Why Mycophoris is not an orchid seedling, and why Synaptomitus is not a fungal symbiont within this fossil

DEFF Research Database (Denmark)

Selosse, Marc-Andre; Brundrett, Mark; Dearnaley, John

2017-01-01

A recent publication in Botany introduced two new taxa: a fossil orchid seed (Mycophoris) and a fossilized basidiomycete fungus (Synaptomitus) in an alleged relationship with this orchid, encased in 15–20 million year old Dominican amber (Poinar, G. 2017. Two new genera, Mycophoris gen. nov......., (Orchidaceae) and Synaptomitus gen. nov. (Basidiomycota) based on a fossil seed with developing embryo and associated fungus in Dominican amber. Botany, 95: 1–8). From the working knowledge of extant orchid seeds, seedlings, and mycorrhiza shared among us, we cannot support these interpretations. Here we...... analyse: (i) why Mycophoris may not be an orchid seed, (ii) why Mycophoris is not a germinating seed, (iii) why fungal hyphae and a symbiotic fungus are absent in Mycophoris, and (iv) why Synaptomitus is likely not a fossil basidiomycete....

Holzbecker's Orchids

DEFF Research Database (Denmark)

Rasmussen, Finn N.

2013-01-01

: one that concerns some of the depictions of orchids. Out of the 22 orchids depicted, 11 have been caricatured to exaggerate their resemblance to small birds, men and insects. The article considers this strange phenomenon in light of the historical meaning of the orchids....

Cross-amplification and characterization of microsatellite loci for the Neotropical orchid genus Epidendrum

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Fábio Pinheiro

2009-01-01

Full Text Available In this study we tested the cross-amplification of 33 microsatellite loci previously developed for two closely related Neotropical orchid genera (Epidendrum and Laelia. A set of ten loci were polymorphic across five examined species (20 individuals each with 2 to 15 alleles per locus. The mean expected and observed heterozygosity (average across species ranged from 0.34 to 0.82 and from 0.27 to 0.85, respectively. In addition we tested all loci in 35 species representative of the genus Epidendrum. Of these, 26 loci showed successful amplification. Cross-application of these loci represent a potential source of co-dominant markers for evolutionary, ecological and conservation studies in this important orchid genus.

Successful disinfection protocol for orchid seeds and influence of gelling agent on germination and growth

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Tomaž JEVŠNIK

2015-11-01

Full Text Available Artificial propagation of endangered orchid species is one of the most important actions of conservationists often jeopardized by low numbers of acquired seed, its contamination and viability. Disinfection and chemical composition of media are two of the most important factors contributing to better germination in temperate orchid species. The article deals with three world genera (Epidendrum nocturnum, Prosthechea garciana, Maxillaria rufescens and one commercial hybrid (Zygopetalum and describes an effective method of orchid seed disinfection carried out in a centrifuge. Germination percentages of all three genera and one hybrid were between 60 and 90 % from which we concluded that the risk of physical damage to the seeds by centrifugation is not significant. The time needed for disinfected seeds (E. nocturnum, P. garciana, M. rufescens to swell-form protocorms was 10 days shorter compared to undisinfected seeds (Zygopetalum hybrid - green capsule method and some other studies. Adequate wetting and stratification of the seed is very important for successful germination, which resembles processes in natural environment. Additionally, this method solves the problems of collecting and transferring the seeds after disinfection. It is also important that the time needed for disinfection is shorter, which is desirable for some sensitive species. Our study also focuses on importance of gelling agent, namely Gellan gum and agar, since we noticed an obvious superiority of the former in all phases of in vitro development.

Darwin's bee-trap: The kinetics of Catasetum, a new world orchid.

Science.gov (United States)

Nicholson, Charles C; Bales, James W; Palmer-Fortune, Joyce E; Nicholson, Robert G

2008-01-01

The orchid genera Catasetum employs a hair-trigger activated, pollen release mechanism, which forcibly attaches pollen sacs onto foraging insects in the New World tropics. This remarkable adaptation was studied extensively by Charles Darwin and he termed this rapid response "sensitiveness." Using high speed video cameras with a frame speed of 1000 fps, this rapid release was filmed and from the subsequent footage, velocity, speed, acceleration, force and kinetic energy were computed.

Development of Sequence-Based Microsatellite Marker for Phalaenopsis Orchid

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FATIMAH

2011-06-01

Full Text Available Phalaenopsis is one of the most interesting genera of orchids due to the members are often used as parents to produce hybrids. The establishment and development of highly reliable and discriminatory methods for identifying species and cultivars has become increasingly more important to plant breeders and members of the nursery industry. The aim of this research was to develop sequence-based microsatellite (eSSR markers for the Phalaenopsis orchid designed from the sequence of GenBank NCBI. Seventeen primers were designed and thirteen primers pairs could amplify the DNA giving the expected PCR product with polymorphism. A total of 51 alleles, with an average of 3 alleles per locus and polymorphism information content (PIC values at 0.674, were detected at the 16 SSR loci. Therefore, these markers could be used for identification of the Phalaenopsis orchid used in this study. Genetic similarity and principle coordinate analysis identified five major groups of Phalaenopsis sp. the first group consisted of P. amabilis, P. fuscata, P. javanica, and P. zebrine. The second group consisted of P. amabilis, P. amboinensis, P. bellina, P. floresens, and P. mannii. The third group consisted of P. bellina, P. cornucervi, P. cornucervi, P. violaceae sumatra, P. modesta. The forth group consisted of P. cornucervi and P. lueddemanniana, and the fifth group was P. amboinensis.

The importance of associations with saprotrophic non-Rhizoctonia fungi among fully mycoheterotrophic orchids is currently under-estimated: novel evidence from sub-tropical Asia.

Science.gov (United States)

Lee, Yung-I; Yang, Chih-Kai; Gebauer, Gerhard

2015-09-01

Most fully mycoheterotrophic (MH) orchids investigated to date are mycorrhizal with fungi that simultaneously form ectomycorrhizas with forest trees. Only a few MH orchids are currently known to be mycorrhizal with saprotrophic, mostly wood-decomposing, fungi instead of ectomycorrhizal fungi. This study provides evidence that the importance of associations between MH orchids and saprotrophic non-Rhizoctonia fungi is currently under-estimated. Using microscopic techniques and molecular approaches, mycorrhizal fungi were localized and identified for seven MH orchid species from four genera and two subfamilies, Vanilloideae and Epidendroideae, growing in four humid and warm sub-tropical forests in Taiwan. Carbon and nitrogen stable isotope natural abundances of MH orchids and autotrophic reference plants were used in order to elucidate the nutritional resources utilized by the orchids. Six out of the seven MH orchid species were mycorrhizal with either wood- or litter-decaying saprotrophic fungi. Only one orchid species was associated with ectomycorrhizal fungi. Stable isotope abundance patterns showed significant distinctions between orchids mycorrhizal with the three groups of fungal hosts. Mycoheterotrophic orchids utilizing saprotrophic non-Rhizoctonia fungi as a carbon and nutrient source are clearly more frequent than hitherto assumed. On the basis of this kind of nutrition, orchids can thrive in deeply shaded, light-limiting forest understoreys even without support from ectomycorrhizal fungi. Sub-tropical East Asia appears to be a hotspot for orchids mycorrhizal with saprotrophic non-Rhizoctonia fungi. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

The Doctrine of Signatures, Materia Medica of Orchids, and the Contributions of Doctor - Orchidologists.

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Pearn, John

2012-12-01

The heritage of medicine is written in many forms. One repository is to be found in the history of orchids, the world's largest family of flowering plants. Orchids were so named by Theophrastus (c.372-288 BC) who recorded their medicinal use as an aphrodisiac and the promoter of virility, in the context of the Doctrine of Signatures. Such use endured for millennia, and was recorded both by Paracelsus (1493-1551) and Linnaeus (1707-1778). The history of orchidology and medicine are entwined in four domains: (a) orchids and their historical materia medica, within the paradigm of the Doctrine of Signatures; (b) the enduring and extensive contemporary medicinal and culinary use of orchids such as Vanilla and salep extracts of Orchis; (c) the scientific contributions of doctors as orchidologists; and (d) the heritage of more than a hundred doctors' names in the scientific etymology of the Orchidaceae family. Prominent orchidologists have included the Scottish doctor-soldier and botanist, Robert Brown (1773-1858); the Director of the State Herbarium at Leyden and the Rijks Museum, Carl Ludwig Blume (1796-1862); and Dr William Sterling MD (1888-1967). Among the more than 1250 genus names (and 33,000 species) of orchids are the names of more than a hundred doctors, their lives and works perpetuated in the scientific etymology of this family of exotic, beautiful, flamboyant, intriguing and often expensive flowers. Generic names record the lives and works of such as Aristotle (384-322BC) in Aristotelia Loureiro 1790; Cadet de Gassicourt (1769-1821) in Cadetia Gaudichaud 1826; Sir Joseph Dalton Hooker (1817-1911) in Sirhookera O. Kuntze 1891; and Dr Theodore Daniel Vrydag Zynen (fl. 1820-1850) in Vrydagzynea Blume 1858. One of the principal horticultural genera of orchids, Brassavola, records the life and work of the Ferrara and Padua physician and botanist, Antonio Musa Brassavola (1500-1555). The first Slipper Orchid bred as a hybrid, Paphiopedilum harrisianum (by John

Mycorrhizal compatibility and symbiotic seed germination of orchids from the Coastal Range and Andes in south central Chile.

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Herrera, Hector; Valadares, Rafael; Contreras, Domingo; Bashan, Yoav; Arriagada, Cesar

2017-04-01

Little is known about Orchidaceae plants in Chile and their mycorrhizal associations, a key issue for designing protective actions for endangered species. We investigated root fungi from seven terrestrial orchid species to identify potential mycorrhizal fungi. The main characteristics of Rhizoctonia-like fungi were observed under light microscopy, and isolates were identified through PCR-ITS sequencing. Molecular identification of fungal sequences showed a high diversity of fungi colonizing roots. Fungal ability to germinate seeds of different orchids was determined in symbiotic germination tests; 24 fungal groups were isolated, belonging to the genera Tulasnella, Ceratobasidium, and Thanatephorus. Furthermore, dark septate and other endophytic fungi were identified. The high number of Rhizoctonia-like fungi obtained from adult orchids from the Coastal mountain range suggests that, after germination, these orchids may complement their nutritional demands through mycoheterotrophy. Nonetheless, beneficial associations with other endophytic fungi may also co-exist. In this study, isolated mycorrhizal fungi had the ability to induce seed germination at different efficiencies and with low specificity. Germin ation rates were low, but protocorms continued to develop for 60 days. A Tulasnella sp. isolated from Chloraea gavilu was most effective to induce seed germination of different species. The dark septate endophytic (DSE) fungi did not show any effect on seed development; however, their widespread occurrence in some orchids suggests a putative role in plant establishment.

Mycorrhizal symbiosis enhances Phalaenopsis orchid's growth and ...

African Journals Online (AJOL)

Phalaenopsis is the most important potted orchid genus in the world. However, the low seedling survival rate, long vegetative growth period and disease outbreak are problems in production. Orchid micorrhizal fungi (OMF) are their obligate partners in orchid physiology. Orchids use their symbionts to gain access to organic ...

Orchid Classification Disease Identification And Healthiness Prediction System

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K. W. V Sanjaya

2015-03-01

Full Text Available Abstract Floriculture has become one of Sri Lankas major foreign exchange ventures and it has grown substantially during the last few years. Currently we can find three major types of growers in floriculture. They are Large Commercial Ventures Middle Level growers and Village Level growers. Both Middle Level and Village level growers usually go for low cost cultivation with minimum advanced techniques sticking to conventional methods. Orchid cultivation is more pleasurable and profitable than any other floriculture ventures. As the orchid cultivation is so pleasurable we can introduce another group of growers who cultivate orchid in their home gardens for making their home gardens beautiful. But the problem is that most of these growers may not have the knowledge to identify the specie of the plants as there are a number of similar looking plants which are in different species. And also they may not have the knowledge about the orchid diseases. Because of that they may not be able to get the maximum outcome from their cultivations. So the aim of our project is to address the above mentioned issues by introducing a system which can identify orchid species amp diseases and predict the healthiness of the orchid plants. The only input to this system is an image of an orchid leaf and the system will provide the orchid specie name diseases if there any healthiness of the orchid plant and suggestions to overcome the issues associated with the orchid plant as the output. We identify the orchid species and diseases by extracting the features of orchid plant leaf in the input image using image processing technics and with the use of data mining technics we predict the healthiness of the orchid plant. So this system will be a great help for the people who love to grow orchids but dont have knowledge about the orchid species and diseases. And also they will be able to find the healthiness of their orchid plants.

Commercialization Of Orchid Mutants For Floriculture Industry

International Nuclear Information System (INIS)

Sakinah Ariffin; Zaiton Ahmad

2014-01-01

Orchids are the main contributors to cut flower industry in Malaysia with an existing good market and a huge business potential. Orchid industry has been established in Malaysia since 1960s but only started to develop and expand since 1980s. Continuous development of new orchid varieties is essential to meet customers' demands. Orchid mutagenesis research using gamma irradiation at Malaysian Nuclear Agency has successfully generated a number of new orchid varieties with commercial potentials. Therefore, Nuclear Malaysia has collaborated with an industrial partner, Hexagon Green Sdn Bhd (HGSB), to carry out commercialization research on these mutants under a Technofund project entitled 'Pre-Commercialization of Mutant Orchids for Cut Flowers Industry' from July 2011 to July 2014. Through this collaboration, Dendrobium orchid mutant plants developed by Nuclear Malaysia were transferred to HGSB's commercial orchid nursery at Bukit Changgang Agrotechnology Park, Banting, Selangor, for mass-propagation. The activities include evaluations on plant growth performance, flower quality, post harvest and market potential of these mutants. Mutants with good field performance have been identified and filed for Plant Variety Protection (PVP) with Department of Agriculture Malaysia. This paper describes outputs from this collaboration and activities undertaken in commercializing these mutants. (author)

In vitro propagation of Paphiopedilum orchids.

Science.gov (United States)

Zeng, Songjun; Huang, Weichang; Wu, Kunlin; Zhang, Jianxia; da Silva, Jaime A Teixeira; Duan, Jun

2016-01-01

Paphiopedilum is one of the most popular and rare orchid genera. Members of the genus are sold and exhibited as pot plants and cut flowers. Wild populations of Paphiopedilum are under the threat of extinction due to over-collection and loss of suitable habitats. A reduction in their commercial value through large-scale propagation in vitro is an option to reduce pressure from illegal collection, to attempt to meet commercial needs and to re-establish threatened species back into the wild. Although they are commercially propagated via asymbiotic seed germination, Paphiopedilum are considered to be difficult to propagate in vitro, especially by plant regeneration from tissue culture. This review aims to cover the most important aspects and to provide an up-to-date research progress on in vitro propagation of Paphiopedilum and to emphasize the importance of further improving tissue culture protocols for ex vitro-derived explants.

Production of virus-free orchid Cymbidium aloifolium (L.) Sw. by various tissue culture techniques.

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Pradhan, Shreeti; Regmi, Tripti; Ranjit, Mukunda; Pant, Bijaya

2016-10-01

Orchids are affected by many viruses resulting in poor growth, yield and quality, and an overall decline in population. Cymbidium mosaic virus (CymMV) is one of the common orchid viruses found in Cymbidium species but it infects different orchid genera. In this study Cymbidium aloifolium was propagated in vitro using MS medium at different strength (1.0, ½, and ¼) with or without 0.5 mg/l BAP (6-benzylaminopurine) and 0.5 mg/l NAA (Naphthalene acetic acid). To provide disease-free planting material, source plant for in vitro propagation needs to be screened for pathogenic viruses. In the present study, in vivo -grown source (mother) plants and tissue culture-derived plants of C. aloifolium were tested for CymMV virus using Double antibody sandwich enzyme linked immunosorbent assay (DAS-ELISA). All the tissue cultured plants were found to be 100% virus-free whereas the in vivo grown source plants were highly affected by CymMV virus (83.33%). The virus-free in vitro plantlets were multiplied in large scale and then acclimatized on earthen pot containing a mixture of cocopeat, litter and clay in the ratio of 3:2:1. Eighty five percent of acclimatized plantlets survived making this method an efficient mass production system for high quality virus-free C. aloifolium for commercial floriculture and germplasm preservation.

Production of virus-free orchid Cymbidium aloifolium (L. Sw. by various tissue culture techniques

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Shreeti Pradhan

2016-10-01

Full Text Available Orchids are affected by many viruses resulting in poor growth, yield and quality, and an overall decline in population. Cymbidium mosaic virus (CymMV is one of the common orchid viruses found in Cymbidium species but it infects different orchid genera. In this study Cymbidium aloifolium was propagated in vitro using MS medium at different strength (1.0, ½, and ¼ with or without 0.5 mg/l BAP (6-benzylaminopurine and 0.5 mg/l NAA (Naphthalene acetic acid. To provide disease-free planting material, source plant for in vitro propagation needs to be screened for pathogenic viruses. In the present study, in vivo-grown source (mother plants and tissue culture-derived plants of C. aloifolium were tested for CymMV virus using Double antibody sandwich enzyme linked immunosorbent assay (DAS-ELISA. All the tissue cultured plants were found to be 100% virus-free whereas the in vivo grown source plants were highly affected by CymMV virus (83.33%. The virus-free in vitro plantlets were multiplied in large scale and then acclimatized on earthen pot containing a mixture of cocopeat, litter and clay in the ratio of 3:2:1. Eighty five percent of acclimatized plantlets survived making this method an efficient mass production system for high quality virus-free C. aloifolium for commercial floriculture and germplasm preservation. Keywords: Biological sciences, Plant biology

Presence, distribution and effect of white, pink and purple morphs on pollination in the orchid Orchis mascula

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Bertrand Schatz

2013-12-01

Full Text Available How floral polymorphism of flowering plants can be maintained in evolutionary time has long intrigued ecologists and is still debated. In particular, how floral colour polymorphism influences reproductive success is still poorly understood. Here, we investigated the case of Orchis mascula, a deceptive orchid species in which the presence of rare white-flowered individuals is known to increase the percentage pollination of co-occurring coloured morphs. In a brief review, we report all the orchid species for which rare colour morphs are recorded and show that colour polymorphism occurs in most orchid genera occurring in France. In this study, more than 20,000 individuals of O. mascula were surveyed and some rare clear pink morphs were recorded. The frequencies of white-flowered and clear pink-flowered individuals were 0.59% and 0.28%, respectively. These two rare-colour flowered individuals were not randomly distributed and restricted to a few populations. In addition, the presence of pink-flowered individuals and the use of experimental pink lures resulted in an increase in the percentage pollination of surrounding purple-flowered individuals, as previously shown for white-flowered individuals and white lures. These new observations favour kin selection as the means by which floral colour polymorphism is maintained in this species. We suggest conducting comparative studies of other species in order to evaluate the importance of this mechanism in orchid pollination and that of other plant families.

First experimental evidence for carbon starvation at warm temperatures in epiphytic orchids of tropical cloud forests

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Hoch, Guenter; Roemer, Helena; Fioroni, Tiffany; Olmedo, Inayat; Kahmen, Ansgar

2017-04-01

Tropical cloud forests are among the most climate sensitive ecosystems world-wide. The lack of a strong seasonality and the additional dampening of temperature fluctuations by the omnipresence of clouds and fog produce year-round constant climatic conditions. With climate change the presence of clouds and fog is, however, predicted to be reduced. The disappearance of the cooling fog cover will have dramatic consequences for air temperatures, that are predicted to increase locally well over 5 °C by the end of the 21st century. Especially the large number of endemic epiphytic orchids in tropical cloud forests that contribute substantially to the biological diversity of these ecosystems, but are typically adapted to a very narrow climate envelope, are speculated to be very sensitive to the anticipated rise in temperature. In a phytotron experiment we investigated the effect of increasing temperatures on the carbon balance (gas-exchange and the carbon reserve household) of 10 epiphytic orchid species from the genera Dracula, native to tropical, South-American cloud forests. The orchids were exposed to three temperature treatments: i) a constant temperature treatment (23°C/13°C, day/night) simulating natural conditions, ii) a slow temperature ramp of +0.75 K every 10 days, and iii) a fast temperature ramp of +1.5 K every 10 days. CO2 leaf gas-exchanges was determined every 10 days, and concentrations of low molecular weight sugars and starch were analyses from leaf samples throughout the experiment. We found that increasing temperatures had only minor effects on day-time leaf respiration, but led to a moderate increase of respiration during night-time. In contrast to the rather minor effects of higher temperatures on respiration, there was a dramatic decline of net-photosynthesis above day-time temperatures of 29°C, and a complete stop of net-carbon uptake at 33°C in all investigated species. This high sensitivity of photosynthesis to warming was independent of the

Pollinator-Driven Speciation in Sexually Deceptive Orchids

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Shuqing Xu

2012-01-01

Full Text Available Pollinator-mediated selection has been suggested to play a major role for the origin and maintenance of the species diversity in orchids. Sexually deceptive orchids are one of the prime examples for rapid, pollinator-mediated plant radiations, with many species showing little genetic differentiation, lack of postzygotic barriers, but strong prezygotic reproductive isolation. These orchids mimic mating signals of female insects and employ male insects as pollinators. This kind of sexual mimicry leads to highly specialised pollination and provides a good system for investigating the process of pollinator-driven speciation. Here, we summarise the knowledge of key processes of speciation in this group of orchids and conduct a meta-analysis on traits that contribute to species differentiation, and thus potentially to speciation. Our study suggests that pollinator shift through changes in floral scent is predominant among closely related species in sexually deceptive orchids. Such shifts can provide a mechanism for pollinator-driven speciation in plants, if the resulting floral isolation is strong. Furthermore, changes in floral scent in these orchids are likely controlled by few genes. Together these factors suggest speciation in sexually deceptive orchids may happen rapidly and even in sympatry, which may explain the remarkable species diversity observed in this plant group.

Fusarium species as pathogen on orchids.

Science.gov (United States)

Srivastava, Shikha; Kadooka, Chris; Uchida, Janice Y

2018-03-01

The recent surge in demand for exotic ornamental crops such as orchids has led to a rise in international production, and a sharp increase in the number of plant and plant products moving between countries. Along with the plants, diseases are also being transported and introduced into new areas. Fusarium is one of the major diseases causing pathogens infecting orchids that is spreading through international trade. Studies have identified several species of Fusarium associated with orchids, some are pathogenic and cause symptoms such as leaf and flower spots, leaf or sheath blights, pseudostem or root rots, and wilts. Infection and damage caused by Fusarium reduces the quality of plants and flowers, and can cause severe economic losses. This review documents the current status of the Fusarium-orchid interaction, and illustrates challenges and future perspectives based on the available literature. This review is the first of Fusarium and orchid interactions, and integrates diverse results that both furthers the understanding and knowledge of this disease complex, and will enable the development of effective disease management practices. Copyright © 2017 Elsevier GmbH. All rights reserved.

Endangered edible orchids and vulnerable gatherers in the context of HIV/AIDS in the Southern Highlands of Tanzania

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Price Lisa

2009-12-01

Full Text Available Abstract Background Tanzania is a wild orchid biodiversity hotspot and has a high prevalence of HIV/AIDS. The wild orchids in the study are endemic and protected by the Convention on International Trade in Endangered Species. Every year, however, between 2.2 and 4.1 million orchid plants consumed in Zambia are estimated as originating from Tanzania. This research examines the differences between HIV/AIDS wild edible orchid gatherers and non-HIV/AIDS gatherers with regards to the frequency of gathering, salience in naming the various orchids, gathering knowledge acquisition and perceptions regarding the current state of abundance of the edible species. Methods Data was collected through interviews with 224 individuals in the Makete District of Tanzania close to the boarder of Zambia. Free-listings were conducted and Sutrup's Cultural Significance Index (CSI constructed. The independent t-test was used to compare the differences in gathering frequencies between affected and non-affected gatherers. A multiple comparison of the 4 subgroups (affected adults and children, and non-affected adults and children in gathering frequencies was done with a one way ANOVA test and its post hoc test. To examine the difference between affected and non-affected gatherers difference in source of gathering knowledge, a chi square test was run. Results Forty two vernacular names of gathered orchid species were mentioned corresponding to 7 botanical species belongs to genera Disa, Satyrium, Habenaria, Eulophia and Roeperocharis. Ninety-seven percent of HIV/AIDS affected households state that orchid gathering is their primary economic activity compared to non-HIV/AIDS affected households at 9.7 percent. The HIV/AIDS affected gathered significantly more often than the non-affected. AIDS orphans, however, gathered most frequently. Gatherers perceive a decreasing trend of abundance of 6 of the 7 species. Gathering activities were mainly performed in age based peer groups

The folklore medicinal orchids of Sikkim

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Ashok Kumar Panda

2013-01-01

Results and Conclusion: We found that 36 species of orchids are used as medicines for different purposes of health. The botanical and ayurvedic name, phenology, parts used and medicinal uses of 36 orchids are presented in this paper along with its local distribution.

A Study of the Epiphytic Orchids in Jobolarangan Forest

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ADIANI VIVIATI

2001-07-01

Full Text Available The objective of the research was to know the species of epiphytic orchids in Jobolarangan forest. The orchid samples were taken from all stand-plants. The plants were chosen randomly by considering the diversity and richness of orchids that attach on it. Each plant was sampled in three repetitions. Sampling of orchids existence in the plant’s stand were done using transect method through a zonation system. In this research 11 epiphytic-orchids such as Bulbophyllum bakhuizenii Stenn, Coelogyne miniata Lindl, Coelogyne rochussenii de Vr., Dendrobium bigibbum Lindl., Dendrobchilum longifolium, Eria bogoriensis, J.J.S. Liparis caespitosa (Thou. Lindl., Liparis pallida (Bl.. Pholidota globosa (Bl. Lindl., Polystachya flavescens (Bl. J.J.S., and Trichoglottis sp. were found. The host plant stand that was attached with most orchids was Schefflera fastigiata and Saurauia bracteosa, generally in zone three.

Frozen beauty: The cryobiotechnology of orchid diversity.

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Popova, Elena; Kim, Haeng Hoon; Saxena, Praveen Kumar; Engelmann, Florent; Pritchard, Hugh W

2016-01-01

Orchids (Orchidaceae) are one of the most diverse plant groups on the planet with over 25,000 species. For over a century, scientists and horticulturalists have been fascinated by their complex floral morphology, pollinator specificity and multiple ethnobotanical uses, including as food, flavourings, medicines, ornaments, and perfumes. These important traits have stimulated world-wide collection of orchid species, often for the commercial production of hybrids and leading to frequent overexploitation. Increasing human activities and global environmental changes are also accelerating the threat of orchid extinction in their natural habitats. In order to improve gene conservation strategies for these unique species, innovative developments of cryopreservation methodologies are urgently needed based on an appreciation of low temperature (cryo) stress tolerance, the stimulation of recovery growth of plant tissues in vitro and on the 'omics' characterization of the targeted cell system (biotechnology). The successful development and application of such cryobiotechnology now extends to nearly 100 species and commercial hybrids of orchids, underpinning future breeding and species conservation programmes. In this contribution, we provide an overview of the progress in cryobanking of a range of orchid tissues, including seeds, pollen, protocorms, protocorm-like bodies, apices excised from in vitro plants, cell suspensions, rhizomes and orchid fungal symbionts. We also highlight future research needs. Copyright © 2016. Published by Elsevier Inc.

Metagenomic Analyses of the Viruses Detected in Mycorrhizal Fungi and Their Host Orchid.

Science.gov (United States)

Shimura, Hanako; Masuta, Chikara; Koda, Yasunori

2018-01-01

In nature, mycorrhizal association with soilborne fungi is indispensable for orchid families. Fungal structures from compatible endo-mycorrhizal fungi in orchid cells are digested in cells to be supplied to orchids as nutrition. Because orchid seeds lack the reserves for germination, they keep receiving nutrition through mycorrhizal formation from seed germination until shoots develop (leaves) and become photoautotrophic. Seeds of all orchid species surely geminate with the help of their own fungal partners, and this specific partnership has been acquired for a long evolutional history between orchids and fungi.We have studied the interactions between orchids and mycorrhizal fungi and recently conducted transcriptome analyses (RNAseq) by a next-generation sequencing (NGS) approach. It is possible that orchid RNA isolated form naturally grown plants is contaminated with RNAs derived from mycorrhizal fungi in the orchid cells. To avoid such contamination, we here prepared aseptically germinated orchid plants (i.e., fungus-free plants) together with a pure-cultured fungal isolate and field-growing orchid samples. In the cDNA library prepared from orchid and fungal tissues, we found that partitivirus-like sequences were common in an orchid and its mycorrhizal fungus. These partitivirus-like sequences were closely related by a phylogenetic analysis, suggesting that transmission of an ancestor virus between the two organisms occurred through the specific relation of the orchid and its associated fungus.

Sample preparation method for induced mutation on orchid

International Nuclear Information System (INIS)

Suhaimi Musa; Sakinah Ariffin

2005-01-01

Studies on the induction of mutation in Dendrobium orchid at MINT has produced a number of new orchid mutant cultivars. Tissue culture techniques on orchid seeds and meristem cloning are employed in preparing the samples for the mutation induction. Solid medium based on the Murashige and Skoog (1962) and liquid medium based on Vacin and Went (1949) were found to be suitable in producing protocorm like bodies (PLBs) that are required for the irradiation treatment. (Author)

Deceived by orchids: sex, science, fiction and Darwin.

Science.gov (United States)

Endersby, Jim

2016-06-01

Between 1916 and 1927, botanists in several countries independently resolved three problems that had mystified earlier naturalists - including Charles Darwin: how did the many species of orchid that did not produce nectar persuade insects to pollinate them? Why did some orchid flowers seem to mimic insects? And why should a native British orchid suffer 'attacks' from a bee? Half a century after Darwin's death, these three mysteries were shown to be aspects of a phenomenon now known as pseudocopulation, whereby male insects are deceived into attempting to mate with the orchid's flowers, which mimic female insects; the males then carry the flower's pollen with them when they move on to try the next deceptive orchid. Early twentieth-century botanists were able to see what their predecessors had not because orchids (along with other plants) had undergone an imaginative re-creation: Darwin's science was appropriated by popular interpreters of science, including the novelist Grant Allen; then H.G. Wells imagined orchids as killers (inspiring a number of imitators), to produce a genre of orchid stories that reflected significant cultural shifts, not least in the presentation of female sexuality. It was only after these changes that scientists were able to see plants as equipped with agency, actively able to pursue their own, cunning reproductive strategies - and to outwit animals in the process. This paper traces the movement of a set of ideas that were created in a context that was recognizably scientific; they then became popular non-fiction, then popular fiction, and then inspired a new science, which in turn inspired a new generation of fiction writers. Long after clear barriers between elite and popular science had supposedly been established in the early twentieth century, they remained porous because a variety of imaginative writers kept destabilizing them. The fluidity of the boundaries between makers, interpreters and publics of scientific knowledge was a highly

Rare wild Orchids at CERN Meyrin

CERN Multimedia

2005-01-01

There are several "Floral Nature Reserve - Late Mowing" zones at CERN Meyrin. The blossoms of a rare and a not so rare type of wild orchid are currently in flower. The rare one is the bee orchid (Ophrys Apifera) which is a protected perennial. They are very unusual and in some years can appear in great numbers and then sometimes only reappear after a decade. They live in a symbiotic relationship with a soil-dwelling fungus. Its name stems from the fact that its brown, furry lip resembles and smells like a female bee, a mimicry used to attract drones to aid in pollination. The much more distributed species is the pyramidal orchid (Anacamptis Pyramidalis), which due to its size and its bright pink colour is already visible when you pass by in your car.

Induced mutation of Dendrobium orchid

International Nuclear Information System (INIS)

Sakinah Ariffin; Mohd Nazir Basiran

2000-01-01

Dendrobiiim orchids serve as the main orchid cut flower export of Malaysia. The wide range of colour and forms presently available in the market are obtained through hybridisation. Induced mutation breeding program was initiated on a commercial variety Dendrobium 'Sonia Kai' to explore the possibilities of obtaining new colour and forms. Matured seeds from self pollination were cultured and irradiated at 35 Gy at the protocorm-like bodies (PLBS) stage. Selection of induced mutations was done after the first flowering of the plants regenerated from the irradiated protocorms. Results showed changes in flower colour, shape and size. Most of these chances are expressed in different combinations in the petals, sepals and lip of the flowers. Thus, resulting. in a very wide spectrum of mutations. Some of these chances are not stable. To date, mutants that showed stable characteristics changes are grouped into 11 categories based on flower colour and form. These results show that the combination of its vitro technique and induced mutation can be applied in orchid breeding to produce new interesting and attractive variety for the market

Germination and seedling establishment in orchids: a complex of requirements.

Science.gov (United States)

Rasmussen, Hanne N; Dixon, Kingsley W; Jersáková, Jana; Těšitelová, Tamara

2015-09-01

Seedling recruitment is essential to the sustainability of any plant population. Due to the minute nature of seeds and early-stage seedlings, orchid germination in situ was for a long time practically impossible to observe, creating an obstacle towards understanding seedling site requirements and fluctuations in orchid populations. The introduction of seed packet techniques for sowing and retrieval in natural sites has brought with it important insights, but many aspects of orchid seed and germination biology remain largely unexplored. The germination niche for orchids is extremely complex, because it is defined by requirements not only for seed lodging and germination, but also for presence of a fungal host and its substrate. A mycobiont that the seedling can parasitize is considered an essential element, and a great diversity of Basidiomycota and Ascomycota have now been identified for their role in orchid seed germination, with fungi identifiable as imperfect Rhizoctonia species predominating. Specificity patterns vary from orchid species employing a single fungal lineage to species associating individually with a limited selection of distantly related fungi. A suitable organic carbon source for the mycobiont constitutes another key requirement. Orchid germination also relies on factors that generally influence the success of plant seeds, both abiotic, such as light/shade, moisture, substrate chemistry and texture, and biotic, such as competitors and antagonists. Complexity is furthermore increased when these factors influence seeds/seedling, fungi and fungal substrate differentially. A better understanding of germination and seedling establishment is needed for conservation of orchid populations. Due to the obligate association with a mycobiont, the germination niches in orchid species are extremely complex and varied. Microsites suitable for germination can be small and transient, and direct observation is difficult. An experimental approach using several

Orchid phylogenomics and multiple drivers of their extraordinary diversification

Science.gov (United States)

Givnish, Thomas J.; Spalink, Daniel; Ames, Mercedes; Lyon, Stephanie P.; Hunter, Steven J.; Zuluaga, Alejandro; Iles, William J. D.; Clements, Mark A.; Arroyo, Mary T. K.; Leebens-Mack, James; Endara, Lorena; Kriebel, Ricardo; Neubig, Kurt M.; Whitten, W. Mark; Williams, Norris H.; Cameron, Kenneth M.

2015-01-01

Orchids are the most diverse family of angiosperms, with over 25 000 species, more than mammals, birds and reptiles combined. Tests of hypotheses to account for such diversity have been stymied by the lack of a fully resolved broad-scale phylogeny. Here, we provide such a phylogeny, based on 75 chloroplast genes for 39 species representing all orchid subfamilies and 16 of 17 tribes, time-calibrated against 17 angiosperm fossils. A supermatrix analysis places an additional 144 species based on three plastid genes. Orchids appear to have arisen roughly 112 million years ago (Mya); the subfamilies Orchidoideae and Epidendroideae diverged from each other at the end of the Cretaceous; and the eight tribes and three previously unplaced subtribes of the upper epidendroids diverged rapidly from each other between 37.9 and 30.8 Mya. Orchids appear to have undergone one significant acceleration of net species diversification in the orchidoids, and two accelerations and one deceleration in the upper epidendroids. Consistent with theory, such accelerations were correlated with the evolution of pollinia, the epiphytic habit, CAM photosynthesis, tropical distribution (especially in extensive cordilleras), and pollination via Lepidoptera or euglossine bees. Deceit pollination appears to have elevated the number of orchid species by one-half but not via acceleration of the rate of net diversification. The highest rate of net species diversification within the orchids (0.382 sp sp−1 My−1) is 6.8 times that at the Asparagales crown. PMID:26311671

Rare wild Orchids at CERN Meyrin

CERN Document Server

2005-01-01

There are several "Floral Nature Reserve - Late Mowing" zones at CERN Meyrin. The blossoms of a rare and a not so rare type of wild orchid are currently in flower. The rare one is the bee orchid (Ophrys Apifera) which is a protected perennial. They are very unusual and in some years can appear in great numbers and then sometimes only reappear after a decade. They live in a symbiotic relationship with a soil-dwelling fungus. Its name stems from the fact that its brown, furry lip resembles and smells like a female bee, a mimicry used to attract drones to aid in pollination. The much more distributed species is the pyramidal orchid (Anacamptis Pyramidalis), which due to its size and its bright pink colour is already visible when you pass by in your car. Photos were taken on the late mowing zone adjacent to route Einstein opposite building 57 on 4 June 2005.

Ultrastructure study of Vanda Kasem's Delight orchid's protocorm-like body

OpenAIRE

Gnasekaran,Pavallekoodi; Mahmood,Maziah; Subramaniam,Sreeramanan

2016-01-01

ABSTRACT Growing orchids has been classified as an international business since it covers 8% of the world floriculture trade. Thus, large-scale micropropagation of orchid using tissue culture techniques and improvement of some essential traits, such as resistances to various diseases and pests, and tolerances to environmental stresses, such as low temperatures and low light intensities, via genetic engineering acknowledged the orchids as one of the top ten cut flowers. Protocorm-like bodies (...

Les orchidées comestibles chez le peuple Bagam, au Cameroun

Directory of Open Access Journals (Sweden)

Menzepoh, SB.

2011-01-01

Full Text Available Edible orchids by the Bagam tribe in Cameroon. In the Zambezian region of Africa, tuber orchids are renowned for their food, medicinal and economic values. In central Africa and in Cameroon in particular, socio-economic role of orchids is still to be documented. The current paper focuses on two orchids, Habenaria keayi Summerh. and Habenaria zambesina Rchb.f. which tuber and roots respectively are used to prepare a food called "napssié" or ground meat by the Bagam tribe in the subdivision of Galim, Western region of Cameroon. The paper also mentions their socio-economic role, threat and pleads for their domestication.

In Vitro Propagation Of Nepalese Orchids: A Review

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Silva Jaime A. Teixeira da

2014-12-01

Full Text Available Nepalese orchids are made up of 458 taxa. Despite a ban on the collection and trade of all orchid species in Nepal, numerous anthropogenic factors are leading to the rapid loss of natural stands of germplasm. Biotechnology, specifically in vitro propagation, may be the only viable solution for preserving and reintroducing endangered germplasm back into the wild. Despite the large germplasm base, only tissue culture studies have been conducted, and most have focused almost exclusively on in vitro seed germination, the bulk of which have been conducted in the past few years. No other biotechnological advances have yet been made. This brief review provides a short synopsis of the advances made thus far in the in vitro propagation of Nepalese orchids.

Preliminary Survey on Native Orchids of Hkakabo-razi National Park

International Nuclear Information System (INIS)

Saw Lwin

2005-10-01

Hkakabo-razi is rich in biodiversity of flora and fauna which is situated in Northern Kachin State. Total area of Hkakabo-razi is 1472 sq miles and is the biggest National Park in Myanmar. Abundance of wild orchids, rhododendrons, ferns, trees, temperate and sub-tropical wild flowers grow well naturally in primary dense forests of this area. This area is habitat of CITES Appendis (I) listed orchid Paphiopedilum wardii and other uncommon and unusual native wild orchids. Three biological expeditions in 1997, 1998 and 2000 undertook the task of surveying the flora and fauna of this region jointlyh co-sponsored by Forest Department of Myanmar and Wildlife Conservation Society from United States. In this presentation, the native orchids of this area were described and presented as the preliminary result of above three biological expeditions conducted in Hkakabo-razi National Park.

A Protoplast Transient Expression System to Enable Molecular, Cellular, and Functional Studies in Phalaenopsis orchids

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Hsiang-Yin Lin

2018-06-01

Full Text Available The enigmatic nature of the specialized developmental programs of orchids has fascinated plant biologists for centuries. The recent releases of orchid genomes indicate that orchids possess new gene families and family expansions and contractions to regulate a diverse suite of developmental processes. However, the extremely long orchid life cycle and lack of molecular toolkit have hampered the advancement of orchid biology research. To overcome the technical difficulties and establish a platform for rapid gene regulation studies, in this study, we developed an efficient protoplast isolation and transient expression system for Phalaenopsis aphrodite. This protocol was successfully applied to protein subcellular localization and protein–protein interaction studies. Moreover, it was confirmed to be useful in delineating the PaE2F/PaDP-dependent cell cycle pathway and studying auxin response. In summary, the established orchid protoplast transient expression system provides a means to functionally characterize orchid genes at the molecular level allowing assessment of transcriptome responses to transgene expression and widening the scope of molecular studies in orchids.

Mutation Breeding of Dendrobium Orchids For Insect Resistance

International Nuclear Information System (INIS)

Zaiton Ahmad; Sakinah Ariffin; Ros Anita Ahmad Ramli; Mohd Nazir Basiran; Affrida Abu Hassan

2010-01-01

This project was a collaborative FNCA project involving Malaysia, Thailand, Indonesia and Japan. The objective was to jointly produce new orchid mutants that resistant/tolerant to insect infestation. It focused on commercial hybrids or species of Dendrobium orchids; namely Dendrobium Sonia 17 Red from Thailand, Dendrobium jayakarta from Indonesia and Dendrobium mirbellianum from Malaysia. In this project, tissue culture orchid materials (proto corm-like-bodies or PLBs) were exchanged among the participated countries early in the project. The Malaysian research team had irradiated these PLBs with two ionizing mutagens; gamma rays and ion beams (JAEA). Following irradiation, regenerated plant lets were randomly selected from each dose and subjected to in vitro infestation with mites and thrips, to analyse their resistance towards these pests. The main aim of in vitro infestation was to pre-select potential mutants for secondary screening at flowering stage. Potential insect resistant orchid mutants were then selected and subsequently planted in the glass house. Secondary screenings were carried out at flowering stage by challenge-infestation with the target insects. This project, which was completed in December 2009, has successfully generated two D. jayakarta mutants tolerant to thrips, and one D. mirbellianum tolerant to both mite and thrips. (author)

Molecular techniques as complementary tools in orchid mutagenesis

Energy Technology Data Exchange (ETDEWEB)

Mohd Nazir Basiran; Sakinah Ariffin [Malaysian Institute for Nuclear Technology Research (MINT), Bangi (Malaysia)

2002-02-01

Orchid breeders have always been dependent on hybridization technology to produce new orchid hybrids and varieties. The technology has proven very reliable and easy to use and has produced wide range of successful cultivars with attractive combinations of spray length, bud number, flower colour and form, vase life, fragrance, seasonality, and compactness. By introducing mutagenesis however, wide variations of flower colours, form and size can still be obtained in addition to overcoming the problem of sexual incompatibility and sterility. In addition, complementary use of molecular techniques will allow breeders to target more specific characteristic changes and cut short breeding time. PCR-based techniques used to analyse the DNA of mutagenic clones found polymorphic fragments that can be developed as molecular markers. This paper describes how mutagenesis and molecular techniques can be used to enhance orchid breeding efforts. (author)

Standard Operating Procedure (SOP) on Planting and Maintenance of Orchid at Malaysian Nuclear Agency

International Nuclear Information System (INIS)

Othman Abu Sari; Suhaimi Musa; Affrida Abu Hassan

2015-01-01

Research on orchid mutation breeding has been carried out at Malaysian Nuclear Agency since 1990s. In this study, a large number of irradiated orchid seedlings were planted for screening and the mutants obtained were propagated from time to time. Care should be taken to make sure plants are healthy, hence resulted in reliable and accurate data. For this purpose, SOP for orchid cultivation and maintenance need to be developed. A short attachment on training was carried at Hexagon Green Sdn. Bhd orchid farm, Bukit Changgang, Banting. Besides learning the cultivation, maintenance and management of orchids, consequently the experience obtained from this attachment helped in preparing SOP at Malaysian Nuclear Agency. This paper will discuss the SOP on cultivation and maintenance of orchid from the hardening until maturation stage in the glass house to ensure plants are healthy, produce of high quality flowers and disease free. (author)

New Workflows for Born-Digital Assets: Managing Charles E. Bracker's Orchid Photographs Collection

Science.gov (United States)

Hurford, Amanda A.; Runyon, Carolyn F.

2011-01-01

Charles E. Bracker was a professor of botany and plant pathology at Purdue University from 1964 to 1999. His late wife, Anri, was an orchid enthusiast who began collecting and housing orchids in the 1980s. In 2009, Bracker's 30,000 digital orchid photographs were donated to Ball State University Libraries, where both of this article's authors…

DOAP1 Promotes Flowering in the Orchid Dendrobium Chao Praya Smile.

Science.gov (United States)

Sawettalake, Nunchanoke; Bunnag, Sumontip; Wang, Yanwen; Shen, Lisha; Yu, Hao

2017-01-01

APETALA1 ( AP1 ) encodes a key MADS-box transcription factor that specifies the floral meristem identity on the flank of the inflorescence meristem, and determines the identity of perianth floral organs in the model plant Arabidopsis thaliana . Orchids are members of the Orchidaceae, one of the largest families of angiosperms. Although the expression patterns of a few AP1 -like genes in orchids have been reported, their actual functions in orchid reproductive development are so far largely unknown. In this study, we isolated and characterized an AP1 ortholog, DOAP1 , from Dendrobium Chao Praya Smile. DOAP1 was highly expressed in reproductive tissues, including inflorescence apices and flowers at various developmental stages. Overexpression of DOAP1 resulted in early flowering in Arabidopsis , and was able to rescue the floral organ defects of Arabidopsis ap1 mutants. Moreover, we successfully created transgenic Dendrobium Chao Praya Smile orchids overexpressing DOAP1 , which displayed earlier flowering and earlier termination of inflorescence meristems into floral meristems than wild-type orchids. Our results demonstrate that DOAP1 plays an evolutionarily conserved role in promoting flowering and floral meristem specification in the Orchidaceae family.

Perspectives on MADS-box expression during orchid flower evolution and development.

Science.gov (United States)

Mondragón-Palomino, Mariana

2013-01-01

The diverse morphology of orchid flowers and their complex, often deceptive strategies to become pollinated have fascinated researchers for a long time. However, it was not until the 20th century that the ontogeny of orchid flowers, the genetic basis of their morphology and the complex phylogeny of Orchidaceae were investigated. In parallel, the improvement of techniques for in vitro seed germination and tissue culture, together with studies on biochemistry, physiology, and cytology supported the progress of what is now a highly productive industry of orchid breeding and propagation. In the present century both basic research in orchid flower evo-devo and the interest for generating novel horticultural varieties have driven the characterization of many members of the MADS-box family encoding key regulators of flower development. This perspective summarizes the picture emerging from these studies and discusses the advantages and limitations of the comparative strategy employed so far. I address the growing role of natural and horticultural mutants in these studies and the emergence of several model species in orchid evo-devo and genomics. In this context, I make a plea for an increasingly integrative approach.

Perspectives on MADS-box expression during orchid flower evolution and development

Directory of Open Access Journals (Sweden)

Mariana eMondragón Palomino

2013-09-01

Full Text Available The diverse morphology of orchid flowers and their complex, often deceptive strategies to become pollinated have fascinated researchers for a long time. However, it was not until the 20th century that the ontogeny of orchid flowers, the genetic basis of their morphology and the complex phylogeny of Orchidaceae were investigated. In parallel, the improvement of techniques for in vitro seed germination and tissue culture, together with studies on biochemistry, physiology and cytology supported the progress of what is now a highly productive industry of orchid breeding and propagation. In the present century both basic research in orchid flower evo-devo and the interest for generating novel horticultural varieties have driven the characterization of many members of the MADS-box family encoding key regulators of flower development. This perspective summarizes the picture emerging from these studies and discusses the advantages and limitations of the comparative strategy employed so far. I address the growing role of natural and horticultural mutants in these studies and the emergence of several model species in orchid evo-devo and genomics. In this context, I make a plea for an increasingly integrative approach.

DOAP1 Promotes Flowering in the Orchid Dendrobium Chao Praya Smile

Science.gov (United States)

Sawettalake, Nunchanoke; Bunnag, Sumontip; Wang, Yanwen; Shen, Lisha; Yu, Hao

2017-01-01

APETALA1 (AP1) encodes a key MADS-box transcription factor that specifies the floral meristem identity on the flank of the inflorescence meristem, and determines the identity of perianth floral organs in the model plant Arabidopsis thaliana. Orchids are members of the Orchidaceae, one of the largest families of angiosperms. Although the expression patterns of a few AP1-like genes in orchids have been reported, their actual functions in orchid reproductive development are so far largely unknown. In this study, we isolated and characterized an AP1 ortholog, DOAP1, from Dendrobium Chao Praya Smile. DOAP1 was highly expressed in reproductive tissues, including inflorescence apices and flowers at various developmental stages. Overexpression of DOAP1 resulted in early flowering in Arabidopsis, and was able to rescue the floral organ defects of Arabidopsis ap1 mutants. Moreover, we successfully created transgenic Dendrobium Chao Praya Smile orchids overexpressing DOAP1, which displayed earlier flowering and earlier termination of inflorescence meristems into floral meristems than wild-type orchids. Our results demonstrate that DOAP1 plays an evolutionarily conserved role in promoting flowering and floral meristem specification in the Orchidaceae family. PMID:28386268

Ceratobasidium como hongo micorrízico de orquídeas en Colombia Ceratobasidium as orchid mycorrhizal fungi in Colombia

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Ana T. Mosquera-Espinosa

2010-07-01

Full Text Available Las orquídeas se caracterizan por su relación micorrízica obligada para la germinación de las semillas. El micosimbionte es principalmente del género-forma Rhizoctonia, al igual que sus teleomorfos de los géneros Ceratobasidium, Tulasnella, Thanatephorus y Sebacina. En Colombia hasta la fecha son muy pocos los reportes sobre hongos micorrízicos de orquídeas. Para el presente estudio se planteó el aislamiento e identificación de hongos micorrízicos de algunas orquídeas de diferentes há bitats en Colombia, siguiendo la metodología de contaje de núcleos en células de hifas jóvenes y la secuenciación de la región ITS de los genes ribosomales nucleares. Se identificaron doce aislamientos provenientes de ocho plantas de especies diferentes de orquídeas. Tanto búsquedas BLAST del GenBank como el número de núcleos los agruparon en el género Ceratobasidium. Los resultados sugieren que este género se asocia con una amplia diversidad de orquídeas de há bitats variados en Colombia, además que para esta planta puede ser un importante hongo micorrízico. Sin embargo, surgen preguntas relacionadas con la patogenicidad de los Ceratobasidium micorrízicos sobre otros hospederos y su posible potencial biocontrolador de hongos patógenos en plantas cultivadas como arroz.Orchids require a mycorrhizal relationship for seed germination. Many mycorrhizal fungi are in the form-genus Rhizoctonia, with teleomorphs in the genera Ceratobasidium, Tulasnella, Thanatephorus and Sebacina. So far there are very few reports of orchid mycorrhizal fungi in Colombia. The objectives of the present study were to isolate mycorrhizal fungi of orchids from different habitats in Colombia, and identify them by counting nuclei in young hyphae and sequencing the ITS region of nuclear ribosomal genes. We identified 12 isolates from 8 plants of different species of orchids. BLAST searches in GenBank and binucleate cellsplaced all isolates in the genus

New issues in orchid conservation

Czech Academy of Sciences Publication Activity Database

Kindlmann, Pavel

2011-01-01

Roč. 1, č. 2 (2011), s. 5 ISSN 1805-0174 Institutional research plan: CEZ:AV0Z60870520 Keywords : orchid conservation Subject RIV: EH - Ecology, Behaviour http://www.ejes.cz/index.php/ejes/article/view/46

Fine-scale spatial distribution of orchid mycorrhizal fungi in the soil of host-rich grasslands.

Science.gov (United States)

Voyron, Samuele; Ercole, Enrico; Ghignone, Stefano; Perotto, Silvia; Girlanda, Mariangela

2017-02-01

Mycorrhizal fungi are essential for the survival of orchid seedlings under natural conditions. The distribution of these fungi in soil can constrain the establishment and resulting spatial arrangement of orchids at the local scale, but the actual extent of occurrence and spatial patterns of orchid mycorrhizal (OrM) fungi in soil remain largely unknown. We addressed the fine-scale spatial distribution of OrM fungi in two orchid-rich Mediterranean grasslands by means of high-throughput sequencing of fungal ITS2 amplicons, obtained from soil samples collected either directly beneath or at a distance from adult Anacamptis morio and Ophrys sphegodes plants. Like ectomycorrhizal and arbuscular mycobionts, OrM fungi (tulasnelloid, ceratobasidioid, sebacinoid and pezizoid fungi) exhibited significant horizontal spatial autocorrelation in soil. However, OrM fungal read numbers did not correlate with distance from adult orchid plants, and several of these fungi were extremely sporadic or undetected even in the soil samples containing the orchid roots. Orchid mycorrhizal 'rhizoctonias' are commonly regarded as unspecialized saprotrophs. The sporadic occurrence of mycobionts of grassland orchids in host-rich stands questions the view of these mycorrhizal fungi as capable of sustained growth in soil. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

European orchid cultivation – from seed to mature plant

Directory of Open Access Journals (Sweden)

Jan Ponert

2012-02-01

Full Text Available We describe a method for growing orchids of the genera Dactylorhiza and Ophrys, two European members of the subfamily Orchidoideae, from seeds to mature plants using asymbiotic in vitro cultures and glasshouse pot cultures. Four media were used: two new media 1/4–2 and Mo2 and two modifications of Michl medium (Michl 1988. We also describe a highly efficient technique for seed disinfection using a syringe. We tested the effects of ethanol treatment on Anacmaptis morio (L R. M. Bateman, Pridgeon & M. W. seeds, sugar media composition on Dactylorhiza majalis (Rchb. P. F. Hunt & Summerh., Oeceoclades decaryana (H. Perrier ex Guillaumin & Manguin Garay & Taylor and Ophrys lojaconoi P. Delforge and the effect of kinetin on Dactylorhiza majalis protocorm growth. Sucrose was the best carbon source, while hexose resulted in the inhibition of protocorm development at early stages. The addition of kinetin at 10 mg/l resulted in the formation of the largest protocorms. Ethanol can have positive effect on seed germination when applied for a short time (2 min, while long-time ethanol exposure (60 min can kill the seeds.

Oeceoclades maculata, an alien tropical orchid in a Caribbean rainforest.

Science.gov (United States)

Cohen, Ian M; Ackerman, James D

2009-08-01

Undisturbed forest habitat can be relatively impenetrable to invasive, non-native species. Orchids are not commonly regarded as invasive, but some species have become invasive and these generally depend on habitat disturbance. One of the most aggressive orchids is Oeceoclades maculata, a terrestrial species with remarkable ecological amplitude. Originally from tropical Africa, it is now widespread in the neotropics. By associating its local distribution with land-use history and habitat characteristics, it was determined whether O. maculata is dependent on habitat disturbance. It was also investigated whether this exotic orchid occupies the same habitat space as two sympatric native species. Six 10 m x 500 m transects were censused in June 2007 on the 16-ha Luquillo Forest Dynamics Plot, located in the Luquillo Mountains, Puerto Rico. The plot had been mapped for historical land use, topography and soil type. Oeceoclades maculata was the most abundant of three orchid species surveyed and was found in all four historical cover classes. In cover class 3 (50-80 % forest cover in 1936), 192 of 343 plants were found at a density of 0.48 plants per 5 x 5 m subplot. Over 93 % of the 1200 subplots surveyed were composed of Zarzal or Cristal soil types, and O. maculata was nearly evenly distributed in both. The orchid was most common on relatively flat terrain. The distribution and abundance of two sympatric orchid species were negatively associated with that of the invasive species. Oeceoclades maculata does penetrate 'old growth' forest but is most abundant in areas with moderate levels of past disturbance. Soil type makes little difference, but slope of terrain can be important. The negative association between O. maculata and native species may reflect differences in habitat requirements or a negative interaction perhaps at the mycorrhizal level.

Seasonality and mycorrhizal colonization in three species of epiphytic orchids in southeast Mexico

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Vincenzo Bertolini

2014-12-01

Full Text Available Orchids establish symbiosis with Rhizoctonia mycorrhizal fungi, forming the characteristic pelotons within the cells of the root cortex. Under natural conditions, terrestrial and epiphytic orchids have different levels of dependence upon the fungal symbiont, although various authors have mentioned that once orchid plants reach maturity the interaction becomes weaker and intermittent. Recent evidence shows that in some epiphytic orchid species mycorrhization is constant and systematic. In three species of wild orchids from southeast Mexico, we show that mycorrhization is systematically present in roots of different ages, in the wet and dry seasons. We demonstrate that the volume of the root that is colonized depends upon the quantity of rainfall and the diameter of the root, and that rainfall also determines the presence of fresh, undigested pelotons. In very thin roots, mycorrhizal colonization occupies a considerable proportion of the cortex, whereas in thicker roots the proportion of the volume of the root cortex colonized is lower.

Pollination of euglossinophylic epiphytic orchids in agroecosystems and forest fragments in southeast Mexico

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Anne Damon

2012-09-01

Full Text Available To determine the reproductive status of the native orchids of the biodiversity “hotspot”, Biological Corridor Tacaná-Boquerón, in the region of Soconusco, southeast Mexico, which are suffering the effects of habitat degradation, unsustainable exploitation and potentially, climate change, we analysed the species richness, abundance, habitat and abiotic preferences, pollinaria transport and relation to orchid populations, of male Euglossine bees (Hymenoptera: Apidea: Euglossini in agroecosystems and forest fragments within the region. Using volatile baits we trapped 2,480 bees, consisting of 14 species, during a total of 256 hours, of which 284 individuals (11.5% had pollinaria of 18 orchid species adhered to their bodies. Three species of Eufriesia (E. caerulescens, E. mexicana, E. rugosa and one species of Euglossa (E. villosa were recorded for the first time. We report Eulaema meriana as the pollinator of the recently rediscovered Plectrophora alata. We did not detect habitat preferences for the species of Euglossini captured, and they were frequent, or even more frequent, in intensive coffee plantations, as are many of the orchid species, which can be classified as a disturbed habitat. Bees tended to be more abundant with increasing light intensity and decreasing humidity at each site. There was little indication of pollinator specificity and the position of the pollinaria of each orchid species on the bodies of the bees was also variable. We did not recover any pollinaria from various euglossinophylic, epiphytic orchid species present in the region and three bee species showed signs of population decline. However, our results indicate that many species of orchids with this pollination syndrome are receiving pollination service within an increasingly fragmented and disturbed environment, suggesting that both the orchids and the bees are adapting to the changes.

Seed dispersal in six species of terrestrial orchids in Biebrza National Park (NE Poland

Directory of Open Access Journals (Sweden)

Emilia Brzosko

2017-09-01

Full Text Available Knowledge about seed dispersal is required to explain problems in ecology, phylogeography, and conservation biology. Even though seed dispersal is a fundamental mechanism to understand problems at different levels of biological organization (individual, population, species, landscape, it remains one of the least recognized processes. Similar to other groups of plants, very little is known regarding patterns and distances of seed dispersal in orchids. Orchid seeds are generally assumed to be widely dispersed by wind because of their small size and low weight. Between 2006 and 2008, we conducted a field study of the distances at which orchid seeds are dispersed, and determined factors affecting dispersal. Investigations included 13 populations of six terrestrial orchid species – Cypripedium calceolus, Cephalanthera rubra, Epipactis helleborine, Goodyera repens, Neottia ovata, and Platanthera bifolia. To evaluate seed dispersal in orchid populations, 8.5-cm Petri dishes (traps with self-adhesive paper were placed along transects, starting from a group of fruiting plants, which were considered to be the dispersal source. Seeds of the investigated orchid species were dispersed over relatively short distances. There were statistically significant negative correlations between seed density and distance from the fruiting plants. Seeds of species with taller fruiting shoots were dispersed farther than those with shorter ones (R = 0.68, p < 0.05. We discuss the causes and consequences of the dispersal patterns of orchid seeds.

Air pollution as it affects orchids at the New York Botanical Garden

Energy Technology Data Exchange (ETDEWEB)

Adderley, L.

1965-08-01

A general discussion of the effects of air pollution on orchids is presented, along with ameliorative measures. One orchid, Dendrobium Phalaenopsis, is suggested as an air pollution bioassay tool, in that it is extremely sensitive to air pollution.

Atractiellomycetes belonging to the ‘rust’ lineage (Pucciniomycotina) form mycorrhizae with terrestrial and epiphytic neotropical orchids

Science.gov (United States)

Kottke, Ingrid; Suárez, Juan Pablo; Herrera, Paulo; Cruz, Dario; Bauer, Robert; Haug, Ingeborg; Garnica, Sigisfredo

2010-01-01

Distinctive groups of fungi are involved in the diverse mycorrhizal associations of land plants. All previously known mycorrhiza-forming Basidiomycota associated with trees, ericads, liverworts or orchids are hosted in Agaricomycetes, Agaricomycotina. Here we demonstrate for the first time that Atractiellomycetes, members of the ‘rust’ lineage (Pucciniomycotina), are mycobionts of orchids. The mycobionts of 103 terrestrial and epiphytic orchid individuals, sampled in the tropical mountain rainforest of Southern Ecuador, were identified by sequencing the whole ITS1-5.8S-ITS2 region and part of 28S rDNA. Mycorrhizae of 13 orchid individuals were investigated by transmission electron microscopy. Simple septal pores and symplechosomes in the hyphal coils of mycorrhizae from four orchid individuals indicated members of Atractiellomycetes. Molecular phylogeny of sequences from mycobionts of 32 orchid individuals out of 103 samples confirmed Atractiellomycetes and the placement in Pucciniomycotina, previously known to comprise only parasitic and saprophytic fungi. Thus, our finding reveals these fungi, frequently associated to neotropical orchids, as the most basal living basidiomycetes involved in mycorrhizal associations of land plants. PMID:20007181

Roadside verges as habitats for endangered lizard-orchids (Himantoglossum spp.): Ecological traps or refuges?

Science.gov (United States)

Fekete, Réka; Nagy, Timea; Bódis, Judit; Biró, Éva; Löki, Viktor; Süveges, Kristóf; Takács, Attila; Tökölyi, Jácint; Molnár V, Attila

2017-12-31

Alterations in traditional land use practices have led to severe declines in the area of semi-natural grasslands, thereby seriously threatening plant and animal species dependent on these habitats. Small anthropogenic managed habitats, like roadsides can act as refuges and might play an important role in conserving these species. Colonization of roadside verges by endangered lizard orchids (Himantoglossum spp.) has long been known, but few studies have systematically explored the suitability of roadside habitats for these orchids and the impact of roads on them. In this paper we present results of targeted surveys of three lizard orchid taxa on roadsides from eight European countries. During these surveys we searched for lizard orchids inhabiting roadside verges and recorded their distance from road, aspects of the roadside environment, as well as vegetative and reproductive characteristics of individual plants. We found large numbers of lizard orchids on roadside verges. Distance from roads was not uniformly distributed: orchids occurred more closely to roads than expected by chance. This suggests that regular management of roadsides (e.g. mowing) might enhance colonization and survival of lizard orchids. On the other hand, we also found that close proximity to roads negatively affects reproductive success, suggesting that the immediate vicinity of roads might act as an ecological trap (i.e. favorable in terms of colonization and survival but unfavorable in terms of reproduction). Nonetheless, the fact that significant and viable populations are maintained at roadsides suggests that traditionally managed roadside verges may allow long-term persistence of lizard orchid populations and may serve as refuges in a landscape context. Copyright © 2017 Elsevier B.V. All rights reserved.

Western Pairie Fringed Orchid: Its Status, Ecology, and in Vitro Propagation

Science.gov (United States)

Jyotsna Sharma; J. W. Van Sambeek; Christopher J. Starbuck

2002-01-01

Western prairie fringed orchid (Platanthera praeclara Sheviak and Bowles), listed in 1989 as federally threatened, has been extirpated from 75% of historic sites throughout its range. We describe (a) threats to the orchid; (b) seed germination on synthetic medium; and (c) in vitro germination with mycorrhizal fungi. Destruction of prairies for...

Orchid diversity at a residual plateu on Caroebe, Roraima

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Francisco Joaci de Freitas Luz

2016-10-01

Full Text Available Orchids were observed in a granitic mountain hill at the, Caroebe road 35, Roraima, at February and June of 2016. It was observed the occurrence of orchids in three different points: the base of the mountain, with typical humid tropical dry land forest; the forest around the rocky top of the mountain, with the presence of thin trees about 15 meters high, medium light entrance below the vegetation; and the granitic plateau, more sun incidence and surrounded by small shrubs. The total area surveyed was of 5 hectares. The orchids encountered in the whole trail were prior identified locally, just as their localization by GPS and according to their growth habit (epiphytic, terrestrial or rupicolous. It was found 28 species. The majority of the indivíduals identified in this survey were found on organic layers accumulated over the granitic rock, as follow: Catasetum planiceps, Catasetum discolor, Cyrtopodium andersonii, Encyclia granitica, Epidendrum ibaguense, Epidendrum viviparum, Cleistes rosea e Nohawilliamsia pirarensis. At the forest that surrounds the rocky hill it was observed, associated to small trees, the following epiphyte orchids: Dimerandra emarginata, Octomeria sp., Scaphyglottis sickii, Trigonidium acuminatum and Cattleya violacea. At the forest covering the base of the mountain it was found the larger number of species (13, with predominance of epiphytes. Besides the larger number found, the frequency of these species was very low, except for Camaridium ochroleucum and Heterotaxis superflua that were found in larger quantity associated to some sort of trees. The specie Liparis nervosa was found only associated to the base of a unique tree, over the organic matter accumulated locally. The large number of orchids found in the study area indicates its importance for more comprehensive studies and stresses the importance for conservation.

