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Sample records for optical cardiac mapping

  1. Processing and analysis of cardiac optical mapping data obtained with potentiometric dyes.

    Science.gov (United States)

    Laughner, Jacob I; Ng, Fu Siong; Sulkin, Matthew S; Arthur, R Martin; Efimov, Igor R

    2012-10-01

    Optical mapping has become an increasingly important tool to study cardiac electrophysiology in the past 20 years. Multiple methods are used to process and analyze cardiac optical mapping data, and no consensus currently exists regarding the optimum methods. The specific methods chosen to process optical mapping data are important because inappropriate data processing can affect the content of the data and thus alter the conclusions of the studies. Details of the different steps in processing optical imaging data, including image segmentation, spatial filtering, temporal filtering, and baseline drift removal, are provided in this review. We also provide descriptions of the common analyses performed on data obtained from cardiac optical imaging, including activation mapping, action potential duration mapping, repolarization mapping, conduction velocity measurements, and optical action potential upstroke analysis. Optical mapping is often used to study complex arrhythmias, and we also discuss dominant frequency analysis and phase mapping techniques used for the analysis of cardiac fibrillation.

  2. Real-time feedback based control of cardiac restitution using optical mapping.

    Science.gov (United States)

    Kulkarni, Kanchan; Tolkacheva, Elena G

    2015-01-01

    Cardiac restitution is the shortening of the action potential duration with an increase in the heart rate. A shorter action potential duration enables a longer diastolic interval which ensures that the heart gets adequate time to refill with blood. At higher rates however, restitution becomes steep and thus, can lead to unstable electrical activity (alternans) in the heart, leading to fatal cardiac rhythms. It has been proposed that maintaining a shallow slope of cardiac restitution could have potentially anti-arrhythmic effects. Previous studies involved the control of action potential duration (APD) or diastolic interval (DI) in isolated tissue samples based on the feedback from single microelectrode recordings. This limited the spatial resolution of the feedback system. Here, we aimed to develop a real time feedback control system that enabled the detection of APDs from various single pixels based on optical mapping recordings. Stimuli were applied after a predefined fixed DI after detection of an APD. We validated our algorithm using optical mapping movies from an ex-vivo rabbit heart. Thus, we provide an optical mapping based approach for the control of cardiac restitution and a potential means to validate its anti-arrhythmic effects.

  3. Singular value decomposition of optically-mapped cardiac rotors and fibrillatory activity

    Science.gov (United States)

    Rabinovitch, A.; Biton, Y.; Braunstein, D.; Friedman, M.; Aviram, I.; Yandrapalli, S.; Pandit, S. V.; Berenfeld, O.

    2015-03-01

    Our progress of understanding how cellular and structural factors contribute to arrhythmia is hampered in part because of controversies as to whether a fibrillating heart is driven by a single, several, or multiple number of sources, whether they are focal or reentrant and how to localize them. Here we demonstrate how a novel usage of the neutral singular value decomposition (SVD) method enables the extraction of the governing spatial and temporal modes of excitation from a rotor and fibrillatory waves. Those modes highlight patterns and regions of organization in the midst of the otherwise seemingly random propagating excitation waves. We apply the method to experimental models of cardiac fibrillation in rabbit hearts. We show that SVD analysis is able to enhance the classification of the heart electrical patterns into regions harboring drivers in the form of fast reentrant activity and other regions of by-standing activity. This enhancement is accomplished without any prior assumptions regarding the spatial, temporal or spectral properties of those drivers. The analysis corroborates that the dominant mode has the highest activation rate and further reveals a new feature: a transfer of modes from the driving to passive regions resulting in a partial reaction of the passive region to the driving region.

  4. Cardiac Mapping: Utility or Futility?

    Directory of Open Access Journals (Sweden)

    Gupta Anoop Kumar

    2002-01-01

    Full Text Available Cardiac mapping is a broad term that covers several modes of mapping such as body surface,1 endocardial,2 and epicardial3 mapping. The recording and analysis of extracellular electrograms, reported as early as 1915, forms the basis for cardiac mapping.4 More commonly, cardiac mapping is performed with catheters that are introduced percutaneously into the heart chambers and sequentially record the endocardial electrograms with the purpose of correlating local electrogram to cardiac anatomy. These electrophysiological catheters are navigated and localized with the use of fluoroscopy. Nevertheless, the use of fluoroscopy for these purposes may be problematic for a number of reasons, including: 1 the inability to accurately associate intracardiac electrograms with their precise location within the heart; 2 the endocardial surface is invisible using fluoroscopy and the target sites can only be approximated by their relationship with nearby structures such as ribs, blood vessels, and the position of other catheters; 3 due to the limitations of two-dimensional fluoroscopy, navigation is not exact, time consuming, and requires multiple views to estimate the three-dimensional location of the catheter; 4 inability to accurately return the catheter precisely to a previously mapped site; and 5 exposure of the patient and medical team to radiation. Newer mapping systems have revolutionized the clinical electrophysiology laboratory in recent years and have offered new insights into arrhythmia mechanisms. They are aimed at improving the resolution, three-dimensional spatial localization, and/or rapidity of acquisition of cardiac activation maps. These systems use novel approaches to accurately determine the three-dimensional location of the mapping catheter and local electrograms are acquired using conventional, well-established methods. Recorded data of the catheter location and intracardiac electrogram at that location are used to reconstruct in real-time a

  5. Entropy Rate Maps of Complex Excitable Dynamics in Cardiac Monolayers

    Directory of Open Access Journals (Sweden)

    Alexander Schlemmer

    2015-02-01

    Full Text Available The characterization of spatiotemporal complexity remains a challenging task. This holds in particular for the analysis of data from fluorescence imaging (optical mapping, which allows for the measurement of membrane potential and intracellular calcium at high spatial and temporal resolutions and, therefore, allows for an investigation of cardiac dynamics. Dominant frequency maps and the analysis of phase singularities are frequently used for this type of excitable media. These methods address some important aspects of cardiac dynamics; however, they only consider very specific properties of excitable media. To extend the scope of the analysis, we present a measure based on entropy rates for determining spatiotemporal complexity patterns of excitable media. Simulated data generated by the Aliev–Panfilov model and the cubic Barkley model are used to validate this method. Then, we apply it to optical mapping data from monolayers of cardiac cells from chicken embryos and compare our findings with dominant frequency maps and the analysis of phase singularities. The studies indicate that entropy rate maps provide additional information about local complexity, the origins of wave breakup and the development of patterns governing unstable wave propagation.

  6. Non-invasive Mapping of Cardiac Arrhythmias.

    Science.gov (United States)

    Shah, Ashok; Hocini, Meleze; Haissaguerre, Michel; Jaïs, Pierre

    2015-08-01

    Since more than 100 years, 12-lead electrocardiography (ECG) is the standard-of-care tool, which involves measuring electrical potentials from limited sites on the body surface to diagnose cardiac disorder, its possible mechanism, and the likely site of origin. Several decades of research has led to the development of a 252-lead ECG and computed tomography (CT) scan-based three-dimensional electro-imaging modality to non-invasively map abnormal cardiac rhythms including fibrillation. These maps provide guidance towards ablative therapy and thereby help advance the management of complex heart rhythm disorders. Here, we describe the clinical experience obtained using non-invasive technique in mapping the electrical disorder and guide the catheter ablation of atrial arrhythmias (premature atrial beat, atrial tachycardia, atrial fibrillation), ventricular arrhythmias (premature ventricular beats), and ventricular pre-excitation (Wolff-Parkinson-White syndrome).

  7. Image processing for optical mapping.

    Science.gov (United States)

    Ravindran, Prabu; Gupta, Aditya

    2015-01-01

    Optical Mapping is an established single-molecule, whole-genome analysis system, which has been used to gain a comprehensive understanding of genomic structure and to study structural variation of complex genomes. A critical component of Optical Mapping system is the image processing module, which extracts single molecule restriction maps from image datasets of immobilized, restriction digested and fluorescently stained large DNA molecules. In this review, we describe robust and efficient image processing techniques to process these massive datasets and extract accurate restriction maps in the presence of noise, ambiguity and confounding artifacts. We also highlight a few applications of the Optical Mapping system.

  8. Optical mapping system for visualizing arrhythmias in isolated mouse atria.

    Science.gov (United States)

    Schmidt, Robyn; Nygren, Anders

    2006-01-01

    Optical mapping has become an important technique in the study of cardiac electrophysiology, especially in terms of investigating the mechanisms of cardiac arrhythmias. The increasing availability of transgenic mice as models for cardiovascular disease is driving the need for instrumentation suitable for the study of electrical activity in the mouse heart. In this paper we evaluate our optical mapping system's ability to clearly record induced arrhythmic activity in an isolated mouse atrial preparation. Preliminary results indicate that the signal quality is high enough that individual optically recorded action potentials can be discerned in many pixels, even without post-processing for noise removal. The optical mapping video is clear enough for general observations regarding the patterns of electrical propagation during arrhythmic behaviour. The induced arrhythmias appear to have a regular pattern of activity, and are likely best classified as atrial tachycardias.

  9. Optical Polarimetric Mapping of Ceres

    Science.gov (United States)

    Yang, Bin; Li, Jian-Yang; Kelley, Michael S.

    2016-10-01

    The dwarf planet Ceres, with one quarter of its mass possibly as water, is of particular importance to understanding the origin and the evolution history of water in the inner solar system. It is also a real-life laboratory to study astrobiology. NASA's Dawn is returning detailed geological maps of Ceres until the end of this year. As a complement to the Dawn mission, using SPHERE/ZIMPOL at one of Very Large Telescopes in Chile, we obtained the optical polarimetric maps in the I and V band of the whole surface of Ceres in July and August, 2015. Polarimetric maps of Ceres are sensitive to the physical conditions (such as packing density and particle size distribution) and composition of its surface regolith. The comparative studies between our polarimetric maps and Dawn maps help us to understand the geological evolution and the space weathering processes on Ceres' surface. At the time of the ZIMPOL observations, with the best spatial resolution of about 0.02 arcsecond (equivalent to 30 km), we effectively obtained about 700 independent measurements of the surface in one polarimetric set. I will present the SPHERE observations and discuss our major findings.

  10. Voltage and Calcium Dual Channel Optical Mapping of Cultured HL-1 Atrial Myocyte Monolayer

    Science.gov (United States)

    Zhao, Weiwei; Fast, Vladimir G.; Ye, Tong; Ai, Xun

    2015-01-01

    Optical mapping has proven to be a valuable technique to detect cardiac electrical activity on both intact ex vivo hearts and in cultured myocyte monolayers. HL-1 cells have been widely used as a 2-Dimensional cellular model for studying diverse aspects of cardiac physiology. However, it has been a great challenge to optically map calcium (Ca) transients and action potentials simultaneously from the same field of view in a cultured HL-1 atrial cell monolayer. This is because special handling and care is required to prepare healthy cells that can be electrically captured and optically mapped. Therefore, we have developed an optimal working protocol for dual channel optical mapping. In this manuscript, we have described in detail how to perform the dual channel optical mapping experiment. This protocol is a useful tool to enhance the understanding of action potential propagation and Ca kinetics in arrhythmia development. PMID:25867896

  11. Cardiac conductive system excitation maps using intracardiac tissue Doppler imaging

    Institute of Scientific and Technical Information of China (English)

    尹立雪; 郑昌琼; 蔡力; 郑翊; 李春梅; 邓燕; 罗芸; 李德玉; 赵树魁

    2003-01-01

    Objective To precisely visualize cardiac anatomic structures and simultaneously depict ele ctro-mechanical events for the purpose of precise underblood intervention. Methods Intracardiac high-resolution tissue Doppler imaging was used to map realt imemyocardial contractions in response to electrical activation within the anat omic structure of the cardiac conductive system using a canine open-chest model . Results The detailed inner anatomic structure of the cardiac conductive system at differ entsites (i.e., sino-atrial, atrial wall, atrial-ventricular node and ventr icular wall) with the inside onset and propagation of myocardial velocity and ac celeration induced by electrical activation was clearly visualized and quan titatively evaluated.Conclusion The simultaneous single modality visualization of the anatomy, function and electrical events of the cardiac conductive system will foster target pacing and pre cision ablation.

  12. Altering embryonic cardiac dynamics with optical pacing.

    Science.gov (United States)

    Peterson, L M; McPheeters, M; Barwick, L; Gu, S; Rollins, A M; Jenkins, M W

    2012-01-01

    Several studies have shown that altering blood flow early in development leads to congenital heart defects. In these studies the perturbations to hemodynamics were very gross manipulations (vessel ligation, conotruncal banding, etc.) that would be inappropriate for probing the delicate mechanisms responsible for mechanically-transduced signaling. Also, these perturbations lacked feedback from a monitoring system to determine the exact degree of alteration and the location of its effect. Here, we employed optical pacing (OP) to alter the heart rate in quail embryos and optical coherence tomography (OCT) to measure the resultant shear forces on the endocardium. OP is a new technique utilizing pulsed 1.851 µm infrared laser light to noninvasively capture the heart rate to the pulse frequency of the laser without the use of exogenous agents. To measure shear stress on the endocardium, we extended our previous OCT algorithms to enable the production of 4-D shear maps. 4-D shear maps allowed observation of the spatial and temporal distribution of shear stress. Employing both OCT and OP, we were able to develop perturbation protocols that increase regurgitant flow and greatly modify the oscillatory shear index (OSI) in a region of the heart tube where future valves will develop. Regurgitant flow has been linked with valve development and precise perturbations may allow one to determine the role of hemodynamics in valvulogenesis.

  13. Mapping cardiac surface mechanics with structured light imaging.

    Science.gov (United States)

    Laughner, Jacob I; Zhang, Song; Li, Hao; Shao, Connie C; Efimov, Igor R

    2012-09-15

    Cardiovascular disease often manifests as a combination of pathological electrical and structural heart remodeling. The relationship between mechanics and electrophysiology is crucial to our understanding of mechanisms of cardiac arrhythmias and the treatment of cardiac disease. While several technologies exist for describing whole heart electrophysiology, studies of cardiac mechanics are often limited to rhythmic patterns or small sections of tissue. Here, we present a comprehensive system based on ultrafast three-dimensional (3-D) structured light imaging to map surface dynamics of whole heart cardiac motion. Additionally, we introduce a novel nonrigid motion-tracking algorithm based on an isometry-maximizing optimization framework that forms correspondences between consecutive 3-D frames without the use of any fiducial markers. By combining our 3-D imaging system with nonrigid surface registration, we are able to measure cardiac surface mechanics at unprecedented spatial and temporal resolution. In conclusion, we demonstrate accurate cardiac deformation at over 200,000 surface points of a rabbit heart recorded at 200 frames/s and validate our results on highly contrasting heart motions during normal sinus rhythm, ventricular pacing, and ventricular fibrillation.

  14. PET and SPET tracers for mapping the cardiac nervous system

    Energy Technology Data Exchange (ETDEWEB)

    Langer, Oliver; Halldin, Christer [Department of Clinical Neuroscience, Psychiatry Section, Karolinska Institute, Karolinska Hospital, 17176 Stockholm (Sweden)

    2002-03-01

    The human cardiac nervous system consists of a sympathetic and a parasympathetic branch with (-)-norepinephrine and acetylcholine as the respective endogenous neurotransmitters. Dysfunction of the cardiac nervous system is implicated in various types of cardiac disease, such as heart failure, myocardial infarction and diabetic autonomic neuropathy. In vivo assessment of the distribution and function of cardiac sympathetic and parasympathetic neurones with positron emission tomography (PET) and single-photon emission tomography (SPET) can be achieved by means of a number of carbon-11-, fluorine-18-, bromine-76- and iodine-123-labelled tracer molecules. Available tracers for mapping sympathetic neurones can be divided into radiolabelled catecholamines, such as 6-[{sup 18}F]fluorodopamine, (-)-6-[{sup 18}F]fluoronorepinephrine and (-)-[{sup 11}C]epinephrine, and radiolabelled catecholamine analogues, such as [{sup 123}I]meta-iodobenzylguanidine, [{sup 11}C]meta-hydroxyephedrine, [{sup 18}F]fluorometaraminol, [{sup 11}C]phenylephrine and meta-[{sup 76}Br]bromobenzylguanidine. Resistance to metabolism by monoamine oxidase and catechol-O-methyl transferase simplifies the myocardial kinetics of the second group. Both groups of compounds are excellent agents for an overall assessment of sympathetic innervation. Biomathematical modelling of tracer kinetics is complicated by the complexity of the steps governing neuronal uptake, retention and release of these agents as well as by their high neuronal affinity, which leads to partial flow dependence of uptake. Mapping of cardiac parasympathetic neurones is limited by a low density and focal distribution pattern of these neurones in myocardium. Available tracers are derivatives of vesamicol, a molecule that binds to a receptor associated with the vesicular acetylcholine transporter. Compounds like (-)-[{sup 18}F]fluoroethoxybenzovesamicol display a high degree of non-specific binding in myocardium which restricts their utility

  15. Hybrid optical acoustic seafloor mapping

    Science.gov (United States)

    Inglis, Gabrielle

    The oceanographic research and industrial communities have a persistent demand for detailed three dimensional sea floor maps which convey both shape and texture. Such data products are used for archeology, geology, ship inspection, biology, and habitat classification. There are a variety of sensing modalities and processing techniques available to produce these maps and each have their own potential benefits and related challenges. Multibeam sonar and stereo vision are such two sensors with complementary strengths making them ideally suited for data fusion. Data fusion approaches however, have seen only limited application to underwater mapping and there are no established methods for creating hybrid, 3D reconstructions from two underwater sensing modalities. This thesis develops a processing pipeline to synthesize hybrid maps from multi-modal survey data. It is helpful to think of this processing pipeline as having two distinct phases: Navigation Refinement and Map Construction. This thesis extends existing work in underwater navigation refinement by incorporating methods which increase measurement consistency between both multibeam and camera. The result is a self consistent 3D point cloud comprised of camera and multibeam measurements. In map construction phase, a subset of the multi-modal point cloud retaining the best characteristics of each sensor is selected to be part of the final map. To quantify the desired traits of a map several characteristics of a useful map are distilled into specific criteria. The different ways that hybrid maps can address these criteria provides justification for producing them as an alternative to current methodologies. The processing pipeline implements multi-modal data fusion and outlier rejection with emphasis on different aspects of map fidelity. The resulting point cloud is evaluated in terms of how well it addresses the map criteria. The final hybrid maps retain the strengths of both sensors and show significant improvement

  16. Linear optics and quantum maps

    CERN Document Server

    Aiello, A; Woerdman, J P

    2006-01-01

    We present a theoretical analysis of the connection between classical polarization optics and quantum mechanics of two-level systems. First, we review the matrix formalism of classical polarization optics from a quantum information perspective. In this manner the passage from the Stokes-Jones-Mueller description of classical optical processes to the representation of one- and two-qubit quantum operations, becomes straightforward. Second, as a practical application of our classical-\\emph{vs}-quantum formalism, we show how two-qubit maximally entangled mixed states (MEMS), can be generated by using polarization and spatial modes of photons generated via spontaneous parametric down conversion.

  17. Optical control of excitation waves in cardiac tissue

    Science.gov (United States)

    Burton, Rebecca A. B.; Klimas, Aleksandra; Ambrosi, Christina M.; Tomek, Jakub; Corbett, Alex; Entcheva, Emilia; Bub, Gil

    2015-12-01

    In nature, macroscopic excitation waves are found in a diverse range of settings including chemical reactions, metal rust, yeast, amoeba and the heart and brain. In the case of living biological tissue, the spatiotemporal patterns formed by these excitation waves are different in healthy and diseased states. Current electrical and pharmacological methods for wave modulation lack the spatiotemporal precision needed to control these patterns. Optical methods have the potential to overcome these limitations, but to date have only been demonstrated in simple systems, such as the Belousov-Zhabotinsky chemical reaction. Here, we combine dye-free optical imaging with optogenetic actuation to achieve dynamic control of cardiac excitation waves. Illumination with patterned light is demonstrated to optically control the direction, speed and spiral chirality of such waves in cardiac tissue. This all-optical approach offers a new experimental platform for the study and control of pattern formation in complex biological excitable systems.

  18. Cardiac activation mapping using ultrasound current source density imaging (UCSDI).

    Science.gov (United States)

    Olafsson, Ragnar; Witte, Russell S; Jia, Congxian; Huang, Sheng-Wen; Kim, Kang; O'Donnell, Matthew

    2009-03-01

    We describe the first mapping of biological current in a live heart using ultrasound current source density imaging (UCSDI). Ablation procedures that treat severe heart arrhythmias require detailed maps of the cardiac activation wave. The conventional procedure is time-consuming and limited by its poor spatial resolution (5-10 mm). UCSDI can potentially improve on existing mapping procedures. It is based on a pressure-induced change in resistivity known as the acousto-electric (AE) effect, which is spatially confined to the ultrasound focus. Data from 2 experiments are presented. A 540 kHz ultrasonic transducer (f/# = 1, focal length = 90 mm, pulse repetition frequency = 1600 Hz) was scanned over an isolated rabbit heart perfused with an excitation-contraction decoupler to reduce motion significantly while retaining electric function. Tungsten electrodes inserted in the left ventricle recorded simultaneously the AE signal and the low-frequency electrocardiogram (ECG). UCSDI displayed spatial and temporal patterns consistent with the spreading activation wave. The propagation velocity estimated from UCSDI was 0.25 +/- 0.05 mm/ms, comparable to the values obtained with the ECG signals. The maximum AE signal-to-noise ratio after filtering was 18 dB, with an equivalent detection threshold of 0.1 mA/ cm(2). This study demonstrates that UCSDI is a potentially powerful technique for mapping current flow and biopotentials in the heart.

  19. Three-dimensional correction of conduction velocity in the embryonic heart using integrated optical mapping and optical coherence tomography

    Science.gov (United States)

    Ma, Pei; Wang, Yves T.; Gu, Shi; Watanabe, Michiko; Jenkins, Michael W.; Rollins, Andrew M.

    2014-07-01

    Optical mapping (OM) of cardiac electrical activity conventionally collects information from a three-dimensional (3-D) surface as a two-dimensional (2-D) projection map. When applied to measurements of the embryonic heart, this method ignores the substantial and complex curvature of the heart surface, resulting in significant errors when calculating conduction velocity, an important electrophysiological parameter. Optical coherence tomography (OCT) is capable of imaging the 3-D structure of the embryonic heart and accurately characterizing the surface topology. We demonstrate an integrated OCT/OM imaging system capable of simultaneous conduction mapping and 3-D structural imaging. From these multimodal data, we obtained 3-D activation maps and corrected conduction velocity maps of early embryonic quail hearts. 3-D correction eliminates underestimation bias in 2-D conduction velocity measurements, therefore enabling more accurate measurements with less experimental variability. The integrated system will also open the door to correlate the structure and electrophysiology, thereby improving our understanding of heart development.

  20. Mapping cardiac fiber orientations from high-resolution DTI to high-frequency 3D ultrasound

    Science.gov (United States)

    Qin, Xulei; Wang, Silun; Shen, Ming; Zhang, Xiaodong; Wagner, Mary B.; Fei, Baowei

    2014-03-01

    The orientation of cardiac fibers affects the anatomical, mechanical, and electrophysiological properties of the heart. Although echocardiography is the most common imaging modality in clinical cardiac examination, it can only provide the cardiac geometry or motion information without cardiac fiber orientations. If the patient's cardiac fiber orientations can be mapped to his/her echocardiography images in clinical examinations, it may provide quantitative measures for diagnosis, personalized modeling, and image-guided cardiac therapies. Therefore, this project addresses the feasibility of mapping personalized cardiac fiber orientations to three-dimensional (3D) ultrasound image volumes. First, the geometry of the heart extracted from the MRI is translated to 3D ultrasound by rigid and deformable registration. Deformation fields between both geometries from MRI and ultrasound are obtained after registration. Three different deformable registration methods were utilized for the MRI-ultrasound registration. Finally, the cardiac fiber orientations imaged by DTI are mapped to ultrasound volumes based on the extracted deformation fields. Moreover, this study also demonstrated the ability to simulate electricity activations during the cardiac resynchronization therapy (CRT) process. The proposed method has been validated in two rat hearts and three canine hearts. After MRI/ultrasound image registration, the Dice similarity scores were more than 90% and the corresponding target errors were less than 0.25 mm. This proposed approach can provide cardiac fiber orientations to ultrasound images and can have a variety of potential applications in cardiac imaging.

  1. Electrophoretic High Molecular Weight DNA Purification Enables Optical Mapping

    OpenAIRE

    Maydan, Jason; THOMAS, Matthew; Tabanfar, Leyla; Mai, Laura; Poon, Hau-Ling; Pe, Joel; HAHN, KRISTEN; Goji, Noriko; Amoako, Kingsley; Marziali, Andre; Hanson, Dan

    2013-01-01

    Optical mapping generates an ordered restriction map from single, long DNA molecules. By overlapping restriction maps from multiple molecules, a physical map of entire chromosomes and genomes is constructed, greatly facilitating genome assembly in next generation sequencing projects, comparative genomics and strain typing. However, optical mapping relies on a method of preparing high quality DNA >250 kb in length, which can be challenging from some organisms and sample types. Here we demonstr...

  2. "Almost Darks": HI Mapping and Optical Analysis

    Science.gov (United States)

    Singer, Quinton; Ball, Catie; Cannon, John M.; Leisman, Luke; Haynes, Martha P.; Adams, Elizabeth A.; Bernal Neira, David; Giovanelli, Riccardo; Hallenbeck, Gregory L.; Janesh, William; Janowiecki, Steven; Jozsa, Gyula; Rhode, Katherine L.; Salzer, John Joseph

    2017-01-01

    We present VLA HI imaging of the "Almost Dark" galaxies AGC 227982, AGC 268363, and AGC 219533. Selected from the ALFALFA survey, "Almost Dark" galaxies have significant HI reservoirs but lack an obvious stellar counterpart in survey-depth ground-based optical imaging. These three HI-rich objects harbor some of the most extreme levels of suppressed star formation amongst the isolated sources in the ALFALFA catalog. Our new multi-configuration, high angular (~20") and spectral (1.7 km/s) resolution HI observations produce spatially resolved column density and velocity distribution moment maps. We compare these images to Sloan Digitized Sky Survey (SDSS) optical images. By localizing the HI gas, we identify previously unknown optical components (offset from the ALFALFA pointing center) for AGC 227982 and AGC 268363, and confirm the association with a very low surface brightness stellar counterpart for AGC 219533. Baryonic masses are derived from VLA flux integral values and ALFALFA distance estimates, giving answers consistent with those derived from ALFALFA fluxes. All three sources appear to have fairly regular HI morphologies and show evidence of ordered rotation.Support for this work was provided by NSF grant 1211683 to JMC at Macalester College.

