The analysis tool was used to study the network capabilities and the possible effects of altered culturing conditions on the production of a fibrinolytic enzyme, nattokinase (NK) by B. subtilis. Based on all existing metabolic pathways, the maximum theoretical yield for NK synthesis in B. subtilis under different substrates and oxygen availability was predicted and the optimal culturing condition for NK production was identified. To confirm model predictions, experiments were conducted by testing these culture conditions for their influence on NK activity. The optimal culturing conditions were then applied to batch fermentation, resulting in high NK activity. The EMA approach was also applied for engineering B. subtilis metabolism towards the most efficient pathway for NK synthesis by identifying target genes for deletion and overexpression that enable the cell to produce NK at the maximum theoretical yield. The consistency between experiments and model predictions proves the feasibility of EMA being used to rationally design culture conditions and genetic manipulations for the efficient production of desired products.

  9. Association genetics and transcriptome analysis reveal a gibberellin-responsive pathway involved in regulating photosynthesis.

    Science.gov (United States)

    Xie, Jianbo; Tian, Jiaxing; Du, Qingzhang; Chen, Jinhui; Li, Ying; Yang, Xiaohui; Li, Bailian; Zhang, Deqiang

    2016-05-01

    Gibberellins (GAs) regulate a wide range of important processes in plant growth and development, including photosynthesis. However, the mechanism by which GAs regulate photosynthesis remains to be understood. Here, we used multi-gene association to investigate the effect of genes in the GA-responsive pathway, as constructed by RNA sequencing, on photosynthesis, growth, and wood property traits, in a population of 435 Populus tomentosa By analyzing changes in the transcriptome following GA treatment, we identified many key photosynthetic genes, in agreement with the observed increase in measurements of photosynthesis. Regulatory motif enrichment analysis revealed that 37 differentially expressed genes related to photosynthesis shared two essential GA-related cis-regulatory elements, the GA response element and the pyrimidine box. Thus, we constructed a GA-responsive pathway consisting of 47 genes involved in regulating photosynthesis, including GID1, RGA, GID2, MYBGa, and 37 photosynthetic differentially expressed genes. Single nucleotide polymorphism (SNP)-based association analysis showed that 142 SNPs, representing 40 candidate genes in this pathway, were significantly associated with photosynthesis, growth, and wood property traits. Epistasis analysis uncovered interactions between 310 SNP-SNP pairs from 37 genes in this pathway, revealing possible genetic interactions. Moreover, a structural gene-gene matrix based on a time-course of transcript abundances provided a better understanding of the multi-gene pathway affecting photosynthesis. The results imply a functional role for these genes in mediating photosynthesis, growth, and wood properties, demonstrating the potential of combining transcriptome-based regulatory pathway construction and genetic association approaches to detect the complex genetic networks underlying quantitative traits. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights

  10. Predicting Geomorphic and Hydrologic Risks after Wildfire Using Harmonic and Stochastic Analyses

    Science.gov (United States)

    Mikesell, J.; Kinoshita, A. M.; Florsheim, J. L.; Chin, A.; Nourbakhshbeidokhti, S.

    2017-12-01

    Wildfire is a landscape-scale disturbance that often alters hydrological processes and sediment flux during subsequent storms. Vegetation loss from wildfires induce changes to sediment supply such as channel erosion and sedimentation and streamflow magnitude or flooding. These changes enhance downstream hazards, threatening human populations and physical aquatic habitat over various time scales. Using Williams Canyon, a basin burned by the Waldo Canyon Fire (2012) as a case study, we utilize deterministic and statistical modeling methods (Fourier series and first order Markov chain) to assess pre- and post-fire geomorphic and hydrologic characteristics, including of precipitation, enhanced vegetation index (EVI, a satellite-based proxy of vegetation biomass), streamflow, and sediment flux. Local precipitation, terrestrial Light Detection and Ranging (LiDAR) scanning, and satellite-based products are used for these time series analyses. We present a framework to assess variability of periodic and nonperiodic climatic and multivariate trends to inform development of a post-wildfire risk assessment methodology. To establish the extent to which a wildfire affects hydrologic and geomorphic patterns, a Fourier series was used to fit pre- and post-fire geomorphic and hydrologic characteristics to yearly temporal cycles and subcycles of 6, 4, 3, and 2.4 months. These cycles were analyzed using least-squares estimates of the harmonic coefficients or amplitudes of each sub-cycle's contribution to fit the overall behavior of a Fourier series. The stochastic variances of these characteristics were analyzed by composing first-order Markov models and probabilistic analysis through direct likelihood estimates. Preliminary results highlight an increased dependence of monthly post-fire hydrologic characteristics on 12 and 6-month temporal cycles. This statistical and probabilistic analysis provides a basis to determine the impact of wildfires on the temporal dependence of