Investigation of Endophytic Bacterial Community in Supposedly Axenic Cultures of Pineapple and Orchids with Evidence on Abundant Intracellular Bacteria.

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Esposito-Polesi, Natalia Pimentel; de Abreu-Tarazi, Monita Fiori; de Almeida, Cristina Vieira; Tsai, Siu Mui; de Almeida, Marcílio

2017-01-01

Asepsis, defined as the absence of microbial contamination, is one of the most important requirements of plant micropropagation. In long-term micropropagated cultures, there may occasionally occur scattered microorganism growth in the culture medium. These microorganisms are common plant components and are known as latent endophytes. Thus, the aim of this research was to investigate the presence of endophytic bacteria in asymptomatic pineapple and orchid microplants, which were cultivated in three laboratories for 1 year. Isolation and characterization of bacterial isolates, PCR-DGGE from total genomic DNA of microplants and ultrastructural analysis of leaves were performed. In the culture-dependent technique, it was only possible to obtain bacterial isolates from pineapple microplants. In this case, the bacteria genera identified in the isolation technique were Bacillus, Acinetobacter, and Methylobacterium. The scanning electron microscopy and transmission electron microscopy (SEM and TEM) analyses revealed the presence of endophytic bacteria in intracellular spaces in the leaves of pineapple and orchid microplants, independent of the laboratory or cultivation protocol. Our results strongly indicate that there are endophytic bacterial communities inhabiting the microplants before initiation of the in vitro culture and that some of these endophytes persist in their latent form and can also grow in the culture medium even after long-term micropropagation, thus discarding the concept of "truly axenic plants."

Culture media used in the micropropagation of orchids hybrids

OpenAIRE

Luzia Yuriko Miyata; Fabíola Villa

2014-01-01

In orchid cultivation, tissue culture has been an important and effective tool for obtaining good quality seedlings on a large scale and within a short period of time. This study aims to evaluate culture media on the in vitro growth and development of orchid hybrids. Seedlings 1-1.5 cm long, deriving from in vitro germination of seeds, were inoculated in 250 mL flasks containing 50 mL of culture medium, with salts from the media where each of them were treated. Treatments consisted of applyin...

Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations.

Science.gov (United States)

Cario, Clinton L; Witte, John S

2018-03-15

As whole-genome tumor sequence and biological annotation datasets grow in size, number and content, there is an increasing basic science and clinical need for efficient and accurate data management and analysis software. With the emergence of increasingly sophisticated data stores, execution environments and machine learning algorithms, there is also a need for the integration of functionality across frameworks. We present orchid, a python based software package for the management, annotation and machine learning of cancer mutations. Building on technologies of parallel workflow execution, in-memory database storage and machine learning analytics, orchid efficiently handles millions of mutations and hundreds of features in an easy-to-use manner. We describe the implementation of orchid and demonstrate its ability to distinguish tissue of origin in 12 tumor types based on 339 features using a random forest classifier. Orchid and our annotated tumor mutation database are freely available at https://github.com/wittelab/orchid. Software is implemented in python 2.7, and makes use of MySQL or MemSQL databases. Groovy 2.4.5 is optionally required for parallel workflow execution. JWitte@ucsf.edu. Supplementary data are available at Bioinformatics online.

KERAGAMAN ANGGREK EPIFIT DI KAWASAN HUTAN ALAM DESA PETARIKAN, KABUPATEN KOTAWARINGIN BARAT - KALIMANTAN TENGAH

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Nina Dwi Yulia

2008-07-01

Full Text Available A study on the diversity of epiphytic orchids in the natural forest at the Village Petarikan, District Kotawaringin Barat, Central Kalimantan was carried out. All routes in the area of study were investigated. The number of epiphytic orchids found was 32 genera, consisting of 99 species. The most common species were those of genera Bulbophyllum and Dendrobium. Some of them were endemic to Kalimantan, i.e. Dendrobium nabawanense, Bulbophyllum beccarii, Dendrochilum oxylobum, Liparis lobongensis and Porpax borneensis. These orchids were frequently found on Saraca declinata, Dipterocarpus sp. and Durio zibethinus.

Conservation value and permeability of neotropical oil palm landscapes for orchid bees.

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George Livingston

Full Text Available The proliferation of oil palm plantations has led to dramatic changes in tropical landscapes across the globe. However, relatively little is known about the effects of oil palm expansion on biodiversity, especially in key ecosystem-service providing organisms like pollinators. Rapid land use change is exacerbated by limited knowledge of the mechanisms causing biodiversity decline in the tropics, particularly those involving landscape features. We examined these mechanisms by undertaking a survey of orchid bees, a well-known group of Neotropical pollinators, across forest and oil palm plantations in Costa Rica. We used chemical baits to survey the community in four regions: continuous forest sites, oil palm sites immediately adjacent to forest, oil palm sites 2 km from forest, and oil palm sites greater than 5 km from forest. We found that although orchid bees are present in all environments, orchid bee communities diverged across the gradient, and community richness, abundance, and similarity to forest declined as distance from forest increased. In addition, mean phylogenetic distance of the orchid bee community declined and was more clustered in oil palm. Community traits also differed with individuals in oil palm having shorter average tongue length and larger average geographic range size than those in the forest. Our results indicate two key features about Neotropical landscapes that contain oil palm: 1 oil palm is selectively permeable to orchid bees and 2 orchid bee communities in oil palm have distinct phylogenetic and trait structure compared to communities in forest. These results suggest that conservation and management efforts in oil palm-cultivating regions should focus on landscape features.

Sex and the Catasetinae (Darwin's favourite orchids).

Science.gov (United States)

Pérez-Escobar, Oscar Alejandro; Gottschling, Marc; Whitten, W Mark; Salazar, Gerardo; Gerlach, Günter

2016-04-01

Two sexual systems are predominant in Catasetinae (Orchidaceae), namely protandry (which has evolved in other orchid lineages as well) and environmental sex determination (ESD) being a unique trait among Orchidaceae. Yet, the lack of a robust phylogenetic framework for Catasetinae has hampered deeper insights in origin and evolution of sexual systems. To investigate the origins of protandry and ESD in Catasetinae, we sequenced nuclear and chloroplast loci from 77 species, providing the most extensive data matrix of Catasetinae available so far with all major lineages represented. We used Maximum Parsimony, Maximum Likelihood and Bayesian methods to infer phylogenetic relationships and evolution of sexual systems. Irrespectively of the methods used, Catasetinae were monophyletic in molecular phylogenies, with all established generic lineages and their relationships resolved and highly supported. According to comparative reconstruction approaches, the last common ancestor of Catasetinae was inferred as having bisexual flowers (i.e., lacking protandry and ESD as well), and protandry originated once in core Catasetinae (comprising Catasetum, Clowesia, Cycnoches, Dressleria and Mormodes). In addition, three independent gains of ESD are reliably inferred, linked to corresponding loss of protandry within core Catasetinae. Thus, prior gain of protandry appears as the necessary prerequisite for gain of ESD in orchids. Our results contribute to a comprehensive evolutionary scenario for sexual systems in Catasetinae and more generally in orchids as well. Copyright © 2015 Elsevier Inc. All rights reserved.

Epiphytic orchids and host trees diversity at Gunung Manyutan Forest Reserve, Wilis Mountain, Ponorogo, East Java

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NINA DWI YULIA

2011-01-01

Full Text Available Yulia ND, Budiharta S (2011 Epiphytic orchids and host trees diversity at Gunung Manyutan Forest Reserve, Wilis Mountain, Ponorogo, East Java. Biodiversitas 12: 22-27. Natural forests in Wilis Mountain have been destroyed by forest fires, landslides and illegal logging. As a consequence, biological diversity in this area is threatened by local extinctions, particularly of orchid species. This study was aimed to explore, document and analyze the diversity of epiphytic orchids at Gunung Manyutan Forest Reserve, a natural forest area in Wilis Mountain. Purposive sampling on 1 hectare (50 x 200 m2 contiguous plot was used. This plot was divided into eight subplots (25 x 50 m2. All data on orchid species were recorded including its number, host trees and zone of the host tree where the orchid attached. The results showed that there were 29 epiphytic orchid species recorded. Flickingeria angulata was the most abundant species (Relative Abundance of orchids/ %Fo = 38.74, continued by Appendicula sp. (%Fo = 10.91 and Eria hyacinthoides (%Fo = 6.57. The three most important host trees were Pinus merkusii, Schima wallichii and Engelhardia spicata. Zone 3 (bottom part of the branches was revealed as the most favorable part at the host tree (281 individuals, while Zone 1 (bottom part of the main stem was the least preferable one.

Genetics of Pseudococcusmicrocirculus on orchids RESEARCH

Indian Academy of Sciences (India)

Navya

Genetic Structure of Pseudococcusmicrocirculus (Hemiptera: .... these orchids are listed as endangered on Florida's Regulated Plant Index (Coile and Garland 2003). .... other samples, which we did not have sufficient statistical power to detect. ... males and minute first instar nymphs can use wind currents for dispersal.

The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma

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Philipp Brand

2017-09-01

Full Text Available Bees provide indispensable pollination services to both agricultural crops and wild plant populations, and several species of bees have become important models for the study of learning and memory, plant–insect interactions, and social behavior. Orchid bees (Apidae: Euglossini are especially important to the fields of pollination ecology, evolution, and species conservation. Here we report the nuclear and mitochondrial genome sequences of the orchid bee Euglossa dilemma Bembé & Eltz. E. dilemma was selected because it is widely distributed, highly abundant, and it was recently naturalized in the southeastern United States. We provide a high-quality assembly of the 3.3 Gb genome, and an official gene set of 15,904 gene annotations. We find high conservation of gene synteny with the honey bee throughout 80 MY of divergence time. This genomic resource represents the first draft genome of the orchid bee genus Euglossa, and the first draft orchid bee mitochondrial genome, thus representing a valuable resource to the research community.

Culture media used in the micropropagation of orchids hybrids

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Luzia Yuriko Miyata

2014-09-01

Full Text Available In orchid cultivation, tissue culture has been an important and effective tool for obtaining good quality seedlings on a large scale and within a short period of time. This study aims to evaluate culture media on the in vitro growth and development of orchid hybrids. Seedlings 1-1.5 cm long, deriving from in vitro germination of seeds, were inoculated in 250 mL flasks containing 50 mL of culture medium, with salts from the media where each of them were treated. Treatments consisted of applying culture media (MS; DSD1; Knudson; B5; and WPM, combined with 5 orchid hybrids (CW1, CW2, CW3, CI e BLC. The media were added 2 g L-1 of activated charcoal and solidified with 5 g L-1 of agar, and their pH was adjusted to 5.8 ± 0.1, before autoclaving at 121°C and at 1.1 atm for 20 minutes. After sterilization of media, seedlings were inoculated in a laminar flow chamber and then kept in a growth room at the temperature of 25 ± 1ºC, with photoperiod of 16 h and irradiance of 32 ?mol.m–2.s–1. The experimental design was completely randomized, in a factorial 5 x 5 scheme, containing 6 seedlings per repetition. After 120 days, we evaluated root number, shoot number, leaf and root length, and fresh root weight. In in vitro cultivation of orchids, the media standing out are MS and DSD1 and the hybrids CI, CW1, and BLC.

Irregular flowering patterns in terrestrial orchids: theories vs. empirical data

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P. Kindlmann

2001-11-01

Full Text Available Empirical data on many species of terrestrial orchids suggest that their between-year flowering pattern is extremely irregular and unpredictable. A long search for the reason has hitherto proved inconclusive. Here we summarise and critically review the hypotheses that were put forward as explanations of this phenomenon: irregular flowering was attributed to costs associated with sexual reproduction, to herbivory, or to the chaotic behaviour of the system represented by difference equations describing growth of the vegetative and reproductive organs. None of these seems to explain fully the events of a transition from flowering one year to sterility or absence the next year. Data on the seasonal growth of leaves and inflorescence of two terrestrial orchid species, Epipactis albensis and Dactylorhiza fuchsii and our previous results are then used here to fill gaps in what has been published until now and to test alternative explanations of the irregular flowering patterns of orchids.

Perspectives on MADS-box expression during orchid flower evolution and development

OpenAIRE

Mondrag?n-Palomino, Mariana

2013-01-01

The diverse morphology of orchid flowers and their complex, often deceptive strategies to become pollinated have fascinated researchers for a long time. However, it was not until the 20th century that the ontogeny of orchid flowers, the genetic basis of their morphology and the complex phylogeny of Orchidaceae were investigated. In parallel, the improvement of techniques for in vitro seed germination and tissue culture, together with studies on biochemistry, physiology, and cytology supported...

REUSING STOCKS SOLUTIONS WITH DIFFERENT FORMULATED FOR ORCHID FERTILIZER ACCLIMATIZATION PHASE

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C. G. C. Issa

2018-04-01

Full Text Available Orchids are ornamental plants that stand out by their colors, types, shapes, size, beauty. Additionally, some species have aromas. This diversity of orchids makes it be greatly appreciated as potted plants, landscaping, with high commercial value. The aim of this study was to evaluate the development of orchids at different levels of fertilization by reusing nutrients added to the culture medium for cultivation in vitro is also analyzing the different times of acclimatization. The micropropagated orchids removed from the growth chamber, were transported to greenhouse composing the different treatments for acclimatization (0, 10, 20, 30, 40 and 50 days. To be transplanted were placed in pine bark substrate and Sphagnum being placed in trays. After 30 days the seedlings were transplanted to styrofoam trays was initiated plant fertilization weekly with different formulated by administering 5 ml each (1 humic acid, 2nd potassium nitrate (KNO3, 3rd humic acid + Nitrate potassium (KNO3, 4th calcium chloride (CaCl2, 5 ° control. Six months after withdrawal of the growth room the plants was carried out the evaluation of the experiment where the plant survival was evaluated by the number of shoots, number of leaves, the length of the largest leaf and root presence. The experimental design was completely randomized in a factorial 6x5, with the time of acclimatization (0, 10, 20, 30, 40 and 50 days the first factor and the second, the type of fertilizer used (4 formulated and the witness with 8 replicates per treatment. The data were submitted to deviance analysis in the software R. In this study, the need to fertilize with nutrient rich formulations for orchids in the acclimatization phase was contacted and that these should remain for a few days inside the jars in a greenhouse environment.

Peptone and tomato extract induced early stage of embryo development of Dendrobium phalaenopsis Orchid

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Nintya Setiari

2017-04-01

Full Text Available Germination and growth of orchid seeds can be accelerated by the addition of organic supplement and plant extract in culture medium. The objective of this study was to determine the effect of peptone and tomato extract on early stage of embryo development of Dendrobium phalaenopsis orchids. Orchid seeds were sown on NP and VW medium with addition of 10% of CW (NPCW and VWCW.  Five weeks after seed germination, about 58.03% seed germination was observed on VWCW medium, and only 37.45% seed germination on NPCW. Tomato extract and peptone were added in VWCW, resulting VWCWTP medium. After 4-8 weeks on VWCWTP, 94.42% seeds was germinated into plantlet, but only 67.30% germinated seeds on VWCW. To get optimal growth and development of  D.  phalaenopsis orchids embryos in the in vitro condition, supplement of 100 ml.L-1 coconut water, 100 mg.L-1 tomato extract and 2 mg.L-1 peptone into VW basic medium is required.

Agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation

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Matheus Marchezi Mora

2015-02-01

Full Text Available For orchid cultivation in containers is essential to select the right substrate, since this will influence the quality of the final product, it serve as a support for the root system of the plants. This study aimed to evaluate different agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation. The plants were subjected to treatments: pinus husk + carbonized rice husk, pinus husk + coffee husk, pinus husk + fibered coconut, pecan nut husk, expanded clay, fibered coconut, coffee husk, carbonized rice husk, pinus husk. After eleven months of the experiment, the following variables were evaluated: plant height; largest pseudo-bulb diameter; number of buds; shoot fresh dry matter; the longest root length; number of roots; root fresh matter; root dry matter; and electric conductivity; pH and water retention capacity of the substrates. Except the expanded clay, the other substrates showed satisfactory results in one or more traits. Standing out among these substrates pinus husk + coffee husk and pine bark + fibered coconut, which favored the most vegetative and root characteristic of the orchid. The mixture of pinus husk + coffee husk and pinus husk + fibered coconut, provided the best results in vegetative and root growth of the orchid Oncidium baueri and the expanded clay did not show favorable results in the cultivation of this species.

Floral fragrance analysis of Prosthechea cochleata (Orchidaceae), an endangered native, epiphytic orchid, in Florida

Science.gov (United States)

South Florida is home to a number of native species of orchids. The Florida Panther National Wildlife Refuge has 27 known species, including Prosthechea cochleata, the clamshell orchid, which is listed as endangered on Florida's Regulated Plant Index. In a prior study done on this species in Mexico,...

Mutation induction of orchids by ion beams

International Nuclear Information System (INIS)

Affrida Abu Hassan; Zaiton Ahmad; Sakinah Ariffin; Oono, Yutaka; Hase, Yoshihiro; Shikazono; Naoya; Narumi, Issay; Tanaka, Atsushi

2010-01-01

Mutation induction using ionizing radiation provides an effective alternative means for improvement of orchids. In this study, ion beams were used because they have much higher linear energy transfer (LET) than X-rays or gamma rays, and subsequently lead to higher mutation frequency and broad mutation spectrum. The proto corm-like bodies (PLBs) of three orchid species (Dendrobium crumenatum, Dendrobium mirbellianum) were irradiated at various doses with 320 MeV 12 C 6+ ions accelerated by Azimuthally Varying Field (AVF) cyclotron at JAEAs Takasaki Ion Accelerators for Advanced Radiation Application (TIARA). The optimum irradiation condition and the effect of irradiation on each species were studied, particularly on flower colour and morphology, flowering habit and insect resistance. Dose effects on plantlet regeneration for each species were also obtained. Some morphological changes were observed in flowers of Dendrobium crumenatum, whilst one insect resistant mutant was obtained in Dendrobium mirbellianum. (author)

In planta transformation method for T-DNA transfer in orchids

Science.gov (United States)

Semiarti, Endang; Purwantoro, Aziz; Mercuriani, Ixora S.; Anggriasari, Anida M.; Jang, Seonghoe; Suhandono, Sony; Machida, Yasunori; Machida, Chiyoko

2014-03-01

Transgenic plant technology is an efficient tool to study the function of gene(s) in plant. The most popular and widely used technique is Agrobacterium-mediated transformation in which cocultivation was done by immersing the plant tissues/organ in overnight bacterial cultured for about 30 minutes to one hour under in vitro condition. In this experiment, we developed more easier technique that omitted the in vitro step during cocultivation with Agrobacterium, namely in planta transformation method. Pollinaria (compact pollen mass of orchid) of Phalaenopsis amabilis and Spathoglottis plicata orchids were used as target explants that were immersed into bacterial culture for 30 minutes, then dried up the pollinaria, the transformed pollinaria was used to pollinate orchid flowers. The T-DNA used for this experiments were Ubipro∷PaFT/A. tumefaciens GV3101 for P. amabilis and MeEF1α2 pro∷GUS/ A. tumefaciens LBA 4404 for S.plicata. Seeds that were produced from pollinated flowers were grown onto 10 mg/l hygromicin containing NP (New Phalaenopsis) medium. The existance of transgene in putative transformant protocorm (developing orchid embryo) genome was confirmed using PCR with specific primers of either PaFT or GUS genes. Histochemical GUS assay was also performed to the putative transformants. The result showed that transformation frequencies were 2.1 % in P. amabilis, and 0,53% in S. plicata. These results indicates that in planta transformation method could be used for Agrobacterium-mediated genetic transformation, with advantage easier and more secure work from contaminants than that of the in vitro method.

Changes in Orchid Bee Communities Across Forest-Agroecosystem Boundaries in Brazilian Atlantic Forest Landscapes.

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De Aguiar, Willian Moura; Sofia, Silvia H; Melo, Gabriel A R; Gaglianone, Maria Cristina

2015-12-01

Deforestation has dramatically reduced the extent of Atlantic Forest cover in Brazil. Orchid bees are key pollinators in neotropical forest, and many species are sensitive to anthropogenic interference. In this sense understanding the matrix permeability for these bees is important for maintaining genetic diversity and pollination services. Our main objective was to assess whether the composition, abundance, and diversity of orchid bees in matrices differed from those in Atlantic forest. To do this we sampled orchid bees at 4-mo intervals from 2007 to 2009 in remnants of Atlantic Forest, and in the surrounding pasture and eucalyptus matrices. The abundance, richness, and diversity of orchid bees diminished significantly from the forest fragment toward the matrix points in the eucalyptus and pasture. Some common or intermediate species in the forest areas, such as Eulaema cingulata (F.) and Euglossa fimbriata Moure, respectively, become rare species in the matrices. Our results show that the orchid bee community is affected by the matrices surrounding the forest fragments. They also suggest that connections between forest fragments need to be improved using friendly matrices that can provide more favorable conditions for bees and increase their dispersal between fragments. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

The Ultrastructure Of Pollinia Of Ten Species Of Orchid In Substribe Aeridinae (ORCHIDACEAE)

International Nuclear Information System (INIS)

Sulistyono; Purbaningsih, Susiani; Pujoarianto, Agus

2000-01-01

Orchid taxonimy lags several decades behind the taxonomy of most other large interisting groups of plants. New methods and techiniques, like scanning and transmission electron microscope are rarely applied in orchid's taxonomy. It would be most benefical to orchid taxonomy if a better understanding of the pollinia could be obtained. The main purpose of this research is to study the ultrastructure pollinia of ten species of Aeridinae (Orchidaceae). The scanning electron microscope (SEM) has been used to study the pollinia of ten species of orchids in the substribe Aeridina. This work shows that the ultrastructure of the pollinias are different. Regarding at the number and the surface of pollinia in one flowe, the ten species of Aeridinae can be devided mto three main group: (1) the first group is the flowe with two pollinia with it surface porate : Ascocentrum miniatum; (2) the second group has the same number of pollinia, but with surface cleft : Phalaenopsis. Ph. amboinensis, Ph.cornu-cervi, Ph. Fuscata, Ph. Venosa, Rhychostylis retusa, Vanda limbota, and Vanda insignis: and the third (3)is the flower with four pollinia, unequel : Kingidium deliciosum

SENSITIVITY OF PIGMENT CONTENT OF BANANA AND ORCHID TISSUE CULTURE EXPOSED TO EXTREMELY LOW FREQUENCY ELECTROMAGNETIC FIEL

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Riry Prihatini

2017-01-01

Full Text Available Natural exposure of extremely low frequency electromagnetic field (ELF-EMF occurs in the environment and acts as one of the abiotic factors that affect the growth and development of organisms. This study was conducted to determine the effect of ELF-EMF on the tissue cultured banana and slipper orchid chlorophyll content as one of the indicators in measuring plant photosynthetic capacity. Four days old banana (Musa sp. cv. Berangan corm and seven days old slipper orchid (Paphiopedilum rothschildianum cultures were exposed to 6 and 12 mT ELF-EMF generated by controllable ELF-EMF built up machine for 0.5, 1, 2 and 4 hours. After exposure, the banana and orchid cultures were incubated at 25° C for 8 and 16 weeks, respectively. The results showed that the ELF-EMF exposure had different effects on banana and slipper orchid cultures though both plant species belong to monocotyledon. The highest increase in chlorophyll content on banana was resulted by the high intensity and long duration of ELF-EMF exposure (12 mT for 4 hours, whereas on slipper orchid the modest and short duration of ELF-EMF exposure produced the most excessive chlorophyll content. Different ELF-EMF exposures (12 mT for 4 hours and 6 mT for 30 minutes had potential to be applied on each plant to improve in vitro plant (banana and slipper orchid, respectively growth. The increased chlorophyll and carotene/xanthophyll content on banana indicated that the banana was more tolerant to ELF-EMF exposure compared to slipper orchid. 

The epiphytic orchids Ionopsis utricularioides and Psygmorchis pusilla associate with different Ceratobasidium lineages at Valle del Cauca, Colombia

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Rafael Borges da Silva Valadares

2015-03-01

Full Text Available In Orchidaceae, association with symbiotic fungi is required for seed germination and seedling development, thereby being the main energy source during the first steps of germination. Colombia is one of the countries with the greatest biodiversity of orchids, with an estimated 3,200 species, but few studies on orchid mycorrhiza have been conducted. In our study, we isolated and sequenced the internal transcribed spacer rDNA region of fungi from two co-occurring Colombian epiphytic orchids, I. utricularioides and P. pusilla, both belonging to the subtribe Oncidiinae. All sequences were recognized as belonging to the genus Ceratobasidium, known to be a common orchid mycorrhizal fungus in both tropical and temperate orchids. One sequence was 100% similar to fungi isolated from I. utricularioides in Costa Rica in a previous study. I. utricularioides was confirmed to be a specialist, associating with only one clade of mycorrhizal fungi. However, P. pusilla was shown to be a generalist, associating with three clades. This finding indicates that the variation in mycorrhizal specificity could be an important factor in the co-existence of orchids. The high affinity between the subtribe Oncidiinae and Ceratobasidium was also reinforced.

Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot.

Science.gov (United States)

Pérez-Escobar, Oscar Alejandro; Chomicki, Guillaume; Condamine, Fabien L; Karremans, Adam P; Bogarín, Diego; Matzke, Nicholas J; Silvestro, Daniele; Antonelli, Alexandre

2017-07-01

The Andean mountains of South America are the most species-rich biodiversity hotspot worldwide with c. 15% of the world's plant species, in only 1% of the world's land surface. Orchids are a key element of the Andean flora, and one of the most prominent components of the Neotropical epiphyte diversity, yet very little is known about their origin and diversification. We address this knowledge gap by inferring the biogeographical history and diversification dynamics of the two largest Neotropical orchid groups (Cymbidieae and Pleurothallidinae), using two unparalleled, densely sampled orchid phylogenies (including more than 400 newly generated DNA sequences), comparative phylogenetic methods, geological and biological datasets. We find that the majority of Andean orchid lineages only originated in the last 20-15 million yr. Andean lineages are derived from lowland Amazonian ancestors, with additional contributions from Central America and the Antilles. Species diversification is correlated with Andean orogeny, and multiple migrations and recolonizations across the Andes indicate that mountains do not constrain orchid dispersal over long timescales. Our study sheds new light on the timing and geography of a major Neotropical diversification, and suggests that mountain uplift promotes species diversification across all elevational zones. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids.

Science.gov (United States)

Sedeek, Khalid E M; Qi, Weihong; Schauer, Monica A; Gupta, Alok K; Poveda, Lucy; Xu, Shuqing; Liu, Zhong-Jian; Grossniklaus, Ueli; Schiestl, Florian P; Schlüter, Philipp M

2013-01-01

Sexually deceptive orchids of the genus Ophrys mimic the mating signals of their pollinator females to attract males as pollinators. This mode of pollination is highly specific and leads to strong reproductive isolation between species. This study aims to identify candidate genes responsible for pollinator attraction and reproductive isolation between three closely related species, O. exaltata, O. sphegodes and O. garganica. Floral traits such as odour, colour and morphology are necessary for successful pollinator attraction. In particular, different odour hydrocarbon profiles have been linked to differences in specific pollinator attraction among these species. Therefore, the identification of genes involved in these traits is important for understanding the molecular basis of pollinator attraction by sexually deceptive orchids. We have created floral reference transcriptomes and proteomes for these three Ophrys species using a combination of next-generation sequencing (454 and Solexa), Sanger sequencing, and shotgun proteomics (tandem mass spectrometry). In total, 121 917 unique transcripts and 3531 proteins were identified. This represents the first orchid proteome and transcriptome from the orchid subfamily Orchidoideae. Proteome data revealed proteins corresponding to 2644 transcripts and 887 proteins not observed in the transcriptome. Candidate genes for hydrocarbon and anthocyanin biosynthesis were represented by 156 and 61 unique transcripts in 20 and 7 genes classes, respectively. Moreover, transcription factors putatively involved in the regulation of flower odour, colour and morphology were annotated, including Myb, MADS and TCP factors. Our comprehensive data set generated by combining transcriptome and proteome technologies allowed identification of candidate genes for pollinator attraction and reproductive isolation among sexually deceptive orchids. This includes genes for hydrocarbon and anthocyanin biosynthesis and regulation, and the development of

Growth promotion-related miRNAs in Oncidium orchid roots colonized by the endophytic fungus Piriformospora indica.

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Wei Ye

Full Text Available Piriformospora indica, an endophytic fungus of Sebacinales, colonizes the roots of a wide range of host plants and establishes various benefits for the plants. In this work, we describe miRNAs which are upregulated in Oncidium orchid roots after colonization by the fungus. Growth promotion and vigorous root development were observed in Oncidium hybrid orchid, while seedlings were colonized by P. indica. We performed a genome-wide expression profiling of small RNAs in Oncidium orchid roots either colonized or not-colonized by P. indica. After sequencing, 24,570,250 and 24744,141 clean reads were obtained from two libraries. 13,736 from 17,036,953 unique sequences showed homology to either 86 miRNA families described in 41 plant species, or to 46 potential novel miRNAs, or to 51 corresponding miRNA precursors. The predicted target genes of these miRNAs are mainly involved in auxin signal perception and transduction, transcription, development and plant defense. The expression analysis of miRNAs and target genes demonstrated the regulatory functions they may participate in. This study revealed that growth stimulation of the Oncidium orchid after colonization by P. indica includes an intricate network of miRNAs and their targets. The symbiotic function of P. indica on Oncidium orchid resembles previous findings on Chinese cabbage. This is the first study on growth regulation and development of Oncidium orchid by miRNAs induced by the symbiotic fungus P. indica.

New Species of Orchids from Vietnam

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Leonid V. Averyanov

2007-12-01

Full Text Available Identification of herbarium specimens collected in course of field exploration works in Vietnam during 2005-2007 revealed ten species of orchids new for science. Illustrated descriptions are provided for each discovered species, which are named as Anoectochilus papillosus, Arundina caespitosa, Bulbophyllum paraemarginatum, B. sinhoënse, Cheirostylis foliosa, Goodyera rhombodoides, Liparis rivularis, Oberonia multidentata, O. trichophora and Sunipia nigricans.

Sympatric speciation: perfume preferences of orchid bee lineages.

Science.gov (United States)

Jackson, Duncan E

2008-12-09

Female attraction to an environmentally derived mating signal released by male orchid bees may be tightly linked to shared olfactory preferences of both sexes. A change in perfume preference may have led to divergence of two morphologically distinct lineages.

Decision Making of Thai Entrepreneur to Internationalize Thai Orchid to Swedish Market

OpenAIRE

Sumanonta, Thitipong; Kulasabjira, Sompoch

2010-01-01

Background     International trade could be seen as the phenomenon beating the resources imbalance among countries in the global market. Therefore, our seeking the competitive advantage of Thailand is to the orchid which is viewed industrial drop of country to increase expansion of export and generate income for Thailand. Moreover, Thailand is one of the leaders which have exported the orchids to foreign countries. For this reason, we would like to study factors which affect to make a decisio...

Organic Additives Improves the in Vitro Growth of Native Orchid Vanda helvola Blume

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Devina DAVID

2015-06-01

Full Text Available In vitro seed germination has been proven to be the most efficient technique to propagate orchid. The application of this aseptic technique has contributed to conservation of many endangered orchid species. In this study, undehisced capsules of Vanda helvola Blume were collected from Orchid Conservation Centre in Lagud Sebrang Agriculture Park, after 120 days from hand pollination and aseptically cultured on three types of basal media such as Murashige and Skoog (MS, Knudson C (KC and Vacin and Went (VW. After 90 days of culture, 66.40 ± 4.14% of seeds successfully germinated on KC medium. The effect of organic additives such as tomato juice, coconut water, peptone and yeast extract at different level of concentrations in KC basal medium were also tested on seed germination and seedling development of this native orchid. After 90 days of culture, over 90% of seeds were tremendously germinated on KC medium supplemented with 10% or 15% (v/v of tomato juice. The incorporation of peptone at 0.1% (w/v in KC basal media promoted rapid development of protocorm to seedling. Seedlings on this treatment produced an average of three leaves and two roots after 90 days of culture and were successfully acclimatized.

Occurrence of Bacillus amyloliquefaciens as a systemic endophyte of vanilla orchids.

Science.gov (United States)

White, James F; Torres, Mónica S; Sullivan, Raymond F; Jabbour, Rabih E; Chen, Qiang; Tadych, Mariusz; Irizarry, Ivelisse; Bergen, Marshall S; Havkin-Frenkel, Daphna; Belanger, Faith C

2014-11-01

We report the occurrence of Bacillus amyloliquefaciens in vanilla orchids (Vanilla phaeantha) and cultivated hybrid vanilla (V. planifolia × V. pompona) as a systemic bacterial endophyte. We determined with light microscopy and isolations that tissues of V. phaeantha and the cultivated hybrid were infected by a bacterial endophyte and that shoot meristems and stomatal areas of stems and leaves were densely colonized. We identified the endophyte as B. amyloliquefaciens using DNA sequence data. Since additional endophyte-free plants and seed of this orchid were not available, additional studies were performed on surrogate hosts Amaranthus caudatus, Ipomoea tricolor, and I. purpurea. Plants of A. caudatus inoculated with B. amyloliquefaciens demonstrated intracellular colonization of guard cells and other epidermal cells, confirming the pattern observed in the orchids. Isolations and histological studies suggest that the bacterium may penetrate deeply into developing plant tissues in shoot meristems, forming endospores in maturing tissues. B. amyloliquefaciens produced fungal inhibitors in culture. In controlled experiments using morning glory seedlings we showed that the bacterium promoted seedling growth and reduced seedling necrosis due to pathogens. We detected the gene for phosphopantetheinyl transferase (sfp), an enzyme in the pathway for production of antifungal lipopeptides, and purified the lipopeptide "surfactin" from cultures of the bacterium. We hypothesize that B. amyloliquefaciens is a robust endophyte and defensive mutualist of vanilla orchids. Whether the symbiosis between this bacterium and its hosts can be managed to protect vanilla crops from diseases is a question that should be evaluated in future research. © 2014 Wiley Periodicals, Inc.

Phenolic Compounds and Antioxidant Activity of Phalaenopsis Orchid Hybrids

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Truong Ngoc Minh

2016-09-01

Full Text Available Phalaenopsis spp. is the most commercially and economically important orchid, but their plant parts are often left unused, which has caused environmental problems. To date, reports on phytochemical analyses were most available on endangered and medicinal orchids. The present study was conducted to determine the total phenolics, total flavonoids, and antioxidant activity of ethanol extracts prepared from leaves and roots of six commercial hybrid Phalaenopsis spp. Leaf extracts of “Chian Xen Queen” contained the highest total phenolics with a value of 11.52 ± 0.43 mg gallic acid equivalent per g dry weight and the highest total flavonoids (4.98 ± 0.27 mg rutin equivalent per g dry weight. The antioxidant activity of root extracts evaluated by DPPH (2,2-diphenyl-1-picrylhydrazyl free radical scavenging assay and β-carotene bleaching method was higher than those of the leaf extracts. Eleven phenolic compounds were identified, namely, protocatechuic acid, p-hydroxybenzoic acid, vanillic acid, caffeic acid, syringic acid, vanillin, ferulic acid, sinapic acid, p-coumaric acid, benzoic acid, and ellagic acid. Ferulic, p-coumaric and sinapic acids were concentrated largely in the roots. The results suggested that the root extracts from hybrid Phalaenopsis spp. could be a potential source of natural antioxidants. This study also helps to reduce the amount of this orchid waste in industrial production, as its roots can be exploited for pharmaceutical purposes.

Shoot multiplication of Paphiopedilum orchid through in vitro cutting ...

African Journals Online (AJOL)

waraporn

2012-09-20

Sep 20, 2012 ... regulators could remain higher shoot multiplication than in other media. The micropropagation ... stalk nodes, buds, root tips and rhizome segments. For mass ... plants, the future mass-market orchids will most likely be.

Floral display, reproductive success, and conservation of terrestrial orchids

Czech Academy of Sciences Publication Activity Database

Kindlmann, Pavel; Jersáková, Jana

2005-01-01

Roč. 26, - (2005), s. 136-144 ISSN 0361-185X Institutional research plan: CEZ:AV0Z60870520 Keywords : deceptiveness * fruit set * number of flowers * Orchis morio * terrestrial orchids Subject RIV: EH - Ecology, Behaviour

Agrobacterium-mediated transformation of the wild orchid Cattleya maxima Lindl

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Augusta Yadira Cueva-Agila

2018-03-01

Full Text Available Protocorms are unique anatomical structures; they are akin to rhizoids and are formed by young orchid seedlings under physiological conditions. Explanted orchid tissues produce similar structures called protocorm-like bodies (PLBs when exposed to appropriate in vitro growing conditions. Both the propagative nature of PLBs and the easiness by which they can be generated, make these structures an attractive alternative to seed-mediated production for growing large numbers of plants. To increase somatic embryogenesis and optimize the procedure, PLBs of Cattleya maxima were transformed using the Agrobacterium tumefaciens method. The T-DNA carried a Hygromycin-resistance gene, a visible marker (GFP5-GUSA and a rice gene encoding the Somatic Embryogenesis Receptor Kinase, deemed to be important for somatic embryogenesis. Treated PLBs generated somatic embryos developing Hygromycin-resistant plantlets. The insertion of T-DNA was confirmed by PCR, and GFP expression was observed using a fluorescent stereomicroscope. Transformed Cattleya maxima PLBs were more efficient in forming somatic embryos (60 - 80 % than untransformed controls (45 - 57 %, and this contrast was maximized in hormone-free, Murashige and Skoog (MS medium (80 % of the transformed plants compared to 57 % of the untransformed ones. This finding supports the notion that SERK plays an important role in Orchid embryogenesis

Effect of electron beam on in vitro cultured orchid organs

Energy Technology Data Exchange (ETDEWEB)

Ryu, Jaihyunk; Bae, Seho; Bae, Changhyu [Sunchon National Univ., Suncheon (Korea, Republic of); Kang, Hyun Suk; Lee, Byung Cheol [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2010-07-01

Ionizing radiations have been effective mutagen sources to overcome the limitation of the useful genetic resources in natural environment. The study was conducted to investigate an effect of electron beam on organogenesis, growth patterns and genetic variation in the irradiated orchid organs. The in utero cultured rhizomes of orchids were irradiated with the electron beam in the dose range of 15Gy to 2240Gy under the condition of various beam energy and beam current. Significant decreases in survival, growth and organogenesis were observed by increase of intensity of electron beam irradiation. The irradiation intensity of lethal dose 50 of the in utero cultured orchid was estimated as approximately 500Gy to 1000Gy under 10MeV/n, and 1000Gy was optimal for growth and organogenesis of the cultures under 10MeV/n with 0.05mA treatment, and 15Gy {approx} 48Gy under 2MeV/n and 0.5mA electron beam condition. RAPD and ISSR analyses for the electron beam irradiated organs were performed to analyze genetic variation under the electron beam condition. Both of RAPD and ISSR analyses showed higher polymorphic rate in the electron-beam irradiated C. gangrene and C. Kaner.

Macroevolution of perfume signalling in orchid bees.

Science.gov (United States)

Weber, Marjorie G; Mitko, Lukasz; Eltz, Thomas; Ramírez, Santiago R

2016-11-01

Theory predicts that both stabilising selection and diversifying selection jointly contribute to the evolution of sexual signalling traits by (1) maintaining the integrity of communication signals within species and (2) promoting the diversification of traits among lineages. However, for many important signalling traits, little is known about whether these dynamics translate into predictable macroevolutionary signatures. Here, we test for macroevolutionary patterns consistent with sexual signalling theory in the perfume signals of neotropical orchid bees, a group well studied for their chemical sexual communication. Our results revealed both high species-specificity and elevated rates of evolution in perfume signals compared to nonsignalling traits. Perfume complexity was correlated with the number of congeners in a species' range, suggesting that perfume evolution may be tied to the remarkably high number of orchid bee species coexisting together in some neotropical communities. Finally, sister-pair comparisons were consistent with both rapid divergence at speciation and character displacement upon secondary contact. Together, our results provide new insight into the macroevolution of sexual signalling in insects. © 2016 The Authors. Ecology Letters published by CNRS and John Wiley & Sons Ltd.

Conservation Genetics of an Endangered Lady’s Slipper Orchid: Cypripedium japonicum in China

Science.gov (United States)

Qian, Xin; Li, Quan-Jian; Liu, Fen; Gong, Mao-Jiang; Wang, Cai-Xia; Tian, Min

2014-01-01

Knowledge about the population genetic variation of the endangered orchid, Cypripedium japonicum, is conducive to the development of conservation strategies. Here, we examined the levels and partitioning of inter-simple sequence repeat (ISSR) diversity (109 loci) in five populations of this orchid to gain insight into its genetic variation and population structure in Eastern and Central China. It harbored considerably lower levels of genetic diversity both at the population (percentage of polymorphic loci (PPL) = 11.19%, Nei’s gene diversity (H) = 0.0416 and Shannon’s information index (I) = 0.0613) and species level (PPL = 38.53%, H = 0.1273 and I = 0.1928) and a significantly higher degree of differentiation among populations (the proportion of the total variance among populations (Φpt) = 0.698) than those typical of ISSR-based studies in other orchid species. Furthermore, the Nei’s genetic distances between populations were independent of the corresponding geographical distances. Two main clusters are shown in an arithmetic average (UPGMA) dendrogram, which is in agreement with the results of principal coordinate analysis (PCoA) analysis and the STRUCTURE program. In addition, individuals within a population were more similar to each other than to those in other populations. Based on the genetic data and our field survey, the development of conservation management for this threatened orchid should include habitat protection, artificial gene flow and ex situ measures. PMID:24983476

Conservation Genetics of an Endangered Lady’s Slipper Orchid: Cypripedium japonicum in China

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Xin Qian

2014-06-01

Full Text Available Knowledge about the population genetic variation of the endangered orchid, Cypripedium japonicum, is conducive to the development of conservation strategies. Here, we examined the levels and partitioning of inter-simple sequence repeat (ISSR diversity (109 loci in five populations of this orchid to gain insight into its genetic variation and population structure in Eastern and Central China. It harbored considerably lower levels of genetic diversity both at the population (percentage of polymorphic loci (PPL = 11.19%, Nei’s gene diversity (H = 0.0416 and Shannon’s information index (I = 0.0613 and species level (PPL = 38.53%, H = 0.1273 and I = 0.1928 and a significantly higher degree of differentiation among populations (the proportion of the total variance among populations (Φpt = 0.698 than those typical of ISSR-based studies in other orchid species. Furthermore, the Nei’s genetic distances between populations were independent of the corresponding geographical distances. Two main clusters are shown in an arithmetic average (UPGMA dendrogram, which is in agreement with the results of principal coordinate analysis (PCoA analysis and the STRUCTURE program. In addition, individuals within a population were more similar to each other than to those in other populations. Based on the genetic data and our field survey, the development of conservation management for this threatened orchid should include habitat protection, artificial gene flow and ex situ measures.

EFFECT OF COMPLEX ORGANIC COMPOUNDS ON GROWTH PLANLET OF DENDROBIUM ORCHID

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Sitti Raodah Garuda

2015-01-01

Full Text Available Uniqueness of stunning Dendrobium variety such as shapes, colors, and sizes are main attraction of this plant. Germination oforchid seeds can be carried out in a laboratory with in vitro techniques.Medium used for germination of orchid seeds are Vacin and Went medium. Researcher stried to add other substances that may increase growth explants, such as complex organic compounds. Study aims to determine effect of complex organic compounds into growth medium VW Dendrobium plantlets. Research used complete randomized design consist five treatment:VW medium without extract (control, VW medium+banana extract, VW medium+ melon extrac, VW medium+guava extract and VW medium+pepaya extract, with three replications, each replication consist two culture bottles.. Each culture bottle planted four planlets. Addition of complex organic compounds such as melon extract gave best vegetative growth of leaves quantity, roots quantity, root length and fresh weight. While guava extract provide best results to plantlet high and saplings. Plant lets with melon extract treatment showed appearance of muscular orchid plantlets is characteristic of plants that can survive during acclimatization. While both guava extract is best used for purpose of orchid plantlets regeneration.

Cytokinin treatment and flower quality in Phalaenopsis orchids ...

African Journals Online (AJOL)

We previously documented an N-6-benzyladenine (BA) protocol to increase spike and flower number in Phalaenopsis orchids. To increase options for growers, we tested two additional cytokinins, kinetin (Kin) and 2-iso-pentenyl adenine (2-iP), comparing them with BA. Two key commercial cultivars were used ...

New names and combinations in Orchidaceae from the Philippines and New Guinea

NARCIS (Netherlands)

Schuiteman, A.; Vogel, de E.F.

2003-01-01

New names and combinations are proposed for species of the orchid genera Bulbophyllum, Dendrobium, Flickingeria, Glomera, Octarrhena and Trichotosia. The genera Ischnocentrum and Sepalosiphon are synonymised with Glomera, while Chitonanthera is synonymised with Octarrhena.

The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb.

Science.gov (United States)

Yan, Liang; Wang, Xiao; Liu, Hui; Tian, Yang; Lian, Jinmin; Yang, Ruijuan; Hao, Shumei; Wang, Xuanjun; Yang, Shengchao; Li, Qiye; Qi, Shuai; Kui, Ling; Okpekum, Moses; Ma, Xiao; Zhang, Jiajin; Ding, Zhaoli; Zhang, Guojie; Wang, Wen; Dong, Yang; Sheng, Jun

2015-06-01

Dendrobium officinale Kimura et Migo is a traditional Chinese orchid herb that has both ornamental value and a broad range of therapeutic effects. Here, we report the first de novo assembled 1.35 Gb genome sequences for D. officinale by combining the second-generation Illumina Hiseq 2000 and third-generation PacBio sequencing technologies. We found that orchids have a complete inflorescence gene set and have some specific inflorescence genes. We observed gene expansion in gene families related to fungus symbiosis and drought resistance. We analyzed biosynthesis pathways of medicinal components of D. officinale and found extensive duplication of SPS and SuSy genes, which are related to polysaccharide generation, and that the pathway of D. officinale alkaloid synthesis could be extended to generate 16-epivellosimine. The D. officinale genome assembly demonstrates a new approach to deciphering large complex genomes and, as an important orchid species and a traditional Chinese medicine, the D. officinale genome will facilitate future research on the evolution of orchid plants, as well as the study of medicinal components and potential genetic breeding of the dendrobe. Copyright © 2015 The Author. Published by Elsevier Inc. All rights reserved.

Elleanthus ortizianus a new orchid species from southern Colombia

Czech Academy of Sciences Publication Activity Database

Kolanowska, Marta; Baranow, P.; Rykaczewski, M.

2017-01-01

Roč. 164, č. 2 (2017), s. 155-158 ISSN 2381-8107 R&D Projects: GA ČR GB14-36098G Institutional support: RVO:86652079 Keywords : Andean orchids * neotropics * biodiversity * new species * Putumayo Subject RIV: EF - Botanics OBOR OECD: Plant sciences, botany

RAPD analysis of colchicine induced variation of the Dendrobium ...

African Journals Online (AJOL)

STORAGESEVER

2009-04-20

Apr 20, 2009 ... species of the Dendrobium genera, and 13 orchids across generas. ... to detect variations at species level and among somaclonal variants in this study. ..... alternative for colchicines in in vitro choromosome doubling of Lilium.

Responses of Dendrobium 'darrenn glory' and Mokara 'calypso jumbo' orchids to 1-methylcyclopropene and aqueous ozone postharvest treatments

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Parviz Almasi

2015-01-01

Full Text Available AbstractOrchids possess a very special place amongst ornamental plants. But high ethylene sensitivity and early flower senescence of orchid result in a short vase life and rapid quality deterioration which is of great concern for the growers, traders and consumers. An attempt was made to study the influence of 1-methylcyclopropene (1-MCP (0 and 300 nL L–1 and аquеous ozone (0 and 5.2 nL L–1 in prolonging vase life and maintaining quality of two cut orchid hybrids Dendrobium 'Darren Glory' (DDG and Mokara “Calypso Jumbo” (MCJ. Results showed that orchid hybrids exhibited differences in their ethylene sensitivity, vase life, 1-aminocyclopropane-1-carboxylic acid (ACC content and ACC oxidase activities. Pre-treatment with 1-MCP resulted in reduced ethylene production, vase life, ACC content and ACC oxidase activities, but increased bud opening %. Pre-treatment with аquеous ozone failed to influence all those parameters except bud opening %. Interaction effects of hybrid and 1-MCP were significant for ethylene production, hybrid and ozone for vas life, 1-MCP and ozone for bud opening %, and hybrid, 1-MCP and ozone for ethylene production and vase life. Aqueous ozone markedly contributed to the inhibition of microbial growth in vase solution. Pre-treatment of the cut orchid flowers with 300 nL L–11-MCP, followed by using 5.2 mg L–1 aqueous ozone as the vase solution could be recommended to maintain quality and extend vase life of both the DDG and MCJ orchid hybrids.

A new locality of orchid Orchis purpurea Huds. in Cieszyn Foothills (Czech Republic

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Beczała Tomasz

2016-03-01

Full Text Available Orchis purpurea Huds. is protected species both in the Czech Republic and Poland. In 2014 a new locality was found in Kojkovice (district Třinec in the Cieszyn Foothils near border with Poland. The only one blooming individual was observed in 2014 and 2015 but it was accompanied by other 6 orchid species, that were much more abundant, as: Orchis pallens, Orchis mascula subsp. signifera, Listera ovata, Platanthera bifolia, Cephalanthera damasonium, Neottia nidus-avis. The Kojkovice forest deserves to be protected area due to abundant occurrence of many orchids.

Lack of S-RNase-Based Gametophytic Self-Incompatibility in Orchids Suggests That This System Evolved after the Monocot-Eudicot Split

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Shan-Ce Niu

2017-06-01

Full Text Available Self-incompatibility (SI is found in approximately 40% of flowering plant species and at least 100 families. Although orchids belong to the largest angiosperm family, only 10% of orchid species present SI and have gametophytic SI (GSI. Furthermore, a majority (72% of Dendrobium species, which constitute one of the largest Orchidaceae genera, show SI and have GSI. However, nothing is known about the molecular mechanism of GSI. The S-determinants of GSI have been well characterized at the molecular level in Solanaceae, Rosaceae, and Plantaginaceae, which use an S-ribonuclease (S-RNase-based system. Here, we investigate the hypothesis that Orchidaceae uses a similar S-RNase to those described in Rosaceae, Solanaceae, and Plantaginaceae SI species. In this study, two SI species (Dendrobium longicornu and D. chrysanthum were identified using fluorescence microscopy. Then, the S-RNase- and SLF-interacting SKP1-like1 (SSK1-like genes present in their transcriptomes and the genomes of Phalaenopsis equestris, D. catenatum, Vanilla shenzhenica, and Apostasia shenzhenica were investigated. Sequence, phylogenetic, and tissue-specific expression analyses revealed that none of the genes identified was an S-determinant, suggesting that Orchidaceae might have a novel SI mechanism. The results also suggested that RNase-based GSI might have evolved after the split of monocotyledons (monocots and dicotyledons (dicots but before the split of Asteridae and Rosidae. This is also the first study to investigate S-RNase-based GSI in monocots. However, studies on gene identification, differential expression, and segregation analyses in controlled crosses are needed to further evaluate the genes with high expression levels in GSI tissues.

The orchid-bee faunas (Hymenoptera: Apidae of two Atlantic Forest remnants in southern Bahia, eastern Brazil

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A Nemésio

Full Text Available The orchid-bee faunas of the ‘Parque Nacional do Pau Brasil’ (8,500 ha and ‘RPPN Estação Veracel’ (6,000 ha, two Atlantic Forest remnants in the southern state of Bahia, northeastern Brazil, were surveyed. Seventeen chemical compounds were used as scent baits to attract orchid-bee males. Seven hundred and twelve males belonging to 20 species were actively collected with insect nets during 80 hours in February and April, 2009. Euglossa marianae Nemésio, 2011, the most sensitive orchid-bee species of the Atlantic Forest, was recorded at both preserves, though in low abundance. ‘RPPN Estação Veracel’ is the smallest forest patch where Euglossa marianae has ever been recorded.

Genera of phytopathogenic fungi

NARCIS (Netherlands)

Marin-Felix, Y.; Hernández-Restrepo, Margarita; Wingfield, M.J.; Akulov, A.; Carnegie, A.J.; Cheewangkoon, R.; Gramaje, D.; Groenewald, J.Z.; Guarnaccia, V.; Halleen, F.; Lombard, L.; Luangsa-ard, J.; Marincowitz, S.; Moslemi, A.; Mostert, L.; Quaedvlieg, W.; Schumacher, R.K.; Spies, C.F.J.; Thangavel, R.; Taylor, P.W.J.; Wilson, A.M.; Wingfield, B.D.; Wood, A.R.; Crous, P.W.

2019-01-01

This paper represents the second contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information regarding the pathology, distribution, hosts and disease symptoms for the treated genera. In addition, primary and secondary DNA

An annotated checklist of the orchids of Nepal

Czech Academy of Sciences Publication Activity Database

Rokaya, Maan Bahadur; Raskoti, B. B.; Timsina, Binu; Münzbergová, Zuzana

2013-01-01

Roč. 31, č. 5 (2013), s. 511-550 ISSN 0107-055X R&D Projects: GA ČR GA526/09/0549 Institutional research plan: CEZ:AV0Z6005908 Institutional support: RVO:67985939 ; RVO:67179843 Keywords : orchids * checklist * Nepal Subject RIV: EF - Botanics; EH - Ecology, Behaviour (UEK-B) Impact factor: 0.844, year: 2013

Estimating the extent and structure of trade in horticultural orchids via social media.

Science.gov (United States)

Hinsley, Amy; Lee, Tamsin E; Harrison, Joseph R; Roberts, David L

2016-10-01

The wildlife trade is a lucrative industry involving thousands of animal and plant species. The increasing use of the internet for both legal and illegal wildlife trade is well documented, but there is evidence that trade may be emerging on new online technologies such as social media. Using the orchid trade as a case study, we conducted the first systematic survey of wildlife trade on an international social-media website. We focused on themed forums (groups), where people with similar interests can interact by uploading images or text (posts) that are visible to other group members. We used social-network analysis to examine the ties between 150 of these orchid-themed groups to determine the structure of the network. We found 4 communities of closely linked groups based around shared language. Most trade occurred in a community that consisted of English-speaking and Southeast Asian groups. In addition to the network analysis, we randomly sampled 30 groups from the whole network to assess the prevalence of trade in cultivated and wild plants. Of 55,805 posts recorded over 12 weeks, 8.9% contained plants for sale, and 22-46% of these posts pertained to wild-collected orchids. Although total numbers of posts about trade were relatively small, the large proportion of posts advertising wild orchids for sale supports calls for better monitoring of social media for trade in wild-collected plants. © 2016 The Authors. Conservation Biology published by Wiley Periodicals, Inc. on behalf of Society for Conservation Biology.

Chelonistele laetitia-reginae, a new orchid species from Sarawak

NARCIS (Netherlands)

Vogel, de E.F.

1996-01-01

The revision of the genus Chelonistele in Orchid Monographs 1 (1986) 23-40 lists 11 species and 4 variations. All occur in Borneo, which is evidently the centre of speciation of this genus; only Chelonistele sulphurea var. sulphurea occurs in addition in Java, Sumatra and the Malay Peninsula. During

DOFT and DOFTIP1 affect reproductive development in the orchid Dendrobium Chao Praya Smile.

Science.gov (United States)

Wang, Yanwen; Liu, Lu; Song, Shiyong; Li, Yan; Shen, Lisha; Yu, Hao

2017-12-16

FLOWERING LOCUS T (FT) in Arabidopsis encodes the florigen that moves from leaves to the shoot apical meristem to induce flowering, and this is partly mediated by FT-INTERACTING PROTEIN 1 (FTIP1). Although FT orthologs have been identified in some flowering plants, their endogenous roles in Orchidaceae, which is one of the largest families of flowering plants, are still largely unknown. In this study, we show that DOFT and DOFTIP1, the orchid orthologs of FT and FTIP1, respectively, play important roles in promoting flowering in the orchid Dendrobium Chao Praya Smile. Expression of DOFT and DOFTIP1 increases in whole plantlets during the transition from vegetative to reproductive development. Both transcripts are present in significant levels in reproductive organs, including inflorescence apices, stems, floral buds, and open flowers. Through successful generation of transgenic orchids, we have revealed that overexpression or down-regulation of DOFT accelerates or delays flowering, respectively, while alteration of DOFT expression also greatly affects pseudobulb formation and flower development. In common with their counterparts in Arabidopsis and rice, DOFTIP1 interacts with DOFT and affects flowering time in orchids. Our results suggest that while DOFT and DOFTIP1 play evolutionarily conserved roles in promoting flowering, DOFT may have evolved with hitherto unknown functions pertaining to the regulation of storage organs and flower development in the Orchidaceae family. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

NIR-assisted orchid virus therapy using urchin bimetallic nanomaterials in phalaenopsis

International Nuclear Information System (INIS)

Chen, Shin-Yu; Do, Yi-Yin; Huang, Pung-Ling; Cheng, Liang-Chien; Chen, Chieh-Wei; Lee, Po-Han; Liu, Ru-Shi; Yu, Fengjiao; Zhou, Wuzong

2013-01-01

The use of nanoparticles has drawn special attention, particularly in the treatment of plant diseases. Cymbidium mosaic virus (CymMV) and Odontoglossum ring spot virus (ORSV) are the most prevalent and serious diseases that affect the development of the orchid industry. In this study we treated nanoparticles as a strategy for enhancing the resistance of orchids against CymMV and ORSV. After chitosan-modified gold nanoparticles (Au NPs) were injected into Phalaenopsis leaves, the injected leaves were exposed to 980 nm laser for light–heat conversion. To evaluate virus elimination in the treated Phalaenopsis leaves, the transcripts of coat protein genes and the production of viral proteins were assessed by reverse transcription-Polymerase chain reaction and enzyme-linked immunosorbent assay, respectively. The expression of coat protein genes for both CymMV and ORSV was significantly lower in the chitosan-modified Au NP-treated Phalaenopsis leaves than in the control. Similarly, the amount of coat proteins for both viruses in the Phalaenopsis leaves was lower than that in the control (without nanoparticle injection). We propose that the temperature increase in the chitosan-modified Au NP-treated Phalaenopsis tissues after laser exposure reduces the viral population, consequently conferring resistance against CymMV and ORSV. Our findings suggest that the application of chitosan-modified Au NPs is a promising new strategy for orchid virus therapy. (paper)

DNA remodelling by Strict Partial Endoreplication in orchids, an original process in the plant kingdom.

Science.gov (United States)

Brown, Spencer C; Bourge, Mickaël; Maunoury, Nicolas; Wong, Maurice; Bianchi, Michele Wolfe; Lepers-Andrzejewski, Sandra; Besse, Pascale; Siljak-Yakovlev, Sonja; Dron, Michel; Satiat-Jeunemaître, Béatrice

2017-04-13

DNA remodelling during endoreplication appears to be a strong developmental characteristic in orchids. In this study, we analysed DNA content and nuclei in 41 species of orchids to further map the genome evolution in this plant family. We demonstrate that the DNA remodelling observed in 36 out of 41 orchids studied corresponds to strict partial endoreplication. Such process is developmentally regulated in each wild species studied. Cytometry data analyses allowed us to propose a model where nuclear states 2C, 4E, 8E, etc. form a series comprising a fixed proportion, the euploid genome 2C, plus 2 to 32 additional copies of a complementary part of the genome. The fixed proportion ranged from 89% of the genome in Vanilla mexicana down to 19% in V. pompona, the lowest value for all 148 orchids reported. Insterspecific hybridisation did not suppress this phenomenon. Interestingly, this process was not observed in mass-produced epiphytes. Nucleolar volumes grow with the number of endocopies present, coherent with high transcription activity in endoreplicated nuclei. Our analyses suggest species-specific chromatin rearrangement. Towards understanding endoreplication, V. planifolia constitutes a tractable system for isolating the genomic sequences that confer an advantage via endoreplication from those that apparently suffice at diploid level. © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Effects of Melatonin on Colchicine-Treated PLBs of Dendrobium sonia-28 Orchid.

Science.gov (United States)

Lim, M S; Antony, J J J; Islam, S M Shahinul; Suhana, Z; Sreeramanan, S

2017-01-01

Dendrobium hybrid orchid is popular in orchid commercial industry due to its short life cycle and ability to produce various types of flower colours. This study was conducted to identify the morphological, biochemical and scanning electron microscopy (SEM) analysis in the Dendrobium sonia-28 orchid plants. In this study, 0.05 and 0.075 % of colchicine-treated Dendrobium sonia-28 (4-week-old culture) protocorm-like bodies (PLBs) were treated in different concentrations of melatonin (MEL) posttreatments (0, 0.05, 0.1, 0.5, 1, 5 and 10 μM). Morphological parameters such as number of shoots, growth index and number of PLBs were determined. In the 0.05 and 0.075 % of colchicine-treated PLBs which were posttreated with 0.05 μM MEL resulted in the highest value of the morphological parameters tested based on the number of shoots (84.5 and 96.67), growth index (16.94 and 12.15) and number of PLBs (126.5 and 162.33), respectively. SEM analysis of the 0.05 μM MEL posttreatment on both the colchicine-treated regenerated PLBs showed irregular cell lineages, and some damages occurred on the stomata. This condition might be due to the effect of plasmolyzing occurred in the cell causing irregular cell lineages.

A Dual Repeat Cis-Element Determines Expression of GERANYL DIPHOSPHATE SYNTHASE for Monoterpene Production in Phalaenopsis Orchids

Directory of Open Access Journals (Sweden)

Yu-Chen Chuang

2018-06-01

Full Text Available Phalaenopsis bellina is a scented orchid emitting large amount of monoterpenes. GERANYL DIPHOSPHATE SYNTHASE (PbGDPS is the key enzyme for monoterpene biosynthesis, and shows concomitant expression with the emission of monoterpenes during flower development in P. bellina. Here, we identified a dual repeat cis-element in the GDPS promoter that is critical for monoterpene biosynthesis in Phalaenopsis orchids. A strong correlation between the dual repeat and the monoterpene production was revealed by examination of the GDPS promoter fragments over 12 Phalaenopsis species. Serial-deletion of the 2-kb GDPS promoter fragments demonstrated that the integrity of the dual repeat was crucial for its promoter activities. By screening the Arabidopsis transcription factors (TFs cDNA library using yeast one-hybrid assay, AtbZIP18, a member of group I of bZIP TFs, was identified to be able to bind the dual repeat. We then identified PbbZIP4 in the transcriptome of P. bellina, showing 83% identity in the DNA binding region with that of AtbZIP18, and the expression level of PbbZIP4 was higher in the scented orchids. In addition, PbbZIP4 transactivated the GDPS promoter fragment containing the dual repeat in dual luciferase assay. Furthermore, transient ectopic expression of PbbZIP4 induced a 10-fold production of monoterpenoids in the scentless orchid. In conclusion, these results indicate that the dual repeat is a real TF-bound cis-element significant for GDPS gene expression, and thus subsequent monoterpene biosynthesis in the scented Phalaenopsis orchids.

Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.

Science.gov (United States)

Fochi, Valeria; Chitarra, Walter; Kohler, Annegret; Voyron, Samuele; Singan, Vasanth R; Lindquist, Erika A; Barry, Kerrie W; Girlanda, Mariangela; Grigoriev, Igor V; Martin, Francis; Balestrini, Raffaella; Perotto, Silvia

2017-01-01

Orchids are highly dependent on their mycorrhizal fungal partners for nutrient supply, especially during early developmental stages. In addition to organic carbon, nitrogen (N) is probably a major nutrient transferred to the plant because orchid tissues are highly N-enriched. We know almost nothing about the N form preferentially transferred to the plant or about the key molecular determinants required for N uptake and transfer. We identified, in the genome of the orchid mycorrhizal fungus Tulasnella calospora, two functional ammonium transporters and several amino acid transporters but found no evidence of a nitrate assimilation system, in agreement with the N preference of the free-living mycelium grown on different N sources. Differential expression in symbiosis of a repertoire of fungal and plant genes involved in the transport and metabolism of N compounds suggested that organic N may be the main form transferred to the orchid host and that ammonium is taken up by the intracellular fungus from the apoplatic symbiotic interface. This is the first study addressing the genetic determinants of N uptake and transport in orchid mycorrhizas, and provides a model for nutrient exchanges at the symbiotic interface, which may guide future experiments. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Germination failure is not a critical stage of reproductive isolation between three congeneric orchid species.

Science.gov (United States)

De Hert, Koen; Honnay, Olivier; Jacquemyn, Hans

2012-11-01

In food-deceptive orchid species, postmating reproductive barriers (fruit set and embryo mortality) have been shown to be more important for reproductive isolation than premating barriers (pollinator isolation). However, currently there is very little knowledge about whether germination failure acts as a reproductive barrier in hybridizing orchid species. In this study, we investigated germination and protocorm development of pure and hybrid seeds of three species of the orchid genus Dactylorhiza. To test the hypothesis that germination failure contributed to total reproductive isolation, reproductive barriers based on germination were combined with already available data on early acting barriers (fruit set and embryo mortality) to calculate the relative and absolute contributions of these barriers to reproductive isolation. Protocorms were formed in all crosses, indicating that both hybrid and pure seeds were able to germinate and grow into protocorms. Also, the number of protocorms per seed packet was not significantly different between hybrid and pure seeds. High fruit set, high seed viability, and substantial seed germination resulted in very low reproductive isolation (average RI = 0.05). In two of six interspecific crosses, hybrids performed even better than the intraspecific crosses. Very weak postmating reproductive barriers were observed between our study species and may explain the frequent occurrence of first-generation hybrids in mixed Dactylorhiza populations. Germination failure, which is regarded as one of the most important bottlenecks in the orchid life cycle, was not important for reproductive isolation.