  3. Optical mapping of nonmelanoma skin cancer

    Science.gov (United States)

    Yaroslavsky, Anna N.; Neel, Victor; Anderson, Richard R.

    2004-07-01

    More than two million cases of nonmelanoma skin cancers are diagnosed every year. Therefore, there is a strong need for practical, reliable, rapid, and precise methods for tumor delineation, to guide surgery and other treatments of skin cancer. Once developed, such methods may be useful for squamous cell carcinomas of other organs. Non-invasive optical imaging techniques including polarization sensitive reflectance and fluorescence imaging were evaluated for the demarcation of nonmelanoma skin tumors. Thick freshly excised tumor specimens obtained from Mohs surgery were used for the experiments. Imaging was performed using linearly polarized incident light in the visible and near infrared spectral range from 577 nm to 750 nm. Non-toxic absorbing and fluorescent dyes (Toluidine Blue O, Methylene Blue) were employed to enhance tumor contrast in the images. The images were acquired using the remitted light polarized in the directions parallel and perpendicular to the polarization of incident light. Reflectance and fluorescence polarization images were evaluated. The data were processed and analyzed for dependence of the remitted light polarization on the tissue type (cancerous/normal). The data obtained so far from fresh tumor specimens in vitro using dye-enhanced polarized light reflectance, and exogenous fluorescence polarization imaging suggest that optical mapping can become a valuable guidance tool in nonmelanoma cancer surgery.

  4. Combination of principal component analysis and optical-flow motion compensation for improved cardiac MR thermometry

    Science.gov (United States)

    Toupin, S.; de Senneville, B. Denis; Ozenne, V.; Bour, P.; Lepetit-Coiffe, M.; Boissenin, M.; Jais, P.; Quesson, B.

    2017-02-01

    The use of magnetic resonance (MR) thermometry for the monitoring of thermal ablation is rapidly expanding. However, this technique remains challenging for the monitoring of the treatment of cardiac arrhythmia by radiofrequency ablation due to the heart displacement with respiration and contraction. Recent studies have addressed this problem by compensating in-plane motion in real-time with optical-flow based tracking technique. However, these algorithms are sensitive to local variation of signal intensity on magnitude images associated with tissue heating. In this study, an optical-flow algorithm was combined with a principal component analysis method to reduce the impact of such effects. The proposed method was integrated to a fully automatic cardiac MR thermometry pipeline, compatible with a future clinical workflow. It was evaluated on nine healthy volunteers under free breathing conditions, on a phantom and in vivo on the left ventricle of a sheep. The results showed that local intensity changes in magnitude images had lower impact on motion estimation with the proposed method. Using this strategy, the temperature mapping accuracy was significantly improved.

  5. Electrophoretic High Molecular Weight DNA Purification Enables Optical Mapping

    Science.gov (United States)

    Maydan, Jason; Thomas, Matthew; Tabanfar, Leyla; Mai, Laura; Poon, Hau-Ling; Pe, Joel; Hahn, Kristen; Goji, Noriko; Amoako, Kingsley; Marziali, Andre; Hanson, Dan

    2013-01-01

    Optical mapping generates an ordered restriction map from single, long DNA molecules. By overlapping restriction maps from multiple molecules, a physical map of entire chromosomes and genomes is constructed, greatly facilitating genome assembly in next generation sequencing projects, comparative genomics and strain typing. However, optical mapping relies on a method of preparing high quality DNA >250 kb in length, which can be challenging from some organisms and sample types. Here we demonstrate the ability of Boreal Genomics' Aurora instrument to provide pure, high molecular weight (HMW) DNA 250-1,100 kb in length, ideally suited for optical mapping. The Aurora performs electrophoretic DNA purification within an agarose gel in reusable cartridges, protecting long DNA molecules from shearing forces associated with liquid handling steps common to other purification methods. DNA can be purified directly from intact cells embedded and lysed within an agarose gel, preserving the highest molecular weight DNA possible while achieving exceptional levels of purity. The Aurora delivers DNA in a buffer solution, where DNA can be condensed and protected from shearing during recovery with a pipette. DNA is then returned to its regular coiled state by simple dilution prior to optical mapping. Here we present images showing HMW DNA purification taking place in the Aurora and subsequent images of single DNA molecules on OpGen's Argus® Optical Mapping System. Future work will focus on further optimizing Aurora HMW DNA purification to bias DNA recovery in favor of only the longest molecules in a sample, maximizing the benefits of optical mapping.

  6. Whole-genome shotgun optical mapping of Rhodospirillum rubrum

    Energy Technology Data Exchange (ETDEWEB)

    Reslewic, S. [Univ. Wisc.-Madison; Zhou, S. [Univ. Wisc.-Madison; Place, M. [Univ. Wisc.-Madison; Zhang, Y. [Univ. Wisc.-Madison; Briska, A. [Univ. Wisc.-Madison; Goldstein, S. [Univ. Wisc.-Madison; Churas, C. [Univ. Wisc.-Madison; Runnheim, R. [Univ. Wisc.-Madison; Forrest, D. [Univ. Wisc.-Madison; Lim, A. [Univ. Wisc.-Madison; Lapidus, A. [Univ. Wisc.-Madison; Han, C. S. [Univ. Wisc.-Madison; Roberts, G. P. [Univ. Wisc.-Madison; Schwartz, D. C. [Univ. Wisc.-Madison

    2005-09-01

    Rhodospirillum rubrum is a phototrophic purple nonsulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems and as a source of hydrogen and biodegradable plastic production. To better understand this organism and to facilitate assembly of its sequence, three whole-genome restriction endonuclease maps (XbaI, NheI, and HindIII) of R. rubrum strain ATCC 11170 were created by optical mapping. Optical mapping is a system for creating whole-genome ordered restriction endonuclease maps from randomly sheared genomic DNA molecules extracted from cells. During the sequence finishing process, all three optical maps confirmed a putative error in sequence assembly, while the HindIII map acted as a scaffold for high-resolution alignment with sequence contigs spanning the whole genome. In addition to highlighting optical mapping's role in the assembly and confirmation of genome sequence, this work underscores the unique niche in resolution occupied by the optical mapping system. With a resolution ranging from 6.5 kb (previously published) to 45 kb (reported here), optical mapping advances a "molecular cytogenetics" approach to solving problems in genomic analysis.

  7. Whole-genome shotgun optical mapping of rhodospirillumrubrum

    Energy Technology Data Exchange (ETDEWEB)

    Reslewic, Susan; Zhou, Shiguo; Place, Mike; Zhang, Yaoping; Briska, Adam; Goldstein, Steve; Churas, Chris; Runnheim, Rod; Forrest,Dan; Lim, Alex; Lapidus, Alla; Han, Cliff S.; Roberts, Gary P.; Schwartz,David C.

    2004-07-01

    Rhodospirillum rubrum is a phototrophic purple non-sulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems, and as a source of hydrogen and biodegradable plastics production. To better understand this organism and to facilitate assembly of its sequence, three whole-genome restriction maps (Xba I, Nhe I, and Hind III) of R. rubrum strain ATCC 11170 were created by optical mapping. Optical mapping is a system for creating whole-genome ordered restriction maps from randomly sheared genomic DNA molecules extracted directly from cells. During the sequence finishing process, all three optical maps confirmed a putative error in sequence assembly, while the Hind III map acted as a scaffold for high resolution alignment with sequence contigs spanning the whole genome. In addition to highlighting optical mapping's role in the assembly and validation of genome sequence, our work underscores the unique niche in resolution occupied by the optical mapping system. With a resolution ranging from 6.5 kb (previously published) to 45 kb (reported here), optical mapping advances a ''molecular cytogenetics'' approach to solving problems in genomic analysis.

  8. Three-Dimensional Cardiac Mapping Characterizes Ventricular Contractile Patterns during Cardiac Resynchronization Therapy Implant: A Feasibility Study.

    Science.gov (United States)

    Niazi, Imran K; Sperzel, Johannes; Heist, Edwin Kevin; Rosenberg, Stuart P; Ryu, Kyungmoo; Yang, Michael; D'Avila, Andre; Singh, Jagmeet P

    2015-09-01

    Electroanatomic mapping systems track the position of electrodes in the heart. We assessed the feasibility of characterizing left ventricular (LV) performance during cardiac resynchronization therapy (CRT) implant utilizing an electroanatomic mapping system to track the motion of CRT lead electrodes, thus deriving ventricular contractility surrogates. During CRT implant, atrial, right ventricular (RV), and LV leads were connected to the EnSite NavX™ mapping system (St. Jude Medical Inc., St. Paul, MN, USA). The relative displacement of electrodes was averaged over 10 cardiac cycles during RV, LV, and biventricular (BiV) pacing in DOO mode. Three contractility surrogates indicative of ventricular performance were extracted from the RV-LV distance waveform: systolic slope (SS), time to peak systolic contraction (TPSC), and fractional shortening (FS). In the 20 patients included, there were detectable differences in each of the three contractility surrogates responding to the different pacing configurations. Median SS varied 42%, median TPSC varied 35%, and median FS varied 19% across RV, LV, and BiV pacing interventions. The RV-LV distance waveform showed subtle sensitivity to varying pacing timing cycles when measured in a subset of patients. For all pacing configurations, RV-LV distance waveforms were stable during 2-minute recordings. Tracking the motion of CRT pacing electrodes with a mapping system to derive contractility surrogates during implant is feasible. © 2015 Wiley Periodicals, Inc.

  9. Intraoperative cardiac mapping in the treatment of an infant congenital fibroma.

    Science.gov (United States)

    Sakamoto, Shun-Ichiro; Shibata, Masafumi; Murata, Hiroshige; Nitta, Takashi

    2015-03-01

    Surgical treatment for ventricular tachycardia associated with congenital cardiac tumors is rare. Intraoperative electroanatomic mapping was performed in a 23-month-old female infant to identify the arrhythmogenic substrate of the epicardium before tumor resection. Verification of the localized abnormal electrocardiogram on the tumor in the treatment of ventricular tachycardia was useful for successful partial resection and cryoablation of the giant fibroma.

  10. Imminent Cardiac Risk Assessment via Optical Intravascular Biochemical Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Wetzel, D.; Wetzel, L; Wetzel, M; Lodder, R

    2009-01-01

    Heart disease is by far the biggest killer in the United States, and type II diabetes, which affects 8% of the U.S. population, is on the rise. In many cases, the acute coronary syndrome and/or sudden cardiac death occurs without warning. Atherosclerosis has known behavioral, genetic and dietary risk factors. However, our laboratory studies with animal models and human post-mortem tissue using FT-IR microspectroscopy reveal the chemical microstructure within arteries and in the arterial walls themselves. These include spectra obtained from the aortas of ApoE-/- knockout mice on sucrose and normal diets showing lipid deposition in the former case. Also pre-aneurysm chemical images of knockout mouse aorta walls, and spectra of plaque excised from a living human patient are shown for comparison. In keeping with the theme of the SPEC 2008 conference Spectroscopic Diagnosis of Disease this paper describes the background and potential value of a new catheter-based system to provide in vivo biochemical analysis of plaque in human coronary arteries. We report the following: (1) results of FT-IR microspectroscopy on animal models of vascular disease to illustrate the localized chemical distinctions between pathological and normal tissue, (2) current diagnostic techniques used for risk assessment of patients with potential unstable coronary syndromes, and (3) the advantages and limitations of each of these techniques illustrated with patent care histories, related in the first person, by the physician coauthors. Note that the physician comments clarify the contribution of each diagnostic technique to imminent cardiac risk assessment in a clinical setting, leading to the appreciation of what localized intravascular chemical analysis can contribute as an add-on diagnostic tool. The quality of medical imaging has improved dramatically since the turn of the century. Among clinical non-invasive diagnostic tools, laboratory tests of body fluids, EKG, and physical examination are

  11. Mapping Nanoscale Electromagnetic Near-Field Distributions Using Optical Forces

    CERN Document Server

    Huang, Fei; Mardy, Zahra; Burdett, Jonathan; Wickramasinghe, H Kumar

    2014-01-01

    We demonstrate the application of Atomic Force Microscopy (AFM) based optical force microscopy to map the optical near-fields with nanometer resolution, limited only by the AFM probe geometry. We map the electric field distributions of tightly focused laser beams with different polarizations and show that the experimentally measured data agrees well with the theoretical predictions from a dipole-dipole interaction model, thereby validating our approach. We further validate the proposed technique by evaluating the optical electric field scattered by a spherical nanoparticle by measuring the optical forces between the nanoparticle and gold coated AFM probe. The technique allows for wavelength independent, background free, thermal noise limited mechanical imaging of optical phenomenon with sensitivity limited by AFM performance. Optical forces due to both electric and magnetic dipole-dipole interactions can be measured using this technique.

  12. Mechanical and optical characteristics of a new fiber optical system used for cardiac contraction measurement.

    Science.gov (United States)

    Kloppe, A; Hoeland, K; Müller, S; Hexamer, M; Nowack, G; Mügge, A; Werner, J

    2004-10-01

    In order to obtain a better physiological performance and a closer restoration of the regular rhythm of failing hearts, a new fiber optical sensor system for the measurement of cardiac contraction has been developed. It consists of an opto-electrical unit and a sensing fiber which has to be positioned in the heart. The objective of this new fiber optic sensor system is to use the inotropic information to adjust a stimulation algorithm in single or multichamber pacing or to detect arrhythmia in insufficient heart function. In this study, the mechanical and optical characteristics of different fibers are investigated. The relationship between the attenuation (with an achieved numerical maximum of 0.3 dB), the bending diameter and the angle of bending is determined in a range of 20-160 mm. The most suitable fiber for the application in cardiological problems is determined (WT8 fiber), for which the sensitivity is analyzed. Additionally, power spectra are calculated from WT8 fiber signals obtained from pig hearts, working under physiological conditions. The maximal frequency response was 23 Hz. It is concluded that the fiber optical measurement of cardiac contraction is not only feasible and reproducible, but the WT8 fiber also shows optimal behavior in the range of parameters occurring in the heart chambers. Nevertheless, in order to restrict the measured signal reliably to bending processes within the chambers only, it is concluded that a special combined fiber has to be constructed with a high sensitivity only at its terminal section within the heart.

  13. Low-Cost Optical Mapping Systems for Panoramic Imaging of Complex Arrhythmias and Drug-Action in Translational Heart Models

    Science.gov (United States)

    Lee, Peter; Calvo, Conrado J.; Alfonso-Almazán, José M.; Quintanilla, Jorge G.; Chorro, Francisco J.; Yan, Ping; Loew, Leslie M.; Filgueiras-Rama, David; Millet, José

    2017-02-01

    Panoramic optical mapping is the primary method for imaging electrophysiological activity from the entire outer surface of Langendorff-perfused hearts. To date, it is the only method of simultaneously measuring multiple key electrophysiological parameters, such as transmembrane voltage and intracellular free calcium, at high spatial and temporal resolution. Despite the impact it has already had on the fields of cardiac arrhythmias and whole-heart computational modeling, present-day system designs precludes its adoption by the broader cardiovascular research community because of their high costs. Taking advantage of recent technological advances, we developed and validated low-cost optical mapping systems for panoramic imaging using Langendorff-perfused pig hearts, a clinically-relevant model in basic research and bioengineering. By significantly lowering financial thresholds, this powerful cardiac electrophysiology imaging modality may gain wider use in research and, even, teaching laboratories, which we substantiated using the lower-cost Langendorff-perfused rabbit heart model.

  14. Non invasive cardiac vein mapping: Role of multislice CT coronary angiography

    Energy Technology Data Exchange (ETDEWEB)

    Malago, Roberto, E-mail: robertomalag@yahoo.it [Radiology Department, University Hospital Policlinico G.B.Rossi, P.le L.A. Scuro 10, 37134 Verona (Italy); Pezzato, Andrea; Barbiani, Camilla; Sala, Giuseppe; Zamboni, Giulia A. [Radiology Department, University Hospital Policlinico G.B.Rossi, P.le L.A. Scuro 10, 37134 Verona (Italy); Tavella, Domenico [Cardiology Service, University Hospital Policlinico G.B.Rossi, P.le L.A. Scuro 10, 37134 Verona (Italy); Mucelli, Roberto Pozzi [Radiology Department, University Hospital Policlinico G.B.Rossi, P.le L.A. Scuro 10, 37134 Verona (Italy)

    2012-11-15

    Purpose: Coronary venous anatomy is of primary importance when implanting a cardiac resynchronization therapy device, besides, the coronary sinus can be differently enlarged depending on chronic heart failure. The aim of this study is to evaluate the usefulness of Coronary CTA in describing the coronary venous tree and in particular the coronary sinus and detecting main venous system variants. Materials and methods: 301 consecutive patients (196 Male-Sign , mean age 63.74 years) studied for coronary artery disease with 64 slice Coronary CTA were retrospectively examined. The acquisition protocol was the standard acquisition one used for coronary artery evaluation but the cardiac venous system were visualized. The cardiac venous system was depicted using 3D, MPR, cMPR and MIP post-processing reconstructions on an off-line workstation. For each patient image quality, presence and caliber of the coronary sinus (CS), great cardiac vein (GCV), middle vein (MV), anterior interventricular vein (AIV), lateral cardiac vein (LCV), posterior cardiac vein (PCV), small cardiac vein (SCV) and presence of variant of the normal anatomy were examined and recorded. Results: CS, GCV, MV and AIV were visualized in 100% of the cases. The LCV was visualized in 255/301 (84%) patients, the PCV in 248/301 (83%) patients and the SCV in 69/301 (23%) patients. Mean diameter of the CS was 8.7 mm in 276/301 (91.7%) patients without chronic heart failure and 9.93 mm in 25/301 (8.3%) patients with chronic heart failure. Conclusions: Coronary CTA allows non invasive mapping of the cardiac venous system and may represent a useful presurgical tool for biventricular pacemaker devices implantation.

  15. A Portable Diagnostic Device for Cardiac Magnetic Field Mapping

    CERN Document Server

    Mooney, John W; Banham, Edward Reade; Symonds, Chris; Pawlowski, Nick; Varcoe, Benjamin T H

    2016-01-01

    In this paper we present a portable magnetocardiography device. The focus of this development was delivering a rapid assessment of chest pain in an emergency department. The aim was therefore to produce an inexpensive device that could be rapidly deployed in a noisy unshielded ward environment. We found that induction coil magnetometers with a coil design optimized for magnetic field mapping possess sufficient sensitivity (290f T /{\\mu}V at 30Hz) and low enough noise (73pT raw, 2.1pT after 500 averages) for cycle averaged magnetocardiography and are able to measure depolarisation signals in an unshielded environment. We were unable to observe repolarisation signals to a reasonable fidelity. We present the design of the induction coil sensor array and signal processing routine along with data demonstrating performance in a hospital environment.

  16. Mapping distributed brain function and networks with diffuse optical tomography

    Science.gov (United States)

    Eggebrecht, Adam T.; Ferradal, Silvina L.; Robichaux-Viehoever, Amy; Hassanpour, Mahlega S.; Dehghani, Hamid; Snyder, Abraham Z.; Hershey, Tamara; Culver, Joseph P.

    2014-06-01

    Mapping of human brain function has revolutionized systems neuroscience. However, traditional functional neuroimaging by positron emission tomography or functional magnetic resonance imaging cannot be used when applications require portability, or are contraindicated because of ionizing radiation (positron emission tomography) or implanted metal (functional magnetic resonance imaging). Optical neuroimaging offers a non-invasive alternative that is radiation free and compatible with implanted metal and electronic devices (for example, pacemakers). However, optical imaging technology has heretofore lacked the combination of spatial resolution and wide field of view sufficient to map distributed brain functions. Here, we present a high-density diffuse optical tomography imaging array that can map higher-order, distributed brain function. The system was tested by imaging four hierarchical language tasks and multiple resting-state networks including the dorsal attention and default mode networks. Finally, we imaged brain function in patients with Parkinson's disease and implanted deep brain stimulators that preclude functional magnetic resonance imaging.

  17. Non-invasive cardiac mapping in clinical practice: Application to the ablation of cardiac arrhythmias.

    Science.gov (United States)

    Dubois, Rémi; Shah, Ashok J; Hocini, Mélèze; Denis, Arnaud; Derval, Nicolas; Cochet, Hubert; Sacher, Frédéric; Bear, Laura; Duchateau, Josselin; Jais, Pierre; Haissaguerre, Michel

    2015-01-01

    Ten years ago, electrocardiographic imaging (ECGI) started to demonstrate its efficiency in clinical settings. The initial application to localize focal ventricular arrhythmias such as ventricular premature beats was probably the easiest to challenge and validates the concept. Our clinical experience in using this non-invasive mapping technique to identify the sources of electrical disorders and guide catheter ablation of atrial arrhythmias (premature atrial beat, atrial tachycardia, atrial fibrillation), ventricular arrhythmias (premature ventricular beats) and ventricular pre-excitation (Wolff-Parkinson-White syndrome) is described here.

  18. Optical Mapping of Release Properties in Synapses

    OpenAIRE

    Pablo Ariel; Ryan, Timothy A.

    2010-01-01

    Synapses are important functional units that determine how information flows through the brain. Understanding their biophysical properties and the molecules that underpin them is an important goal of cellular neuroscience. Thus, it is of interest to develop protocols that allow easy measurement of synaptic parameters in model systems that permit molecular manipulations. Here, we used a sensitive and high-time resolution optical approach that allowed us to characterize two functional parameter...

  19. Cardiac magnetic field map topology quantified by Kullback-Leibler entropy identifies patients with hypertrophic cardiomyopathy

    Science.gov (United States)

    Schirdewan, A.; Gapelyuk, A.; Fischer, R.; Koch, L.; Schütt, H.; Zacharzowsky, U.; Dietz, R.; Thierfelder, L.; Wessel, N.

    2007-03-01

    Hypertrophic cardiomyopathy (HCM) is a common primary inherited cardiac muscle disorder, defined clinically by the presence of unexplained left ventricular hypertrophy. The detection of affected patients remains challenging. Genetic testing is limited because only in 50%-60% of all HCM diagnoses an underlying mutation can be found. Furthermore, the disease has a varied clinical course and outcome, with many patients having little or no discernible cardiovascular symptoms, whereas others develop profound exercise limitation and recurrent arrhythmias or sudden cardiac death. Therefore prospective screening of HCM family members is strongly recommended. According to the current guidelines this includes serial echocardiographic and electrocardiographic examinations. In this study we investigated the capability of cardiac magnetic field mapping (CMFM) to detect patients suffering from HCM. We introduce for the first time a combined diagnostic approach based on map topology quantification using Kullback-Leibler (KL) entropy and regional magnetic field strength parameters. The cardiac magnetic field was recorded over the anterior chest wall using a multichannel-LT-SQUID system. CMFM was calculated based on a regular 36 point grid. We analyzed CMFM in patients with confirmed diagnosis of HCM (HCM, n =33, 43.8±13 years, 13 women, 20 men), a control group of healthy subjects (NORMAL, n =57, 39.6±8.9 years; 22 women and 35 men), and patients with confirmed cardiac hypertrophy due to arterial hypertension (HYP, n =42, 49.7±7.9 years, 15 women and 27 men). A subgroup analysis was performed between HCM patients suffering from the obstructive (HOCM, n =19) and nonobstructive (HNCM, n =14) form of the disease. KL entropy based map topology quantification alone identified HCM patients with a sensitivity of 78.8% and specificity of 86.9% (overall classification rate 84.8%). The combination of the KL parameters with a regional field strength parameter improved the overall

  20. Stego Optical Encryption Based on Chaotic Baker's Map Transformation

    Science.gov (United States)

    Hussain, Iqtadar; Gondal, Muhammad Asif

    2014-06-01

    In this article, an optical image encryption algorithm based on chaotic baker's map is presented. The stego-image is encrypted with the help of double random phase encoding algorithm and then produced disorder with the help of chaotic transformation. Security test shows that the reading of proposed algorithm is very close to the optimal values.

  1. Optical mapping of release properties in synapses

    Directory of Open Access Journals (Sweden)

    Pablo Ariel

    2010-08-01

    Full Text Available Synapses are important functional units that determine how information flows through the brain. Understanding their biophysical properties and the molecules that underpin them is an important goal of cellular neuroscience. Thus, it is of interest to develop protocols that allow easy measurement of synaptic parameters in model systems that permit molecular manipulations. Here, we used a sensitive and high-time resolution optical approach that allowed us to characterize two functional parameters critical to presynaptic efficacy: vesicle fusion probability (Pv and readily releasable pool size (RRP. We implemented two different approaches to determine the RRP size that were in broad agreement: depletion of the RRP by high frequency stimulation and saturation of the calcium sensor during single action potential stimuli. Our methods are based on reporters that provide a robust, quantitative, purely presynaptic readout and present a new avenue to study molecules that affect synaptic vesicle exocytosis.

  2. Noncontact quantitative biomechanical characterization of cardiac muscle using shear wave imaging optical coherence tomography.

    Science.gov (United States)

    Wang, Shang; Lopez, Andrew L; Morikawa, Yuka; Tao, Ge; Li, Jiasong; Larina, Irina V; Martin, James F; Larin, Kirill V

    2014-07-01

    We report on a quantitative optical elastographic method based on shear wave imaging optical coherence tomography (SWI-OCT) for biomechanical characterization of cardiac muscle through noncontact elasticity measurement. The SWI-OCT system employs a focused air-puff device for localized loading of the cardiac muscle and utilizes phase-sensitive OCT to monitor the induced tissue deformation. Phase information from the optical interferometry is used to reconstruct 2-D depth-resolved shear wave propagation inside the muscle tissue. Cross-correlation of the displacement profiles at various spatial locations in the propagation direction is applied to measure the group velocity of the shear waves, based on which the Young's modulus of tissue is quantified. The quantitative feature and measurement accuracy of this method is demonstrated from the experiments on tissue-mimicking phantoms with the verification using uniaxial compression test. The experiments are performed on ex vivo cardiac muscle tissue from mice with normal and genetically altered myocardium. Our results indicate this optical elastographic technique is useful as a noncontact tool to assist the cardiac muscle studies.