  11. Strengthening of the hydrological cycle in future scenarios: atmospheric energy and water balance perspective

    Directory of Open Access Journals (Sweden)

    A. Alessandri

    2012-11-01

    Full Text Available Future climate scenarios experiencing global warming are expected to strengthen the hydrological cycle during the 21st century (21C. We analyze the strengthening of the global-scale increase in precipitation from the perspective of changes in whole atmospheric water and energy balances. By combining energy and water equations for the whole atmosphere, we obtain constraints for the changes in surface fluxes and partitioning at the surface between sensible and latent components. We investigate the differences in the strengthening of the hydrological cycle in two centennial simulations performed with an Earth system model forced with specified atmospheric concentration pathways. Alongside the Special Report on Emissions Scenario (SRES A1B, which is a medium-high non-mitigation scenario, we consider a new aggressive-mitigation scenario (E1 with reduced fossil fuel use for energy production aimed at stabilizing global warming below 2 K.

    Our results show that the mitigation scenario effectively constrains the global warming with a stabilization below 2 K with respect to the 1950–2000 historical period. On the other hand, the E1 precipitation does not follow the temperature field toward a stabilization path but continues to increase over the mitigation period. Quite unexpectedly, the mitigation scenario is shown to strengthen the hydrological cycle even more than SRES A1B till around 2070. We show that this is mostly a consequence of the larger increase in the negative radiative imbalance of atmosphere in E1 compared to A1B. This appears to be primarily related to decreased sulfate aerosol concentration in E1, which considerably reduces atmospheric absorption of solar radiation compared to A1B.

    The last decades of the 21C show a marked increase in global precipitation in A1B compared to E1, despite the fact that the two scenarios display almost the same overall increase of radiative imbalance with respect to the 20th century. Our

  12. The relation between geometry, hydrology and stability of complex hillslopes examined using low-dimensional hydrological models

    NARCIS (Netherlands)

    Talebi, A.

    2008-01-01

    Key words: Hillslope geometry, Hillslope hydrology, Hillslope stability, Complex hillslopes, Modeling shallow landslides, HSB model, HSB-SM model.

    The hydrologic response of a hillslope to rainfall involves a complex, transient saturated-unsaturated interaction that usually leads to a

  13. Use of Isotopic Techniques for the Assessment of Hydrological Interaction Surface Water and Groundwater. Rio Man - Cienaga Colombia

    International Nuclear Information System (INIS)

    Palacio B, P.; Betancur V, T.; Dapena, C.

    2011-01-01

    This job integrates the first results from the studies ''Conceptual Hydrological Model for the middle and lower parts of the Man River basin using hydrological, hydrochemical and isotopic techniques'' (Palacio, 2011) and ''Hydrochemical and Isotopic techniques for the assessment of hydrological processes in the the wetlands of Bajo Cauca Antioquia'' (University of Antioquia and International Atomic Energy Agency (IAEA). The Man river basin covers an area of 688 km 2 ; with temperatures ranging from 25 to 30 o C; The average annual rainfall is 2.800 mm. The geology of the area is composed mainly of clastic sedimentary rocks of continental origin. A hydrological model of interaction between surface water and groundwater for the lower middle of the Man River basin was obtained by the use of hydrological analysis techniques. This model was refined, adjusted and validated using isotope techniques based mainly on the analysis of spatial and temporal variance of stable isotopes found in rain water, surface bodies of water such as streams and wetlands, and in an unconfined aquifer.

  14. Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways.

    Science.gov (United States)

    Lee, Yun; Lafontaine Rivera, Jimmy G; Liao, James C

    2014-09-01

    Metabolic pathways in cells must be sufficiently robust to tolerate fluctuations in expression levels and changes in environmental conditions. Perturbations in expression levels may lead to system failure due to the disappearance of a stable steady state. Increasing evidence has suggested that biological networks have evolved such that they are intrinsically robust in their network structure. In this article, we presented Ensemble Modeling for Robustness Analysis (EMRA), which combines a continuation method with the Ensemble Modeling approach, for investigating the robustness issue of non-native pathways. EMRA investigates a large ensemble of reference models with different parameters, and determines the effects of parameter drifting until a bifurcation point, beyond which a stable steady state disappears and system failure occurs. A pathway is considered to have high bifurcational robustness if the probability of system failure is low in the ensemble. To demonstrate the utility of EMRA, we investigate the bifurcational robustness of two synthetic central metabolic pathways that achieve carbon conservation: non-oxidative glycolysis and reverse glyoxylate cycle. With EMRA, we determined the probability of system failure of each design and demonstrated that alternative designs of these pathways indeed display varying degrees of bifurcational robustness. Furthermore, we demonstrated that target selection for flux improvement should consider the trade-offs between robustness and performance. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