Effect of floral display on reproductive success in terrestrial orchids

Czech Academy of Sciences Publication Activity Database

Kindlmann, Pavel; Jersáková, Jana

2006-01-01

Roč. 41, - (2006), s. 47-60 ISSN 0015-5551 R&D Projects: GA AV ČR(CZ) KJB6141302; GA ČR(CZ) GA206/00/1124 Keywords : deceptivity * floral display * orchid * reproductive success * reward Subject RIV: EF - Botanics Impact factor: 1.033, year: 2005

Organic Additives Improves the in Vitro Growth of Native Orchid Vanda helvola Blume

Directory of Open Access Journals (Sweden)

Devina DAVID

2015-06-01

Full Text Available In vitro seed germination has been proven to be the most efficient technique to propagate orchid. The application of this aseptic technique has contributed to conservation of many endangered orchid species. In this study, undehisced capsules of Vanda helvola Blume were collected from Orchid Conservation Centre in Lagud Sebrang Agriculture Park, after 120 days from hand pollination and aseptically cultured on three types of basal media such as Murashige and Skoog (MS, Knudson C (KC and Vacin and Went (VW. After 90 days of culture, 66.40 ± 4.14% of seeds successfully germinated on KC medium. The effect of organic additives such as tomato juice, coconut water, peptone and yeast extract at different level of concentrations in KC basal medium were also tested on seed germination and seedling development of this native orchid. After 90 days of culture, over 90% of seeds were tremendously germinated on KC medium supplemented with 10% or 15% (v/v of tomato juice. The incorporation of peptone at 0.1% (w/v in KC basal media promoted rapid development of protocorm to seedling. Seedlings on this treatment produced an average of three leaves and two roots after 90 days of culture and were successfully acclimatized.

Distribution and abundance of the edible orchids of the southern ...

African Journals Online (AJOL)

... weeks in March 2002 in the Southern Regions of Tanzania (Iringa, Mbeya, Rukwa and Ruvuma) to study aspects of the extent of the distribution, diversity and density of edible orchids. Tools for identification included structured questionnaire, on-the-spot identification as well as using herbarium voucher samples and keys.

Identification and quantification of expression levels of three FRUITFULL-like MADS-box genes from the orchid Dendrobium thyrsiflorum (Reichb. f.)

DEFF Research Database (Denmark)

Skipper, Martin; Pedersen, Kim B.; Johansen, Louise Buchholt

2005-01-01

Orchids serve as useful model plants for the discovery and study of genes involved in novel processes in floral development because of their highly modified flowers. In this study three different FRUITFULL (FUL)-like MADS-box genes, DthyrFL1, -2, and -3 have been isolated from the orchid Dendrobium...

Isolamento e identificação de fungos micorrízicos rizoctonióides associados a três espécies de orquídeas epífitas neotropicais no Brasil Isolation and identification of rhizoctonia-like mycorrhizal fungi associated to three neotropical epiphytic orchid species in Brazil

Directory of Open Access Journals (Sweden)

Olinto Liparini Pereira

2005-04-01

and Bulbophyllum sp. from three different Atlantic rain forest fragments in Brazil. Taxonomic studies based on the nuclear condition, vegetative hyphal morphology and septal pore ultrastructure revealed that the isolates belong to the genera Ceratorhiza and Rhizoctonia. This is the first report on the isolation of mycorrhizal fungal species associated to the referred neotropical orchid species. Aspects concerning their taxonomy and use in the context of a native orchid conservation programs are discussed.

Intraspecific geographic variation of fragrances acquired by orchid bees in native and introduced populations.

Science.gov (United States)

Ramírez, Santiago R; Eltz, Thomas; Fritzsch, Falko; Pemberton, Robert; Pringle, Elizabeth G; Tsutsui, Neil D

2010-08-01

Male orchid bees collect volatiles, from both floral and non-floral sources, that they expose as pheromone analogues (perfumes) during courtship display. The chemical profile of these perfumes, which includes terpenes and aromatic compounds, is both species-specific and divergent among closely related lineages. Thus, fragrance composition is thought to play an important role in prezygotic reproductive isolation in euglossine bees. However, because orchid bees acquire fragrances entirely from exogenous sources, the chemical composition of male perfumes is prone to variation due to environmental heterogeneity across habitats. We used Gas Chromatography/Mass Spectrometry (GC/MS) to characterize the perfumes of 114 individuals of the green orchid bee (Euglossa aff. viridissima) sampled from five native populations in Mesoamerica and two naturalized populations in the southeastern United States. We recorded a total of 292 fragrance compounds from hind-leg extracts, and found that overall perfume composition was different for each population. We detected a pronounced chemical dissimilarity between native (Mesoamerica) and naturalized (U.S.) populations that was driven both by proportional differences of common compounds as well as the presence of a few chemicals unique to each population group. Despite these differences, our data also revealed remarkable qualitative consistency in the presence of several major fragrance compounds across distant populations from dissimilar habitats. In addition, we demonstrate that naturalized bees are attracted to and collect large quantities of triclopyr 2-butoxyethyl ester, the active ingredient of several commercially available herbicides. By comparing incidence values and consistency indices across populations, we identify putative functional compounds that may play an important role in courtship signaling in this species of orchid bee.

Inventory of orchids in Mount Tinombala Natural Reserve, Tolitoli Regency, Central Sulawesi

Directory of Open Access Journals (Sweden)

DYAN MEININGSASI SISWOYO PUTRI

2006-01-01

Full Text Available The aims of the research were to inventory the flora of Sulawesi, especially orchids in the Mount Tinombala Natural Reserve and to collect the plant materials for planting as a collection plants in Bali Botanical Garden. The method used in this research was explorative method at the place with altitude more than 700 m above sea level. The result of the research was 50 collection number of orchids which was consist of 72 specimens, 19 families and 24 species found in the Mount Tinombala Natural Reserve, Tolitoli Regency, Central Sulawesi. Two numbers of them that unidentified yet called as a genus dubious. Dendrobium and Eria were the genus that dominant in the natural reserve and one species that predicted as a new collection for the Bali Botanic Garden was Macodes petola Lindl.

Auxin is required for pollination-induced ovary growth in Dendrobium orchids

NARCIS (Netherlands)

Ketsa, S.; Wisutiamonkul, A.; Doorn, van W.G.

2006-01-01

In Dendrobium and other orchids the ovule becomes mature long after pollination, whereas the ovary starts growing within two days of pollination. The signalling pathway that induces rapid ovary growth after pollination has remained elusive. We placed the auxin antagonist ¿-(p-chlorophenoxy)

Elliptic genera from multi-centers

Energy Technology Data Exchange (ETDEWEB)

Gaddam, Nava [Institute for Theoretical Physics and Center for Extreme Matter and Emergent Phenomena,Utrecht University, 3508 TD Utrecht (Netherlands)

2016-05-13

I show how elliptic genera for various Calabi-Yau threefolds may be understood from supergravity localization using the quantization of the phase space of certain multi-center configurations. I present a simple procedure that allows for the enumeration of all multi-center configurations contributing to the polar sector of the elliptic genera — explicitly verifying this in the cases of the quintic in ℙ{sup 4}, the sextic in Wℙ{sub (2,1,1,1,1)}, the octic in Wℙ{sub (4,1,1,1,1)} and the dectic in Wℙ{sub (5,2,1,1,1)}. With an input of the corresponding ‘single-center’ indices (Donaldson-Thomas invariants), the polar terms have been known to determine the elliptic genera completely. I argue that this multi-center approach to the low-lying spectrum of the elliptic genera is a stepping stone towards an understanding of the exact microscopic states that contribute to supersymmetric single center black hole entropy in N=2 supergravity.

Sensitivity of Pigment Content of Banana and Orchid Tissue Culture Exposed to Extremely Low Frequency Electromagnetic Fiel

OpenAIRE

Prihatini, Riry; Saleh, Norihan Mohamad

2016-01-01

Natural exposure of extremely low frequency electromagnetic field (ELF-EMF) occurs in the environment and acts as one of the abiotic factors that affect the growth and development of organisms. This study was conducted to determine the effect of ELF-EMF on the tissue cultured banana and slipper orchid chlorophyll content as one of the indicators in measuring plant photosynthetic capacity. Four days old banana (Musa sp. cv. Berangan) corm and seven days old slipper orchid (Paphiopedilum rothsc...

Post harvest controlling of orchid thrips on cut flowers by irradiation

International Nuclear Information System (INIS)

Bansiddhi, K.; Siriphontangmun, S.

1999-01-01

Post-harvest controlling of orchid thrips, Thrips palmi Karny on cut flowers by irradiation was conducted during October 1992 to September 1997 at the Thai Irradiation Centre (TIC) and Division of Entomology and Zoology, Department of Agriculture, Thailand. The studies were carried out by conducting experiments on irradiation of cut flowers for controlling thrips with doses ranging from 0.1 to 1 kGy. The vase-life of radiated cut flowers was evaluated. Colonies of thrips were established in the laboratory in order to determine radiation sensitivity of various development stages of thrips and also to assess the occurrence of natural infestations by examining commercial market quality flowers from growers where management practices can be identified. Results from five years of research on post harvest control of thrips on orchids and cut flowers by irradiation showed that despite intensive investigation, difficulty in permanent establishment of a laboratory colony of Thrips palmi Karny for bioassays continued. The snap bean rearing method for rearing large number of thrips has bean developed, although it is less satisfactory than desirable. It has given sufficient numbers for testing in the 6th experiment. The maximum dose tolerated by Dendrobium orchid flowers at ambient temperature (25-30 deg. C) was below 0.5 kGy, but at a pre- and post irradiation temperature 15-18 deg. C, the maximum dose tolerated approached 0.75-0.8 kGy. The effective dose for control Thrips palmi Karny, however, was higher than 0.75 kGy. (author)

On mod 2 and higher elliptic genera

International Nuclear Information System (INIS)

Liu Kefeng

1992-01-01

In the first part of this paper, we construct mod 2 elliptic genera on manifolds of dimensions 8k+1, 8k+2 by mod 2 index formulas of Dirac operators. They are given by mod 2 modular forms or mod 2 automorphic functions. We also obtain an integral formula for the mod 2 index of the Dirac operator. As a by-product we find topological obstructions to group actions. In the second part, we construct higher elliptic genera and prove some of their rigidity properties under group actions. In the third part we write down characteristic series for all Witten genera by Jacobi theta-functions. The modular property and transformation formulas of elliptic genera then follow easily. We shall also prove that Krichever's genera, which come from integrable systems, can be written as indices of twisted Dirac operators for SU-manifolds. Some general discussions about elliptic genera are given. (orig.)

In vitro seed germination and seedling development of the orchid ...

African Journals Online (AJOL)

Gaurav

colourful-long lasting flowers, shinning green leaves and variously shaped pseudobulbs, they are very popular around the world. A total of 90 species of orchids ... ornamental plant in many gardens, nurseries, hotels, etc. Its medicinal value is due to paste of its pseudobulb which is applied to the forehead against headache ...

Extent and reasons for meadows in South Bohemia becoming unsuitable for orchids

Czech Academy of Sciences Publication Activity Database

Štípková, Z.; Kindlmann, Pavel

2015-01-01

Roč. 5, č. 2 (2015), s. 142-147 ISSN 1805-0174 R&D Projects: GA ČR GB14-36098G Institutional support: RVO:67179843 Keywords : extinction * meadows * terrestrial orchids * South Bohemia Subject RIV: EF - Botanics

Orchid woods and floating islands - the ecology of fly ash

Energy Technology Data Exchange (ETDEWEB)

Shaw, P. [Roehampton Institute, London (United Kingdom)

1994-02-01

The article reviews the ecology of disused pulverised fuel ash (PFA) from fossil-fuel power plants and suggests methods by which PFA can be used as a conservation resource. Plants which grow on weathered PFA are listed. They include mosses and orchids. PFA contains cenopheres which are hollow and buoyant, known as floaters. Those can accumulate as white scum on ash lagoons and can be colonised by aquatic plants which bind at the roots to form floating islands. Examples of sites where this has happened in the UK are given. Banks of PFA have provided resting place for sand martins and digging ground for badgers and foxes. PFA sites need careful management as floral succession progresses. The successional habitats on PFA and other industrial wastes are a declining ecosystem, owing to the advent of tougher waste-disposal legislation, banning the bad old ways of dumping and forgetting. Unless PFA areas start to be specifically created with conservation in mind, it is unlikely that the next generation will ever see orchid glades in a PFA woodland. 24 refs., 6 photos.

Plant and fungal gene expression in mycorrhizal protocorms of the orchid Serapias vomeracea colonized by Tulasnella calospora.

Science.gov (United States)

Balestrini, Raffaella; Nerva, Luca; Sillo, Fabiano; Girlanda, Mariangela; Perotto, Silvia

2014-01-01

Little is known on the molecular bases of plant-fungal interactions in orchid mycorrhiza. We developed a model system to investigate gene expression in mycorrhizal protocorms of Serapias vomeracea colonised by Tulasnella calospora. Our recent results with a small panel of genes as indicators of plant response to mycorrhizal colonization indicate that genes related with plant defense were not significantly up-regulated in mycorrhizal tissues. Here, we used laser microdissection to investigate whether expression of some orchid genes was restricted to specific cell types. Results showed that SvNod1, a S. vomeracea nodulin-like protein containing a plastocyanin-like domain, is expressed only in protocorm cells containing intracellular fungal hyphae. In addition, we investigated a family of fungal zinc metallopeptidases (M36). This gene family has expanded in the T. calospora genome and RNA-Seq experiments indicate that some members of the M36 metallopeptidases family are differentially regulated in orchid mycorrhizal protocorms.

First description of necrosis in leaves and pseudo-bulbs of Oncidium orchids caused by Burkholderia gladioli in São Paulo State, Brazil

Science.gov (United States)

A necrosis of orchid leaves and pseudobulbs was observed in a commercial orchid nursery in Mogi das Cruzes, Sao Paulo, Brazil. The symptoms were water-soaked, brown lesions that can develop into large areas of necrosis that extend throughout the entire plant, ultimately causing death. Bacteria were...

Native and exotic earthworms affect orchid seed loss

OpenAIRE

McCormick, Melissa K.; Parker, Kenneth L.; Szlavecz, Katalin; Whigham, Dennis F.

2013-01-01

Non-native earthworms have invaded ecosystems around the world but have recently received increased attention as they invaded previously earthworm-free habitats in northern North America. Earthworms can affect plants by ingesting seeds and burying them in the soil. These effects can be negative or positive but are expected to become increasingly negative with decreasing seed size. Orchids have some of the smallest seeds of any plants, so we hypothesized that earthworm consumption of seeds wou...

Symbiotic germination of three species of epiphytic orchids susceptible to genetic erosion, from Soconusco (Chiapas, Mexico

Directory of Open Access Journals (Sweden)

Vincenzo Bertolini

2012-02-01

Full Text Available The Soconusco region of southeast Mexico has almost a quarter of the orchid species registered in Mexico and 37 threatened species (NOM-059-SEMARNAT-2001, many with severely reduced and non-viable populations. We chose two of the most threatened species, Rossioglossum grande (Lindl. Garay and G. C. Kenn. and Cuitlauzina convallarioides (Schltr. Dressler and N. H. Williams and a rare species recently discovered in the region, Rhynchostele bictoniensis (Bateman Soto Arenas and Salazar, to study the mycorrhizal fungi associated with the roots, isolate them and use them to induce seed germination and promote development in asymbiotically produced protocorms, in the laboratory. We isolated ten strains of Rhizoctonia-like orchid mycorrhizal fungi from Rossioglossum grande and three from Cuitlauzina convallarioides. Using selected fungal strains from the same species, we tested for the promotion of further development of asymbiotically pre-germinated protocorms of R. grande and the promotion of seed germination of C. convallarioides. In the case of R. bictoniensis, we studied the effects on seed germination of nine strains of Rhizoctonia-like fungi isolated from other orchid species. For R. grande, after 10 months, one strain of Rhizoctonia promoted development of the pre-germinated protocorms, and almost 90% of the protocorms produced rhizoids. For C. convallarioides, after 3 months, one fungal strain promoted protocorm development to the stage where they produced green tissue under illumination, suggesting the onset of photosynthesis. For R. bictoniensis three of the fungal strains (from other orchid species promoted germination and, after 4 months, autotrophic protocorms.

An overview of the Phalaenopsis orchid genome through BAC end sequence analysis

Directory of Open Access Journals (Sweden)

Hsiao Yu-Yun

2011-01-01

Full Text Available Abstract Background Phalaenopsis orchids are popular floral crops, and development of new cultivars is economically important to floricultural industries worldwide. Analysis of orchid genes could facilitate orchid improvement. Bacterial artificial chromosome (BAC end sequences (BESs can provide the first glimpses into the sequence composition of a novel genome and can yield molecular markers for use in genetic mapping and breeding. Results We used two BAC libraries (constructed using the BamHI and HindIII restriction enzymes of Phalaenopsis equestris to generate pair-end sequences from 2,920 BAC clones (71.4% and 28.6% from the BamHI and HindIII libraries, respectively, at a success rate of 95.7%. A total of 5,535 BESs were generated, representing 4.5 Mb, or about 0.3% of the Phalaenopsis genome. The trimmed sequences ranged from 123 to 1,397 base pairs (bp in size, with an average edited read length of 821 bp. When these BESs were subjected to sequence homology searches, it was found that 641 (11.6% were predicted to represent protein-encoding regions, whereas 1,272 (23.0% contained repetitive DNA. Most of the repetitive DNA sequences were gypsy- and copia-like retrotransposons (41.9% and 12.8%, respectively, whereas only 10.8% were DNA transposons. Further, 950 potential simple sequence repeats (SSRs were discovered. Dinucleotides were the most abundant repeat motifs; AT/TA dimer repeats were the most frequent SSRs, representing 253 (26.6% of all identified SSRs. Microsynteny analysis revealed that more BESs mapped to the whole-genome sequences of poplar than to those of grape or Arabidopsis, and even fewer mapped to the rice genome. This work will facilitate analysis of the Phalaenopsis genome, and will help clarify similarities and differences in genome composition between orchids and other plant species. Conclusion Using BES analysis, we obtained an overview of the Phalaenopsis genome in terms of gene abundance, the presence of repetitive

Gene expression in mycorrhizal orchid protocorms suggests a friendly plant-fungus relationship.

Science.gov (United States)

Perotto, Silvia; Rodda, Marco; Benetti, Alex; Sillo, Fabiano; Ercole, Enrico; Rodda, Michele; Girlanda, Mariangela; Murat, Claude; Balestrini, Raffaella

2014-06-01

Orchids fully depend on symbiotic interactions with specific soil fungi for seed germination and early development. Germinated seeds give rise to a protocorm, a heterotrophic organ that acquires nutrients, including organic carbon, from the mycorrhizal partner. It has long been debated if this interaction is mutualistic or antagonistic. To investigate the molecular bases of the orchid response to mycorrhizal invasion, we developed a symbiotic in vitro system between Serapias vomeracea, a Mediterranean green meadow orchid, and the rhizoctonia-like fungus Tulasnella calospora. 454 pyrosequencing was used to generate an inventory of plant and fungal genes expressed in mycorrhizal protocorms, and plant genes could be reliably identified with a customized bioinformatic pipeline. A small panel of plant genes was selected and expression was assessed by real-time quantitative PCR in mycorrhizal and non-mycorrhizal protocorm tissues. Among these genes were some markers of mutualistic (e.g. nodulins) as well as antagonistic (e.g. pathogenesis-related and wound/stress-induced) genes. None of the pathogenesis or wound/stress-related genes were significantly up-regulated in mycorrhizal tissues, suggesting that fungal colonization does not trigger strong plant defence responses. In addition, the highest expression fold change in mycorrhizal tissues was found for a nodulin-like gene similar to the plastocyanin domain-containing ENOD55. Another nodulin-like gene significantly more expressed in the symbiotic tissues of mycorrhizal protocorms was similar to a sugar transporter of the SWEET family. Two genes coding for mannose-binding lectins were significantly up-regulated in the presence of the mycorrhizal fungus, but their role in the symbiosis is unclear.

Among the species of rare orchids found in abondance on the CERN Meyrin site is the bee-imitating "orphys apifera"

CERN Multimedia

1993-01-01

While many corners of the world are lamenting the disappearance of local flora and fauna, CERN is home to some of the rarest and most beautiful European orchids. While no simple explanation has been found for the orchid's proliferation - over 2000 were flowering in spring, estimated to be more than the total in the rest of Switzerland - they may benefit from growing in soil which is undisturbed by machines or chemicals.

Cell-specific expression of plant nutrient transporter genes in orchid mycorrhizae.

Science.gov (United States)

Fochi, Valeria; Falla, Nicole; Girlanda, Mariangela; Perotto, Silvia; Balestrini, Raffaella

2017-10-01

Orchid mycorrhizal protocorms and roots are heterogeneous structures composed of different plant cell-types, where cells colonized by intracellular fungal coils (the pelotons) are close to non-colonized plant cells. Moreover, the fungal coils undergo rapid turnover inside the colonized cells, so that plant cells containing coils at different developmental stages can be observed in the same tissue section. Here, we have investigated by laser microdissection (LMD) the localization of specific plant gene transcripts in different cell-type populations collected from mycorrhizal protocorms and roots of the Mediterranean orchid Serapias vomeracea colonized by Tulasnella calospora. RNAs extracted from the different cell-type populations have been used to study plant gene expression, focusing on genes potentially involved in N uptake and transport and previously identified as up-regulated in symbiotic protocorms. Results clearly showed that some plant N transporters are differentially expressed in cells containing fungal coils at different developmental stages, as well as in non-colonized cells, and allowed the identification of new functional markers associated to coil-containing cells. Copyright © 2017 Elsevier B.V. All rights reserved.

IN VITRO MICROPROPAGATION OF ORCHID Dendrobium heterocarpum Lindl. WITH DIFFERENT MEDIUM

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Yuli Setiawati

2015-03-01

Full Text Available Dendrobium heterocarpum Lindl. is one of the orchid species which is often seeked. It is because this species has a mystique appearance and special fragrance. The research aimed to observe the growth and developing responses of protocorm like bodies (PLBs of D. heterocarpum after 12 weeks in three different medium, i.e. Murashige and Skoog (MS, Kursor C and Western 3 (W3. The D. heterocarpum seeds were planted in MS, Kursor C and W3 medium. Qualitatively the orchid growth were observe including growth score and colour score. The result showed that growing time of MS was 4 weeks, a week faster than the growing time on Kursor C and W3 medium. The growing phase on MS medium and Kursor C medium reached phase 1 whereas on W3 medium reached phase 2. PLB’s colour after 12 weeks on MS medium reached phase E, strong yellowish green phase (142A. Meanwhile, on Kursor C and W3 was on phase D, moderate yellowish green (143D.

Possible chemical mimicry of the European lady’s slipper orchid (Cypripedium calceolus)

NARCIS (Netherlands)

Przybyłowicz, T.; Roessingh, P.; Groot, A.T.; Biesmeijer, J.C.; Oostermeijer, J.G.B.; Chittka, L.; Gravendeel, B.

2012-01-01

Pollination based on insect deception has been debated in the scientific community since it was first reported over two hundred years ago. A vast majority of deceptive syndromes occur within the orchid family. While many cheating flowers have been de- scribed and are well known, there are still many

In vitro growth of Brassocattleya orchid hybrid in different concentrations of KNO3, NH4NO3 and benzylaminopurine

OpenAIRE

Cardoso,Jean C; Ono,Elizabeth O

2011-01-01

One of the most important applications of plant tissue culture is mass propagation of ornamental plants. This experiment evaluated the effect of different concentrations of NH4NO3 and KNO3 and BAP on the in vitro growth of orchid hybrid Brassocattleya 'Pastoral'. Seedlings of this orchid hybrid were used as explants and cultivated in medium with mineral salts and vitamins from the MS medium (Murashige & Skoog, 1962), with the macronutrients P, Ca and Mg reduced by half, and with an additi...

Changes in orchid populations and endophytic fungi with rainfall and prescribed burning in Pterostylis revoluta in Victoria, Australia.

Science.gov (United States)

Jasinge, N U; Huynh, T; Lawrie, A C

2018-02-12

Wildfires are common in seasonally dry parts of the world with a Mediterranean climate. Prescribed burning is used to reduce fuel load and fire risk, but often without reliable information on its effects. This study investigated the effects of prescribed burns in different seasons on Pterostylis revoluta, an autumn-flowering Australian terrestrial orchid, and its orchid mycorrhizal fungi (OMFs) to find the least damaging season for a prescribed burn. Burns were conducted mid-season in spring and summer 2011 and autumn and winter 2012. Orchids were enumerated and measured during their flowering season in autumn 2011-2014 and mycorrhizal fungi were isolated before and after the burns in autumn 2011, 2012 and 2014. Micro-organisms isolated were characterized. DNA was extracted from the OMFs, and the internal transcribed spacer region was amplified by PCR. Amplicons were clustered by restriction fragment length polymorphism (RFLP), and representative amplicons were sequenced. OMF were tested for sensitivity to smoke water. The number of plants increased up to 4-fold and 90 % of plants became vegetative during this study. Isolation of mycorrhizal fungi increased and isolation of bacteria decreased. Before the burns, the main OMF isolated was unexpectedly Tulasnella calospora (Boud.) Juel. By 2014, after the burns, the expected Ceratobasidium sp. D.P. Rogers was the only OMF isolated in most burnt quadrats, whereas T. calospora was confined to a minority of unburnt 'control' and the 'spring burn' quadrats, which were also the only ones with flowering plants. The decline in rainfall during 2010-2012 probably caused the switch from mainly flowering to mainly vegetative plants and the change in OMFs. Burning in spring to summer was less damaging to this orchid than burning in autumn to winter, which should be noted by authorities in fire management plans for fire-prone areas in which this orchid occurs. © The Author(s) 2018. Published by Oxford University Press on behalf

Frequency of endophytic fungi isolated from Dendrobium crumenatum (Pigeon orchid and antimicrobial activity

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WIBOWO MANGUNWARDOYO

2012-01-01

Full Text Available Mangunwardoyo W, Suciatmih, Gandjar I. 2012. Frequency of endophytic fungi isolated from Dendrobium crumenatum (Pigeon orchid and antimicrobial activity. Biodiversitas 13: 34-39. The aims of this research was to isolate and study the frequency of endophytic fungi from roots, bulbous, stems, and leaves of Dendrobium crumenatum Sw. (pigeon orchid collected from Tanah Baru housing area, Bogor Botanical Garden, and Herbarium Bogoriense; and to assess for antimicrobial activity against Candida albicans ATCC 2091, Candida tropicalis LIPIMC 203, Escherichia coli ATCC 25922, Bacillus subtilis ATCC 6633 and Staphylococcus aureus ATCC 25923. Twelve species of endophytic fungi were identified from 60 samples obtained from D. crumenatum. Guignardia endophyllicola (anamorph: Phyllosticta capitalensis were the dominant endophytic fungi. Screening of the anti-microorganism activity of the endophytic fungi revealed that Fusarium nivale inhibited C albicans and C. tropicalis. All specimens did not inhibit B. subtilis, E. coli, and S. aureus.

Ionocidium ‘Cerrado 101’: intergeneric orchid hybrid with high quality of blooming

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Jean Carlos Cardoso

2017-10-01

Full Text Available Orchids are considered one of the most important potted-flowering in the world. Oncidium genus, as well their hybrids group (OHGs has used for the flower market as pot or cut flower.  However, some horticultural characteristics require improvements, e.g. the production of precocious cultivars, independent-season blooming or easy flowering induction, high quality and durability of flowers and variations in color of flowers, to compete with Phalaenopsis and Dendrobium orchids, as other flower groups. Aiming this purpose there were used hand-crossing pollination between the Oncidium ‘Sweet Sugar’ and Ionopsis utricularioides, a Brazilian wild species, for evaluate the capacity of crossing and to select progenies with interest of use in floriculture as new cultivar. The seeds obtained from this cross were seeded on in vitro conditions, followed by acclimatization and cultivation on greenhouse conditions until de flowering time. One of the plants obtained presented interesting characteristics, as good and rapid vegetative development and high quality of blooming. This hybrid obtained from an intergeneric crossing resulted in a plant with vegetative and flower type characteristics and color similar of Oncidium female parent, but with larger number of ramifications in inflorescence and number of flowers (60% and 219,4%, respectively than Oncidium parent (♀, and with more similarity with Ionopsis (♂. This hybrid cultivar, called Ionocidium ‘Cerrado 101’ is one more option of OHGs in this competitive market and can be used either for pot and also for cut orchid flowers production, main because it longer inflorescence (83 cm.

1-MCP pretreatment prevents bud and flower abscission in Dendrobium orchids

NARCIS (Netherlands)

Uthaichay, N.; Ketsa, S.; Doorn, van W.G.

2007-01-01

Dendrobium orchid inflorescences were treated for 4 h at 25 °C with or without 100¿500 nl/l 1-MCP and were then placed in water at 25 °C to follow abscission. In controls, depending on the experiment, 20¿80% of the floral buds and 0¿20% of the open flowers abscised within 1 week. The 1-MCP

The effects of planting media and leaf fertilizers on the growth of jamrud orchid (Dendrobium macrophyllum A. Rich.

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I GEDE TIRTA

2006-01-01

Full Text Available Jamrud orchid (Dendrobium macrophyllum A. Rich. have attractive flowers which make the orchid become one of high economic ornamental plants. The orchid is one of endangered species. Its growth is slow, however appropriate planting media and leaf fertilizers can improve the growth of the orchid. The experiment was conducted from February to June 2003, at “Eka Karya” Bali Botanic Garden. The design used in the experiment was completely randomized block with two treatments and four replicates. The first factor were six kinds of planting medias (roots of C. contaminans, roots of Asplenium nidus, charcoal, roots of C. contaminans+roots of A. nidus, roots of C. contaminans+charcoal and roots of A. nidus+charcoal. The second factor were four kinds of fertilizers (plant catalyst, super bionik, inabio and subur inti persada and one treatment without fertilizer. The results of experiment showed that the interaction between planting medias and leaf fertilizers significantly affected increment of plant height at 12, 14, 16 and 18 weeks after planting, of leaf number at 14, 16 and 18 weeks after planting, of root length, of plant fresh weight and oven dry weight. Treatment of C. contaminans roots and of A. nidus roots combined with inabio fertilizer produced the highest vegetative growth. This treatment increased the total oven dry weight of plant (54.81%, increased the weight of plant (67.48%, of root length (41.63%, of total leaf number (70.73%, of plant height (59.01% and bud number (72.22% compared with treatment without fertilizer in the same media.

Phylogenetic climatic niche conservatism and evolution of climatic suitability in Neotropical Angraecinae (Vandeae, Orchidaceae) and their closest African relatives.

Science.gov (United States)

Kolanowska, Marta; Grochocka, Elżbieta; Konowalik, Kamil

2017-01-01

In the present study we investigate the concept of phylogenetic niche conservatism (PNC) within the American species of angraecoid orchids ( Campylocentrum and Dendrophylax ) and their closest relatives in the Old World ( Angraecum ) using ecological niche modelling (ENM). The predicted niche occupancy profiles were matched with the outcomes of previous phylogenetic studies to reconstruct the evolution of climatic suitability within the orchid group studied and evaluate the role of niche differentiation in the speciation of Angraecinae. No correlation between preferred niches and taxonomic relationships within the orchid group studied was revealed. The climatic suitability of the majority of the species overlapped each other, either fully or partially. This pattern is also present in the species of other orchid genera. Our research confirms a significant level of PNC in Orchidaceae, even within taxa exhibiting a transatlantic disjunction. The analysis of the evolution of climatic suitability indicated that the adaptation to various climatic conditions is not a factor that has driven speciation within orchids studied.

Micropropagation of Phalaenopsis orchids via protocorms and protocorm-like bodies.

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Paek, Kee Yoeup; Hahn, Eun Joo; Park, So Young

2011-01-01

Phalaenopsis orchids have high economic value in the floriculture industry. Hybridization or cross-pollination in the breeding program have proven to be very reliable techniques for the production of a wide range of successful cultivars with attractive combinations of spray length, bud number, flower color and type, fragrance, seasonality, and compactness. In vitro propagation makes it possible to clonally mass propagate hybrids of commercial value and conserved species. However, in vitro culture technologies are still a challenge because of the slow growth of plantlets, low multiplication rate, poor rooting, and somaclonal variation. Although seed-raised plants can be used for conservation and breeding for the selection of superior features, genetic characteristics including seasonality, inflorescence, flower color, and type are not uniform. In this regard, micropropagation through protocorm-like bodies obtained from germinating embryos and somatic tissues is an important strategy in obtaining genetically stable plants and the improvement of quality. However, not all genotypes of Phalaenopsis respond to the same protocol under the same culture conditions and often result in the development of undesirable characteristics. In this chapter, plantlet production in Phalaenopsis orchids via the culture of protocorms from seeds and protocorm-like bodies from leaf sections and root tips are detailed.

Leaf arrangements are invalid in the taxonomy of orchid species

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Anna Jakubska-Busse

2017-07-01

Full Text Available The selection and validation of proper distinguishing characters are of crucial importance in taxonomic revisions. The modern classifications of orchids utilize the molecular tools, but still the selection and identification of the material used in these studies is for the most part related to general species morphology. One of the vegetative characters quoted in orchid manuals is leaf arrangement. However, phyllotactic diversity and ontogenetic changeability have not been analysed in detail in reference to particular taxonomic groups. Therefore, we evaluated the usefulness of leaf arrangements in the taxonomy of the genus Epipactis Zinn, 1757. Typical leaf arrangements in shoots of this genus are described as distichous or spiral. However, in the course of field research and screening of herbarium materials, we indisputably disproved the presence of distichous phyllotaxis in the species Epipactis purpurata Sm. and confirmed the spiral Fibonacci pattern as the dominant leaf arrangement. In addition, detailed analyses revealed the presence of atypical decussate phyllotaxis in this species, as well as demonstrated the ontogenetic formation of pseudowhorls. These findings confirm ontogenetic variability and plasticity in E. purpurata. Our results are discussed in the context of their significance in delimitations of complex taxa within the genus Epipactis.

Himantoglossum jankae (Orchidaceae: Orchideae), a new name for a long-misnamed lizard orchid

NARCIS (Netherlands)

Molnar, A.; Kreutz, C.A.J.; Ovari, M.; Sennikov, A.N.; Bateman, R.M.; Takacs, A.; Somlyay, L.; Sramko, G.

2012-01-01

A new name, Himantoglossum jankae, is given to the widely recognised lizard orchid species that is distributed primarily in the Balkan Peninsula and the northwestern region of Asia Minor and has been erroneously named H. caprinum in most previous literature. The new species differs from its closest

Orchid bees as bio-indicators for organic coffee farms in Costa Rica: does farm size affect their abundance?

Science.gov (United States)

Hedström, Ingemar; Denzel, Andrew; Owens, Gareth

2006-09-01

The potential of Euglossini bees, especially Euglossa, as biological indicators of organic vs nonorganic coffee farms was studied in Atenas and San Isidro, Alajuela, Costa Rica using 1.8-cineole as lure. Observations were made for three days at each of four farms and complemented with data from a year of observations. Orchid bees were in greater abundance in the organic farms (t-Student test). However, lower abundances suggest that an organic farm may be negatively affected by the proximity of non-organic farms, depending on its size and distance. Orchid bees may be indicators of organic coffee farms.

Responses to simulated nitrogen deposition by the neotropical epiphytic orchid Laelia speciosa

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Edison A. Díaz-Álvarez

2015-06-01

Full Text Available Potential ecophysiological responses to nitrogen deposition, which is considered to be one of the leading causes for global biodiversity loss, were studied for the endangered endemic Mexican epiphytic orchid, Laelia speciosa, via a shadehouse dose-response experiment (doses were 2.5, 5, 10, 20, 40, and 80 kg N ha−1 yr−1 in order to assess the potential risk facing this orchid given impending scenarios of nitrogen deposition. Lower doses of nitrogen of up to 20 kg N ha yr−1, the dose that led to optimal plant performance, acted as fertilizer. For instance, the production of leaves and pseudobulbs were respectively 35% and 36% greater for plants receiving 20 kg N ha yr−1 than under any other dose. Also, the chlorophyll content and quantum yield peaked at 0.66 ± 0.03 g m−2 and 0.85 ± 0.01, respectively, for plants growing under the optimum dose. In contrast, toxic effects were observed at the higher doses of 40 and 80 kg N ha yr−1. The δ13C for leaves averaged −14.7 ± 0.2‰ regardless of the nitrogen dose. In turn, δ15N decreased as the nitrogen dose increased from 0.9 ± 0.1‰ under 2.5 kg N ha−1yr−1 to −3.1 ± 0.2‰ under 80 kg N ha−1yr−1, indicating that orchids preferentially assimilate NH4+ rather than NO3− of the solution under higher doses of nitrogen. Laelia speciosa showed a clear response to inputs of nitrogen, thus, increasing rates of atmospheric nitrogen deposition can pose an important threat for this species.

Protocorms of an epiphytic orchid (Epidendrum amphistomum A. Richard recovered in situ, and subsequent identification of associated mycorrhizal fungi using molecular markers

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Lawrence W. Zettler

2012-02-01

Full Text Available Epiphytic orchids have received considerable study, yet little has been published on their germination requirements in situ involving mycorrhizal fungi. Such research has been hampered by the small, dust-like size of seeds and leafless seedlings (protocorms which are difficult to pinpoint on natural substrates, especially those on arboreal substrates (tree limbs. We report a novel seed sowing and retrieval method, modified from one applied to terrestrial orchids, used in the acquisition of epiphytic orchid protocorms from the Florida Panther National Wildlife Refuge. Seeds from two epiphytic orchid species (Epidendrum amphistomum A. Richard, E. nocturnum Jacquin were placed in separate nylon mesh packets secured within 35 mm plastic slide mounts, and affixed to tree bark using gutter mesh and a staple gun. To confirm that the embryos were viable, some seeds were also sown on asymbiotic media in the laboratory which subsequently germinated after 52 days incubation. Of 60 packets distributed among 18 tree limb sites, one packet – harboring seeds of E. amphistomum affixed to pop ash (Fraxinus caroliniana Mill. on a moss substrate – harbored protocorms after 267 days. Using molecular markers, a fungus assignable to the Ceratobasidiaceae, appears to be the mycorrhizal associate of these protocorms suggesting that this fungus may be associated with the germination process in situ.

Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini).

Science.gov (United States)

Brand, Philipp; Ramírez, Santiago R; Leese, Florian; Quezada-Euan, J Javier G; Tollrian, Ralph; Eltz, Thomas

2015-08-28

Insects rely more on chemical signals (semiochemicals) than on any other sensory modality to find, identify, and choose mates. In most insects, pheromone production is typically regulated through biosynthetic pathways, whereas pheromone sensory detection is controlled by the olfactory system. Orchid bees are exceptional in that their semiochemicals are not produced metabolically, but instead male bees collect odoriferous compounds (perfumes) from the environment and store them in specialized hind-leg pockets to subsequently expose during courtship display. Thus, the olfactory sensory system of orchid bees simultaneously controls male perfume traits (sender components) and female preferences (receiver components). This functional linkage increases the opportunities for parallel evolution of male traits and female preferences, particularly in response to genetic changes of chemosensory detection (e.g. Odorant Receptor genes). To identify whether shifts in pheromone composition among related lineages of orchid bees are associated with divergence in chemosensory genes of the olfactory periphery, we searched for patterns of divergent selection across the antennal transcriptomes of two recently diverged sibling species Euglossa dilemma and E. viridissima. We identified 3185 orthologous genes including 94 chemosensory loci from five different gene families (Odorant Receptors, Ionotropic Receptors, Gustatory Receptors, Odorant Binding Proteins, and Chemosensory Proteins). Our results revealed that orthologs with signatures of divergent selection between E. dilemma and E. viridissima were significantly enriched for chemosensory genes. Notably, elevated signals of divergent selection were almost exclusively observed among chemosensory receptors (i.e. Odorant Receptors). Our results suggest that rapid changes in the chemosensory gene family occurred among closely related species of orchid bees. These findings are consistent with the hypothesis that strong divergent selection

The impact on orchid species abundance of gathering their edible tubers by HIV/AIDS orphans : a case of three villages in the Southern Highlands of Tanzania

NARCIS (Netherlands)

Challe, J.F.X.; Struik, P.C.

2008-01-01

This paper examines the gathering of wild orchids and its effect on orchid species diversity and abundance in rural communities with high prevalence of HIV/AIDS and high numbers of orphans. The study was conducted in three villages in the Makete District of Tanzania. The study used a triangulation

Occurrence of cyanobacteria genera in the Vaal Dam: implications ...

African Journals Online (AJOL)

The occurrence of cyanobacteria genera in the Vaal Dam was analysed and the factors that influence its dominance in the particular reservoir were also investigated. The study was motivated by the effects of the secondary metabolites of cyanobacteria genera on potable water production. Cyanobacteria genera have been ...

Global warming not so harmful for all plants - response of holomycotrophic orchid species for the future climate change.

Science.gov (United States)

Kolanowska, Marta; Kras, Marta; Lipińska, Monika; Mystkowska, Katarzyna; Szlachetko, Dariusz L; Naczk, Aleksandra M

2017-10-05

Current and expected changes in global climate are major threat for biological diversity affecting individuals, communities and ecosystems. However, there is no general trend in the plants response to the climate change. The aim of present study was to evaluate impact of the future climate changes on the distribution of holomycotrophic orchid species using ecological niche modeling approach. Three different scenarios of future climate changes were tested to obtain the most comprehensive insight in the possible habitat loss of 16 holomycotrophic orchids. The extinction of Cephalanthera austiniae was predicted in all analyses. The coverage of suitable niches of Pogoniopsis schenckii will decrease to 1-30% of its current extent. The reduction of at least 50% of climatic niche of Erythrorchis cassythoides and Limodorum abortivum will be observed. In turn, the coverage of suitable niches of Hexalectris spicata, Uleiorchis ulaei and Wullschlaegelia calcarata may be even 16-74 times larger than in the present time. The conducted niche modeling and analysis of the similarity of their climatic tolerance showed instead that the future modification of the coverage of their suitable niches will not be unified and the future climate changes may be not so harmful for holomycotrophic orchids as expected.

Genera of phytopathogenic fungi: GOPHY 1

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Y. Marin-Felix

2017-03-01

Full Text Available Genera of Phytopathogenic Fungi (GOPHY is introduced as a new series of publications in order to provide a stable platform for the taxonomy of phytopathogenic fungi. This first paper focuses on 21 genera of phytopathogenic fungi: Bipolaris, Boeremia, Calonectria, Ceratocystis, Cladosporium, Colletotrichum, Coniella, Curvularia, Monilinia, Neofabraea, Neofusicoccum, Pilidium, Pleiochaeta, Plenodomus, Protostegia, Pseudopyricularia, Puccinia, Saccharata, Thyrostroma, Venturia and Wilsonomyces. For each genus, a morphological description and information about its pathology, distribution, hosts and disease symptoms are provided. In addition, this information is linked to primary and secondary DNA barcodes of the presently accepted species, and relevant literature. Moreover, several novelties are introduced, i.e. new genera, species and combinations, and neo-, lecto- and epitypes designated to provide a stable taxonomy. This first paper includes one new genus, 26 new species, ten new combinations, and four typifications of older names.

Restoring the rare Kentucky lady's slipper orchid to the Kisatchie National Forest

Science.gov (United States)

James P. Barnett; Kevin Allen; David Moore

2012-01-01

The Kentucky lady’s slipper (Cypripedium kentuckiense C.F. Reed [Orchidaceae]) is a spectacular orchid native to the southeastern US. Although its range includes much of the Southeast, it is rare due to loss of appropriate edaphic and climatic habitats. Efforts to restore this species to the Kisatchie National Forest in Louisiana were initiated by a high school student...

Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands

Czech Academy of Sciences Publication Activity Database

Oja, J.; Vahtra, J.; Bahram, M.; Kohout, Petr; Kull, T.; Rannap, R.; Köljalg, U.; Tedersoo, L.

2017-01-01

Roč. 27, č. 4 (2017), s. 355-367 ISSN 0940-6360 Institutional support: RVO:67985939 Keywords : mycorrhiza * orchids * fungal community composition * calcareous grassland * spatial distribution * grazing intensity Subject RIV: EF - Botanics OBOR OECD: Ecology Impact factor: 3.047, year: 2016

Radiosensitivity studies on the different stages and ages of orchid weevil, orchidophilus aterrimus (waterhouse)

International Nuclear Information System (INIS)

Manoto, E.C.; Obra, G.B.; Reyes, M.R.; Resilva, S.R.

1996-01-01

The effect of different radiation doses on the different stages and ages of orchid weevil, Orchidophilus aterrimus (Waterhouse) was investigated. Among the different stages, the egg was found the most sensitive while the adult weevil was the most resistant to gamma radiation. The younger the insect within a stage, the more sensitive they are to the lethal effect of radiation. For instance, one-to three-day-old eggs were found most sensitive followed by four-to seven-day-old eggs, two- to four-day-old and 30-day-old larvae and early pupae. Late pupae and adults were the most radioresistant when irradiated with doses ranging from 150 to 450 Gy. Furthermore, young adults treated with 150 to 460 Gy did not lay any eggs while mature adults lay a few eggs but none of them hatched. Our data indicate that gamma radiation may be used as an alternative quarantine treatment for disinfestation of orchids. (author)

Photoprotection related to xanthophyll cycle pigments in epiphytic orchids acclimated at different light microenvironments in two tropical dry forests of the Yucatan Peninsula, Mexico.

Science.gov (United States)

de la Rosa-Manzano, Edilia; Andrade, José Luis; García-Mendoza, Ernesto; Zotz, Gerhard; Reyes-García, Casandra

2015-12-01

Epiphytic orchids from dry forests of Yucatán show considerable photoprotective plasticity during the dry season, which depends on leaf morphology and host tree deciduousness. Nocturnal retention of antheraxanthin and zeaxanthin was detected for the first time in epiphytic orchids. In tropical dry forests, epiphytes experience dramatic changes in light intensity: photosynthetic photon flux density may be up to an order of magnitude higher in the dry season compared to the wet season. To address the seasonal changes of xanthophyll cycle (XC) pigments and photosynthesis that occur throughout the year, leaves of five epiphytic orchid species were studied during the early dry, dry and wet seasons in a deciduous and a semi-deciduous tropical forests at two vertical strata on the host trees (3.5 and 1.5 m height). Differences in XC pigment concentrations and photosynthesis (maximum quantum efficiency of photosystem II; F v/F m) were larger among seasons than between vertical strata in both forests. Antheraxanthin and zeaxanthin retention reflected the stressful conditions of the epiphytic microhabitat, and it is described here in epiphytes for the first time. During the dry season, both XC pigment concentrations and photosystem II heat dissipation of absorbed energy increased in orchids in the deciduous forest, while F v/F m and nocturnal acidification (ΔH(+)) decreased, clearly as a response to excessive light and drought. Concentrations of XC pigments were higher than those in orchids with similar leaf shape in semi-deciduous forest. There, only Encyclia nematocaulon and Lophiaris oerstedii showed somewhat reduced F v/F m. No changes in ΔH(+) and F v/F m were detected in Cohniella ascendens throughout the year. This species, which commonly grows in forests with less open canopies, showed leaf tilting that diminished light interception. Light conditions in the uppermost parts of the canopy probably limit the distribution of epiphytic orchids and the retention of

Orchid flowers tolerance to gamma-radiation

International Nuclear Information System (INIS)

Kikuchi, Olivia Kimiko

2000-01-01

Cut flowers are fresh goods that may be treated with fumigants such as methyl bromide to meet the needs of the quarantine requirements of importing countries. Irradiation is a non-chemical alternative to substitute the methyl bromide treatment of fresh products. In this research, different cut orchids were irradiated to examine their tolerance to gamma-rays. A 200 Gy dose did inhibit the Dendrobium palenopsis buds from opening, but did not cause visible damage to opened flowers. Doses of 800 and 1000 Gy were damaging because they provoked the flowers to drop from the stem. Cattleya irradiated with 750 Gy did not show any damage, and were therefore eligible for the radiation treatment. Cymbidium tolerated up to 300 Gy and above this dose dropped prematurely. On the other hand, Oncydium did not tolerate doses above 150 Gy.(author)

Orchid flowers tolerance to gamma-radiation

Energy Technology Data Exchange (ETDEWEB)

Kikuchi, Olivia Kimiko E-mail: okikuchi@net.ipen.br

2000-03-01

Cut flowers are fresh goods that may be treated with fumigants such as methyl bromide to meet the needs of the quarantine requirements of importing countries. Irradiation is a non-chemical alternative to substitute the methyl bromide treatment of fresh products. In this research, different cut orchids were irradiated to examine their tolerance to gamma-rays. A 200 Gy dose did inhibit the Dendrobium palenopsis buds from opening, but did not cause visible damage to opened flowers. Doses of 800 and 1000 Gy were damaging because they provoked the flowers to drop from the stem. Cattleya irradiated with 750 Gy did not show any damage, and were therefore eligible for the radiation treatment. Cymbidium tolerated up to 300 Gy and above this dose dropped prematurely. On the other hand, Oncydium did not tolerate doses above 150 Gy.(author)

Orchids mimic green-leaf volatiles to attract prey-hunting wasps for pollination.

Science.gov (United States)

Brodmann, Jennifer; Twele, Robert; Francke, Wittko; Hölzler, Gerald; Zhang, Qing-He; Ayasse, Manfred

2008-05-20

An outstanding feature of orchids is the diversity of their pollination systems [1]. Most remarkable are those species that employ chemical deceit for the attraction of pollinators [2]. The orchid Epipactis helleborine is a typical wasp flower, exhibiting physiological and morphological adaptations for the attraction of pollinating social wasps [3]. As noted by Darwin [1], this species is almost entirely overlooked by other potential pollinators, despite a large nectar reward. Therefore, the mechanism for the attraction of pollinating social wasps was something of a mystery. By using a combination of behavioral experiments, electrophysiological investigations, and chemical analyses, we demonstrate for the first time that the flowers of E. helleborine and E. purpurata emit green-leaf volatiles (GLVs), which are attractive to foragers of the social wasps Vespula germanica and V. vulgaris. GLVs, emitted by damaged plant tissues, are known to guide parasitic wasps to their hosts [4]. Several E. helleborine GLVs that induced response in the antennae of wasps were also emitted by cabbage leaves infested with caterpillars (Pieris brassicae), which are common prey items for wasps [5]. This is the first example in which GLVs have been implicated in chemical mimicry for the attraction of pollinating insects.

Comparative Proteomics Analyses of Pollination Response in Endangered Orchid Species Dendrobium Chrysanthum

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Wei Wang

2017-11-01

Full Text Available Pollination is a crucial stage in plant reproductive process. The self-compatibility (SC and self-incompatibility (SI mechanisms determined the plant genetic diversity and species survival. D. chrysanthum is a highly valued ornamental and traditional herbal orchid in Asia but has been declared endangered. The sexual reproduction in D. chrysanthum relies on the compatibility of pollination. To provide a better understanding of the mechanism of pollination, the differentially expressed proteins (DEP between the self-pollination (SP and cross-pollination (CP pistil of D. chrysanthum were investigated using proteomic approaches—two-dimensional electrophoresis (2-DE coupled with tandem mass spectrometry technique. A total of 54 DEP spots were identified in the two-dimensional electrophoresis (2-DE maps between the SP and CP. Gene ontology analysis revealed an array of proteins belonging to following different functional categories: metabolic process (8.94%, response to stimulus (5.69%, biosynthetic process (4.07%, protein folding (3.25% and transport (3.25%. Identification of these DEPs at the early response stage of pollination will hopefully provide new insights in the mechanism of pollination response and help for the conservation of the orchid species.

Investigation of the effects of monochromatic lights combination on Phalaenopsis orchid and chrysanthemum in vitro plant growth

International Nuclear Information System (INIS)

Le Tien Thanh; Nguyen Tuong Mien; Huynh Thi Trung; Vu Thi Trac; Pham Van Nhi

2016-01-01

Eleven independent monochromatic light combination systems were established using super blue and red light LEDs. These are adjustable for mixing ratio of red and blue lights, the intensity and time for illumination. A fluorescent light illumination system was included as control. These were used to implement experiments for investigation effects of monochromatic lights combination in in vitro plantlet fully-forming stage on in vitro plantlet fully-forming and on the development of plant in nursery of chrysanthemum and Phalaenopsis orchid. Results from these experiments showed that illumination with intensity of 750 lx and light mixture of 20% blue-80% red is suitable for Phalaenopsis orchid; illumination with intensity of 1100 lx and light mixture of 90% red light-10% blue light is suitable for chrysanthemum. (author)

Genetic affinities between the Yami tribe people of Orchid Island and the Philippine Islanders of the Batanes archipelago

Science.gov (United States)

2011-01-01

Background Yami and Ivatan islanders are Austronesian speakers from Orchid Island and the Batanes archipelago that are located between Taiwan and the Philippines. The paternal genealogies of the Yami tribe from 1962 monograph of Wei and Liu were compared with our dataset of non-recombining Y (NRY) chromosomes from the corresponding families. Then mitochondrial DNA polymorphism was also analyzed to determine the matrilineal relationships between Yami, Ivatan, and other East Asian populations. Results The family relationships inferred from the NRY Phylogeny suggested a low number of paternal founders and agreed with the genealogy of Wei and Liu (P Philippine people was closer than that between Yami and Ivatan, suggesting that the Orchid islanders were colonized separately by their nearest neighbors and bred in isolation. However a northward gene flow to Orchid Island from the Philippines was suspected as Yami and Ivatan peoples both speak Western Malayo-Polynesian languages which are not spoken in Taiwan. Actually, only very little gene flow was observed between Yami and Ivatan or between Yami and the Philippines as indicated by the sharing of mtDNA haplogroup B4a1a4 and one O1a1* Y-STR lineage. Conclusions The NRY and mtDNA genetic information among Yami tribe peoples fitted well the patrilocal society model proposed by Wei and Liu. In this proposal, there were likely few genetic exchanges among Yami and the Philippine people. Trading activities may have contributed to the diffusion of Malayo-Polynesian languages among them. Finally, artifacts dating 4,000 YBP, found on Orchid Island and indicating association with the Out of Taiwan hypothesis might be related to a pioneering stage of settlement, as most dating estimates inferred from DNA variation in our data set ranged between 100-3,000 YBP. PMID:21281460

Overexpression of DOSOC1, an ortholog of Arabidopsis SOC1, promotes flowering in the orchid Dendrobium Chao Parya Smile.

Science.gov (United States)

Ding, Lihua; Wang, Yanwen; Yu, Hao

2013-04-01

SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1) encodes a MADS-box protein that plays an essential role in integrating multiple flowering signals to regulate the transition from vegetative to reproductive development in the model plant Arabidopsis. Although SOC1-like genes have been isolated in various angiosperms, its orthologs in Orchidaceae, one of the largest families of flowering plants, are so far unknown. To investigate the regulatory mechanisms of flowering time control in orchids, we isolated a SOC1-like gene, DOSOC1, from Dendrobium Chao Praya Smile. DOSOC1 was highly expressed in reproductive organs, including inflorescence apices, pedicels, floral buds and open flowers. Its expression significantly increased in whole plantlets during the transition from vegetative to reproductive development, which usually occurred after 8 weeks of culture in Dendrobium Chao Praya Smile. In the shoot apex at the floral transitional stage, DOSOC1 was particularly expressed in emerging floral meristems. Overexpression of DOSOC1 in wild-type Arabidopsis plants resulted in early flowering, which was coupled with the up-regulation of two other flowering promoters, AGAMOUS-LIKE 24 and LEAFY. In addition, overexpression of DOSOC1 was able partially to complement the late-flowering phenotype of Arabidopsis soc1-2 loss-of-function mutants. Furthermore, we successfully created seven 35S:DOSOC1 transgenic Dendrobium orchid lines, which consistently exhibited earlier flowering than wild-type orchids. Our results suggest that SOC1-like genes play an evolutionarily conserved role in promoting flowering in the Orchidaceae family, and that DOSOC1 isolated from Dendrobium Chao Praya Smile could serve as an important target for genetic manipulation of flowering time in orchids.

Partitioning of habitat effects casts light on the decline of the fen orchid, Liparis loeselii

DEFF Research Database (Denmark)

Andersen, Dagmar Kappel; Ejrnæs, Rasmus; Minter, Martine Olesen

2015-01-01

Liparis loeselii is a rare and declining orchid species restricted to rich fens in the northern hemisphere. Suggested reasons for the decline are habitat destruction, eutrophication, altered hydrology and scrub encroachment after termination of traditional management such as grazing and hay making...

Orchid bees as bio-indicators for organic coffee farms in Costa Rica: Does farm size affect their abundance?

Directory of Open Access Journals (Sweden)

Ingemar Hedström

2006-09-01

Full Text Available The potential of Euglossini bees, especially Euglossa, as biological indicators of organic vs non-organic coffee farms was studied in Atenas and San Isidro, Alajuela, Costa Rica using 1.8-cineole as lure. Observations were made for three days at each of four farms and complemented with data from a year of observations. Orchid bees were in greater abundance in the organic farms (t-Student test. However, lower abundances suggest that an organic farm may be negatively affected by the proximity of non-organic farms, depending on its size and distance. Orchid bees may be indicators of organic coffee farms. Rev. Biol. Trop. 54 (3: 965-969. Epub 2006 Sept. 29.

Positive selection and ancient duplications in the evolution of class B floral homeotic genes of orchids and grasses

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Koch Marcus A

2009-04-01

Full Text Available Abstract Background Positive selection is recognized as the prevalence of nonsynonymous over synonymous substitutions in a gene. Models of the functional evolution of duplicated genes consider neofunctionalization as key to the retention of paralogues. For instance, duplicate transcription factors are specifically retained in plant and animal genomes and both positive selection and transcriptional divergence appear to have played a role in their diversification. However, the relative impact of these two factors has not been systematically evaluated. Class B MADS-box genes, comprising DEF-like and GLO-like genes, encode developmental transcription factors essential for establishment of perianth and male organ identity in the flowers of angiosperms. Here, we contrast the role of positive selection and the known divergence in expression patterns of genes encoding class B-like MADS-box transcription factors from monocots, with emphasis on the family Orchidaceae and the order Poales. Although in the monocots these two groups are highly diverse and have a strongly canalized floral morphology, there is no information on the role of positive selection in the evolution of their distinctive flower morphologies. Published research shows that in Poales, class B-like genes are expressed in stamens and in lodicules, the perianth organs whose identity might also be specified by class B-like genes, like the identity of the inner tepals of their lily-like relatives. In orchids, however, the number and pattern of expression of class B-like genes have greatly diverged. Results The DEF-like genes from Orchidaceae form four well-supported, ancient clades of orthologues. In contrast, orchid GLO-like genes form a single clade of ancient orthologues and recent paralogues. DEF-like genes from orchid clade 2 (OMADS3-like genes are under less stringent purifying selection than the other orchid DEF-like and GLO-like genes. In comparison with orchids, purifying selection

Effects of fungicides and bactericides on orchid seed germination and shoot tip cultures in vitro

OpenAIRE

Brown, DM; Groom, CL; Cvitanik, M; Brown, M; Cooper, JL; Arditti, J

1981-01-01

Amphotericin B, benomyl, gentamycin, nystatin, quintozene penicillin G, sodium omadine, and vancomycin singly and in several combinations have no deleterious effects on the germination of orchid seeds, but inhibit the growth in vitro of shoot tip explants. © 1981 Martinus Nijhoff/Dr W. Junk Publishers.

The orchid-bee fauna (Hymenoptera: Apidae of ‘Reserva Biológica de Una’, a hotspot in the Atlantic Forest of southern Bahia, eastern Brazil

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A Nemésio

Full Text Available The orchid-bee fauna of ‘Reserva Biológica de Una’ (REBIO Una, one of the largest Atlantic Forest remnants in southern Bahia, eastern Brazil, was surveyed for the first time. Baits with sixteen different scents were used to attract males of orchid bees. Eight hundred and fifty-nine males belonging to 26 species were actively collected with insect nets during 60 hours in January and February, 2009, and January, 2010. Euglossa avicula Dressler, 1982 and Euglossa milenae Bembé, 2007 have been recorded for the first time in the state of Bahia. It was found that REBIO Una has one of the most diverse and rich orchid-bee faunas of the entire Atlantic Forest domain and holds some rare species, such as Euglossa cyanochloraMoure, 1996.

Six new genera of Braconidae (Hymenoptera) from China

NARCIS (Netherlands)

Achterberg, van C.; Chen, X.

2004-01-01

Six new genera of the family Braconidae (Hymenoptera) from China are described and illustrated: two genera of the subfamily Agathidinae: Facilagathis gen. nov. (type species: F. spinulata spec. nov.) and Cremnoptoides gen. nov. (type species: Cremnops pappi Sharkey, 1994); one genus of the subfamily

Zygospore ornamentation in the genera Mucor and Zygorhynchus

NARCIS (Netherlands)

Schipper, Maria A.A.; Samson, R.A.; Stalpers, J.A.

1975-01-01

Zygospores of species of the genera Mucor and Zygorhynchus were studied by means of scanning electron microscopy. The types of ornamentation are described and compared with those of some species of other genera of the Mucorales. The possibility of grouping the species according to zygospore

Notes on the Orchid Flora of Thailand (II

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Henrik Æ. Pedersen

2009-11-01

Full Text Available Three orchid species are newly recorded for the flora of Thailand. The discovery of Macodes petola in the southern part of Peninsular Thailand, adjacent to known occurrences across the Malaysian border, was expected. On the other hand, the find of Cheirostylis octodactyla in Thailand considerably extended the known range of this species to the west, as it was previously known only from the northern part of the Philippines, Taiwan and (through a single collection from northern Vietnam. The recent discovery of populations of Zeuxine bidupensis in Thailand suggests that this species, hitherto considered endemic to Vietnam, does not only have morphological, but also geographic affintities to the little known Z. pantlingii from West Bengal.

76 FR 78008 - Laboratory Corporation of America Holdings and Orchid Cellmark Inc.; Analysis of Proposed...

Science.gov (United States)

2011-12-15

... relevant equipment, books and records, and other information necessary for DDC to bid competitively for... requiring the parties to divest Orchid's U.S. government paternity testing business to DDC. LabCorp also must divest testing equipment along with contract and service information necessary to enable DDC to...

Synopsis of the vernacular names and the economic use of the indigenous orchids of Java

NARCIS (Netherlands)

Bakhuizen van den Brink, R.C.

1937-01-01

The Netherlands’ Indies are part of those humid tropical regions where innumerable species of orchids either may hang down, sometimes in large numbers, from the trunks and branches of trees and shrubs or grow terrestrially in woods or elsewhere. Nevertheless, to every naturalist who takes the

A garden of orchids: a generalized Harper equation at quadratic irrational frequencies

International Nuclear Information System (INIS)

Mestel, B D; Osbaldestin, A H

2004-01-01

We consider a generalized Harper equation at quadratic irrational flux, showing, in the strong coupling limit, the fluctuations of the exponentially decaying eigenfunctions are governed by the dynamics of a renormalization operator on a renormalization strange set. This work generalizes previous analyses which have considered only the golden mean case. Projections of the renormalization strange sets are illustrated analogous to the 'orchid' present in the golden mean case

A garden of orchids: a generalized Harper equation at quadratic irrational frequencies

Energy Technology Data Exchange (ETDEWEB)

Mestel, B D [Department of Computing Science and Mathematics, University of Stirling, Stirling FK9 4LA (United Kingdom); Osbaldestin, A H [Department of Mathematics, University of Portsmouth, Portsmouth PO1 3HE (United Kingdom)

2004-10-01

We consider a generalized Harper equation at quadratic irrational flux, showing, in the strong coupling limit, the fluctuations of the exponentially decaying eigenfunctions are governed by the dynamics of a renormalization operator on a renormalization strange set. This work generalizes previous analyses which have considered only the golden mean case. Projections of the renormalization strange sets are illustrated analogous to the 'orchid' present in the golden mean case.

Monitoring and Precision Spraying for Orchid Plantation with Wireless WebCAMs

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Grianggai Samseemoung

2017-10-01

Full Text Available Through processing images taken from wireless WebCAMs on the low altitude remote sensing (LARS platform, this research monitored crop growth, pest, and disease information in a dendrobium orchid’s plantation. Vegetetative indices were derived for distinguishing different stages of crop growth, and the infestation density of pests and diseases. Image data was processed through an algorithm created in MATLAB® (The MathWorks, Inc., Natick, USA. Corresponding to the orchid’s growth stage and its infestation density, varying levels of fertilizer and chemical injections were administered. The acquired LARS images from wireless WebCAMs were positioned using geo-referencing, and eventually processed to estimate vegetative-indices (Red = 650 nm and NIR = 800 nm band center. Good correlations and a clear cluster range were obtained in characteristic plots of the normalized difference vegetation index (NDVI and the green normalized difference vegetation index (GNDVI against chlorophyll content. The coefficient of determination, the chlorophyll content values (μmol m−2 showed significant differences among clusters for healthy orchids (R2 = 0.985–0.992, and for infested orchids (R2 = 0.984–0.998. The WebCAM application, while being inexpensive, provided acceptable inputs for image processing. The LARS platform gave its best performance at an altitude of 1.2 m above canopy. The image processing software based on LARS images provided satisfactory results as compared with manual measurements.

Functional Significance of Labellum Pattern Variation in a Sexually Deceptive Orchid (Ophrys heldreichii: Evidence of Individual Signature Learning Effects.