  3. Measuring and mapping cardiac fiber and laminar architecture using diffusion tensor MR imaging.

    Science.gov (United States)

    Helm, Patrick; Beg, Mirza Faisal; Miller, Michael I; Winslow, Raimond L

    2005-06-01

    The ventricular myocardium is known to exhibit a complex spatial organization, with fiber orientation varying as a function of transmural location. It is now well established that diffusion tensor magnetic resonance imaging (DTMRI) may be used to measure this fiber orientation at high spatial resolution. Cardiac fibers are also known to be organized in sheets with surface orientation varying throughout the ventricles. This article reviews results on use of DTMRI for measuring ventricular fiber orientation, as well as presents new results providing strong evidence that the tertiary eigenvector of the diffusion tensor is aligned locally with the cardiac sheet surface normal. Considered together, these data indicate that DTMRI may be used to reconstruct both ventricular fiber and sheet organization. This article also presents the large deformation diffeomorphic metric mapping (LDDMM) algorithm and shows that this algorithm may be used to bring ensembles of imaged and reconstructed hearts into correspondence (e.g., registration) so that variability of ventricular geometry, fiber, and sheet orientation may be quantified. Ventricular geometry and fiber structure is known to be remodeled in a range of disease processes; however, descriptions of this remodeling have remained subjective and qualitative. We anticipate that use of DTMRI for reconstruction of ventricular anatomy coupled with application of the LDDMM method for image volume registration will enable the detection and quantification of changes in cardiac anatomy that are characteristic of specific disease processes in the heart. Finally, we show that epicardial electrical mapping and DTMRI imaging may be performed in the same hearts. The anatomic data may then be used to simulate electrical conduction in a computational model of the very same heart that was mapped electrically. This facilitates direct comparison and testing of model versus experimental results and opens the door to quantitative measurement

  4. Photocurrent mapping of near-field optical antenna resonances.

    Science.gov (United States)

    Barnard, Edward S; Pala, Ragip A; Brongersma, Mark L

    2011-08-21

    An increasing number of photonics applications make use of nanoscale optical antennas that exhibit a strong, resonant interaction with photons of a specific frequency. The resonant properties of such antennas are conventionally characterized by far-field light-scattering techniques. However, many applications require quantitative knowledge of the near-field behaviour, and existing local field measurement techniques provide only relative, rather than absolute, data. Here, we demonstrate a photodetector platform that uses a silicon-on-insulator substrate to spectrally and spatially map the absolute values of enhanced fields near any type of optical antenna by transducing local electric fields into photocurrent. We are able to quantify the resonant optical and materials properties of nanoscale (∼50 nm) and wavelength-scale (∼1 µm) metallic antennas as well as high-refractive-index semiconductor antennas. The data agree well with light-scattering measurements, full-field simulations and intuitive resonator models.

  5. Evaluation of Rigid-Body Motion Compensation in Cardiac Perfusion SPECT Employing Polar-Map Quantification.

    Science.gov (United States)

    Pretorius, P Hendrik; Johnson, Karen L; King, Michael A

    2016-06-01

    We have recently been successful in the development and testing of rigid-body motion tracking, estimation and compensation for cardiac perfusion SPECT based on a visual tracking system (VTS). The goal of this study was to evaluate in patients the effectiveness of our rigid-body motion compensation strategy. Sixty-four patient volunteers were asked to remain motionless or execute some predefined body motion during an additional second stress perfusion acquisition. Acquisitions were performed using the standard clinical protocol with 64 projections acquired through 180 degrees. All data were reconstructed with an ordered-subsets expectation-maximization (OSEM) algorithm using 4 projections per subset and 5 iterations. All physical degradation factors were addressed (attenuation, scatter, and distance dependent resolution), while a 3-dimensional Gaussian rotator was used during reconstruction to correct for six-degree-of-freedom (6-DOF) rigid-body motion estimated by the VTS. Polar map quantification was employed to evaluate compensation techniques. In 54.7% of the uncorrected second stress studies there was a statistically significant difference in the polar maps, and in 45.3% this made a difference in the interpretation of segmental perfusion. Motion correction reduced the impact of motion such that with it 32.8 % of the polar maps were statistically significantly different, and in 14.1% this difference changed the interpretation of segmental perfusion. The improvement shown in polar map quantitation translated to visually improved uniformity of the SPECT slices.

  6. High resolution hybrid optical and acoustic sea floor maps (Invited)

    Science.gov (United States)

    Roman, C.; Inglis, G.

    2013-12-01

    This abstract presents a method for creating hybrid optical and acoustic sea floor reconstructions at centimeter scale grid resolutions with robotic vehicles. Multibeam sonar and stereo vision are two common sensing modalities with complementary strengths that are well suited for data fusion. We have recently developed an automated two stage pipeline to create such maps. The steps can be broken down as navigation refinement and map construction. During navigation refinement a graph-based optimization algorithm is used to align 3D point clouds created with both the multibeam sonar and stereo cameras. The process combats the typical growth in navigation error that has a detrimental affect on map fidelity and typically introduces artifacts at small grid sizes. During this process we are able to automatically register local point clouds created by each sensor to themselves and to each other where they overlap in a survey pattern. The process also estimates the sensor offsets, such as heading, pitch and roll, that describe how each sensor is mounted to the vehicle. The end results of the navigation step is a refined vehicle trajectory that ensures the points clouds from each sensor are consistently aligned, and the individual sensor offsets. In the mapping step, grid cells in the map are selectively populated by choosing data points from each sensor in an automated manner. The selection process is designed to pick points that preserve the best characteristics of each sensor and honor some specific map quality criteria to reduce outliers and ghosting. In general, the algorithm selects dense 3D stereo points in areas of high texture and point density. In areas where the stereo vision is poor, such as in a scene with low contrast or texture, multibeam sonar points are inserted in the map. This process is automated and results in a hybrid map populated with data from both sensors. Additional cross modality checks are made to reject outliers in a robust manner. The final

  7. Live 4D optical coherence tomography for early embryonic mouse cardiac phenotyping

    Science.gov (United States)

    Lopez, Andrew L.; Wang, Shang; Larin, Kirill V.; Overbeek, Paul A.; Larina, Irina V.

    2016-03-01

    Studying embryonic mouse development is important for our understanding of normal human embryogenesis and the underlying causes of congenital defects. Our research focuses on imaging early development in the mouse embryo to specifically understand cardiovascular development using optical coherence tomography (OCT). We have previously developed imaging approaches that combine static embryo culture, OCT imaging and advanced image processing to visualize the whole live mouse embryos and obtain 4D (3D+time) cardiodynamic datasets with cellular resolution. Here, we present the study of using 4D OCT for dynamic imaging of early embryonic heart in live mouse embryos to assess mutant cardiac phenotypes during development, including a cardiac looping defect. Our results indicate that the live 4D OCT imaging approach is an efficient phenotyping tool that can reveal structural and functional cardiac defects at very early stages. Further studies integrating live embryonic cardiodynamic phenotyping with molecular and genetic approaches in mouse mutants will help to elucidate the underlying signaling defects.

  8. Inscribing Optical Excitability to Non-Excitable Cardiac Cells: Viral Delivery of Optogenetic Tools in Primary Cardiac Fibroblasts

    Science.gov (United States)

    Yu, Jinzhu; Entcheva, Emilia

    2016-01-01

    We describe in detail a method to introduce optogenetic actuation tools, a mutant version of channelrhodopsin- 2, ChR2(H134R), and archaerhodopsin (ArchT), into primary cardiac fibroblasts (cFB) in vitro by adenoviral infection to yield quick, robust, and consistent expression. Instructions on adjusting infection parameters such as the multiplicity of infection and virus incubation duration are provided to generalize the method for different lab settings or cell types. Specific conditions are discussed to create hybrid co-cultures of the optogenetically modified cFB and non-transformed cardiomyocytes to obtain light- sensitive excitable cardiac syncytium, including stencil-patterned cell growth. We also describe an all-optical framework for the functional testing of responsiveness of these opsins in cFB. The presented methodology provides cell-specific tools for the mechanistic investigation of the functional bioelectric contribution of different non-excitable cells in the heart and their electrical coupling to cardiomyocytes under different conditions. PMID:26965132

  9. Optimisation of post mortem cardiac computed tomography compared to optical coherence tomography and histopathology - Technical note

    DEFF Research Database (Denmark)

    Precht, Helle; Leth, Peter Mygind; Thygesen, Jesper

    2014-01-01

    Introduction: Coronary atherosclerosis is a leading cause of mortality. New technological developments in computed tomography (CT), including dual energy, iterative reconstructions and high definition scanning, could significantly improve the non-invasive identification of atherosclerosis plaques....... Here, a new method for optimising cardiac coronary CT with optical coherence tomography (OCT) and histopathology is presented. Materials and methods: Twenty human hearts obtained from autopsies were used. A contrast agent that solidifies after cooling was injected into the coronary arteries. CT...

  10. OptoDyCE: Automated system for high-throughput all-optical dynamic cardiac electrophysiology

    Science.gov (United States)

    Klimas, Aleksandra; Yu, Jinzhu; Ambrosi, Christina M.; Williams, John C.; Bien, Harold; Entcheva, Emilia

    2016-02-01

    In the last two decades, drugs withdrawals from the market were due to cardiac toxicity, where unintended interactions with ion channels disrupt the heart's normal electrical function. Consequently, all new drugs must undergo preclinical testing for cardiac liability, adding to an already expensive and lengthy process. Recognition that proarrhythmic effects often result from drug action on multiple ion channels demonstrates a need for integrative and comprehensive measurements. Additionally, patient-specific therapies relying on emerging technologies employing stem-cell derived cardiomyocytes (e.g. induced pluripotent stem-cell-derived cardiomyocytes, iPSC-CMs) require better screening methods to become practical. However, a high-throughput, cost-effective approach for cellular cardiac electrophysiology has not been feasible. Optical techniques for manipulation and recording provide a contactless means of dynamic, high-throughput testing of cells and tissues. Here, we consider the requirements for all-optical electrophysiology for drug testing, and we implement and validate OptoDyCE, a fully automated system for all-optical cardiac electrophysiology. We demonstrate the high-throughput capabilities using multicellular samples in 96-well format by combining optogenetic actuation with simultaneous fast high-resolution optical sensing of voltage or intracellular calcium. The system can also be implemented using iPSC-CMs and other cell-types by delivery of optogenetic drivers, or through the modular use of dedicated light-sensitive somatic cells in conjunction with non-modified cells. OptoDyCE provides a truly modular and dynamic screening system, capable of fully-automated acquisition of high-content information integral for improved discovery and development of new drugs and biologics, as well as providing a means of better understanding of electrical disturbances in the heart.

  11. Autonomous Underwater Navigation and Optical Mapping in Unknown Natural Environments.

    Science.gov (United States)

    Hernández, Juan David; Istenič, Klemen; Gracias, Nuno; Palomeras, Narcís; Campos, Ricard; Vidal, Eduard; García, Rafael; Carreras, Marc

    2016-07-26

    We present an approach for navigating in unknown environments while, simultaneously, gathering information for inspecting underwater structures using an autonomous underwater vehicle (AUV). To accomplish this, we first use our pipeline for mapping and planning collision-free paths online, which endows an AUV with the capability to autonomously acquire optical data in close proximity. With that information, we then propose a reconstruction pipeline to create a photo-realistic textured 3D model of the inspected area. These 3D models are also of particular interest to other fields of study in marine sciences, since they can serve as base maps for environmental monitoring, thus allowing change detection of biological communities and their environment over time. Finally, we evaluate our approach using the Sparus II, a torpedo-shaped AUV, conducting inspection missions in a challenging, real-world and natural scenario.

  12. Autonomous Underwater Navigation and Optical Mapping in Unknown Natural Environments

    Directory of Open Access Journals (Sweden)

    Juan David Hernández

    2016-07-01

    Full Text Available We present an approach for navigating in unknown environments while, simultaneously, gathering information for inspecting underwater structures using an autonomous underwater vehicle (AUV. To accomplish this, we first use our pipeline for mapping and planning collision-free paths online, which endows an AUV with the capability to autonomously acquire optical data in close proximity. With that information, we then propose a reconstruction pipeline to create a photo-realistic textured 3D model of the inspected area. These 3D models are also of particular interest to other fields of study in marine sciences, since they can serve as base maps for environmental monitoring, thus allowing change detection of biological communities and their environment over time. Finally, we evaluate our approach using the Sparus II, a torpedo-shaped AUV, conducting inspection missions in a challenging, real-world and natural scenario.

  13. Autonomous Underwater Navigation and Optical Mapping in Unknown Natural Environments

    Science.gov (United States)

    Hernández, Juan David; Istenič, Klemen; Gracias, Nuno; Palomeras, Narcís; Campos, Ricard; Vidal, Eduard; García, Rafael; Carreras, Marc

    2016-01-01

    We present an approach for navigating in unknown environments while, simultaneously, gathering information for inspecting underwater structures using an autonomous underwater vehicle (AUV). To accomplish this, we first use our pipeline for mapping and planning collision-free paths online, which endows an AUV with the capability to autonomously acquire optical data in close proximity. With that information, we then propose a reconstruction pipeline to create a photo-realistic textured 3D model of the inspected area. These 3D models are also of particular interest to other fields of study in marine sciences, since they can serve as base maps for environmental monitoring, thus allowing change detection of biological communities and their environment over time. Finally, we evaluate our approach using the Sparus II, a torpedo-shaped AUV, conducting inspection missions in a challenging, real-world and natural scenario. PMID:27472337

  14. DeepSurveyCam—A Deep Ocean Optical Mapping System

    Directory of Open Access Journals (Sweden)

    Tom Kwasnitschka

    2016-01-01

    Full Text Available Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor, and the limitations of localization technologies (no GPS. The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor.

  15. DeepSurveyCam--A Deep Ocean Optical Mapping System.

    Science.gov (United States)

    Kwasnitschka, Tom; Köser, Kevin; Sticklus, Jan; Rothenbeck, Marcel; Weiß, Tim; Wenzlaff, Emanuel; Schoening, Timm; Triebe, Lars; Steinführer, Anja; Devey, Colin; Greinert, Jens

    2016-01-28

    Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor), and the limitations of localization technologies (no GPS). The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers) in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor.

  16. DeepSurveyCam—A Deep Ocean Optical Mapping System

    Science.gov (United States)

    Kwasnitschka, Tom; Köser, Kevin; Sticklus, Jan; Rothenbeck, Marcel; Weiß, Tim; Wenzlaff, Emanuel; Schoening, Timm; Triebe, Lars; Steinführer, Anja; Devey, Colin; Greinert, Jens

    2016-01-01

    Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor), and the limitations of localization technologies (no GPS). The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers) in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor. PMID:26828495

  17. Cardiac Fibrosis in Aortic Stenosis and Hypertensive Heart Disease Assessed by Magnetic Resonance T1 Mapping.

    Science.gov (United States)

    von Knobelsdorff-Brenkenhoff, Florian; Mueller, Anna-Katharina; Prothmann, Marcel; Hennig, Pierre; Dieringer, Matthias A; Schmacht, Luisa; Greiser, Andreas; Schulz-Menger, Jeanette

    2016-09-01

    Continuous pressure overload may lead to subclinical myocardial tissue changes in patients with hypertensive heart disease (HHD) and aortic stenosis (AS). The study aim was to detect interstitial fibrosis using quantitative cardiovascular magnetic resonance. Fifteen patients with HHD (arterial hypertension + septal wall thickness ≥13 mm), 33 with AS (eight mild, 15 moderate, 10 severe), and 60 healthy controls were enrolled. Native T1 maps (modified Look-Locker inversion recovery) were obtained in a basal, mid-ventricular, and apical shortaxis slice of the left ventricle to assess cardiac fibrosis. Focal fibrosis was assessed with late gadolinium enhancement (LGE). Patients with HHD and controls did not differ regarding the native myocardial T1 values, both per slice and per segment. In AS patients, apical native T1 values were lower than in controls, and there was a trend towards higher T1 values in the septum in severe AS (1172.6 ± 62.0 ms versus 1152.9 ± 43.9 ms). Five HHD patients and 11 AS patients had non-ischemic fibrosis in LGE images. Native T1 times did not differ between LGE-positive and LGEnegative groups (both with inclusion and exclusion of segments with LGE). T1 mapping did not reveal any evidence of abnormal interstitial fibrosis in HHD subjects with mild hypertrophy. In severe AS, a trend towards more interstitial fibrosis was present, but absolute differences were small for decision making.

  18. Mapping neurogenesis onset in the optic tectum of Xenopus laevis

    Science.gov (United States)

    Herrgen, Leah; Akerman, Colin J.

    2016-01-01

    Neural progenitor cells have a central role in the development and evolution of the vertebrate brain. During early brain development, neural progenitors first expand their numbers through repeated proliferative divisions and then begin to exhibit neurogenic divisions. The transparent and experimentally accessible optic tectum of Xenopus laevis is an excellent model system for the study of the cell biology of neurogenesis, but the precise spatial and temporal relationship between proliferative and neurogenic progenitors has not been explored in this system. Here we construct a spatial map of proliferative and neurogenic divisions through lineage tracing of individual progenitors and their progeny. We find a clear spatial separation of proliferative and neurogenic progenitors along the anterior-posterior axis of the optic tectum, with proliferative progenitors located more posteriorly and neurogenic progenitors located more anteriorly. Since individual progenitors are repositioned toward more anterior locations as they mature, this spatial separation likely reflects an increased restriction in the proliferative potential of individual progenitors. We then examined whether the transition from proliferative to neurogenic behavior correlates with cellular properties that have previously been implicated in regulating neurogenesis onset. Our data reveal that the transition from proliferation to neurogenesis is associated with a small change in cleavage plane orientation and a more pronounced change in cell cycle kinetics in a manner reminiscent of observations from mammalian systems. Our findings highlight the potential to use the optic tectum of Xenopus laevis as an accessible system for the study of the cell biology of neurogenesis. PMID:27358457

  19. Photocurrent mapping of near-field optical antenna resonances

    KAUST Repository

    Barnard, Edward S.

    2011-08-21

    An increasing number of photonics applications make use of nanoscale optical antennas that exhibit a strong, resonant interaction with photons of a specific frequency. The resonant properties of such antennas are conventionally characterized by far-field light-scattering techniques. However, many applications require quantitative knowledge of the near-field behaviour, and existing local field measurement techniques provide only relative, rather than absolute, data. Here, we demonstrate a photodetector platform that uses a silicon-on-insulator substrate to spectrally and spatially map the absolute values of enhanced fields near any type of optical antenna by transducing local electric fields into photocurrent. We are able to quantify the resonant optical and materials properties of nanoscale (∼50nm) and wavelength-scale (∼1μm) metallic antennas as well as high-refractive-index semiconductor antennas. The data agree well with light-scattering measurements, full-field simulations and intuitive resonator models. © 2011 Macmillan Publishers Limited. All rights reserved.

  20. Efficient Topology Estimation for Large Scale Optical Mapping

    CERN Document Server

    Elibol, Armagan; Garcia, Rafael

    2013-01-01

    Large scale optical mapping methods are in great demand among scientists who study different aspects of the seabed, and have been fostered by impressive advances in the capabilities of underwater robots in gathering optical data from the seafloor. Cost and weight constraints mean that low-cost ROVs usually have a very limited number of sensors. When a low-cost robot carries out a seafloor survey using a down-looking camera, it usually follows a predefined trajectory that provides several non time-consecutive overlapping image pairs. Finding these pairs (a process known as topology estimation) is indispensable to obtaining globally consistent mosaics and accurate trajectory estimates, which are necessary for a global view of the surveyed area, especially when optical sensors are the only data source. This book contributes to the state-of-art in large area image mosaicing methods for underwater surveys using low-cost vehicles equipped with a very limited sensor suite. The main focus has been on global alignment...

  1. Reverberation Mapping of Optical Emission Lines in Five Active Galaxies

    CERN Document Server

    Fausnaugh, M M; Bentz, M C; Denney, K D; De Rosa, G; Peterson, B M; Kochanek, C S; Pogge, R W; Adams, S M; Barth, A J; Beatty, Thomas G; Bhattacharjee, A; Borman, G A; Boroson, T A; Bottorff, M C; Brown, Jacob E; Brown, Jonathan S; Brotherton, M S; Coker, C T; Crawford, S M; Croxall, K V; Eftekharzadeh, Sarah; Eracleous, Michael; Joner, M D; Henderson, C B; Holoien, T W -S; Horne, Keith; Hutchison, T; Kaspi, Shai; Kim, S; King, Anthea L; Li, Miao; Lochhaas, Cassandra; Ma, Zhiyuan; MacInnis, F; Manne-Nicholas, E R; Mason, M; Montuori, Carmen; Mosquera, Ana; Mudd, Dale; Musso, R; Nazarov, S V; Nguyen, M L; Okhmat, D N; Onken, Christopher A; Ou-Yang, B; Pancoast, A; Pei, L; Penny, Matthew T; Poleski, Radoslaw; Rafter, Stephen; Romero-Colmenero, E; Runnoe, Jessie; Sand, David J; Schimoia, Jaderson S; Sergeev, S G; Shappee, B J; Simonian, Gregory V; Somers, Garrett; Spencer, M; Starkey, D; Stevens, Daniel J; Tayar, Jamie; Treu, T; Valenti, Stefano; Van Saders, J; Villanueva, S; Villforth, C; Weiss, Yaniv; Winkler, H; Zhu, W

    2016-01-01

    We present the first results from an optical reverberation mapping campaign executed in 2014, targeting the active galactic nuclei (AGN) MCG+08-11-011, NGC 2617, NGC 4051, 3C 382, and Mrk 374. Our targets have diverse and interesting observational properties, including a "changing look" AGN and a broad-line radio galaxy. Based on continuum-H$\\beta$ lags, we measure black hole masses for all five targets. We also obtain H$\\gamma$ and He{\\sc ii}\\,$\\lambda 4686$ lags for all objects except 3C 382. The He{\\sc ii}\\,$\\lambda 4686$ lags indicate radial stratification of the BLR, and the masses derived from different emission lines are in general agreement. The relative responsivities of these lines are also in qualitative agreement with photoionization models. These spectra have extremely high signal-to-noise ratios (100--300 per pixel) and there are excellent prospects for obtaining velocity-resolved reverberation signatures.

  2. Real time assessment of RF cardiac tissue ablation with optical spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Demos, S G; Sharareh, S

    2008-03-20

    An optical spectroscopy approach is demonstrated allowing for critical parameters during RF ablation of cardiac tissue to be evaluated in real time. The method is based on incorporating in a typical ablation catheter transmitting and receiving fibers that terminate at the tip of the catheter. By analyzing the spectral characteristics of the NIR diffusely reflected light, information is obtained on such parameters as, catheter-tissue proximity, lesion formation, depth of penetration of the lesion, formation of char during the ablation, formation of coagulum around the ablation site, differentiation of ablated from healthy tissue, and recognition of micro-bubble formation in the tissue.

  3. Field programmable gate array-based real-time optical Doppler tomography system for in vivo imaging of cardiac dynamics in the chick embryo

    DEFF Research Database (Denmark)

    Thrane, Lars; Larsen, Henning Engelbrecht; Norozi, Kambiz

    2009-01-01

    We demonstrate a field programmable gate-array-based real-time optical Doppler tomography system. A complex-valued bandpass filter is used for the first time in optical coherence tomography signal processing to create the analytic signal. This method simplifies the filter design, and allows...... efficient and compact implementation by combining the conversion to an analytic signal with a pulse shaping function without the need for extra resources as compared to the Hilbert transform method. The conversion of the analytic signal to amplitude and phase is done by use of the coordinate rotation...... digital computer (CORDIC) algorithm, which is an efficient algorithm that maps well to the field programmable gate array. Flow phantom experiments, and the use of this system for in vivo imaging of cardiac dynamics in the chick embryo, are presented. We demonstrate the visualization of blood flow...

  4. A preprocessing tool for removing artifact from cardiac RR interval recordings using three-dimensional spatial distribution mapping.

    Science.gov (United States)

    Stapelberg, Nicolas J C; Neumann, David L; Shum, David H K; McConnell, Harry; Hamilton-Craig, Ian

    2016-04-01

    Artifact is common in cardiac RR interval data that is recorded for heart rate variability (HRV) analysis. A novel algorithm for artifact detection and interpolation in RR interval data is described. It is based on spatial distribution mapping of RR interval magnitude and relationships to adjacent values in three dimensions. The characteristics of normal physiological RR intervals and artifact intervals were established using 24-h recordings from 20 technician-assessed human cardiac recordings. The algorithm was incorporated into a preprocessing tool and validated using 30 artificial RR (ARR) interval data files, to which known quantities of artifact (0.5%, 1%, 2%, 3%, 5%, 7%, 10%) were added. The impact of preprocessing ARR files with 1% added artifact was also assessed using 10 time domain and frequency domain HRV metrics. The preprocessing tool was also used to preprocess 69 24-h human cardiac recordings. The tool was able to remove artifact from technician-assessed human cardiac recordings (sensitivity 0.84, SD = 0.09, specificity of 1.00, SD = 0.01) and artificial data files. The removal of artifact had a low impact on time domain and frequency domain HRV metrics (ranging from 0% to 2.5% change in values). This novel preprocessing tool can be used with human 24-h cardiac recordings to remove artifact while minimally affecting physiological data and therefore having a low impact on HRV measures of that data.

  5. Optical recording of calcium currents during impulse conduction in cardiac tissue.

    Science.gov (United States)

    Jousset, Florian; Rohr, Stephan

    2015-04-01

    We explore the feasibility of obtaining a spatially resolved picture of [Formula: see text] inward currents ([Formula: see text]) in multicellular cardiac tissue by differentiating optically recorded [Formula: see text] transients that accompany propagating action potentials. Patterned growth strands of neonatal rat ventricular cardiomyocytes were stained with the [Formula: see text] indicators Fluo-4 or Fluo-4FF. Preparations were stimulated at 1 Hz, and [Formula: see text] transients were recorded with high spatiotemporal resolution ([Formula: see text], 2 kHz analog bandwidth) with a photodiode array. Signals were differentiated after appropriate digital filtering. Differentiation of [Formula: see text] transients resulted in optically recorded calcium currents (ORCCs) that carried the temporal and pharmacological signatures of L-type [Formula: see text] inward currents: the time to peak amounted to [Formula: see text] (Fluo-4FF) and [Formula: see text] (Fluo-4), full-width at half-maximum was [Formula: see text], and ORCCs were completely suppressed by [Formula: see text][Formula: see text]. Also, and as reported before from patch-clamp studies, caffeine reversibly depressed the amplitude of ORCCs. The results demonstrate that the differentiation of [Formula: see text] transients can be used to obtain a spatially resolved picture of the initial phase of [Formula: see text] in cardiac tissue and to assess relative changes of activation/fast inactivation of [Formula: see text] following pharmacological interventions.

  6. Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line.