  15. Sharing hydrological knowledge: an international comparison of hydrological models in the Meuse River Basin

    Science.gov (United States)

    Bouaziz, Laurène; Sperna Weiland, Frederiek; Drogue, Gilles; Brauer, Claudia; Weerts, Albrecht

    2015-04-01

    International collaboration between institutes and universities working and studying the same transboundary basin is needed for consensus building around possible effects of climate change and climate adaptation measures. Education, experience and expert knowledge of the hydrological community have resulted in the development of a great variety of model concepts, calibration and analysis techniques. Intercomparison could be a first step into consensus modeling or an ensemble based modeling strategy. Besides these practical objectives, such an intercomparison offers the opportunity to explore different ranges of models and learn from each other, hopefully increasing the insight into the hydrological processes that play a role in the transboundary basin. In this experiment, different international research groups applied their rainfall-runoff model in the Ourthe, a Belgium sub-catchment of the Meuse. Data preparation involved the interpolation of hourly precipitation station data collected and owned by the Service Public de Wallonie1 and the freely available E-OBS dataset for daily temperature (Haylock et al., 2008). Daily temperature was disaggregated to hourly values and potential evaporation was derived with the Hargreaves formula. The data was made available to the researchers through an FTP server. The protocol for the modeling involved a split-sample calibration and validation for pre-defined periods. Objective functions for calibration were fixed but the calibration algorithm was a free choice of the research groups. The selection of calibration algorithm was considered model dependent because lumped as well as computationally less efficient distributed models were used. For each model, an ensemble of best performing parameter sets was selected and several performance metrics enabled to assess the models' abilities to simulate discharge. The aim of this experiment is to identify those model components and structures that increase model performance and may best

  16. netherland hydrological modeling instrument

    Science.gov (United States)

    Hoogewoud, J. C.; de Lange, W. J.; Veldhuizen, A.; Prinsen, G.

    2012-04-01

    Netherlands Hydrological Modeling Instrument A decision support system for water basin management. J.C. Hoogewoud , W.J. de Lange ,A. Veldhuizen , G. Prinsen , The Netherlands Hydrological modeling Instrument (NHI) is the center point of a framework of models, to coherently model the hydrological system and the multitude of functions it supports. Dutch hydrological institutes Deltares, Alterra, Netherlands Environmental Assessment Agency, RWS Waterdienst, STOWA and Vewin are cooperating in enhancing the NHI for adequate decision support. The instrument is used by three different ministries involved in national water policy matters, for instance the WFD, drought management, manure policy and climate change issues. The basis of the modeling instrument is a state-of-the-art on-line coupling of the groundwater system (MODFLOW), the unsaturated zone (metaSWAP) and the surface water system (MOZART-DM). It brings together hydro(geo)logical processes from the column to the basin scale, ranging from 250x250m plots to the river Rhine and includes salt water flow. The NHI is validated with an eight year run (1998-2006) with dry and wet periods. For this run different parts of the hydrology have been compared with measurements. For instance, water demands in dry periods (e.g. for irrigation), discharges at outlets, groundwater levels and evaporation. A validation alone is not enough to get support from stakeholders. Involvement from stakeholders in the modeling process is needed. There fore to gain sufficient support and trust in the instrument on different (policy) levels a couple of actions have been taken: 1. a transparent evaluation of modeling-results has been set up 2. an extensive program is running to cooperate with regional waterboards and suppliers of drinking water in improving the NHI 3. sharing (hydrological) data via newly setup Modeling Database for local and national models 4. Enhancing the NHI with "local" information. The NHI is and has been used for many

  17. Toward seamless hydrologic predictions across spatial scales

    Directory of Open Access Journals (Sweden)

    L. Samaniego

    2017-09-01

    Full Text Available Land surface and hydrologic models (LSMs/HMs are used at diverse spatial resolutions ranging from catchment-scale (1–10 km to global-scale (over 50 km applications. Applying the same model structure at different spatial scales requires that the model estimates similar fluxes independent of the chosen resolution, i.e., fulfills a flux-matching condition across scales. An analysis of state-of-the-art LSMs and HMs reveals that most do not have consistent hydrologic parameter fields. Multiple experiments with the mHM, Noah-MP, PCR-GLOBWB, and WaterGAP models demonstrate the pitfalls of deficient parameterization practices currently used in most operational models, which are insufficient to satisfy the flux-matching condition. These examples demonstrate that J. Dooge's 1982 statement on the unsolved problem of parameterization in these models remains true. Based on a review of existing parameter regionalization techniques, we postulate that the multiscale parameter regionalization (MPR technique offers a practical and robust method that provides consistent (seamless parameter and flux fields across scales. Herein, we develop a general model protocol to describe how MPR can be applied to a particular model and present an example application using the PCR-GLOBWB model. Finally, we discuss potential advantages and limitations of MPR in obtaining the seamless prediction of hydrological fluxes and states across spatial scales.