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Kerstin Stejskal

Full Text Available Mimicking female insects to attract male pollinators is an important strategy in sexually deceptive orchids of the genus Ophrys, and some species possess flowers with conspicuous labellum patterns. The function of the variation of the patterns remains unresolved, with suggestions that these enhance pollinator communication. We investigated the possible function of the labellum pattern in Ophrys heldreichii, an orchid species in which the conspicuous and complex labellum pattern contrasts with a dark background. The orchid is pollinated exclusively by males of the solitary bee, Eucera berlandi. Comparisons of labellum patterns revealed that patterns within inflorescences are more similar than those of other conspecific plants. Field observations showed that the males approach at a great speed and directly land on flowers, but after an unsuccessful copulation attempt, bees hover close and visually scan the labellum pattern for up to a minute. Learning experiments conducted with honeybees as an accessible model of bee vision demonstrated that labellum patterns of different plants can be reliably learnt; in contrast, patterns of flowers from the same inflorescence could not be discriminated. These results support the hypothesis that variable labellum patterns in O. heldreichii are involved in flower-pollinator communication which would likely help these plants to avoid geitonogamy.

Oriental orchid (Cymbidium floribundum) attracts the Japanese honeybee (Apis cerana japonica) with a mixture of 3-hydroxyoctanoic acid and 10-hydroxy- (E)-2-decenoic acid.

Science.gov (United States)

Sugahara, Michio; Izutsu, Kazunari; Nishimura, Yasuichiro; Sakamoto, Fumio

2013-02-01

The flower of the oriental orchid Cymbidium floribundum is known to attract the Japanese honeybee Apis cerana japonica. This effect is observed not only in workers but also drones and queens; that is, it attracts even swarming and absconding bees. A mixture of 3-hydroxyoctanoic acid (3-HOAA) and 10-hydroxy-(E)-2-decenoic acid (10-HDA) was identified as the active principles from the orchid flower, whereas these compounds individually have no such activity. Both compounds are also mandibular gland components of worker honeybees with related compounds. This strongly supports the idea that orchid flowers mimic bee secretions, although the ecological consequences of this relationship remain unknown. Because the flower is used to capture swarms, the present identification may contribute to the development of new techniques in traditional beekeeping for Japanese bees as well as A. cerana in Southeast Asia.

Two reported cytotypes of the emergent orchid model species Erycina pusilla are two different species

NARCIS (Netherlands)

Yeh, Hsuan Yu; Lin, Choun Sea; Jong, de Hans; Chang, Song-Bin

2017-01-01

Each species is characterized by a specific set of chromosomes, which is described as the chromosome portrait or karyotype. In general, such a karyotype is the same for all individuals in the population. An exception to that rule has recently been found in the orchid Erycina pusilla, which has

Climate change likely to reduce orchid bee abundance even in climatic suitable sites.

Science.gov (United States)

Faleiro, Frederico Valtuille; Nemésio, André; Loyola, Rafael

2018-06-01

Studies have tested whether model predictions based on species' occurrence can predict the spatial pattern of population abundance. The relationship between predicted environmental suitability and population abundance varies in shape, strength and predictive power. However, little attention has been paid to the congruence in predictions of different models fed with occurrence or abundance data, in particular when comparing metrics of climate change impact. Here, we used the ecological niche modeling fit with presence-absence and abundance data of orchid bees to predict the effect of climate change on species and assembly level distribution patterns. In addition, we assessed whether predictions of presence-absence models can be used as a proxy to abundance patterns. We obtained georeferenced abundance data of orchid bees (Hymenoptera: Apidae: Euglossina) in the Brazilian Atlantic Forest. Sampling method consisted in attracting male orchid bees to baits of at least five different aromatic compounds and collecting the individuals with entomological nets or bait traps. We limited abundance data to those obtained by similar standard sampling protocol to avoid bias in abundance estimation. We used boosted regression trees to model ecological niches and project them into six climate models and two Representative Concentration Pathways. We found that models based on species occurrences worked as a proxy for changes in population abundance when the output of the models were continuous; results were very different when outputs were discretized to binary predictions. We found an overall trend of diminishing abundance in the future, but a clear retention of climatically suitable sites too. Furthermore, geographic distance to gained climatic suitable areas can be very short, although it embraces great variation. Changes in species richness and turnover would be concentrated in western and southern Atlantic Forest. Our findings offer support to the ongoing debate of suitability

Orchid diversity in China’s Hainan Island: Distribution and conservation

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Hu, X. Y.

2015-12-01

Full Text Available Orchidaceae are widely distributed in many terrestrial ecosystems except for polar and desert areas and constitute a “flagship group” in biological conservation. As the largest tropical island of China, Hainan has five tropical forest vegetation types, namely deciduous monsoon forest, lowland rainforest, montane rainforest, montane evergreen forest, and montane cloud forest. There are 317 orchid species in the island, including 33 endemic, 158 epiphytic, 148 terrestrial, and 11 saprophytic species. Most orchids, which are mainly located in central and southern parts of the island, are generally distributed in damp tropical forests in mountains at an altitude of 500–1500 m. Highest level of endemism is also centred in these areas. Orchids are especially threatened by habitat fragmentation because they grow in small populations, and fragmentation may block gene flow and result in lower genetic diversity. In addition, due to their ornamental and medicinal value, many orchids are over-collected. Therefore, orchid conservation in Hainan Island is very urgent. The aim of this article is to determine the distribution pattern of orchids and expound research and conservation status in Hainan Island, and to propose conservation strategies for the future.Las Orchidaceae se distribuyen ampliamente en muchos ecosistemas terrestres con excepción de las zonas polares y desérticas, y constituyen una suerte de «buque insignia» de la conservación biológica. Siendo como es la mayor isla tropical de China, Hainan tiene cinco formaciones vegetales de bosques tropicales, a saber, bosque monzónico caducifolio, selva tropical de tierras bajas, bosque pluvial montano, bosque siempreverde montano y bosque mesófilo de montaña. Hay 317 especies de orquídeas en la isla, incluyendo 33 endémicas, 158 epífitas, 148 terrestres y 11 especies saprófitas. La mayoría de las orquídeas, que se localizan principalmente en el centro y el sur de la isla, se

Recurrent polymorphic mating type variation in Madagascan Bulbophyllum species (Orchidaceae) exemplifies a high incidence of auto-pollination in tropical orchids

Science.gov (United States)

Gamisch, Alexander; Fischer, Gunter A; Comes, Hans Peter

2014-01-01

The transition from outcrossing to self-fertilization is one of the most common evolutionary changes in angiosperms. The orchid family exemplifies this evolutionary trend but, because of a general lack of large-scale surveys on auto-pollination in orchid taxa, the incidence and modes of auto-pollination among (sub)tropical orchids remain poorly known. In the present study, we assessed the frequency and mode of auto-pollination within and among species of a largely monophyletic group of Madagascan Bulbophyllum. The capacity for autonomous fruit set was investigated by bagging experiments in the greenhouse and the field, complemented with detailed floral micromorphological studies of the gynostemium. Our survey comprises 393 accessions, representing at least 78 species, and thus approximately 37% of the species diversity of the genus in the Madagascan region. Our studies revealed that mating type is directly related to gynostemium structure, most often involving the presence or absence of a physical barrier termed ‘rostellum’. As a novel and unexpected finding, we identified eight species of a single lineage of Madagascan Bulbophyllum (termed ‘clade C’), in which auto-pollinating morphs (selfers), either lacking a rostellum or (rarely) possessing a stigmatic rostellum, co-exist with their pollinator-dependent conspecifics (outcrossers). We hypothesize that auto-pollination via rostellum abortion has a simple genetic basis, and probably evolved rapidly and recurrently by subtle changes in the timing of rostellum development (heterochrony). Thus, species of clade C may have an intrinsic genetic and developmental lability toward auto-pollination, allowing rapid evolutionary response under environmental, perhaps human-disturbed conditions favouring reproductive assurance. Overall, these findings should stimulate further research on the incidence, evolution, and maintenance of mating type variation in tropical orchids, as well as how they adapt(ed) to changing

Phytotoxic activity of bibenzyl derivatives from the orchid Epidendrum rigidum.

Science.gov (United States)

Hernández-Romero, Yanet; Acevedo, Laura; Sánchez, María de los Angeles; Shier, W Thomas; Abbas, Hamed K; Mata, Rachel

2005-08-10

A whole plant chloroform-methanol extract of the orchid Epidendrum rigidum inhibited radicle growth of Amaranthus hypochondriacus seedlings (IC50 = 300 microg/mL). Bioassay-guided fractionation furnished four phytotoxins, namely, gigantol (1), batatasin III (2), 2,3-dimethoxy-9,10-dihydrophenathrene-4,7-diol (9), and 3,4,9-trimethoxyphenanthrene-2,5-diol (11), along with the known flavonoids apigenin, vitexin, and isovetin and the triterterpenoids 24,24-dimethyl-9,19-cyclolanostane-25-en-3beta-ol (14) and 24-methyl-9,19-cyclolanostane-25-en-3beta-ol (15). Stilbenoids 1, 2, 9, and 11 inhibited radicle growth of A. hypochondriacus with IC50 values of 0.65, 0.1, 0.12, and 5.9 microM, respectively. Foliar application of gigantol (1) at 1 microM to 4 week old seedlings of A. hypochondriacus reduced shoot elongation by 69% and fresh weight accumulation by 54%. Bibenzyls 1 and 2, as well as synthetic analogues 4'-hydroxy-3,3',5-trimethoxybibenzyl (3), 3,3',4',5-tetramethoxybibenzyl (4), 3,4'-dihydroxy-5-methoxybibenzyl (5), 3'-O-methylbatatasin III (6), 3,3',5-trihydroxybibenzyl (7), and 3,4',5-trihydroxybibenzyl (8), were tested for phytotoxicity in axenic cultures of the small aquatic plant Lemna pausicostata. All bibenzyls derivatives except 7 and 8 inhibited growth and increased cellular leakage with IC50 values of 89.9-180 and 89.9-166 microM, respectively. The natural and synthetic bibenzyls showed marginal cytotoxicity on animal cells. The results suggest that orchid bibenzyls may be good lead compounds for the development of novel herbicidal agents.

A National Survey of Exposure to Power Frequency Magnetic Fields ('ORCHID')

International Nuclear Information System (INIS)

Hareuveny, R.; Eliyahu, I.; Yaffe, Y.; Ben David, I.; Riven, M.; Kandel, S.; Kheifets, L.

2014-01-01

This abstract briefly presents ORCHID - a national survey of exposure to power frequency magnetic fields. While the initial focus of the project was the MFs survey, the extraordinary interest and skills of the gifted children and willingness to participate in the project, persuaded us to increase its educational component. Over 50 'double' measurements (Spot and Personal) out of 100 planed have been completed. 10-15 different educational centers in Israel already applied to join the project. Extension of this project into other countries is being considered

Cytogenetics and cytotaxonomy of some Brazilian species of Cymbidioid orchids

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Leonardo Pessoa Félix

2000-12-01

Full Text Available The Cymbidioid phylad presents the widest chromosome number variation among orchids, with records varying from 2n = 10 in Psygmorchis pusilla to 2n = 168 in two species of Oncidium. In the present work, a total of 44 species were studied belonging to 20 Cymbidioid genera, as a contribution to clarifying the karyological evolution of the group. All the plants investigated were collected in Brazil, mainly in the northeast region. The chromosome variation found was similar to that previously registered in the literature. Chromosome numbers observed were: 2n = 54 (subtribe Eulophiinae, 2n = 44, 46, 92 (subtribe Cyrtopodiinae, 2n = 54, ca. 108 (subtribe Catasetinae, 2n = 52, ca. 96 (subtribe Zygopetalinae, 2n = 40, 80 (subtribe Lycastinae, 2n = 40, 42 (subtribe Maxillariinae, 2n = 40 (subtribe Stanhopeinae, 2n = 56 (subtribe Ornithocephalinae, and 2n = 12, 20, 30, 36, 42, 44, 56, 112, ca. 168 (subtribe Oncidiinae. Interphase nuclei varied widely from simple chromocenter to complex chromocenter types, with no apparent cytotaxonomic value. In the genera Catasetum and Oncidium, the terrestrial and lithophytic species presented higher ploidy levels than the epiphytic species, suggesting a higher adaptability of the polyploids to those habitats. The primary base number x = 7 seems to be associated to the haploid chromosome numbers of most Cymbidioid groups, although n = 7 was observed only in two extant genera of Oncidiinae. For each tribe, subtribe and genus the probable base numbers were discussed along with the possible relationships to the primary base number x1 = 7 admitted for the whole phylad.O clado Cymbidioid apresenta a mais ampla variação cromossômica numérica entre as orquidáceas, com registros desde 2n = 10 em Psygmorchis pusilla, até 2n = 168 em duas espécies de Oncidium. No presente trabalho, foram estudadas um total de 44 espécies pertencentes a 20 gêneros deste grupo, visando contribuir para esclarecer a evolução cariol

New Records of Bee Genera (Hymenoptera: Apoidea from Colombia

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Víctor H. González

2006-07-01

Full Text Available The solitary bee genera Lophothygater Moure y Michener (Apidae, Eucerini and Tapinotaspoides Moure (Apidae, Tapinotaspidini are reported from northern Colombia for the first time. These genera were previously known from the central Brazilian Amazonian and Argentina and Paraguay, respectively.

LEAF SURFACE COMPARISON OF THREE GENERA OF ARACEAE IN INDONESIA

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Ina Erlinawati

2013-07-01

Full Text Available Alocasia, Colocasia and Remusatia are the genera of Araceae family which have high economic value, such as for food and ornamental plants. Those three genera, previously treated as Colocasieae tribe. Later, based on Nauheimer, L. et al. study in 2012, using plastid and nuclear DNA, Alocasia is placed in different tribe. Study on leaf anatomy of Araceae is still poor known. Comparison of three genera of Araceae, indicates a difference in the epidermis. Alocasia and Colocasia have stomata on both leaf surfaces (amphistomatic but Remusatia has stomata only limited on the lower surface. The three genera can be distinguished from epidermal cell shape, stomata complex and the presence of stomata.

Confirmation by DNA analysis that Contarinia maculipennis (Diptera: Cecidomyiidae) is a polyphagous pest of orchids and other unrelated cultivated plants.

Science.gov (United States)

Uechi, N; Tokuda, M; Yukawa, J; Kawamura, F; Teramoto, K K; Harris, K M

2003-12-01

The cytochrome oxidase subunit I gene in mitochondrial DNA of 53 larvae of Contarinia maculipennis Felt from flower buds of various host plants, collected from Hawaii, Japan and Thailand was analysed. Monophyly of the clade including C. maculipennis from Hawaii, Thailand and Japan was supported. There was no sequential variation within the specimens from Hawaii and Japan, which differed from one another by 6 bp (1.37%). Three haplotypes were recognized in specimens from Thailand but differences from Hawaiian and Japanese specimens were small. Overall, there were no differences in the 146 deduced amino acid residues. It is therefore concluded that C. maculipennis is a polyphagous species that can develop on plant hosts representing at least seven botanical families. This pest of Dendrobium flower buds in glasshouses is considered to have entered Hawaii, Florida and Japan from Southeast Asia, and was recently intercepted in the Netherlands. Infestations have established and spread in orchid glasshouses, causing concern about the possibility of more extensive damage to orchids and to crops, such as bitter gourd, grown in close proximity to orchid glasshouses in Japan. The potential usefulness of DNA analysis in determining host plant ranges of morphologically identical cecidomyiid species that are currently identified solely on differences of host plant is emphasized.

Substrate specific hydrolysis of aromatic and aromatic-aliphatic esters in orchid tissue cultures

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Agnieszka Mironowicz

2014-01-01

Full Text Available We found that tissue cultures of higher plants were able, similarly as microorganisms, to transform low-molecular-weight chemical compounds. In tissue cultures of orchids (Cymbidium 'Saint Pierre' and Dendrobium phalaenopsis acetates of phenols and aromatic-aliphatic alcohols were hydrolyzed, whereas methyl esters of aromatic and aromatic-aliphatic acids did not undergo this reaction. Acetates of racemic aromatic-aliphatic alcohols were hydrolyzed with distinct enantiospecificity.

Olfactory specialization for perfume collection in male orchid bees.

Science.gov (United States)

Mitko, Lukasz; Weber, Marjorie G; Ramirez, Santiago R; Hedenström, Erik; Wcislo, William T; Eltz, Thomas

2016-05-15

Insects rely on the olfactory system to detect a vast diversity of airborne molecules in their environment. Highly sensitive olfactory tuning is expected to evolve when detection of a particular chemical with great precision is required in the context of foraging and/or finding mates. Male neotropical orchid bees (Euglossini) collect odoriferous substances from multiple sources, store them in specialized tibial pouches and later expose them at display sites, presumably as mating signals to females. Previous analysis of tibial compounds among sympatric species revealed substantial chemical disparity in chemical composition among lineages with outstanding divergence between closely related species. Here, we tested whether specific perfume phenotypes coevolve with matching olfactory adaptations in male orchid bees to facilitate the location and harvest of species-specific perfume compounds. We conducted electroantennographic (EAG) measurements on males of 15 sympatric species in the genus Euglossa that were stimulated with 18 compounds present in variable proportions in male hind tibiae. Antennal response profiles were species-specific across all 15 species, but there was no conspicuous differentiation between closely related species. Instead, we found that the observed variation in EAG activity follows a Brownian motion model of trait evolution, where the probability of differentiation increases proportionally with lineage divergence time. However, we identified strong antennal responses for some chemicals that are present as major compounds in the perfume of the same species, thus suggesting that sensory specialization has occurred within multiple lineages. This sensory specialization was particularly apparent for semi-volatile molecules ('base note' compounds), thus supporting the idea that such compounds play an important role in chemical signaling of euglossine bees. Overall, our study found no close correspondence between antennal responses and behavioral

Microsatellite Markers in the Western Prairie Fringed Orchid, Platanthera praeclara (Orchidaceae

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Andrew A. Ross

2013-04-01

Full Text Available Premise of the study: Primers for 31 microsatellite-containing loci were developed for the threatened orchid Platanthera praeclara to enable characterization of the population genetics of this tallgrass prairie native. Methods and Results: Sixteen polymorphic microsatellite loci were identified from four populations. Six of these loci were not in linkage disequilibrium. The average number of alleles per locus per population ranged from 6.4 to 8.9. Conclusions: The results indicate that six of the polymorphic loci will be useful in future studies of population structure, gene flow, and genetic diversity.

Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy

DEFF Research Database (Denmark)

Barsberg, Søren Talbro; Lee, Y.-I.; Rasmussen, Hanne Nina

2018-01-01

Cite this article: Barsberg ST, Lee Y-I, Rasmussen HN. Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy. Seed Science Research https:// doi.org/10.1017/S0960258517000344......Cite this article: Barsberg ST, Lee Y-I, Rasmussen HN. Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy. Seed Science Research https:// doi.org/10.1017/S0960258517000344...

Collectors on illicit collecting: Higher loyalties and other techniques of neutralization in the unlawful collecting of rare and precious orchids and antiquities.

Science.gov (United States)

Mackenzie, Simon; Yates, Donna

2016-08-01

Trafficking natural objects and trafficking cultural objects have been treated separately both in regulatory policy and in criminological discussion. The former is generally taken to be 'wildlife crime' while the latter has come to be considered under the auspices of a debate on 'illicit art and antiquities'. In this article we study the narrative discourse of high-end collectors of orchids and antiquities. The illicit parts of these global trades are subject to this analytical divide between wildlife trafficking and art trafficking, and this has resulted in quite different regulatory structures for each of these markets. However, the trafficking routines, the types and levels of harm involved, and the supply-demand dynamics in the trafficking of orchids and antiquities are actually quite similar, and in this study we find those structural similarities reflected in substantial common ground in the way collectors talk about their role in each market. Collectors of rare and precious orchids and antiquities valorize their participation in markets that are known to be in quite considerable degree illicit, appealing to 'higher loyalties' such as preservation, appreciation of aesthetic beauty and cultural edification. These higher loyalties, along with other techniques of neutralization, deplete the force of law as a guide to appropriate action. We propose that the appeal to higher loyalties is difficult to categorize as a technique of neutralization in this study as it appears to be a motivational explanation for the collectors involved. The other classic techniques of neutralization are deflective, guilt and critique reducing narrative mechanisms, while higher loyalties drives illicit behaviour in collecting markets for orchids and antiquities in ways that go significantly beyond the normal definition of neutralization.

Effects of Droplet-Vitrification Cryopreservation Based on Physiological and Antioxidant Enzyme Activities of Brassidium Shooting Star Orchid

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Safrina Rahmah

2015-01-01

Full Text Available Protocorm-like bodies (PLBs of Brassidium Shooting Star orchid were successfully cryopreserved using droplet-vitrification method. Vitrification based cryopreservation protocol is comprised of preculture, osmoprotection, cryoprotection, cooling, rewarming, and growth recovery and each and every step contributes to the achievement of successful cryopreservation. In order to reveal the lethal and nonlethal damage produced by cryopreservation, histological observation, scanning electron microscopy (SEM, and biochemical analysis were carried out in both cryopreserved and noncryopreserved PLBs of Brassidium Shooting Star orchid comparing with the control PLBs stock culture. Histological and scanning electron microscopy analyses displayed structural changes in cryopreserved PLBs due to the impact of cryoinjury during exposure to liquid nitrogen. Total soluble protein significantly increased throughout the dehydration process and the highest value was achieved when PLBs were stored in liquid nitrogen. Ascorbate peroxidase (APX and catalase (CAT showed the highest enzyme activities in both dehydration and cryostorage treatments indicating that stress level of PLBs was high during these stages.

The effects of smoke derivatives on in vitro seed germination and development of the leopard orchid Ansellia africana

Czech Academy of Sciences Publication Activity Database

Papenfus, H. B.; Naidoo, D.; Pošta, Martin; Finnie, J. F.; van Staden, J.

2016-01-01

Roč. 18, č. 2 (2016), s. 289-294 ISSN 1435-8603 Institutional support: RVO:61388963 Keywords : Ansellia africana * developmental rate index * germination rate index * karrikinolide * leopard orchid * smoke-water * trimethylbutenolide Subject RIV: CC - Organic Chemistry Impact factor: 2.106, year: 2016

New Records and Name Changes for the Orchids in the Solomon Islands

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Tian-Chuan Hsu

2016-03-01

Full Text Available One genus (Anoectochilus and 12 species (Agrostophyllum neoguineense, Anoectochilus papuanus, Arundina graminifolia, Bulbophyllum aemulum, B. bisepalum, B. nubigenum, B. ochroleucum, B. phreatiopse, Corybas solomonensis, Crepidium laevis, Didymoplexis striata, Epipogium roseum of orchids (Orchidaceae are first recorded to the flora of the Solomon Islands during the 2012–2015 field expeditions. Geographic data, ecological and taxonomic notes and illustrations of those species are provided. A new combination (Pinalia oligotricha and a new name (Dendrobium bougainvilleanum are also proposed for fitting recent systematic alterations within Orchidaceae.

A preliminary population study of alcove bog orchid (Platanthera zothecina) at Navajo National Monument, Arizona

Science.gov (United States)

Laura E. Hudson

2001-01-01

This study on Platanthera zothecina (alcove bog orchid) was initiated by the National Park Service after a recent threatened and endangered species survey at Navajo National Monument. It is listed as Category 2 (species of special concern) by the U.S. Fish and Wildlife Service, and Category 3 (likely to become endangered) by the Navajo Nation. Because P. zothecina is a...

Evidence of separate karyotype evolutionary pathway in Euglossa orchid bees by cytogenetic analyses

OpenAIRE

FERNANDES, ANDERSON; WERNECK, HUGO A.; POMPOLO, SILVIA G.; LOPES, DENILCE M.

2013-01-01

Euglossini are solitary bees considered important pollinators of many orchid species. Information regarding chromosome organization is available for only a small number of species in this group. In the present work, the species Euglossa townsendi and E. carolina were analyzed by cytogenetic techniques to collect information that may aid the understanding of their evolution and chromosomal organization. The chromosome number found was n = 21 for males and 2n = 42 for females in the two species...

The orchid bees (Hymenoptera, Apidae, Euglossina in a forest fragment from western Paraná state, Brazil

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Rodrigo B. Gonçalves

2014-01-01

Full Text Available An orchid bee inventory was carried out in Parque Estadual São Camilo, Palotina, Paraná (Brazil; conservation unit with about 400 hectares of Semidecidual Seasonal forest. Three bait traps were installed at the border of the fragment, each one containing the following fragrances: 1,8-cineole, eugenol, and vanilin. Sampling was carried out from 09am to 03pm, October 2011 to June 2012, summing up nine sampling days. A total of 186 specimens distributed among seven species were sampled. Eufriesea violacea with 140 specimens was the most common species, followed by Euglossa fimbriata (31, Euglossa annectans (9, Eulaema nigrita (4, Euglossa cordata (1, Euglossa pleosticta (1, and Exaerete smaragdina (1. According to qualitative and NMDS analysis, the orchid bee fauna of Parque Estadual São Camilo is representative of Semidecidual Seasonal forest, with richness comparable with other assemblages in the southern distribution of Euglossina. The sampled bee richness indicates that forest fragments, even small and isolated, are important in the conservation of this bees.

On The Etymology of Some Lichen Genera Names

OpenAIRE

Yavuz, Mustafa

2016-01-01

This study aims to investigate the etymology of some lichens’ genera names used in modern taxonomical botany. Growing on rocks, trees and even on soil, lichens are the only terrestrial cryptogamic organisms containing a fungal and an algal partner. Within this study, it has been focused to diagnose and improve an understanding of the similarities and differences between the names of lichen genera by comparing them in several languages. The etymological data collected during the study belongs ...

Journal of Genetics | Indian Academy of Sciences

Indian Academy of Sciences (India)

Epigenetic regulatory posttranslational histone modification marks not only function individually but also capable to act in combination as a unique pattern. A total of 16 plant species belonging to 11 genera of eight families (five dicots and threemonocots) including land plants, epiphytes (orchids) and the holokinetic taxa ...

The genera of Nematinae (Hymenoptera, Tenthredinidae

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Marko Prous

2014-10-01

Full Text Available Recent phylogenetic studies on Nematinae based on DNA sequences have shown extensive incongruencies with current nomenclature of genus-group taxa. Here, we expand previous DNA sequence datasets based on three genes (CoI, Cytb, and EF-1α, to include a fourth (NaK and more genera. The analyses largely confirm the previous findings, particularly the existence of two well-supported large clades, Euura and Pristiphora, together comprising more than 75% of the species of Nematinae. Basal relationships within these two clades remain poorly resolved, mirroring the difficulties in delimiting genera based on morphology. In addition, a moderately supported small clade, Nematus, is found. The relationships between the Euura, Pristiphora, and Nematus clades are uncertain. Therefore, to stabilize the nomenclature we treat these clades as genera. This taxonomic treatment results in numerous new combinations of species names. The following synonymies are proposed for the available genus-group names. Synonyms of Euura Newman, 1837: Cryptocampus Hartig, 1837, Euura Agassiz, 1848, Pontania Costa, 1852, syn. n., Epitactus Förster, 1854, syn. n., Amauronematus Konow, 1890, syn. n., Holcocneme Konow, 1890, syn. n., Pachynematus Konow, 1890, syn. n., Holcocnema Schulz, 1906, syn. n., Holcocnemis Konow, 1907, syn. n., Pteronidea Rohwer, 1911, syn. n., Pontopristia Malaise, 1921, syn. n., Brachycoluma Strand, 1929, syn. n., Decanematus Malaise, 1931, syn. n., Pikonema Ross, 1937, syn. n., Phyllocolpa Benson, 1960, syn. n., Eitelius Kontuniemi, 1966, syn. n., Gemmura E.L. Smith, 1968, Eupontania Zinovjev, 1985, syn. n., Larinematus Zhelochovtsev, 1988, syn. n., Polynematus Zhelochovtsev, 1988, syn. n., Bacconematus Zhelochovtsev, 1988, syn. n., Alpinematus Lacourt, 1996, syn. n., Epicenematus Lacourt, 1998, syn. n., Kontuniemiana Lacourt, 1998, syn. n., Lindqvistia Lacourt, 1998, syn. n., Luea Wei and Nie, 1998, syn. n., and Tubpontania Vikberg, 2010, syn. n. Synonyms

Mosquito Surveys Carried out On Green Island, Orchid Island, and Penghu Island, Taiwan, in 2003

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Hwa-Jen Teng

2005-02-01

Full Text Available Field surveys of mosquitoes were carried out on Green, Orchid, and Penghu Islands in 2003 to ascertain the status of mosquito vectors. Eighteen species of mosquitoes were collected, including three species of Anopheles, four species of Aedes, eight species of Culex, two species of Armigeres, and one species of Malaya. Seventeen previously recorded species were not collected in this study but 11 species collected had not previously been recorded. Ten newly recorded species, An. maculatus, An. takasagoensis, Ae. alcasidi, Ae. lineatopennis, Ae. vexans vexans, Ar. omissus, Cx. vishnui, Cx. halifaxii, Cx. hayashii, and Cx. neomimulus, were collected on Green Island and one previously unrecorded species, Ar. subalbatus, was collected on Orchid Island. Potential vectors An. maculatus and An. sinensis, malaria vectors in Korea and Mainland China, Ae. albopictus, a vector of dengue in Taiwan and West Nile virus in the USA, Cx. vishnui and Cx. tritaeniorhynchus, Japanese encephalitis vectors in Taiwan, Ae. vexans vexans, an eastern equine encephalitis vector in the USA, and Cx. quinquefasciatus, a vector of filariasis in Taiwan and West Nile virus in the USA, were among the mosquito species collected.

Cloning and transcription analysis of an AGAMOUS- and SEEDSTICK ortholog in the orchid Dendrobium thyrsiflorum (Reichb. f.)

DEFF Research Database (Denmark)

Skipper, Martin; Johansen, Louise Buchholt; Pedersen, Kim B.

2006-01-01

Studies have shown that several plant species posses AGAMOUS (AG) and SEEDSTICK (STK) orthologs. These genes are part of the so-called C- and D MADS-box gene lineages and play key roles in ovule development in Arabidopsis thaliana. We have cloned an AG- and STK ortholog in the orchid Dendrobium...

Golden mean renormalization for a generalized Harper equation: The Ketoja-Satija orchid

International Nuclear Information System (INIS)

Mestel, B.D.; Osbaldestin, A.H.

2004-01-01

We provide a rigorous analysis of the fluctuations of localized eigenstates in a generalized Harper equation with golden mean flux and with next-nearest-neighbor interactions. For next-nearest-neighbor interaction above a critical threshold, these self-similar fluctuations are characterized by orbits of a renormalization operator on a universal strange attractor, whose projection was dubbed the ''orchid'' by Ketoja and Satija [Phys. Rev. Lett. 75, 2762 (1995)]. We show that the attractor is given essentially by an embedding of a subshift of finite type, and give a description of its periodic orbits

Weak trophic links between a crab-spider and the effective pollinators of a rewardless orchid

Science.gov (United States)

Quintero, Carolina; Corley, Juan C.; Aizen, Marcelo A.

2015-01-01

Sit and wait predators hunting on flowers are considered to be exploiters of plant-pollinator mutualisms. Several studies have shown that plant-pollinator interactions can be highly susceptible to the impact of a third trophic level, via consumptive (direct) and non-consumptive (indirect) effects that alter pollinator behavior and, ultimately, plant fitness. However, most flowering plants attract a wide array of flower visitors, from which only a subset will be effective pollinators. Hence, a negative effect of an ambush predator on plant fitness should be expected only when: (i) the effective pollinators are part of the predators' diet and/or (ii) the non-consumptive effects of predator presence (e.g. dead prey) alter the behavior of effective pollinators and pollen movement among individual plants. We analyzed the direct and indirect effects of a crab-spider (Misumenops pallidus), on the pollination and reproductive success of Chloraea alpina, a Patagonian rewardless orchid. Our results indicate that most of the flower visitors do not behave as effective pollinators and most effective pollinators were not observed as prey for the crab-spider. In terms of non-consumptive effects, inflorescences with and without spiders and/or dead-prey did not vary the frequency of flower visitors, nor pollinia removal or deposition. Hence, it is not surprising that M. pallidus has a neutral effect on pollinia removal and deposition as well as on fruit and seed set. Similar to other rewardless orchids, the low reproductive success of C. alpina (∼6% fruit set) was associated with the limited number of visits by effective pollinators. Negative top-down effects of a flower-visitor predator on plant pollination may not be anticipated without studying the direct and indirect effects of this predator on the effective pollinators. In pollination systems where effective pollinators visited flowers erratically, such as in deceptive orchids, we expect weak or no effect of predators on

Is the capture success of orchid bees (Hymenoptera, Apoidea influenced by different baited trap designs? A case study from southern Brazil

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Nicolle Veiga Sydney

2015-03-01

Full Text Available Orchid bees are increasingly applied on Neotropical biomonitoring and bioindication studies due to the relative easiness of sampling and identification when compared to other bee groups. A considerable number of orchid bee community studies have been adopting baited traps as a sampling method, especially for replication purposes. However, the trap attributes are variable, and hitherto no evaluation of different designs was carried out. Here, five attributes of baited traps were tested: trap volume, number of entrance holes, presence of landing platform, kind of landing platform, and fixation content. We use Mann-Whitney tests to access differences in richness and abundance capture rates for each trap design. We found that volume, number of entrance holes, and fixation content do not influence orchid bees capture. However, the design without landing platforms had a significantly higher capture rate for richness when compared with sanded landing platforms. On the other hand, analyzing the kind of landing platform, we detected a significantly higher richness and abundance for the trap with landing platforms glued with sand. Despite the fact that the effects of different designs tested here were very punctual, we consider that results from samples taken with different baited trap designs are comparable. Some adjustments on trap design can be done according to the particularities of future studies.

Seagrass Ecosystem Services and Their Variability across Genera and Geographical Regions.

Science.gov (United States)

Mtwana Nordlund, Lina; Koch, Evamaria W; Barbier, Edward B; Creed, Joel C

2016-01-01

Threats to and loss of seagrass ecosystems globally, impact not only natural resources but also the lives of people who directly or indirectly depend on these systems. Seagrass ecosystems play a multi-functional role in human well-being, e.g. food through fisheries, control of erosion and protection against floods. Quantifying these services reveals their contributions to human well-being and helps justify seagrass conservation. There has been no comprehensive assessment as to whether seagrass ecosystem services are perceived to vary over the globe or amongst genera. Our study compiles the most complete list of ecosystem services provided by seagrasses so far, including bioregional- and genus-specific information from expert opinion and published studies. Several seagrass ecosystem services vary considerably in their (known) provision across genera and over the globe. Seagrasses genera are clearly not all equal with regard to the ecosystem services they provide. As seagrass genera are not evenly distributed over all bioregions, the presence of an ecosystem service sometimes depends on the genera present. Larger sized seagrass genera (e.g. Posidonia, Enhalus) are perceived to provide more substantial and a wider variety of ecosystem services than smaller species (e.g. Halophila, Lepilaena). Nevertheless, smaller species provide important services. Our findings point out data gaps, provide new insight for more efficient management and recommend caution in economic valuation of seagrass services worldwide.

Ex Vitro Seedling Development from In Vitro Rhizome-Like Bodies in Eulophia promensis Lindl.: A New Technique for Orchid Propagation

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Mohammad Musharof Hossain

2015-01-01

Full Text Available This communication describes in vitro seed germination, embryo differentiation, and ex vitro seedling production from in vitro rhizome-like bodies of a terrestrial orchid, Eulophia promensis Lindl. Effects of two nutrient media, namely, Murashige and Skoog (MS and Phytotechnology Orchid Seed Sowing medium (P723 supplemented with 6-benzylaminopurine (BAP; 0.5–1.0 mgL−1 and/or α-naphthalene acetic acid (NAA; 0.5–1.0 mgL−1 and activated charcoal (2.0 gL−1, were studied on seed germination and subsequent development of embryos. Maximum seed germination (100% was recorded in P723 medium fortified with 1.0 mgL−1 BAP + 2.0 gL−1 activated charcoal. The different developmental stages of protocorm morphogenesis were traced out. In subsequent subcultures, the protocorms proliferated profusely and developed rhizome-like bodies (RLBs with numerous hair-like structures. These RLBs were transferred to pots containing potting mixture composed of humus + coir dust + saw dust (1 : 1 : 1 where ∼80% of RLBs survived and produced 1–3 seedlings per RLB. This is the first time report for in vitro germination of seeds and ex vitro seedling production from in vitro raised RLBs in Eulophia promensis. This is a time saving and cost effective protocol that could be extended to other economically important, rare, and endangered orchids for propagation and conservation.

Identification of warm day and cool night conditions induced flowering-related genes in a Phalaenopsis orchid hybrid by suppression subtractive hybridization.

Science.gov (United States)

Li, D M; Lü, F B; Zhu, G F; Sun, Y B; Xu, Y C; Jiang, M D; Liu, J W; Wang, Z

2014-02-14

The influence of warm day and cool night conditions on induction of spikes in Phalaenopsis orchids has been studied with respect to photosynthetic efficiency, metabolic cycles and physiology. However, molecular events involved in spike emergence induced by warm day and cool night conditions are not clearly understood. We examined gene expression induced by warm day and cool night conditions in the Phalaenopsis hybrid Fortune Saltzman through suppression subtractive hybridization, which allowed identification of flowering-related genes in warm day and cool night conditions in spikes and leaves at vegetative phase grown under warm daily temperatures. In total, 450 presumably regulated expressed sequence tags (ESTs) were identified and classified into functional categories, including metabolism, development, transcription factor, signal transduction, transportation, cell defense, and stress. Furthermore, database comparisons revealed a notable number of Phalaenopsis hybrid Fortune Saltzman ESTs that matched genes with unknown function. The expression profiles of 24 genes (from different functional categories) have been confirmed by quantitative real-time PCR in induced spikes and juvenile apical leaves. The results of the real-time PCR showed that, compared to the vegetative apical leaves, the transcripts of genes encoding flowering locus T, AP1, AP2, KNOX1, knotted1-like homeobox protein, R2R3-like MYB, adenosine kinase 2, S-adenosylmethionine synthetase, dihydroflavonol 4-reductase, and naringenin 3-dioxygenase accumulated significantly higher levels, and genes encoding FCA, retrotransposon protein Ty3 and C3HC4-type RING finger protein accumulated remarkably lower levels in spikes of early developmental stages. These results suggested that the genes of two expression changing trends may play positive and negative roles in the early floral transition of Phalaenopsis orchids. In conclusion, spikes induced by warm day and cool night conditions were complex in

First Guatemalan record of natural hybridisation between Neotropical species of the Lady's Slipper orchid (Orchidaceae, Cypripedioideae)

Czech Academy of Sciences Publication Activity Database

Szlachetko, D. L.; Kolanowska, Marta; Müller, F.; Vannini, J.; Rojek, J.; Gorniak, M.

2017-01-01

Roč. 5, č. 12 (2017), č. článku e4162. ISSN 2167-8359 Institutional support: RVO:86652079 Keywords : in-vitro * reproductive isolation * seed-germination * hybrid orchid * sample-size * dna * performance * nuclear * models * distributions * Cypripedium * Cypripediaceae * Hybridization * ENM analysis * Nuclear markers * Taxonomy * Irapeana Subject RIV: EF - Botanics OBOR OECD: Plant sciences, botany Impact factor: 2.177, year: 2016

Temporal and spatial regulation of anthocyanin biosynthesis provide diverse flower colour intensities and patterning in Cymbidium orchid.

Science.gov (United States)

Wang, Lei; Albert, Nick W; Zhang, Huaibi; Arathoon, Steve; Boase, Murray R; Ngo, Hanh; Schwinn, Kathy E; Davies, Kevin M; Lewis, David H

2014-11-01

This study confirmed pigment profiles in different colour groups, isolated key anthocyanin biosynthetic genes and established a basis to examine the regulation of colour patterning in flowers of Cymbidium orchid. Cymbidium orchid (Cymbidium hybrida) has a range of flower colours, often classified into four colour groups; pink, white, yellow and green. In this study, the biochemical and molecular basis for the different colour types was investigated, and genes involved in flavonoid/anthocyanin synthesis were identified and characterised. Pigment analysis across selected cultivars confirmed cyanidin 3-O-rutinoside and peonidin 3-O-rutinoside as the major anthocyanins detected; the flavonols quercetin and kaempferol rutinoside and robinoside were also present in petal tissue. β-carotene was the major carotenoid in the yellow cultivars, whilst pheophytins were the major chlorophyll pigments in the green cultivars. Anthocyanin pigments were important across all eight cultivars because anthocyanin accumulated in the flower labellum, even if not in the other petals/sepals. Genes encoding the flavonoid biosynthetic pathway enzymes chalcone synthase, flavonol synthase, flavonoid 3' hydroxylase (F3'H), dihydroflavonol 4-reductase (DFR) and anthocyanidin synthase (ANS) were isolated from petal tissue of a Cymbidium cultivar. Expression of these flavonoid genes was monitored across flower bud development in each cultivar, confirming that DFR and ANS were only expressed in tissues where anthocyanin accumulated. Phylogenetic analysis suggested a cytochrome P450 sequence as that of the Cymbidium F3'H, consistent with the accumulation of di-hydroxylated anthocyanins and flavonols in flower tissue. A separate polyketide synthase, identified as a bibenzyl synthase, was isolated from petal tissue but was not associated with pigment accumulation. Our analyses show the diversity in flower colour of Cymbidium orchid derives not from different individual pigments but from subtle

Annotations on the genera Triscolia, Megascolia and Scolia (Hymenoptera, Scoliidae)

NARCIS (Netherlands)

Betrem, J.G.; Chester Bradley, J.

1964-01-01

This communication has been divided in three sections. Section A deals with the types of some taxa belonging to the genera Triscolia, Megascolia and Scolia; section B deals with the species of the genera Triscolia and Megascolia; a third section dealing with the species of the genus Scolia will be

Orchidaceae, Chotanagpur, state of Jharkhand, India.

Directory of Open Access Journals (Sweden)

Kumar, P.

2007-01-01

Full Text Available Orchids display a diversified range in terms of shape, size and colour of flowers. They have a unique floralmorphology compared to other angiospermic plants. They have minute seeds that are dispersed through air, and thatmay be why they are distributed throughout the world, except for the hot deserts and Antarctica. Though the familyOrchidaceae represents a highly advanced group of plants, they are highly susceptible to even slight changes inenvironmental conditions. In India, orchids are represented by 1,141 species belonging to 186 genera. The present studywas conducted on the Chotanagpur region of India, most of the part of which lies in the state of Jharkhand. A systematicsurvey was conducted through out the state from April 2002, on foot in different forested regions in different seasons. Achecklist of 63 species of orchids recorded from this area is provided. That includes 26 new records.

Blown by the wind: the ecology of male courtship display behavior in orchid bees.

Science.gov (United States)

Pokorny, Tamara; Vogler, Ira; Losch, René; Schlütting, Patrick; Juarez, Pedro; Bissantz, Nicolai; Ramírez, Santiago R; Eltz, Thomas

2017-04-01

Many insects rely on chemical signals to transmit precise information on the location, identity, and quality of potential mates. Chemical signals are often broadcasted at sites with physical properties that maximize signal propagation and signal transmission. Male neotropical orchid bees (Euglossini) perch and display on vertical branches and tree trunks in the forest to expose volatile blends (perfumes) that they previously collected from their environment. Previous studies have shown that the chemical composition of perfume blends is highly differentiated even between closely related species. However, variation in behavioral components of perfume exposure and male display remain poorly understood. We conducted a four-year study on orchid bee display sites (8 species) in pacific Costa Rica, using field observations along with chemical analysis and cage experiments to assess display niche partitioning among sympatric species. We evaluated the influence of physical factors (terrain, wind, light) on the distribution of perch sites and on display behavior, and tested a prediction of the sex pheromone-analogue hypothesis, i.e., that displaying males have above-average quantities or qualities of acquired perfumes. Males of different species displayed in the same general area and sometimes in close proximity to each other, but partitioned the display niche by selecting different perch diameters, display heights, and by displaying at different times of the day. Most perch sites were located inside the forest on elevated ground, especially along ridges, where stronger winds may help disperse perfume signals. Furthermore, the angular position of displaying males on perches was narrowly determined by wind direction, with males being positioned on the downwind side of the perch, where they would be most conspicuous to conspecifics approaching on an odor trail. Although our results generally support the hypothesis that perfumes serve as pheromone analogues, we did not find

Is floral divergence sufficient to maintain species boundaries upon secondary contact in Mediterranean food-deceptive orchids?

Science.gov (United States)

Zitari, A; Scopece, G; Helal, A N; Widmer, A; Cozzolino, S

2012-01-01

Analyzing the processes that determine whether species boundaries are maintained on secondary contact may shed light on the early phase of speciation. In Anacamptis morio and Anacamptis longicornu, two Mediterranean orchid sister-species, we used molecular and morphological analyses, together with estimates of pollination success and experimental crosses, to assess whether floral isolation can shelter the species' genomes from genetic admixture on secondary contact. We found substantial genetic and morphological homogenization in sympatric populations in combination with an apparent lack of postmating isolation. We further detected asymmetric introgression in the sympatric populations and an imbalance in cytotype representation, which may be due either to a difference in flowering phenology or else be a consequence of cytonuclear incompatibilities. Estimates of genetic clines for markers across sympatric zones revealed markers that significantly deviated from neutral expectations. We observed a significant correlation between spur length and reproductive success in sympatric populations, which may suggest that directional selection is the main cause of morphological differentiation in this species pair. Our results suggest that allopatric divergence has not led to the evolution of sufficient reproductive isolation to prevent genomic admixture on secondary contact in this orchid species pair. PMID:21792224

A checklist and adult key to the Chinese stonefly (Plecoptera) genera.

Science.gov (United States)

Chen, Zhi-Teng; Du, Yu-Zhou

2018-01-23

The first checklist of the known stonefly genera of China is presented. Using relevant literature and available specimens, a diagnostic key to the ten families representing 65 genera is provided. In addition, illustrations for the key characters are provided.

The significance of gathering wild orchid tubers for orphan household livelihoods in a context of HIV/AIDS in Tanzania

NARCIS (Netherlands)

Challe, J.F.X.; Niehof, A.; Struik, P.C.

2011-01-01

We investigated the role of gathering and selling the edible tubers of wild orchids by children orphaned by AIDS as one of their livelihood strategies, through a household survey administered to 152 households in three villages in the Southern Highlands of Tanzania during 2006 and 2007.

Delimiting Cladosporium from morphologically similar genera

NARCIS (Netherlands)

Crous, P.W.; Braun, U.; Schubert, K.; Groenewald, J.Z.

2007-01-01

The genus Cladosporium is restricted to dematiaceous hyphomycetes with a coronate scar type, and Davidiella teleomorphs. In the present study numerous cladosporium-like taxa are treated, and allocated to different genera based on their morphology and DNA phylogeny derived from the LSU nrRNA gene.

Flora of St Katherine Protectorate: key to families and genera ...

African Journals Online (AJOL)

An illustrated key to families and genera of the flora of the St Katherine Protectorate is provided to facilitate the identification of the unique flora of the area, based on five years of collecting mainly in the mountains and wadis surrounding the town of St Katherine. The key includes 43 families and 141 genera, the families ...

New species of Megastylus (Hymenoptera: Ichneumonidae: Orthocentrinae) reared from larvae of Keroplatidae fungus gnats (Diptera) in a Dutch orchid greenhouse

NARCIS (Netherlands)

Humala, Andrei E.; Kruidhof, Marjolein; Woelke, Joop

2017-01-01

A new parasitoid wasp species belonging to the genus Megastylus (Hymenoptera: Ichneumonidae: Orthocentrinae) found in an orchid nursery in The Netherlands is described and illustrated: Megastylus woelkei sp. nov. It was reared from parasitized larvae of fungus gnats (Diptera: Keroplatidae). The

Controle químico de brilhantina (Pilea microphylla no cultivo de orquídeas Chemical control of Pilea microphylla in orchid cultivation

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F.C.L. Freitas

2007-09-01

Full Text Available Este trabalho teve como objetivo avaliar a eficácia do oxyfluorfen no controle da brilhantina (Pilea microphylla em cultivo de orquídeas. Foram realizados dois experimentos, no delineamento de blocos ao acaso, no esquema fatorial 2 x 7, com três repetições. Um dos experimentos foi constituído por duas espécies de orquídeas (Epidendrum ibaguensis e Dendrobium sp. e sete doses de oxyfluorfen (0,000, 0,024, 0,072, 0,144, 0,216, 0,288 e 0,36 L ha-1 do i.a., pulverizadas em área total, e o outro, pelas mesmas espécies e sete concentrações de oxyfluorfen (0,00000 0,00036, 0,00072, 0,00144, 0,00288, 0,00576 e 0,01152% do i.a., aplicadas em pulverização dirigida na brilhantina, sem atingir as folhas de orquídea. Cada unidade experimental foi representada por um vaso, com uma planta de orquídea, infestado com brilhantina. Aos 15, 30 e 60 dias após a aplicação do herbicida (DAA, foram realizadas avaliações visuais de toxidez na orquídea e de controle de brilhantina, utilizando-se a escala de 0 (ausência de toxidez a 100 (morte das plantas. Não houve interação entre fatores, espécie e dose ou concentração do herbicida nem diferença no comportamento do herbicida entre as espécies, no que se refere às características avaliadas, em nenhum dos experimentos. Não foram observados sintomas de toxidez nas plantas de orquídea em nenhum dos tratamentos avaliados. Verificou-se controle eficiente de brilhantina, acima de 90%, para as doses superiores a 0,26 e 0,25 L ha- 1, aos 30 e 60 dias DAA, respectivamente, na aplicação em área total; e nas concentrações superiores a 0,0020 e 0,0019%, aos 30 e 60 DAA, respectivamente, na aplicação dirigida. O oxyfluorfen promoveu eficiente controle de brilhantina através da pulverização em área total e dirigida, sem causar danos às plantas de orquídeas.This study aimed to evaluate the efficacy of oxyfluorfen in the control of Pilea microphylla in orchid cultivation. Two experiments

Increasing populations of Kentucky lady’s slipper orchid on the Kisatchie National Forest: seedling production and outplanting trials

Science.gov (United States)

James Barnett; Shannan Sharp; Kevin Allen; Andy Scott

2013-01-01

The Kentucky lady’s slipper orchid (Cypripedium kentuckiense C.F. Reed) is a tall, stately perennial plant with the largest flowers of any Cypripedium known. Its range includes much of the Southeastern United States, though it is rare throughout its range due to specific edaphic and climatic habitat requirements. In Louisiana, a...

Is floral divergence sufficient to maintain species boundaries upon secondary contact in Mediterranean food-deceptive orchids?

OpenAIRE

Zitari, A; Scopece, G; Helal, A N; Widmer, A; Cozzolino, S

2011-01-01

Analyzing the processes that determine whether species boundaries are maintained on secondary contact may shed light on the early phase of speciation. In Anacamptis morio and Anacamptis longicornu, two Mediterranean orchid sister-species, we used molecular and morphological analyses, together with estimates of pollination success and experimental crosses, to assess whether floral isolation can shelter the species' genomes from genetic admixture on secondary contact. We found substantial genet...

Global warming not so harmful for all plants-response of holomycotrophic orchid species for the future climate change

Czech Academy of Sciences Publication Activity Database

Kolanowska, Marta; Kras, M.; Lipińska, M.; Mystkowska, K.; Szlachetko, D. L.; Naczk, A. M.

2017-01-01

Roč. 7, č. 1 (2017), č. článku 12704. ISSN 2045-2322 R&D Projects: GA ČR GB14-36098G Institutional support: RVO:86652079 Keywords : global warming * Orchids * climate change Subject RIV: EH - Ecology, Behaviour OBOR OECD: Environmental sciences (social aspects to be 5.7) Impact factor: 4.259, year: 2016

ORCHIDS: an Observational Randomized Controlled Trial on Childhood Differential Susceptibility

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Chhangur Rabia R

2012-10-01

Full Text Available Abstract Background A central tenet in developmental psychopathology is that childhood rearing experiences have a major impact on children’s development. Recently, candidate genes have been identified that may cause children to be differentially susceptible to these experiences (i.e., susceptibility genes. However, our understanding of the differential impact of parenting is limited at best. Specifically, more experimental research is needed. The ORCHIDS study will investigate gene-(gene-environment interactions to obtain more insight into a moderating effects of polymorphisms on the link between parenting and child behavior, and b behavioral mechanisms that underlie these gene-(gene-environment interactions in an experimental design. Methods/Design The ORCHIDS study is a randomized controlled trial, in which the environment will be manipulated with an intervention (i.e., Incredible Years parent training. In a screening, families with children aged 4–8 who show mild to (subclinical behavior problems will be targeted through community records via two Dutch regional healthcare organizations. Assessments in both the intervention and control condition will be conducted at baseline (i.e., pretest, after 6 months (i.e., posttest, and after 10 months (i.e., follow-up. Discussion This study protocol describes the design of a randomized controlled trial that investigates gene-(gene-environment interactions in the development of child behavior. Two hypotheses will be tested. First, we expect that children in the intervention condition who carry one or more susceptibility genes will show significantly lower levels of problem behavior and higher levels of prosocial behavior after their parent(s received the Incredible Years training, compared to children without these genes, or children in the control group. Second, we expect that children carrying one or more susceptibility genes will show a heightened sensitivity to changes in parenting behaviors, and

Species distribution modelling for conservation of an endangered endemic orchid.

Science.gov (United States)

Wang, Hsiao-Hsuan; Wonkka, Carissa L; Treglia, Michael L; Grant, William E; Smeins, Fred E; Rogers, William E

2015-04-21

Concerns regarding the long-term viability of threatened and endangered plant species are increasingly warranted given the potential impacts of climate change and habitat fragmentation on unstable and isolated populations. Orchidaceae is the largest and most diverse family of flowering plants, but it is currently facing unprecedented risks of extinction. Despite substantial conservation emphasis on rare orchids, populations continue to decline. Spiranthes parksii (Navasota ladies' tresses) is a federally and state-listed endangered terrestrial orchid endemic to central Texas. Hence, we aimed to identify potential factors influencing the distribution of the species, quantify the relative importance of each factor and determine suitable habitat for future surveys and targeted conservation efforts. We analysed several geo-referenced variables describing climatic conditions and landscape features to identify potential factors influencing the likelihood of occurrence of S. parksii using boosted regression trees. Our model classified 97 % of the cells correctly with regard to species presence and absence, and indicated that probability of existence was correlated with climatic conditions and landscape features. The most influential variables were mean annual precipitation, mean elevation, mean annual minimum temperature and mean annual maximum temperature. The most likely suitable range for S. parksii was the eastern portions of Leon and Madison Counties, the southern portion of Brazos County, a portion of northern Grimes County and along the borders between Burleson and Washington Counties. Our model can assist in the development of an integrated conservation strategy through: (i) focussing future survey and research efforts on areas with a high likelihood of occurrence, (ii) aiding in selection of areas for conservation and restoration and (iii) framing future research questions including those necessary for predicting responses to climate change. Our model could also

Review of the New World Tigava lace bug complex (Hemiptera: Heteroptera: Tingidae), with the description of two new genera and two new species and a key to genera

Science.gov (United States)

The lace bug (Tingidae) genera belonging to the New World Tigava complex are reviewed. The two new genera and new species Mexicotingis brailovskyi, from Mexico, and Paraceratotingis convergens, from Venezuela, are described. Diagnoses, descriptions, and digital color photographs of the new taxa, d...

A key to the Mexican and Central America Genera of Anthonomini (Curculionidae, Curculioninae)

Science.gov (United States)

Hernández, Macotulio Soto; Jones, Robert W.; Castillo, Pedro Reyes

2013-01-01

Abstract Presently the only keys available for identification of genera of Anthonomini are limited to those of the United States of America and Canada. A dichotomous key is presented to identify all genera of Mexican and Central American Anthonomini. Previous keys do not include the genera Achia, Botanebius, Loncophorus, Loncophorellus and Melexerus. A brief synopsis is given for each genus and photographs of representative species are included. PMID:23717181

Total fatty acid composition in the characterization and identification of orchid mycorrhizal fungi Epulorhiza spp.

Directory of Open Access Journals (Sweden)

Marlon Corrêa Pereira

2011-08-01

Full Text Available Rhizoctonia-like fungi are the main mycorrhizal fungi in orchid roots. Morphological characterization and analysis of conserved sequences of genomic DNA are frequently employed in the identification and study of fungi diversity. However, phytopathogenic Rhizoctonia-like fungi have been reliably and accurately characterized and identified through the examination of the fatty acid composition. To evaluate the efficacy of fatty acid composition in characterizing and identifying Rhizoctonia-like mycorrhizal fungi in orchids, three Epulorhiza spp. mycorrhizal fungi from Epidendrum secundum, two unidentified fungi isolated from Epidendrum denticulatum, and a phytopathogenic fungus, Ceratorhiza sp. AGC, were grouped based on the profile of their fatty acids, which was assessed by the Euclidian and Mahalanobis distances and the UPGMA method. Dendrograms distinguished the phytopathogenical isolate of Ceratorhiza sp. AGC from the mycorrhizal fungi studied. The symbionts of E. secundum were grouped into two clades, one containing Epulorhiza sp.1 isolates and the other the Epulorhiza sp.2 isolate. The similarity between the symbionts of E. denticulatum and Epulorhiza spp. fungi suggests that symbionts found in E. denticulatum may be identified as Epulorhiza. These results were corroborated by the analysis of the rDNA ITS region. The dendrogram constructed based on the Mahalanobis distance differentiated the clades most clearly. Fatty acid composition analysis proved to be a useful tool for characterizing and identifying Rhizoctonia-like mycorrhizal fungi.

Conspectus of the genera Amylotheca, Cyne, Decaisnina, Lampas, Lepeostegeres, and Loxanthera (Loranthaceae)

NARCIS (Netherlands)

Barlow, Bryan A.

1993-01-01

The Australasian/Malesian group of genera Amylotheca, Cyne, Decaisnina, Lampas, Lepeostegeres and Loxanthera is reviewed. Particular attention is given to the species of the Malesian region, as a precursor to a treatment of Loranthaceae for Flora Malesiana. The genera are part of a floristic element

The Doryctinae (Braconidae) of Costa Rica: genera and species of the tribe Heterospilini

OpenAIRE

Marsh, Paul; Wild, Alexander; Whitfield, James

2013-01-01

Abstract A comprehensive taxonomic study is presented for the four genera and 286 species of the doryctine tribe Heterospilini occurring in Costa Rica. The tribe is represented almost entirely by the 280 species of the genus Heterospilus Haliday. Keys for identification of the genera and species are provided and the genera and species are described and illustrated. An interactive key to the species of Heterospilus also was prepared using Lucid Builder. The following new genus and species are ...

INVENTARISASI KEANEKARAGAMAN ANGGREK (Orchidaceae DI HUTAN RESORT WAY KANAN BALAI AMAN NASIONAL WAY KAMBAS SEBAGAI SUMBER INFORMASI DALAM MELESTARIKAN PLASMA NUTFAH

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Dwi Agustin Hening Widowati

2015-10-01

Full Text Available Abstract:  Orchid is one of the plants that have different characteristics in each species and its habitat. Orchids (Orchidaceae or nation is a group that is protected by Government Regulations  Number. 7 Th.1999. It is necessary to look at the type of data collections and save it, and look at the characteristics of tropical forests in the Resort Way Kanan. This research aims to inventory orchid the found in Forest Resort of Way Kanan. This research was conducted in December 2014 until January 2015, using purposive sampling method and using techniques Line transeck, cut the line following the path of the Post traking Right Way to the SRS (Sumatran Rhino Sanctuary, in this research using 4 stations between stations within 2km. The results of this study were obtained 23 species of orchids with 9 genera and 14 species include: the genus Dendrobium, Dendrobium creatceum, Dendrobium crumenatum, genus Grammatophyllum, Grammatophyllum scriptum BL, Agrostophyllum genus, the genus Cymbidium, Cymbidium chloranthum, Cymbidium hartinahianum, Calanthe genus, the genus Bulbophyllum, Arachnis sp, Angraecum didieri, Ascocentrum miniatum, Ascocentrum aureum, Coelogyne foerstermanni, golden shower Oncidium, Phalaenopsis amabilis, Spathoglottis sp. Having analyzed the data obtained it has a value equal to 46% of species density and relative density of 88.36% with a diversity index value of 1.3, based on the criteria of the Shannon-Wienner in Fachrul abundant species diversity can be expressed with the criteria being. The results of this study compiled into resources in conserving germplasm in the form of books and banner summary information, because there are some orchids are found in Forest Resort Way Kanan Balai Way Kambas National Park in Government Regulations  Number. 7 Th.1999 is a protected species of orchids. Orchid is a protected plant species, therefore it is necessary for us to maintain and preserve it.

New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera)

NARCIS (Netherlands)

Nieukerken, van E.J.; Doorenweerd, C.; Nishida, K.; Snyers, C.

2016-01-01

After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new

Evidence of Possible Evolutionary Divergence in Plant Genera Based on Antioxidant Properties

Science.gov (United States)

Asai, Elizabeth; Cao, Sharon

2009-01-01

The purpose of this investigation was to determine if three Western species of the Panax, Lycium, and Astragalus genera had antibacterial and/or antioxidant properties, and how their properties compared to Eastern herbs in the same genera. The group hypothesized that when compared, the corresponding herbs would have identical antibacterial and…

A novel technique for determination of the fructose, glucose and sucrose distribution in nectar from orchids by HPLC-ELSD

DEFF Research Database (Denmark)

Lindqvist, Dan Nybro; Pedersen, Henrik Ærenlund; Rasmussen, Lars Holm

2018-01-01

method for sugar characterization of nectar from orchids. Nectar was collected on Whatman No. 1 paper and preserved in the field by 70 v/v% ethanol. The analytical method had a linear range up to at least 3000 mg L−1 for all 3 sugars with a precision of 1.5–1.7%. Correlation coefficients were 0.9999 to 1...

A pictorial key and diagnosis of the Brazilian genera of Micropezidae (Diptera, Nerioidea

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Gustavo Borges Ferro

2014-03-01

Full Text Available A pictorial key and diagnosis of the Brazilian genera of Micropezidae (Diptera, Nerioidea. This paper provides the first pictorial key and diagnosis for the Brazilian genera of the Micropezidae, based on external morphological characters illustrated with photographs. The key includes 13 genera: Cardiacephala Macquart, Cliobata Enderlein, Grallipeza Rondani, Metasphen Frey, Micropeza Meigen, Parasphen Enderlein, Planipeza Marshall, Plocoscelus Enderlein, Poecilotylus Hennig, Ptilosphen Enderlein, Rainieria Rondani, Scipopus Enderlein and Taeniaptera Macquart. For each genus, the species known to occur in Brazil are listed and their distribution records, including new ones, are provided.

[Visitation of orchid by Melipona capixaba Moure & Camargo (Hymenoptera: Apidae), bee threatened with extinction].

Science.gov (United States)

Resende, Helder C; Barros, Fábio de; Campos, Lúcio A O; Fernandes-Salomão, Tânia M

2008-01-01

The stingless bee Melipona capixaba Moure & Camargo is a species restricted to the Atlantic forest in the Domingos Martins, Conceição do Castelo, Venda Nova do Imigrante and Afonso Cláudio County, in the Espírito Santo State, Brazil. Despite its cological importance as pollinator few studies have examined the ecology and biology of this bee. This note relates a case of the M. capixaba workers carrying pollinarium attached to the scuttellum. The pollinaria were identified as belonging to the orchid subtribe Maxillariinae species possibly of the genus Maxillaria sensu lato or Xylobium.

The Influence of Coconut Water and Activated Charcoal in MS Medium on In Vitro Callus Regeneration of Dendrobium sp. Cultivar Bertha Chong Orchids

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Dessi Novita Sari

2015-09-01

Full Text Available Dendrobium is one of the most commercial orchids. In Vitro technique is one of solution to fulfill the market demand of Dendrobium. Organic matters, such as coconut water, and activated charcoal are often given to in vitro medium to regenerate orchids callus. The addition of activated charcoal is not only adsorbing toxic substances but also organic matters. The aimof this researchistofindthe best combination for callus regeneration medium. The research was conducted at the Biological Cell and Molecular Laboratory, Mathematics and Natural Science Faculty of Syiah Kuala University, Darussalam, Banda Aceh since March to November 2013. The method used is experimental with Completely Randomized Factorial Design with two factor; treatments of coconut water and activated charcoal. The result showed that the combinationof 150mL/Lcoconut waterand2,0g/Lactivated charcoal is the best resultbecauseit is the onlytreatment that have capability in producingplantletswithin60days.

Twining genera of (0,4) supersymmetric sigma models on K3

International Nuclear Information System (INIS)

Harrison, Sarah; Kachru, Shamit; Paquette, Natalie M.

2014-01-01

Conformal field theories with (0,4) worldsheet supersymmetry and K3 target can be used to compactify the E 8 ×E 8 heterotic string to six dimensions in a supersymmetric manner. The data specifying such a model includes an appropriate configuration of 24 gauge instantons in the E 8 ×E 8 gauge group to satisfy the constraints of anomaly cancellation. In this note, we compute twining genera — elliptic genera with appropriate insertions of discrete symmetry generators in the trace — for (0,4) theories with various instanton embeddings. We do this by constructing linear sigma models which flow to the desired conformal field theories, and using the techniques of localization. We present several examples of such twining genera which are consistent with a moonshine relating these (0,4) models to the finite simple sporadic group M 24

Least speciose among the most speciose: Natural history correlates of monospecific and bispecific genera of Rodentia and Soricomorpha.