    Science.gov (United States)

    Teo, Audrey S M; Verzotto, Davide; Yao, Fei; Nagarajan, Niranjan; Hillmer, Axel M

    2015-01-01

    Next-generation sequencing (NGS) technologies have changed our understanding of the variability of the human genome. However, the identification of genome structural variations based on NGS approaches with read lengths of 35-300 bases remains a challenge. Single-molecule optical mapping technologies allow the analysis of DNA molecules of up to 2 Mb and as such are suitable for the identification of large-scale genome structural variations, and for de novo genome assemblies when combined with short-read NGS data. Here we present optical mapping data for two human genomes: the HapMap cell line GM12878 and the colorectal cancer cell line HCT116. High molecular weight DNA was obtained by embedding GM12878 and HCT116 cells, respectively, in agarose plugs, followed by DNA extraction under mild conditions. Genomic DNA was digested with KpnI and 310,000 and 296,000 DNA molecules (≥ 150 kb and 10 restriction fragments), respectively, were analyzed per cell line using the Argus optical mapping system. Maps were aligned to the human reference by OPTIMA, a new glocal alignment method. Genome coverage of 6.8× and 5.7× was obtained, respectively; 2.9× and 1.7× more than the coverage obtained with previously available software. Optical mapping allows the resolution of large-scale structural variations of the genome, and the scaffold extension of NGS-based de novo assemblies. OPTIMA is an efficient new alignment method; our optical mapping data provide a resource for genome structure analyses of the human HapMap reference cell line GM12878, and the colorectal cancer cell line HCT116.

  7. Optical mammography: bilateral breast symmetry in hemoglobin saturation maps

    Science.gov (United States)

    Anderson, Pamela G.; Sassaroli, Angelo; Kainerstorfer, Jana M.; Krishnamurthy, Nishanth; Kalli, Sirishma; Makim, Shital S.; Graham, Roger A.; Fantini, Sergio

    2016-10-01

    We present a study of the bilateral symmetry of human breast hemoglobin saturation maps measured with a broadband optical mammography instrument. We have imaged 21 patients with unilateral breast cancer, 32 patients with unilateral benign lesions, and 27 healthy patients. An image registration process was applied to the bilateral hemoglobin saturation (SO2) images by assigning each pixel to the low, middle, or high range of SO2 values, where the thresholds for the categories were the 15th and 85th percentiles of the individual saturation range. The Dice coefficient, which is a measure of similarity, was calculated for each patient's pair of right and left breast SO2 images. The invasive cancer patients were found to have an average Dice coefficient value of 0.55±0.07, which was significantly lower than the benign and healthy groups (0.61±0.11 and 0.62±0.12, respectively). Although differences were seen in a group analysis, the healthy patient Dice coefficients spanned a wide range, limiting the diagnostic capabilities of this SO2 symmetry analysis on an individual basis. Our results suggest that for assessing the SO2 contrast of breast lesions, it may be better to select a reference tissue in the ipsilateral rather than the contralateral breast.

  8. Sensitivity and Specificity of Cardiac Tissue Discrimination Using Fiber-Optics Confocal Microscopy.

    Science.gov (United States)

    Huang, Chao; Sachse, Frank B; Hitchcock, Robert W; Kaza, Aditya K

    2016-01-01

    Disturbances of the cardiac conduction system constitute a major risk after surgical repair of complex cases of congenital heart disease. Intraoperative identification of the conduction system may reduce the incidence of these disturbances. We previously developed an approach to identify cardiac tissue types using fiber-optics confocal microscopy and extracellular fluorophores. Here, we applied this approach to investigate sensitivity and specificity of human and automated classification in discriminating images of atrial working myocardium and specialized tissue of the conduction system. Two-dimensional image sequences from atrial working myocardium and nodal tissue of isolated perfused rodent hearts were acquired using a fiber-optics confocal microscope (Leica FCM1000). We compared two methods for local application of extracellular fluorophores: topical via pipette and with a dye carrier. Eight blinded examiners evaluated 162 randomly selected images of atrial working myocardium (n = 81) and nodal tissue (n = 81). In addition, we evaluated the images using automated classification. Blinded examiners achieved a sensitivity and specificity of 99.2 ± 0.3% and 98.0 ± 0.7%, respectively, with the dye carrier method of dye application. Sensitivity and specificity was similar for dye application via a pipette (99.2 ± 0.3% and 94.0 ± 2.4%, respectively). Sensitivity and specificity for automated methods of tissue discrimination were similarly high. Human and automated classification achieved high sensitivity and specificity in discriminating atrial working myocardium and nodal tissue. We suggest that our findings facilitate clinical translation of fiber-optics confocal microscopy as an intraoperative imaging modality to reduce the incidence of conduction disturbances during surgical correction of congenital heart disease.

  9. Sensitivity and Specificity of Cardiac Tissue Discrimination Using Fiber-Optics Confocal Microscopy

    Science.gov (United States)

    Huang, Chao; Sachse, Frank B.; Hitchcock, Robert W.; Kaza, Aditya K.

    2016-01-01

    Disturbances of the cardiac conduction system constitute a major risk after surgical repair of complex cases of congenital heart disease. Intraoperative identification of the conduction system may reduce the incidence of these disturbances. We previously developed an approach to identify cardiac tissue types using fiber-optics confocal microscopy and extracellular fluorophores. Here, we applied this approach to investigate sensitivity and specificity of human and automated classification in discriminating images of atrial working myocardium and specialized tissue of the conduction system. Two-dimensional image sequences from atrial working myocardium and nodal tissue of isolated perfused rodent hearts were acquired using a fiber-optics confocal microscope (Leica FCM1000). We compared two methods for local application of extracellular fluorophores: topical via pipette and with a dye carrier. Eight blinded examiners evaluated 162 randomly selected images of atrial working myocardium (n = 81) and nodal tissue (n = 81). In addition, we evaluated the images using automated classification. Blinded examiners achieved a sensitivity and specificity of 99.2±0.3% and 98.0±0.7%, respectively, with the dye carrier method of dye application. Sensitivity and specificity was similar for dye application via a pipette (99.2±0.3% and 94.0±2.4%, respectively). Sensitivity and specificity for automated methods of tissue discrimination were similarly high. Human and automated classification achieved high sensitivity and specificity in discriminating atrial working myocardium and nodal tissue. We suggest that our findings facilitate clinical translation of fiber-optics confocal microscopy as an intraoperative imaging modality to reduce the incidence of conduction disturbances during surgical correction of congenital heart disease. PMID:26808149

  10. Sensitivity and Specificity of Cardiac Tissue Discrimination Using Fiber-Optics Confocal Microscopy.

    Directory of Open Access Journals (Sweden)

    Chao Huang

    Full Text Available Disturbances of the cardiac conduction system constitute a major risk after surgical repair of complex cases of congenital heart disease. Intraoperative identification of the conduction system may reduce the incidence of these disturbances. We previously developed an approach to identify cardiac tissue types using fiber-optics confocal microscopy and extracellular fluorophores. Here, we applied this approach to investigate sensitivity and specificity of human and automated classification in discriminating images of atrial working myocardium and specialized tissue of the conduction system. Two-dimensional image sequences from atrial working myocardium and nodal tissue of isolated perfused rodent hearts were acquired using a fiber-optics confocal microscope (Leica FCM1000. We compared two methods for local application of extracellular fluorophores: topical via pipette and with a dye carrier. Eight blinded examiners evaluated 162 randomly selected images of atrial working myocardium (n = 81 and nodal tissue (n = 81. In addition, we evaluated the images using automated classification. Blinded examiners achieved a sensitivity and specificity of 99.2 ± 0.3% and 98.0 ± 0.7%, respectively, with the dye carrier method of dye application. Sensitivity and specificity was similar for dye application via a pipette (99.2 ± 0.3% and 94.0 ± 2.4%, respectively. Sensitivity and specificity for automated methods of tissue discrimination were similarly high. Human and automated classification achieved high sensitivity and specificity in discriminating atrial working myocardium and nodal tissue. We suggest that our findings facilitate clinical translation of fiber-optics confocal microscopy as an intraoperative imaging modality to reduce the incidence of conduction disturbances during surgical correction of congenital heart disease.

  11. Construction and use of a zebrafish heart voltage and calcium optical mapping system, with integrated electrocardiogram and programmable electrical stimulation.

    Science.gov (United States)

    Lin, Eric; Craig, Calvin; Lamothe, Marcel; Sarunic, Marinko V; Beg, Mirza Faisal; Tibbits, Glen F

    2015-05-01

    Zebrafish are increasingly being used as a model of vertebrate cardiology due to mammalian-like cardiac properties in many respects. The size and fecundity of zebrafish make them suitable for large-scale genetic and pharmacological screening. In larger mammalian hearts, optical mapping is often used to investigate the interplay between voltage and calcium dynamics and to investigate their respective roles in arrhythmogenesis. This report outlines the construction of an optical mapping system for use with zebrafish hearts, using the voltage-sensitive dye RH 237 and the calcium indicator dye Rhod-2 using two industrial-level CCD cameras. With the use of economical cameras and a common 532-nm diode laser for excitation, the rate dependence of voltage and calcium dynamics within the atrial and ventricular compartments can be simultaneously determined. At 140 beats/min, the atrial action potential duration was 36 ms and the transient duration was 53 ms. With the use of a programmable electrical stimulator, a shallow rate dependence of 3 and 4 ms per 100 beats/min was observed, respectively. In the ventricle the action potential duration was 109 ms and the transient duration was 124 ms, with a steeper rate dependence of 12 and 16 ms per 100 beats/min. Synchronous electrocardiograms and optical mapping recordings were recorded, in which the P-wave aligns with the atrial voltage peak and R-wave aligns with the ventricular peak. A simple optical pathway and imaging chamber are detailed along with schematics for the in-house construction of the electrocardiogram amplifier and electrical stimulator. Laboratory procedures necessary for zebrafish heart isolation, cannulation, and loading are also presented.

  12. Diffuse myocardial fibrosis following tetralogy of Fallot repair: a T1 mapping cardiac magnetic resonance study

    Energy Technology Data Exchange (ETDEWEB)

    Kozak, Marcelo F.; Yoo, Shi-Joon; Seed, Mike; Grosse-Wortmann, Lars [The Hospital for Sick Children, University of Toronto, Labatt Family Heart Centre in the Department of Paediatrics and Department of Diagnostic Imaging, Toronto (Canada); Redington, Andrew [The Hospital for Sick Children, University of Toronto, Labatt Family Heart Centre in the Department of Paediatrics, Toronto (Canada); Greiser, Andreas [Siemens AG Healthcare Sector, Erlangen (Germany)

    2014-04-15

    Adverse ventricular remodeling after tetralogy of Fallot (TOF) repair is associated with diffuse myocardial fibrosis. The goal of this study was to measure post-contrast myocardial T1 in pediatric patients after TOF repair as surrogates of myocardial fibrosis. Children after TOF repair who underwent cardiac magnetic resonance imaging with T1 mapping using the modified look-locker inversion recovery (MOLLI) sequence were included. In addition to routine volumetric and flow data, we measured post-contrast T1 values of the basal interventricular septum, the left ventricular (LV) lateral wall, and the inferior and anterior walls of the right ventricle (RV). Results were compared to data from age-matched healthy controls. The scans of 18 children who had undergone TOF repair and 12 healthy children were included. Post-contrast T1 values of the left ventricular lateral wall (443 ± 54 vs. 510 ± 77 ms, P = 0.0168) and of the right ventricular anterior wall (333 ± 62 vs. 392 ± 72 ms, P = 0.0423) were significantly shorter in children with TOF repair than in controls, suggesting a higher degree of fibrosis. In children with TOF repair, but not in controls, post-contrast T1 values were shorter in the right ventricle than the left ventricle and shorter in the anterior wall of the right ventricle than in the inferior segments. In the TOF group, post-contrast T1 values of the RV anterior wall correlated with the RV end-systolic volume indexed to body surface area (r = 0.54; r{sup 2} = 0.30; P = 0.0238). In children who underwent tetralogy of Fallot repair the myocardium of both ventricles appears to bear an abnormally high fibrosis burden. (orig.)

  13. Bio-Optical Instrumentation for Mapping of the Upper Ocean Using SeaSoar

    Science.gov (United States)

    1998-01-01

    The implementation of an integrated physical/ bio -optical SeaSoar system provides the ability to obtain highly resolved spatial maps of the...variability of inherent bio -optical properties within the context of detailed physical structure and dynamics. This capability is important for: (1) Examining...the interaction between physical and bio -optical responses of the upper ocean to atmospheric forcing. (2) Observing the details of bio -optical

  14. A technical review of optical mapping of intracellular calcium within myocardial tissue.

    Science.gov (United States)

    Jaimes, Rafael; Walton, Richard D; Pasdois, Philippe; Bernus, Olivier; Efimov, Igor R; Kay, Matthew W

    2016-06-01

    Optical mapping of Ca(2+)-sensitive fluorescence probes has become an extremely useful approach and adopted by many cardiovascular research laboratories to study a spectrum of myocardial physiology and disease conditions. Optical mapping data are often displayed as detailed pseudocolor images, providing unique insight for interpreting mechanisms of ectopic activity, action potential and Ca(2+) transient alternans, tachycardia, and fibrillation. Ca(2+)-sensitive fluorescent probes and optical mapping systems continue to evolve in the ongoing effort to improve therapies that ease the growing worldwide burden of cardiovascular disease. In this technical review we provide an updated overview of conventional approaches for optical mapping of Cai (2+) within intact myocardium. In doing so, a brief history of Cai (2+) probes is provided, and nonratiometric and ratiometric Ca(2+) probes are discussed, including probes for imaging sarcoplasmic reticulum Ca(2+) and probes compatible with potentiometric dyes for dual optical mapping. Typical measurements derived from optical Cai (2+) signals are explained, and the analytics used to compute them are presented. Last, recent studies using Cai (2+) optical mapping to study arrhythmias, heart failure, and metabolic perturbations are summarized.

  15. Cardiac shear-wave elastography using a transesophageal transducer: application to the mapping of thermal lesions in ultrasound transesophageal cardiac ablation.

    Science.gov (United States)

    Kwiecinski, Wojciech; Bessière, Francis; Colas, Elodie Constanciel; N'Djin, W Apoutou; Tanter, Mickaël; Lafon, Cyril; Pernot, Mathieu

    2015-10-21

    Heart rhythm disorders, such as atrial fibrillation or ventricular tachycardia can be treated by catheter-based thermal ablation. However, clinically available systems based on radio-frequency or cryothermal ablation suffer from limited energy penetration and the lack of lesion's extent monitoring. An ultrasound-guided transesophageal device has recently successfully been used to perform High-Intensity Focused Ultrasound (HIFU) ablation in targeted regions of the heart in vivo. In this study we investigate the feasibility of a dual therapy and imaging approach on the same transesophageal device. We demonstrate in vivo that quantitative cardiac shear-wave elastography (SWE) can be performed with the device and we show on ex vivo samples that transesophageal SWE can map the extent of the HIFU lesions. First, SWE was validated with the transesophageal endoscope in one sheep in vivo. The stiffness of normal atrial and ventricular tissues has been assessed during the cardiac cycle (n = 11) and mapped (n = 7). Second, HIFU ablation has been performed with the therapy-imaging transesophageal device in ex vivo chicken breast samples (n  =  3), then atrial (left, n = 2) and ventricular (left n = 1, right n = 1) porcine heart tissues. SWE provided stiffness maps of the tissues before and after ablation. Areas of the lesions were obtained by tissue color change with gross pathology and compared to SWE. During the cardiac cycle stiffness varied from 0.5   ±   0.1 kPa to 6.0   ±   0.3 kPa in the atrium and from 1.3   ±   0.3 kPa to 13.5   ±   9.1 kPa in the ventricles. The thermal lesions were visible on all SWE maps performed after ablation. Shear modulus of the ablated zones increased to 16.3   ±   5.5 kPa (versus 4.4   ±   1.6 kPa before ablation) in the chicken breast, to 30.3   ±   10.3 kPa (versus 12.2   ±   4.3 kPa) in the atria and to 73.8

  16. Cardiac Fibroblast-Specific Activating Transcription Factor 3 Protects Against Heart Failure by Suppressing MAP2K3-p38 Signaling.

    Science.gov (United States)

    Li, Yulin; Li, Zhenya; Zhang, Congcong; Li, Ping; Wu, Yina; Wang, Chunxiao; Lau, Wayne Bond; Ma, Xin-Liang; Du, Jie

    2017-03-01

    Background -Hypertensive ventricular remodeling is a common cause of heart failure. However, the molecular mechanisms regulating ventricular remodeling remain poorly understood. Methods -We used a discovery-driven/nonbiased approach to indentify increased ATF3 expression in hypertensive heart. We employed loss/gain of function approaches to understand the role of ATF3 in heart failure. We also examine the mechanisms through transcriptome, CHIP-seq analysis and in vivo and vitro experiments. Results -ATF3 expression increased in murine hypertensive heart and human hypertrophic heart. Cardiac fibroblast cells are the primary cell type expressing high ATF3 levels in response to hypertensive stimuli. ATF3 knockout (ATF3KO) markedly exaggerated hypertensive ventricular remodeling, a state rescued by lentivirus-mediated/miRNA-aided cardiac fibroblast-selective ATF3 overexpression. Conversely, conditional cardiac fibroblast cell-specific ATF3 transgenic overexpression significantly ameliorated ventricular remodeling and heart failure. We identified Map2K3 as a novel ATF3 target. ATF3 binds with the Map2K3 promoter, recruiting HDAC1, resulting in Map2K3 gene-associated histone deacetylation, thereby inhibiting Map2K3 expression. Genetic Map2K3 knockdown rescued the pro-fibrotic/hypertrophic phenotype in ATF3KO cells. Finally, we demonstrated that p38 is the downstream molecule of Map2K3 mediating the pro-fibrotic/hypertrophic effects in ATF3KO animals. Inhibition of p38 signaling reduced TGF-β signaling-related pro-fibrotic and hypertrophic gene expression, and blocked exaggerated cardiac remodeling in ATF3KO cells. Conclusions -Our study provides the first evidence that ATF3 upregulation in cardiac fibroblasts in response to hypertensive stimuli protects heart by suppressing Map2K3 expression and subsequent p38-TGF-β signaling. These results suggest that positive modulation of cardiac fibroblast ATF3 may represent a novel therapeutic approach against hypertensive

  17. Using a Combined Platform of Swarm Intelligence Algorithms and GIS to Provide Land Suitability Maps for Locating Cardiac Rehabilitation Defibrillators

    Directory of Open Access Journals (Sweden)

    Neda KAFFASH-CHARANDABI

    2015-10-01

    Full Text Available Background: Cardiac arrest is a condition in which the heart is completely stopped and is not pumping any blood. Although most cardiac arrest cases are reported from homes or hospitals, about 20% occur in public areas. Therefore, these areas need to be investigated in terms of cardiac arrest incidence so that places of high incidence can be identi-fied and cardiac rehabilitation defibrillators installed there.Methods: In order to investigate a study area in Petersburg, Pennsylvania State, and to determine appropriate places for installing defibrillators with 5-year period data, swarm intelligence algorithms were used. Moreover, the location of the defibrillators was determined based on the following five evaluation criteria: land use, altitude of the area, econom-ic conditions, distance from hospitals and approximate areas of reported cases of cardiac arrest for public places that were created in geospatial information system (GIS.Results: The A-P HADEL algorithm results were more precise about 27.36%. The validation results indicated a wider coverage of real values and the verification results confirmed the faster and more exact optimization of the cost func-tion in the PSO method.Conclusion: The study findings emphasize the necessity of applying optimal optimization methods along with GIS and precise selection of criteria in the selection of optimal locations for installing medical facilities because the selected algorithm and criteria dramatically affect the final responses. Meanwhile, providing land suitability maps for installing facilities across hot and risky spots has the potential to save many lives.

  18. Non-contact left ventricular endocardial mapping in cardiac resynchronisation therapy

    OpenAIRE

    Lambiase, P. D.; Rinaldi, A.; J. Hauck; Mobb, M; Elliott, D; Mohammad, S; Gill, J. S.; Bucknall, C A

    2004-01-01

    Background: Up to 30% of patients with heart failure do not respond to cardiac resynchronisation therapy (CRT). This may reflect placement of the coronary sinus lead in regions of slow conduction despite optimal positioning on current criteria.

  19. Ventricular filling slows epicardial conduction and increases action potential duration in an optical mapping study of the isolated rabbit heart

    Science.gov (United States)

    Sung, Derrick; Mills, Robert W.; Schettler, Jan; Narayan, Sanjiv M.; Omens, Jeffrey H.; McCulloch, Andrew D.; McCullough, A. D. (Principal Investigator)

    2003-01-01

    INTRODUCTION: Mechanical stimulation can induce electrophysiologic changes in cardiac myocytes, but how mechanoelectric feedback in the intact heart affects action potential propagation remains unclear. METHODS AND RESULTS: Changes in action potential propagation and repolarization with increased left ventricular end-diastolic pressure from 0 to 30 mmHg were investigated using optical mapping in isolated perfused rabbit hearts. With respect to 0 mmHg, epicardial strain at 30 mmHg in the anterior left ventricle averaged 0.040 +/- 0.004 in the muscle fiber direction and 0.032 +/- 0.006 in the cross-fiber direction. An increase in ventricular loading increased average epicardial activation time by 25%+/- 3% (P myocardial perfusion or the presence of an electromechanical decoupling agent (butanedione monoxime) during optical mapping. CONCLUSION: Acute loading of the left ventricle of the isolated rabbit heart decreased apparent epicardial conduction velocity and increased action potential duration by a load-dependent mechanism that may not involve stretch-activated channels.

  20. Non-invasively measured cardiac magnetic field maps improve the estimation of the current distribution

    OpenAIRE

    Kosch, Olaf; Steinhoff, Uwe; Trahms, Lutz; Trontelj, Zvonko; Jazbinšek, Vojko

    2015-01-01

    Comprehensive body surface potential mapping (BSPM) and magnetic field mapping (MFM) measurements have been carried out in order to improve the estimation of the current distribution generated by the human heart. Electric and magnetic fields and also the planar gradient of the magnetic field during the QRS complex were imaged as a time series of field maps. A model of the current distribution should explain the features of both BSPM and MFM. Simulated maps generated by a single dipole or a st...

  1. Three-dimensional electroanatomic mapping of the coronary veins during cardiac resynchronization therapy implant: feasibility and possible applications.

    Science.gov (United States)

    Niazi, Imran; Ryu, Kyungmoo; Hood, Richard; Choudhuri, Indrajit; Akhtar, Masood

    2014-11-01

    Left ventricular (LV) electrical activation pattern could determine optimal LV lead placement site during cardiac resynchronization therapy (CRT) device implant. We sought to determine the feasibility of using EnSite NavX™ electroanatomic mapping system (St. Jude Medical Inc., St. Paul, MN) to assess LV electrical activation during CRT implant. Patients (n = 32; NYHA III, LVEF 120 ms) underwent NavX™ mapping during CRT implant. Left bundle branch block (LBBB) was present during sinus rhythm in group A (n = 17), whereas LBBB was induced by permanent RV apical pacing in group B (n = 15). Following coronary sinus (CS) cannulation, a coil tip 0.014-in. guidewire was introduced into all available CS branches as a mapping electrode. Each patient's unipolar activation map was successfully constructed within 10 min, using the onset of surface QRS as reference. LV activation patterns were complex and varied in both groups. Earliest activation was usually apical, but latest activation was more heterogenous. The lateral or posterolateral branches were the sites of latest activation in 47% of group A and 73% of group B. An LV lead positioned conventionally by a physician blinded to the mapping data was concordant with the latest activated segment in 18% of group A and none of group B patients. Electroanatomic mapping of the CS tributaries is feasible and clinically practicable. Mapping revealed heterogenous conduction patterns that vary between patients in each group and between groups. An LV lead empirically placed in a lateral branch rarely paces the optimal, latest activated vein segment.

  2. Optogenetic Light Crafting Tools for the Control of Cardiac Arrhythmias.

    Science.gov (United States)

    Richter, Claudia; Christoph, Jan; Lehnart, Stephan E; Luther, Stefan

    2016-01-01

    The control of spatiotemporal dynamics in biological systems is a fundamental problem in nonlinear sciences and has important applications in engineering and medicine. Optogenetic tools combined with advanced optical technologies provide unique opportunities to develop and validate novel approaches to control spatiotemporal complexity in neuronal and cardiac systems. Understanding of the mechanisms and instabilities underlying the onset, perpetuation, and control of cardiac arrhythmias will enable the development and translation of novel therapeutic approaches. Here we describe in detail the preparation and optical mapping of transgenic channelrhodopsin-2 (ChR2) mouse hearts, cardiac cell cultures, and the optical setup for photostimulation using digital light processing.

  3. Non-invasive optical mapping of the piglet brain in real time

    Science.gov (United States)

    Fantini, Sergio; Franceschini, Maria Angela; Gratton, Enrico; Hueber, Dennis; Rosenfeld, Warren; Maulik, Dev; Stubblefield, Phillip; Stankovic, Mikjan

    1999-04-01

    We have performed non-invasive, real-time optical mapping of the piglet brain during a subcortical injection of autologous blood. The time resolution of the optical maps is 192 ms, thus allowing us to generate a real-time video of the growing subcortical hematoma. The increased absorption at the site of blood injection is accompanied by a decreased absorption at the contralateral brain side. This contralateral decrease in the optical absorption and the corresponding time traces of the cerebral hemoglobin parameters are consistent with a reduced cerebral blood flow caused by the increased intracranial pressure.

  4. Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.

    Science.gov (United States)

    Shearer, Lindsay A; Anderson, Lorinda K; de Jong, Hans; Smit, Sandra; Goicoechea, José Luis; Roe, Bruce A; Hua, Axin; Giovannoni, James J; Stack, Stephen M

    2014-05-30

    The order and orientation (arrangement) of all 91 sequenced scaffolds in the 12 pseudomolecules of the recently published tomato (Solanum lycopersicum, 2n = 2x = 24) genome sequence were positioned based on marker order in a high-density linkage map. Here, we report the arrangement of these scaffolds determined by two independent physical methods, bacterial artificial chromosome-fluorescence in situ hybridization (BAC-FISH) and optical mapping. By localizing BACs at the ends of scaffolds to spreads of tomato synaptonemal complexes (pachytene chromosomes), we showed that 45 scaffolds, representing one-third of the tomato genome, were arranged differently than predicted by the linkage map. These scaffolds occur mostly in pericentric heterochromatin where 77% of the tomato genome is located and where linkage mapping is less accurate due to reduced crossing over. Although useful for only part of the genome, optical mapping results were in complete agreement with scaffold arrangement by FISH but often disagreed with scaffold arrangement based on the linkage map. The scaffold arrangement based on FISH and optical mapping changes the positions of hundreds of markers in the linkage map, especially in heterochromatin. These results suggest that similar errors exist in pseudomolecules from other large genomes that have been assembled using only linkage maps to predict scaffold arrangement, and these errors can be corrected using FISH and/or optical mapping. Of note, BAC-FISH also permits estimates of the sizes of gaps between scaffolds, and unanchored BACs are often visualized by FISH in gaps between scaffolds and thus represent starting points for filling these gaps.