  18. Toward seamless hydrologic predictions across spatial scales

    Science.gov (United States)

    Samaniego, Luis; Kumar, Rohini; Thober, Stephan; Rakovec, Oldrich; Zink, Matthias; Wanders, Niko; Eisner, Stephanie; Müller Schmied, Hannes; Sutanudjaja, Edwin H.; Warrach-Sagi, Kirsten; Attinger, Sabine

    2017-09-01

    Land surface and hydrologic models (LSMs/HMs) are used at diverse spatial resolutions ranging from catchment-scale (1-10 km) to global-scale (over 50 km) applications. Applying the same model structure at different spatial scales requires that the model estimates similar fluxes independent of the chosen resolution, i.e., fulfills a flux-matching condition across scales. An analysis of state-of-the-art LSMs and HMs reveals that most do not have consistent hydrologic parameter fields. Multiple experiments with the mHM, Noah-MP, PCR-GLOBWB, and WaterGAP models demonstrate the pitfalls of deficient parameterization practices currently used in most operational models, which are insufficient to satisfy the flux-matching condition. These examples demonstrate that J. Dooge's 1982 statement on the unsolved problem of parameterization in these models remains true. Based on a review of existing parameter regionalization techniques, we postulate that the multiscale parameter regionalization (MPR) technique offers a practical and robust method that provides consistent (seamless) parameter and flux fields across scales. Herein, we develop a general model protocol to describe how MPR can be applied to a particular model and present an example application using the PCR-GLOBWB model. Finally, we discuss potential advantages and limitations of MPR in obtaining the seamless prediction of hydrological fluxes and states across spatial scales.

  19. Hydrological functioning of West-African inland valleys explored with a critical zone model

    Science.gov (United States)

    Hector, B.; Cohard, J. M.; Séguis, L.; Peugeot, C.; Galle, S.

    2017-12-01

    In west Africa, recurrent floods are still a major issue, and hydropower has been recognized as an important development pathway. Furthermore, inland valleys carry an important agronomic potential, which could meet the necessary increase of the crop production associated with the strong demographic rates of the region. This can lead to land cover and subsequent hydrologic changes. However, the hydrological role of the inland valleys in the humid, hard rock-dominated Sudanian area is not yet well understood, specifically for streamflow (Q) generation processes. We address both the questions of the hydrological functioning of inland valleys in the Sudanian area of West-Africa and the impact of land cover changes on these systems through deterministic sensitivity experiments using a physically-based critical zone model (ParFlow-CLM) applied on a synthetic catchment which comprises an inland valley. The conceptual lithological/pedological model for the catchment includes the main features of such a hydrological elementary unit derived from the literature and from a previously published model based on data from a highly instrumented elementary catchment. Model forcings and parameters are based on data from the AMMA-CATCH observation service and multiple field experiments. We found yearly water budgets were much more sensitive to vegetation distribution than lithology features of the inland valley (presence of the low permeability layer commonly found below the inland valley and the hydrodynamic properties of upstream and lateral areas). Yearly evapotranspiration budget between a fully tree-covered and an herbaceous-covered catchment increases between 6 and 21% of the precipitation of the year (depending on the tested cases) which reduces considerably the yearly streamflow budgets ( 30%). On the other hand, the lithology distribution has clear impacts on the spatial distribution of water storage dynamics.

  20. Eco-hydrological Responses to Soil and Water Conservation in the Jinghe River Basin

    Science.gov (United States)

    Peng, H.; Jia, Y.; Qiu, Y.

    2011-12-01

    The Jinghe River Basin is one of the most serious soil erosion areas in the Loess Plateau. Many measures of soil and water conservation were applied in the basin. Terrestrial ecosystem model BIOME-BGC and distributed hydrological model WEP-L were used to build eco-hydrological model and verified by field observation and literature values. The model was applied in the Jinghe River Basin to analyze eco-hydrological responses under the scenarios of vegetation type change due to soil and water conservation polices. Four scenarios were set under the measures of conversion of cropland to forest, forestation on bare land, forestation on slope wasteland and planting grass on bare land. Analysis results show that the soil and water conservation has significant effects on runoff and the carbon cycle in the Jinghe River Basin: the average annual runoff would decrease and the average annual NPP and carbon storage would increase. Key words: soil and water conservation; conversion of cropland to forest; eco-hydrology response; the Jinghe River Basin