Science.gov (United States)

Amori, Giovanni; Bissattini, Alessandra Maria; Gippoliti, Spartaco; Vignoli, Leonardo; Maiorano, Luigi; Luiselli, Luca

2017-11-01

Monospecific and bispecific genera are of special concern as they represent unique phylogenetic/evolutionary trajectories within larger clades. In addition, as phylogenetically older taxa are supposed to be exposed to higher rarity and extinction risk, monospecific and bispecific genera may be intrinsically more prone to extinction risks than multispecies genera, although extinction risks also depend on the ecological and biological strategy of the species. Here, the distribution across biogeographical zones and the levels of threat to 2 speciose orders of mammals (monospecific and bispecific genera of Rodentia and Soricomorpha) are investigated in order to highlight major patterns at the worldwide scale. In Rodentia, 39.7% of the genera (n = 490) were monospecific and 17.9% were bispecific. In Soricomorpha, 44.4% of the total genera (n = 45) were monospecific and 15% were bispecific. There was a positive correlation between the number of monospecific genera and the total number of genera per family. Peaks of monospecific and bispecific genera richness were observed in Neotropical, Oriental and Afrotropical regions in rodents and in the Palearctic region in soricomorphs. Range size was significantly uneven across biogeographic region in rodents (with larger ranges in Nearctic and Oriental regions and smaller ranges in the Australian region), but there was no difference across biogeographic regions in terms of range size in soricomorphs. Most of the monospecific and bispecific genera occurred in forest habitat in both taxa. The frequency distribution of the monospecific and bispecific genera across IUCN categories did not differ significantly from the expected pattern using the total rodent genera and the multispecies genera. © 2017 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Draft Genome Sequences of Dickeya sp. Isolates B16 (NIB Z 2098) and S1 (NIB Z 2099) Causing Soft Rot of Phalaenopsis Orchids.

Science.gov (United States)

Alič, Špela; Naglič, Tina; Llop, Pablo; Toplak, Nataša; Koren, Simon; Ravnikar, Maja; Dreo, Tanja

2015-09-10

The genus Dickeya contains bacteria causing soft rot of economically important crops and ornamental plants. Here, we report the draft genome sequences of two Dickeya sp. isolates from rotted leaves of Phalaenopsis orchids. Copyright © 2015 Alič et al.

Comparison between two genera, species and cultivars in Lactuceae, (3)

International Nuclear Information System (INIS)

Haque, M.Z.; Godward, M.B.E.

1986-01-01

Estimation of DNA amounts (in arbitrary units) in two genera, two species, and three cultivars of one species, permits comparison between them and indicates that the biggest difference is between the two genera, Lactuca and Cichorium; but that the difference between the cultivars of Lactuca sativa is greater than the difference between Lactuca serriola and the mean for Lactuca sativa. Lactuca serriola is a presumed ancestor of Lactuca sativa. The most radiosensitive species, L. serriola, has slightly less DNA and smaller nuclear volume than the next most sensitive, L. sativa cult. Cos. This is discussed. (author)

Global diversity and phylogeny of pelagic shrimps of the former genera Sergestes and Sergia (Crustacea, Dendrobranchiata, Sergestidae), with definition of eight new genera

DEFF Research Database (Denmark)

Vereshchaka, Alexander L.; Olesen, Jørgen; Lunina, Anastasia A.

2014-01-01

, Phorcosergia, Prehensilosergia, Robustosergia, Scintillosergia, Challengerosergia, and Lucensosergia) and seven genera of the former genus Sergestes (Sergestes, Deosergestes, Eusergestes, Allosergestes, Parasergestes, Neosergestes, and a new genus Cornutosergestes). An identification key is presented for all...... genera of the family Sergestidae. The phylogeny of Sergestidae is mainly based on three categories of characters related to: (1) general decapod morphology, (2) male copulatory organs, and (3) photophores. Only simultaneous use of all three character types resulted in a resolved tree with minimal...

Phylogenetic Relationships of Five Asian Schilbid Genera Including Clupisoma (Siluriformes: Schilbeidae.

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Jing Wang

Full Text Available The phylogenetic relationships of Asian schilbid catfishes of the genera Clupisoma, Ailia, Horabagrus, Laides and Pseudeutropius are poorly understood, especially those of Clupisoma. Herein, we reconstruct the phylogeny of 38 species of catfishes belonging to 28 genera and 14 families using the concatenated mitochondrial genes COI, cytb, and 16S rRNA, as well as the nuclear genes RAG1 and RAG2. The resulting phylogenetic trees consistently place Clupisoma as the sister taxon of Laides, and the five representative Asian schilbid genera form two monophyletic groups with the relationships (Ailia (Laides, Clupisoma and (Horabagrus, Pseudeutropius. The so-called "Big Asia" lineage relates distantly to African schilbids. Independent analyses of the mitochondrial and nuclear DNA data yield differing trees for the two Asian schilbid groups. Analyses of the mitochondrial gene data support a sister-group relationship for (Ailia (Laides, Clupisoma and the Sisoroidea and a sister-taxon association of (Horabagrus, Pseudeutropius and the Bagridae. In contrast, analyses of the combined nuclear data indicate (Ailia (Laides, Clupisoma to be the sister group to (Horabagrus, Pseudeutropius. Our results indicate that the Horabagridae, recognized by some authors as consisting of Horabagrus, Pseudeutropius and Clupisoma does not include the latter genus. We formally erect a new family, Ailiidae fam. nov. for a monophyletic Asian group comprised of the genera Ailia, Laides and Clupisoma.

Redefining Ceratocystis and allied genera

Science.gov (United States)

de Beer, Z.W.; Duong, T.A.; Barnes, I.; Wingfield, B.D.; Wingfield, M.J.

2014-01-01

The genus Ceratocystis was established in 1890 and accommodates many important fungi. These include serious plant pathogens, significant insect symbionts and agents of timber degradation that result in substantial economic losses. Virtually since its type was described from sweet potatoes, the taxonomy of Ceratocystis has been confused and vigorously debated. In recent years, particulary during the last two decades, it has become very obvious that this genus includes a wide diversity of very different fungi. These have been roughly lumped together due to their similar morphological structures that have clearly evolved through convergent evolution linked to an insect-associated ecology. As has been true for many other groups of fungi, the emergence of DNA-based sequence data and associated phylogenetic inferences, have made it possible to robustly support very distinct boundaries defined by morphological characters and ecological differences. In this study, DNA-sequence data for three carefully selected gene regions (60S, LSU, MCM7) were generated for 79 species residing in the aggregate genus Ceratocystis sensu lato and these data were subjected to rigorous phylogenetic analyses. The results made it possible to distinguish seven major groups for which generic names have been chosen and descriptions either provided or emended. The emended genera included Ceratocystis sensu stricto, Chalaropsis, Endoconidiophora, Thielaviopsis, and Ambrosiella, while two new genera, Davidsoniella and Huntiella, were described. In total, 30 new combinations have been made. This major revision of the generic boundaries in the Ceratocystidaceae will simplify future treatments and work with an important group of fungi including distantly related species illogically aggregated under a single name. PMID:25492989

Using In Situ Symbiotic Seed Germination to Restore Over-collected Medicinal Orchids in Southwest China

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Shi-Cheng Shao

2017-06-01

Full Text Available Due to increasing demand for medicinal and horticultural uses, the Orchidaceae is in urgent need of innovative and novel propagation techniques that address both market demand and conservation. Traditionally, restoration techniques have been centered on ex situ asymbiotic or symbiotic seed germination techniques that are not cost-effective, have limited genetic potential and often result in low survival rates in the field. Here, we propose a novel in situ advanced restoration-friendly program for the endangered epiphytic orchid species Dendrobium devonianum, in which a series of in situ symbiotic seed germination trials base on conspecific fungal isolates were conducted at two sites in Yunnan Province, China. We found that percentage germination varied among treatments and locations; control treatments (no inoculum did not germinate at both sites. We found that the optimal treatment, having the highest in situ seed germination rate (0.94-1.44% with no significant variation among sites, supported a warm, moist and fixed site that allowed for light penetration. When accounting for seed density, percentage germination was highest (2.78-2.35% at low densities and did not vary among locations for the treatment that supported optimal conditions. Similarly for the same treatment, seed germination ranged from 0.24 to 5.87% among seasons but also did vary among sites. This study reports on the cultivation and restoration of an endangered epiphytic orchid species by in situ symbiotic seed germination and is likely to have broad application to the horticulture and conservation of the Orchidaceae.

Using In Situ Symbiotic Seed Germination to Restore Over-collected Medicinal Orchids in Southwest China.

Science.gov (United States)

Shao, Shi-Cheng; Burgess, Kevin S; Cruse-Sanders, Jennifer M; Liu, Qiang; Fan, Xu-Li; Huang, Hui; Gao, Jiang-Yun

2017-01-01

Due to increasing demand for medicinal and horticultural uses, the Orchidaceae is in urgent need of innovative and novel propagation techniques that address both market demand and conservation. Traditionally, restoration techniques have been centered on ex situ asymbiotic or symbiotic seed germination techniques that are not cost-effective, have limited genetic potential and often result in low survival rates in the field. Here, we propose a novel in situ advanced restoration-friendly program for the endangered epiphytic orchid species Dendrobium devonianum , in which a series of in situ symbiotic seed germination trials base on conspecific fungal isolates were conducted at two sites in Yunnan Province, China. We found that percentage germination varied among treatments and locations; control treatments (no inoculum) did not germinate at both sites. We found that the optimal treatment, having the highest in situ seed germination rate (0.94-1.44%) with no significant variation among sites, supported a warm, moist and fixed site that allowed for light penetration. When accounting for seed density, percentage germination was highest (2.78-2.35%) at low densities and did not vary among locations for the treatment that supported optimal conditions. Similarly for the same treatment, seed germination ranged from 0.24 to 5.87% among seasons but also did vary among sites. This study reports on the cultivation and restoration of an endangered epiphytic orchid species by in situ symbiotic seed germination and is likely to have broad application to the horticulture and conservation of the Orchidaceae.

Applicability of ISSR and DAMD markers for phyto-molecular characterization and association with some important biochemical traits of Dendrobium nobile, an endangered medicinal orchid.

Science.gov (United States)

Bhattacharyya, Paromik; Kumaria, Suman; Tandon, Pramod

2015-09-01

Dendrobium nobile is an important medicinal orchid having profound importance in traditional herbal drug preparations and pharmacopeias worldwide. Due to various anthropogenic pressures the natural populations of this important orchid species are presently facing threats of extinction. In the present study, genetic and chemical diversity existing amongst 6 natural populations of D. nobile were assessed using molecular markers, and the influence of genetic factors on its phytochemical activity especially antioxidant potential was determined. Molecular fingerprinting of the orchid taxa was performed using ISSR and DAMD markers along with the estimation of total phenolics, flavonoids and alkaloid contents. Antioxidant activity was also measured using DPPH and FRAP assays which cumulatively revealed a significant level of variability across the sampled populations. The representatives from Sikkim in Northeast India revealed higher phytochemical activity whereas those from Mizoram showed lesser activity. Analysis of molecular variance (AMOVA) revealed that variation amongst the populations was significantly higher than within the populations. The data generated by UPGMA and Bayesian analytical models were compared in order to estimate the genetic relationships amongst the D. nobile germplasm sampled from different geographical areas of Northeast India. Interestingly, identical grouping patterns were exhibited by both the approaches. The results of the present study detected a high degree of existing genetic and phytochemical variation amongst the populations in relation to bioclimatic and geographic locations of populations. Our results strongly establish that the cumulative marker approach could be the best suited for assessing the genetic relationships with high accuracy amongst distinct D. nobile accessions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Comparative molecular cytogenetics of major repetitive sequence families of three Dendrobium species (Orchidaceae) from Bangladesh

Science.gov (United States)

Begum, Rabeya; Alam, Sheikh Shamimul; Menzel, Gerhard; Schmidt, Thomas

2009-01-01

Background and Aims Dendrobium species show tremendous morphological diversity and have broad geographical distribution. As repetitive sequence analysis is a useful tool to investigate the evolution of chromosomes and genomes, the aim of the present study was the characterization of repetitive sequences from Dendrobium moschatum for comparative molecular and cytogenetic studies in the related species Dendrobium aphyllum, Dendrobium aggregatum and representatives from other orchid genera. Methods In order to isolate highly repetitive sequences, a c0t-1 DNA plasmid library was established. Repeats were sequenced and used as probes for Southern hybridization. Sequence divergence was analysed using bioinformatic tools. Repetitive sequences were localized along orchid chromosomes by fluorescence in situ hybridization (FISH). Key Results Characterization of the c0t-1 library resulted in the detection of repetitive sequences including the (GA)n dinucleotide DmoO11, numerous Arabidopsis-like telomeric repeats and the highly amplified dispersed repeat DmoF14. The DmoF14 repeat is conserved in six Dendrobium species but diversified in representative species of three other orchid genera. FISH analyses showed the genome-wide distribution of DmoF14 in D. moschatum, D. aphyllum and D. aggregatum. Hybridization with the telomeric repeats demonstrated Arabidopsis-like telomeres at the chromosome ends of Dendrobium species. However, FISH using the telomeric probe revealed two pairs of chromosomes with strong intercalary signals in D. aphyllum. FISH showed the terminal position of 5S and 18S–5·8S–25S rRNA genes and a characteristic number of rDNA sites in the three Dendrobium species. Conclusions The repeated sequences isolated from D. moschatum c0t-1 DNA constitute major DNA families of the D. moschatum, D. aphyllum and D. aggregatum genomes with DmoF14 representing an ancient component of orchid genomes. Large intercalary telomere-like arrays suggest chromosomal

A preliminary list of bee genera in the Kingdom of Saudi Arabia (Hymenoptera: Apoidea

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Michael S. Engel

2013-01-01

Full Text Available A brief overview of those bee genera and subgenera occurring in the Kingdom of Saudi Arabia is provided. In total 22 genera are currently documented in the literature for the country, although a further 17 genera undoubtedly occur here based on extralimital records. The lists provided here will serve as a baseline for biodiversity studies on the bee fauna of the country that are presently underway. The anthidiine genus Icteranthidium Michener (Megachilidae and the dasypodaine genus Promelitta Warncke (Melittidae are newly recorded for the country.

Redefinition of the genera Malaxis Sol. ex Sw. and Microstylis (Nutt. Eaton (Orchidaceae, Epidendroideae

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Dariusz L. Szlachetko

2011-01-01

Full Text Available A new definition of the genera Malaxis Sol. ex Sw. and Microstylis (Nutt. Eaton is presented. The genera are briefly described and illustrated. A list of Microstylis species is added. Four new nomenclatural combinations are proposed.

Pollen morphology within the Monodora clade, a diverse group of five African Annonaceae genera

NARCIS (Netherlands)

Couvreur, T.L.P.; Botermans, M.; Heuven, Van B.J.; Ham, van der R.W.J.M.

2008-01-01

Pollen morphology has played a major role in elucidating infrafamiliar-level systematics and evolution within Annonaceae, especially within the African genera. The Monodora clade is composed of five genera, Asteranthe, Hexalobus, Isolona, Monodora and Uvariastrum, which are restricted to Africa and

Notes on the systematics of the orchid-bee genus Eulaema (Hymenoptera, Apidae

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Gabriel A. R. Melo

2014-09-01

Full Text Available Notes on the systematics of the orchid-bee genus Eulaema (Hymenoptera, Apidae. The classification of the genus Eulaema is modified in order to make it congruent with recent phylogenetic hypotheses based on molecular data. The speciosa group, containing E. peruviana, E. speciosa and related species, is removed from E. (Eulaema and transferred to E. (Apeulaema. New morphological characters are presented to support the revised scope of the subgenera and their diagnostic features are revised. Six species groups are recognized herein: two in E. (Apeulaema and four in E. (Eulaema. A list of valid species in each species group and an identification key to males of each of the subgenera and species groups are provided. Finally, an older overlooked designation of a type species for Eulaema is presented in the Appendix.

Cannibals and Orchids: Cannibalism and the Sensory Imagination of Papua New Guinea

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Ilaria Vanni

2011-11-01

Full Text Available This article examines Leona Miller’s book Cannibal and Orchids (1941 as an example of how place, in this case Papua New Guinea (PNG, is imagined according to a particular sensorium. It follows the ‘sensory turn in anthropology’ and the studies developed in the last two decades that take the senses as their object of enquiry. This body of theory is mobilised to analyse Miller’s biographical narrative recounting how PNG is imagined, represented and produced in terms of a disarray of the (Western senses, coalescing in the trope of cannibalism. This article argues that the experience of PNG as the place of otherness is narrated both in terms of the author’s sensory displacement and of the indigenous sensorium as abject.

Protocols for In Vitro Mass Multiplication and Analysis of Medicinally Important Phenolics of a Salep Orchid, Satyrium nepalense D.Don ("Salam Mishri").

Science.gov (United States)

Babbar, Shashi B; Singh, Deepak K

2016-01-01

Satyrium nepalense is a rare and threatened medicinal orchid, populations of which in its native habitats are dwindling because of indiscriminate collections and habitat destruction, thus necessitating the development of methods for its in situ and ex situ conservation. Because of non-endospermous nature of the seeds and the immature embryos at seed dispersal stage, orchids cannot be seed-propagated as other plants. Micropropagation, using plant tissue culture techniques, offers an effective method for the multiplication of orchids. In this chapter, a five-step efficient reproducible protocol for large-scale in vitro multiplication of Satyrium nepalense is described. The first step involves asymbiotic germination of seeds isolated from immature green pods and cultured on Mitra's medium (M) gelled with 0.8 % agar and supplemented with 2 % sucrose and 1 % peptone (hereafter referred to as basal medium, BM). On this medium, seeds start germinating after a week of culture. Protocorms developed from the seeds are sub-cultured on BM fortified with 4 μM kinetin (Kn) after 8 weeks, for shoot differentiation and multiplication. The shoots developed on Kn-supplemented medium are transferred to BM alone for their elongation for the same period. The elongated shoots are transferred to the rooting medium, comprising BM supplemented with 0.5 or 1.0 μM indole-3-butyric acid, for further 8 weeks. The regenerated plantlets are transferred to a potting mix of sand and vermiculite (1:1) for acclimatization. The tubers and leaves excised from both in vitro-developed plants and those from their native habitats are analyzed and compared for the contents and concentration of medicinally important phenolics using high-performance liquid chromatography (HPLC), details of which are provided in this chapter.

Germinación simbiótica y asimbiótica en semillas de orquídeas epifitas Symbiotic vs. asymbiotic seed germination in epiphytic orchids

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Joel Tupac Otero Ospina

2009-10-01

Full Text Available Se compara el crecimiento de plántulas de la orquídeas epifita Tolumnia variegata en medios de agar con y sin hongos micorrízicos. Los métodos de germinación simbiótica produjeron embriones de T. variegata más desarrollados que los métodos de germinación asimbiótica y las diferencias fueron estadísticamente significativas. Las semillas en los controles en medio de celulosa sin hongos micorrízicos no germinaron. Las semillas de Epidendrum ramosum, Lepanthes rupestris y Psychilis monensis no mostraron diferencias significativas en germinación entre métodos simbiótica y asimbiótica utilizando hongos aislados de raíces de T. variegata, incluso algunos aislados del grupo Rhizoctonia parasitaron las semillas. Los resultados sugieren que las semillas de orquídeas epifitas y sus hongos micorrízicos son más específicos de lo que anteriormente se había creído y por tanto es necesario utilizar los hongos específicos para cada especie de orquídea. Además, se sugiere que los cultivadores de orquídeas podrían obtener mejores resultados en la propagación de orquídeas epifitas si utilizan metodologías de germinación simbiótica apropiados.We compared seedling growth of the epiphytic orchid, Tolumnia variegata in agar media with and without inoculated mycorrhizal fungi. Symbiotic germination produced more-developed embryos than asymbiotic germination. Differences were highly significant, although some isolates of Rhizoctonia-like fungi were parasitic on seeds. Control seeds in a cellulose medium without Rhizoctonia-like fungi did not germinate. Seeds of Epidendrum ramosum, Lepanthes rupestris and Psychilis monensis showed no significant differences between asymbiotic and symbiotic germination using mycorrhizal fungi isolated from T. variegata roots, suggesting high mycorrhizal specificity. Our data suggest that the relationship between epiphytic orchids and the mycorrhizal fungi is more specific than previously thought. The use of

SYSTEMATIC REVISION OF THE GENERA OF PANGASIIDAE (SILURIFORMES, OSTARIOPHYSI

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Rudhy Gustiano

2008-06-01

Full Text Available The family Pangasiidae belongs to the suborder Siluroidei, order Siluriformes, and suborder Ostariophysi. Since the groups were established as Pangasiini Bleeker, 1858; its content and classification have been greatly changed. Judging from the literature, the main constraint to cultivate wild species and to optimize the production of cultured species is needed to the poorly documented systematics of this family. Therefore the objective of the present study is to provide the diagnostic characters and the keys for identification the genera of Pangasiidae. The results clearly demonstrate that biometrically four natural groups can be distinguished. They are the genus Helicophagus, Pangasianodon, Pteropangasius, and Pangasius. The diagnosis of the family, the identification key of the genera and the description are given.

Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera

DEFF Research Database (Denmark)

Lukjancenko, Oksana; Ussery, David; Wassenaar, Trudy M.

2012-01-01

Six bacterial genera containing species commonly used as probiotics for human consumption or starter cultures for food fermentation were compared and contrasted, based on publicly available complete genome sequences. The analysis included 19 Bifidobacterium genomes, 21 Lactobacillus genomes, 4...... Lactococcus and 3 Leuconostoc genomes, as well as a selection of Enterococcus (11) and Streptococcus (23) genomes. The latter two genera included genomes from probiotic or commensal as well as pathogenic organisms to investigate if their non-pathogenic members shared more genes with the other probiotic......- and core genome of each genus were compared. In addition, it was investigated whether pathogenic genomes contain different COG classes compared to the probiotic or fermentative organisms, again comparing their pan- and core genomes. The obtained results were compared with published data from the literature...

Minimal genera of open 4-manifolds

OpenAIRE

Gompf, Robert E.

2013-01-01

We study exotic smoothings of open 4-manifolds using the minimal genus function and its analog for end homology. While traditional techniques in open 4-manifold smoothing theory give no control of minimal genera, we make progress by using the adjunction inequality for Stein surfaces. Smoothings can be constructed with much more control of these genus functions than the compact setting seems to allow. As an application, we expand the range of 4-manifolds known to have exotic smoothings (up to ...

Review of the genera Stenopyrgota Malloch and Tropidothrinax Enderlein (Diptera, Pyrgotidae

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Ramon Luciano Mello

2014-03-01

Full Text Available Review of the genera Stenopyrgota Malloch and Tropidothrinax Enderlein (Diptera, Pyrgotidae. The Neotropical genera Stenopyrgota Malloch, 1929 and Tropidothrinax Enderlein, 1942 are reviewed. The genus Stenopyrgota is composed by the species S. mexicana Malloch, 1929 and S. crassitibia Aczél, 1956. The monotypic genus Tropidothrinax is composed by the species T. boliviensis Enderlein, 1942. The species of Stenopyrgota and Tropidothrinax are redescribed and illustrations of the main taxonomic characters are given. Illustrations of the type material of the species covered by this paper are presented for the first time.

Genera of euophryine jumping spiders (Araneae: Salticidae), with a combined molecular-morphological phylogeny.

Science.gov (United States)

Zhang, Junxia; Maddison, Wayne P

2015-03-27

Morphological traits of euophryine jumping spiders were studied to clarify generic limits in the Euophryinae and to permit phylogenetic classification of genera lacking molecular data. One hundred and eight genera are recognized within the subfamily. Euophryine generic groups and the delimitation of some genera are reviewed in detail. In order to explore the effect of adding formal morphological data to previous molecular phylogenetic studies, and to find morphological synapomorphies, eighty-two morphological characters were scored for 203 euophryine species and seven outgroup species. The morphological dataset does not perform as well as the molecular dataset (genes 28S, Actin 5C; 16S-ND1, COI) in resolving the phylogeny of Euophryinae, probably because of frequent convergence and reversal. The formal morphological data were mapped on the phylogeny in order to seek synapomorphies, in hopes of extending the phylogeny to include taxa for which molecular data are not available. Because of homoplasy, few globally-applicable morphological synapomorphies for euophryine clades were found. However, synapomorphies that are unique locally in subclades still help to delimit euophryine generic groups and genera. The following synonyms of euophryine genera are proposed: Maeotella with Anasaitis; Dinattus with Corythalia; Paradecta with Compsodecta; Cobanus, Chloridusa and Wallaba with Sidusa; Tariona with Mopiopia; Nebridia with Amphidraus; Asaphobelis and Siloca with Coryphasia; Ocnotelus with Semnolius; Palpelius with Pristobaeus; Junxattus with Laufeia; Donoessus with Colyttus; Nicylla, Pselcis and Thianitara with Thiania. The new genus Saphrys is erected for misplaced species from southern South America.

Molecular phylogeny of Subtribe Artemisiinae (Asteraceae), including Artemisia and its allied and segregate genera

Science.gov (United States)

Watson, Linda E; Bates, Paul L; Evans, Timothy M; Unwin, Matthew M; Estes, James R

2002-01-01

Background Subtribe Artemisiinae of Tribe Anthemideae (Asteraceae) is composed of 18 largely Asian genera that include the sagebrushes and mugworts. The subtribe includes the large cosmopolitan, wind-pollinated genus Artemisia, as well as several smaller genera and Seriphidium, that altogether comprise the Artemisia-group. Circumscription and taxonomic boundaries of Artemisia and the placements of these small segregate genera is currently unresolved. Results We constructed a molecular phylogeny for the subtribe using the internal transcribed spacers (ITS) of nuclear ribosomal DNA analyzed with parsimony, likelihood, and Bayesian criteria. The resulting tree is comprised of three major clades that correspond to the radiate genera (e.g., Arctanthemum and Dendranthema), and two clades of Artemisia species. All three clades have allied and segregate genera embedded within each. Conclusions The data support a broad concept of Artemisia s.l. that includes Neopallasia, Crossostephium, Filifolium, Seriphidium, and Sphaeromeria. However, the phylogeny excludes Elachanthemum, Kaschgaria, and Stilnolepis from the Artemisia-group. Additionally, the monophyly of the four subgenera of Artemisia is also not supported, with the exception of subg. Dracunculus. Homogamous, discoid capitula appear to have arisen in parallel four to seven times, with the loss of ray florets. Thus capitular morphology is not a reliable taxonomic character, which traditionally has been one of the defining characters. PMID:12350234

Molecular phylogeny of Trametes and related genera based on ...

African Journals Online (AJOL)

use

2011-12-12

Dec 12, 2011 ... Some species of Trametes and their related genera are so similar in microstructure characteristics that it is ... We found that both the conserved domains and the variable domains all ..... closely-related species was similar.

Bathymetric preference of four major genera of rectilinear benthic ...

Indian Academy of Sciences (India)

(OMZ), both shallow marine (50–60 m water depth) and intermediate to deep water (150–1500 m water depth) ... depth differentiation among four rectilinear benthic foraminiferal genera presents the basic data for ..... in processing the samples.

Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul

Czech Academy of Sciences Publication Activity Database

Kolanowska, Marta; Mystkowska, K.; Kras, M.; Dudek, M.; Konowalik, K.

2016-01-01

Roč. 4, aug (2016), č. článku e2384. ISSN 2167-8359 R&D Projects: GA ČR GB14-36098G Institutional support: RVO:86652079 Keywords : phylogenetic analysis * niche models * diversification * asia * distributions * improve * guinea * origin * areas * Ecology * Orchids * Species distribution modeling * Climatic tolerance * Postglacial migration Subject RIV: EH - Ecology, Behaviour OBOR OECD: Environmental sciences (social aspects to be 5.7) Impact factor: 2.177, year: 2016

Correlations of Consumers, Leisure Motivation and Leisure Value with Leisure Benefits ─A Case Study on Taiwan International Orchid Show

OpenAIRE

Wu Yan

2013-01-01

This study aims to discuss the correlations of consumers’ Leisure Motivation and Leisure Value with Leisure Benefits. Leisure Motivation contains the dimensions of Intellectual Factor, Social Factor, Competence-Mastery, and Stimulus-Avoidance; and, Leisure Value covers Product Value, Service Value, and Experience Value. Visitors to Taiwan International Orchid Show are selected as the research samples for the questionnaire survey. Total 600 copies are distributed on site and 488 valid ones are...

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

KAUST Repository

Varsani, Arvind; Navas-Castillo, Jesú s; Moriones, Enrique; Herná ndez-Zepeda, Cecilia; Idris, Ali; Brown, Judith K.; Murilo Zerbini, F.; Martin, Darren Patrick

2014-01-01

The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

KAUST Repository

Varsani, Arvind

2014-03-22

The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

The genera Rhoptropus and Phelsuma (Reptilia: Gekkonidae) in ...

African Journals Online (AJOL)

The genus Rhoplropella Hewitt, 1937 is shown to be a junior synonym of Phelsuma Gray, 1825 and the genera Phelsumaand Rhoplropus Peters, 1869 are compared. It is pointed out that Phelsuma ocettata shows a great deal of convergence with Rhoplropus but that both of these forms exhibit their own distinctive derived ...

Privisional key to the genera of Loranthaceae and Viscaceae of the Flora Malesiana region

NARCIS (Netherlands)

Barlow, B.A.

1991-01-01

Precursor publications by the author are in press or in preparation prior to a treatment of the mistletoe families Loranthaceae and Viscaceae for the Flora Malesiana. The provisional keys to genera set out below is offered as an indication of the genera which are accepted for the region. Comments on

Overexpression of PaFT gene in the wild orchid Phalaenopsis amabilis (L.) Blume

Science.gov (United States)

Semiarti, Endang; Mercuriani, Ixora S.; Rizal, Rinaldi; Slamet, Agus; Utami, Bekti S.; Bestari, Ida A.; Aziz-Purwantoro, Moeljopawiro, S.; Jang, Soenghoe; Machida, Y.; Machida, C.

2015-09-01

To shorten vegetative stage and induce transition from vegetative to reproductive stage in orchids, we overexpressed Phalaenopsis amabilis Flowering LocusT (PaFT) gene under the control of Ubiquitin promoter into protocorm of Indonesian Wild Orchid Phalaenopsis amabilis (L.) Blume. The dynamic expression of vegetative gene Phalaenopsis Homeobox1 (POH1) and flowering time gene PaFT has been analyzed. Accumulation of mRNA was detected in shoot and leaves of both transgenic and non transgenic plants by using Reverse transcriptase-PCR (RT-PCR) with specific gene primers for POH1 and PaFT in 24 months old plants. To analyze the POH1 and PaFT genes, three pairs of degenerate primers PaFT degF1R1, F2R2 and F3R3 that amplified 531 bp PaFT cDNA were used. We detected 700 bp PaFTcDNA from leaves and shoots of transgenic plants, but not in NT plants. POH1 mRNA was detected in plants. PaFT protein consists of Phospatidyl Ethanolamine-Binding Protein (PEBP) in interval base 73-483 and CETS family protein at base 7-519, which are important motif for transmembrane protein. We inserted Ubipro::PaFT/pGAS101 into P. amabilis protocorm using Agrobacterium. Analysis of transgenic plants showed that PaFTmRNA was accumulated in leaves of 12 months after sowing, although it is not detected in non transgeic plants. Compare to the wild type (NT plants), ectopic expression of PaFT shows alter phenotype as follows: 31% normal, 19% with short-wavy leaves, 5% form rosette leaves and 45% produced multishoots. Analysis of protein profiles of trasgenic plants showed that a putative PaFT protein (MW 19,7 kDa) was produced in 1eaves and shoots.This means that at 12 months, POH1 gene expression gradually decreased/negatively regulated, the expression of PaFT gene was activated, although there is no flower initiation yet. Some environmental factors might play a role to induce inflorescens. This experiment is in progress.

Cytological studies in Four Endemic Genera of Apiaceae from India

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Kumar Vinod C. Gosavi

2016-11-01

Full Text Available The family Apiaceae comprises 428 genera worldwide, of which 68 are represented in India. Karnataka P.K. Mukh. & Constance, Pinda P.K. Mukh. & Constance, Polyzygus Dalzell, Sivadasania N. Mohanan & Pimenov and Vanasushava P.K. Mukh. & Constance are endemic genera to the country. The present communication is an attempt to provide chromosome counts and basic karyomorphology of Karnataka, Pinda, Polyzygus and Vanasushava. Somatic chromosome counts 2n = 22 and meiotic chromosome counts n = 11 are reported for the first time in Karnataka and Pinda while in Polyzygus 2n = 36 and in Vanasushava 2n = 44 are reported as new cytotypes in present investigation. Karyomophologically Pinda and Vanasushava showed affinities with Heracleum L. while Polyzygus showed advanced karyotype symmetry.

The diets of Hispaniolan colubrid snakes : I. Introduction and prey genera.

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Henderson, Robert W

1984-05-01

Approximately 1590 Hispaniolan colubrid snakes representing six genera and eight species were examined for prey remains (Alsophis cantherigerus, Antillophis parvifrons, Darlingtonia haetiana, Hypsirhynchus ferox, Ialtris dorsalis, Uromacer catesbyi, U. frenatus, and U. oxyrhynchus). The snakes were collected at many localities over a span of 80 years.Of 426 prey items, 77.9% were lizards (of which 69.6% were anoles), 19% frogs, 2.6% birds and mammals, and 0.5% other snakes. Darlingtonia was the only snake that did not exploit lizards; it fed exclusively on Eleutherodactylus frogs, including egg clutches. Disregarding Darlingtonia, there is no size class of Hispaniolan colubrids between 20-90 cm SVL that does not prey primarily on Anolis. Certain prey genera are added to, or deleted from, diets depending on snake size, but the data suggest that snake SVL alone does little to dictate what prey genera (or groups) are eaten. Shannon-Wiener values (H') indicate that Darlingtonia has the narrowest trophic niche, while Alsophis and Ialtris have the widest. Values of H' are not correlated with snake SVL, but highly significant (Peats diurnally active (anoles) and diurnally quiescent (hylid frogs) prey with almost equal frequency.Within Maglio's cantherigerus species assemblage, in which an Alsophis cantherigerus-like snake was ancestral to the other species, and in which longsnouted Uromacer are the most morphologically derived, there is an obvious trend toward trophic specialization on Hispaniola. The West Indies have provided an ideal natural laboratory for the investigation of many aspects of vertebrate ecology, and an arena in which to test theories of island biogeography. The most extensively studied West Indian vertebrates have been the lizards of the iguanid genus Anolis. Conversely, the ecology of West Indian snakes has been largely ignored. This is surprising in light of the fact that much has been written about Anolis predation, but little has been written about

Genome sequencing and transposon mutagenesis of Burkholderia seminalis TC3.4.2R3 identify genes contributing to suppression of orchid necrosis caused by B. gladioli

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Thirty six strains of Burkholderia spp. isolated from sugarcane were evaluated for biological control of leaf and pseudobulb necrosis of orchid caused by B. gladioli. Twenty nine of the sugarcane strains suppressed the disease in greenhouse assays. We generated a draft genomic sequence of one suppr...

Growth regulators in reducing the size of orchid Fire-of-Star for commercialization in vase

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Patricia Reiners Carvalho

2016-05-01

Full Text Available Fire-of-star (Epidendrum radicans Pav. ex Lindl. is a terrestrial orchid, native to Brazil, tussocks with leafy stems, always with many adventitious roots, releasing its long inflorescence with about 1.0 m from the apex of the stem, showing great potential in floriculture, but long flowering stem complicates their marketing vase. The objective of this study was to evaluate the effect of paclobutrazol (PBZ and mepiquat chloride (CLM the reduction of the size of the orchid E. radicans. Plants with an average height of 15 cm were cultivated in a greenhouse with 50% shading. The growth regulators used were PBZ at doses of 0; 5; 10; 15 and 20 mg L-1, and the CLM at doses of 0; 1; 2; 3; 4 and 5 mg L-1. The frequency of application was fortnightly, totaling ten applications. The experiment was installed on a randomized complete blocks, one block to the PBZ with 5 treatments and 10 replications and another block to the CLM, with 6 treatments and 10 replications. Data were submitted to analysis of variance at 5% probability and significance when seen performed regression analysis. The variables evaluated were number shoots, plant height (cm, number of flower stems and leaf area. The results indicated that E. radicans treated with 5 mg L-1 PBZ were 50% lower in height than the control plants. When CLM treated with a dose of 1 mg L-1 plants were 25% lower in height than the control plants, maintaining its aesthetic characteristics suitable for marketing in vases. Growth regulators in the applied doses did not affect the number of shoots and flower stems. PBZ treated plants had 50% of their leaf area compared to control while those treated with CLM doses remained with the same average leaf area of control.

Three-dimensional reconstruction of root shape in the moth orchid Phalaenopsis sp.: a biomimicry methodology for robotic applications.

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Mishra, Anand Kumar; Degl'Innocenti, Andrea; Mazzolai, Barbara

2018-04-25

Within the field of biorobotics, an emerging branch is plant-inspired robotics. Some effort exists in particular towards the production of digging robots that mimic roots; for these, a deeper comprehension of the role of root tip geometry in excavation would be highly desirable. Here we demonstrate a photogrammetry-based pipeline for the production of computer and manufactured replicas of moth orchid root apexes. Our methods yields faithful root reproductions. This can be used either for quantitative studies aimed at comparing different root morphologies, or directly to implement a particular root shape in a biorobot.

Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera

Science.gov (United States)

2012-01-01

Background Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis). Results One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Conclusion Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to mid Miocene. PMID:23228209

Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera.

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de Sá, Rafael O; Streicher, Jeffrey W; Sekonyela, Relebohile; Forlani, Mauricio C; Loader, Simon P; Greenbaum, Eli; Richards, Stephen; Haddad, Célio F B

2012-12-10

Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis). One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to mid Miocene.

The effect of some organic compounds and NAA application on the in vitro growth of the black orchid (Coelogyne pandurata Lindl.

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RINI UNTARI

2006-10-01

Full Text Available Coelogyne pandurata Lindl. is a lowland epiphytic orchid that has pale green flowers with typically black markings on the lips. This species conventionally propagated asexually by rhizome. This orchid is now facing a great conservation problem and threatened to extinction due to human exploitation. That is why conservation activities such as developing proper cultivation, are urgently required. An in vitro experiment was conducted at the Laboratory of Tissue Culture at Bogor Botanic Garden. The experiment was carried out using a completely randomized design with two factors and ten replications. The treatments were the supplementation of the basal media i.e. Vacin and Went added with sugar, activated charcoal and agar, with 30 different combinations of organic compounds i.e., coconut water 250 mL/L, banana 150 g/L, potato 200 g/L, sweet potato 150 g/L, soybean 150 g/L and no organic compound as a control, and application of NAA (0, 5, 10, 15, and 20 ppm. The result showed that there was a significant effect of the organic compounds and NAA application on the length and the number of roots, height, number of leaves and number of shoots produced by the explants. The combination of sweet potato 150 g/L without NAA application showed the best result.

Molecular phylogeny of Trametes and related genera based on ...

African Journals Online (AJOL)

Some species of Trametes and their related genera are so similar in microstructure characteristics that it is difficult to identify and separate them by traditional taxonomy. In this study, we elucidated relationships among Trametes through comparison of the nuclear internal transcribed spacer (ITS) and the nearly complete ...

Molecular phylogeny of microhylid frogs (Anura: Microhylidae with emphasis on relationships among New World genera

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de Sá Rafael O

2012-12-01

Full Text Available Abstract Background Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis. Results One mitochondrial and three nuclear genes (about 2.8 kb were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Conclusion Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to

Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul.

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Kolanowska, Marta; Mystkowska, Katarzyna; Kras, Marta; Dudek, Magdalena; Konowalik, Kamil

2016-01-01

The location of possible glacial refugia of six Apostasioideae representatives is estimated based on ecological niche modeling analysis. The distribution of their suitable niches during the last glacial maximum (LGM) is compared with their current potential and documented geographical ranges. The climatic factors limiting the studied species occurrences are evaluated and the niche overlap between the studied orchids is assessed and discussed. The predicted niche occupancy profiles and reconstruction of ancestral climatic tolerances suggest high level of phylogenetic niche conservatism within Apostasioideae.

Fidelity, Adaptation, and Meta-commentary: The Case of Susan Orlean’s The Orchid Thief and Spike Jonze’s Adaptation

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Victoria de Zwaan

2017-12-01

Full Text Available Abstract Susan Orlean’s The Orchid Thief has raised and defied questions about genre since its appearance in 1998. Though “research” and “facts” are at the foreground of the book, critics have described it by such terms as literary non-fiction, faction, personal journalism, and non-fiction novel because of its strong “literary,” that is narrative, characterological, thematic, and even philosophical, qualities. Struggling to make a faithful adaptation of this “simple” and “beautiful” book “about flowers” for film, Charlie Kaufman, the neurotic and anxious protagonist/screenwriter of Adaptation (2002, a fictionalized avatar of the real-life Charlie Kaufman, works through the wide range of possible generic and narrative adaptive possibilities that the book invites. The series of apparent false starts eventually get resolved, in a desperate attempt at creating closure, by way of the “Hollywood ending” that the screenwriter ostensibly despises and insists he will avoid. This paper engages the complex relationships between these two objects – The Orchid Thief and Adaptation – first, by providing some interpretive analysis of Orlean’s book and its potential adaptive possibilities, and second, by examining what happens to those possibilities in Adaptation. On my argument, the film refracts the book’s concerns into a meditation on the processes of reading, storytelling, and interpretation in the realm of explicit adaptation by way of metafiction, metalepsis, and other techniques associated with experimental narrative.

The Biosynthesis of Unusual Floral Volatiles and Blends Involved in Orchid Pollination by Deception: Current Progress and Future Prospects.

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Wong, Darren C J; Pichersky, Eran; Peakall, Rod

2017-01-01

Flowers have evolved diverse strategies to attract animal pollinators, with visual and olfactory floral cues often crucial for pollinator attraction. While most plants provide reward (e.g., nectar, pollen) in return for the service of pollination, 1000s of plant species, particularly in the orchid family, offer no apparent reward. Instead, they exploit their often specific pollinators (one or few) by mimicking signals of female insects, food source, and oviposition sites, among others. A full understanding of how these deceptive pollination strategies evolve and persist remains an open question. Nonetheless, there is growing evidence that unique blends that often contain unusual compounds in floral volatile constituents are often employed to secure pollination by deception. Thus, the ability of plants to rapidly evolve new pathways for synthesizing floral volatiles may hold the key to the widespread evolution of deceptive pollination. Yet, until now the biosynthesis of these volatile compounds has been largely neglected. While elucidating the biosynthesis in non-model systems is challenging, nonetheless, these cases may also offer untapped potential for biosynthetic breakthroughs given that some of the compounds can be exclusive or dominant components of the floral scent and production is often tissue-specific. In this perspective article, we first highlight the chemical diversity underpinning some of the more widespread deceptive orchid pollination strategies. Next, we explore the potential metabolic pathways and biosynthetic steps that might be involved. Finally, we offer recommendations to accelerate the discovery of the biochemical pathways in these challenging but intriguing systems.

Orchid bees as bio-indicators for organic coffee farms in Costa Rica: Does farm size affect their abundance?

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Ingemar Hedström

2006-09-01

Full Text Available The potential of Euglossini bees, especially Euglossa, as biological indicators of organic vs non-organic coffee farms was studied in Atenas and San Isidro, Alajuela, Costa Rica using 1.8-cineole as lure. Observations were made for three days at each of four farms and complemented with data from a year of observations. Orchid bees were in greater abundance in the organic farms (t-Student test. However, lower abundances suggest that an organic farm may be negatively affected by the proximity of non-organic farms, depending on its size and distance. Orchid bees may be indicators of organic coffee farms. Rev. Biol. Trop. 54 (3: 965-969. Epub 2006 Sept. 29.Por un año estudiamos las abejas de la tribu Euglossini (abejas de las orquídeas, especialmente el género Euglossa en Atenas y San Isidro, Alajuela, Costa Rica, para identificar su potencial como bioindicadoras de fincas orgánicas y fincas "convencionales" de café. Usamos como atrayente aceite de eucalipto (1.8-cineole. Las abejas son más abundantes en las fincas de café orgánico (t-Student. Sin embargo, el relativamente bajo número de abejas en la menor de las dos fincas orgánicas sugiere que el tamaño de una finca orgánica y la proximidad a las fincas convencionales, podrían tener efectos negativos en la orgánica. Estas abejas podrían servir como bioindicadores de fincas orgánicas.

Twelve previously unknown phage genera are ubiquitous in global oceans.

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Holmfeldt, Karin; Solonenko, Natalie; Shah, Manesh; Corrier, Kristen; Riemann, Lasse; Verberkmoes, Nathan C; Sullivan, Matthew B

2013-07-30

Viruses are fundamental to ecosystems ranging from oceans to humans, yet our ability to study them is bottlenecked by the lack of ecologically relevant isolates, resulting in "unknowns" dominating culture-independent surveys. Here we present genomes from 31 phages infecting multiple strains of the aquatic bacterium Cellulophaga baltica (Bacteroidetes) to provide data for an underrepresented and environmentally abundant bacterial lineage. Comparative genomics delineated 12 phage groups that (i) each represent a new genus, and (ii) represent one novel and four well-known viral families. This diversity contrasts the few well-studied marine phage systems, but parallels the diversity of phages infecting human-associated bacteria. Although all 12 Cellulophaga phages represent new genera, the podoviruses and icosahedral, nontailed ssDNA phages were exceptional, with genomes up to twice as large as those previously observed for each phage type. Structural novelty was also substantial, requiring experimental phage proteomics to identify 83% of the structural proteins. The presence of uncommon nucleotide metabolism genes in four genera likely underscores the importance of scavenging nutrient-rich molecules as previously seen for phages in marine environments. Metagenomic recruitment analyses suggest that these particular Cellulophaga phages are rare and may represent a first glimpse into the phage side of the rare biosphere. However, these analyses also revealed that these phage genera are widespread, occurring in 94% of 137 investigated metagenomes. Together, this diverse and novel collection of phages identifies a small but ubiquitous fraction of unknown marine viral diversity and provides numerous environmentally relevant phage-host systems for experimental hypothesis testing.

Nuclear DNA content of the pigeon orchid (Dendrobium crumenatum Sw. with the analysis of flow cytometry

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Upatham Meesawat

2008-05-01

Full Text Available Nuclear DNA content for the adult plants grown in a greenhouse and in vitro young plantlets of the pigeon orchid (Dendrobium crumenatum Sw. was analyzed using flow cytometry. The resulting 2C DNA values ranged from 2.30±0.14 pgto 2.43±0.06 pg. However, nuclear DNA ploidy levels of long-term in vitro plantlets were found to be triploid and tetraploid.These ploidy levels were confirmed by chromosome counting. Tetraploid individuals (2n = 4x = 76 had approximately two times DNA content than diploid (2n = 2x = 38 individuals. This variation may be due to prolonged cultivation and thepresence of exogenous plant growth regulators.

Some notes on species of the genera Bachia and Scolecosaurus

NARCIS (Netherlands)

Brongersma, L.D.

1946-01-01

Our herpetological collections contain only five specimens referable to the genera Bachia and Scolecosaurus, while the genus Bachia is represented in the Amsterdam Zoological Museum by eight specimens. Scanty though this material may be, some of the specimens proved to be of sufficient interest to

Actuarial senescence in a long-lived orchid challenges our current understanding of ageing

DEFF Research Database (Denmark)

Dahlgren, Johan; Colchero, Fernando; Jones, Owen

2016-01-01

The dominant evolutionary theory of actuarial senescence – an increase in death rate with advancing age – is based on the concept of a germ cell line that is separated from the somatic cells early in life. However, such a separation is not clear in all organisms. This has been suggested to explain...... the paucity of evidence for actuarial senescence in plants. We used a 32-year study of Dactylorhiza lapponica that replaces its organs each growing season, to test whether individuals of this tuberous orchid senesce. We performed a Bayesian survival trajectory analysis accounting for reproductive investment......, for individuals under two types of land-use, in two climatic regions. The mortality trajectory was best-approximated by a Weibull model, showing clear actuarial senescence. Rates of senescence in this model declined with advancing age, but were slightly higher in mown plots and in the more benign climatic region...

A comparison of leaf crystal macropatterns in the two sister genera Piper and Peperomia (Piperaceae).

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Horner, Harry T; Wanke, Stefan; Samain, Marie-Stéphanie

2012-06-01

This is the first large-scale study comparing leaf crystal macropatterns of the species-rich sister genera Piper and Peperomia. It focuses on identifying types of calcium oxalate crystals and their macropatterns in leaves of both genera. The Piper results are placed in a phylogenetic context to show evolutionary patterns. This information will expand knowledge about crystals and provide specific examples to help study their form and function. One example is the first-time observation of Piper crystal sand tumbling in chlorenchyma vacuoles. Herbarium and fresh leaves were cleared of cytoplasmic content and examined with polarizing microscopy to identify types of crystals and their macropatterns. Selected hydrated herbarium and fresh leaf punches were processed for scanning electron microscopy and x-ray elemental analysis. Vibratome sections of living Piper and Peperomia leaves were observed for anatomical features and crystal movement. Both genera have different leaf anatomies. Piper displays four crystal types in chlorenchyma-crystal sand, raphides, styloids, and druses, whereas Peperomia displays three types-druses, raphides, and prisms. Because of different leaf anatomies and crystal types between the genera, macropatterns are completely different. Crystal macropattern evolution in both is characterized by increasing complexity, and both may use their crystals for light gathering and reflection for efficient photosynthesis under low-intensity light environments. Both genera have different leaf anatomies, types of crystals and crystal macropatterns. Based on Piper crystals associated with photosynthetic tissues and low-intensity light, further study of their function and association with surrounding chloroplasts is warranted, especially active crystal movement.

Flora of St Katherine Protectorate: key to families and genera ...

African Journals Online (AJOL)

Flora of St Katherine Protectorate: key to families and genera. Wafaa Kamel, Magda Gazar, Samy Zalat, Francis Gilbert. Abstract. Egyptian Journal of Natural History Vol.1 1999: 1-39. Full Text: EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT.

Unusual 4-hydroxybenzaldehyde synthase activity from tissue cultures of the vanilla orchid Vanilla planifolia.

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Podstolski, Andrzej; Havkin-Frenkel, Daphna; Malinowski, Jacek; Blount, Jack W; Kourteva, Galina; Dixon, Richard A

2002-11-01

Tissue cultures of the vanilla orchid, Vanilla planifolia, produce the flavor compound vanillin (4-hydroxy-3-methoxybenzaldehyde) and vanillin precursors such as 4-hydroxybenzaldehyde. A constitutively expressed enzyme activity catalyzing chain shortening of a hydroxycinnamic acid, believed to be the first reaction specific for formation of vanilla flavor compounds, was identified in these cultures. The enzyme converts 4-coumaric acid non-oxidatively to 4-hydroxybenzaldehyde in the presence of a thiol reagent but with no co-factor requirement. Several forms of this 4-hydroxybenzaldehyde synthase (4HBS) were resolved and partially purified by a combination of hydrophobic interaction, ion exchange and gel filtration chromatography. These forms appear to be interconvertible. The unusual properties of the 4HBS, and its appearance in different protein fractions, raise questions as to its physiological role in vanillin biosynthesis in vivo.

Overexpression of an orchid (Dendrobium nobile SOC1/TM3-like ortholog, DnAGL19, in Arabidopsis regulates HOS1-FT expression

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Xiao-ru eLiu

2016-02-01

Full Text Available Flowering in the appropriate season is critical for successful reproduction in angiosperms. The orchid species, Dendrobium nobile, requires vernalization to achieve flowering in the spring, but the underlying regulatory network has not been identified to date. The MADS-box transcription factor DnAGL19 was previously identified in a study of low-temperature treated D. nobile buds and was suggested to regulate vernalization-induced flowering. In this study, phylogenetic analysis of DnAGL9 and the MADS-box containing proteins showed that DnAGL19 is phylogenetically closely related to the SOC1-like protein from orchid Dendrobium Chao Parya Smile, DOSOC1. The orchid clade closed to but is not included into the SOC1-1/TM3 clades associated with either eudicots or monocots, suggesting that DnAGL19 is an SOC1-1/TM3-like ortholog. DnAGL19 was found to be highly expressed in pseudobulbs, leaves, roots and axillary buds but rarely in flowers, and to be substantially upregulated in axillary buds by prolonged low-temperature treatments. Overexpression of DnAGL19 in Arabidopsis thaliana resulted in a small but significantly reduced time to bolting, suggesting that flowering time was slightly accelerated under normal growth conditions. Consistent with this, the A. thaliana APETELA1 (AP1 gene was expressed at an earlier stage in transgenic lines than in wild type plants, while the FLOWERING LOCUS T (FT gene was suppressed, suggesting that altered regulations on these transcription factors caused the weak promotion of flowering. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1 (HOS1 was slightly activated under the same conditions, suggesting that the HOS1-FT module may be involved in the DnAGL19-related network. Under vernalization conditions, FT expression was significantly upregulated, whereas HOS1 expression in the transgenic A. thaliana has a level similar to that in wild type. Taken together, these results suggest that DnAGL19 controls the action of the

Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera.

Science.gov (United States)

Afkhami, Michelle E; Luke Mahler, D; Burns, Jean H; Weber, Marjorie G; Wojciechowski, Martin F; Sprent, Janet; Strauss, Sharon Y

2018-02-01

How species interactions shape global biodiversity and influence diversification is a central - but also data-hungry - question in evolutionary ecology. Microbially based mutualisms are widespread and could cause diversification by ameliorating stress and thus allowing organisms to colonize and adapt to otherwise unsuitable habitats. Yet the role of these interactions in generating species diversity has received limited attention, especially across large taxonomic groups. In the massive angiosperm family Leguminosae, plants often associate with root-nodulating bacteria that ameliorate nutrient stress by fixing atmospheric nitrogen. These symbioses are ecologically-important interactions, influencing community assembly, diversity, and succession, contributing ~100-290 million tons of N annually to natural ecosystems, and enhancing growth of agronomically-important forage and crop plants worldwide. In recent work attempting to determine whether mutualism with N-fixing bacteria led to increased diversification across legumes, we were unable to definitively resolve the relationship between diversification and nodulation. We did, however, succeed in compiling a very large searchable, analysis-ready database of nodulation data for 749 legume genera (98% of Leguminosae genera; LPWG 2017), which, along with associated phylogenetic information, will provide a valuable resource for future work addressing this question and others. For each legume genus, we provide information about the species richness, frequency of nodulation, subfamily association, and topological correspondence with an additional data set of 100 phylogenetic trees curated for database compatibility. We found 386 legume genera were confirmed nodulators (i.e., all species examined for nodulation nodulated), 116 were non-nodulating, four were variable (i.e., containing both confirmed nodulators and confirmed non-nodulators), and 243 had not been examined for nodulation in published studies. Interestingly

The Biosynthesis of Unusual Floral Volatiles and Blends Involved in Orchid Pollination by Deception: Current Progress and Future Prospects

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Darren C. J. Wong

2017-11-01

Full Text Available Flowers have evolved diverse strategies to attract animal pollinators, with visual and olfactory floral cues often crucial for pollinator attraction. While most plants provide reward (e.g., nectar, pollen in return for the service of pollination, 1000s of plant species, particularly in the orchid family, offer no apparent reward. Instead, they exploit their often specific pollinators (one or few by mimicking signals of female insects, food source, and oviposition sites, among others. A full understanding of how these deceptive pollination strategies evolve and persist remains an open question. Nonetheless, there is growing evidence that unique blends that often contain unusual compounds in floral volatile constituents are often employed to secure pollination by deception. Thus, the ability of plants to rapidly evolve new pathways for synthesizing floral volatiles may hold the key to the widespread evolution of deceptive pollination. Yet, until now the biosynthesis of these volatile compounds has been largely neglected. While elucidating the biosynthesis in non-model systems is challenging, nonetheless, these cases may also offer untapped potential for biosynthetic breakthroughs given that some of the compounds can be exclusive or dominant components of the floral scent and production is often tissue-specific. In this perspective article, we first highlight the chemical diversity underpinning some of the more widespread deceptive orchid pollination strategies. Next, we explore the potential metabolic pathways and biosynthetic steps that might be involved. Finally, we offer recommendations to accelerate the discovery of the biochemical pathways in these challenging but intriguing systems.

Deep Multi-Task Learning for Tree Genera Classification

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Ko, C.; Kang, J.; Sohn, G.

2018-05-01

The goal for our paper is to classify tree genera using airborne Light Detection and Ranging (LiDAR) data with Convolution Neural Network (CNN) - Multi-task Network (MTN) implementation. Unlike Single-task Network (STN) where only one task is assigned to the learning outcome, MTN is a deep learning architect for learning a main task (classification of tree genera) with other tasks (in our study, classification of coniferous and deciduous) simultaneously, with shared classification features. The main contribution of this paper is to improve classification accuracy from CNN-STN to CNN-MTN. This is achieved by introducing a concurrence loss (Lcd) to the designed MTN. This term regulates the overall network performance by minimizing the inconsistencies between the two tasks. Results show that we can increase the classification accuracy from 88.7 % to 91.0 % (from STN to MTN). The second goal of this paper is to solve the problem of small training sample size by multiple-view data generation. The motivation of this goal is to address one of the most common problems in implementing deep learning architecture, the insufficient number of training data. We address this problem by simulating training dataset with multiple-view approach. The promising results from this paper are providing a basis for classifying a larger number of dataset and number of classes in the future.

Agrobacterium-mediated transformation of the recalcitrant Vanda Kasem's Delight orchid with higher efficiency.

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Gnasekaran, Pavallekoodi; Antony, Jessica Jeyanthi James; Uddain, Jasim; Subramaniam, Sreeramanan

2014-01-01

The presented study established Agrobacterium-mediated genetic transformation using protocorm-like bodies (PLBs) for the production of transgenic Vanda Kasem's Delight Tom Boykin (VKD) orchid. Several parameters such as PLB size, immersion period, level of wounding, Agrobacterium density, cocultivation period, and concentration of acetosyringone were tested and quantified using gusA gene expression to optimize the efficiency of Agrobacterium-mediated genetic transformation of VKD's PLBs. Based on the results, 3-4 mm PLBs wounded by scalpel and immersed for 30 minutes in Agrobacterium suspension of 0.8 unit at A 600 nm produced the highest GUS expression. Furthermore, cocultivating infected PLBs for 4 days in the dark on Vacin and Went cocultivation medium containing 200 μM acetosyringone enhanced the GUS expression. PCR analysis of the putative transformants selected in the presence of 250 mg/L cefotaxime and 30 mg/L geneticin proved the presence of wheatwin1, wheatwin2, and nptII genes.

Vanillin-bioconversion and bioengineering of the most popular plant flavor and its de novo biosynthesis in the vanilla orchid.

Science.gov (United States)

Gallage, Nethaji J; Møller, Birger Lindberg

2015-01-01

In recent years, biotechnology-derived production of flavors and fragrances has expanded rapidly. The world's most popular flavor, vanillin, is no exception. This review outlines the current state of biotechnology-based vanillin synthesis with the use of ferulic acid, eugenol, and glucose as substrates and bacteria, fungi, and yeasts as microbial production hosts. The de novo biosynthetic pathway of vanillin in the vanilla orchid and the possible applied uses of this new knowledge in the biotechnology-derived and pod-based vanillin industries are also highlighted. Copyright © 2015 The Author. Published by Elsevier Inc. All rights reserved.

A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera.

Science.gov (United States)

Park, Jeong-Mi; Manen, Jean-François; Colwell, Alison E; Schneeweiss, Gerald M

2008-07-01

The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera.

Revealing the secrets of African annonaceae : systematics, evolution and biogeography of the syncarpous genera Isolona and Monodora

NARCIS (Netherlands)

Couvreur, T.L.P.

2008-01-01

The goal of this PhD project was to study the evolution, systematics and biogeography of two African genera from the pan-tropical Annonaceae family: Isolona and Monodora. Both genera are unique within the family in that the female reproductive parts (or carpels) are fused into a single unit. All

Revision of the Oriental genera of Agathidinae (Hymenoptera, Braconidae with an emphasis on Thailand and interactive keys to genera published in three different formats

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Michael Sharkey

2009-09-01

Full Text Available The genera of Oriental Agathidinae are revised and a fully illustrated dichotomous key is presented. New generic concepts are proposed for Bassus Fabricius, 1804 and Hypsostypos Baltazar, 1963. Bassus is restricted to a clade with an Old World distribution and the remaining members are divided amongst the resurrected genera Camptothlipsis Enderlein, 1920, Lytopylus Förster, 1862, and Therophilus Wesmael, 1837. The concept of Hypsostypos is restricted and the new genus Amputostypos Sharkey, gen. n. is proposed to include species formerly included in Hypsostypos that do not have raised antennal bases. Troticus Brullé, 1846 is reported from the Oriental region for the first time. Eighteen genera are recognized for Thailand and neighboring areas, i.e., Agathis Latreille, 1804, Amputostypos, Aneurobracon Brues, 1930, Bassus, Biroia Szépligeti, 1900, Braunsia Kriechbaumer, 1894, Camptothlipsis, Coccygidium Saussure, 1892, Cremnops Förster, 1862, Disophrys Förster, 1862, Earinus Wesmael, 1837, Euagathis Szépligeti, 1900, Gryochus Enderlein, 1920, Hypsostypos, Lytopylus Förster, 1862, Therophilus, Cremnoptoides van Achterberg & Chen, 2004, and Troticus. Identification keys to the genera are provided as a standard textual dichotomous key, as well as online keys in three different formats (conventional dichotomous, DELTA/Intkey, Lucid, and MX to enable users to choose their prefered platform and to allow direct comparisons of the technologies for producing online keys. Publication of underlying data (data matrices, character states table, and images under the OpenDataCommons license (ODbl (http://www.opendatacommons.org/licenses/odbl/1.0/ for DELTA/Intkey files (doi: 10.3897/zookeys.21.271.app.1.ik, primary DELTA files (10.3897/zookeys.21.271.app.2.ik Lucid3 (LIF3 and Lucid SDD key data files (doi: 10.3897/zookeys.21.271.app.3.ik and MX MySQL database files (doi: 10.3897/zookeys.21.271.app.4.ik allows future workers to edit keys and to add newly

Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

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Dedysh, Svetlana N; Haupt, Evan S; Dunfield, Peter F

2016-08-01

The family Beijerinckiaceae was circumscribed in 2005 to accommodate four genera of phylogenetically related alphaproteobacteria: Beijerinckia, Chelatococcus, Methylocella and Methylocapsa. Later, four additional genera, i.e. Methylovirgula, Methyloferula, Methylorosula and Camelimonas, were described and assigned to this family, which now accommodates 21 species with validly published names. Members of this family possess strikingly different lifestyles, including chemoheterotrophy, facultative methylotrophy, obligate methanotrophy and facultative methanotrophy. Levels of 16S rRNA gene sequence similarity among most of these bacteria range from 96 to 98 %, suggesting a common evolutionary origin. The genera Chelatococcus and Camelimonas, however, are not monophyletic with the other described genera based on 16S rRNA gene sequence phylogeny, and instead form a distant cluster more closely related to the Methylobacteriaceae. Physiologically these two genera also lack several properties common to the other Beijerinckiaceae. On the other hand, the genus Rhodoblastus, presently considered a member of the Bradyrhizobiaceae, affiliates with high confidence to the Beijerinckiaceae. Here, we propose to transfer the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov., and present an emended description of the family Beijerinckiaceae, including the genus Rhodoblastus.

Early Studies on Protoplast Isolation of Ludisia discolor, A Wild Orchid.

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Poobathy, Ranjetta; Zakaria, Rahmad; Hamzah, Syed Mohd Edzham Syed; Subramaniam, Sreeramanan

2016-11-01

The terrestrial Ludisia discolor , also referred to as the jewel orchid is prized for the quality of its leaves. L. discolor is known as a medicinal herb and is touted for its heat- and pathogen-resisting qualities. L. discolor is valuable in the production of both flavonoids and anthocyanins, antioxidants that are exalted in the health industry. Plant cell cultures have emerged as alternative sources of anthocyanin production. Plant protoplast cultures are used frequently in transient gene expression studies and in the establishment of callus and cell suspension cultures. Benefits of plant protoplast system include similarity to cells found in plant tissues, reproduction under controlled conditions, and prevention of masking of stress responses to previous handling techniques. A study was conducted to assess the amenability of the stem and leaves of L. discolor to protoplast isolation. The stem and leaf segments were weighed, sliced into thin layers, immersed in a digestion medium, washed and then cultured onto a recovery medium. Results indicated that the production of plant protoplasts from L. discolor may be viewed as an alternative in the generation of cell cultures and ultimately in the production of anthocyanins from the cell cultures.

Interaction networks and the use of floral resources by male orchid bees (Hymenoptera: Apidae: Euglossini in a primary rain forests of the Chocó Region (Colombia

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Rodulfo Ospina-Torres

2015-09-01

Full Text Available Orchid bees are important keystone pollinators from the Neotropics. With the aim to study the relationships between orchid bees and their nectar and aromatic host species, we made systematic samplings of males across two conservation areas in the biogeographic Chocó Region of Colombia. We used chemical baits to collect 352 male bees during five months. The pollen attached to their bodies was extracted for palynological identification and to estimate interaction networks. The euglossine community consisted of at least 22 species including Eg. maculilabris, Eg. orellana, Eg. championiand Eg. ignita.The male bees were associated with 84 plants but depended on a small group of them (Peperomiaspp. and Anthuriumspp, as well as species of Solanaceae, Ericaceae and Malpighiaceae which were widely distributed across the altitudinal gradient, and were available through the year. The resulting interaction networks revealed a typical nested pattern usually found in plant-pollinator interactions, with several rare bee and plant species interaction with a small group of generalist bees and plant species. Albeit, we found variation within networks related to species composition. Such variation may be a consequence of specific differences in plant flowering phenology.

Interaction networks and the use of floral resources by male orchid bees (Hymenoptera: Apidae: Euglossini) in a primary rain forests of the Chocó Region (Colombia).