  5. Single-molecule approach to bacterial genomic comparisons via optical mapping.

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, Shiguo [Univ. Wisc.-Madison; Kile, A. [Univ. Wisc.-Madison; Bechner, M. [Univ. Wisc.-Madison; Kvikstad, E. [Univ. Wisc.-Madison; Deng, W. [Univ. Wisc.-Madison; Wei, J. [Univ. Wisc.-Madison; Severin, J. [Univ. Wisc.-Madison; Runnheim, R. [Univ. Wisc.-Madison; Churas, C. [Univ. Wisc.-Madison; Forrest, D. [Univ. Wisc.-Madison; Dimalanta, E. [Univ. Wisc.-Madison; Lamers, C. [Univ. Wisc.-Madison; Burland, V. [Univ. Wisc.-Madison; Blattner, F. R. [Univ. Wisc.-Madison; Schwartz, David C. [Univ. Wisc.-Madison

    2004-01-01

    Modern comparative genomics has been established, in part, by the sequencing and annotation of a broad range of microbial species. To gain further insights, new sequencing efforts are now dealing with the variety of strains or isolates that gives a species definition and range; however, this number vastly outstrips our ability to sequence them. Given the availability of a large number of microbial species, new whole genome approaches must be developed to fully leverage this information at the level of strain diversity that maximize discovery. Here, we describe how optical mapping, a single-molecule system, was used to identify and annotate chromosomal alterations between bacterial strains represented by several species. Since whole-genome optical maps are ordered restriction maps, sequenced strains of Shigella flexneri serotype 2a (2457T and 301), Yersinia pestis (CO 92 and KIM), and Escherichia coli were aligned as maps to identify regions of homology and to further characterize them as possible insertions, deletions, inversions, or translocations. Importantly, an unsequenced Shigella flexneri strain (serotype Y strain AMC[328Y]) was optically mapped and aligned with two sequenced ones to reveal one novel locus implicated in serotype conversion and several other loci containing insertion sequence elements or phage-related gene insertions. Our results suggest that genomic rearrangements and chromosomal breakpoints are readily identified and annotated against a prototypic sequenced strain by using the tools of optical mapping.

  6. Flood mapping by combining the strengths of optical and Sentinel active radar remote sensing

    Science.gov (United States)

    Winsemius, H. C.; Brakenridge, G. R.; Westerhoff, R.; Huizinga, J.; Villars, N.; Bishop, C.

    2012-04-01

    Flood mapping with remote sensing plays an important role in large scale disaster management procedures. For this purpose, the Dartmouth Flood Observatory (DFO) gained experience since 1993 with the production of flood maps from optical satellite imagery and has currently established, together with NASA collaborators, a fully automated, global, near real-time service. Another consortium is also presently working on an automated, near real-time, global flood mapping procedure called the 'Global Flood Observatory' (GFO), which will make use of high resolution Sentinel data. The procedure is currently tested on Envisat active radar (ASAR) imagery. Both the DFO and GFO projects provide open data output of their data and maps. The optical and radar approaches to flood mapping each have advantages and suffer from shortcomings. Optical remote sensing via the U.S. MODIS and VIIRS sensors is constrained by cloud cover but can attain a high revisit frequency (>2 /day), whereas the Envisat ASAR is not affected by cloud cover, but uses a lower revisit frequency (generally once/3 days, depending on the location). In this contribution, we demonstrate the combination of both approaches into one flood mapping result. This results in improved flood mapping in a case study over the Chao Phraya basin (Bangkok surroundings) during the recent October-November 2011 extreme flooding. The combined map shows that during overpass, ASAR reveals flooded regions over cloud-obscured areas, which clearly follow elevated features in the landscape such as roads, embankments and railways. Meanwhile, the high frequency of delivery of the optical information ensures timely information. Also, the quite different water classification methods used for the optical and ASAR data sources show good agreement and have been successfully merged into one GIS data product. This can also be automatically generated and disseminated on a global basis.

  7. Characterization of respiratory and cardiac motion from electro-anatomical mapping data for improved fusion of MRI to left ventricular electrograms.

    Directory of Open Access Journals (Sweden)

    Sébastien Roujol

    Full Text Available Accurate fusion of late gadolinium enhancement magnetic resonance imaging (MRI and electro-anatomical voltage mapping (EAM is required to evaluate the potential of MRI to identify the substrate of ventricular tachycardia. However, both datasets are not acquired at the same cardiac phase and EAM data is corrupted with respiratory motion limiting the accuracy of current rigid fusion techniques. Knowledge of cardiac and respiratory motion during EAM is thus required to enhance the fusion process. In this study, we propose a novel approach to characterize both cardiac and respiratory motion from EAM data using the temporal evolution of the 3D catheter location recorded from clinical EAM systems. Cardiac and respiratory motion components are extracted from the recorded catheter location using multi-band filters. Filters are calibrated for each EAM point using estimates of heart rate and respiratory rate. The method was first evaluated in numerical simulations using 3D models of cardiac and respiratory motions of the heart generated from real time MRI data acquired in 5 healthy subjects. An accuracy of 0.6-0.7 mm was found for both cardiac and respiratory motion estimates in numerical simulations. Cardiac and respiratory motions were then characterized in 27 patients who underwent LV mapping for treatment of ventricular tachycardia. Mean maximum amplitude of cardiac and respiratory motion was 10.2±2.7 mm (min = 5.5, max = 16.9 and 8.8±2.3 mm (min = 4.3, max = 14.8, respectively. 3D Cardiac and respiratory motions could be estimated from the recorded catheter location and the method does not rely on additional imaging modality such as X-ray fluoroscopy and can be used in conventional electrophysiology laboratory setting.

  8. Toward microendoscopy-inspired cardiac optogenetics in vivo: technical overview and perspective

    Science.gov (United States)

    Klimas, Aleksandra; Entcheva, Emilia

    2014-08-01

    The ability to perform precise, spatially localized actuation and measurements of electrical activity in the heart is crucial in understanding cardiac electrophysiology and devising new therapeutic solutions for control of cardiac arrhythmias. Current cardiac imaging techniques (i.e. optical mapping) employ voltage- or calcium-sensitive fluorescent dyes to visualize the electrical signal propagation through cardiac syncytium in vitro or in situ with very high-spatiotemporal resolution. The extension of optogenetics into the cardiac field, where cardiac tissue is genetically altered to express light-sensitive ion channels allowing electrical activity to be elicited or suppressed in a precise cell-specific way, has opened the possibility for all-optical interrogation of cardiac electrophysiology. In vivo application of cardiac optogenetics faces multiple challenges and necessitates suitable optical systems employing fiber optics to actuate and sense electrical signals. In this technical perspective, we present a compendium of clinically relevant access routes to different parts of the cardiac electrical conduction system based on currently employed catheter imaging systems and determine the quantitative size constraints for endoscopic cardiac optogenetics. We discuss the relevant technical advancements in microendoscopy, cardiac imaging, and optogenetics and outline the strategies for combining them to create a portable, miniaturized fiber-based system for all-optical interrogation of cardiac electrophysiology in vivo.

  9. Expanded IR glass map for multispectral optics designs

    Science.gov (United States)

    Bayya, Shyam; Gibson, Daniel; Nguyen, Vinh; Beadie, Guy; Sanghera, Jasbinder; Kotov, Mikhail

    2016-05-01

    This paper presents new multispectral IR glasses with transmission from 0.9 to > 14 μm in wavelength and refractive index from 2.38 to 2.17. These new glasses are designed to have comparable glass softening temperatures and compatible coefficients of thermal expansion to allow bonding and co-molding of multilayer optics. With large variation in their Abbe numbers and negative to near-zero dn/dT, optics made from these new glasses can significantly reduce the size/weight or complexity of the multispectral imaging systems for weight sensitive platforms.

  10. Return-map for semiconductor lasers with optical feedback

    DEFF Research Database (Denmark)

    Mørk, Jesper; Tromborg, Bjarne; Sabbatier, H.;

    1999-01-01

    It is well known that a semiconductor laser exposed to moderate optical feedback and biased near threshold exhibits the phenomenon of low-frequency intensity fluctuations (LFF). While this behavior can be numerically simulated using the so-called Lang-Kobayshi model, the interpretation of the phe......It is well known that a semiconductor laser exposed to moderate optical feedback and biased near threshold exhibits the phenomenon of low-frequency intensity fluctuations (LFF). While this behavior can be numerically simulated using the so-called Lang-Kobayshi model, the interpretation...

  11. The role of dye affinity in optical measurements of Cai(2+) transients in cardiac muscle.

    Science.gov (United States)

    Kong, Wei; Fast, Vladimir G

    2014-07-01

    Previous experiments in cultures of neonatal rat myocytes demonstrated that the shape of Cai(2+) transients measured using high-affinity Ca(2+)-sensitive dyes may be misrepresented. The purpose of this study was to examine the role of dye affinity in Cai(2+) measurements in intact adult cardiac tissue by comparing optical recordings obtained with high- and low-affinity dyes. Experiments were carried out in porcine left ventricular (LV) wedge preparations stained locally by intramural injection via microcapillaries (diameter = 150 μm) with a low-affinity Ca(2+)-sensitive dye Fluo-4FF or Fluo-2LA (nominal Kd, ~7-10 μmol/l), high-affinity dye Rhod-2 (Kd = 0.57 μmol/l), and Fluo-4 or Fluo-2MA (Kd, ~0.4 μmol/l); in addition, tissue was stained with transmembrane potential (Vm)-sensitive dye RH-237. Optical recordings of Vm and Cai(2+) were made using optical fibers (diameter = 325 μm) glued with the microcapillaries. The durations of Cai(2+) transients measured at 50% level of recovery (CaD50) using high-affinity Fluo-4/Fluo-2MA dyes were up to ~81% longer than those measured with low-affinity Fluo-4FF/Fluo-2LA at long pacing cycle lengths (CL). In Fluo-4/Fluo-2MA measurements at long CLs, Cai(2+) transients often (~50% of cases) exhibited slow upstroke rise and extended plateau. In Rhod-2 measurements, CaD50 was moderately longer (up to ~35%) than in Fluo-4FF recordings, but Cai(2+) transient shapes were similar. In all series of measurements, mean action potential duration values were not significantly different (P > 0.05). The delays between Vm and Cai(2+) upstrokes were comparable for low- and high-affinity dyes (P > 0.05). In conclusion, measurements of Cai(2+) transient in ventricular myocardium are strongly affected by the affinity of Ca(2+) dyes. The high-affinity dyes may overestimate the duration and alter the shape of Cai(2+) transients. Copyright © 2014 the American Physiological Society.

  12. The role of dye affinity in optical measurements of Cai2+ transients in cardiac muscle

    Science.gov (United States)

    Kong, Wei

    2014-01-01

    Previous experiments in cultures of neonatal rat myocytes demonstrated that the shape of Cai2+ transients measured using high-affinity Ca2+-sensitive dyes may be misrepresented. The purpose of this study was to examine the role of dye affinity in Cai2+ measurements in intact adult cardiac tissue by comparing optical recordings obtained with high- and low-affinity dyes. Experiments were carried out in porcine left ventricular (LV) wedge preparations stained locally by intramural injection via microcapillaries (diameter = 150 μm) with a low-affinity Ca2+-sensitive dye Fluo-4FF or Fluo-2LA (nominal Kd, ∼7–10 μmol/l), high-affinity dye Rhod-2 (Kd = 0.57 μmol/l), and Fluo-4 or Fluo-2MA (Kd, ∼0.4 μmol/l); in addition, tissue was stained with transmembrane potential (Vm)-sensitive dye RH-237. Optical recordings of Vm and Cai2+ were made using optical fibers (diameter = 325 μm) glued with the microcapillaries. The durations of Cai2+ transients measured at 50% level of recovery (CaD50) using high-affinity Fluo-4/Fluo-2MA dyes were up to ∼81% longer than those measured with low-affinity Fluo-4FF/Fluo-2LA at long pacing cycle lengths (CL). In Fluo-4/Fluo-2MA measurements at long CLs, Cai2+ transients often (∼50% of cases) exhibited slow upstroke rise and extended plateau. In Rhod-2 measurements, CaD50 was moderately longer (up to ∼35%) than in Fluo-4FF recordings, but Cai2+ transient shapes were similar. In all series of measurements, mean action potential duration values were not significantly different (P > 0.05). The delays between Vm and Cai2+ upstrokes were comparable for low- and high-affinity dyes (P > 0.05). In conclusion, measurements of Cai2+ transient in ventricular myocardium are strongly affected by the affinity of Ca2+ dyes. The high-affinity dyes may overestimate the duration and alter the shape of Cai2+ transients. PMID:24791783

  13. A new optical system for 3-dimensional mapping of the cornea

    Science.gov (United States)

    Franco, Sandra; Almeida, José B.

    2007-07-01

    In this work the authors present an optical corneal tomographer that uses two Scheimpflug cameras attached to an innovative illumination system that allows a rotary scanning of the entire cornea. The measurements are made from corneal optical sections obtained by illumination with a collimated beam expanded in a fan by a small cylindrical lens. This lens is provided with motor driven rotation in order to perform automated rotary scan of the whole cornea. The authors expect to achieve a scanning speed that will allow producing complete tomography maps without consideration of eye movements. Two Scheimpflug cameras are used to capture the images of the optical sections. With this system it is possible to obtain 3-D representation of the corneal thickness as well as corneal topography. Maps of the corneal thickness and elevation maps are shown. As Scheimpflug cameras are used, it is expected to obtained data from the lens too.

  14. Measurement and Mapping of Riverine Environments by Optical Remote Sensing

    Science.gov (United States)

    2011-09-30

    we also 4 conduted a high-resolution, intensive survey of a meander bend that we have monitired each year since 2005 and is now in the midst of a...optical and thermal remote sensing as part of their Riverine Dynamics Experiment 4. Beginning tomorrow (9-30-2011), we will be working with Arete at

  15. Irradiated integrated circuits dose-attenuation mapping using optically stimulated phosphors for packaging dosimetry

    Energy Technology Data Exchange (ETDEWEB)

    Dusseau, L.; Polge, G.; Albert, L.; Magnac, Y.; Fesquet, J.; Gasiot, J. [Univ. Montpellier II (France); Bessiere, J.C. [CORAD P.I.T. Pompignane, Montpellier (France)

    1998-12-01

    The feasibility of a dose mapping system using Optically Stimulated Luminescent (OSL) Phosphors is demonstrated. The OSL technique is briefly reviewed as well as its interest for calculation codes calibration. The sensors and the reading apparatus are presented. An example of attenuation dose map obtained for a Dual In Line Plastic Package (DIL) is given and the results compared to calculations with the code EGS4 PRESTA. Results obtained by experiment and simulation are discussed as well as the potentialities of the method.

  16. Optical color image hiding scheme based on chaotic mapping and Hartley transform

    Science.gov (United States)

    Liu, Zhengjun; Zhang, Yu; Liu, Wei; Meng, Fanyi; Wu, Qun; Liu, Shutian

    2013-08-01

    We present a color image encryption algorithm by using chaotic mapping and Hartley transform. The three components of color image are scrambled by Baker mapping. The coordinates composed of the scrambled monochrome components are converted from Cartesian coordinates to spherical coordinates. The data of azimuth angle is normalized and regarded as the key. The data of radii and zenith angle are encoded under the help of optical Hartley transform with scrambled key. An electro-optical encryption structure is designed. The final encrypted image is constituted by two selected color components of output in real number domain.

  17. Optically Mapping Multiple Bacterial Genomes Simultaneously in a Single Run

    Science.gov (United States)

    2011-11-21

    but many clinical strains of Acinetobacter baumannii , distinguished by a few insertions, are too closely related to be mapped independently on the...0704-0188 Public reporting burden for the collection of information is estimated to average 1 hour per response, including the time for reviewing ...instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing the collection of information. Send

  18. Transfer map approach to an optical effects of energy degraders on the perfomance of fragment separators.

    Energy Technology Data Exchange (ETDEWEB)

    Erdelyi, B.; Bandura, L.; Nolen, J.; Physics

    2009-01-01

    A second order analytical and an arbitrary order numerical procedure is developed for the computation of transfer maps of energy degraders. The incorporation of the wedges into the optics of fragment separators for next-generation exotic beam facilities, their optical effects, and the optimization of their performance is studied in detail. It is shown how to place and shape the degraders in the system such that aberrations are minimized and resolving powers are maximized.

  19. SpiNon- Invasive Diagnostics and Results of Interventive Treatment of Cardiac Arrhythmia Using the New System of Non-Invasive Surface Mapping “Amycard 01K”

    Directory of Open Access Journals (Sweden)

    Revishvili A. Sh.

    2012-09-01

    Conclusion. Using results of the surface activation mapping in patients with various cardiac arrhythmias shows its high diagnostic value and the necessity for a preoperative examination. Previously held topical diagnosis of arrhythmogenic substrate will reduce the time of the arrhythmia origin finding, to avoid possible adverse intraoperative complications such as a damage of coronary vessels, as well as reduce the time of intraoperative fluoroscopy.

  20. Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate.

    Science.gov (United States)

    Perry, D Alexander; Morrison, Hilary G; Adam, Rodney D

    2011-12-01

    The Giardia lamblia genome consists of 12 Mb divided among 5 chromosomes ranging in size from approximately 1 to 4 Mb. The assembled contigs of the genotype A1 isolate, WB, were previously mapped along the 5 chromosomes on the basis of hybridization of plasmid clones representing the contigs to chromosomes separated by PFGE. In the current report, we have generated an MluI optical map of the WB genome to improve the accuracy of the physical map. This has allowed us to correct several assembly errors and to better define the extent of the subtelomeric regions that are not included in the genome assembly.

  1. Prospects for clustering and lensing measurements with forthcoming intensity mapping and optical surveys

    CERN Document Server

    Pourtsidou, Alkistis; Crittenden, Robert; Metcalf, R Benton

    2015-01-01

    We explore the potential of using intensity mapping surveys (MeerKAT, SKA) and optical galaxy surveys (DES, LSST) to detect HI clustering and weak gravitational lensing of 21cm emission in auto- and cross-correlation. Our forecasts show that high precision measurements of the clustering and lensing signals can be made in the near future using the intensity mapping technique. Such studies can be used to test the intensity mapping method, and constrain parameters such as the HI density $\\Omega_{\\rm HI}$, the HI bias $b_{\\rm HI}$ and the galaxy-HI correlation coefficient $r_{\\rm HI-g}$.

  2. Prospects for clustering and lensing measurements with forthcoming intensity mapping and optical surveys

    Science.gov (United States)

    Pourtsidou, A.; Bacon, D.; Crittenden, R.; Metcalf, R. B.

    2016-06-01

    We explore the potential of using intensity mapping surveys (MeerKAT, SKA) and optical galaxy surveys (DES, LSST) to detect H I clustering and weak gravitational lensing of 21 cm emission in auto- and cross-correlation. Our forecasts show that high-precision measurements of the clustering and lensing signals can be made in the near future using the intensity mapping technique. Such studies can be used to test the intensity mapping method, and constrain parameters such as the H I density Ω _{H I}, the H I bias b_{H I} and the galaxy-H I correlation coefficient r_{H I-g}.

  3. Deformation analysis of 3D tagged cardiac images using an optical flow method

    Directory of Open Access Journals (Sweden)

    Gorman Robert C

    2010-03-01

    Full Text Available Abstract Background This study proposes and validates a method of measuring 3D strain in myocardium using a 3D Cardiovascular Magnetic Resonance (CMR tissue-tagging sequence and a 3D optical flow method (OFM. Methods Initially, a 3D tag MR sequence was developed and the parameters of the sequence and 3D OFM were optimized using phantom images with simulated deformation. This method then was validated in-vivo and utilized to quantify normal sheep left ventricular functions. Results Optimizing imaging and OFM parameters in the phantom study produced sub-pixel root-mean square error (RMS between the estimated and known displacements in the x (RMSx = 0.62 pixels (0.43 mm, y (RMSy = 0.64 pixels (0.45 mm and z (RMSz = 0.68 pixels (1 mm direction, respectively. In-vivo validation demonstrated excellent correlation between the displacement measured by manually tracking tag intersections and that generated by 3D OFM (R ≥ 0.98. Technique performance was maintained even with 20% Gaussian noise added to the phantom images. Furthermore, 3D tracking of 3D cardiac motions resulted in a 51% decrease in in-plane tracking error as compared to 2D tracking. The in-vivo function studies showed that maximum wall thickening was greatest in the lateral wall, and increased from both apex and base towards the mid-ventricular region. Regional deformation patterns are in agreement with previous studies on LV function. Conclusion A novel method was developed to measure 3D LV wall deformation rapidly with high in-plane and through-plane resolution from one 3D cine acquisition.

  4. Echocardiographic mapping of left ventricular resynchronization during cardiac resynchronization therapy procedures

    Institute of Scientific and Technical Information of China (English)

    CHAN Ngai-yin; CHOY Chi-chung; CHEUNG Kar-chun; LAU Chun-leung; LO Ying-keung; CHU Pui-shan; YUEN Ho-chuen; LAU Suet-ting; CHOI Yuen-choi

    2010-01-01

    Background Cardiac resynchronization therapy (CRT) is an effective electrical therapy for patients with moderate to severe heart failure and cardiac dyssynchrony. This study aimed to investigate the degree of acute left ventricular (LV)resynchronization with biventricular pacing (BVP) at different LV sites and to examine the feasibility of performing transthoracic echocardiography (TTE) to quantify acute LV resynchronization during CRT procedure.Methods Fourteen patients with NYHA Class ⅢⅣ heart failure, LV ejection fraction ≤35%, QRS duration ≥120 ms and septal-lateral delay (SLD) ≥60 ms on tissue Doppler imaging (TDI), underwent CRT implant. TDI was obtained from three apical views during BVP at each accessible LV site and SLD during BVP was derived. Synchronicity gain index (Sg) by SLD was defined as (1+(SLD at baseline - SLD at BVP)/SLD at baseline).Results Seventy-two sites were studied. Positive resynchronization (R+, Sg>1) was found in 42 (58%) sites. R+ was more likely in posterior or lateral than anterior LV sites (66% vs. 36%, P <0.001). Concordance of empirical LV lead implantation sites and sites with R+ was 50% (7/14).Conclusions The degree of acute LV resynchronization by BVP depends on LV lead location and empirical implantation of LV lead results in only 50% concordance with R+. Performing TTE during CRT implantation is feasible to identify LV sites with positive resynchronization.

  5. Mapping the Local Density of Optical States of a Photonic Crystal with Single Quantum Dots

    DEFF Research Database (Denmark)

    Wang, Qin; Stobbe, Søren; Lodahl, Peter

    2011-01-01

    We use single self-assembled InGaAs quantum dots as internal probes to map the local density of optical states of photonic crystal membranes. The employed technique separates contributions from nonradiative recombination and spin-flip processes by properly accounting for the role of the exciton...

  6. Intraoperative Subcortical Electrical Mapping of the Optic Tract in Awake Surgery Using a Virtual Reality Headset.

    Science.gov (United States)

    Mazerand, Edouard; Le Renard, Marc; Hue, Sophie; Lemée, Jean-Michel; Klinger, Evelyne; Menei, Philippe

    2017-01-01

    Brain mapping during awake craniotomy is a well-known technique to preserve neurological functions, especially the language. It is still challenging to map the optic radiations due to the difficulty to test the visual field intraoperatively. To assess the visual field during awake craniotomy, we developed the Functions' Explorer based on a virtual reality headset (FEX-VRH). The impaired visual field of 10 patients was tested with automated perimetry (the gold standard examination) and the FEX-VRH. The proof-of-concept test was done during the surgery performed on a patient who was blind in his right eye and presenting with a left parietotemporal glioblastoma. The FEX-VRH was used intraoperatively, simultaneously with direct subcortical electrostimulation, allowing identification and preservation of the optic radiations. The FEX-VRH detected 9 of the 10 visual field defects found by automated perimetry. The patient who underwent an awake craniotomy with intraoperative mapping of the optic tract using the FEX-VRH had no permanent postoperative visual field defect. Intraoperative visual field assessment with the FEX-VRH during direct subcortical electrostimulation is a promising approach to mapping the optical radiations and preventing a permanent visual field defect during awake surgery for epilepsy or tumor. Copyright © 2016 Elsevier Inc. All rights reserved.

  7. Comparing Manual and Semi-Automated Landslide Mapping Based on Optical Satellite Images from Different Sensors

    Directory of Open Access Journals (Sweden)

    Daniel Hölbling

    2017-05-01

    Full Text Available Object-based image analysis (OBIA has been increasingly used to map geohazards such as landslides on optical satellite images. OBIA shows various advantages over traditional image analysis methods due to its potential for considering various properties of segmentation-derived image objects (spectral, spatial, contextual, and textural for classification. For accurately identifying and mapping landslides, however, visual image interpretation is still the most widely used method. The major question therefore is if semi-automated methods such as OBIA can achieve results of comparable quality in contrast to visual image interpretation. In this paper we apply OBIA for detecting and delineating landslides in five selected study areas in Austria and Italy using optical Earth Observation (EO data from different sensors (Landsat 7, SPOT-5, WorldView-2/3, and Sentinel-2 and compare the OBIA mapping results to outcomes from visual image interpretation. A detailed evaluation of the mapping results per study area and sensor is performed by a number of spatial accuracy metrics, and the advantages and disadvantages of the two approaches for landslide mapping on optical EO data are discussed. The analyses show that both methods produce similar results, whereby the achieved accuracy values vary between the study areas.