Science.gov (United States)

Ospina-Torres, Rodulfo; Montoya-Pfeiffer, Paula María; Parra-H, Alejandro; Solarte, Victor; Tupac Otero, Joel

2015-09-01

Orchid bees are important keystone pollinators from the Neotropics. With the aim to study the relationships between orchid bees and their nectar and aromatic host species, we made systematic samplings of males across two conservation areas in the biogeographic Choc6 Region of Colombia. We used chemical baits to collect 352 male bees during five months. The pollen attached to their bodies was extracted for palynological identification and to estimate interaction networks. The euglossine community consisted of at least 22 species including Eg. maculilabris, Eg. orellana, Eg. championi and Eg. ignita. The male bees were associated with 84 plants but depended on a small group of them (Peperomia spp. and Anthurium spp, as well as species of Solanaceae, Ericaceae and Malpighiaceae) which were widely distributed across the altitudinal gradient, and were available through the year. The resulting interaction networks revealed a typical nested pattern usually found in plant-pollinator interactions, with several rare bee and plant species interaction with a small group of generalist bees and plant species. Albeit, we found variation within networks related to species composition. Such variation may be a consequence of specific differences in plant flowering phenology.

Contrasting latitudinal patterns of life-history divergence in two genera of new world thrushes (Turdinae)

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Boyce, Andy J.; Martin, Thomas E.

2017-01-01

Several long-standing hypotheses have been proposed to explain latitudinal patterns of life-history strategies. Here, we test predictions of four such hypotheses (seasonality, food limitation, nest predation and adult survival probability) by examining life-history traits and age-specific mortality rates of several species of thrushes (Turdinae) based on field studies at temperate and tropical sites and data gathered from the literature. Thrushes in the genus Catharus showed the typical pattern of slower life-history strategies in the tropics while co-occuring Turdus thrushes differed much less across latitudes. Seasonality is a broadly accepted hypothesis for latitudinal patterns, but the lack of concordance in latitudinal patterns between co-existing genera that experience the same seasonal patterns suggests seasonality cannot fully explain latitudinal trait variation in thrushes. Nest-predation also could not explain patterns based on our field data and literature data for these two genera. Total feeding rates were similar, and per-nestling feeding rates were higher at tropical latitudes in both genera, suggesting food limitation does not explain trait differences in thrushes. Latitudinal patterns of life histories in these two genera were closely associated with adult survival probability. Thus, our data suggest that environmental influences on adult survival probability may play a particularly strong role in shaping latitudinal patterns of life-history traits.

Effect of Conway Medium and f/2 Medium on the growth of six genera of South China Sea marine microalgae.

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Lananan, Fathurrahman; Jusoh, Ahmad; Ali, Nora'aini; Lam, Su Shiung; Endut, Azizah

2013-08-01

A study was performed to determine the effect of Conway and f/2 media on the growth of microalgae genera. Genera of Chlorella sp., Dunaliella sp., Isochrysis sp., Chaetoceros sp., Pavlova sp. and Tetraselmis sp. were isolated from the South China Sea. During the cultivation period, the density of cells were determined using Syringe Liquid Sampler Particle Measuring System (SLS-PMS) that also generated the population distribution curve based on the size of the cells. The population of the microalgae genera is thought to consist of mother and daughter generations since these microalgae genera reproduce by releasing small non-motile reproductive cells (autospores). It was found that the reproduction of Tetraselmis sp., Dunaliella sp. and Pavlova sp. could be sustained longer in f/2 Medium. Higher cell density was achieved by genus Dunaliella, Chlorella and Isochrysis in Conway Medium. Different genera of microalgae had a preference for different types of cultivation media. Copyright © 2013 Elsevier Ltd. All rights reserved.

The Genera of Fungi: fixing the application of type species of generic names.

Science.gov (United States)

Crous, Pedro W; Giraldo, Alejandra; Hawksworth, David L; Robert, Vincent; Kirk, Paul M; Guarro, Josep; Robbertse, Barbara; Schoch, Conrad L; Damm, Ulrike; Trakunyingcharoen, Thippawan; Groenewald, Johannes Z

2014-06-01

To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the "Without-prejudice List of Protected Generic Names of Fungi" (see IMA Fungus 4(2): 381-443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the

A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera

Science.gov (United States)

Park, J.-M.; Manen, J.-F.; Colwell, A.E.; Schneeweiss, G.M.

2008-01-01

The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera. ?? 2008 The Botanical Society of Japan and Springer.

AN EFFECTIVE IN VITRO SLOW GROWTH PROTOCOL FOR CONSERVATION OF THE ORCHID Epidendrum chlorocorymbos SCHLTR.

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Guadalupe Lopez-Puc

2013-04-01

Full Text Available Efficient slow growth protocol for the orchid E. chlorocorymbos Schltr. was developed using in vitro conservation studies. Seedlings were placed in MS culture medium and a 2x3x3 factorial design applied to evaluate the effects of supplementing the medium with mannitol (0, 1, 2 and 3%, sucrose (0, 1, 2 and 3% or sorbitol (0, 1, 2 and 3%. Experimental conditions were a 16:8 h photoperiod, 23 ± 2 °C temperature and 50-80% relative humidity. At 6 months, the best treatment was MS medium at half ionic strength with 1% sorbitol. The culture was also free of contamination. This resulted in slow growth and normal morphology during maintenance and successful growth afterwards. Shoots were subsequently recovered, multiplied and rooted on MS medium with sucrose 3% without addition of growth regulators.

Orchid’s diversity at Tepequém’s Tepuy, Roraima, Brazil

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Sanna Rocha Nobrega

2016-10-01

Full Text Available The Orchidaceae family is one of the largest among the angiosperm, with more than 27000 species, 2,500 is endemic to Brazil, 871 species are found in the Brazilian Amazon. In the far north of Brazil, in the state of Roraima, is located the Tepequém Mountains, a Tepuy – mountain top with table shape – with relictual vegetation due to prolonged isolation. Historically, Tepequém was a site of diamond exploration, which caused changes in the landscape. However, with mining decay, ecotourism became the main economic activity. About 68% of Roraima’s territory is composed of conservation areas and indigenous lands, and the Tepequém Mountain is the only Tepuy found outside the protected areas. Thus, this study aims to describe the orchid flora found at Tepequém’s Tepuy, an area of ecological and economic importance for Roraima’s ecotourism. The survey was carried out through expeditions between the years of 2013-2015. The species were photographed, harvested and taken to Embrapa Roraima for identification, exsiccate confection and/or cultivation. The exsiccatae were deposited at Roraima’s Integrated Museum (Museu Integrado de Roraima – MIRR and the Federal University of Roraima (Universidade Federal de Roraima – UFRR. Any orchid species deposited by other collectors was also considered. Thus, 20 genera and 34 species were registered at Tepequém. The genera with largest representation were the Epidendrum (7 spp., Scaphyglottis (4 spp. and Habenaria (3 spp., with 70% of the other genera presenting one species only. 10% of Roraima’s orchid’s diversity is found at Tepequém. The diversity of habitats – forest, campina and savannah – found at Tepequém’s Tepuy allows the Orchidaceae species diversity and the unique flora with low similarities to other floristic surveys.

A reassessment of the Hypoglossum group (Delesseriaceae, Rhodophyta), with a critique of its genera

Science.gov (United States)

Wynne, M. J.

1988-09-01

A reassessment of the Hypoglossum group (Delesseriaceae, Rhodophyta), with a critique of its genera. Eight genera are assigned to the Hypoglossum Kützing, Phitymophora J. Agardh, Pseudobranchioglossum Bodard, and Zellera Martens. The circumscription of the group is emended to include forms with network-forming ( Zellera) an dspirally twisted ( Duckerella) thalli. The definition of the group is lalso modified to include members (e.g. some species of Hypoglossum) in which tetrasporangia are produced by primary cells as in the Caloglossa group. Exogenous branching, a distinguishing feature of the closely related Caloglossa group, never occurs in the Hypoglossum group.

Effects of ion beam irradiation on Oncidium lanceanum orchids

International Nuclear Information System (INIS)

Zaiton Ahmad; Affrida Abu Hassan

2006-01-01

Protocorm-like bodies (PLBs) of an orchid (Oncidium lanceanum) were irradiated using 220 MeV 12 C 5+ ions, accelerated by AVF cyclotron at JAEA, Japan in 2005. Five different doses were applied to the PLBs; 0, 1.0, 2.0, 6.0 and 12.0 Gy. Following irradiation, these PLBs were maintained in cultures for germination and multiplication. Irradiation effects on growth and seedling regeneration patterns as well as molecular characteristics of the in vitro cultures were monitored and recorded. In general, average fresh weights of the irradiated PLBs increased progressively by irradiating the explants at 1.0, 2.0 and reached the maximum at 6.0 Gy. The figure however dropped when the explants were irradiated at 12 Gy. Surprisingly, although the highest average fresh weight was recorded on PLBs irradiated at 6.0 Gy, most of these PLBs were not able to regenerate into complete shoots. On average, after 4 months of irradiation, only 21 seedlings were successfully regenerated from each gram of these PLBs. The highest shoot regeneration was recorded on cultures irradiated at 2.0 Gy in which 102 seedlings were obtained from one gram of the PLBs. Some morphological changes were seen on in vitro plantlets derived from PLBs irradiated at doses of 1.0 and 2.0 Gy. Most of the regenerated seedlings have been transferred to glasshouse for further morphological selection. Molecular analysis showed the presence of DNA polymorphisms among the seedlings from different doses of irradiation. (Author)

Disinfestation and vase-life extension of orchids by irradiation

International Nuclear Information System (INIS)

Piriyathamrong, S.; Chouvalitvongporn, P.; Sudathit, B.

1985-01-01

Studies on disinfestation and vase-life extension of orchids by irradiation were conducted to determine whether gamma-radiation can be effectively used to eliminate thrips and prolong the vase life of cut flowers. Cut flowers of Dendrobium Pompadour were subjected to Co-60 irradiation at 0, 50, l00, l50, and 200 krd doses 5 to 6 hours after picking. The flowers were separated into two groups. The first group was used to count the number of thrips. The other group was held at controlled room temperature (20 0 C and 80 percent RH) for 36 hours before being unpacked and placed in water. The results of two experiments illustrated that at 2 days after irradiation at l50 and 200 krad no thrips were found on the flowers, whereas on flowers untreated and those treated at 50 and l00 krad, a higher number of thrips were detected. As far as the vase life is concerned, treated flowers have a shorter life. Irradiation at 0, 50, l00, l05, and 200 krad doses resulted in average vase life of l8.75, l2.l5, l0.85, 8.85, and 6.20 days, respectively, in the first test and l4.60, l0.05, 8.75, 7.35, and 6.85, respectively, in the second test. Increased doses of radiation caused flowers to wilt and drop off within a few days. Further study is being conducted

Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar.

Science.gov (United States)

Bacon, Christine D; Simmons, Mark P; Archer, Robert H; Zhao, Liang-Cheng; Andriantiana, Jacky

2016-01-01

Of the 97 currently recognized genera of Celastraceae, 19 are native to Madagascar, including six endemics. In this study we conducted the most thorough phylogenetic analysis of Celastraceae yet completed with respect to both character and taxon sampling, and include representatives of five new endemic genera. Fifty-one new accessions, together with 328 previously used accessions of Celastrales, were sampled for morphological characters, two rDNA gene regions, and two plastid gene regions. The endemic Malagasy genera are resolved in two separate lineages-Xenodrys by itself and all other endemic genera in a clade that also includes four lineages inferred to have dispersed from Madagascar: Brexia madagascariensis (Mascarene Islands, coastal Africa), Elaeodendron (West Indies, Africa to New Caledonia), and Pleurostylia (Africa to New Caledonia). Of the 12 extant Malagasy Celastraceae lineages identified, eight are clearly of African origin. The origins of the remaining four lineages are less clear, but reasonable possibilities include America, Eurasia, Africa, southern India, Malesia, and Australia. Based on 95% credible age intervals from fossil-calibrated molecular dating, all 12 extant Malagasy Celastraceae lineages appear to have arisen following dispersal after the separation of Madagascar from other landmasses within the last 70 million years. Copyright © 2015 Elsevier Inc. All rights reserved.

The orchid-bee faunas (Hymenoptera: Apidae of ‘Reserva Ecológica Michelin’, ‘RPPN Serra Bonita’ and one Atlantic Forest remnant in the state of Bahia, Brazil, with new geographic records

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A Nemésio

Full Text Available The orchid bee faunas of two private natural preserves, ‘Reserva Particular do Patrimônio Natural da Serra Bonita’ (RSB and ‘Reserva Ecológica Michelin’ (REM, and a forest fragment inside the campus of the ‘Universidade Estadual de Santa Cruz’, were surveyed for the first time. All three areas constitute Atlantic Forest remnants in the southern portion of the state of Bahia, Brazil. A total of 1,782 males belonging to 32 species were actively collected with insect nets during 90 hours of field work from November, 2009, to January, 2012. Euglossa cyanochlora Moure, 1996—one of the rarest orchid bee species—was found at RSB and REM, the latter representing the northernmost record for this species. Euglossa cognata, Moure, 1970 was found at RSB, the northernmost record for this species in the Atlantic Forest and the only recent record for this species at the northern border of Jequitinhonha river.

Two new genera and three new species of Epipaschiinae Meyrick from China (Lepidoptera, Pyralidae

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Mingqiang Wang

2017-12-01

Full Text Available Two new genera of Epipaschiinae are described. The genus Arcanusa Wang, Chen & Wu, gen. n. is established for Ar. apexiarcanusa Wang, Chen & Wu, sp. n. and Ar. sinuosa (Moore, 1888, comb. n., described in Scopocera Moore, 1888 (junior synonym of Stericta Lederer, 1863. The female genitalia of Ar. sinuosa (Moore, 1888, comb. n. are described for the first time. Androconia Wang, Chen & Wu, gen. n. is erected, including two new species, An. rallusa Wang, Chen & Wu, sp. n. and An. morulusa Wang, Chen & Wu, sp. n. Illustrations of all adults and their genitalia, and a key to the two new genera are provided.

A revision of the haploporinae nicoll, 1914 (digenea: haploporidae) from mullets (mugilidae): two new haploporine genera and a key to the genera of the subfamily.

Science.gov (United States)

Blasco-Costa, Isabel; Montero, Francisco E; Gibson, David I; Balbuena, Juan Antonio; Kostadinova, Aneta

2009-03-01

Two new haploporine genera are established for parasites of mullets. Ragaia n. g. is erected for R. lizae n. sp. from Liza ramado in the Ebro Delta on the Mediterranean Coast of Spain. This new genus is distinguished by the unique combination of the following characters: a strongly muscular ventral sucker which is twice as large as the oral sucker; a large, muscular hermaphroditic sac similar in length to the ventral sucker; a saccular, thick-walled internal seminal vesicle which is larger than the external seminal vesicle; and the ovary and vitellarium located rather close to the posterior extremity. Pseudodicrogaster n. g. is erected to accommodate Dicrogaster japonica Machida, 1996, as P. japonica (Machida, 1996) n. comb., a parasite of Mugil cephalus L. off Fukaura, Japan. This genus is recognised on the basis of: the tubular condition of both the internal and external seminal vesicles, the latter being much shorter than the former; the sucker ratio; the massive pyriform hermaphroditic sac; the location of the testis; and the presence of two eye-spots in developed miracidia. A key to the nine recognised genera of the Haploporinae is presented.

Evidence of separate karyotype evolutionary pathway in Euglossa orchid bees by cytogenetic analyses

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ANDERSON FERNANDES

2013-09-01

Full Text Available Euglossini are solitary bees considered important pollinators of many orchid species. Information regarding chromosome organization is available for only a small number of species in this group. In the present work, the species Euglossa townsendi and E. carolina were analyzed by cytogenetic techniques to collect information that may aid the understanding of their evolution and chromosomal organization. The chromosome number found was n = 21 for males and 2n = 42 for females in the two species. The distribution and amount of heterochromatin regions differed in the two species analyzed, where they were classified as “high” or “low” heterochromatin content, similarly to what has already been performed in social bee species of the genus Melipona. Banding patterns found in this study suggest that other mechanisms may have occurred in the karyotype evolution of this group, unlike those suggested for social bees and ants. Karyotype evolution of solitary bees appears to have occurred as an event separate from other hymenopterans and did not involve chromosome fissions and heterochromatin amplification.

Evidence of separate karyotype evolutionary pathway in Euglossa orchid bees by cytogenetic analyses.

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Fernandes, Anderson; Werneck, Hugo A; Pompolo, Silvia G; Lopes, Denilce M

2013-09-01

Euglossini are solitary bees considered important pollinators of many orchid species. Information regarding chromosome organization is available for only a small number of species in this group. In the present work, the species Euglossa townsendi and E. carolina were analyzed by cytogenetic techniques to collect information that may aid the understanding of their evolution and chromosomal organization. The chromosome number found was n = 21 for males and 2n = 42 for females in the two species. The distribution and amount of heterochromatin regions differed in the two species analyzed, where they were classified as “high” or “low” heterochromatin content, similarly to what has already been performed in social bee species of the genus Melipona. Banding patterns found in this study suggest that other mechanisms may have occurred in the karyotype evolution of this group, unlike those suggested for social bees and ants. Karyotype evolution of solitary bees appears to have occurred as an event separate from other hymenopterans and did not involve chromosome fissions and heterochromatin amplification.

First genome size estimations for some eudicot families and genera

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Garcia, S.

2010-12-01

Full Text Available Genome size diversity in angiosperms varies roughly 2400-fold, although approximately 45% of angiosperm families lack a single genome size estimation, and therefore, this range could be enlarged. To contribute completing family and genera representation, DNA C-Values are here provided for 19 species from 16 eudicot families, including first values for 6 families, 14 genera and 17 species. The sample of species studied is very diverse, including herbs, weeds, vines, shrubs and trees. Data are discussed regarding previous genome size estimates of closely related species or genera, if any, their chromosome number, growth form or invasive behaviour. The present research contributes approximately 1.5% new values for previously unreported angiosperm families, being the current coverage around 55% of angiosperm families, according to the Plant DNA C-Values Database.

La diversidad del tamaño del genoma en angiospermas es muy amplia, siendo el valor más elevado aproximadamente unas 2400 veces superior al más pequeño. Sin embargo, cerca del 45% de las familias no presentan ni una sola estimación, por lo que el rango real podría ser ampliado. Para contribuir a completar la representación de familias y géneros de angiospermas, este estudio contribuye con valores C para 19 especies de 16 familias de eudicoticotiledóneas, incluyendo los primeros valores para 6 familias, 14 géneros y 17 especies. La muestra estudiada es muy diversa, e incluye hierbas, malezas, enredaderas, arbustos y árboles. Se discuten los resultados en función de estimaciones previas del tamaño del genoma de especies o géneros estrechamente relacionados, del número de cromosomas, la forma de crecimiento o el comportamiento invasor de las especies analizadas. El presente estudio contribuye aproximadamente en un 1,5% de nuevos valores para familias de angiospermas no estudiadas previamente, de las que actualmente existe información para el 55%, según la base de datos

Pollen of Sarawakodendron (Celastraceae) and some related genera, with notes on techniques

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Hou, Ding

1969-01-01

1. A simple technique for acetolysis of small quantities of polliniferous (herbarium) material is described and notes on pollen photomicrography are presented. 2. Pollen grains of Sarawakodendron and six related genera, consisting of twenty-nine mostly Malesian species, have been examined and

Phylogenetic reassessment of Specklinia and its allied genera in the pleurothallidinae (Orchidaceae)

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Karremans, Adam P.; Albertazzi, Federico J.; Bakker, Freek T.; Bogarín, Diego; Eurlings, M.C.M.; Pridgeon, Alec; Pupulin, Franco; Gravendeel, Barbara

2016-01-01

The phylogenetic relationships within Specklinia (Pleurothallidinae; Orchidaceae) and related genera are re-evaluated using Bayesian analyses of nrITS and chloroplast matK sequence data of a wide sampling of species. Specklinia is found paraphyletic in the DNA based trees, with species

Kalapuya brunnea gen. & sp. nov. and its relationship to the other sequestrate genera in Morchellaceae.

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Trappe, Matthew J; Trappe, James M; Bonito, Gregory M

2010-01-01

Kalapuya is described as a new, monotypic truffle genus in the Morchellaceae known only from the Pacific northwestern United States. Its relationship to other hypogeous genera within Morchellaceae is explored by phylogenetic analysis of the ribosomal LSU and EF1alpha protein coding region. The type species, K. brunnea, occurs in Douglas-fir forests up to about 50 y old on the west slope of the Cascade Range in Oregon and in the Coastal Ranges of Oregon and northern California. It has a roughened, warty, reddish brown to brown peridium, a solid whitish gleba that develops grayish brown mottling as the spores mature, and produces a cheesy-garlicky odor at maturity. Its smooth, ellipsoid spores resemble those of Morchella spp. but are much larger. The four hypogeous genera known in the Morchellaceae, Kalapuya, Fischerula, Imaia and Leucangium, are distinct from the epigeous genera Morchella and Verpa, but it is uncertain whether they resulted from a single transition to a hypogeous fruiting habit or from multiple independent transitions. Kalapuya, locally known as the Oregon brown truffle, has been commercially harvested for culinary use.

Phylogenetic placement of Dapisostemon gen. nov. and Streptostemon, two tropical heterocytous genera (Cyanobacteria)

Czech Academy of Sciences Publication Activity Database

Hentschke, G. S.; Johansen, J. R.; Pietrasiak, N.; Fiore, M.F.; Rigonato, J.; Sant’Anna, C. L.; Komárek, Jiří

2016-01-01

Roč. 245, č. 2 (2016), s. 129-143 ISSN 1179-3155 Institutional support: RVO:67985939 Keywords : new cyanobacterial genera * phylogeny * tropical habitats Subject RIV: EF - Botanics Impact factor: 1.240, year: 2016

Pre-Clinical Testing of Real-Time PCR Assays for Diarrheal Disease Agents of Genera Escherichia and Shigella

Science.gov (United States)

2014-05-16

FOR DIARRHEAL DISEASE AGENTS OF GENERA ESCHERICHIA AND SHIGELLA May 16, 2014 Reporting Period: October 1, 2010 to September 30, 2013...10-2010 - 30-09-2013 PRE-CLINICAL TESTING OF REAL-TIME PCR ASSAYS FOR DIARRHEAL DISEASE AGENTS OF GENERA ESCHERICHIA AND SHIGELLA ...Texas (MOA 2007 - 2013. Agreement No.: DODI 4000.19; AFI 25-201). Pre-clinical test results qualify ETEC and Shigella real-time PCR assays as lead

Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae.

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Tamara Giguère

Full Text Available Viroids are small, circular, single stranded RNA molecules that infect plants. Since they are non-coding, their structures play a critical role in their life cycles. To date, little effort has been spend on elucidating viroid structures in solution due to both the experimental difficulties and the time-consuming nature of the methodologies implicated. Recently, the technique of high-throughput selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE was adapted for the probing of the members of family Avsunviroidae, all of whom replicate in the chloroplast and demonstrate ribozyme activity. In the present work, twelve viroid species belonging to four different genera of the family Pospiviroidae, whose members are characterized by the presence of a central conserved region (CCR and who replicate in nucleus of the host, were probed. Given that the structures of five distinct viroid species from the family Pospiviroidae have been previously reported, an overview of the different structural characteristics for all genera and the beginning of a manual classification of the different viroids based on their structural features are presented here.

Review of the genera of Conoderinae (Coleoptera, Curculionidae from North America, Central America, and the Caribbean

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Salvatore S. Anzaldo

2017-07-01

Full Text Available The thirty-nine extant genera of Conoderinae known to occur in North America, Central America, and the Caribbean are reviewed based on external morphology. An identification key is provided along with diagnoses, distributions, species counts, and natural history information, when known, for each genus. Morphological character systems of importance for weevil classification are surveyed, potential relationships among the tribes and genera are discussed, and groups most in need of taxonomic and phylogenetic attention are identified. The following genera are transferred to new tribes: Acoptus LeConte, 1876 from the Lechriopini to the Othippiini (new placement and the South American genus Hedycera Pascoe, 1870 from the Lechriopini to the Piazurini (new placement. Philides Champion, 1906 and Philinna Champion, 1906 are transferred from the Lechriopini to Conoderinae incertae sedis (new placement although their placement as conoderines is uncertain. The species Copturomimus cinereus Heller, 1895 is designated as the type species of the genus Copturomimus Heller, 1895.

New genera and species of the tribe Taphurini (Hemiptera, Cicadidae) from Sundaland

NARCIS (Netherlands)

Duffels, J.P.

2011-01-01

Three new genera and five species of Taphurini from Sundaland (Malayan Peninsula, Sumatra, Borneo and Java) are described: Sundabroma including S. bimaculata sp. n. from Borneo and S. suffusca sp. n. from the Malayan Peninsula, Allobroma including A. kedenburgi (Breddin, 1905) comb. n. from Borneo

Vanillin - Bioconversion and Bioengineering of the most popular plant flavour and its de novo biosynthesis in the vanilla orchid.

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Gallage, Nethaji J; Moeller, Birger Lindberg

2014-09-30

During recent years, biotechnology derived production of flavours and fragrances have expanded rapidly. The world's most popular flavour vanillin is no exception. This review outlines the current state of biotechnology-based vanillin synthesis with the use of ferulic acid, eugenol and glucose as substrates and bacteria, fungi and yeasts as microbial production hosts. The elucidated de novo biosynthetic pathway of vanillin in the vanilla orchid and the possible applied uses of this new knowledge in the biotechnology derived and pod-based vanillin industries are also highlighted. © The Author 2014. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.

A Fuzzy mathematical model to estimate the effects of global warming on the vitality of Laelia purpurata orchids.

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Putti, Fernando Ferrari; Filho, Luis Roberto Almeida Gabriel; Gabriel, Camila Pires Cremasco; Neto, Alfredo Bonini; Bonini, Carolina Dos Santos Batista; Rodrigues Dos Reis, André

2017-06-01

This study aimed to develop a fuzzy mathematical model to estimate the impacts of global warming on the vitality of Laelia purpurata growing in different Brazilian environmental conditions. In order to develop the mathematical model was considered as intrinsic factors the parameters: temperature, humidity and shade conditions to determine the vitality of plants. Fuzzy model results could accurately predict the optimal conditions for cultivation of Laelia purpurata in several sites of Brazil. Based on fuzzy model results, we found that higher temperatures and lacking of properly shading can reduce the vitality of orchids. Fuzzy mathematical model could precisely detect the effect of higher temperatures causing damages on vitality of plants as a consequence of global warming. Copyright © 2017 Elsevier Inc. All rights reserved.

Gibberellic acid and water regime in the flowering induction of Brassocattleya and Cattleya hybrid orchids Ácido giberélico e regime hídrico na indução do florescimento de orquídeas Brassocattleya e Cattleya híbridas

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Jean C Cardoso

2010-12-01

Full Text Available The influence of gibberellic acid (GA3 and water regime was evaluated in the flowering induction and quality of two orchid hybrids belonging to the genera Cattleya (C. and Brassocattleya (Bc.. The experiment was carried out in the Biotechnology and Orchid Culture Sector of Shunji Nishimura Technology Foundation, Pompéia, São Paulo State, Brazil. Five GA3 concentrations (0, 125, 250, 500 and 1,000 mg L-1 were tested through four consecutive leaf applications in adult plants that had already flowered at least once, besides two water conditions (one and four irrigations per week. Applications were performed in October and November for Bc. Marcella Koss and in January and February for C. Irene Holguin. Flowering could not be induced in the latter by gibberellic acid. In Bc. Marcella Koss, the application of 250 mg L-1 GA3 combined with decreased irrigation frequency induced flowering in around 83% plants. By using the same GA3 concentration but frequent irrigation, only 17% plants were induced to flower. The number and size of flowers increased after application of higher GA3 concentrations. This work allowed developing a commercial technique with the use of gibberellic acid (GA3 to induce flowering in Bc. Marcella Koss hybrid orchid.No presente trabalho foi avaliada a influência do ácido giberélico e do regime hídrico na indução e qualidade do florescimento de duas orquídeas híbridas dos gêneros Cattleya (C. e Brassocattleya (Bc.. O experimento foi realizado no Setor de Biotecnologia e Orquidicultura da Fundação Shunji Nishimura de Tecnologia, Pompéia-SP. Foram testadas cinco concentrações de GA3 (0, 125, 250, 500 e 1.000 mg L-1 em quatro aplicações consecutivas via pulverização foliar, em plantas adultas que já haviam florescido ao menos uma vez, além de duas condições hídricas (uma e quatro irrigações por semana. As aplicações foram feitas nos meses de outubro e novembro para Bc. Marcella Koss e janeiro e fevereiro

Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms.

Science.gov (United States)

Sabath, Niv; Goldberg, Emma E; Glick, Lior; Einhorn, Moshe; Ashman, Tia-Lynn; Ming, Ray; Otto, Sarah P; Vamosi, Jana C; Mayrose, Itay

2016-02-01

Dioecy, the sexual system in which male and female organs are found in separate individuals, allows greater specialization for sex-specific functions and can be advantageous under various ecological and environmental conditions. However, dioecy is rare among flowering plants. Previous studies identified contradictory trends regarding the relative diversification rates of dioecious lineages vs their nondioecious counterparts, depending on the methods and data used. We gathered detailed species-level data for dozens of genera that contain both dioecious and nondioecious species. We then applied a probabilistic approach that accounts for differential speciation, extinction, and transition rates between states to examine whether there is an association between dioecy and lineage diversification. We found a bimodal distribution, whereby dioecious lineages exhibited higher diversification in certain genera but lower diversification in others. Additional analyses did not uncover an ecological or life history trait that could explain a context-dependent effect of dioecy on diversification. Furthermore, in-depth simulations of neutral characters demonstrated that such bimodality is also found when simulating neutral characters across the observed trees. Our analyses suggest that - at least for these genera with the currently available data - dioecy neither consistently places a strong brake on diversification nor is a strong driver. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Environmental niche conservatism explains the accumulation of species richness in Mediterranean-hotspot plant genera.

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Skeels, Alexander; Cardillo, Marcel

2017-03-01

The causes of exceptionally high plant diversity in Mediterranean-climate biodiversity hotspots are not fully understood. We asked whether a mechanism similar to the tropical niche conservatism hypothesis could explain the diversity of four large genera (Protea, Moraea, Banksia, and Hakea) with distributions within and adjacent to the Greater Cape Floristic Region (South Africa) or the Southwest Floristic Region (Australia). Using phylogenetic and spatial data we estimated the environmental niche of each species, and reconstructed the mode and dynamics of niche evolution, and the geographic history, of each genus. For three genera, there were strong positive relationships between the diversity of clades within a region and their inferred length of occupation of that region. Within genera, there was evidence for strong evolutionary constraint on niche axes associated with climatic seasonality and aridity, with different niche optima for hotspot and nonhotspot clades. Evolutionary transitions away from hotspots were associated with increases in niche breadth and elevated rates of niche evolution. Our results point to a process of "hotspot niche conservatism" whereby the accumulation of plant diversity in Mediterranean-type ecosystems results from longer time for speciation, with dispersal away from hotspots limited by narrow and phylogenetically conserved environmental niches. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Phytogeographical analysis of seed plant genera in China.

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Qian, Hong; Wang, Silong; He, Jin-Sheng; Zhang, Junli; Wang, Lisong; Wang, Xianli; Guo, Ke

2006-11-01

A central goal of biogeography and ecology is to uncover and understand distributional patterns of organisms. China has long been a focus of attention because of its rich biota, especially with respect to plants. Using 290 floras from across China, this paper quantitatively characterizes the composition of floristic elements at multiple scales (i.e. national, provincial and local), and explores the extent to which climatic and geographical factors associated with each flora can jointly and independently explain the variation in floristic elements in local floras. A study was made of 261 local floras, 28 province-level floras and one national-level flora across China. Genera of seed plants in each flora were assigned to 14 floristic elements according to their worldwide geographical distributions. The composition of floristic elements was related to climatic and geographical factors. Variations in percentages of cosmopolitan, tropical and temperate genera among local floras tend to be greater at higher latitudes than at lower latitudes. Latitude is strongly correlated with the proportions of 13 of the 14 floristic elements. Correlations of the proportions of floristic elements with longitude are much weaker than those with latitude. Climate represented by the first principal component of a principal component analysis was strongly correlated with the proportions of floristic elements in local floras (|r| = 0.75 +/- 0.18). Geographical coordinates independently explained about four times as much variation in floristic elements as did climate. Further research is necessary to examine the roles of water-energy dynamics, geology, soils, biotic interactions, and historical factors such as land connections between continents in the past and at present in creating observed floristic patterns.

The dilemma of being a fragrant flower: the major floral volatile attracts pollinators and florivores in the euglossine-pollinated orchid Dichaea pendula.

Science.gov (United States)

Nunes, Carlos E P; Peñaflor, Maria Fernanda G V; Bento, José Maurício S; Salvador, Marcos José; Sazima, Marlies

2016-12-01

Volatile organic compounds (VOCs) mediate both mutualistic and antagonistic plant-animal interactions; thus, the attraction of mutualists and antagonists by floral VOCs constitutes an important trade-off in the evolutionary ecology of angiosperms. Here, we evaluate the role of VOCs in mediating communication between the plant and its mutualist and antagonist floral visitors. To assess the evolutionary consequences of VOC-mediated signalling to distinct floral visitors, we studied the reproductive ecology of Dichaea pendula, assessing the effects of florivores on fruit set, the pollination efficiency of pollinators and florivores, the floral scent composition and the attractiveness of the major VOC to pollinators and florivores. The orchid depends entirely on orchid-bees for sexual reproduction, and the major florivores, the weevils, feed on corollas causing self-pollination, triggering abortion of 26.4 % of the flowers. Floral scent was composed of approximately 99 % 2-methoxy-4-vinylphenol, an unusual floral VOC attractive to pollinators and florivores. The low fruit set from natural pollination (5.6 %) compared to hand cross-pollination (45.5 %) and low level of pollinator visitation [0.02 visits (flower hour) -1 ] represent the limitations to pollination. Our research found that 2-methoxy-4-vinylphenol mediates both mutualistic and antagonistic interactions, which could result in contrary evolutionary pressures on novo-emission. The scarcity of pollinators, not florivory, was the major constraint to fruit set. Our results suggest that, rather than anti-florivory adaptations, adaptations to enhance pollinator attraction and cross-pollination might be the primary drivers of the evolution of VOC emission in euglossine-pollinated flowers.

Being and «genera» of being in Ancient Stoicism. A relevant ontological distinction applied to ethics and action theory

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Marcelo D. Boeri

2014-11-01

Full Text Available This paper is focused on the Stoic doctrine of genera of being and the way in which such a doctrine appears to function in ethics and in action theory. In section I, the soul-body problem in Aristotle is briefly discussed; I argue that, in order to overcome the difficulties of the relation between soul and body in a psychology maintaining that the soul is an immaterial entity, the Stoics were willing to endorse a physicalist psychology. Second, I offer an account of the Stoic ontology and attempt to show the role of each genera of being in such an ontology. In section III I return to the Stoic genera of being but concentrating on the suitable connections to make more persuasive the thesis that the Stoic genera of being should play a role in ethics and in action theory. Finally, in section IV I present some concluding remarks.

Florae Malesianae Precursores XXXIV. Notes on some genera of Celastraceae in Malaysia

NARCIS (Netherlands)

Hou, Ding

1963-01-01

There is a great diversity of opinion regarding the interpretation of the genera and some species in the former Hippocrateaceae. If one reads the comprehensive and detailed revision of the New World Hippocrateaceae by A. C. Smith (Brittonia 3, 1940, 341—555), one may have an impression of it. For

Summing over all genera for d>1: A toy model

International Nuclear Information System (INIS)

Ambjoern, J.; Durhuus, B.; Jonsson, T.

1990-04-01

We consider a reduced model of discretized random surfaces which is believed to be a good approximation to the standard theory of discretized random surfaces for large dimensions d. In this model we observe multicritical behaviour. The relation between internal observables, in the sense of two-dimensional gravity, and external observables, in the sense of string theory, can be studied in detail. Furthermore, it is possible to perform explicitly the summation over all genera in this model. (orig.)

Multiple shifts to different pollinators fuelled rapid diversification in sexually deceptive Ophrys orchids.

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Breitkopf, Hendrik; Onstein, Renske E; Cafasso, Donata; Schlüter, Philipp M; Cozzolino, Salvatore

2015-07-01

Episodes of rapid speciation provide unique insights into evolutionary processes underlying species radiations and patterns of biodiversity. Here we investigated the radiation of sexually deceptive bee orchids (Ophrys). Based on a time-calibrated phylogeny and by means of ancestral character reconstruction and divergence time estimation, we estimated the tempo and mode of this radiation within a state-dependent evolutionary framework. It appears that, in the Pleistocene, the evolution of Ophrys was marked by episodes of rapid diversification coinciding with shifts to different pollinator types: from wasps to Eucera bees to Andrena and other bees. An abrupt increase in net diversification rate was detected in three clades. Among these, two phylogenetically distant lineages switched from Eucera to Andrena and other bees in a parallel fashion and at about the same time in their evolutionary history. Lack of early radiation associated with the evolution of the key innovation of sexual deception suggests that Ophrys diversification was mainly driven by subsequent ecological opportunities provided by the exploitation of novel pollinator groups, encompassing many bee species slightly differing in their sex pheromone communication systems, and by spatiotemporal fluctuations in the pollinator mosaic. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

Asymbiotic germination in vitro in seeds of four species of Cuban orchids

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Loexis Rodríguez

2001-04-01

Full Text Available About the most of 300 species of Cuban native orchids is have few reference of the micropropagation in the science literature. However, the biotechnical techniques fulfill an important acting in the rescue of threatened species. By that in the laboratory of Vegetable Biotechnology of the Mountain Development Center in Guantanamo, aspects related with the germination were studied in vitro of Campylocentrum micrantrum, Encyclia cochleata, Epidendrum difforme and Oceoclade maculata using the salts of the culture medium Murashige and Skoog (1962 and Knudson (1946, increasing with activate charcoal (0; 1; 2 g.l-1, Agar tachnical No. 3 6 g.l-1 and the adjusted pH at 5.6. The seeds was incubated under conditions of 16 hours light to intensity of 27 uMol.m².s-¹ and 24 ± 1 °C. The reached results showed that the germination of the studied species was obtained under different times and conditions of the medium of cultivation where it stood out for the smallest time used for the germination Encyclia cochleata to the eight weeks in the salts of Murashige and Skoog (1962 and without the addition of activated charcoal, as long as Oceoclade maculata needed 24 weeks to germinate. Key words: antioxidante, biotechnology, flowers, micropropagación, native species

New genera and species of leaf beetles (Coleoptera: Chrysomelidae) from China and South Korea

Science.gov (United States)

Two new genera from China (Taumaceroides Lopatin and Yunnaniata Lopatin) and 11 new species (Smaragdina quadrimaculata Lopatin, Smaragdina oblongum Lopatin, Hyphaenia volkovitshi Lopatin, Arthrotus daliensis Lopatin, Taumaceroides sinicus Lopatin, Yunnaniata konstantinovi Lopatin, Calomicrus yunnanu...

New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera

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Erik van Nieukerken

2016-10-01

Full Text Available After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new genera and nine new species are here described from the Neotropics: Stigmella gallicola van Nieukerken & Nishida, sp. n. reared from galls on Hampea appendiculata (Malvaceae in Costa Rica, representing the first example of a gall making Stigmella; S. schinivora van Nieukerken, sp. n. reared from leafmines on Schinus terebinthifolia (Anacardiaceae in Argentina, Misiones; S. costaricensis van Nieukerken & Nishida, sp. n. and S. intronia van Nieukerken & Nishida, sp. n. each from a single specimen collected the same night in Costa Rica, Parque Nacional Chirripó; S. molinensis van Nieukerken & Snyers, sp. n. reared from leafmines on Salix humboldtiana, Peru, Lima, the first Neotropical species of the Stigmella salicis group sensu stricto; Ozadelpha van Nieukerken, gen. n. with type species O. conostegiae van Nieukerken & Nishida, sp. n., reared from leafmines on Conostegia oerstediana (Melastomataceae from Costa Rica; Neotrifurcula van Nieukerken, gen. n. with type species N. gielisorum van Nieukerken, sp. n. from Chile; Hesperolyra van Nieukerken, gen. n.. with type species Fomoria diskusi Puplesis & Robinson, 2000; Hesperolyra saopaulensis van Nieukerken, sp. n., reared from an unidentified Myrtaceae, Sao Paulo, Brasil; and Acalyptris janzeni van Nieukerken & Nishida, sp. n. from Costa Rica, Guanacaste. Five new combinations are made: Ozadelpha ovata (Puplesis & Robinson, 2000, comb. n. and Ozadelpha guajavae (Puplesis & Diškus, 2002, comb. n., Hesperolyra diskusi (Puplesis & Robinson, 2000, comb. n., Hesperolyra molybditis (Zeller, 1877, comb. n. and Hesperolyra repanda (Puplesis & Diškus, 2002, comb. n. Three specimens are briefly described, but

New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera)

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van Nieukerken, Erik J.; Doorenweerd, Camiel; Nishida, Kenji; Snyers, Chris

2016-01-01

Abstract After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new genera and nine new species are here described from the Neotropics: Stigmella gallicola van Nieukerken & Nishida, sp. n. reared from galls on Hampea appendiculata (Malvaceae) in Costa Rica, representing the first example of a gall making Stigmella; Stigmella schinivora van Nieukerken, sp. n. reared from leafmines on Schinus terebinthifolia (Anacardiaceae) in Argentina, Misiones; Stigmella costaricensis van Nieukerken & Nishida, sp. n. and Stigmella intronia van Nieukerken & Nishida, sp. n. each from a single specimen collected the same night in Costa Rica, Parque Nacional Chirripó; Stigmella molinensis van Nieukerken & Snyers, sp. n. reared from leafmines on Salix humboldtiana, Peru, Lima, the first Neotropical species of the Stigmella salicis group sensu stricto; Ozadelpha van Nieukerken, gen. n. with type species Ozadelpha conostegiae van Nieukerken & Nishida, sp. n., reared from leafmines on Conostegia oerstediana (Melastomataceae) from Costa Rica; Neotrifurcula van Nieukerken, gen. n. with type species Neotrifurcula gielisorum van Nieukerken, sp. n. from Chile; Hesperolyra van Nieukerken, gen. n.. with type species Fomoria diskusi Puplesis & Robinson, 2000; Hesperolyra saopaulensis van Nieukerken, sp. n., reared from an unidentified Myrtaceae, Sao Paulo, Brasil; and Acalyptris janzeni van Nieukerken & Nishida, sp. n. from Costa Rica, Guanacaste. Five new combinations are made: Ozadelpha ovata (Puplesis & Robinson, 2000), comb. n. and Ozadelpha guajavae (Puplesis & Diškus, 2002), comb. n., Hesperolyra diskusi (Puplesis & Robinson, 2000), comb. n., Hesperolyra molybditis (Zeller, 1877), comb. n. and Hesperolyra repanda (Puplesis & Diškus, 2002), comb. n

Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America

Science.gov (United States)

Daniel L. Lindner; Mark T. Banik

2008-01-01

Phylogenetic relationships were investigated among North American species of Laetiporus, Leptoporus, Phaeolus, Pycnoporellus, and Wolfiporia using ITS, nuclear large subunit and mitochondrial small subunit rDNA sequences. Members of these genera have poroid hymenophores, simple septate hyphae and cause brown rots in a variety of...

Elliptic Genera of Symmetric Products and Second Quantized Strings

CERN Document Server

Dijkgraaf, R; Verlinde, Erik; Verlinde, Herman L

1997-01-01

In this note we prove an identity that equates the elliptic genus partition function of a supersymmetric sigma model on the $N$-fold symmetric product $M^N/S_N$ of a manifold $M$ to the partition function of a second quantized string theory on the space $M \\times S^1$. The generating function of these elliptic genera is shown to be (almost) an automorphic form for $O(3,2,\\Z)$. In the context of D-brane dynamics, this result gives a precise computation of the free energy of a gas of D-strings inside a higher-dimensional brane.

Two new genera and two new species of proteocephalidean tapeworms (Eucestoda) from reptiles and amphibians in Australia.

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de Chambrier, Sophie; de Chambrier, Alain

2010-11-01

The examination of the type series of Ophiotaenia Gallardi (Johnston, 1911) (syn. Proteocephalus gallardi Johnston, 1911) revealed that it is a mixture of two species of different genera. Lectotype of Ophiotaenia gallardi is designated and the species is redescribed on the basis of it, conspecific paralectotypes and additional materials. The remaining part of the type series belongs to Vandiermenia gen. n. (Acanthotaeniinae), with V Beveridgei sp. n. as the type- and only species. The new genus differs from all other acanthotaeniine genera, i.e. Rostellotaenia Freze, 1963, Acanthotaenia von Linstow, 1903 and Kapsulotaenia Freze, 1963, by the presence of cortical uterine stem and paramuscular vitelline follicles, particular structure of the internal longitudinal musculature (absent laterally and more developed than in the three above-mentioned genera) and testes limited in two fields separated medially. Type series of Ophiotaenia mjobergi (Nybelin, 1917) (syn. Crepidobothrium mjobergi Nybelin, 1917), O. amphiboluri (Nybelin, 1917) (syn. Crepidobothrium amphiboluri Nybelin, 1917), O. striata (Johnston, 1914) (syn. Acanthotaenia striata Johnston, 1914) and O. longmani Johnston, 1916 are revised and compared with Ophiotaenia gallardi. Australotaenia hylae (Johnston, 1912) comb. n. is proposed for Ophiotaenia hylae Johnston, 1912. Australotaenia gen. n. differs from the remaining genera of the subfamily Acanthotaeniinae by (1) the Type 2 of the formation of the uterus (sensu de Chambrier et al. 2004) (all the other acanthotaeniines have the Type 1 of uterine development), (2) the cortical position of the uterine stem (all the other genera have medullary uterine stem) and (3) the morphology of the internal longitudinal musculature, which is composed of few well-developed bundles of fibres (in contrast to the other genera). The new genus also differs from ãby eggs not in clusters, the presence of two testicular fields (versus one in Vandiermenia) and the structure of the

Orchid bee baits attracting bees of the genus Megalopta (Hymenoptera, Halictidae) in Bauru region, São Paulo, Brazil: abundance, seasonality, and the importance of odors for dim-light bees

OpenAIRE

Fátima R. N. Knoll; Leandro M. Santos

2012-01-01

Nocturnal bees in the genus Megalopta Smith, 1853 are generally collected using artificial light sources. However, between 1993 and 2000, a total of 946 females (no males were captured) were captured using aromatic baits commonly used for orchid bees (Euglossini) in five localities in Bauru region, São Paulo, Brazil. Aromatic compounds used in bait traps were: benzyl acetate, eucalyptol, eugenol, skatole, methyl salicylate, and vanillin. The Megalopta species collected were: M. guimaraesi (71...

Neotropical genera of Naucoridae (Hemiptera: Heteroptera: Nepomorpha): new species of Placomerus and Procryphocricos from Guyana and Venezuela.

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Sites, Robert W; Camacho, Jesús

2014-01-09

The Neotropical fauna of saucer bugs (Naucoridae) currently includes four monotypic genera. Recent extensive collecting in Venezuela has produced three new species in two of these genera. In addition, undetermined Guyanan specimens of one of the new species were found in the United States National Museum of Natural History. Thus, described here are Placomerus obscuratus n. sp. from Guyana and Venezuela with brachypterous and macropterous hindwing forms, and two species of Procryphocricos from Venezuela. Procryphocricos quiu n. sp. is described from the brachypterous forewing form and Procryphocricos macoita n. sp. from both brachypterous and macropterous forms. Previously described species also are discussed.

An illustrated key to nymphs of Perlidae (Insecta, Plecoptera genera in Central Amazonia, Brazil

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Hamada Neusa

2003-01-01

Full Text Available An illustrated key to nymphs of Perlidae collected in streams of Central Amazonia, Brazil is provided. Three genera are reported for this region: Macrogynoplax Enderlein, Anacroneuria Klapálek and Enderleina Jewett. Additional diagnostic characters are provided for Enderleina nymphs.

The effect of different growth media, carbon source and pgrs on dendrobium broga giant orchid's protocorm-like bodies (plbs) proliferation supported with sem and tem analysis

International Nuclear Information System (INIS)

Uddain, J.; Gnasekaran, P.; Zakaria, L.

2015-01-01

Dendrobium Broga Giant (Dendrobium Bobby Messina * Dendrobium Superbiens) is a new orchid hybrid in Malaysia. The aim of this study was to investigate the effect of different growth media, carbon sources and PGRs on Dendrobium Broga Giant orchid's protocorm-like bodies (PLBs) proliferation supported with SEM and TEM analysis. The PLBs were cultured on different strength of semi-solid and liquid MS medium and the proliferation rate was recorded based on the fresh weight basis. The maximum PLBs proliferation (12.31% 0.57) was obtained in MS semi-solid medium. PLBs were cultured on MS semi-solid media supplemented with different sucrose concentrations (0, 10, 20, 30 and 40 g L-1). The highest proliferation rate of PLBs (15.48% 1.20) was recorded from MS supplemented with 20 g L-1 sucrose. Different concentrations of BAP (0, 0.5, 1.0, 2.0 mg.L-1) and NAA (0, 0.5, 1.0, 2.0 mgL-1) were added to MS semi-solid medium. Combinations of 1.0 mg L-1 BAP and 0.5 mg.L-1 NAA produced higher PLBs proliferation. Micromorphological studies by SEM and TEM displayed trichome, leaf primordial, stomata, various sizes of mitochondria, vacuoles, different shapes of chloroplast were found in PLBs which ameliorated the slow proliferation nature of plantlets. (author)

Actuarial senescence in a long-lived orchid challenges our current understanding of ageing.

Science.gov (United States)

Dahlgren, Johan Petter; Colchero, Fernando; Jones, Owen R; Øien, Dag-Inge; Moen, Asbjørn; Sletvold, Nina

2016-11-16

The dominant evolutionary theory of actuarial senescence-an increase in death rate with advancing age-is based on the concept of a germ cell line that is separated from the somatic cells early in life. However, such a separation is not clear in all organisms. This has been suggested to explain the paucity of evidence for actuarial senescence in plants. We used a 32 year study of Dactylorhiza lapponica that replaces its organs each growing season, to test whether individuals of this tuberous orchid senesce. We performed a Bayesian survival trajectory analysis accounting for reproductive investment, for individuals under two types of land use, in two climatic regions. The mortality trajectory was best approximated by a Weibull model, showing clear actuarial senescence. Rates of senescence in this model declined with advancing age, but were slightly higher in mown plots and in the more benign climatic region. At older ages, senescence was evident only when accounting for a positive effect of reproductive investment on mortality. Our results demonstrate actuarial senescence as well as a survival-reproduction trade-off in plants, and indicate that environmental context may influence senescence rates. This knowledge is crucial for understanding the evolution of demographic senescence and for models of plant population dynamics. © 2016 The Author(s).

Actuarial senescence in a long-lived orchid challenges our current understanding of ageing

Science.gov (United States)

Colchero, Fernando; Jones, Owen R.; Øien, Dag-Inge; Moen, Asbjørn; Sletvold, Nina

2016-01-01

The dominant evolutionary theory of actuarial senescence—an increase in death rate with advancing age—is based on the concept of a germ cell line that is separated from the somatic cells early in life. However, such a separation is not clear in all organisms. This has been suggested to explain the paucity of evidence for actuarial senescence in plants. We used a 32 year study of Dactylorhiza lapponica that replaces its organs each growing season, to test whether individuals of this tuberous orchid senesce. We performed a Bayesian survival trajectory analysis accounting for reproductive investment, for individuals under two types of land use, in two climatic regions. The mortality trajectory was best approximated by a Weibull model, showing clear actuarial senescence. Rates of senescence in this model declined with advancing age, but were slightly higher in mown plots and in the more benign climatic region. At older ages, senescence was evident only when accounting for a positive effect of reproductive investment on mortality. Our results demonstrate actuarial senescence as well as a survival–reproduction trade-off in plants, and indicate that environmental context may influence senescence rates. This knowledge is crucial for understanding the evolution of demographic senescence and for models of plant population dynamics. PMID:27852801

Body size, reproductive biology and abundance of the rare pseudoboini snakes genera Clelia and Boiruna (Serpentes, Colubridae) in Brazil

OpenAIRE

Lígia Pizzatto

2005-01-01

Pseudoboini snakes of the genera Clelia and Boiruna are apparently rare in nature and certainly rare in collections. This work presents data on body size, reproduction and abundance of five Brazilian species of these genera, in the largest collection of snakes in Latin America, the Instituto Butantan. Despite scarcity of data, follicular cycle seems to be continuous in most species, except Clelia rustica, which occurs in highlands. Females are largerthan males in all species, and fecundity is...

Bolivian Rhinotragini VIII: new genera and species related to Pseudophygopoda Tavakilian & Peñaherrera-Leiva, 2007 (Coleoptera, Cerambycidae

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Robin O.S. Clarke

2014-01-01

Full Text Available Pseudophygopoda Tavakilian & Peñaherrera-Leiva, 2007 is redescribed. Four new, closely related genera are described. Panamapoda gen. nov., with P. panamensis (Giesbert, 1996; Paraphygopoda gen nov., with Paraphygopoda nappae sp. nov., P. albitarsis (Klug, 1825, P. viridimicans (Fisher, 1952, and, provisionally, P. longipennis (Zajciw, 1963; Para melitta gen. nov., with Paramelitta wappesi sp. nov., and P. aglaia (Newman, 1840; and Phygomelitta gen. nov., with one species, P. triangularis (Fuchs, 1961. All the species are illustrated (including genitalia; and keys to the genera, and their species, are provided.

Further studies on the Pselaphodes complex of genera from China (Coleoptera, Staphylinidae, Pselaphinae).

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Yin, Zi-Wei; Hlaváč, Peter; Li, Li-Zhen

2013-01-01

New data on the Pselaphodes complex of genera (Pselaphitae: Tyrini) from China is presented. The generic limits of Labomimus Sharp and Pselaphodes Westwood are discussed and expanded. A revised key to the genera of the Pselaphodes complex is provided. New geographic evidence suggests that previously believed wide-spread species Pselaphodes tianmuensis Yin, Li & Zhao contains a number of related species, resulting in a division of the species to nine separate taxa. Fourteen new species belonging to three genera are diagnosed, described and illustrated: Dayao emeiensis Yin & Li, sp. n. (Sichuan), Labomimus fimbriatus Yin & Hlaváč, sp. n. (Yunnan), Labomimus jizuensis Yin & Hlaváč, sp. n. (Yunnan), Labomimus simplicipalpus Yin & Hlaváč, sp. n. (Sichuan), Pselaphodes anhuianus Yin & Li, sp. n. (Anhui), Pselaphodes daii Yin & Hlaváč, sp. n. (Sichuan), Pselaphodes grebennikovi Yin & Hlaváč, sp. n. (Yunnan), Pselaphodes hainanensis Yin & Li, sp. n. (Hainan), Pselaphodes kuankuoshuiensis Yin & Li, sp. n. (Guizhou), Pselaphodes longilobus Yin & Hlaváč, sp. n. (Hunbei, Yunnan), Pselaphodes monoceros Yin & Hlaváč, sp. n. (Xizang), Pselaphodes pengi Yin & Li, sp. n. (Sichuan), Pselaphodes tiantongensis Yin & Li, sp. n. (Zhejiang) and Pselaphodes wrasei Yin & Li, sp. n. (Yunnan). Labomimus sichuanicus Hlaváč, Nomura & Zhou (Sichuan) is redescribed and illustrated based on a paratype and the material from the type locality. Two recently described species, Pselaphodes tibialis Yin & Li (Yunnan), and Pselaphodes venustus Yin & Li (Yunnan), are transferred to Labomimus (comb. n.) due to the presence of a median metaventral fovea. New locality data is provided for Pselaphodes aculeus Yin, Li & Zhao (Anhui, Fujian, Guangxi, Hainan, Yunnan), Pselaphodes maoershanus Yin & Li (Guangxi, Guizhou), Pselaphodes tianmuensis (Zhejiang, Anhui, Fujian, Jiangxi, Guangxi) and Pselaphodes pectinatus Yin, Li & Zhao (Hainan), with the aedeagus newly illustrated for the latter species.

Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex

NARCIS (Netherlands)

Gruyter, de J.; Aveskamp, M.M.; Woudenberg, J.H.C.; Verkley, G.J.M.; Groenewald, J.Z.; Crous, P.W.

2009-01-01

The present generic concept of Phoma is broadly defined, with nine sections being recognised based on morphological characters. Teleomorph states of Phoma have been described in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma anamorphs represent a

Conspectus of the genera Scurrula L. and Taxillus Tieghem (Loranthaceae) in the Malesian region

NARCIS (Netherlands)

Barlow, Bryan A.

1991-01-01

The closely related genera Scurrula and Taxillus are reviewed for the Malesian region as a precursor to a treatment for Flora Malesiana. Scurrula is represented in the region by 8 species, of which S. aphodastrica and S. didyma are described as new. Taxillus is represented by one species, T.

New genera and species of gall midges (Diptera, Cecidomyiidae from three restingas of Rio de Janeiro State, Brazil

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Valéria Cid Maia

2001-07-01

Full Text Available Five new genera and fourteen new species of gall midges from restingas of Rio de Janeiro State are described. The larva, pupa, male, female and gall are described for each species. The new genera are: Arrabidaeamyia, Epihormomyia, Manilkaramyia, Mayteniella and Parazalepidota. The new species are: Arrabidaeamyia serrata, Asphondylia peploniae, Clinodiplosis diodiae, Clinodiplosis profusa, Clusiamyia granulosa, Dasineura couepiae, Epihormomyia miconiae, Lopesia grandis, Lopesia marginalis, Lopesia singularis, Manilkaramyia notabilis, Mayteniella distincta, Parazalepidota clusiae and Paulliniamyia ampla. Also, the larva of a previously described species, Clusiamyia nitida Maia, 1996 is described and Asphondylia byrsonimae Maia & Couri is transferred to Bruggmaniella.

Why Do Floral Perfumes Become Different? Region-Specific Selection on Floral Scent in a Terrestrial Orchid

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Gross, Karin; Sun, Mimi; Schiestl, Florian P.

2016-01-01

Geographically structured phenotypic selection can lead to adaptive divergence. However, in flowering plants, such divergent selection has rarely been shown, and selection on floral signals is generally little understood. In this study, we measured phenotypic selection on display size, floral color, and floral scent in four lowland and four mountain populations of the nectar-rewarding terrestrial orchid Gymnadenia odoratissima in two years. We also quantified population differences in these traits and pollinator community composition. Our results show positive selection on display size and positive, negative, or absence of selection on different scent compounds and floral color. Selection on the main scent compounds was consistently stronger in the lowlands than in the mountains, and lowland plants emitted higher amounts of most of these compounds. Pollinator community composition also differed between regions, suggesting different pollinators select for differences in floral volatiles. Overall, our study is the first to document consistent regional differences in selection on floral scent, suggesting this pattern of selection is one of the evolutionary forces contributing to regional divergence in floral chemical signaling. PMID:26886766

Evolution in the block: common elements of 5S rDNA organization and evolutionary patterns in distant fish genera.

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Campo, Daniel; García-Vázquez, Eva

2012-01-01

The 5S rDNA is organized in the genome as tandemly repeated copies of a structural unit composed of a coding sequence plus a nontranscribed spacer (NTS). The coding region is highly conserved in the evolution, whereas the NTS vary in both length and sequence. It has been proposed that 5S rRNA genes are members of a gene family that have arisen through concerted evolution. In this study, we describe the molecular organization and evolution of the 5S rDNA in the genera Lepidorhombus and Scophthalmus (Scophthalmidae) and compared it with already known 5S rDNA of the very different genera Merluccius (Merluccidae) and Salmo (Salmoninae), to identify common structural elements or patterns for understanding 5S rDNA evolution in fish. High intra- and interspecific diversity within the 5S rDNA family in all the genera can be explained by a combination of duplications, deletions, and transposition events. Sequence blocks with high similarity in all the 5S rDNA members across species were identified for the four studied genera, with evidences of intense gene conversion within noncoding regions. We propose a model to explain the evolution of the 5S rDNA, in which the evolutionary units are blocks of nucleotides rather than the entire sequences or single nucleotides. This model implies a "two-speed" evolution: slow within blocks (homogenized by recombination) and fast within the gene family (diversified by duplications and deletions).

Synopsis Of The subfamily Spiranthoideae (Orchidaceae) In Colombia, Part II

International Nuclear Information System (INIS)

Duenas Gomez, Hilda del Carmen; Fernandez Alonso, Jose Luis

2009-01-01

As second and last contribution to the synoptic treatment of the Spiranthoideae for Colombia, the synopsis of the tribes Spirantheae (subtribes Cyclopogoninae: 3 genera, 41 species and Stenorrhynchidinae: 9 genera, 15 species) and Cranichideae (5 genera, 53 species), is presented. The most diverse genera in these tribes are: Cranichis (20 species), Cyclopogon (17), Ponthieva (15) and Pelexia (14). As part of the results of this study: a)- The transfer of Cybebus from the subtribe Spiranthinae (where it was commonly placed) to the subtribe Stenorhinchidinae, is proposed, based on the floral morphology (the rostellum and viscidium structure). b)- two genera are reported for Colombia as new records, each one with one species: Lyroglossa (L. grisebachii) and Helonoma; for the latter the new combination Helonoma peruviana (Szlach.) Salazar, Duenas and Fern. Alonso is proposed. c) New records in the previously known list of Colombian orchids are presented: Coccineorchis (C. cristata, C. navarrensis), Cyclopogon (C. maldonadoanus, C. olivaceus, C. rimbachii), Pelexia (P. hirta, P. palmorchidis), Ponthieva (P. venusta), and Sarcoglottis (S. grandiflora, S. maasorum, S. neglecta, S. stergiosii). d)- And additional 19 new records of species belonging to Aspidogyne and Microchilus, not reported in Duenas and Fernandez-Alonso (2007), are also included. e)- Finally an analysis of the distribution and diversity of the genera of this subfamily, according to altitude ranges in Colombia is presented. This group has predominant Andean distribution, being found mainly between 1300 and 3600 m of altitude. Genera broadly distributed as Microchilus, Gomphichis, Cyclopogon, Pelexia, Sarcoglottis, Coccineorchis, Stenorrhynchos, Cranichis and Ponthieva, are found almost from the level up to 3000 m, in all the regions of the country. In contrast, Beloglottis, Brachystele, Cybebus, Eltroplectris, Hapalorchis, Helonoma, Lankesterella, Lyroglossa, Kreodanthus, Pteroglossa and Sauroglossum

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing.

Science.gov (United States)

Li, Ou; Xiao, Rong; Sun, Lihua; Guan, Chenglin; Kong, Dedong; Hu, Xiufang

2017-01-01

As an epiphyte orchid, Dendrobium catenatum relies on microorganisms for requisite nutrients. Metagenome pyrosequencing based on 16S rRNA and nifH genes was used to characterize the bacterial and diazotrophic communities associated with D. catenatum collected from 5 districts in China. Based on Meta-16S rRNA sequencing, 22 bacterial phyla and 699 genera were identified, distributed as 125 genera from 8 phyla and 319 genera from 10 phyla shared by all the planting bases and all the tissues, respectively. The predominant Proteobacteria varied from 71.81% (GZ) to 96.08% (YN), and Delftia (10.39-38.42%), Burkholderia (2.71-15.98%), Escherichia/Shigella (4.90-25.12%), Pseudomonas (2.68-30.72%) and Sphingomonas (1.83-2.05%) dominated in four planting bases. Pseudomonas (17.94-22.06%), Escherichia/Shigella (6.59-11.59%), Delftia (9.65-22.14%) and Burkholderia (3.12-11.05%) dominated in all the tissues. According to Meta-nifH sequencing, 4 phyla and 45 genera were identified, while 17 genera and 24 genera from 4 phyla were shared by all the planting bases and all the tissues, respectively. Burkholderia and Bradyrhizobium were the most popular in the planting bases, followed by Methylovirgula and Mesorhizobium. Mesorhizobium was the most popular in different tissues, followed by Beijerinckia, Xanthobacter, and Burkholderia. Among the genera, 39 were completely overlapped with the results based on the 16S rRNA gene. In conclusion, abundant bacteria and diazotrophs were identified in common in different tissues of D. catenatum from five planting bases, which might play a great role in the supply of nutrients such as nitrogen. The exact abundance of phylum and genus on the different tissues from different planting bases need deeper sequencing with more samples.

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing.

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Ou Li

Full Text Available As an epiphyte orchid, Dendrobium catenatum relies on microorganisms for requisite nutrients. Metagenome pyrosequencing based on 16S rRNA and nifH genes was used to characterize the bacterial and diazotrophic communities associated with D. catenatum collected from 5 districts in China. Based on Meta-16S rRNA sequencing, 22 bacterial phyla and 699 genera were identified, distributed as 125 genera from 8 phyla and 319 genera from 10 phyla shared by all the planting bases and all the tissues, respectively. The predominant Proteobacteria varied from 71.81% (GZ to 96.08% (YN, and Delftia (10.39-38.42%, Burkholderia (2.71-15.98%, Escherichia/Shigella (4.90-25.12%, Pseudomonas (2.68-30.72% and Sphingomonas (1.83-2.05% dominated in four planting bases. Pseudomonas (17.94-22.06%, Escherichia/Shigella (6.59-11.59%, Delftia (9.65-22.14% and Burkholderia (3.12-11.05% dominated in all the tissues. According to Meta-nifH sequencing, 4 phyla and 45 genera were identified, while 17 genera and 24 genera from 4 phyla were shared by all the planting bases and all the tissues, respectively. Burkholderia and Bradyrhizobium were the most popular in the planting bases, followed by Methylovirgula and Mesorhizobium. Mesorhizobium was the most popular in different tissues, followed by Beijerinckia, Xanthobacter, and Burkholderia. Among the genera, 39 were completely overlapped with the results based on the 16S rRNA gene. In conclusion, abundant bacteria and diazotrophs were identified in common in different tissues of D. catenatum from five planting bases, which might play a great role in the supply of nutrients such as nitrogen. The exact abundance of phylum and genus on the different tissues from different planting bases need deeper sequencing with more samples.