  8. Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry

    DEFF Research Database (Denmark)

    Vranken, Charlotte; Deen, Jochem; Dirix, Lieve

    2014-01-01

    We demonstrate an approach to optical DNA mapping, which enables near single-molecule characterization of whole bacteriophage genomes. Our approach uses a DNA methyltransferase enzyme to target labelling to specific sites and copper-catalysed azide-alkyne cycloaddition to couple a fluorophore...... to the DNA. We achieve a labelling efficiency of ∼70% with an average labelling density approaching one site every 500 bp. Such labelling density bridges the gap between the output of a typical DNA sequencing experiment and the long-range information derived from traditional optical DNA mapping. We lay...... the foundations for a wider-scale adoption of DNA mapping by screening 11 methyltransferases for their ability to direct sequence-specific DNA transalkylation; the first step of the DNA labelling process and by optimizing reaction conditions for fluorophore coupling via a click reaction. Three of 11 enzymes...

  9. Satellites vs. fiber optics based networks and services - Road map to strategic planning

    Science.gov (United States)

    Marandi, James H. R.

    An overview of a generic telecommunications network and its components is presented, and the current developments in satellite and fiber optics technologies are discussed with an eye on the trends in industry. A baseline model is proposed, and a cost comparison of fiber- vs satellite-based networks is made. A step-by-step 'road map' to the successful strategic planning of telecommunications services and facilities is presented. This road map provides for optimization of the current and future networks and services through effective utilization of both satellites and fiber optics. The road map is then applied to different segments of the telecommunications industry and market place, to show its effectiveness for the strategic planning of executives of three types: (1) those heading telecommunications manufacturing concerns, (2) those leading communication service companies, and (3) managers of telecommunication/MIS departments of major corporations. Future networking issues, such as developments in integrated-services digital network standards and technologies, are addressed.

  10. Optical mapping of a rice B AC clone using restriction endonuclease and imaging with fluorescent microscopy at single molecule level

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A method of constructing restriction map by optical mapping and single molecule fluorescent microscopy is described. DNA molecules were aligned and adsorbed on a glass coverslip surface by a mbdified "molecular combing"technique, and then the surface-immobilized DNAs were cleaved in situ with a restriction endonuclease. Individual DNA molecules digested by the endonuclease EcoR I were observable with fluorescent microscopy. Using optical mapping, a physical map of a rice bacterial artificial chromosome clone was constructed. This method will facilitate genomic mapping and tracing the dynamic process in real time at a single molecule level with fluorescence microscopy.

  11. Mapping optically variable quasars towards the galactic plane

    CERN Document Server

    Fernandez-Trincado, J G; Reylé, C; Robin, A C; de Diego, J A; Motta, V; Vega, L; Downes, J J; Mateu, C; Vivas, A K; Briceño, C; Abad, C; Vieira, K; Hernández, J; Nuñez, A; Gatuzz, E

    2015-01-01

    We present preliminary results of the CIDA Equatorial Variability Survey (CEVS), looking for quasar (hereafter QSO) candidates near the Galactic plane. The CEVS contains photometric data from extended and adjacent regions of the Milky Way disk ($\\sim$ 500 sq. deg.). In this work 2.5 square degrees with moderately high temporal sampling in the CEVS were analyzed. The selection of QSO candidates was based on the study of intrinsic optical photometric variability of 14,719 light curves. We studied samples defined by cuts in the variability index (Vindex $>$ 66.5), periodicity index (Q $>$ 2), and the distribution of these sources in the plane (AT , ${\\gamma}$), using a slight modification of the first-order of the structure function for the temporal sampling of the survey. Finally, 288 sources were selected as QSO candidates. The results shown in this work are a first attempt to develop a robust method to detect QSO towards the Galactic plane in the era of massive surveys such as VISTA and Gaia.

  12. Singular Mapping for a $PT$-Symmetric Sinusoidal Optical Lattice at the Symmetry-Breaking Threshold

    CERN Document Server

    Jones, H F

    2014-01-01

    A popular $PT$-symmetric optical potential (variation of the refractive index) that supports a variety of interesting and unusual phenomena is the imaginary exponential, the limiting case of the potential $V_0[\\cos(2\\pi x/a)+i\\lambda\\sin(2\\pi x/a)]$ as $\\lambda \\to 1$, the symmetry-breaking point. For $\\lambda<1$, when the spectrum is entirely real, there is a well-known mapping by a similarity transformation to an equivalent Hermitian potential. However, as $\\lambda \\to 1$, the spectrum, while remaining real, contains Jordan blocks in which eigenvalues and the corresponding eigenfunctions coincide. In this limit the similarity transformation becomes singular. Nonetheless, we show that the mapping from the original potential to its Hermitian counterpart can still be implemented; however, the inverse mapping breaks down. We also illuminate the role of Jordan associated functions in the original problem, showing that they map onto eigenfunctions in the associated Hermitian problem.

  13. Automatic Rayleigh scattering mapping system for optical quality evaluation of test masses for gravity wave detectors

    Science.gov (United States)

    Yan, Zewu; Zhao, Chunnong; Ju, Li; Gras, Slawomir; Baringa, Pablo; Blair, David G.

    2005-01-01

    This article describes an automatic Rayleigh scattering mapping system (ARSMS), which enables quantitative high-resolution three-dimensional mapping of inhomogeneities in optical materials. The ARSMS allows large high-grade test mass samples for gravitational wave detectors to be evaluated to ensure that an adequate low level of scattering is achieved. The ARSMS combines proprietary camera software with data analysis software and control software to achieve fully automatic operation with graphical user interfaces. This article presents the instrument concept and examples of the output. Device mapping in all degrees of freedom is shown to be better than 0.5mm, with scattering sensitivity better than 0.5ppm/cm. This system is able to scan and map the Rayleigh scattering of large samples in both of cylindrical and rectangular samples using cylindrical and Cartesian coordinates.

  14. Survivable VON mapping with ambiguity similitude for differentiable maximum shared capacity in elastic optical networks

    Science.gov (United States)

    Yang, Hui; Zhu, Xiaoxu; Bai, Wei; Zhao, Yongli; Zhang, Jie; Liu, Zhu; Zhou, Ziguan; Ou, Qinghai

    2016-09-01

    Virtualization is considered to be a promising solution to support various emerging applications. This paper illustrates the problem of virtual mapping from a new perspective, and mainly focuses on survivable mapping of virtual networks and the potential trade-off between spectral resource usage effectiveness and failure resilience level. We design an optimum shared protection mapping (OSPM) scheme in elastic optical networks. A differentiable maximum shared capacity of each frequency slot is defined to more efficiently shared protection resource. In order to satisfy various assessment standards, a metric called ambiguity similitude is defined for the first time to give insight on the optimizing difficulty. Simulation results are presented to compare the outcome of the novel OSPM algorithm with traditional dedicated link protection and maximum shared protection mapping. By synthetic analysis, OSPM outperforms the other two schemes in terms of striking a perfect balance among blocking probability, resources utilization, protective success rate, and spectrum redundancy.

  15. Segmentation of B-mode cardiac ultrasound data by Bayesian Probability Maps.

    Science.gov (United States)

    Hansson, Mattias; Brandt, Sami S; Lindström, Johan; Gudmundsson, Petri; Jujić, Amra; Malmgren, Andreas; Cheng, Yuanji

    2014-10-01

    In this paper we present a model for describing the position distribution of the endocardium in the two-chamber apical long-axis view of the heart in clinical B-mode ultrasound cycles. We propose a novel Bayesian formulation, including priors for spatial and temporal smoothness, and preferred shapes and position. The shape model takes into account both endocardium, atrial region and apex. The likelihood is built using a statistical signal model, which attempts to closely model a censored signal. In addition, the use of a censored Gamma mixture model with unknown censoring point, to handle artefacts resulting from left-censoring of the in US clinical B-mode, is to our knowledge novel. The posterior density is sampled by the Gibbs method to estimate the expected latent variable representation of the endocardium, which we call the Bayesian Probability Map; the map describes the probability of pixels being classified as being within the endocardium. The regularization parameters of the model are estimated by cross-validation, and the results are compared against the two-chamber apical model of Chen et al.

  16. Mapping the spatiotemporal dynamics of calcium signaling in cellular neural networks using optical flow

    CERN Document Server

    Buibas, Marius; Nizar, Krystal; Silva, Gabriel A

    2009-01-01

    An optical flow gradient algorithm was applied to spontaneously forming networks of neurons and glia in culture imaged by fluorescence optical microscopy in order to map functional calcium signaling with single pixel resolution. Optical flow estimates the direction and speed of motion of objects in an image between subsequent frames in a recorded digital sequence of images (i.e. a movie). Computed vector field outputs by the algorithm were able to track the spatiotemporal dynamics of calcium signaling patterns. We begin by briefly reviewing the mathematics of the optical flow algorithm, describe how to solve for the displacement vectors, and how to measure their reliability. We then compare computed flow vectors with manually estimated vectors for the progression of a calcium signal recorded from representative astrocyte cultures. Finally, we applied the algorithm to preparations of primary astrocytes and hippocampal neurons and to the rMC-1 Muller glial cell line in order to illustrate the capability of the ...

  17. A fast method for optical simulation of flood maps of light-sharing detector modules

    Energy Technology Data Exchange (ETDEWEB)

    Shi, Han [Tsinghua University, Beijing (China); Lawrence Berkeley National Laboratory, CA (United States); Du, Dong [Tsinghua University, Beijing (China); Xu, JianFeng [Huazhong University of Science and Technology, Wuhan (China); Moses, William W. [Lawrence Berkeley National Laboratory, CA (United States); Peng, Qiyu, E-mail: qiyupeng@gmail.com [Lawrence Berkeley National Laboratory, CA (United States)

    2015-12-01

    Optical simulation of the detector module level is highly desired for Position Emission Tomography (PET) system design. Commonly used simulation toolkits such as GATE are not efficient in the optical simulation of detector modules with complicated light-sharing configurations, where a vast amount of photons need to be tracked. We present a fast approach based on a simplified specular reflectance model and a structured light-tracking algorithm to speed up the photon tracking in detector modules constructed with polished finish and specular reflector materials. We simulated conventional block detector designs with different slotted light guide patterns using the new approach and compared the outcomes with those from GATE simulations. While the two approaches generated comparable flood maps, the new approach was more than 200–600 times faster. The new approach has also been validated by constructing a prototype detector and comparing the simulated flood map with the experimental flood map. The experimental flood map has nearly uniformly distributed spots similar to those in the simulated flood map. In conclusion, the new approach provides a fast and reliable simulation tool for assisting in the development of light-sharing-based detector modules with a polished surface finish and using specular reflector materials.

  18. Applications of pulsed Doppler flow mapping to left sided cardiac valvular lesions.

    Science.gov (United States)

    Kalmanson, D; Veyrat, C; Gourtchiglouian, C; Bas, S; Abitbol, G

    The flow mapping procedure has been developed in parallel to the standard pulsed Doppler procedure. It has a different purpose--picking up flow signals at the site of lesions rather than calibrating velocities--and has its own methodology, developed within the last six years. On the basis of invasive correlations performed in 267 cases of valvular heart disease, we review the three-fold purpose of the flow mapping technique: diagnosing lesions, relying on the presence of flow anomalies; assessing their severity, relying on the spatial spreading of these flow signals; and identifying the site of the lesion, which is a specific advantage, relying on the anatomical location of these flow signals and/or on the direction of the jets. For example, using this technique, it is now possible to easily differentiate a cusp tear from a leak of a bioprosthesis, to measure the size of the leaks, and to reconstruct the image of aortic or mitral stenotic areas. These optimal results are only obtained using an appropriate methodology which mainly includes a) the selection of adequate two-dimensional short axis planes in order to explore the diseased valve in its entirety, because of frequent assymetrical orifices, and to pick up the jets at their starting point, b) measurements of the abnormal areas, c) when jets are studied, a three dimensional approach is required in order to cope with the three dimensional nature of the jet and to make available the calculation of three dimensional indices of severity.(ABSTRACT TRUNCATED AT 250 WORDS)

  19. Three-Dimensional Human Cardiac Tissue Engineered by Centrifugation of Stacked Cell Sheets and Cross-Sectional Observation of Its Synchronous Beatings by Optical Coherence Tomography.

    Science.gov (United States)

    Haraguchi, Yuji; Hasegawa, Akiyuki; Matsuura, Katsuhisa; Kobayashi, Mari; Iwana, Shin-Ichi; Kabetani, Yasuhiro; Shimizu, Tatsuya

    2017-01-01

    Three-dimensional (3D) tissues are engineered by stacking cell sheets, and these tissues have been applied in clinical regenerative therapies. The optimal fabrication technique of 3D human tissues and the real-time observation system for these tissues are important in tissue engineering, regenerative medicine, cardiac physiology, and the safety testing of candidate chemicals. In this study, for aiming the clinical application, 3D human cardiac tissues were rapidly fabricated by human induced pluripotent stem (iPS) cell-derived cardiac cell sheets with centrifugation, and the structures and beatings in the cardiac tissues were observed cross-sectionally and noninvasively by two optical coherence tomography (OCT) systems. The fabrication time was reduced to approximately one-quarter by centrifugation. The cross-sectional observation showed that multilayered cardiac cell sheets adhered tightly just after centrifugation. Additionally, the cross-sectional transmissions of beatings within multilayered human cardiac tissues were clearly detected by OCT. The observation showed the synchronous beatings of the thicker 3D human cardiac tissues, which were fabricated rapidly by cell sheet technology and centrifugation. The rapid tissue-fabrication technique and OCT technology will show a powerful potential in cardiac tissue engineering, regenerative medicine, and drug discovery research.

  20. Diagnosis of Acute Global Myocarditis Using Cardiac MRI with Quantitative T1 and T2 Mapping: Case Report and Literature Review

    Energy Technology Data Exchange (ETDEWEB)

    Park, Chul Hwan [Department of Radiology and Research Institute of Radiological Science, Yonsei University Health System, Seoul 135-720 (Korea, Republic of); Choi, Eui-Young [Division of Cardiology, Department of Internal Medicine, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul 135-720 (Korea, Republic of); Greiser, Andreas [Healthcare Sector, Siemens AG, Erlangen D-91052 (Germany); Paek, Mun Young [Siemens Ltd., Seoul 120-837 (Korea, Republic of); Hwang, Sung Ho; Kim, Tae Hoon [Department of Radiology and Research Institute of Radiological Science, Yonsei University Health System, Seoul 135-720 (Korea, Republic of)

    2013-07-01

    The diagnosis of myocarditis can be challenging given that symptoms, clinical exam findings, electrocardiogram results, biomarkers, and echocardiogram results are often non-specific. Endocardial biopsy is an established method for diagnosing myocarditis, but carries the risk of complications and false negative results. Cardiac magnetic resonance imaging (MRI) has become the primary non-invasive imaging tool in patients with suspected myocarditis. Myocarditis can be diagnosed by using three tissue markers including edema, hyperemia/capillary leak, and necrosis/fibrosis. The interpretation of cardiac MR findings can be confusing, especially when the myocardium is diffusely involved. Using T1 and T2 maps, the diagnosis of myocarditis can be made even in cases of global myocarditis with the help of quantitative analysis. We herein describe a case of acute global myocarditis which was diagnosed by using quantitative T1 and T2 mapping.

  1. Space Telescope and Optical Reverberation Mapping Project. V. Optical Spectroscopic Campaign and Emission-line Analysis for NGC 5548

    Science.gov (United States)

    Pei, L.; Fausnaugh, M. M.; Barth, A. J.; Peterson, B. M.; Bentz, M. C.; De Rosa, G.; Denney, K. D.; Goad, M. R.; Kochanek, C. S.; Korista, K. T.; Kriss, G. A.; Pogge, R. W.; Bennert, V. N.; Brotherton, M.; Clubb, K. I.; Dalla Bontà, E.; Filippenko, A. V.; Greene, J. E.; Grier, C. J.; Vestergaard, M.; Zheng, W.; Adams, Scott M.; Beatty, Thomas G.; Bigley, A.; Brown, Jacob E.; Brown, Jonathan S.; Canalizo, G.; Comerford, J. M.; Coker, Carl T.; Corsini, E. M.; Croft, S.; Croxall, K. V.; Deason, A. J.; Eracleous, Michael; Fox, O. D.; Gates, E. L.; Henderson, C. B.; Holmbeck, E.; Holoien, T. W.-S.; Jensen, J. J.; Johnson, C. A.; Kelly, P. L.; Kim, S.; King, A.; Lau, M. W.; Li, Miao; Lochhaas, Cassandra; Ma, Zhiyuan; Manne-Nicholas, E. R.; Mauerhan, J. C.; Malkan, M. A.; McGurk, R.; Morelli, L.; Mosquera, Ana; Mudd, Dale; Muller Sanchez, F.; Nguyen, M. L.; Ochner, P.; Ou-Yang, B.; Pancoast, A.; Penny, Matthew T.; Pizzella, A.; Poleski, Radosław; Runnoe, Jessie; Scott, B.; Schimoia, Jaderson S.; Shappee, B. J.; Shivvers, I.; Simonian, Gregory V.; Siviero, A.; Somers, Garrett; Stevens, Daniel J.; Strauss, M. A.; Tayar, Jamie; Tejos, N.; Treu, T.; Van Saders, J.; Vican, L.; Villanueva, S., Jr.; Yuk, H.; Zakamska, N. L.; Zhu, W.; Anderson, M. D.; Arévalo, P.; Bazhaw, C.; Bisogni, S.; Borman, G. A.; Bottorff, M. C.; Brandt, W. N.; Breeveld, A. A.; Cackett, E. M.; Carini, M. T.; Crenshaw, D. M.; De Lorenzo-Cáceres, A.; Dietrich, M.; Edelson, R.; Efimova, N. V.; Ely, J.; Evans, P. A.; Ferland, G. J.; Flatland, K.; Gehrels, N.; Geier, S.; Gelbord, J. M.; Grupe, D.; Gupta, A.; Hall, P. B.; Hicks, S.; Horenstein, D.; Horne, Keith; Hutchison, T.; Im, M.; Joner, M. D.; Jones, J.; Kaastra, J.; Kaspi, S.; Kelly, B. C.; Kennea, J. A.; Kim, M.; Kim, S. C.; Klimanov, S. A.; Lee, J. C.; Leonard, D. C.; Lira, P.; MacInnis, F.; Mathur, S.; McHardy, I. M.; Montouri, C.; Musso, R.; Nazarov, S. V.; Netzer, H.; Norris, R. P.; Nousek, J. A.; Okhmat, D. N.; Papadakis, I.; Parks, J. R.; Pott, J.-U.; Rafter, S. E.; Rix, H.-W.; Saylor, D. A.; Schnülle, K.; Sergeev, S. G.; Siegel, M.; Skielboe, A.; Spencer, M.; Starkey, D.; Sung, H.-I.; Teems, K. G.; Turner, C. S.; Uttley, P.; Villforth, C.; Weiss, Y.; Woo, J.-H.; Yan, H.; Young, S.; Zu, Y.

    2017-03-01

    We present the results of an optical spectroscopic monitoring program targeting NGC 5548 as part of a larger multiwavelength reverberation mapping campaign. The campaign spanned 6 months and achieved an almost daily cadence with observations from five ground-based telescopes. The Hβ and He ii λ4686 broad emission-line light curves lag that of the 5100 Å optical continuum by {4.17}-0.36+0.36 {days} and {0.79}-0.34+0.35 {days}, respectively. The Hβ lag relative to the 1158 Å ultraviolet continuum light curve measured by the Hubble Space Telescope is ∼50% longer than that measured against the optical continuum, and the lag difference is consistent with the observed lag between the optical and ultraviolet continua. This suggests that the characteristic radius of the broad-line region is ∼50% larger than the value inferred from optical data alone. We also measured velocity-resolved emission-line lags for Hβ and found a complex velocity-lag structure with shorter lags in the line wings, indicative of a broad-line region dominated by Keplerian motion. The responses of both the Hβ and He ii emission lines to the driving continuum changed significantly halfway through the campaign, a phenomenon also observed for C iv, Lyα, He ii(+O iii]), and Si iv(+O iv]) during the same monitoring period. Finally, given the optical luminosity of NGC 5548 during our campaign, the measured Hβ lag is a factor of five shorter than the expected value implied by the R BLR–L AGN relation based on the past behavior of NGC 5548.

  2. Integration of Optical and SAR Data for Burned Area Mapping in Mediterranean Regions

    Directory of Open Access Journals (Sweden)

    Daniela Stroppiana

    2015-01-01

    Full Text Available The aim of this paper is to investigate how optical and Synthetic Aperture Radar (SAR data can be combined in an integrated multi-source framework to identify burned areas at the regional scale. The proposed approach is based on the use of fuzzy sets theory and a region-growing algorithm. Landsat TM and (C-band ENVISAT Advanced Synthetic Aperture Radar (ASAR images acquired for the year 2003 have been processed to extract burned area maps over Portugal. Pre-post fire SAR backscatter temporal difference has been integrated with optical spectral indices to the aim of reducing confusion between burned areas and low-albedo surfaces. The output fuzzy score maps have been compared with reference fire perimeters provided by the Fire Atlas of Portugal. Results show that commission and omission errors in the output burned area maps are a function of the threshold applied to the fuzzy score maps; between the two extremes of the greatest producer’s accuracy (omission error < 10% and user’s accuracy (commission error < 5%, an intermediate threshold value provides errors of about 20% over the study area. The integration of SAR backscatter allowed reducing local commission errors from 65.4% (using optical data, only to 11.4%, showing to significantly mitigate local errors due to the presence of cloud shadows and wetland areas. Overall, the proposed method is flexible and open to further developments; also in the perspective of the European Space Agency (ESA Sentinel missions operationally providing SAR and optical datasets.

  3. Moment method, Higher order dispersion map and other effects in optical pulse propagation

    OpenAIRE

    Mondal, Basanti; Chowdhury, A. Roy.

    2005-01-01

    Analytical and numerical procedures are applied to show that both third and second order dispersion maps can be explicitly constructed and their mutual effects on the optical pulse propagation are analysed. In these connection it is also shown how the other important features such as amplification, intra-channel Raman Scattering(IRS), fibre loss, centre frequency of the pulse spectrum effect the propagation of pulse. Due to the presence of IRS, moment method is adopted which is easily reduced...

  4. Mapping of the extinction in Giant Molecular Clouds using optical star counts

    OpenAIRE

    Cambresy, L.

    1999-01-01

    This paper presents large scale extinction maps of most nearby Giant Molecular Clouds of the Galaxy (Lupus, rho-Ophiuchus, Scorpius, Coalsack, Taurus, Chamaeleon, Musca, Corona Australis, Serpens, IC 5146, Vela, Orion, Monoceros R1 and R2, Rosette, Carina) derived from a star count method using an adaptive grid and a wavelet decomposition applied to the optical data provided by the USNO-Precision Measuring Machine. The distribution of the extinction in the clouds leads to estimate their total...

  5. Optical imaging of retinotopic maps in a small songbird, the zebra finch.

    Directory of Open Access Journals (Sweden)

    Nina Keary

    Full Text Available BACKGROUND: The primary visual cortex of mammals is characterised by a retinotopic representation of the visual field. It has therefore been speculated that the visual wulst, the avian homologue of the visual cortex, also contains such a retinotopic map. We examined this for the first time by optical imaging of intrinsic signals in zebra finches, a small songbird with laterally placed eyes. In addition to the visual wulst, we visualised the retinotopic map of the optic tectum which is homologue to the superior colliculus in mammals. METHODOLOGY/PRINCIPAL FINDINGS: For the optic tectum, our results confirmed previous accounts of topography based on anatomical studies and conventional electrophysiology. Within the visual wulst, the retinotopy revealed by our experiments has not been illustrated convincingly before. The frontal part of the visual field (0 degrees +/-30 degrees azimuth was not represented in the retinotopic map. The visual field from 30 degrees -60 degrees azimuth showed stronger magnification compared with more lateral regions. Only stimuli within elevations between about 20 degrees and 40 degrees above the horizon elicited neuronal activation. Activation from other elevations was masked by activation of the preferred region. Most interestingly, we observed more than one retinotopic representation of visual space within the visual wulst, which indicates that the avian wulst, like the visual cortex in mammals, may show some compartmentation parallel to the surface in addition to its layered structure. CONCLUSION/SIGNIFICANCE: Our results show the applicability of the optical imaging method also for small songbirds. We obtained a more detailed picture of retinotopic maps in birds, especially on the functional neuronal organisation of the visual wulst. Our findings support the notion of homology of visual wulst and visual cortex by showing that there is a functional correspondence between the two areas but also raise questions based

  6. A fractional snow cover mapping method for optical remote sensing data, applicable to continental scale

    OpenAIRE

    2013-01-01

    This thesis focuses on the determination of fractional snow cover (FSC) from optical data provided by satellite instruments. It describes the method development, starting from a simple regionally applicable linear interpolation method and ending at a globally applicable, semi-empirical modeling approach. The development work was motivated by the need for an easily implementable and feasible snow mapping method that could provide reliable information particularly for forested areas. The con...

  7. A fractional snow cover mapping method for optical remote sensing data, applicable to continental scale

    OpenAIRE

    2013-01-01

    This thesis focuses on the determination of fractional snow cover (FSC) from optical data provided by satellite instruments. It describes the method development, starting from a simple regionally applicable linear interpolation method and ending at a globally applicable, semi-empirical modeling approach. The development work was motivated by the need for an easily implementable and feasible snow mapping method that could provide reliable information particularly for forested areas. The co...

  8. Regional contrast agent quantification in a mouse model of myocardial infarction using 3D cardiac T1 mapping

    Directory of Open Access Journals (Sweden)

    Nicolay Klaas

    2011-10-01

    effective relaxivity of the liposomal contrast agent was only about half the value determined in vitro. Conclusions 3D cardiac T1 mapping by CMR can be used to monitor the accumulation of contrast agents in contrast-enhanced studies of murine myocardial infarction. The contrast agent relaxivity was decreased under in vivo conditions compared to in vitro measurements, which needs consideration when quantifying local contrast agent concentrations.

  9. Early auditory experience aligns the auditory map of space in the optic tectum of the barn owl.

    Science.gov (United States)

    Knudsen, E I

    1983-11-25

    Auditory and visual space are mapped in the optic tectum of the barn owl. Normally, these maps of space are in close mutual alignment. Ear plugs inserted unilaterally in young barn owls disrupted the binaural cues that constitute the basis of the auditory map. Yet when recordings were made from the tecta of these birds as adults, the auditory and visual maps were in register. When the ear plugs were removed from these adult birds and binaural balance was restored, the auditory maps were shifted substantially relative to the visual maps and relative to the physical borders of the tecta. These results demonstrate that the neural connectivity that gives rise to the auditory map of space in the optic tectum can be modified by experience in such a way that spatial alignment between sensory modalities is maintained.

  10. Herschel-Planck dust optical depth and column density maps - II. Perseus

    CERN Document Server

    Zari, E; Alves, J; Lada, C J; Bouy, H

    2015-01-01

    We present optical depth and temperature maps of the Perseus molecular cloud, obtained combining dust emission data from the Herschel and Planck satellites and 2MASS/NIR dust extinction maps. The maps have a resolution of 36 arcsec in the Herschel regions, and of 5 arcmin elsewhere. The dynamic range of the optical depth map ranges from $1\\times10^{-2}\\, \\mathrm{mag}$ up to $20 \\,\\mathrm{mag}$ in the equivalent K band extinction. We also evaluate the ratio between the $2.2 \\,\\mathrm{\\mu m}$ extinction coefficient and the $850 \\,\\mathrm{\\mu m}$ opacity. The value we obtain is close to the one found in the Orion B molecular cloud. We show that the cumulative and the differential area function of the data (which is proportional to the probability distribution function of the cloud column density) follow power laws with index respectively $\\simeq -2$, and $\\simeq -3$. We use WISE data to improve current YSO catalogues based mostly on \\emph{Spitzer} data and we build an up-to-date selection of Class~I/0 objects. U...

  11. Image fusion of microwave and optical remote sensing data for topographic map updating in the tropics

    Science.gov (United States)

    Pohl, Christine; van Genderen, John L.

    1995-11-01

    Temporal monitoring using remote sensing for topographic mapping requires continuous acquisition of image data. In many countries, but especially in the human Tropics, the heavy cloud cover is a major drawback for visible and infrared remote sensing. The research project presented in this paper uses the idea of integrating data from optical and microwave sensors using digital image fusion techniques to overcome the cloud cover problem. Additionally the combination of radar with optical data increases the interpretation capabilities and the reliability of the results due to the complementary nature of microwave and optical images. While optical data represents the reflectance of ground cover in visible and near-infrared, the radar is very sensitive to the shape, orientation, roughness and moisture content of the illuminated ground objects. This research investigates the geometric aspect of image fusion for topographic map updating. The paper describes experiences gained from an area in the north of The Netherlands (`Friesland') as calibration test site in comparison with first results from the research test site (`Bengkulu'), located on the south west coast of Sumatra in Indonesia. The data used for this investigated was acquired by SPOT, Landsat, ERS-1 and JERS-1.

  12. Underwater Multi-Vehicle Trajectory Alignment and Mapping Using Acoustic and Optical Constraints

    Directory of Open Access Journals (Sweden)

    Ricard Campos

    2016-03-01

    Full Text Available Multi-robot formations are an important advance in recent robotic developments, as they allow a group of robots to merge their capacities and perform surveys in a more convenient way. With the aim of keeping the costs and acoustic communications to a minimum, cooperative navigation of multiple underwater vehicles is usually performed at the control level. In order to maintain the desired formation, individual robots just react to simple control directives extracted from range measurements or ultra-short baseline (USBL systems. Thus, the robots are unaware of their global positioning, which presents a problem for the further processing of the collected data. The aim of this paper is two-fold. First, we present a global alignment method to correct the dead reckoning trajectories of multiple vehicles to resemble the paths followed during the mission using the acoustic messages passed between vehicles. Second, we focus on the optical mapping application of these types of formations and extend the optimization framework to allow for multi-vehicle geo-referenced optical 3D mapping using monocular cameras. The inclusion of optical constraints is not performed using the common bundle adjustment techniques, but in a form improving the computational efficiency of the resulting optimization problem and presenting a generic process to fuse optical reconstructions with navigation data. We show the performance of the proposed method on real datasets collected within the Morph EU-FP7 project.

  13. Far-field mapping of the longitudinal magnetic and electric optical fields

    CERN Document Server

    Ecoffey, C

    2013-01-01

    In this letter, we demonstrate the experimental mapping of the longitudinal magnetic and electric optical fields with a standard scanning microscope that involves a high numerical aperture far-field objective. The imaging concept relies upon the insertion of an azimuthal or a radial polarizer within the detection path of the microscope which acts as an optical electromagnetic filter aimed at transmitting selectively to the detector the signal from the magnetic or electric longitudinal fields present in the detection volume, respectively. The resulting system is thus versatile, non invasive, of high resolution, and shows high detection efficiencies. Magnetic optical properties of physical and biological micro and nano-structures may thus be revealed with a far-field microscope.

  14. Tomographic active optical trapping of arbitrarily shaped objects by exploiting 3-D refractive index maps

    CERN Document Server

    Kim, Kyoohyun

    2016-01-01

    Optical trapping can be used to manipulate the three-dimensional (3-D) motion of spherical particles based on the simple prediction of optical forces and the responding motion of samples. However, controlling the 3-D behaviour of non-spherical particles with arbitrary orientations is extremely challenging, due to experimental difficulties and the extensive computations. Here, we achieved the real-time optical control of arbitrarily shaped particles by combining the wavefront shaping of a trapping beam and measurements of the 3-D refractive index (RI) distribution of samples. Engineering the 3-D light field distribution of a trapping beam based on the measured 3-D RI map of samples generates a light mould, which can be used to manipulate colloidal and biological samples which have arbitrary orientations and/or shapes. The present method provides stable control of the orientation and assembly of arbitrarily shaped particles without knowing a priori information about the sample geometry. The proposed method can ...

  15. Acoustic Longitudinal Field NIF Optic Feature Detection Map Using Time-Reversal & MUSIC

    Energy Technology Data Exchange (ETDEWEB)

    Lehman, S K

    2006-02-09

    We developed an ultrasonic longitudinal field time-reversal and MUltiple SIgnal Classification (MUSIC) based detection algorithm for identifying and mapping flaws in fused silica NIF optics. The algorithm requires a fully multistatic data set, that is one with multiple, independently operated, spatially diverse transducers, each transmitter of which, in succession, launches a pulse into the optic and the scattered signal measured and recorded at every receiver. We have successfully localized engineered ''defects'' larger than 1 mm in an optic. We confirmed detection and localization of 3 mm and 5 mm features in experimental data, and a 0.5 mm in simulated data with sufficiently high signal-to-noise ratio. We present the theory, experimental results, and simulated results.

  16. Evaluation of optical imaging and spectroscopy approaches for cardiac tissue depth assessment

    Energy Technology Data Exchange (ETDEWEB)

    Lin, B; Matthews, D; Chernomordik, V; Gandjbakhche, A; Lane, S; Demos, S G

    2008-02-13

    NIR light scattering from ex vivo porcine cardiac tissue was investigated to understand how imaging or point measurement approaches may assist development of methods for tissue depth assessment. Our results indicate an increase of average image intensity as thickness increases up to approximately 2 mm. In a dual fiber spectroscopy configuration, sensitivity up to approximately 3 mm with an increase to 6 mm when spectral ratio between selected wavelengths was obtained. Preliminary Monte Carlo results provided reasonable fit to the experimental data.

  17. 3D characterization of EMT cell density in developing cardiac cushions using optical coherence tomography (Conference Presentation)

    Science.gov (United States)

    Yu, Siyao; Gu, Shi; Zhao, Xiaowei; Liu, Yehe; Jenkins, Michael W.; Watanabe, Michiko; Rollins, Andrew M.

    2017-02-01

    Congenital heart defects (CHDs) are the most common birth defect, affecting between 4 and 75 per 1,000 live births depending on the inclusion criteria. Many of these defects can be traced to defects of cardiac cushions, critical structures during development that serve as precursors to many structures in the mature heart, including the atrial and ventricular septa, and all four sets of cardiac valves. Epithelial-mesenchymal transition (EMT) is the process through which cardiac cushions become populated with cells. Altered cushion size or altered cushion cell density has been linked to many forms of CHDs, however, quantitation of cell density in the complex 3D cushion structure poses a significant challenge to conventional histology. Optical coherence tomography (OCT) is a technique capable of 3D imaging of the developing heart, but typically lacks the resolution to differentiate individual cells. Our goal is to develop an algorithm to quantitatively characterize the density of cells in the developing cushion using 3D OCT imaging. First, in a heart volume, the atrioventricular (AV) cushions were manually segmented. Next, all voxel values in the region of interest were pooled together to generate a histogram. Finally, two populations of voxels were classified using either K-means classification, or a Gaussian mixture model (GMM). The voxel population with higher values represents cells in the cushion. To test the algorithm, we imaged and evaluated avian embryonic hearts at looping stages. As expected, our result suggested that the cell density increases with developmental stages. We validated the technique against scoring by expert readers.

  18. Optical control of cardiac cell excitability based on two-photon infrared absorption of AzoTAB

    CERN Document Server

    Shcherbakov, D; Erofeev, I; Astafiev, A

    2014-01-01

    Recent studies of AzoTAB activity in excitable cell cultures have shown that this substance is able to control excitability depending on isomer, cis or trans, predominating in the cellular membrane. Control of isomerization can be performed noninvasively by UV-visual radiation. At the same time it is well-known that azobenezenes can be effectively transformed from one isomer into another by two-photon absorption. Current work is devoted to the study of trans-AzoTAB two-photon transformation in aqueous solution and inside primal neonatal contractive rat cardiomyocytes. In accordance with results obtained Azo-TAB can be used as a probe for two-photon optical control of cardiac excitability.

  19. Expanded IR glass map with new NRL glasses for multispectral optics designs (Conference Presentation)

    Science.gov (United States)

    Bayya, Shyam S.; Gibson, Daniel; Nguyen, Vinh; Sanghera, Jasbinder; Kotov, Mikhail; McClain, Collin; Vizgaitis, Jay

    2017-06-01

    There is a strong desire to reduce size and weight of single and multiband IR imaging systems in ISR operations on hand-held, helmet mounted or airborne platforms. NRL is working on developing new IR glasses that transmit from 0.9 to > 12 µm in wavelength, with refractive index ranging from 2.38 to 3.17, to expand the glass map and provide compact solutions to multispectral imaging systems. These glasses were specifically designed to have comparable glass molding temperatures and thermal properties so that they can be laminated and co-molded into optics with reduced number of air-glass interfaces (lower Fresnel reflection losses). These new NRL glasses also have negative or very low dn/dT, making it easier to athermalize the optical system. Our multispectral optics designs using these new materials demonstrate reduced size, complexity and improved performance. This presentation will cover discussions on the new optical materials, multispectral designs, as well fabrication and characterization of new optics.

  20. Mapping Urban Impervious Surface by Fusing Optical and SAR Data at the Decision Level

    Directory of Open Access Journals (Sweden)

    Zhenfeng Shao

    2016-11-01

    Full Text Available The proliferation of impervious surfaces results in a series of environmental issues, such as the decrease of vegetated areas and the aggravation of the urban heat island effects. The mapping of impervious surface and its spatial distributions is of significance for the ecological study of urban environment. Currently, the integration of optical and synthetic aperture radar (SAR data has shown advantages in accurately characterizing impervious surface. However, the fusion mainly occurs at the pixel and feature levels which are subject to influences of data noises and feature selections, respectively. In this paper, an innovative and effective method was developed to extract urban impervious surface by synergistically utilizing optical and SAR images at the decision level. The objective of this paper was to obtain an accurate urban impervious surface map based on the random forest classifier and the evidence theory and to provide a detailed uncertainty analysis accompanying the fused impervious surface maps. In this study, both the GaoFen (GF-1 and Sentinel-1A imagery were first used as independent data sources for mapping urban impervious surfaces. Then additional spectral features and texture features were extracted and integrated with the original GF-1 and Sentinel-1A images in generating impervious surfaces. Finally, based on the Dempster-Shafer (D-S theory, impervious surfaces were produced by fusing the previously estimated impervious surfaces from different datasets at the decision level. Results showed that impervious surfaces estimated from the combined use of original images and features yielded a higher accuracy than those from the original optical or SAR data. Further validations suggested that optical data was better than SAR data in separating impervious surfaces from non-impervious surfaces. The fused impervious surfaces at the decision level had a higher overall accuracy than those produced independently by optical or SAR data. It

  1. Landslide Mapping in Vegetated Areas Using Change Detection Based on Optical and Polarimetric SAR Data

    Directory of Open Access Journals (Sweden)

    Simon Plank

    2016-04-01

    Full Text Available Mapping of landslides, quickly providing information about the extent of the affected area and type and grade of damage, is crucial to enable fast crisis response, i.e., to support rescue and humanitarian operations. Most synthetic aperture radar (SAR data-based landslide detection approaches reported in the literature use change detection techniques, requiring very high resolution (VHR SAR imagery acquired shortly before the landslide event, which is commonly not available. Modern VHR SAR missions, e.g., Radarsat-2, TerraSAR-X, or COSMO-SkyMed, do not systematically cover the entire world, due to limitations in onboard disk space and downlink transmission rates. Here, we present a fast and transferable procedure for mapping of landslides, based on change detection between pre-event optical imagery and the polarimetric entropy derived from post-event VHR polarimetric SAR data. Pre-event information is derived from high resolution optical imagery of Landsat-8 or Sentinel-2, which are freely available and systematically acquired over the entire Earth’s landmass. The landslide mapping is refined by slope information from a digital elevation model generated from bi-static TanDEM-X imagery. The methodology was successfully applied to two landslide events of different characteristics: A rotational slide near Charleston, West Virginia, USA and a mining waste earthflow near Bolshaya Talda, Russia.

  2. ANALYSIS OF RADAR AND OPTICAL SPACE BORNE DATA FOR LARGE SCALE TOPOGRAPHICAL MAPPING

    Directory of Open Access Journals (Sweden)

    W. Tampubolon

    2015-03-01

    Full Text Available Normally, in order to provide high resolution 3 Dimension (3D geospatial data, large scale topographical mapping needs input from conventional airborne campaigns which are in Indonesia bureaucratically complicated especially during legal administration procedures i.e. security clearance from military/defense ministry. This often causes additional time delays besides technical constraints such as weather and limited aircraft availability for airborne campaigns. Of course the geospatial data quality is an important issue for many applications. The increasing demand of geospatial data nowadays consequently requires high resolution datasets as well as a sufficient level of accuracy. Therefore an integration of different technologies is required in many cases to gain the expected result especially in the context of disaster preparedness and emergency response. Another important issue in this context is the fast delivery of relevant data which is expressed by the term “Rapid Mapping”. In this paper we present first results of an on-going research to integrate different data sources like space borne radar and optical platforms. Initially the orthorectification of Very High Resolution Satellite (VHRS imagery i.e. SPOT-6 has been done as a continuous process to the DEM generation using TerraSAR-X/TanDEM-X data. The role of Ground Control Points (GCPs from GNSS surveys is mandatory in order to fulfil geometrical accuracy. In addition, this research aims on providing suitable processing algorithm of space borne data for large scale topographical mapping as described in section 3.2. Recently, radar space borne data has been used for the medium scale topographical mapping e.g. for 1:50.000 map scale in Indonesian territories. The goal of this on-going research is to increase the accuracy of remote sensing data by different activities, e.g. the integration of different data sources (optical and radar or the usage of the GCPs in both, the optical and the

  3. Long Term Optical and Infrared Reverberation Mapping of High and Low Luminosity Active Galactic Nuclei

    Science.gov (United States)

    Gorjian, Varoujan; Barth, Aaron; Brandt, Niel; Dawson, Kyle; Green, Paul; Ho, Luis; Horne, Keith; Jiang, Linhua; Joner, Mike; Kenney, John; McGreer, Ian; Nordgren, Tyler; Schneider, Donald; Shen, Yue; Tao, Charling

    2016-08-01

    Previous Spitzer reverberation monitoring projects looking for UV/optical light absorbed and re-emitted in the IR by dust have been limited to very low luminosity active galactic nuclei (AGN) that could potentially show reverberation within a single cycle (~1 year). Cycle 11-12's two year baseline allowed for the reverberation mapping of 17 high luminosity quasars from the Sloan Digital Sky Survey Reverberation Mapping project. By combining ground based monitoring from Pan-STARRS, CFHT, and Steward Observatory telescopes with Spitzer data we have for the first time detected dust reverberation in quasars. We propose to continue this project to capitalize on the continuing optical motnoring from the ground and to increase the confidence in the detected lags. Additionally, the Call for Proposals asks for up to 1000 hours of observations in the Spitzer CVZ to accommodate battery charging needs. We propose to add to our quasar sample five lower luminosity Seyfert galaxies from the Pan-STARRS ground based optical survey that are in the Spitzer CVZ, which will increase the luminosity range of AGN we are studying and, combined with additional ground based observatories, provide for a continuous monitoring campaign lasting 2 years and thus provide the most detailed study of dust around AGN to date.

  4. A Method to Analyze the Potential of Optical Remote Sensing for Benthic Habitat Mapping

    Directory of Open Access Journals (Sweden)

    Rodrigo A. Garcia

    2015-10-01

    Full Text Available Quantifying the number and type of benthic classes that are able to be spectrally identified in shallow water remote sensing is important in understanding its potential for habitat mapping. Factors that impact the effectiveness of shallow water habitat mapping include water column turbidity, depth, sensor and environmental noise, spectral resolution of the sensor and spectral variability of the benthic classes. In this paper, we present a simple hierarchical clustering method coupled with a shallow water forward model to generate water-column specific spectral libraries. This technique requires no prior decision on the number of classes to output: the resultant classes are optically separable above the spectral noise introduced by the sensor, image based radiometric corrections, the benthos’ natural spectral variability and the attenuating properties of a variable water column at depth. The modeling reveals the effect reducing the spectral resolution has on the number and type of classes that are optically distinct. We illustrate the potential of this clustering algorithm in an analysis of the conditions, including clustering accuracy, sensor spectral resolution and water column optical properties and depth that enabled the spectral distinction of the seagrass Amphibolis antartica from benthic algae.

  5. Integrated optical sensors for 2D spatial chemical mapping (Conference Presentation)

    Science.gov (United States)

    Flores, Raquel; Janeiro, Ricardo; Viegas, Jaime

    2017-02-01

    Sensors based on optical waveguides for chemical sensing have attracted increasing interest over the last two decades, fueled by potential applications in commercial lab-on-a-chip devices for medical and food safety industries. Even though the early studies were oriented for single-point detection, progress in device size reduction and device yield afforded by photonics foundries have opened the opportunity for distributed dynamic chemical sensing at the microscale. This will allow researchers to follow the dynamics of chemical species in field of microbiology, and microchemistry, with a complementary method to current technologies based on microfluorescence and hyperspectral imaging. The study of the chemical dynamics at the surface of photoelectrodes in water splitting cells are a good candidate to benefit from such optochemical sensing devices that includes a photonic integrated circuit (PIC) with multiple sensors for real-time detection and spatial mapping of chemical species. In this project, we present experimental results on a prototype integrated optical system for chemical mapping based on the interaction of cascaded resonant optical devices, spatially covered with chemically sensitive polymers and plasmon-enhanced nanostructured metal/metal-oxide claddings offering chemical selectivity in a pixelated surface. In order to achieve a compact footprint, the prototype is based in a silicon photonics platform. A discussion on the relative merits of a photonic platform based on large bandgap metal oxides and nitrides which have higher chemical resistance than silicon is also presented.

  6. Computational optical distortion correction using a radial basis function-based mapping method.

    Science.gov (United States)

    Bauer, Aaron; Vo, Sophie; Parkins, Keith; Rodriguez, Francisco; Cakmakci, Ozan; Rolland, Jannick P

    2012-07-01

    A distortion mapping and computational image unwarping method based on a network interpolation that uses radial basis functions is presented. The method is applied to correct distortion in an off-axis head-worn display (HWD) presenting up to 23% highly asymmetric distortion over a 27°x21° field of view. A 10(-5) mm absolute error of the mapping function over the field of view was achieved. The unwarping efficacy was assessed using the image-rendering feature of optical design software. Correlation coefficients between unwarped images seen through the HWD and the original images, as well as edge superimposition results, are presented. In an experiment, images are prewarped using radial basis functions for a recently built, off-axis HWD with a 20° diagonal field of view in a 4:3 ratio. Real-time video is generated by a custom application with 2 ms added latency and is demonstrated.

  7. HI and cosmological constraints from intensity mapping, optical, and CMB surveys

    CERN Document Server

    Pourtsidou, Alkistis; Crittenden, Robert

    2016-01-01

    We forecast constraints on neutral hydrogen (HI) and cosmological parameters using near-term intensity mapping surveys with instruments such as BINGO, MeerKAT, and the SKA, and Stage III and IV optical galaxy surveys. If foregrounds and systematic effects can be controlled - a problem which becomes much easier in cross-correlation - these surveys will provide exquisite measurements of the HI density and bias, as well as measurements of the growth of structure, the angular diameter distance, and the Hubble rate, over a wide range of redshift. We also investigate the possibility of detecting the late time ISW effect using the Planck satellite and forthcoming intensity mapping surveys, finding that a large sky survey with Phase 1 of the SKA can achieve a near optimal detection.

  8. Vectorial nanoscale mapping of optical antenna fields by single molecule dipoles.

    Science.gov (United States)

    Singh, Anshuman; Calbris, Gaëtan; van Hulst, Niek F

    2014-08-13

    Optical nanoantennas confine light on the nanoscale, enabling strong light-matter interactions and ultracompact optical devices. Such confined nanovolumes of light have nonzero field components in all directions (x, y, and z). Unfortunately mapping of the actual nanoscale field vectors has so far remained elusive, though antenna hotspots have been explored by several techniques. In this paper, we present a novel method to probe all three components of the local antenna field. To this end a resonant nanoantenna is fabricated at the vertex of a scanning tip. Next, the nanoantenna is deterministically scanned in close proximity to single fluorescent molecules, whose fixed excitation dipole moment reads out the local field vector. With nanometer molecular resolution, we distinctly map x-, y-, and z-field components of the dipole antenna, i.e. a full vectorial mode map, and show good agreement with full 3D FDTD simulations. Moreover, the fluorescence polarization maps the localized coupling, with emission through the longitudinal antenna mode. Finally, the resonant antenna probe is used for single molecule imaging with 40 nm fwhm response function. The total fluorescence enhancement is 7.6 times, while out-of-plane molecules, almost undetectable in far-field, are made visible by the strong antenna z-field with a fluorescence enhancement up to 100 times. Interestingly, the apparent position of molecules shifts up to 20 nm depending on their orientation. The capability to resolve orientational information on the single molecule level makes the scanning resonant antenna an ideal tool for extreme resolution bioimaging.

  9. Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map.

    Science.gov (United States)

    Kafieh, Raheleh; Rabbani, Hossein; Abramoff, Michael D; Sonka, Milan

    2013-12-01

    Optical coherence tomography (OCT) is a powerful and noninvasive method for retinal imaging. In this paper, we introduce a fast segmentation method based on a new variant of spectral graph theory named diffusion maps. The research is performed on spectral domain (SD) OCT images depicting macular and optic nerve head appearance. The presented approach does not require edge-based image information in localizing most of boundaries and relies on regional image texture. Consequently, the proposed method demonstrates robustness in situations of low image contrast or poor layer-to-layer image gradients. Diffusion mapping applied to 2D and 3D OCT datasets is composed of two steps, one for partitioning the data into important and less important sections, and another one for localization of internal layers. In the first step, the pixels/voxels are grouped in rectangular/cubic sets to form a graph node. The weights of the graph are calculated based on geometric distances between pixels/voxels and differences of their mean intensity. The first diffusion map clusters the data into three parts, the second of which is the area of interest. The other two sections are eliminated from the remaining calculations. In the second step, the remaining area is subjected to another diffusion map assessment and the internal layers are localized based on their textural similarities. The proposed method was tested on 23 datasets from two patient groups (glaucoma and normals). The mean unsigned border positioning errors (mean ± SD) was 8.52 ± 3.13 and 7.56 ± 2.95 μm for the 2D and 3D methods, respectively.

  10. Quantitative analysis of the Stratus optical coherence tomography fast macular thickness map reports

    Directory of Open Access Journals (Sweden)

    Domalpally Amitha

    2010-01-01

    Full Text Available The cross sectional optical coherence tomography images have an important role in evaluating retinal diseases. The reports generated by the Stratus fast macular thickness scan protocol are useful for both clinical and research purposes. The centerpoint thickness is an important outcome measure for many therapeutic trials related to macular disease. The data is susceptible to artifacts such as decentration and boundary line errors and could be potentially erroneous. An understanding of how the data is generated is essential before utilizing the data. This article describes the interpretation of the fast macular thickness map report, assessment of the quality of an optical coherence tomography image and identification of the artifacts that could influence the numeric data.

  11. Coupling field maps of combined function bending magnets to linear optics for the SESAME storage ring

    CERN Document Server

    Milanese, A

    2013-01-01

    This note provides several analyses of the combined function bending magnets of the SESAME storage ring. The objective is to develop tools to couple the magnetic design to the linear optics specifications. Such tools can be used to carry out a 3D field optimization, at the design phase and following magnetic measurements, in particular in order to fine tune the end shims on the poles. The analyses take as input field maps on the midplane, which are then processed in different ways to obtain linear transfer matrices for the optics, in the horizontal and vertical planes. Some peculiarities of this kind of magnet are also highlighted, for example, the slight variation of gradient along the arc. For convenience, the relative codes and scripts are included in the appendix.

  12. Distributed multi-hypothesis coding of depth maps using texture motion information and optical flow

    DEFF Research Database (Denmark)

    Salmistraro, Matteo; Zamarin, Marco; Rakêt, Lars Lau

    2013-01-01

    Distributed Video Coding (DVC) is a video coding paradigm allowing a shift of complexity from the encoder to the decoder. Depth maps are images enabling the calculation of the distance of an object from the camera, which can be used in multiview coding in order to generate virtual views, but also...... information, a block-based and an optical flow-based methods are employed. Finally we fuse the proposed Side Informations using a multi-hypothesis DVC decoder, which allows us to exploit the strengths of all the proposed methods at the same time....

  13. APPLYING PRINCIPAL COMPONENT ANALYSIS, MULTILAYER PERCEPTRON AND SELF-ORGANIZING MAPS FOR OPTICAL CHARACTER RECOGNITION

    Directory of Open Access Journals (Sweden)

    Khuat Thanh Tung

    2016-11-01

    Full Text Available Optical Character Recognition plays an important role in data storage and data mining when the number of documents stored as images is increasing. It is expected to find the ways to convert images of typewritten or printed text into machine-encoded text effectively in order to support for the process of information handling effectively. In this paper, therefore, the techniques which are being used to convert image into editable text in the computer such as principal component analysis, multilayer perceptron network, self-organizing maps, and improved multilayer neural network using principal component analysis are experimented. The obtained results indicated the effectiveness and feasibility of the proposed methods.

  14. Factors influencing the structure and shape of stenotic and regurgitant jets: an in vitro investigation using Doppler color flow mapping and optical flow visualization.