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing

Science.gov (United States)

Li, Ou; Sun, Lihua; Guan, Chenglin; Kong, Dedong

2017-01-01

As an epiphyte orchid, Dendrobium catenatum relies on microorganisms for requisite nutrients. Metagenome pyrosequencing based on 16S rRNA and nifH genes was used to characterize the bacterial and diazotrophic communities associated with D. catenatum collected from 5 districts in China. Based on Meta-16S rRNA sequencing, 22 bacterial phyla and 699 genera were identified, distributed as 125 genera from 8 phyla and 319 genera from 10 phyla shared by all the planting bases and all the tissues, respectively. The predominant Proteobacteria varied from 71.81% (GZ) to 96.08% (YN), and Delftia (10.39–38.42%), Burkholderia (2.71–15.98%), Escherichia/Shigella (4.90–25.12%), Pseudomonas (2.68–30.72%) and Sphingomonas (1.83–2.05%) dominated in four planting bases. Pseudomonas (17.94–22.06%), Escherichia/Shigella (6.59–11.59%), Delftia (9.65–22.14%) and Burkholderia (3.12–11.05%) dominated in all the tissues. According to Meta-nifH sequencing, 4 phyla and 45 genera were identified, while 17 genera and 24 genera from 4 phyla were shared by all the planting bases and all the tissues, respectively. Burkholderia and Bradyrhizobium were the most popular in the planting bases, followed by Methylovirgula and Mesorhizobium. Mesorhizobium was the most popular in different tissues, followed by Beijerinckia, Xanthobacter, and Burkholderia. Among the genera, 39 were completely overlapped with the results based on the 16S rRNA gene. In conclusion, abundant bacteria and diazotrophs were identified in common in different tissues of D. catenatum from five planting bases, which might play a great role in the supply of nutrients such as nitrogen. The exact abundance of phylum and genus on the different tissues from different planting bases need deeper sequencing with more samples. PMID:28931073

Check list of the Iberian and Balearic orchids. 2. Ophrys L. - Spiranthes Rich.

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Gamarra, Roberto

2003-12-01

Full Text Available A check list of the taxa of the family Orchidaceae found in the Iberian Peninsula and the Balearic Islands is presented in alphabetical order. This section includes the genera from Ophrys to Spiranthes, down to the rank of variety, but excluding hybrids. We have gathered together the correct names, with their corresponding place of publication, synonyms and indicatio locotypica. Also included are some observations in those genera and species that present nomenclatural and taxonomic problems. Lectotypes for Orchis broteroana Rivas Goday & Bellot. and O. mascula subsp. laxifloraeformis Rivas Goday & Bellot are designated hereSe presenta un catalogo, ordenado alfabéticamente, de los taxones de la familia Orchidaceae incluidos en los géneros Ophrys a Spiranthes, presentes en la Península Ibérica e Islas Baleares, excluidos híbridos. Se recogen todos los nombres, hasta el rango varietal, mencionados de dicho ambito geográfico, con su correspondiente lugar de publicación; por supuesto, los considerados correctos, sus sinonimos e indicatio locotypica. Se incluyen, cuando se estiman oportunas, observaciones de índole nomenclatural y taxonómico. Se designan los lectotipos de Orchis broteroana Rivas Goday & Bellot, y O. mascula subsp. laxifloraeformis Rivas Goday & Bellot.

Indo-Pacific coral species belonging to the subfamily Montastreinae Vaughan & Wells, 1943 (Scleractinea-Coelenterata) Part II. The genera Cyphastrea, Leptastrea, Echinopora and Diploastrea

NARCIS (Netherlands)

Wijsman-Best, M.

1980-01-01

INTRODUCTION In the first part of the study on the Montastreinae (Wijsman-Best, 1977) I have dealt with the genera Montrastrea and Plesiastrea on the basis of material from a wide range of localities in the Indo-Pacific ocean. In the present paper dealing with the remaining genera of the

Pollinator-independent orchid attracts biotic pollinators due the production of lipoidal substances.

Science.gov (United States)

Pansarin, E R; Bergamo, P J; Ferreira-Caliman, M J

2018-03-01

Flowering plants often depend on the attraction of biotic pollinators for sexual reproduction. Consequently, the emergence and maintenance of selected floral attributes related to pollinator attraction and rewarding are driven by pollinator pressure. In this paper we explore the effect of pollinators, rainfall, temperature and air humidity on the reproduction of a Brazilian terrestrial orchid, Cranichis candida based on data of phenology, flower resources, olfactory and visual attraction cues, pollinators and breeding system. The flowers of C. candida are strongly protandrous and pollinated by workers of the social native bee Tetragonisca angustula. The bees collect labellar lipoidal substances (wax scales), which are transported to the nest. The lipoidal substance is composed of sterols, hydrocarbons and terpenes. The last presumably protects the bees and their nests against pathogens and other arthropods. C. candida sets fruits through biotic self- and cross-pollination, and spontaneously due the action of raindrops on flowers. Our results indicate that in C. candida, although rain-mediated spontaneous self-pollination happens, fructification mediated by biotic pollinations also occurs, which may result in fruit set by cross-pollination. A mixed pollination system must result in higher genetic variability when compared to species whose fruits are produced entirely by self-pollination. On the other hand, autogamy is a form of reproductive assurance, and has commonly evolved where pollination services are rare or absent. © 2017 German Society for Plant Sciences and The Royal Botanical Society of the Netherlands.

Recolonization after habitat restoration leads to decreased genetic variation in populations of a terrestrial orchid.

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Vandepitte, K; Gristina, A S; De Hert, K; Meekers, T; Roldán-Ruiz, I; Honnay, O

2012-09-01

Colonization is crucial to habitat restoration projects that rely on the spontaneous regeneration of the original vegetation. However, as a previously declining plant species spreads again, the likelihood of founder effects increases through recurrent population founding and associated serial bottlenecks. We related Amplified Fragment Length Polymorphism markers genetic variation and fitness to colonization history for all extant populations of the outcrossing terrestrial orchid Dactylorhiza incarnata in an isolated coastal dune complex. Around 1970, D. incarnata suffered a severe bottleneck yet ultimately persisted and gradually spread throughout the spatially segregated dune slacks, aided by the restoration of an open vegetation. Genetic assignment demonstrated dispersal to vacant sites from few nearby extant populations and very limited inflow from outside the spatially isolated reserve. Results further indicated that recurrent founding from few local sources resulted in the loss of genetic diversity and promoted genetic divergence (F(ST) = 0.35) among populations, but did not influence population fitness. The few source populations initially available and the limited inflow of genes from outside the study reserve, as a consequence of habitat degradation and spatial isolation, may have magnified the genetic effects of recurrent population founding. © 2012 Blackwell Publishing Ltd.

Acclimatization of the endangered Mexican epiphytic orchid, Laelia speciosa (H.B.K. Schltr

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Martha Mireya Ortega-Loeza

2012-02-01

Full Text Available In vitro propagation could be an alternative for the conservation of the endemic and endangered Mexican epiphytic orchid Laelia speciosa (H.B.K. Schltr. The goal of this study was to develop a protocol that would enhance acclimatization of in vitro – derived L. speciosa plantlets – a critical stage in propagation and subsequent conservation. Observations of stomata opening during ex vitro acclimatization, and the time of in vitro culture (0, 5, 10, 15, 20, 25, 30 days in greenhouse conditions (pre-acclimatization, on the survival and development of seedlings during the ex vitro acclimatization were carried out. In addition, the effect of different levels of nutrients (100%, 75%, 50%, 25% and 0%-strength salts and sucrose (0, 10, 20, 30, 40 g l−1 in the Murashige and Skoog medium (MS on the same parameters were measured. Plantlets incubated 20 days in greenhouse conditions before ex vitro acclimatization also displayed the best growth with a survival rate of 97.5%, related with high stomata opening. Plantlets on MS containing 100%-strength salts (with 20 days of pre-acclimatization, 40 g l−1 sucrose had the highest rate (97.5–100% of survival and vigor when acclimatized. By improving micropropagation through acclimatization, the sustainable management of L. speciosa now more likely, benefitting the conservation of this endangered species.

New perspective of dendrobium crumenatum orchid for antimicrobial activity against selected pathogenic bacteria

International Nuclear Information System (INIS)

Sandrasagaran, U.M.; Murugaiyah, V.

2014-01-01

The present study was undertaken to investigate the potential anti-microbial activity from different parts of Dendrobium crumenatum (leaf, stem, root and pseudo-bulb) against 8 pathogenic bacteria. The antimicrobial activities were determined by using disc diffusion assay, microdilution test for determination of minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). The methanolic extracts of stem, root and pseudo-bulb displayed antimicrobial activity comparable to that of the standard antibiotics. Stem extract of D. crumenatum had the most potent antimicrobial activity against Staphylococcus aureus, Klebsiella pneumoniae and Enterobacter aerogenes with MIC values of 0.39, 0.195 and 0.195 mg/mL, respectively. Root and stem extracts were found to be active against Streptococcus pneumoniae, Shigella dysentriae and Saccharomyces cerevisiae with MIC values of 0.78 mg/ml compared to 0.00312 mg/mL, 0.025 mg/mL and 0.0125 mg/mL of standard antibiotics of amoxcillin, chloramphenicol and kanamycin. Stem and root extracts yield MBC values in the range of 0.78 mg/mL to 6.25 mg/mL against Staphylococcus aureus, Enterobacter aerogenes, Klebsiella pneumoniae and Saccharomyces cerevisiae. The present study showed that D. crumenatum exhibited potential antimicrobial activity which could be due to the presence of alkaloid and flavonoid compounds and this is a first report on South East Asia region's wild orchid. (author)

Two new genera of metalmark butterflies of North and Central America (Lepidoptera, Riodinidae

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Marysol Trujano-Ortega

2018-01-01

Full Text Available Two new genera of Riodinidae (Insecta: Lepidoptera are described, Neoapodemia Trujano-Ortega, gen. n. (Neoapodemia nais (W. H. Edwards, 1876, comb. n., N. chisosensis Freeman, 1964, comb. n. and Plesioarida Trujano-Ortega & García-Vázquez, gen. n. (Plesioarida palmerii palmerii (W. H. Edwards, 1870, comb. n., P. palmerii arizona (Austin, [1989], comb. n., P. palmerii australis (Austin, [1989], comb. n., P. hepburni hepburni (Godman & Salvin, 1886, comb. n., P. hepburni remota (Austin, 1991, comb. n., P. murphyi (Austin, [1989], comb. n., P. hypoglauca hypoglauca (Godman & Salvin, 1878, comb. n., P. hypoglauca wellingi (Ferris, 1985, comb. n., P. walkeri (Godman & Salvin, 1886, comb. n., P. selvatica (De la Maza & De la Maza, 2017, comb. n.. Neoapodemia Trujano-Ortega, gen. n. is distributed in the southwestern USA and northeastern Mexico, while Plesioarida Trujano-Ortega & García-Vázquez, gen. n. is present from the southern USA to Central America. Species of these genera were previously classified as Apodemia C. Felder & R. Felder but molecular and morphological evidence separate them as new taxa. Morphological diagnoses and descriptions are provided for both new genera, including the main distinctive characters from labial palpi, prothoracic legs, wing venation and genitalia, as well as life history traits. A molecular phylogeny of one mitochondrial gene (COI and two nuclear genes (EF-1a and wg are also presented of most species of Apodemia, Neoapodemia Trujano-Ortega, gen. n., Plesioarida Trujano-Ortega & García-Vázquez, gen. n., and sequences of specimens from all tribes of Riodinidae. We compare the characters of Apodemia, Neoapodemia Trujano-Ortega, gen. n. and Plesioarida Trujano-Ortega & García-Vázquez, gen. n. and discuss the differences that support the description of these new taxa. This is a contribution to the taxonomy of the Riodinidae of North America of which the generic diversity is greater than previously recognized.

Three new genera and three new species of Lasiopteridi (Diptera: Cecidomyiidae) on Rubiaceae from Guadeloupe, French West Indies, and a key to genera of Neotropical Lasiopteridi unplaced to tribe

OpenAIRE

Gagné, Raymond J.; Étienne, Jean

2015-01-01

Three new genera of Lasiopteridi (Diptera: Cecidomyiidae), Faramitella Gagné, new genus, Anapeza Gagné, new genus, and Pellacara Gagné, new genus, each with one new species, are described. The new species are from leaf galls on Rubiaceae collected in Guadeloupe, F.W.I.: Faramitella planicauda Gagné, new species, was reared from Faramea occidentalis (L.) A. Rich.; Anapeza tumida Gagné, new species, and Pellacara postica, new species, were both reared from Psychotria mapourioides DC. The three ...

Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera

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Schneeweiss, G.M.; Palomeque, T.; Colwell, A.E.; Weiss-Schneeweiss, H.

2004-01-01

Chromosome numbers and karyotypes of species of Orobanche, Cistanche, and Diphelypaea (Orobanchaceae) were investigated, and 108 chromosome counts of 53 taxa, 19 counted for the first time, are presented with a thorough compilation of previously published data. Additionally, karyotypes of representatives of these genera, including Orobanche sects. Orobanche and Trionychon, are reported. Cistanche (x = 20) has large meta- to submetacentric chromosomes, while those of Diphelypaea (x = 19) are medium-sized submeta-to acrocentrics. Within three analyzed sections of Orobanche, sects. Myzorrhiza (x = 24) and Trionychon (x = 12) possess medium-sized submeta- to acrocentrics, while sect. Orobanche (x = 19) has small, mostly meta- to submetacentric, chromosomes. Polyploidy is unevenly distributed in Orobanche and restricted to a few lineages, e.g., O. sect. Myzorrhiza or Orobanche gracilis and its relatives (sect. Orobanche). The distribution of basic chromosome numbers supports the groups found by molecular phylogenetic analyses: Cistanche has x = 20, the Orobanche-group (Orobanche sect. Orobanche, Diphelypaea) has x = 19, and the Phelipanche-group (Orobanche sects. Gymnocaulis, Myzorrhiza, Trionychon) has x = 12, 24. A model of chromosome number evolution in Orobanche and related genera is presented: from two ancestral base numbers, xh = 5 and xh = 6, independent polyploidizations led to x = 20 (Cistanche) and (after dysploidization) x = 19 (Orobanche-group) and to x = 12 and x = 24 (Phelipanche-group), respectively.

Digital Gene Expression Analysis Based on De Novo Transcriptome Assembly Reveals New Genes Associated with Floral Organ Differentiation of the Orchid Plant Cymbidium ensifolium.

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Fengxi Yang

Full Text Available Cymbidium ensifolium belongs to the genus Cymbidium of the orchid family. Owing to its spectacular flower morphology, C. ensifolium has considerable ecological and cultural value. However, limited genetic data is available for this non-model plant, and the molecular mechanism underlying floral organ identity is still poorly understood. In this study, we characterize the floral transcriptome of C. ensifolium and present, for the first time, extensive sequence and transcript abundance data of individual floral organs. After sequencing, over 10 Gb clean sequence data were generated and assembled into 111,892 unigenes with an average length of 932.03 base pairs, including 1,227 clusters and 110,665 singletons. Assembled sequences were annotated with gene descriptions, gene ontology, clusters of orthologous group terms, the Kyoto Encyclopedia of Genes and Genomes, and the plant transcription factor database. From these annotations, 131 flowering-associated unigenes, 61 CONSTANS-LIKE (COL unigenes and 90 floral homeotic genes were identified. In addition, four digital gene expression libraries were constructed for the sepal, petal, labellum and gynostemium, and 1,058 genes corresponding to individual floral organ development were identified. Among them, eight MADS-box genes were further investigated by full-length cDNA sequence analysis and expression validation, which revealed two APETALA1/AGL9-like MADS-box genes preferentially expressed in the sepal and petal, two AGAMOUS-like genes particularly restricted to the gynostemium, and four DEF-like genes distinctively expressed in different floral organs. The spatial expression of these genes varied distinctly in different floral mutant corresponding to different floral morphogenesis, which validated the specialized roles of them in floral patterning and further supported the effectiveness of our in silico analysis. This dataset generated in our study provides new insights into the molecular mechanisms

Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and 13C NMR data of diterpenes

International Nuclear Information System (INIS)

Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius

2012-01-01

The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from 13 C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

Three new South American mailed catfishes of the genera Rineloricaria and Loricariichthys (Pisces, Siluriformes, Loricariide)

NARCIS (Netherlands)

Isbrücker, I.J.H.; Nijssen, H.

1979-01-01

Three new species belonging to two different genera of South American mailed catfishes of the subfamily Loricariinae are described and figured. A discussion of and comparative notes on related species are added. Rineloricaria formosa n. sp. is described from the Río Inírida/Río Orinoco drainage in

18S rDNA phylogeny of lamproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa.

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Anna Maria Fiore-Donno

Full Text Available The phylogenetic position of the slime-mould genus Lamproderma (Myxomycetes, Amoebozoa challenges traditional taxonomy: although it displays the typical characters of the order Stemonitales, it appears to be sister to Physarales. This study provides a small subunit (18S or SSU ribosomal RNA gene-based phylogeny of Lamproderma and its allies, with new sequences from 49 specimens in 12 genera. We found that the order Stemonitales and Lamproderma were both ancestral to Physarales and that Lamproderma constitutes several clades intermingled with species of Diacheopsis, Colloderma and Elaeomyxa. We suggest that these genera may have evolved from Lamproderma by multiple losses of fruiting body stalks and that many taxonomic revisions are needed. We found such high genetic diversity within three Lamproderma species that they probably consist of clusters of sibling species. We discuss the contrasts between genetic and morphological divergence and implications for the morphospecies concept, highlighting the phylogenetically most reliable morphological characters and pointing to others that have been overestimated. In addition, we showed that the first part (~600 bases of the SSU rDNA gene is a valuable tool for phylogeny in Myxomycetes, since it displayed sufficient variability to distinguish closely related taxa and never failed to cluster together specimens considered of the same species.

Hepatozoon infection prevalence in four snake genera: influence of diet, prey parasitemia levels, or parasite type?

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Tomé, Beatriz; Maia, João P M C; Harris, D James

2012-10-01

Hepatozoon spp. (Apicomplexa: Haemogregarinidae) are the most commonly reported hemoparasites from snakes. Of over 300 Hepatozoon species identified, more than 120 were described from snakes. However, recent genetic assessments have found Hepatozoon lineages recovered from both prey and predators, indicating that diet may play an important role in the infection of final vertebrate hosts. Here 4 different snake genera with different diets were assessed. Hepatozoon spp. prevalence varied greatly between the genera, but only lineages already identified from potential prey, i.e., gecko and lacertid lizards, were recovered from the snakes. Interestingly, the Hepatozoon spp. lineage known from geckos was the most common in the snakes, but this does not reflect their diet. Higher parasitemia levels, reported for some geckos relative to lacertid lizards, may play a role. Alternatively, this lineage may be more effective at parasitizing snakes or may occur, despite being unrecorded, in other vertebrate groups consumed by snakes.

First Guatemalan record of natural hybridisation between Neotropical species of the Lady's Slipper orchid (Orchidaceae, Cypripedioideae).

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Szlachetko, Dariusz L; Kolanowska, Marta; Muller, Fred; Vannini, Jay; Rojek, Joanna; Górniak, Marcin

2017-01-01

The first natural hybrid in the section Irapeana of the orchid genus Cypripedium is described and illustrated based on Guatemalan material. A molecular evaluation of the discovery is provided. Specimens with intermediate flowers between C. irapeanum and C. dickinsonianum within ITS and Xdh sequences have the signal sequence of both these species. The analysis of plastid sequences indicated that the maternal line is C. irapeanum . Information about the ecology, embryology and conservation status of the novelty is given, together with a distribution map of its parental species, C. irapeanum and C. dickinsonianum . A discussion of the hybridization between Cypripedium species is presented. The potential hybrid zones between the representatives of Cypripedium section Irapeana which were estimated based on the results of ecological niche modeling analysis are located in the Maya Highlands ( C. dickinsonianum and C. irapeanum ) and the eastern part of Southern Sierra Madre ( C. molle and C. irapeanum ). Moreover, all three Cypripedium species could inhabit Cordillera Neovolcánica according to the obtained models; however, it should be noticed that this region is well-distanced from the edges of the known geographical range of C. molle .

The systematic wood anatomy of the Moraceae (Uriticales). V. Genera of the tribe Moreae without urticaceous stamens

NARCIS (Netherlands)

Welle, ter B.J.H.; Koek-Noorman, J.; Topper, S.M.C.

1983-01-01

The wood anatomy of the Moreae without urticaceous stamens is described in detail. Generic descriptions of the following genera are provided: Antiaropsis, Artocarpus, Bagassa, Batocarpus, Clarisia, Parartocarpus, Poulsenia, Prainea, Sorocea, Sparattosyce, and Treculia. Wood anatomical variation

The systematic wood anatomy of the Moraceae (Urticales) IV. Genera of the tribe Moreae with urticaceous stamens

NARCIS (Netherlands)

Welle, ter B.J.H.; Koek-Noorman, J.; Topper, S.M.C.

1983-01-01

The wood anatomy of the genera of the tribe Moreae with urticaceous stamens, viz. Broussonetia, Madura s.l. (including Cardiogyne, Chlorophora, and Cudrania), Malaisia, Milicia, Morus, Olmedia, Pachytrophe, Plecospermum, Sloetiopsis, Streblus s.l. (including Paratrophis, Phyllochlamys,

An olfactory shift is associated with male perfume differentiation and species divergence in orchid bees.

Science.gov (United States)

Eltz, Thomas; Zimmermann, Yvonne; Pfeiffer, Carolin; Pech, Jorge Ramirez; Twele, Robert; Francke, Wittko; Quezada-Euan, J Javier G; Lunau, Klaus

2008-12-09

Saltational changes may underlie the diversification of pheromone communication systems in insects, which are normally under stabilizing selection favoring high specificity in signals and signal perception. In orchid bees (Euglossini), the production of male signals depends on the sense of smell: males collect complex blends of volatiles (perfumes) from their environment, which are later emitted as pheromone analogs at mating sites. We analyzed the behavioral and antennal response to perfume components in two male morphotypes of Euglossa cf. viridissima from Mexico, which differ in the number of mandibular teeth. Tridentate males collected 2-hydroxy-6-nona-1,3-dienyl-benzaldehyde (HNDB) as the dominant component of their perfume. In bidentate males, blends were broadly similar but lacked HNDB. Population genetic analysis revealed that tri- and bidentate males belong to two reproductively isolated lineages. Electroantennogram tests (EAG and GC-EAD) showed substantially lower antennal responses to HNDB in bidentate versus tridentate males, revealing for the first time a mechanism by which closely related species acquire different chemical compounds from their habitat. The component-specific differences in perfume perception and collection in males of two sibling species are in agreement with a saltational, olfaction-driven mode of signal perfume evolution. However, the response of females to the diverged signals remains unknown.

A QUICK KEY TO THE SUBFAMILIES AND GENERA OF ANTS OF THE SAVANNAH RIVER SITE

Energy Technology Data Exchange (ETDEWEB)

Martin, D

2007-09-04

This taxonomic key was devised to support development of a Rapid Bioassessment Protocol using ants at the Savannah River Site. The emphasis is on 'rapid' and, because the available keys contained a very large number of genera not known to occur at the Savannah River Site, we found that the available keys were unwieldy. Because these keys contained many more genera than we would ever encounter and because this larger number of genera required more couplets in the key and often required examination of characters that are difficult to assess without higher magnifications (60X or higher), more time was required to process samples. In developing this set of keys I emphasized character states that are easier for nonspecialists to recognize. I recognize that the character sets used may lead to some errors but I believe that the error rate will be small and, for the purpose of rapid bioassessment, this error rate will be acceptable provided that overall sample sizes are adequate. Oliver and Beattie (1996a, 1996b) found that for rapid assessment of biodiversity the same results were found when identifications were done to morphospecies by people with minimal expertise as when the same data sets were identified by subject matter experts. Basset et al. (2004) concluded that it was not as important to correctly identify all species as it was to be sure that the study included as many functional groups as possible. If your study requires high levels of accuracy, it is highly recommended that, when you key out a specimen and have any doubts concerning the identification, you should refer to keys in Bolton (1994) or to the other keys used to develop this area specific taxonomic key.

Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and {sup 13}C NMR data of diterpenes

Energy Technology Data Exchange (ETDEWEB)

Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da [Universidade Federal da Paraiba (UFPB), Joao Pessoa, PB (Brazil). Dept. de Ciencias Farmaceuticas; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius, E-mail: mtscotti@ccae.ufpb.br [Universidade Federal da Paraiba (UFPB), Rio Tinto, PB (Brazil). Dept. de Engenharia e Meio Ambiente

2012-07-01

The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from {sup 13}C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

The treasure trove of yeast genera and species described by Johannes van der Walt (1925-2011).

Science.gov (United States)

Smith, Maudy Th; Groenewald, Marizeth

2012-12-01

Yeast taxonomy and systematics have in recent years been dealt with intensively primarily by a small group of individual researchers with particular expertise. Amongst these was Johannes P. van der Walt, who had a major role in shaping our current understanding of yeast biodiversity and taxonomy. Van der Walt based his taxonomic studies not only on available cultures, but also by going into the field to isolate yeasts from various substrates. This pioneering work led to the discovery of many new genera and species, which were deposited in the Centraalbureau voor Schimmelcultures (CBS) collections for future studies in taxonomy, genomics, and industrial uses. These treasures collected during more than 60 years provide an outstanding legacy to the yeast community and will continue to exist in his absence. This contribution provides a comprehensive overview of the current nomenclatural and taxonomic status of the yeast genera and species introduced by van der Walt during his career.

Two new genera and twelve new species of Graphidaceae from Puerto Rico: a case for higher endemism of lichenized fungi in islands of the Caribbean?

Science.gov (United States)

Joel A. Mercado-Diaz; Robert Lücking; Sittiporn Parnmen

2014-01-01

Two new genera and twelve new species of Graphidaceae are described from Puerto Rico. The two new genera, Borinquenotrema and Paratopeliopsis, are based on a combination of molecular sequence data and phenotype characters. Borinquenotrema, with the single new species B. soredicarpum, features rounded ascomata developing beneath and persistently covered with soralia and...

A revision of male ants of the Malagasy Amblyoponinae (Hymenoptera: Formicidae with resurrections of the genera Stigmatomma and Xymmer.

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Masashi Yoshimura

Full Text Available In a male-based revision of ants of the subfamily Amblyoponinae from the Southwest Indian Ocean islands (SWIO: Comoros, Madagascar, Mauritius, Mayotte, Reunion, and Seychelles, we explore and reconsider male morphological characters that distinguish genera within the group. Our investigation redefines Amblyopone Erichson sensu Brown (1960, here referred to as Amblyopone sensu lato, into three genera: Xymmer Santschi stat. rev.,Amblyopone sensu stricto, Stigmatomma Roger stat. rev. All species names under Amblyopone s. l. reassign into Xymmer and Amblyopone s. s., which are small, well-defined genera, and Stigmatomma, a large group with a generic delimitation that still needs further refinement. Based on a study of male mandible characters and our scenario for mandibular evolution of the worker caste within Amblyopone s. l, we conclude that Amblyopone s. s. nests outside of XMAS (Xymmer+Mystrium+Adetomyrma+Stigmatomma clade. The following names are transferred from Amblyopone s. l. to Xymmer as comb. rev.: muticus. The following names are transferred from Amblyopone s. l. to Stigmatomma as comb. rev.: amblyops, armigerum, bellii, bierigi, bruni, celata, chilense, denticulatum, elongatum, emeryi, feae, impressifrons, luzonicum, minuta, normandi, oregonense, pallipes, quadratum, reclinatum, rothneyi, santschii, saundersi, silvestrii, zwaluwenburgi; as comb. nov.: agostii, annae, besucheti, boltoni, caliginosum, cleae, crenatum, degeneratum, egregium, electrinum, eminia, exiguum, falcatum, ferrugineum, fulvidum, gaetulicum, gingivalis, glauerti, gnoma, gracile, groehni, heraldoi, lucidum, lurilabes, monrosi, mystriops, noonadan, octodentatum, ophthalmicum, orizabanum, papuanum, pertinax, pluto, punctulatum, rubiginoum, sakaii, smithi, trigonignathum, trilobum, wilsoni, zaojun, and testaceum. A male-based key to the genera of Malagasy amblyoponine ants, their diagnoses, and a discussion of the evolution of the morphological character of males in the

The life of phi: the development of phi thickenings in roots of the orchids of the genus Miltoniopsis.

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Idris, Nurul A; Collings, David A

2015-02-01

Phi thickenings, bands of secondary wall thickenings that reinforce the primary wall of root cortical cells in a wide range of species, are described for the first time in the epiphytic orchid Miltoniopsis. As with phi thickenings found in other plants, the phi thickenings in Miltoniopsis contain highly aligned cellulose running along the lengths of the thickenings, and are lignified but not suberized. Using a combination of histological and immunocytochemical techniques, thickening development can be categorized into three different stages. Microtubules align lengthwise along the thickening during early and intermediate stages of development, and callose is deposited within the thickening in a pattern similar to the microtubules. These developing thickenings also label with the fluorescently tagged lectin wheat germ agglutinin (WGA). These associations with microtubules and callose, and the WGA labeling, all disappear when the phi thickenings are mature. This pattern of callose and WGA deposition show changes in the thickened cell wall composition and may shed light on the function of phi thickenings in plant roots, a role for which has yet to be established.

Integration of molecular biology tools for identifying promoters and genes abundantly expressed in flowers of Oncidium Gower Ramsey

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Tung Shu-Yun

2011-04-01

Full Text Available Abstract Background Orchids comprise one of the largest families of flowering plants and generate commercially important flowers. However, model plants, such as Arabidopsis thaliana do not contain all plant genes, and agronomic and horticulturally important genera and species must be individually studied. Results Several molecular biology tools were used to isolate flower-specific gene promoters from Oncidium 'Gower Ramsey' (Onc. GR. A cDNA library of reproductive tissues was used to construct a microarray in order to compare gene expression in flowers and leaves. Five genes were highly expressed in flower tissues, and the subcellular locations of the corresponding proteins were identified using lip transient transformation with fluorescent protein-fusion constructs. BAC clones of the 5 genes, together with 7 previously published flower- and reproductive growth-specific genes in Onc. GR, were identified for cloning of their promoter regions. Interestingly, 3 of the 5 novel flower-abundant genes were putative trypsin inhibitor (TI genes (OnTI1, OnTI2 and OnTI3, which were tandemly duplicated in the same BAC clone. Their promoters were identified using transient GUS reporter gene transformation and stable A. thaliana transformation analyses. Conclusions By combining cDNA microarray, BAC library, and bombardment assay techniques, we successfully identified flower-directed orchid genes and promoters.

Development of a multiplex PCR assay for rapid and simultaneous detection of four genera of fish pathogenic bacteria.

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Zhang, D F; Zhang, Q Q; Li, A H

2014-11-01

Species of genus Aeromonas, Vibrio, Edwardsiella and Streptococcus are the most common fish pathogenic bacteria that cause economically devastating losses in aquaculture. A multiplex polymerase chain reaction (mPCR) was developed for the simultaneous detection and differentiation of the four genera of fish pathogenic bacteria. Through the use of genus-specific primers instead of species-specific ones, the current mPCR covered much more target bacterial species compared with previously reported species-specific mPCR methods. The specificity of the four putative genus-specific primers was validated experimentally while used exclusively (uniplex PCR) or combined (mPCR) against bacterial genomic DNA templates of the target bacteria and nontarget bacteria. The PCR amplicons for the following genera were obtained as expected: Aeromonas (875 bp), Vibrio (524 bp), Edwardsiella (302 bp) and Streptococcus (197 bp), and the fragments could be separated clearly on the agarose gel electrophoresis. The mPCR did not produce nonspecific amplification products when used to amplify 21 nontarget species of bacteria. The mPCR detection limits for each target bacterial genera were 50 colony-forming units (CFU) in pure culture and 100 CFU in fish tissue samples. In conclusion, the mPCR assay was proven to be a powerful alternative to the conventional culture-based method, given its rapid, specific, sensitive and reliable detection of target pathogens. The fish pathogenic bacteria of genus Aeromonas, Vibrio, Edwardsiella and Streptococcus frequently cause severe outbreaks of diseases in cultured fish, and the genus-specific multiplex PCR assay developed in this study can detect the bacteria of the four genera when present in the samples either alone or mixed. The mPCR assay is expected to identify the causative agents more efficiently than uniplex PCR or species-specific multiplex PCR for clinical diagnosis, resulting in the earlier implementation of control measures. This m

Palynological study of the genera Ruellia, Ecbolium, Asystasia, Blepharis and Dicliptera (Acanthaceae) of Yemen

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Al-Hakimi, S. Anisa; Maideen, Haja; Latiff, A.

2013-11-01

Pollen morphology of five genera of the family Acanthaceae, namely Ruellia, Blepharis, Asystasia, Ecbolium and Dicliptera (Acanthaceae) of Yemen has been examined using light and scanning electron microscope. Pollen descriptions were provided with two shapes distinguished, spheroidal and prolate. Most of the pollen grains were tricolporate amd psuedocolpi except those of Blepharis which are colpate. The surface is coarsely reticulate, in addition to the lumina that varies in size.

Palynological study of the genera Ruellia, Ecbolium, Asystasia, Blepharis and Dicliptera (Acanthaceae) of Yemen

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Al-Hakimi, S. Anisa [School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor, Malaysia and Biology Department, Faculty of Science, Taiz University, Taiz (Yemen); Maideen, Haja; Latiff, A. [School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor (Malaysia)

2013-11-27

Pollen morphology of five genera of the family Acanthaceae, namely Ruellia, Blepharis, Asystasia, Ecbolium and Dicliptera (Acanthaceae) of Yemen has been examined using light and scanning electron microscope. Pollen descriptions were provided with two shapes distinguished, spheroidal and prolate. Most of the pollen grains were tricolporate amd psuedocolpi except those of Blepharis which are colpate. The surface is coarsely reticulate, in addition to the lumina that varies in size.

Studies on bioaccumulation of 152Eu, 137Cs, 60Co by different algal genera

International Nuclear Information System (INIS)

Saha, A.K.; Chakraborty, N.; Pal, R.; Nayak, Dalia; Lahiri, Susanta

2006-01-01

In the present paper, the bioaccumulation of a mixture of potentially hazardous, long lived radionuclides 152 Eu, 137 Cs and 60 Co by five algal genera of three different family, viz.: Lyngbya and Phormidium from cyanophyceae; Phizoclonium and Chaetomorpha from chlorophyceae and Catenella from rhodophyceae have been studied. Because of the long half life and high solubility, these radionuclides are considered the most hazardous in the nuclear spent fuel

A guide to the larvae of the Nearctic Diamesinae (Diptera; Chironomidae), the genera Boreoheptagyia, Protanypus, Diamesa, and Pseudokiefferiella

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Doughman, J.S.

1983-01-01

The subfamily Diamesinae consists of the monogeneric tribes Boreoheptagnini and Parotanypini and the diverse tribe Diamesini with seven genera. These midges are prevalent in clean, cool arctic-alpine waters, but less abundant in the lowlands. Keys and descriptions herein to the known species of these nine genera may prove valuable in the biomonitoring of these cool aquatic habitats. The larvae of Protanypus saetheri Wiederholm is described for the first time. Identification is based upon the absence of other species in the collection area. Examination of a series of larval D. incallida Walker collected in Wyoming and a review of pertinent literature shows that there is considerable variation in the procerus and the labral armature. Because these characters are often used in keys, this variability can lead to misidentification of less recognizable species of Diamesa. (USGS)

First Guatemalan record of natural hybridisation between Neotropical species of the Lady’s Slipper orchid (Orchidaceae, Cypripedioideae

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Dariusz L. Szlachetko

2017-12-01

Full Text Available The first natural hybrid in the section Irapeana of the orchid genus Cypripedium is described and illustrated based on Guatemalan material. A molecular evaluation of the discovery is provided. Specimens with intermediate flowers between C. irapeanum and C. dickinsonianum within ITS and Xdh sequences have the signal sequence of both these species. The analysis of plastid sequences indicated that the maternal line is C. irapeanum. Information about the ecology, embryology and conservation status of the novelty is given, together with a distribution map of its parental species, C. irapeanum and C. dickinsonianum. A discussion of the hybridization between Cypripedium species is presented. The potential hybrid zones between the representatives of Cypripedium section Irapeana which were estimated based on the results of ecological niche modeling analysis are located in the Maya Highlands (C. dickinsonianum and C. irapeanum and the eastern part of Southern Sierra Madre (C. molle and C. irapeanum. Moreover, all three Cypripedium species could inhabit Cordillera Neovolcánica according to the obtained models; however, it should be noticed that this region is well-distanced from the edges of the known geographical range of C. molle.

First Guatemalan record of natural hybridisation between Neotropical species of the Lady’s Slipper orchid (Orchidaceae, Cypripedioideae)

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Szlachetko, Dariusz L.; Kolanowska, Marta; Muller, Fred; Vannini, Jay; Rojek, Joanna

2017-01-01

The first natural hybrid in the section Irapeana of the orchid genus Cypripedium is described and illustrated based on Guatemalan material. A molecular evaluation of the discovery is provided. Specimens with intermediate flowers between C. irapeanum and C. dickinsonianum within ITS and Xdh sequences have the signal sequence of both these species. The analysis of plastid sequences indicated that the maternal line is C. irapeanum. Information about the ecology, embryology and conservation status of the novelty is given, together with a distribution map of its parental species, C. irapeanum and C. dickinsonianum. A discussion of the hybridization between Cypripedium species is presented. The potential hybrid zones between the representatives of Cypripedium section Irapeana which were estimated based on the results of ecological niche modeling analysis are located in the Maya Highlands (C. dickinsonianum and C. irapeanum) and the eastern part of Southern Sierra Madre (C. molle and C. irapeanum). Moreover, all three Cypripedium species could inhabit Cordillera Neovolcánica according to the obtained models; however, it should be noticed that this region is well-distanced from the edges of the known geographical range of C. molle. PMID:29302391

Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast.

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Brito, Ângela; Ramos, Vitor; Mota, Rita; Lima, Steeve; Santos, Arlete; Vieira, Jorge; Vieira, Cristina P; Kaštovský, Jan; Vasconcelos, Vitor M; Tamagnini, Paula

2017-06-01

Aiming at increasing the knowledge on marine cyanobacteria from temperate regions, we previously isolated and characterized 60 strains from the Portuguese foreshore and evaluate their potential to produce secondary metabolites. About 15% of the obtained 16S rRNA gene sequences showed less than 97% similarity to sequences in the databases revealing novel biodiversity. Herein, seven of these strains were extensively characterized and their classification was re-evaluated. The present study led to the proposal of five new taxa, three genera (Geminobacterium, Lusitaniella, and Calenema) and two species (Hyella patelloides and Jaaginema litorale). Geminobacterium atlanticum LEGE 07459 is a chroococcalean that shares morphological characteristics with other unicellular cyanobacterial genera but has a distinct phylogenetic position and particular ultrastructural features. The description of the Pleurocapsales Hyella patelloides LEGE 07179 includes novel molecular data for members of this genus. The filamentous isolates of Lusitaniella coriacea - LEGE 07167, 07157 and 06111 - constitute a very distinct lineage, and seem to be ubiquitous on the Portuguese coast. Jaaginema litorale LEGE 07176 has distinct characteristics compared to their marine counterparts, and our analysis indicates that this genus is polyphyletic. The Synechococcales Calenema singularis possess wider trichomes than Leptolyngbya, and its phylogenetic position reinforces the establishment of this new genus. Copyright © 2017 Elsevier Inc. All rights reserved.

A three-parameter model for classifying anurans into four genera based on advertisement calls.

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Gingras, Bruno; Fitch, William Tecumseh

2013-01-01

The vocalizations of anurans are innate in structure and may therefore contain indicators of phylogenetic history. Thus, advertisement calls of species which are more closely related phylogenetically are predicted to be more similar than those of distant species. This hypothesis was evaluated by comparing several widely used machine-learning algorithms. Recordings of advertisement calls from 142 species belonging to four genera were analyzed. A logistic regression model, using mean values for dominant frequency, coefficient of variation of root-mean square energy, and spectral flux, correctly classified advertisement calls with regard to genus with an accuracy above 70%. Similar accuracy rates were obtained using these parameters with a support vector machine model, a K-nearest neighbor algorithm, and a multivariate Gaussian distribution classifier, whereas a Gaussian mixture model performed slightly worse. In contrast, models based on mel-frequency cepstral coefficients did not fare as well. Comparable accuracy levels were obtained on out-of-sample recordings from 52 of the 142 original species. The results suggest that a combination of low-level acoustic attributes is sufficient to discriminate efficiently between the vocalizations of these four genera, thus supporting the initial premise and validating the use of high-throughput algorithms on animal vocalizations to evaluate phylogenetic hypotheses.

Revision of the stiletto fly genera Acupalpa Kröber and Pipinnipons Winterton (Diptera, Therevidae, Agapophytinae using cybertaxonomic methods, with a key to Australasian genera

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Shaun Winterton

2011-05-01

Full Text Available Australian stiletto flies of the sister-genera Acupalpa Kröber, 1912 and Pipinnipons Winterton, 2001 (Diptera: Therevidae: Agapophytinae are revised. Twelve new species of Acupalpa are described, while Acupalpa imitans (White, 1915, comb. n. is transferred from Pipinnipons and Acupalpa albimanis (Kröber, 1914, comb. n. is transferred from Ectinorhynchus Macquart as a senior synonym of Acupalpa pollinosa Mann. The total number of species of Acupalpa is therefore increased to 19: A. albimanis (Kröber, comb. n., A. albitarsa Mann, A. boharti sp. n., A. divisa (Walker, A. dolichorhyncha sp. n., A. glossa sp. n., A. imitans (White, comb. n., A. irwini Winterton, A. melanophaeos sp. n., A. miaboolya sp. n., A. minuta sp. n., A. minutoides sp. n., A. notomelas sp. n., A. novayamarna sp. n., A. rostrata Kröber, A. semirufa Mann, A. westralica sp. n., A. yalgoo sp. n. and A. yanchep sp. n. Three new species of Pipinnipons are described, increasing the total number of species to five: P. chauncyvallis sp. n., P. fascipennis (Kröber, P. kampmeierae sp. n., P. kroeberi Winterton, and P. sphecoda sp. n. Pipinnipons and Acupalpa are rediagnosed in light of the new species presented herein and revised keys to species are included. A dichotomous key to genera of Australasian Therevidae is included. As an empirical example of cybertaxonomy, taxonomic descriptions were composed using a character matrix developed in Lucid Builder (in Structured Descriptive Data (SDD format to generate natural language descriptions supplemented by online specimen and image databases. Web resources are provided throughout the document including: a links to high resolution colour images of all species on Morphbank, b registration of authors, publications, taxon names and other nomenclatural acts in Zoobank, with assignment of Life Science Identifiers (LSIDs for each, c links to Genbank accession records for DNA sequences, and d assignment of LSIDs to specimen records with links

Morphology, ecology and phylogeny of cyanobacteria belonging to genera Nostoc and Desmonostoc in Lithuania

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Špakaitė, Ina

2014-01-01

The aim of the study was to investigate the morphology, ecology and phylogeny of cyanobacteria belonging to genera Nostoc and Desmonostoc in Lithuania. The detailed research of freshwater and terrestrial Nostoc and Desmonostoc species provided new data on taxonomy, biology and ecology of these cyanobacteria and the overall diversity of algae in Lithuania. 20 Nostoc species and two intraspecific taxa, and 18 taxa to the Nostoc genus level were identified. Twelve Nostoc species and intraspecifi...

The genera of Chrysomelinae (Coleoptera: Chrysomelidae in Costa Rica

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R. Wills Flowers

2004-03-01

Full Text Available Keys in Spanish and English are given for the genera of Chrysomelinae known from Costa Rica. For each genus, a list of species compiled from collections in the University of Costa Rica, the National Biodiversity Institute, and the entomological literature is presented. The genus Planagetes Chevrolat 1843 is recorded for the first time from Central America, and the genus Leptinotarsa Stål 1858 is synonymized with Stilodes Chevrolat 1843Se presenta claves en español y inglés para los géneros de Chrysomelinae conocidas de Costa Rica. Para cada género, se presenta una lista de especies compiladas de las colecciones de la Universidad de Costa Rica, el Instituto Nacional de Biodiversidad, y la literatura entomológica. El género Planagetes Chevrolat 1843 está registrado por primera vez de América Central, y el género Leptinotarsa Stål 1858 está sinonomizado con Stilodes Chevrolat 1843

Distribution and eco-coenotic patterns of the forest orchid Epipactis pontica in Slovakia

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Richard Hrivnák

2014-07-01

Full Text Available The present study is aimed at characterising the ecological niche of a typical forest orchid (Epipactis pontica in Slovakia. Vegetation-environmental data were collected across mountain ranges and  their foothills in the Western Carpathians in 2011. Numerical classification was performed to delimit the main forest vegetation types and a linear mixed effect model was applied to reveal differences between plots with versus without E. pontica. This endangered species of Slovak flora grows in thermophilous turkey oak forests (Quercion confertae-cerris, mesophilous broad-leaved mixed oak-hornbeam forests (Carpinion betuli, but most stands correspond to the acidic (Luzulo-Fagion sylvaticae and mesotrophic beech forests (Fagion sylvaticae. Principal component analysis supported the floristic separation of plant communities and showed some significant vegetation environmental relationships. E. pontica prefers forests with closed canopy (mean canopy openness: 8.5–15.1% occurring especially on slightly acidic (soil reaction: 4.48–5.65 and nutrient-poor soils (soil conductivity: 43.1–72.6 μS/cm. The proposed Ellenberg indicator values for light (4, temperature (5, continentality (4, moisture (5, soil reaction (6 and nutrients (5 follow species composition pattern of vascular plants in Slovak phytosociological relevés with E. pontica occurrence. They are also in accordance with its habitat conditions and ecological requirements in other parts of its range. The linear mixed effect model did not confirm any environmental peculiarity of plots with the presence of E. pontica at a microscale level and this result was consistent across the studied sites.

Distributional patterns and possible origins of the tribes and genera of Coelidiinae (Homoptera, Membracoidea, Cicadellidae

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Mervin W Nielson

2000-12-01

Full Text Available Leafhoppers are well known biological indicators of zoogeographical regions owing, in part, to their phytodependency, high host plant specificity and relatively low vagility. In this connection, we discuss distributional patterns and possible zoogeographical origins of nine constituent tribes and their genera of the pantropical subfamily Coelidiinae. Among 118 known genera, only eight currently occupy more than one zoogeographical region, indicating an extremely high endemic profile which supports the proposed centers of origin and relatively low rate of intercontinental dispersal. The pantropical tribe Coelidiini is suggested as the basal group of the subfamily which is believed to have arisen prior to continental drift (late Jurassic-early Cretaceous because there appears to be no other evidence at the present time to explain its near cosmopolitan distribution. Possible origins of three Old World tribes, Hikangiini (Ethiopian, Thagriini (Oriental and Thanini (Australian and four New World -(Neotropical tribes, Teruliini, Tinobregmini, Gabritini and Sandersellini are elucidated. The tribe Youngolidiini occupies the Neotropical and Ethiopian realms but its origin is problematical. There appears to be ample evidence that origin/dispersal patterns are related to the geological history of the areas occupied by its faunal members.

Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids

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Schluter, P.M.; Shanklin, J.; Xu, S.; Gagliardini, V.; Whittle, E.; Grossniklaus, U.; Schiestl, F. P.

2011-04-05

The orchids Ophrys sphegodes and O. exaltata are reproductively isolated from each other by the attraction of two different, highly specific pollinator species. For pollinator attraction, flowers chemically mimic the pollinators sex pheromones, the key components of which are alkenes with different double-bond positions. This study identifies genes likely involved in alkene biosynthesis, encoding stearoyl-acyl carrier protein (ACP) desaturase (SAD) homologs. The expression of two isoforms, SAD1 and SAD2, is flower-specific and broadly parallels alkene production during flower development. SAD2 shows a significant association with alkene production, and in vitro assays show that O. sphegodes SAD2 has activity both as an 18:0-ACP {Delta}{sup 9} and a 16:0-ACP {Delta}{sup 4} desaturase. Downstream metabolism of the SAD2 reaction products would give rise to alkenes with double-bonds at position 9 or position 12, matching double-bond positions observed in alkenes in the odor bouquet of O. sphegodes. SAD1 and SAD2 show evidence of purifying selection before, and positive or relaxed purifying selection after gene duplication. By contributing to the production of species-specific alkene bouquets, SAD2 is suggested to contribute to differential pollinator attraction and reproductive isolation among these species. Taken together, these data are consistent with the hypothesis that SAD2 is a florally expressed barrier gene of large phenotypic effect and, possibly, a genic target of pollinator-mediated selection.

A COMPARITIVE STUDY USING GEOMETRIC AND VERTICAL PROFILE FEATURES DERIVED FROM AIRBORNE LIDAR FOR CLASSIFYING TREE GENERA

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C. Ko

2012-07-01

Full Text Available We present a comparative study between two different approaches for tree genera classification using descriptors derived from tree geometry and those derived from the vertical profile analysis of LiDAR point data. The different methods provide two perspectives for processing LiDAR point clouds for tree genera identification. The geometric perspective analyzes individual tree crowns in relation to valuable information related to characteristics of clusters and line segments derived within crowns and overall tree shapes to highlight the spatial distribution of LiDAR points within the crown. Conversely, analyzing vertical profiles retrieves information about the point distributions with respect to height percentiles; this perspective emphasizes of the importance that point distributions at specific heights express, accommodating for the decreased point density with respect to depth of canopy penetration by LiDAR pulses. The targeted species include white birch, maple, oak, poplar, white pine and jack pine at a study site northeast of Sault Ste. Marie, Ontario, Canada.

Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions.

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Hu, Chao; Tian, Huaizhen; Li, Hongqing; Hu, Aiqun; Xing, Fuwu; Bhattacharjee, Avishek; Hsu, Tianchuan; Kumar, Pankaj; Chung, Shihwen

2016-01-01

A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1) Goodyera is not monophyletic; 2) Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3) sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection.

Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae Based on DNA Sequence Data from Nuclear and Plastid Regions.

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Chao Hu

Full Text Available A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae based on the nuclear ribosomal internal transcribed spacer (ITS region and two chloroplast loci (matK and trnL-F was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1 Goodyera is not monophyletic; 2 Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3 sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection.

Genetic diversity and host specificity varies across three genera of blood parasites in ducks of the Pacific Americas Flyway

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Reeves, Andrew B.; Smith, Matthew M.; Meixell, Brandt W.; Fleskes, Joseph P.; Ramey, Andrew M.

2015-01-01

Birds of the order Anseriformes, commonly referred to as waterfowl, are frequently infected by Haemosporidia of the genera Haemoproteus, Plasmodium, and Leucocytozoon via dipteran vectors. We analyzed nucleotide sequences of the Cytochrome b (Cytb) gene from parasites of these genera detected in six species of ducks from Alaska and California, USA to characterize the genetic diversity of Haemosporidia infecting waterfowl at two ends of the Pacific Americas Flyway. In addition, parasite Cytb sequences were compared to those available on a public database to investigate specificity of genetic lineages to hosts of the order Anseriformes. Haplotype and nucleotide diversity of Haemoproteus Cytb sequences was lower than was detected for Plasmodium and Leucocytozoon parasites. Although waterfowl are presumed to be infected by only a single species of Leucocytozoon, L. simondi, diversity indices were highest for haplotypes from this genus and sequences formed five distinct clades separated by genetic distances of 4.9%–7.6%, suggesting potential cryptic speciation. All Haemoproteus andLeucocytozoon haplotypes derived from waterfowl samples formed monophyletic clades in phylogenetic analyses and were unique to the order Anseriformes with few exceptions. In contrast, waterfowl-origin Plasmodium haplotypes were identical or closely related to lineages found in other avian orders. Our results suggest a more generalist strategy for Plasmodiumparasites infecting North American waterfowl as compared to those of the generaHaemoproteus and Leucocytozoon.

Semente de amendoeira (Terminalia catappa L. (Combretaceae como substrato para o cultivo de orquídeas epífitas = Tropical almond seeds (Terminalia catappa L. (Combretaceae as a substrate for epiphytic orchid cultivation

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Marcus Nascimento Santos

2010-04-01

Full Text Available O uso de semente de Terminalia catappa L. (Combretaceae como substrato para o cultivo de orquídeas das espécies Oncidium flexuosum Sims, Dendrobium nobile Lindl. e Brassavola tuberculata Hook. foi comparado ao do xaxim (Dicksonia sellowiana Hook. Esta espécie é muito usada para o cultivo de orquídeas, mas está ameaçada de extinção e com a sua exploração proibida por lei. Ao final de 12 meses de cultivo, foram avaliadas as seguintes variáveis: altura da parte aérea, diâmetro dos pseudobulbos, número de pseudobulbos e pH.Não houve interação significativa entre substratos e espécies para as variáveis avaliadas. As orquídeas desenvolvidas em substrato de T. catappa e em xaxim apresentaram alturas da parte aérea, diâmetro dos pseudobulbos e número de pseudobulbos equivalentes. O substrato de T. catappa apresentou baixa velocidade de decomposição, o que manteve a sua boa capacidade de aeração, desenvolvimento das raízes e valor de pH próximo ao encontrado para o xaxim. O uso de T. catappa apresentou-se viável como substituto ao xaxim para o cultivo das orquídeas avaliadas.The use of Terminalia catappa L. (Combretaceae seeds as a substrate for growing orchids of the species Oncidium flexuosum Sims, Dendrobium nobile Lindl. and Brassavola tuberculata Hook was compared to the tree fern fiber Dicksonia sellowiana Hook, largely used for that purpose. This species is endangered and its exploitation is prohibited by law. After twelve months, the following parameters were evaluated: aerial part height, pseudo bulb diameter, number of pseudo bulbs and pH of substrate. There was no significant interaction between substrates and species for the evaluated parameters. The orchids developed on T. catappa substrate and tree fern fiber showed similar aerial parts, diameter and number of pseudo bulbs. T. catappa substrate showed a low rate of decomposition, which maintained good aeration capacity, root development and pH values close to

An appraisal of the phylogenetic relationships of Hypoptopomatini cascudinhos with description of two new genera and three new species (Siluriformes: Loricariidae

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Maria Laura S. Delapieve

2017-12-01

Full Text Available ABSTRACT The discovery of three new taxa of Hypoptotopomatini with ambiguous generic assignment prompted a reanalysis of the phylogenetic relationships of the tribe. The analysis focused on a data matrix of 56 terminals and 107 morphological characters comprising the three new taxa, most species of Hypoptopoma and Otocinclus, and all other species of the tribe. The 162 maximally parsimonious trees of 382 steps, consistency index of 0.41, and retention index of 0.83 were then summarized in a strict consensus tree. The results confirm the monophyly of the Hypoptopomatini, recover four genera as monophyletic (Acestridium, Hypoptopoma, Niobichthys, and Otocinclus, revealed Hypoptopoma and Oxyropsis to be non-monophyletic; and revealed two new genera within Hypoptopomatini. Additionally, Otocinclus was found to be sister to a group with all remaining genera of the tribe; Acestridium and Niobichthys were found to be sister to each other and that clade sister to a group formed by ((Leptotocinclus + Hypoptopoma [part] + (Nannoxyropsis (Oxyropsis + Hypoptopoma [part]. Based on this framework, changes to the classification and the taxonomy of the Hypoptopomatini are suggested and the new taxa are described.

Transitions between self-compatibility and self-incompatibility and the evolution of reproductive isolation in the large and diverse tropical genus Dendrobium (Orchidaceae).

Science.gov (United States)

Pinheiro, Fabio; Cafasso, Donata; Cozzolino, Salvatore; Scopece, Giovanni

2015-09-01

The evolution of interspecific reproductive barriers is crucial to understanding species evolution. This study examines the contribution of transitions between self-compatibility (SC) and self-incompatibility (SI) and genetic divergence in the evolution of reproductive barriers in Dendrobium, one of the largest orchid genera. Specifically, it investigates the evolution of pre- and postzygotic isolation and the effects of transitions between compatibility states on interspecific reproductive isolation within the genus. The role of SC and SI changes in reproductive compatibility among species was examined using fruit set and seed viability data available in the literature from 86 species and ∼2500 hand pollinations. The evolution of SC and SI in Dendrobium species was investigated within a phylogenetic framework using internal transcribed spacer sequences available in GenBank. Based on data from crossing experiments, estimations of genetic distance and the results of a literature survey, it was found that changes in SC and SI significantly influenced the compatibility between species in interspecific crosses. The number of fruits produced was significantly higher in crosses in which self-incompatible species acted as pollen donor for self-compatible species, following the SI × SC rule. Maximum likelihood and Bayesian tests did not reject transitions from SI to SC and from SC to SI across the Dendrobium phylogeny. In addition, postzygotic isolation (embryo mortality) was found to evolve gradually with genetic divergence, in agreement with previous results observed for other plant species, including orchids. Transitions between SC and SI and the gradual accumulation of genetic incompatibilities affecting postzygotic isolation are important mechanisms preventing gene flow among Dendrobium species, and may constitute important evolutionary processes contributing to the high levels of species diversity in this tropical orchid group. © The Author 2015. Published by

A QUICK KEY TO THE SUBFAMILIES AND GENERA OF ANTS OF THE SAVANNAH RIVER SITE, AIKEN, SC

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Martin, D

2006-10-04

This taxonomic key was devised to support development of a Rapid Bioassessment Protocol using ants at the Savannah River Site. The emphasis is on ''rapid'' and, because the available keys contained a large number of genera not known to occur at the Savannah River Site, we found that the available keys were unwieldy. Because these keys contained more genera than we would likely encounter and because this larger number of genera required both more couplets in the key and often required examination of characters that are difficult to assess without higher magnifications (60X or higher) more time was required to process samples. In developing this set of keys I recognize that the character sets used may lead to some errors but I believe that the error rate will be small and, for the purpose of rapid bioassessment, this error rate will be acceptable provided that overall sample sizes are adequate. Oliver and Beattie (1996a, 1996b) found that for rapid assessment of biodiversity the same results were found when identifications were done to morphospecies by people with minimal expertise as when the same data sets were identified by subject matter experts. Basset et al. (2004) concluded that it was not as important to correctly identify all species as it was to be sure that the study included as many functional groups as possible. If your study requires high levels of accuracy, it is highly recommended that when you key out a specimen and have any doubts concerning the identification, you should refer to keys in Bolton (1994) or to the other keys used to develop this area specific taxonomic key.

Iranotrichia gen. n., a new genus of Scenopinidae (Diptera from Iran, with a key to window fly genera of the world

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Shaun Winterton

2011-10-01

Full Text Available An unusual new genus of Scenopinidae, Iranotrichia gen. n., comprising two newly discovered species (I. insolita sp. n. and I. nigra sp. n., is described from Iran. Iranotrichia gen. n. are scenopinine window flies with a habitus reminiscent of certain bee fly genera (Bombyliidae, based on colouration and elongate mouthparts and antennae. The phylogenetic placement of this distinctive new genus is discussed and a dichotomous key to world genera is presented. The genus name Kelseyana nom. n. is proposed to replace Caenoneura Kröber, 1924, which was found to be preoccupied by Thomson (1870: 270 (Hymenoptera and Kirby (1890: 136 (Odonata.

The eastern Asian and eastern and western North American floristic disjunction: congruent phylogenetic patterns in seven diverse genera.

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Xiang, Q Y; Soltis, D E; Soltis, P S

1998-10-01

One of the most remarkable examples of intercontinental disjunction of the North Temperate Flora involves eastern Asia and eastern and western North America. Although there has been considerable interest in this phytogeographic pattern for over 150 years (e.g., Gray, 1859; Li, 1952; Graham, 1972; Boufford and Spongberg, 1983; Wu, 1983; Tiffney, 1985a, 1985b), relationships among taxa displaying the disjunction remain obscure. Understanding phylogenetic relationships is, however, a prerequisite for historical biogeographic analyses of this distributional pattern. To understand better the relationships of taxa displaying this intercontinental disjunction, phylogenetic analyses were conducted using a variety of DNA data sets for species of four genera (Cornus, Boykinia, Tiarella, and Trautvetteria) that occur in eastern Asia, eastern North America, and western North America. An area cladogram was constructed for each of the four genera, all of which show a similar pattern of relationship: the eastern Asian species are sister to all North American species. An identical phylogenetic pattern is also found in three other taxa exhibiting this disjunction (Aralia sect. Aralia, Calycanthus, and Adiantum pedatum). The congruent phylogenetic pattern found in these seven diverse genera raises the possibility of a common origin of the eastern Asia, eastern and western North America disjunction. The data are in agreement with the long-standing hypothesis that this well-known floristic disjunction represents the fragmentation of a once continuous Mixed Mesophytic forest community and suggest that the disjunction may have involved only two major vicariance events: an initial split between Eurasia and North America, followed by the isolation of floras between eastern and western North America. However, congruence between phylogenies and geographic distributions does not necessarily indicate an identical phytogeographic history. Taxa exhibiting the same phylogenetic pattern may have

PHYLOGENETIC RELATIONSHIP OF THE RED TIDE DINOFLAGELLATE GYMNODINIUM BREVE TO OTHER MEMBERS OF THE GENERA GYMNODINIUM AND GYRODINIUM

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Phylogenetic relationships between the red-tide dinoflagellate Gymnodinium breve and other members of the genera Gymnodinium and Gyrodinium have not been studied at the molecular level. G. breve is most noted for its production of brevetoxin, which has been linked to extensive f...

Human exposure to airborne fungi from genera used as biocontrol agents in plant production.

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Madsen, Anne Mette; Hansen, Vinni Mona; Meyling, Nicolai Vitt; Eilenberg, Jørgen

2007-01-01

The fungi Trichoderma harzianum, T. polysporum, T. viride, Paeciliomyces fumosoroseus, P. lilacinus, Verticillium/lecanicillium lecanii, Ulocladium oudemansii, U. atrum and Beauveria bassiana are used or considered to be used for biocontrol of pests and plant diseases. Human exposure to these fungi in environments where they may naturally occur or are used as biocontrol agents has not been directly investigated to date. This review aims to provide an overview of the current knowledge of human exposure to fungi from the relevant genera. The subject of fungal taxonomy due to the rapid development of this issue is also discussed. B. bassiana, V. lecanii, T. harzianum, T. polysporum, P. lilacinus and U. oudemansii were infrequently present in the air and thus people in general seem to be seldom exposed to these fungi. However, when V. lecanii was present, high concentrations were measured. Fungi from the genera Trichoderma, Paecilomyces and Ulocladium were rarely identified to the species level and sometimes high concentrations were reported. T. viride and U. atrum were detected frequently in different environments and sometimes with a high frequency of presence in samples. Thus, people seem to be frequently exposed to these fungi. Sequence data have led to recent revisions of fungal taxonomy, and in future studies it is important to specify the taxonomy used for identification, thus making comparisons possible.

Colour-scent associations in a tropical orchid: three colours but two odours.

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Delle-Vedove, Roxane; Juillet, Nicolas; Bessière, Jean-Marie; Grison, Claude; Barthes, Nicolas; Pailler, Thierry; Dormont, Laurent; Schatz, Bertrand

2011-06-01

Colour and scent are the major pollinator attractants to flowers, and their production may be linked by shared biosynthetic pathways. Species with polymorphic floral traits are particularly relevant to study the joint evolution of floral traits. We used in this study the tropical orchid Calanthe sylvatica from Réunion Island. Three distinct colour varieties are observed, presenting lilac, white or purple flowers, and named respectively C. sylvaticavar.lilacina (hereafter referred as var. lilacina), C. sylvaticavar. alba (var. alba) and C. sylvatica var. purpurea (var. purpurea). We investigated the composition of the floral scent produced by these colour varieties using the non-invasive SPME technique in the wild. Scent emissions are dominated by aromatic compounds. Nevertheless, the presence of the terpenoid (E)-4,8-dimethylnona-1,3,7-triène (DMNT) is diagnostic of var. purpurea, with the volatile organic compounds (VOC) produced by some individuals containing up to 60% of DMNT. We evidence specific colour-scent associations in C. sylvatica, with two distinct scent profiles in the three colour varieties: the lilacina-like profile containing no or very little DMNT (2%). Calanthe sylvatica var. alba individuals group with one or the other scent profile independently of their population of origin. We suggest that white-flowered individuals have evolved at least twice, once from var. lilacina and at least once from var. purpurea after the colonisation of la Réunion. White-flowered individuals may have been favoured by the particular pollinator fauna characterising the island. These flowering varieties of C. sylvatica, which display three colours but two scents profiles prove that colour is not always a good indicator of odour and that colour-scent associations may be complex, depending on pollination ecology of the populations concerned. Copyright © 2011 Elsevier Ltd. All rights reserved.

Redefinition of Zehneria and four new related genera (Cucurbitaceae), with an enumeration of the Australasian and Pacific species

NARCIS (Netherlands)

Wilde, de W.J.J.O.; Duyfjes, B.E.E.

2006-01-01

The genus Zehneria Endl. is split into 5 genera, of which 4 are new: Indomelothria, Neoachmandra, Scopella, and Urceodiscus. Apart from several new combinations and taxa of subspecific rank, the following species are described as new: I. chlorocarpa, N. backeri, N. lancifolia, N. macrantha, N.

In vitro behaviour of Aspasia variegata, an epiphytic orchid from the Brazilian Cerrado

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Vespasiano Borges de Paiva Neto

2013-12-01

Full Text Available Aspasia variegata occurs naturally in the savanna of the Mato Grosso do Sul State, Brazil and it has been widely collected for its beautiful flowers. Additionally, its habitat has been greatly reduced and little or no investigation of its spread has been performed. Aiming to establish a protocol to obtain seedlings of the orchid A. variegata, different compositions of culture medium were tested to identify which one provided better in vitro growth and development and to assess the influence of these media in seedling acclimatisation. Thus, seeds obtained from mature capsules were inoculated in Knudson culture medium for 120 days until the protocorm stage. They were transferred to different culture media formulations, including MS and Knudson with half or full formulation, and 3.0 and 6.0g L-1 activated charcoal were added to them or not. After 180 days of protocorm inoculation, seedlings were evaluated for length of roots and shoots, number of roots and leaves, and chlorophyll contents. After that, seedlings were transferred to trays containing a mixture of Plantmax® and coconut fibre (1:1 for acclimatisation. Best results for the in vitro growth of A. variegata were obtained with the use of MS medium supplemented with 6.0g L-1 activated charcoal. Higher levels of chlorophyll were obtained, however, in treatments containing MS salts without activated charcoal presence, and lower levels in media containing Knudson salts with the presence of activated charcoal. The seedlings originated by higher chlorophyll levels during in vitro cultivation presented the highest survival rates and better development in the acclimatisation phase.

Distinguishing centrarchid genera by use of lateral line scales

Science.gov (United States)

Roberts, N.M.; Rabeni, C.F.; Stanovick, J.S.

2007-01-01

Predator-prey relations involving fishes are often evaluated using scales remaining in gut contents or feces. While several reliable keys help identify North American freshwater fish scales to the family level, none attempt to separate the family Centrarchidae to the genus level. Centrarchidae is of particular concern in the midwestern United States because it contains several popular sport fishes, such as smallmouth bass Micropterus dolomieu, largemouth bass M. salmoides, and rock bass Ambloplites rupestris, as well as less-sought-after species of sunfishes Lepomis spp. and crappies Pomoxis spp. Differentiating sport fish from non-sport fish has important management implications. Morphological characteristics of lateral line scales (n = 1,581) from known centrarchid fishes were analyzed. The variability of measurements within and between genera was examined to select variables that were the most useful in further classifying unknown centrarchid scales. A linear discriminant analysis model was developed using 10 variables. Based on this model, 84.4% of Ambloplites scales, 81.2% of Lepomis scales, and 86.6% of Micropterus scales were classified correctly using a jackknife procedure. ?? Copyright by the American Fisheries Society 2007.

Origin and diversification of hoverflies: a revision of the genera Asarkina and Allobaccha – A BIG4 Consortium PhD project

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Trevor Burt

2017-08-01

Full Text Available This BIG4 PhD project involves the overall taxonomic revision of the genera Allobaccha Curran and Asarkina Macquart (Diptera: Syrphidae. The revisions will be divided by biogeographic region (Afrotropical and Indomalayan and published accordingly. The publications will be collated as a thesis for submission to the University of Bonn (Rheinische Friedrich-Wilhelms-Universität Bonn, Germany doctoral program of biology. The goal of this project is to resolve alpha taxonomy and to infer the phylogenetic placement of these genera within the Syrphidae using Next-Generation Sequencing and Anchored Hybrid Enrichment techniques. The techniques undertaken in this project will be applied to future systematic problems in Diptera and testing future phylogenetic hypotheses.

Molecular phylogeny of the lionfish genera Dendrochirus and Pterois (Scorpaenidae, Pteroinae) based on mitochondrial DNA sequences.

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Kochzius, Marc; Söller, Rainer; Khalaf, Maroof A; Blohm, Dietmar

2003-09-01

This study investigates the molecular phylogeny of seven lionfishes of the genera Dendrochirus and Pterois. MP, ML, and NJ phylogenetic analysis based on 964 bp of partial mitochondrial DNA sequences (cytochrome b and 16S rDNA) revealed two main clades: (1) "Pterois" clade (Pterois miles and Pterois volitans), and (2) "Pteropterus-Dendrochirus" clade (remainder of the sampled species). The position of Dendrochirus brachypterus either basal to the main clades or in the "Pteropterus-Dendrochirus" clade cannot be resolved. However, the molecular phylogeny did not support the current separation of the genera Pterois and Dendrochirus. The siblings P. miles and P. volitans are clearly separated and our results support the proposed allopatric or parapatric distribution in the Indian and Pacific Ocean. However, the present analysis cannot reveal if P. miles and P. volitans are separate species or two populations of a single species, because the observed separation in different clades can be either explained by speciation or lineage sorting. Molecular clock estimates for the siblings P. miles and P. volitans suggest a divergence time of 2.4-8.3 mya, which coincide with geological events that created vicariance between populations of the Indian and Pacific Ocean.

Morphological and mitochondrial DNA data reshuffle the taxonomy of the genera em>Atopochetus> Attems, Litostrophus Chamberlin and em>Tonkinbolus> Verhoeff (Diplopoda: Spirobolida: Pachybolidae), with descriptions of nine new species

DEFF Research Database (Denmark)

Pimvichai, Piyatida; Enghoff, Henrik; Panha, Somsak

2018-01-01

Species-level taxonomy and phylogeny of two genera of South-East (SE) Asian pachybolid millipedes are analysed with a combination of morphological characters and DNA sequences (two mitochondrial gene fragments: COI and 16S rRNA). Strong support is found for the genera Litostrophus Chamberlin, 192...

IN VITRO GERMINATION AND ITS SUBSEQUENT GROWTH OF AN ORCHID OF Vanda tricolor Lindl. var. suavis FROM BALI ON COMPLEX ADDITIVES ENRICHED MEDIUM

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Rindang Dwiyani

2015-06-01

Full Text Available Vanda tricolor Lindl. var. suavis is an Indonesian wild orchid that has been rare in nature, so it needs attention to take care and conserve them. The objective of the research was to investigate the effect of coconut water and / or tomato juice on the growth of protocorm of V. tricolor Lindl. var suavis from Bali grown in vitro. The experiment was laid out in the factorial design, with two factors (coconut water/CW and tomato juice/TJ, each contained three concentration (CW: 0, 100, and 200 cc L-1; TJ: 0, 100 and 200 g L-1 resulted in nine combination of treatments and replicated four times. The results showed that tomato juice with concentration of 100 gL-1 or 200 gL-1 promotes growth of protocorms of Vanda tricolor Lindl. var. suavis from Bali regardless the presence of coconut water.

A transcriptome-wide, organ-specific regulatory map of Dendrobium officinale, an important traditional Chinese orchid herb

Science.gov (United States)

Meng, Yijun; Yu, Dongliang; Xue, Jie; Lu, Jiangjie; Feng, Shangguo; Shen, Chenjia; Wang, Huizhong

2016-01-01

Dendrobium officinale is an important traditional Chinese herb. Here, we did a transcriptome-wide, organ-specific study on this valuable plant by combining RNA, small RNA (sRNA) and degradome sequencing. RNA sequencing of four organs (flower, root, leaf and stem) of Dendrobium officinale enabled us to obtain 536,558 assembled transcripts, from which 2,645, 256, 42 and 54 were identified to be highly expressed in the four organs respectively. Based on sRNA sequencing, 2,038, 2, 21 and 24 sRNAs were identified to be specifically accumulated in the four organs respectively. A total of 1,047 mature microRNA (miRNA) candidates were detected. Based on secondary structure predictions and sequencing, tens of potential miRNA precursors were identified from the assembled transcripts. Interestingly, phase-distributed sRNAs with degradome-based processing evidences were discovered on the long-stem structures of two precursors. Target identification was performed for the 1,047 miRNA candidates, resulting in the discovery of 1,257 miRNA--target pairs. Finally, some biological meaningful subnetworks involving hormone signaling, development, secondary metabolism and Argonaute 1-related regulation were established. All of the sequencing data sets are available at NCBI Sequence Read Archive (http://www.ncbi.nlm.nih.gov/sra/). Summarily, our study provides a valuable resource for the in-depth molecular and functional studies on this important Chinese orchid herb. PMID:26732614

Review: hepatoprotective and microbiological studies of three genera: Equisetum, Lycopodium, and Gentiana

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Maria SUCIU

2012-11-01

Full Text Available Liver injury treatments are among the most important of today’s research domains, because with every passing year there is a more acute need for liver transplants. Many of the everyday drugs that people use, and all the toxic influences and unhealthy food lead to some form of liver disorder. That is why today’s attention is drawn to the potentials of a few miracle plants that have the ability to reduce or cure liver damage. Equisetum, Lycopodium and Gentiana genera species are well known homeopathic plants in the Northern Hemisphere. Their properties are used in many disorders, and in the recent studies they are tested for their microbiological and hepatic curative actions.

A re-evaluation of the final step of vanillin biosynthesis in the orchid Vanilla planifolia.

Science.gov (United States)

Yang, Hailian; Barros-Rios, Jaime; Kourteva, Galina; Rao, Xiaolan; Chen, Fang; Shen, Hui; Liu, Chenggang; Podstolski, Andrzej; Belanger, Faith; Havkin-Frenkel, Daphna; Dixon, Richard A

2017-07-01

A recent publication describes an enzyme from the vanilla orchid Vanilla planifolia with the ability to convert ferulic acid directly to vanillin. The authors propose that this represents the final step in the biosynthesis of vanillin, which is then converted to its storage form, glucovanillin, by glycosylation. The existence of such a "vanillin synthase" could enable biotechnological production of vanillin from ferulic acid using a "natural" vanilla enzyme. The proposed vanillin synthase exhibits high identity to cysteine proteases, and is identical at the protein sequence level to a protein identified in 2003 as being associated with the conversion of 4-coumaric acid to 4-hydroxybenzaldehyde. We here demonstrate that the recombinant cysteine protease-like protein, whether expressed in an in vitro transcription-translation system, E. coli, yeast, or plants, is unable to convert ferulic acid to vanillin. Rather, the protein is a component of an enzyme complex that preferentially converts 4-coumaric acid to 4-hydroxybenzaldehyde, as demonstrated by the purification of this complex and peptide sequencing. Furthermore, RNA sequencing provides evidence that this protein is expressed in many tissues of V. planifolia irrespective of whether or not they produce vanillin. On the basis of our results, V. planifolia does not appear to contain a cysteine protease-like "vanillin synthase" that can, by itself, directly convert ferulic acid to vanillin. The pathway to vanillin in V. planifolia is yet to be conclusively determined. Copyright © 2017 Elsevier Ltd. All rights reserved.

Body size, reproductive biology and abundance of the rare pseudoboini snakes genera Clelia and Boiruna (Serpentes, Colubridae in Brazil

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Lígia Pizzatto

2005-12-01

Full Text Available Pseudoboini snakes of the genera Clelia and Boiruna are apparently rare in nature and certainly rare in collections. This work presents data on body size, reproduction and abundance of five Brazilian species of these genera, in the largest collection of snakes in Latin America, the Instituto Butantan. Despite scarcity of data, follicular cycle seems to be continuous in most species, except Clelia rustica, which occurs in highlands. Females are largerthan males in all species, and fecundity is low when compared to other pseudoboini. Abundance is very low for all species even considering 100 years of collecting, and it is decreasing in recent decades when compared to other snakes (Bothrops jararaca, Oxyrhopus guibei, O. clathratus, Philodryas patagoniensis, Sibynomorphus mikanii, and Spilotes pullatus. The studied species present at least five traits of commonly threatened species and require more attention in researches and conservation policies.

A revision of the genera Salpa Forskål, 1775, Pegea Savigny, 1816, and Ritteriella Metcalf, 1919 (Tunicata, Thaliacea)

NARCIS (Netherlands)

Soest, van R.W.M.

1974-01-01

Based on material from all oceans the Salp genera Salpa, Pegea and Ritteriella are revised. Particularly the study of the number of muscle fibres has shown that Salpa maxima var. tuberculata, the subspecies Pegea confoederala bicaudata and the generally synonymized species Ritteriella retracta are

Polyphyly of the spring-parsleys (Cymopterus): molecular and morphological evidence suggests complex relationships among the perennial endemic genera of western North American Apiaceae

International Nuclear Information System (INIS)

Downie, S.R.; Hartman, R.L.; Sun, F.-J.; Katz-Downie, D.S.

2002-01-01

Cladistic analyses of DNA sequences from the nuclear rDNA internal transcribed spacer region and cpDNA rps16 intron and, for a subset of taxa, the cpDNA trnF-trnL-trnT locus were carried out to evaluate the monophyly of Cymopterus and to ascertain its phylogenetic placement among the other perennial genera of Apiaceae (Umbelliferae) subfamily Apioideae endemic to western North America. To elucidate patterns in the evolution of specific fruit characters and to evaluate their utility in circumscribing genera unambiguously, additional evidence was procured from cross-sections of mature fruits and the results of cladistic analysis of 25 morphological characters. Analyses of the partitioned data sets resulted in weakly supported and largely unresolved phylogenetic hypotheses, possibly due to the rapid radiation of the group, whereas the combined analysis of all molecular evidence resulted in a well-resolved phylogeny with higher bootstrap support. The traditionally used fruit characters of wing shape and composition and orientation of mericarp compression are highly variable. The results of these analyses reveal that Cymopterus and Lomatium, the two largest genera of western North American Apiaceae, are polyphyletic, and that their species are inextricably linked with those of other endemic perennial genera of the region (such as, Aletes, Musineon, Oreoxis, Pseudocymopterus, Pteryxia, and Tauschia), many of which are also not monophyletic. Prior emphasis on characters of the fruit in all systems of classification of the group has led to highly artificial assemblages of species. A complete reassessment of generic limits of all western endemic Apiaceae is required, as is further systematic study of this intractable group. (author)

CERN is awarded environmental label

CERN Multimedia

2009-01-01

Ophrys apifera, or bee orchid: the most widespread variety at our site. Anacamptis pyramidalis or pyramidal orchid: another common variety, with close to 2500 plants counted in 2005. This year, a Himantoglossum robertianum or giant orchid was spotted for the first time, an extremely rare specimen to find in our region. The monkey orchid, Orchis simia, gets its name from the bizarre shape of its labellum (this is actually the third petal, hanging down from the flower), which may remind you of a monkey. Himantoglossum hircinum, the lizard orchid, occurs periodically on the site. It has a rather strong odour, which is why in French it is called orchis bouc (goat orchid).

Massive production of butanediol during plant infection by phytopathogenic bacteria of the genera Dickeya and Pectobacterium.

Science.gov (United States)

Effantin, Géraldine; Rivasseau, Corinne; Gromova, Marina; Bligny, Richard; Hugouvieux-Cotte-Pattat, Nicole

2011-11-01

Plant pathogenic bacteria of the genera Dickeya and Pectobacterium are broad-host-range necrotrophs which cause soft-rot diseases in important crops. A metabolomic analysis, based on (13)C-NMR spectroscopy, was used to characterize the plant-bacteria interaction. Metabolic profiles revealed a decline in plant sugars and amino acids during infection and the concomitant appearance of a compound identified as 2,3-butanediol. Butanediol is the major metabolite found in macerated tissues of various host plants. It is accumulated during the symptomatic phase of the disease. Different species of Dickeya or Pectobacterium secrete high levels of butanediol during plant infection. Butanediol has been described as a signalling molecule involved in plant/bacterium interactions and, notably, able to induce plant systemic resistance. The bud genes, involved in butanediol production, are conserved in the phytopathogenic enterobacteria of the genera Dickeya, Pectobacterium, Erwinia, Pantoea and Brenneria. Inactivation of the bud genes of Dickeya dadantii revealed that the virulence of budA, budB and budR mutants was clearly reduced. The genes budA, budB and budC are highly expressed during plant infection. These data highlight the importance of butanediol metabolism in limiting acidification of the plant tissue during the development of the soft-rot disease caused by pectinolytic enterobacteria. © 2011 Blackwell Publishing Ltd.

Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago.

Science.gov (United States)

Garcia-Porta, Joan; Morales, Hernán E; Gómez-Díaz, Elena; Sindaco, Roberto; Carranza, Salvador

2016-05-01

In this study we used the complete fauna of geckos of the Socotra Archipelago to test whether the three gecko genera co-occurring in the islands (Pristurus, Hemidactylus and Haemodracon) produced similar outcomes of morphological and climatic diversification. To test this, we produced a time-calibrated tree of 346 geckos including all 16 endemic species of the archipelago and 26 potential close-relatives in the continent. Our dating estimates revealed that most of the diversity of geckos in the archipelago was the consequence of in situ diversification. However not all genera shared similar patterns of diversification. While in Hemidactylus and Haemodracon this involved great differences in body size and low levels of climatic diversification (mostly involving sympatric distributions), an opposite pattern appeared in Pristurus in which most of the diversification involved shifts in climatic envelopes (mostly involving allopatric and parapatric distributions) but almost no size differentiation. Consistently with this, Pristurus was the only genus in which rates of size diversification in islands were substantially lower than in the continent. This illustrates how different groups can greatly differ in their patterns of intra-island diversification and highlights the importance of taxon-dependent factors at determining different patterns of diversification in the same insular context. Copyright © 2016 Elsevier Inc. All rights reserved.

Spatial variation in pollinator-mediated selection on phenology, floral display and spur length in the orchid Gymnadenia conopsea.

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Chapurlat, Elodie; Ågren, Jon; Sletvold, Nina

2015-12-01

Spatial variation in plant-pollinator interactions may cause variation in pollinator-mediated selection on floral traits, but to establish this link conclusively experimental studies are needed. We quantified pollinator-mediated selection on flowering phenology and morphology in four populations of the fragrant orchid Gymnadenia conopsea, and compared selection mediated by diurnal and nocturnal pollinators in two of the populations. Variation in pollinator-mediated selection explained most of the among-population variation in the strength of directional and correlational selection. Pollinators mediated correlational selection on pairs of display traits, and on one display trait and spur length, a trait affecting pollination efficiency. Only nocturnal pollinators selected for longer spurs, and mediated stronger selection on the number of flowers compared with diurnal pollinators in one population. The two types of pollinators caused correlational selection on different pairs of traits and selected for different combinations of spur length and number of flowers. The results demonstrate that spatial variation in interactions with pollinators may result in differences in directional and correlational selection on floral traits in a plant with a semi-generalized pollination system, and suggest that differences in the relative importance of diurnal and nocturnal pollinators can cause variation in selection. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Structural plasticity of Barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs.

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Wang, Zhaohui; Kraft, Jelena J; Hui, Alice Y; Miller, W Allen

2010-06-20

The 3' untranslated regions (UTRs) of many plant viral RNAs contain cap-independent translation elements (3' CITEs). Among the 3' CITEs, the Barley yellow dwarf virus (BYDV)-like translation elements (BTEs) form a structurally variable and widely distributed group. Viruses in three genera were known to harbor 3' BTEs, defined by the presence of a 17-nt consensus sequence. To understand BTE function, knowledge of phylogenetically conserved structure is essential, yet the secondary structure has been determined only for the BYDV BTE. Here we show that Rose spring dwarf-associated luteovirus, and two viruses in a fourth genus, Umbravirus, contain functional BTEs, despite deviating in the 17nt consensus sequence. Structure probing by selective 2'-hydroxyl acylation and primer extension (SHAPE) revealed conserved and highly variable structures in BTEs in all four genera. We conclude that BTEs tolerate striking evolutionary plasticity in structure, while retaining the ability to stimulate cap-independent translation. Copyright (c) 2010 Elsevier Inc. All rights reserved.

Distinct chromatin environment associated with phosphorylated H3S10 histone during pollen mitosis I in orchids.

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Sharma, Santosh Kumar; Yamamoto, Maki; Mukai, Yasuhiko

2017-01-01

Pollen developmental pathway in plants involving synchronized transferal of cellular divisions from meiosis (microsporogenesis) to mitosis (pollen mitosis I/II) eventually offers a unique "meiosis-mitosis shift" at pollen mitosis I. Since the cell type (haploid microspore) and fate of pollen mitosis I differ from typical mitosis (in meristem cells), it is immensely important to analyze the chromosomal distribution of phosphorylated H3S10 histone during atypical pollen mitosis I to comprehend the role of histone phosphorylation in pollen development. We investigated the chromosomal phosphorylation of H3S10 histone during pollen mitosis I in orchids using immunostaining technique. The chromosomal distribution of H3S10ph during pollen mitosis I revealed differential pattern than that of typical mitosis in plants, however, eventually following the similar trends of mitosis in animals where H3S10 phosphorylation begins in the pericentromeric regions first, later extending to the whole chromosomes, and finally declining at anaphase/early cytokinesis (differentiation of vegetative and generative cells). The study suggests that the chromosomal distribution of H3S10ph during cell division is not universal and can be altered between different cell types encoded for diverse cellular processes. During pollen development, phosphorylation of histone might play a critical role in chromosome condensation events throughout pollen mitosis I in plants.

Maximizing the Diversity of Ensemble Random Forests for Tree Genera Classification Using High Density LiDAR Data

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Connie Ko

2016-08-01

Full Text Available Recent research into improving the effectiveness of forest inventory management using airborne LiDAR data has focused on developing advanced theories in data analytics. Furthermore, supervised learning as a predictive model for classifying tree genera (and species, where possible has been gaining popularity in order to minimize this labor-intensive task. However, bottlenecks remain that hinder the immediate adoption of supervised learning methods. With supervised classification, training samples are required for learning the parameters that govern the performance of a classifier, yet the selection of training data is often subjective and the quality of such samples is critically important. For LiDAR scanning in forest environments, the quantification of data quality is somewhat abstract, normally referring to some metric related to the completeness of individual tree crowns; however, this is not an issue that has received much attention in the literature. Intuitively the choice of training samples having varying quality will affect classification accuracy. In this paper a Diversity Index (DI is proposed that characterizes the diversity of data quality (Qi among selected training samples required for constructing a classification model of tree genera. The training sample is diversified in terms of data quality as opposed to the number of samples per class. The diversified training sample allows the classifier to better learn the positive and negative instances and; therefore; has a higher classification accuracy in discriminating the “unknown” class samples from the “known” samples. Our algorithm is implemented within the Random Forests base classifiers with six derived geometric features from LiDAR data. The training sample contains three tree genera (pine; poplar; and maple and the validation samples contains four labels (pine; poplar; maple; and “unknown”. Classification accuracy improved from 72.8%; when training samples were

Phylogeography of the endangered orchid Dendrobium moniliforme in East Asia inferred from chloroplast DNA sequences.

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Ye, Meirong; Liu, Wei; Xue, Qingyun; Hou, Beiwei; Luo, Jing; Ding, Xiaoyu

2017-11-01

The aim of the current study was to elucidate the phylogeographic history of Dendrobium moniliforme, an endangered orchid species, based on two chloroplast DNA (cpDNA) markers (trnC-petN and trnE-trnT). One hundred and thirty-five samples were collected from 18 natural populations of D. moniliforme covering the entire range of the Sino-Japanese Floristic Region (SJFR) of East Asia. A total of 35 distinct cpDNA haplotypes were identified in these populations, of which 23 haplotypes were each present in only one sample and thus restricted to a single population. The significantly larger N ST value (0.586) than G ST (0.328) (p < 0.05) demonstrated the presence of strong phylogeographic structure. Phylogenetic analyses indicated that all haplotypes were clustered into two lineages. The genetic diversity of D. moniliforme was high at the species level, reflected in its haplotype diversity (H d =0.8862), nucleotide diversity (P i =0.00361), total genetic diversity (H T =0.9011), and significant differentiation (Φ ST =0.5482). Based on mismatch distribution analysis and neutrality tests, population expansion was evident in all sampled populations and also in all populations sampled in mainland China. Three refuge areas were identified, one each in southwestern China, central-southeastern China, and the CKJ (Taiwan, Japan and Korea) Islands. The results supported the hypothesis that glacial refugia were maintained on different spatial-temporal scales in the SJFR during the last glacial maximum or earlier cold periods, suggesting that Quaternary refugial isolation promoted allopatric speciation of D. moniliforme in East Asia.

Symbiotic effectiveness of rhizobial mutualists varies in interactions with native Australian legume genera.

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Peter H Thrall

Full Text Available BACKGROUND AND OBJECTIVES: Interactions between plants and beneficial soil organisms (e.g. rhizobial bacteria, mycorrhizal fungi are models for investigating the ecological impacts of such associations in plant communities, and the evolution and maintenance of variation in mutualisms (e.g. host specificity and the level of benefits provided. With relatively few exceptions, variation in symbiotic effectiveness across wild host species is largely unexplored. METHODS: We evaluated these associations using representatives of several legume genera which commonly co-occur in natural ecosystems in south-eastern Australia and an extensive set of rhizobial strains isolated from these hosts. These strains had been previously assigned to specific phylotypes on the basis of molecular analyses. In the first of two inoculation experiments, the growth responses of each host species was evaluated with rhizobial strains isolated from that species. The second experiment assessed performance across genera and the extent of host specificity using a subset of these strains. RESULTS: While host growth responses to their own (sympatric isolates varied considerably, rhizobial phylotype was a significant predictor of symbiotic performance, indicating that bacterial species designations on the basis of molecular markers have ecological importance. Hosts responded in qualitatively different ways to sympatric and allopatric strains of rhizobia, ranging from species with a clear preference for their own strains, to those that were broad generalists, through to species that grew significantly better with allopatric strains. CONCLUSION: Theory has focused on trade-offs between the provision of benefits and symbiont competitive ability that might explain the persistence of less beneficial strains. However, differences in performance among co-occurring host species could also drive such patterns. Our results thus highlight the likely importance of plant community structure in

Testing deep-sea biodiversity paradigms on abyssal nematode genera and Acantholaimus species

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Lins, Lidia; da Silva, Maria Cristina; Neres, Patrícia; Esteves, André Morgado; Vanreusel, Ann

2018-02-01

Biodiversity patterns in the deep sea have been extensively studied in the last decades. In this study, we investigated whether reputable concepts in deep-sea ecology also explain diversity and distribution patterns of nematode genera and species in the abyss. Among them, three paradigms were tackled: (1) the deep sea is a highly diverse environment at a local scale, while on a regional and even larger geographical scale, species and genus turnover is limited; (2) the biodiversity of deep-sea nematode communities changes with the nature and amount of organic matter input from the surface; and (3) patch-mosaic dynamics of the deep-sea environment drive local diversity. To test these hypotheses, diversity and density of nematode assemblages and of species of the genus Acantholaimus were studied along two abyssal E-W transects. These two transects were situated in the Southern Ocean ( 50°S) and the North Atlantic ( 10°N). Four different hierarchical scales were used to compare biodiversity: at the scale of cores, between stations from the same region, and between regions. Results revealed that the deep sea harbours a high diversity at a local scale (alpha diversity), but that turnover can be shaped by different environmental drivers. Therefore, these results question the second part of the paradigm about limited species turnover in the deep sea. Higher surface primary productivity was correlated with greater nematode densities, whereas diversity responses to the augmentation of surface productivity showed no trend. Areas subjected to a constant and low food input revealed similar nematode communities to other oligotrophic abyssal areas, while stations under high productivity were characterized by different dominant genera and Acantholaimus species, and by a generally low local diversity. Our results corroborate the species-energy hypothesis, where productivity can set a limit to the richness of an ecosystem. Finally, we observed no correlation between sediment

Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences.

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Koopman, W J; Guetta, E; van de Wiel, C C; Vosman, B; van den Berg, R G

1998-11-01

Internal transcribed spacer (ITS-1) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.l.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Feráková than to other classifications evaluated, although the inclusion of sect. Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect. Cyanicae from Lactuca sensu Feráková is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca sativa). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool. L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect. Phaenixopus, and sect. Mulgedium, respectively. L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.

Lead (Pb) bioaccumulation; genera Bacillus isolate S1 and SS19 as a case study

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Arifiyanto, Achmad; Apriyanti, Fitria Dwi; Purwaningsih, Puput; Kalqutny, Septian Hary; Agustina, Dyah; Surtiningsih, Tini; Shovitri, Maya; Zulaika, Enny

2017-06-01

Lead (Pb) includes a group of large heavy metal in nature was toxic either on animal or human and did not provide an advantage function biologically. Bacillus isolates S1 and SS19 known resistant to lead up to 50 mg / L PbCl2. In this research will be examined whether genera Bacillus isolates S1 and SS19 could accumulate metal lead (Pb), their capability in accumulating and profile protein differences when the bacteria genera Bacillus isolates S1 and SS19 get exposed metal lead (Pb). Inoculum at age ± 9 hours are used, with a Nutrient Broth (NB) containing 50, 75 and 100 mg / L PbCl2. Inductively Coupled Plasma Atomic Emission Spectrometry (ICP) used to assessed Pb2+ concentrations. Bioaccumulation levels of Pb2+ by Bacillus isolate S1 and SS19 related to the distinction of beginning concentration to the final concentration. Bacillus isolate S1 achieved 53% and 51% bioaccumulation efficiency rate in lead presence concentration (75 and 100 mg/L) and 51% (50 mg/L). Another way Bacillus isolate SS19 was able to accumulate 57% (50 mg/L PbCl2) and kept stable on 36% bioaccumulation efficiency rate (75 and 100 mg/L PbCl2). Regarding SDS-PAGE electrophoresis protein profile result, protein in ± 127 kDa, molecule mass detected in the presence of Lead for Bacillus isolate S1.

Radiosensitivity of three species of ground orchids (Spathoglottis plicata, S. kimballiana var. angustifolia and S. tomentosa) to acute gamma radiation

International Nuclear Information System (INIS)

Gonzales, M.A.; Tapic, R.T.; Aurigue, F.B.

2008-01-01

A radiosensitivity study coupled with tissue culture technique was conducted as preliminary to mutation breeding of the three species of ground orchids (Spathoglottis plicata, S.kimballiana var. angustifolia, and S.tomentosa). It aimed to compare the effect of dose levels of gamma radiation applied to the germinated embryos (protocorms) of the three species. Also, it sought to determine the lethal dose and optimum dose of gamma radiation on the three species. The protocorms of the three species were irradiated at 10 Gy, 20 Gy, 30 Gy, 40 Gy, and 50 Gy dose level of gamma radiation. The three species have varied radiosensitivity as affected by their individual phenotype. Results showed that as the dose level and ministered increases, percent mortality of seedlings also increases whereas, the seedlings height, number of roots and root length decreased. However, there was an increase in the number of leaves at 10 and 20 Gy dose levels due to the emergence of furcations, but further increase in the dose levels of radiation decreased the number of leaves. Furthermore, some qualitative characters such as albinism, pigmentation, forked leaves, furcations, and multiple branching came out as responses to gamma irradiation

KEANEKARAGAMAN ANGGREK ALAM DAN KEBERADAAN MIKORIZA ANGGREK DI DUSUN TURGO PAKEM, SLEMAN YOGYAKARTA

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Lili Sugiyarto

2016-10-01

  This research aims to identify the diversity of orchids and to find the existence of mycorrrhizal symbiont in wild orchid roots in Turgo village, Pakem Sleman.                 The samples of orchids and orchid roots were done by taking samples in Puspa Forest of Turgo Village, Pakem Sleman Yogyakarta. This research were exploration research on existing orchids’ diversity. The methods that have been used to identify the existing orchid species in the forest, isolation, and characterization mycorrhizal fungi is PDA (potato dextrose agar. Measurement of environmental factors for including edhapic factors were humidity, pH, soil temperature, and microclimate factors were air temperature, air humidity, and light intensity. The mycorrhizal infection was done by observing of mycorrhizal fungi existence.            The results of the research are retrieved 8 species of orchids are Zeuxine petakinensis, Dendrobium sagittatum, Bulbophyllum chaetonium, Dendrobium mutabile, Eria retusa, Eria oblitterata, Pholidota carnea, Rhomboda velutina. Some orchids in the forest are dormant, therefore it couldn’t be identified. The mycorrhizal symbiosis from microscopic characterization had been known as different on each mychorriza. The mycorrhizal fungi that have been identified were genus of Rhizoctonia, Glomus, Chaetonium, Scopulariopsis and Trichoderma.   Keywords: orchid species, mychorrhiza, orchid fungi

Eucalyptus microfungi known from culture. 2. Alysidiella, Fusculina and Phlogicylindrium genera nova, with notes on some other poorly known taxa

NARCIS (Netherlands)

Summerell, B.A.; Groenewald, J.Z.; Carnegie, A.J.; Summerbell, R.C.; Crous, P.W.

2006-01-01

Although numerous microfungi have been described from Eucalyptus in recent years, this plant genus remains a rich substrate colonized by numerous undescribed species. In the present study several species and genera of ascomycetes were collected from symptomatic leaves or from leaf litter of this

Phytochemistry, biological activities and economical uses of the genus S t e r c u l i a and the related genera: A reveiw

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Moshera Mohamed El-Sherei

2016-06-01

Full Text Available The genus Sterculia is represented by 200 species which are widespread mainly in tropical and subtropical regions. Some of the Sterculia species are classified under different genera based on special morphological features. These are Pterygota Schott & Endl., Firmiana Marsili, Brachychiton Schott & Endl., Hildegardia Schott & Endl., Pterocymbium R.Br. and Scaphium Schott & Endl. The genus Sterculia and the related genera contain mainly flavonoids, whereas terpenoids, phenolic acids, phenylpropanoids, alkaloids, and other types of compounds including sugars, fatty acids, lignans and lignins are of less distribution. The biological activities such as antioxidant, anti-inflammatory, antimicrobial and cytotoxic activities have been reported for several species of the genus. On the other hand, there is confusion on the systematic position and classification of the genus Sterculia. However, the wide range of the reported flavonoids in the present review is quite significant and can act as a guide for further studies from the chemosystematic point of view. Also the value of the genus Sterculia and its related genera in the traditional medicine and their effective biological activities led to the possibilities of finding new sources of drugs for prospect applications.

Influência da qualidade de luz e silício no crescimento in vitro de orquídeas nativas e híbridas Light quality and silicon on growth in vitro of native and hybrid orchid species

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Moacir Pasqual

2011-09-01

Full Text Available Objetivou-se avaliar a influência do ambiente de cultivo e de concentrações de silicato de cálcio no crescimento in vitro de uma espécie nativa de orquídea (Brassavola perrine e de um híbrido [(Laelia cattleya Culminant "Tuilerie" x Laelia cattleya Sons Atout Rotunda x Brassolaelia cattleya Startifire Moon Beach]. Plântulas oriundas de sementes germinadas in vitro com aproximadamente 0,5 cm de comprimento foram inoculadas em frascos com capacidade para 250 mL contendo 60 mL de meio de cultura MS, acrescido de silicato de cálcio (0; 0,5; 1,0 e 2,0 mg L-1 em ambientes de cultivo [natural (casa de vegetação e artificial (em sala de crescimento], em todas as combinações possíveis. O meio de cultura teve seu pH ajustado para 5,8±0,1 e geleificado com 5,5 g L-1 de ágar antes do processo de autoclavagem a 121ºC e 1 atm por 20 minutos. Ao final de 150 dias foram realizadas avaliações biométricas e análises micromorfológicas (miscroscopia de varredura nas plântulas. Maior crescimento foi obtido com a utilização de 2,0 mg L-1 e 1,0 mg L-1 de silicato de cálcio para o híbrido e espécie nativa, respectivamente, em sala de crescimento. As orquídeas em estudo são espécies anfiestomáticas, com estômatos do tipo tetracítico (híbrida e anomocítico (nativa. A presença do silício na estrutura foliar proporcionou o correto desenvolvimento (ausência de deformações estruturais de plântulas de orquídeas.The vegetative propagation techniques using tissue culture can be a valuable tool in the production of orchid seedlings. The objective of this study was to determine the concentration of calcium silicate and light quality that provides better growth in seedlings of native orchid (Brassavola perrine and hybrid [(Laelia cattleya Climax "Tuilerie" x Laelia cattleya Sons Atout Rotunda x Brassolaelia cattleya Startifire Moon Beach]. Seedlings from seeds germinated in vitro with approximately 0.5 cm long were inoculated in 250 m

Taxonomic notes on the afrotropical genera Hapalogenius Hagedorn, Hylesinopsis Eggers, and Rhopalopselion Hagedorn (Coleoptera, Curculionidae, Scolytinae

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Roger Beaver

2010-09-01

Full Text Available Taxonomic confusion among the afrotropical scolytine genera Hapalogenius Hagedorn, Hylesinopsis Eggers and Rhopalopselion Hagedorn, and their synonyms is discussed with especial reference to the catalogues of Wood and Bright (1992, and Alonso-Zarazaga and Lyal (2009. A key is given to separate the three genera recognised, and the species considered to be included in each genus are listed. Hylesinopsis is resurrected from synonymy with Hapalogenius, and shown not to be closely related to it. Chilodendron Schedl is considered to be a synonym of Hylesinopsis and not of Xylechinus Chapuis. The following new synonymy is proposed at specific level: Hapalogenius africanus (Eggers (= Hapalogenius lesnei Eggers, = Metahylesinus brincki Schedl; Hapalogenius fuscipennis (Chapuis (= Hapalogenius bimaculatus Eggers; Hapalogenius oblongus (Eggers (= Metahylesinus striatus Schedl; Hylesinopsis fasciata (Hagedorn (= Kissophagus punctatus Eggers; Phrixosoma niger Eggers (= Hapalogenius niger Schedl. The following species are returned to Hylesinopsis from Hapalogenius to which they were transferred by Alonso-Zarazaga and Lyal (2009: Hylesinopsis alluaudi (Lepesme, H. angolensis (Schedl, H. arabiae (Schedl, H. atra (Nunberg, H. confusa (Eggers, H. decellei (Nunberg, H. dubia Eggers, H. emarginata (Nunberg, H. fasciata (Hagedorn, H. ficus (Schedl, H. granulata (Lepesme, H. hirsuta (Schedl, H. joveri (Schedl, H. pauliani (Lepesme, H. punctata (Eggers, H. saudiarabiae (Schedl. The following new combination is given: Hylesinopsis leprosula (Browne from Cryphalus Erichson. New distributional records are given for some species.

Western Hemisphere Zuphiini: descriptions of Coarazuphium whiteheadi, new species, and Zuphioides, new genus, and classification of the genera (Coleoptera, Carabidae

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George Ball

2013-07-01

Full Text Available Based on small samples (exemplars analyzed with morphological methods, including detailed descriptions and illustrations, this study treats primarily the Zuphium genus-group in the Western Hemisphere, which comprises two precinctive genera: Coarazuphium Gnaspini, Vanin & Godoy, 1998 (type species Parazuphium tessai Godoy & Vanin, 1990 and Zuphioides gen. n. (type species Zuphium mexicanum Chaudoir, 1863. The genus Coarazuphium includes six troglobitic species from Brazilian caves, and one probably hypogaeic (troglophilic species from the mountains of Oaxaca, in Mexico (C. whiteheadi, sp. n., type locality, ridge top, in western Oaxaca, Mexico, at 2164 m, 35 km north of San Pedro Juchatengo, 16.462N, 97.010W. The epigaeic genus Zuphioides includes 23 species, with its geographical range extended from Neotropical temperate Argentina in southern South America, northward through the tropics to north temperate southeastern Canada, in the Nearctic Region. Keys are provided to the species of Coarazuphium and to the genera of Western Hemisphere Zuphiini.

Proposed update to the taxonomy of the genera Hepacivirus and Pegivirus within the Flaviviridae family

DEFF Research Database (Denmark)

Smith, Donald B.; Becher, Paul; Bukh, Jens

2016-01-01

Proposals are described for the assignment of recently reported viruses, infecting rodents, bats and other mammalian species, to new species within the Hepacivirus and Pegivirus genera (family Flaviviridae). Assignments into 14 Hepacivirus species (Hepacivirus A– N) and 11 Pegivirus species (Pegi...

A novel technique for determination of the fructose, glucose and sucrose distribution in nectar from orchids by HPLC-ELSD.

Science.gov (United States)

Lindqvist, Dan Nybro; Pedersen, Henrik Ærenlund; Rasmussen, Lars Holm

2018-04-01

The dominant components in floral nectar is fructose, glucose and sucrose. The concentration and the ratio between the sugars are indicative for plant species and play an important part in the interplay between plants and pollinators. In this paper we present a novel HPLC-ELSD based analytical method for sugar characterization of nectar from orchids. Nectar was collected on Whatman No. 1 paper and preserved in the field by 70 v/v% ethanol. The analytical method had a linear range up to at least 3000 mg L -1 for all 3 sugars with a precision of 1.5-1.7%. Correlation coefficients were 0.9999 to 1.0000. The LOD of all sugars were 5-7 mg L -1 and the LOQ were 17-19 mg L -1 . Field samples were stable for min. 7 weeks at -18 °C. The technique was applied to two species of Platanthera (Orchidaceae) in order to test whether species-related differences in sugar composition could be observed. No differences were found between the two species, which were sucrose-dominant (53.5-100%) though with high variation within species and between individual flowers. Copyright © 2018 Elsevier B.V. All rights reserved.

Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain.

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Ahrens, Collin W; Supple, Megan A; Aitken, Nicola C; Cantrill, David J; Borevitz, Justin O; James, Elizabeth A

2017-06-01

Species are often used as the unit for conservation, but may not be suitable for species complexes where taxa are difficult to distinguish. Under such circumstances, it may be more appropriate to consider species groups or populations as evolutionarily significant units (ESUs). A population genomic approach was employed to investigate the diversity within and among closely related species to create a more robust, lineage-specific conservation strategy for a nationally endangered terrestrial orchid and its relatives from south-eastern Australia. Four putative species were sampled from a total of 16 populations in the Victorian Volcanic Plain (VVP) bioregion and one population of a sub-alpine outgroup in south-eastern Australia. Morphological measurements were taken in situ along with leaf material for genotyping by sequencing (GBS) and microsatellite analyses. Species could not be differentiated using morphological measurements. Microsatellite and GBS markers confirmed the outgroup as distinct, but only GBS markers provided resolution of population genetic structure. The nationally endangered Diuris basaltica was indistinguishable from two related species ( D. chryseopsis and D. behrii ), while the state-protected D. gregaria showed genomic differentiation. Genomic diversity identified among the four Diuris species suggests that conservation of this taxonomically complex group will be best served by considering them as one ESU rather than separately aligned with species as currently recognized. This approach will maximize evolutionary potential among all species during increased isolation and environmental change. The methods used here can be applied generally to conserve evolutionary processes for groups where taxonomic uncertainty hinders the use of species as conservation units. © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Adding Biotic Interactions into Paleodistribution Models: A Host-Cleptoparasite Complex of Neotropical Orchid Bees.

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Daniel Paiva Silva

Full Text Available Orchid bees compose an exclusive Neotropical pollinators group, with bright body coloration. Several of those species build their own nests, while others are reported as nest cleptoparasites. Here, the objective was to evaluate whether the inclusion of a strong biotic interaction, such as the presence of a host species, improved the ability of species distribution models (SDMs to predict the geographic range of the cleptoparasite species. The target species were Aglae caerulea and its host species Eulaema nigrita. Additionally, since A. caerulea is more frequently found in the Amazon rather than the Cerrado areas, a secondary objective was to evaluate whether this species is increasing or decreasing its distribution given South American past and current climatic conditions. SDMs methods (Maxent and Bioclim, in addition with current and past South American climatic conditions, as well as the occurrences for A. caerulea and E. nigrita were used to generate the distribution models. The distribution of A. caerulea was generated with and without the inclusion of the distribution of E. nigrita as a predictor variable. The results indicate A. caerulea was barely affected by past climatic conditions and the populations from the Cerrado savanna could be at least 21,000 years old (the last glacial maximum, as well as the Amazonian ones. On the other hand, in this study, the inclusion of the host-cleptoparasite interaction complex did not statistically improve the quality of the produced models, which means that the geographic range of this cleptoparasite species is mainly constrained by climate and not by the presence of the host species. Nonetheless, this could also be caused by unknown complexes of other Euglossini hosts with A. caerulea, which still are still needed to be described by science.

PENGELOLAAN PENANGKARAN DAN KUALITAS SUARA CUCAK RAWA (Pycnonotus zeylanicus Gmelin, 1789 DI MEGA BIRD AND ORCHID FARM, BOGOR

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Dini Ayu Lestari

2016-01-01

Full Text Available The background of this research is population of straw headed bulbul (Pcynonotus zeylanicus in the nature has decreased sharply.The effort should be done is ex-situ conservation by means of captive breeding of straw headed bulbul. The aim of the research was to identify captivation technique, success indicator, song training techniques and distribution sound quality of straw headed bulbul. This research was conducted in Mega Bird and Orchid Farm, Bogor from March to April 2014. Descriptive and quantitative data analysis was applied in this research. The results showed that straw headed bulbul has three types of cage, they are cage for growing periode, ge of reproduction, and cage of incubator. Foods given to the bird were banana, papaya, voer and cricket. The types of diseases recorded were diarrhea, white-colored feces, green-colored feces, flu, and paralyzed feet. The criteria and success rate in captivating were consist of medium-scaled egg hatching rate (68.69%, high breed rate (77.38%, and low mortality(10.34%. Distribution song quality of straw headed bulbul was varies. Based on the results of the study, it can be concluded that breeding management for success breeding of straw headed bulbul comprised of such aspects as cage system management, feed management, health and care management, result utilization management,  and song quality management. Keywords: captive breeding, management, straw headed bulbul

Three new genera and three new species of Nearctic Lasiopteridi (Diptera: Cecidomyiidae: Cecidomyiinae) from Asteraceae and Caprifoliaceae, and the tribe Rhopalomyiini subsumed under Oligotrophini.

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Gagné, Raymond J

2016-08-30

Three new Nearctic genera of gall midges (Diptera: Cecidomyiidae), each with a new species, are described: Helianthecis Gagné for Helianthecis capitum Gagné, new species, that lives in flower heads of Helianthus spp. (Asteraceae) from North Dakota to Texas; Lonicerae Gagné for Lonicerae russoi Gagné, new species, and Lonicerae lonicera (Felt), new combination, that form bud galls on Lonicera spp. (Caprifoliaceae) in California; and Chiosperma Gagné for Chiosperma turgidum Gagné, new species, that forms a bud gall on Symphoricarpos albus (L.) S.F. Blake (Caprifoliaceae) in Washington. The three new genera belong to the supertribe Lasiopteridi and are placed in the tribe Oligotrophini. The tribes Oligotrophini and Rhopalomyiini are combined.

Galkinius Perreault, 2014 or Darwiniella (Anderson, 1992? A new coral-associated barnacle sharing characteristics of these two genera in Pacific waters (Crustacea, Cirripedia, Thoracica, Pyrgomatidae

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Benny Kwok Kan Chan

2017-12-01

Full Text Available A new species of coral associated barnacle (Balanomorpha: Pyrgomatidae sharing morphological features of Darwiniella (Anderson, 1992 and Galkinius Perreault, 2014 is described. It has a fused shell and opercular plates, characteristic of Darwiniella. However, the morphology of the tergum and somatic body are closer to Galkinius. Sequence divergence of mitochondrial DNA 12S rDNA and COI reveals this new species clusters with the Galkinius clade. Therefore this new form is assigned to the genus Galkinius, as G. maculosus sp. n. Concomitantly the diagnosis of Galkinius is emended to include species with fused or four- plated shells and fused opercular plates. The new species is distinct from all Galkinius species in having a fused shell. It inhabits the corals Lobophyllia spp. and is distributed from the Dongsha Atoll in the South China Sea, Orchid Island of Taiwan in the Pacific Ocean, to Madang in Papua New Guinea waters.

Axenic Seed Culture and in vitro mass propagation of Malaysian Wild Orchid Cymbidium finlaysonianum LINDL

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Islam, T.; Bhattacharjee, B.; Islam, S. M. S.; Uddain, J.; Subramaniam, S.

2015-01-01

Under this study an efficient protocol on mass propagation of Cymbidium finlaysonianum an epiphytic Malaysian wild orchid has been established using axenic culture. To obtain an axenic seed culture, it is important to perform an adequate a disinfection procedure in tissue culture. Four nutrient media viz. MS, 0.5MS, KC and VW were evaluated on In vitro seed germination with callus initiation. The maximum seed germination with callus initiation (100 percentage) was recorded in MS basal medium with a short span of time (40 days after culture). After 45 days of callus initiation the effect of eight different treatments (T /sub 1/-T /sub 8/) on callus size and nature were also studied. The experiment revealed that in T /sub 3/ (MS + 2.0 mgl /sup -1/ BAP + 0.5 mg /sup -1/ NAA) was found to be the best for callus development (1.98 cm length and 1.01 cm breadth). The effect of different concentration of BAP was evaluated on protocorm formation and its proliferation. Maximum number (7.75) and percentage (81.40) of PLBs was recorded in MS medium supplemented with 1.5 mg-1 BAP. Very good PLBs development was recorded also in MS + BAP 1.0 mg-1 + NAA 0.5 mg /sup -1/. The highest elongation of shoot (3.80 cm) was observed in MS + 1.0 mg-1 BAP + 0.50 mg /sup -1/ NAA. For root induction 1.0 mg-1 NAA has proven to the best in 0.5 MS medium. The In developed seedlings were finally transferred to pots by successive phases of acclimatization. (author)

No Evidence of Habitat Loss Affecting the Orchid Bees Eulaema nigrita Lepeletier and Eufriesea auriceps Friese (Apidae: Euglossini) in the Brazilian Cerrado Savanna.

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Silva, D P; De Marco, P

2014-12-01

Habitat loss, landscape fragmentation, and agriculture intensification constitute the main threats to bees. As the organisms responsible for almost one third of the food produced worldwide, there are growing concerns on bees' response to human-related disturbances. Among all bee groups, orchid bees (Apidae: Euglossini) compose an interesting group to test landscape-related hypotheses. In here, we tested the effect of landscape features (amount of anthropic areas and isolation) on the probability of occurrence and the abundances of both Eulaema nigrita Lepeletier and Eufriesea auriceps Friese in the Cerrado savanna. In general, we did not observe any effect of landscape features on the probability of occurrence and abundances of both species in our sampling sites. Given their potential high dispersal abilities, these bee species may be less sensitive to fragmented landscapes or even positively affected by the increase of anthropic habitats. Since we sampled many E. nigrita specimens in highly preserved Cerrado savanna areas, we believe that at least for this biome, this species may not be a good indicator of landscape disturbance.

Contribution to the study of fungi in the genera Sparassis Fr. and Hericium Pers. in our forests

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Karadžić Dragan

2006-01-01

Fungi in the genera Sparassis and Hericium cause wood decay. In the forests of Serbia and Montenegro 4 species are identified in the genus Sparassis, and 3 species in the genus Hericium. These fungi develop on physiologically weakened trees, recently killed trees and branch litter (windthrows, broken trees, logs, thick branches). Especially great damage in the stands of Pinus species can be caused by the fungus Sparassis crispa. This fungus colonizes the living trees through the root and caus...

Habitat preference of Zoantharia genera depends on host sponge morphology

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Alberto Acosta

2010-08-01

Full Text Available Studies about sponge-zoanthid symbioses have been focused on understanding the specificity of the association, rather thantesting what are the characteristics that make the host suitable to be colonized. For the first time it is investigated whether the ZoanthariaParazoanthus and Epizoanthus preference is related to the host sponge morphology (shape and mechanical resistance. Materials andmethods. Sponges were categorized according to their shape and mechanical resistance. The presence/absence of zoanthids was recordedin 1,068 sponges at San Andres Island, and their habitat preference was evaluated using indices and confidence intervals. Results. 85Parazoanthus colonies (78% of the total associations and 24 Epizoanthus colonies (22% were associated to sponges (10.2% in total.Parazoanthus uses branched and compressible sponges although prefers encrusting and fragile sponges, while Epizoanthus showes theopposite pattern, it can inhabit encrusting and fragile sponges but prefers branched and compressible sponges. Conclusion. These resultsindicated that sponge morphology is an important trait in zoanthid habitat selection. On the other hand, the similarity in the habitat used byzoanthids suggests the possibility of inter-generic competition if common resources are limited in time and space, while the differentialhabitat preference allows the competitive coexistence of both genera.

Chemical releases of social behavior, II. source and specificity of the odor trail substances in four attine genera. (Hymenoptera: Formicidae)

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Murray S. Blum; John C. Moser; A.D. Cordero

1964-01-01

The higher members of the tribe Attini characteristically lay persistent and extensive odor trails especially in many neotropical areas. Thus, in Acromyrmex and Atta, long columns of foraging workers are frequently present on the odor trails but in the less specialized attine genera, workers may forage either in files or singly. Weber (1958...

Diversidade taxonômica e distribuição geográfica das Orchidaceae brasileiras Taxonomic diversity and geographic distribution of the Brazilian Orchidaceae

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Fábio de Barros

1990-07-01

Full Text Available Orchidaceae é uma das maiores famílias do Reino Vegetal, e sua distribuição geográfica obedece a limites definidos já a nivel de sub-famílias. O genero Laelia, com 7 seções das quais 5 ocorrentes no Brasil, apresenta características evolutivas interessantes, principalmente a sect. Parviflorae, que ocorre predominantemente em Minas Gerais e que representa um exemplo de "evolução explosiva" ainda em andamento. Os tratamentos taxonómicos dados a cada diferente grupo dentro da família não se apresentam uniformes, o que leva à aceitação de um grande número de gêneros pequenos em alguns grupos e de poucos gêneros grandes e complexos, em outros grupos.Orchidaceae is one of the largest plant families, and each of its subfamilies have a delimited distribution. The genus Laelia, with 7 subsections, 5 of which occuring in Brazil, shows interestingly evolutionary characteristics. Laelia sect. Parviflorae, which occurs mainly in Minas Gerais (Brazil is an example of "explosive evolution" still in process. The taxonomic treatment of the orchid family is not uniform from taxa to taxa which leads to many small genera in some groups and few large genera in some other groups.

KEANEKARAGAMAN ANGGREK EPIFIT DI KAWASAN TAMAN WISATA ALAM DANAU BUYAN-TAMBLINGAN

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I Gusti Ayu Agung Pradnya Paramitha

2013-04-01

Full Text Available Orchids are often found growing naturally in the tropical rain forest. Destruction of tropical rain forests can reduce the germplasms of natural orchids. One of the tropical rain forest areas which is often visited by tourists in Bali is Buyan-Tamblingan Nature Tourism Park. Research conducted from December 2011 until April 2012. The results showed that in the Buyan-Tamblingan Nature Tourism Park there are 30 species of epiphyte orchids. The epiphyte orchids which have the highest individual number is Appendicula elegans Rchb. f with total individual number was 198 individuals/ha. The Shannon-Wienner diversity index value of epiphyte orchid in Buyan-Tamblingan Nature Tourism Park is 1,1561.

iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae).

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Chen, Juan; Liu, Si Si; Kohler, Annegret; Yan, Bo; Luo, Hong Mei; Chen, Xiao Mei; Guo, Shun Xing

2017-06-02

Mycorrhizal fungi colonize orchid seeds and induce germination. This so-called symbiotic germination is a critical developmental process in the lifecycle of all orchid species. However, the molecular changes that occur during orchid seed symbiotic germination remain largely unknown. To better understand the molecular mechanism of orchid seed germination, we performed a comparative transcriptomic and proteomic analysis of the Chinese traditional medicinal orchid Dendrobium officinale to explore the change in protein expression at the different developmental stages during asymbiotic and symbiotic germination and identify the key proteins that regulate the symbiotic germination of orchid seeds. Among 2256 identified plant proteins, 308 were differentially expressed across three developmental stages during asymbiotic and symbiotic germination, and 229 were differentially expressed during symbiotic germination compared to asymbiotic development. Of these, 32 proteins were coup-regulated at both the proteomic and transcriptomic levels during symbiotic germination compared to asymbiotic germination. Our results suggest that symbiotic germination of D. officinale seeds shares a common signaling pathway with asymbiotic germination during the early germination stage. However, compared to asymbiotic germination, fungal colonization of orchid seeds appears to induce higher and earlier expression of some key proteins involved in lipid and carbohydrate metabolism and thus improves the efficiency of utilization of stored substances present in the embryo. This study provides new insight into the molecular basis of orchid seed germination.

Halocin C8: an antimicrobial peptide distributed among four halophilic archaeal genera: Natrinema, Haloterrigena, Haloferax, and Halobacterium.

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Besse, Alison; Vandervennet, Manon; Goulard, Christophe; Peduzzi, Jean; Isaac, Stéphanie; Rebuffat, Sylvie; Carré-Mlouka, Alyssa

2017-05-01

Halophilic archaea thrive in hypersaline ecosystems and produce antimicrobial peptides (AMPs) named halocins. AMPs are essential effectors of microbial interactions in natural ecosystems. Halocin C8 is a 7.4 kDa peptide produced by Natrinema sp. AS7092. Surrounded by genes involved in regulation and transport, the halC8 gene encodes a precursor, processed into the mature halocin and an immunity protein, protecting the producing strain against its halocin. This feature constitutes a unique property of halocin C8, as known AMPs and their immunity proteins are generally encoded on distinct ORFs in an operon. By complementary in silico and PCR-based approaches, the presence of halC8 in halophilic archaea collected from various parts of the world was evidenced. The full-length halC8 gene is restricted and consistently found in the genomes of strains belonging to the phylogenetically related genera Natrinema and Haloterrigena, along with transport and regulation genes. Functional expression of halC8 was demonstrated by RT-PCR and antimicrobial assays. Active halocin C8 was shown to contain five disulphide bridges, presumably conferring a compact structure resistant to harsh environmental conditions. In other archaeal genera, Haloferax and Halobacterium, genes encoding halocin C8 with diverging immunity protein moiety were evidenced. A phylogenetic analysis of halocin C8 sequences was conducted.

The cranial osteology and feeding ecology of the metriorhynchid crocodylomorph genera Dakosaurus and Plesiosuchus from the late Jurassic of Europe.

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Mark T Young

Full Text Available Dakosaurus and Plesiosuchus are characteristic genera of aquatic, large-bodied, macrophagous metriorhynchid crocodylomorphs. Recent studies show that these genera were apex predators in marine ecosystems during the latter part of the Late Jurassic, with robust skulls and strong bite forces optimized for feeding on large prey.Here we present comprehensive osteological descriptions and systematic revisions of the type species of both genera, and in doing so we resurrect the genus Plesiosuchus for the species Dakosaurus manselii. Both species are diagnosed with numerous autapomorphies. Dakosaurus maximus has premaxillary 'lateral plates'; strongly ornamented maxillae; macroziphodont dentition; tightly fitting tooth-to-tooth occlusion; and extensive macrowear on the mesial and distal margins. Plesiosuchus manselii is distinct in having: non-amblygnathous rostrum; long mandibular symphysis; microziphodont teeth; tooth-crown apices that lack spalled surfaces or breaks; and no evidence for occlusal wear facets. Our phylogenetic analysis finds Dakosaurus maximus to be the sister taxon of the South American Dakosaurus andiniensis, and Plesiosuchus manselii in a polytomy at the base of Geosaurini (the subclade of macrophagous metriorhynchids that includes Dakosaurus, Geosaurus and Torvoneustes.The sympatry of Dakosaurus and Plesiosuchus is curiously similar to North Atlantic killer whales, which have one larger 'type' that lacks tooth-crown breakage being sympatric with a smaller 'type' that has extensive crown breakage. Assuming this morphofunctional complex is indicative of diet, then Plesiosuchus would be a specialist feeding on other marine reptiles while Dakosaurus would be a generalist and possible suction-feeder. This hypothesis is supported by Plesiosuchus manselii having a very large optimum gape (gape at which multiple teeth come into contact with a prey-item, while Dakosaurus maximus possesses craniomandibular characteristics observed in extant

Revision of the Madagascan genera Oncodopus Brongniart and Colossopus Saussure (Orthoptera: Tettigoniidae: Conocephalinae; Euconchophorini), with description of Malagasopus gen. nov.

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Ünal, Mustafa; Beccaloni, George W

2017-10-31

The endemic Madagascan genera Oncodopus Brongniart and Colossopus Saussure are revised using museum specimens, including the types, and recently collected material. A new genus, Malagasopus gen. nov., and seven new species, Malagasopus desutterae sp. nov., Malagasopus meridianus sp. nov., Oncodopus janetae sp. nov., Oncodopus brongniarti sp. nov., Oncodopus saussurei sp. nov., Oncodopus soalalaensis sp. nov. and Colossopus parvicavus sp. nov. are described. Lectotypes are designated for Oncodopus zonatus Brongniart, 1897 and Colossopus redtenbacheri (Brongniart, 1897). A new term, mesothoracic auricle, is proposed for a structure on the episternum of the mesothorax. A tabulated key to the genera and keys to the species are presented. All species are described and diagnosed, and their phylogenetic relationships, geographical distributions, habitat preferences and phenologies are documented. The life history of Colossopus grandidieri is described, and the unusual possible mate-guarding behaviour of several species is discussed. Maps showing the distribution of the species are presented, as too are 57 photographs of museum specimens, 51 drawings of morphological characters, 17 photographs of living specimens and one habitat photograph.

Real-time PCR detection of Fe-type nitrile hydratase genes from environmental isolates suggests horizontal gene transfer between multiple genera.

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Coffey, Lee; Owens, Erica; Tambling, Karen; O'Neill, David; O'Connor, Laura; O'Reilly, Catherine

2010-11-01

Nitriles are widespread in the environment as a result of biological and industrial activity. Nitrile hydratases catalyse the hydration of nitriles to the corresponding amide and are often associated with amidases, which catalyze the conversion of amides to the corresponding acids. Nitrile hydratases have potential as biocatalysts in bioremediation and biotransformation applications, and several successful examples demonstrate the advantages. In this work a real-time PCR assay was designed for the detection of Fe-type nitrile hydratase genes from environmental isolates purified from nitrile-enriched soils and seaweeds. Specific PCR primers were also designed for amplification and sequencing of the genes. Identical or highly homologous nitrile hydratase genes were detected from isolates of numerous genera from geographically diverse sites, as were numerous novel genes. The genes were also detected from isolates of genera not previously reported to harbour nitrile hydratases. The results provide further evidence that many bacteria have acquired the genes via horizontal gene transfer. The real-time PCR assay should prove useful in searching for nitrile hydratases that could have novel substrate specificities and therefore potential in industrial applications.

Performance of Differents Genotyps of Brazilian Orchid Cultivation in Alternatives Substrates

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Ricardo Tadeu de Faria

2001-12-01

Full Text Available Two native Brazilian orchid especies, Oncidium baueri and Maxillaria picta, were grown in different substrate mixtures. The plants were cultivated in ceramic pots in a greenhouse with 50% of shadind light and watered three times a week. The following substrates were used: 1 de-fibered xaxim; 2xaxim cubes; 3 vermiculite; 4 carbonized rice husk; 5 charcoal; 6 charcoal + carbonized rice husk; 7 crocks; 8 vermiculite and charcoal; 9 vermiculite + carbonized rice husks; 10 extruded polystyrene + charcoal; 11 pine bark + charcoal + extruded polystyrene; 12 vermiculite + carbonized rice husks + extruded polystyrene + charcoal; 13 pine bark. The substrate ratio was 1:1 in the mixture. NPK 10-10-10 leaf fertilizer was applied every thirty days and castor bean cake and bone powder organic fertilizer were applied every ninety days. A randomized complete block design was used with 10 replications. Growth and rooting were assessed after eight months. The best alternative substrate to O. baueri was vermiculie and the best alternatives substrates to M. picta were vermiculite and charcoal and vermiculite + carbonized rice husks.Diferentes misturas de substratos foram estudados para duas variedades de orquídeas nativas do Brasil: Oncidium baueri e Maxillaria pictea. As plantas foram cultivadas em vasos de cerâmica em casa de vegetação com 50% de luminosidade e regadas 3 vezes por semana. Os substratos utilizados foram os seguintes: 1xaxim desfibrado; 2xaxim e cubos; 3vermiculita; 4casca de arroz carbonizada; 5carvão; 6carvão + casca de arroz carbonizada; 7cacos de cerâmica; 8vermiculita + carvão; 9vermiculita + casca da arroz carbonizada; 10isopor + carvão; 11casca de pinus + carvão + isopor; 12 vermiculita + casca da arroz carbonizada + isopor + carvão; 13casca de pinus. A proporção dos substratos foi de 1:1na mistura. A cada trinta dias foi realizado uma adubação foliar com NPK: 10-10-10 e a cada 90 dias uma adubação orgânica com torta de

The genera Cosmopterix Hübner and Pebobs Hodges in the New World with special attention to the Neotropical fauna (Lepidoptera: Cosmopterigidae)

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Koster, J.C.

2010-01-01

The genera Cosmopterix Hübner, [1825] and Pebobs Hodges, 1978 (Cosmopterigidae) of the New World are revised, for the Neotropical fauna for the first time. A total of 102 species is recognized and 49 species are described as new: Cosmopterix adrastea spec. nov., C. amalthea spec. nov., C. ananke

Antimicrobial effect of bee collected pollen extract to Enterobacteriaceae genera after application of bee collected pollen in their feeding

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Lukáš Hleba

2013-10-01

Full Text Available In this study we researched antimicrobial activity of bee pollen extracts to Enterobacteriaceae genera isolated from chicken intestinal tract after application of bee collected pollen in their feeding. We used well plate agar diffusion method for antimicrobial testing of bee pollen extract and disc diffusion method for antibiotic susceptibility testing of bacteria by EUCAST. Identification of bacteria was done by test kit Enterotest 24. We identified tree bacterial strains: E. coli, P. mirabilis and K. oxytoca. We determined that K. oxytoca was resistant to ampicillin only and others identified strain were sensitive to used antibiotics. Also we determined antimicrobial effect of bee pollen extract to all tested strains of Enterobacteriaceae genera which were isolated from intestinal tract of chicken after application of bee collected pollen extract in their feeding. From obtained results we could be conclude that bacteria isolated from chicken after application of bee pollen extract had more resistance to bee collected pollen extract in in vitro experiment as E. coli CCM 3988, which did not be in contact with bee pollen extract.