    Science.gov (United States)

    Krabill, K A; Sung, H W; Tamura, T; Chung, K J; Yoganathan, A P; Sahn, D J

    1989-06-01

    To evaluate factors influencing the structure and shape of stenotic and regurgitant jets, Doppler color flow mapping and optical flow visualization studies were performed with use of a syringe model with a constant rate of ejection to simulate jets of valvular regurgitation and a pulsatile flow model of the right heart chambers to simulate jets of mild, moderate and severe valvular pulmonary stenosis. Ink-(0 to 40%) glycerol-water jets (viscosity 1 to 3.5 centiPoise) were produced by injecting the fluid at a constant rate into a 10 gallon rectangular reservoir of the same still fluid through 1.4 and 3.4 mm needles. The Doppler color flow scanners imaged the laminar jet length within 3 mm of actual jet length (2 to 6 cm) and the jet width within 2 to 3 mm of the actual jet width. Jet flows with Reynolds numbers ranging from 230 to 1,200 injected into still fluid yielded jet length/width ratios that decreased with increasing Reynolds numbers and leveled off to a length/width ratio of 5-6:1 at a Reynolds number near 600. When the fluid reservoir was swirled to better mimic the effect of flow entering the same cardiac chamber from a second source, the jets showed diminution of the jet length/width ratio and a clearly defined zone of turbulence. Studies of the pulsatile flow model were performed at cardiac outputs of 1 to 6 liters/min for the normal and each stenotic valve. Mild stenosis had an orifice area of 2.8 cm2, moderate stenosis an area of 1.0 cm2 and severe stenosis an area of 0.5 cm2. Laminar jet length represented the length of the total jet, which had a symmetric width and was measured from the valve opening to a region where the jet exhibited a spray effect. Laminar jet lengths (0.2 to 1.1 cm) were imaged by Doppler color flow mapping and optical visualization only in the moderate and severely stenotic valves and only at flows less than or equal to 3 liters/min (mean Reynolds numbers less than or equal to 3,470). Beyond this flow rate the jets exhibited a

  15. SYNERGY OF OPTICAL AND SAR DATA FOR MAPPING AND MONITORING MANGROVES

    Directory of Open Access Journals (Sweden)

    A. K. Monzon

    2016-06-01

    Full Text Available Quantitative information on mangrove cover extents is essential in producing relevant resource management plans and conservation strategies. In the Philippines, mangrove rehabilitation was made a priority in relation to disaster risk response and mitigation following the calamities in the coastal communities during typhoon Haiyan/Yolanda; hence, baseline information on the extent of remaining mangrove cover was essential for effective site interventions. Although mangrove cover maps for the country already exists, analysis of mangrove cover changes were limited to the application of fixed annual deforestation rates due to the challenge of acquiring consistent temporal cloud-free optical satellite data over large landscapes. This study presents an initial analysis of SAR and optical imagery combined with field-based observations for detecting mangrove cover extent and changes through a straightforward graphical approach. The analysis is part of a larger study evaluating the synergistic use of time-series L-band SAR and optical data for mapping and monitoring of mangroves. Image segmentation was implemented on the 25-meter ALOS/PALSAR image mosaics, in which the generated objects were subjected to statistical analysis using the software R. In combination with selected Landsat bands, the class statistics from the image bands were used to generate decision trees and thresholds for the hierarchical image classification. The results were compared with global mangrove cover dataset and validated using collected ground truth data. This study developed an integrated replicable approach for analyzing future radar and optical datasets, essential in national level mangrove cover change monitoring and assessment for long-term conservation targets and strategies.

  16. Mapping Winter Wheat with Multi-Temporal SAR and Optical Images in an Urban Agricultural Region

    Directory of Open Access Journals (Sweden)

    Tao Zhou

    2017-05-01

    Full Text Available Winter wheat is the second largest food crop in China. It is important to obtain reliable winter wheat acreage to guarantee the food security for the most populous country in the world. This paper focuses on assessing the feasibility of in-season winter wheat mapping and investigating potential classification improvement by using SAR (Synthetic Aperture Radar images, optical images, and the integration of both types of data in urban agricultural regions with complex planting structures in Southern China. Both SAR (Sentinel-1A and optical (Landsat-8 data were acquired, and classification using different combinations of Sentinel-1A-derived information and optical images was performed using a support vector machine (SVM and a random forest (RF method. The interference coherence and texture images were obtained and used to assess the effect of adding them to the backscatter intensity images on the classification accuracy. The results showed that the use of four Sentinel-1A images acquired before the jointing period of winter wheat can provide satisfactory winter wheat classification accuracy, with an F1 measure of 87.89%. The combination of SAR and optical images for winter wheat mapping achieved the best F1 measure–up to 98.06%. The SVM was superior to RF in terms of the overall accuracy and the kappa coefficient, and was faster than RF, while the RF classifier was slightly better than SVM in terms of the F1 measure. In addition, the classification accuracy can be effectively improved by adding the texture and coherence images to the backscatter intensity data.

  17. Synergy of Optical and SAR Data for Mapping and Monitoring Mangroves

    Science.gov (United States)

    Monzon, A. K.; Reyes, S. R.; Veridiano, R. K.; Tumaneng, R.; De Alban, J. D.

    2016-06-01

    Quantitative information on mangrove cover extents is essential in producing relevant resource management plans and conservation strategies. In the Philippines, mangrove rehabilitation was made a priority in relation to disaster risk response and mitigation following the calamities in the coastal communities during typhoon Haiyan/Yolanda; hence, baseline information on the extent of remaining mangrove cover was essential for effective site interventions. Although mangrove cover maps for the country already exists, analysis of mangrove cover changes were limited to the application of fixed annual deforestation rates due to the challenge of acquiring consistent temporal cloud-free optical satellite data over large landscapes. This study presents an initial analysis of SAR and optical imagery combined with field-based observations for detecting mangrove cover extent and changes through a straightforward graphical approach. The analysis is part of a larger study evaluating the synergistic use of time-series L-band SAR and optical data for mapping and monitoring of mangroves. Image segmentation was implemented on the 25-meter ALOS/PALSAR image mosaics, in which the generated objects were subjected to statistical analysis using the software R. In combination with selected Landsat bands, the class statistics from the image bands were used to generate decision trees and thresholds for the hierarchical image classification. The results were compared with global mangrove cover dataset and validated using collected ground truth data. This study developed an integrated replicable approach for analyzing future radar and optical datasets, essential in national level mangrove cover change monitoring and assessment for long-term conservation targets and strategies.

  18. Space-time-wavelength mapping: a new approach for electronic control of optical tweezers

    CERN Document Server

    Rahman, Shah; Zhao, Qiancheng; Atasever, Tuva; Boyraz, Ozdal

    2015-01-01

    We present a new approach for electronic control of optical tweezers. The key technique, called 'space-time-wavelength mapping', involves time-domain modulation which is translated onto spatial domain by diffraction and enables direct control of location and polarity of force hot-spots created by Lorentz force (gradient force). In this study 150 fs optical pulses are dispersed in time and space to achieve a focused elliptical beam that is ~20 {\\mu}m long and ~2 {\\mu}m wide. In order to manipulate the intensity gradient along the beam at the focal spot, we use an electro-optic modulator to modulate power spectral distribution of the femtosecond beam after temporal dispersion. The electro-optic modulator is supplied with a chosen RF waveform that dictates the manipulation of the power spectral distribution. By choosing the appropriate RF waveform, it is possible to create force fields for cell stretching and compression as well as multiple hot spots (of > 200 pN force) for attractive or repulsive forces. We pre...

  19. Transverse phase space mapping of relativistic electron beams using optical transition radiation

    Directory of Open Access Journals (Sweden)

    G. P. Le Sage

    1999-12-01

    Full Text Available Optical transition radiation (OTR has proven to be a versatile and effective diagnostic for measuring the profile, divergence, and emittance of relativistic electron beams with a wide range of parameters. Diagnosis of the divergence of modern high brightness beams is especially well suited to OTR interference (OTRI techniques, where multiple dielectric or metal foils are used to generate a spatially coherent interference pattern. Theoretical analysis of measured OTR and OTRI patterns allows precise measurement of electron beam emittance characteristics. Here we describe an extension of this technique to allow mapping of divergence characteristics as a function of transverse coordinates within a measured beam. We present the first experimental analysis of the transverse phase space of an electron beam using all optical techniques. Comparing an optically masked portion of the beam to the entire beam, we measure different angular spread and average direction of the particles. Direct measurement of the phase-space ellipse tilt angle has been demonstrated using this optical masking technique.

  20. Non-contact left ventricular endocardial mapping for cardiac resynchronisation therapy: a “slow conduction” towards the fast solution

    Science.gov (United States)

    Bella, P Della; Carbucicchio, C

    2004-01-01

    Cardiac resynchronisation therapy can help to improve left ventricular function in patients with heart failure, but only if those regions of myocardium which are mostly compromised by electromechanical desynchronisation can be identified and effectively stimulated PMID:15084532

  1. Non-contact left ventricular endocardial mapping for cardiac resynchronisation therapy: a "slow conduction" towards the fast solution.

    Science.gov (United States)

    Della Bella, P; Carbucicchio, C

    2004-05-01

    Cardiac resynchronisation therapy can help to improve left ventricular function in patients with heart failure, but only if those regions of myocardium which are mostly compromised by electromechanical desynchronisation can be identified and effectively stimulated.

  2. Optical spectral index - luminosity relation for the 17 mapped Palomar-Green quasars

    CERN Document Server

    Zhang, XueGuang

    2013-01-01

    In this paper, the optical spectra index - luminosity relationship is checked for the well-known 17 individual mapped QSOs, in order to give one more clearer conclusion on the so far conflicting dependence of the spectral index on the luminosity for AGN. Different from the global relationships based on the color difference (photometry parameters) for samples of AGN, the more reliable relationship is determined for the multi-epoch observed individual mapped QSOs with no contamination from the host galaxies, the line variabilities and the much different central properties. The final confirmed results are as follows. (1): No strong dependence of the optical spectral index on the continuum luminosity can be found for all the 17 QSOs, besides two objects (PG 0026 and PG 1613) having some weak trends (with $3\\sigma$ confidence level) for the relationship. In other words, the common sense 'AGNs get bluer when they get brighter' is not so common. (2): There are much different damped intrinsic variability time scales ...

  3. Computational optical palpation: micro-scale force mapping using finite-element methods (Conference Presentation)

    Science.gov (United States)

    Wijesinghe, Philip; Sampson, David D.; Kennedy, Brendan F.

    2016-03-01

    Accurate quantification of forces, applied to, or generated by, tissue, is key to understanding many biomechanical processes, fabricating engineered tissues, and diagnosing diseases. Many techniques have been employed to measure forces; in particular, tactile imaging - developed to spatially map palpation-mimicking forces - has shown potential in improving the diagnosis of cancer on the macro-scale. However, tactile imaging often involves the use of discrete force sensors, such as capacitive or piezoelectric sensors, whose spatial resolution is often limited to 1-2 mm. Our group has previously presented a type of tactile imaging, termed optical palpation, in which the change in thickness of a compliant layer in contact with tissue is measured using optical coherence tomography, and surface forces are extracted, with a micro-scale spatial resolution, using a one-dimensional spring model. We have also recently combined optical palpation with compression optical coherence elastography (OCE) to quantify stiffness. A main limitation of this work, however, is that a one-dimensional spring model is insufficient in describing the deformation of mechanically heterogeneous tissue with uneven boundaries, generating significant inaccuracies in measured forces. Here, we present a computational, finite-element method, which we term computational optical palpation. In this technique, by knowing the non-linear mechanical properties of the layer, and from only the axial component of displacement measured by phase-sensitive OCE, we can estimate, not only the axial forces, but the three-dimensional traction forces at the layer-tissue interface. We use a non-linear, three-dimensional model of deformation, which greatly increases the ability to accurately measure force and stiffness in complex tissues.

  4. Global error maps of aerosol optical properties: an error propagation analysis

    Directory of Open Access Journals (Sweden)

    K. Tsigaridis

    2008-08-01

    Full Text Available Among the numerous atmospheric constituents, aerosols play a unique role on climate, due to their scattering and absorbing capabilities, visibility degradation and their effect on incoming and outgoing radiation. The most important optical properties are the aerosol optical depth (AOD, the asymmetry parameter (g and the single scattering albedo (SSA. Uncertainties in aerosol microphysics in global models, which in turn affect their optical properties, propagate to uncertainties on the effect of aerosols on climate. This study aims to estimate the uncertainty of AOD, g and SSA attributable to the aerosol representation in models, namely mixing state, aerosol size and aerosol associated water. As a reference, the monthly mean output of the general circulation model LMDz-INCA from the international comparison exercise AEROCOM B was used. For the optical properties calculations, aerosols were considered either externally mixed, homogeneously internally mixed or coated spheres. The radius was allowed to vary by ±20% (with 2% intervals and the aerosol water content by ±50% (with 5% intervals with respect to the reference model output. All of these possible combinations were assumed to be equally likely and the optical properties were calculated for each one of them. A probability density function (PDF was constructed at each model grid point for AOD, g and SSA. From this PDF, the 1σ and 2σ uncertainties of the AOD, g and SSA were calculated and are available as global maps for each month. For the range of the cases studied, we derive a maximum 2σ uncertainty range in AOD of 70%, while for g and SSA the maxima reach 18% and 28% respectively. The mixing state was calculated to be important, with the aerosol absorption and SSA being the most affected properties when absorbing aerosols are present.

  5. Towards mid-infrared fiber-optic devices and systems for sensing, mapping and imaging

    Science.gov (United States)

    Jayasuriya, D.; Wilson, B.; Furniss, D.; Tang, Z.; Barney, E.; Benson, T. M.; Seddon, A. B.

    2016-03-01

    Novel chalcogenide glass-based fiber opens up the mid-infrared (MIR) range for real-time monitoring and control in medical diagnostics and chemical processing. Fibers with long wavelength cut-off are of interest here. Sulfide, selenide and telluride based chalcogenide glass are candidates, but there are differences in their glass forming region, thermal stability and in the short and long wavelength cut-off positions. In general sulfide and selenide glasses have greater glass stability, but shorter long-wavelength cut-off edge, compared to telluride glasses; selenide-telluride glasses are a good compromise. Low optical loss selenide-telluride based long wavelength fibers could play a substantial role in improving medical diagnostic systems, chemical sensing, and processing, and in security and agriculture. For biological tissue, the molecular finger print lies between ~3-15 μm wavelengths in the MIR region. Using MIR spectral mapping, information about diseased tissue may be obtained with improved accuracy and in vivo using bright broadband MIR super-continuum generation (SCG) fiber sources and low optical loss fiber for routing. The Ge-As-Se-Te chalcogenide glass system is a potential candidate for both MIR SCG and passive-routing fiber, with good thermal stability, wide intrinsic transparency from ~1.5 to 20 μm and low phonon energy. This paper investigates Ge-As-Se-Te glass system pairs for developing high numerical aperture (NA) small-core, step-index optical fiber for MIR SCG and low NA passive step-index optical fiber for an in vivo fiber probe. Control of fiber geometry of small-core optical fiber and methods of producing the glass material are also included in this paper.

  6. Transmission Maps of the ACIS UV/Optical Blocking Filter Flight Units

    Science.gov (United States)

    Townsley, L. K.; Broos, P. S.; Mackay, J. F.

    1996-05-01

    The AXAF CCD Imaging Spectrometer (ACIS) employs filters made of Lexan coated on both sides with aluminum to block optical and UV light, so that the CCDs see only X-radiation from astronomical targets. These filters must be characterized by spatially mapping their transmission at various astrophysically and instrumentally important energies. The Penn State University ACIS team determined that a synchrotron, where a variety of well-determined X-ray energies is available, would provide the best calibration. We measured engineering grade UV/optical blocking filters at the University of Wisconsin Synchrotron Radiation Center (SRC) in June and October 1995, modified the hardware and software on a dry run in January 1996, and just completed the calibration of the flight filters in March 1996. The Multilayer Beamline at the SRC was used for these measurements because it can access several energies important to the calibration and its built-in, computer-controlled x-z stage allows us to map the filters automatically with user-specified spatial resolution. These transmission maps formed the basis for choosing the actual flight filter units from the set of filters manufactured with flight specifications. We obtained transmission measurements at five energies in the range 200-2000 eV. We present here best-fit models of the filter transmission based on these data points. Better than one percent accuracy in transmission as a function of energy was achieved over the entire filter area on scales corresponding to thirty arcseconds in the focal plane of AXAF (the amplitude of the planned aspect dither of the spacecraft). The pair of filters (one for the Imaging array and one for the Spectroscopy array) selected for flight will be installed on the ACIS focal plane in early summer.

  7. Optical imaging of breast tumor through temporal log-slope difference mappings.

    Science.gov (United States)

    Guo, Zhixiong; Kan Wan, Siew; August, David A; Ying, Jinpin; Dunn, Stanley M; Semmlow, John L

    2006-02-01

    A novel optical temporal log-slope difference mapping approach is proposed for cancerous breast tumor detection. In this method, target tissues are illuminated by near-infrared (700-1000 nm) ultrashort laser pulses from various surface source points, and backscattered time-resolved light signals are collected at the same surface points. By analyzing the log-slopes of decaying signals over all points on the source-detection grid, a log-slope distribution on the surface is obtained. After administration of absorption contrast agents, the presence of cancerous tumors increases the decaying steepness of the transient signals. The mapping of log-slope difference between native tissue and absorption-enhanced cancerous tissue indicates the location and projection of tumors on the detection surface. In this paper, we examine this method in the detection of breast tumors in two model tissue phantoms through computer simulation. The first model has a spherical tumor of 6mm in diameter embedded at the tissue center. The second model is a large tissue phantom embedded with a non-centered spherical tumor 8mm in diameter. Monte Carlo methods were employed to simulate the light transport and signal measurement. It is shown that the tumor in both the tissue models will be accurately projected on the detection surface by the proposed log-slope difference mapping method. The image processing is very fast and does not require any inverse optimization in image reconstruction.

  8. Spatio-temporal characteristics of inhibition mapped by optical stimulation in mouse olfactory bulb

    Directory of Open Access Journals (Sweden)

    Alexander eLehmann

    2016-03-01

    Full Text Available Mitral and tufted cells (MTCs of the mammalian olfactory bulb (OB are connected via dendrodendritic synapses with inhibitory interneurons in the external plexiform layer. The range, spatial layout and temporal properties of inhibitory interactions between MTCs mediated by inhibitory interneurons remain unclear. Therefore we tested for inhibitory interactions using an optogenetic approach. We optically stimulated MTCs expressing channelrhodopsin-2 in transgenic mice, while recording from individual MTCs in juxtacellular or whole-cell configuration in vivo. We used a spatial noise stimulus for mapping interactions between MTCs belonging to different glomeruli in the dorsal bulb. Analyzing firing responses of MTCs to the stimulus, we did not find robust lateral inhibitory effects that were spatially specific. However, analysis of sub-threshold changes in the membrane potential revealed evidence for inhibitory interactions between MTCs that belong to different glomerular units. These lateral inhibitory effects were short-lived and spatially specific. MTC response maps showed hyperpolarizing effects radially extending over more than 5 glomerular diameters. The inhibitory maps exhibited non-symmetrical yet distance-dependent characteristics.

  9. Immune mapping of the peripheral part of the visual analyzer and optic nerve

    Directory of Open Access Journals (Sweden)

    V. G. Likhvantseva

    2014-01-01

    Full Text Available Aim. To perform immune mapping of the peripheral part of visual analyzer and optic nerve in order to identify potential antigenic targets of autoimmune attack. Methods. Eyes enucleated for terminal painful glaucoma (n = 30 were studied. Immunohistochemistry (IHC was performed on paraffin-embedded sections of isolated retina and optic nerve using a broad panel of antibodies, i.e., monoclonal murine anti-MBP (myelin basic protein antibodies, polyclonal rabbit anti-alpha fodrin antibodies, monoclonal murine anti-NSE2 (neuron-specific enolase antibodies, monoclonal murine anti-GFAP (glial fibrillary acidic protein, and polyclonal rabbit anti-S100 antibodies. IHC reaction was visualized using Mouse and Rabbit Specific HRP / AEC Detection IHC Kit. IHC reaction without primary antibodies included was a negative control. IHC reaction was considered as follows: negative — no specific cellular staining or less than 10 % of cells are stained; mild — 10‑30 % of cells are stained (+; moderate — 30‑75 % of cells are stained (++; marked — more than 75 % of cells are stained (+++; overexpression — 100 % of cells intensively express markers. Additionally, staining intensity was considered as mild (+1, moderate (+2, strong (+3 and intense (+4.Results. Immune mapping with a broad panel of monoclonal antibodies identified ocular structures which were stained with IHC markers. Retina was stained with almost all markers of neural differentiation (i.e., antibodies against NSE, GFAP, S100, and α-fodrin excepting anti-MBP autoantibodies. IHC reaction intensity in retinal layers and structures varied and depended on markers. Moderate (2+ staining with antibodies against MBP, NSE, GFAP, and S100 and marked (3+ staining with antibodies against alpha-fodrin was detected in the cytoplasm of optic nerve glia.Conclusion. Complete labelling of retina structures was performed. As a result, IHC profiles of retinal neurons, optic nerve axons

  10. 3D mapping of elastic modulus using shear wave optical micro-elastography

    Science.gov (United States)

    Zhu, Jiang; Qi, Li; Miao, Yusi; Ma, Teng; Dai, Cuixia; Qu, Yueqiao; He, Youmin; Gao, Yiwei; Zhou, Qifa; Chen, Zhongping

    2016-10-01

    Elastography provides a powerful tool for histopathological identification and clinical diagnosis based on information from tissue stiffness. Benefiting from high resolution, three-dimensional (3D), and noninvasive optical coherence tomography (OCT), optical micro-elastography has the ability to determine elastic properties with a resolution of ~10 μm in a 3D specimen. The shear wave velocity measurement can be used to quantify the elastic modulus. However, in current methods, shear waves are measured near the surface with an interference of surface waves. In this study, we developed acoustic radiation force (ARF) orthogonal excitation optical coherence elastography (ARFOE-OCE) to visualize shear waves in 3D. This method uses acoustic force perpendicular to the OCT beam to excite shear waves in internal specimens and uses Doppler variance method to visualize shear wave propagation in 3D. The measured propagation of shear waves agrees well with the simulation results obtained from finite element analysis (FEA). Orthogonal acoustic excitation allows this method to measure the shear modulus in a deeper specimen which extends the elasticity measurement range beyond the OCT imaging depth. The results show that the ARFOE-OCE system has the ability to noninvasively determine the 3D elastic map.

  11. Ultrasensitive, label-free detection of cardiac biomarkers with optical SIS sensor.

    Science.gov (United States)

    Diware, Mangesh S; Cho, Hyun Mo; Chegal, Won; Cho, Yong Jai; Kim, Dong Soo; O, Sang Won; Kim, Kyeong-Suk; Paek, Se-Hwan

    2017-01-15

    Acute myocardial infarction (MI) is the leading cause of high mortality and morbidity rate worldwide, early and accurate diagnosis can increase the chances of survival. In this work, we report a simple, ultrasensitive, label-free, and high-throughput solution immersed silicon (SIS) immunosensor based on non-reflection condition (NRC) for p-polarized wave for early diagnosis of MI. SIS sensor chips are just a thin dielectric polymer layer on the silicon surface, which can be functionalized for specific application. At NRC, SIS sensors are extremely sensitive to the growing thickness of a bio-layer on the sensor surface while independent of refractive index change of the surrounding medium. Therefore, SIS signal is free from thermal noise, unlike surface plasmon resonance based sensor. Also, there is no need of reference signal which facilitates fast and accurate interaction measurement. Here, SIS technology is applied to tackle two issues in MI diagnosis: high sensitivity with the direct assay and the ability to measure in human serum. Myoglobin, creatine kinase-MB, and cardiac troponin I (cTnI) proteins were used as the MI biomarkers. We were able to measure over a broad concentration range with the detection limit of 5 and 10pg/ml for cTnI in PBS and blood serum, respectively. The response time is about 5min. This novel technique is a suitable candidate for cost effective point-of-care application.

  12. Subclinical keratoconus detection by pattern analysis of corneal and epithelial thickness maps with optical coherence tomography.

    Science.gov (United States)

    Li, Yan; Chamberlain, Winston; Tan, Ou; Brass, Robert; Weiss, Jack L; Huang, David

    2016-02-01

    To screen for subclinical keratoconus by analyzing corneal, epithelial, and stromal thickness map patterns with Fourier-domain optical coherence tomography (OCT). Four centers in the United States. Cross-sectional observational study. Eyes of normal subjects, subclinical keratoconus eyes, and the topographically normal eye of a unilateral keratoconus patient were studied. Corneas were scanned using a 26,000 Hz Fourier-domain OCT system (RTVue). Normal subjects were divided into training and evaluation groups. Corneal, epithelial, and stromal thickness maps and derived diagnostic indices, including pattern standard deviation (PSD) variables and pachymetric map-based keratoconus risk scores, were calculated from the OCT data. Area under the receiver operating characteristic curve (AUC) analysis was used to evaluate the diagnostic accuracy of the indices. The study comprised 150 eyes of 83 normal subjects, 50 subclinical keratoconus eyes of 32 patients, and 1 topographically normal eye of a unilateral keratoconus patient. Subclinical keratoconus was characterized by inferotemporal thinning of the cornea, epithelium, and stroma. The PSD values for corneal (P keratoconus risk score (AUC = 0.735). High-resolution Fourier-domain OCT could map corneal, epithelial, and stromal thicknesses. Corneal and sublayer thickness changes in subclinical keratoconus could be detected with high accuracy using PSD variables. These new diagnostic variables might be useful in the detection of early keratoconus. Oregon Health and Science University (OHSU) and Drs. Li, Tan, and Huang have a significant financial interest in Optovue, Inc. These potential conflicts have been reviewed and managed by OHSU. Dr. Brass receives research grants from Optovue, Inc. Drs. Chamberlain and Weiss have no financial or proprietary interest in any material or method mentioned. Copyright © 2016 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

  13. Optical coherence tomography provides an ability to assess mechanical property of cardiac wall of developing outflow tract in embryonic heart in vivo

    Science.gov (United States)

    Li, Peng; Wang, Ruikang K.

    2012-12-01

    Knowledge of the biomechanical/elastic property of the cardiac wall is of fundamental importance in improving our understanding of cardiac development, particularly the interaction between the wall dynamics and hemodynamics in the developing outflow tract (OFT). We describe a method that employs optical coherence tomography (OCT) as a means to noninvasively measure the local elastic property of the cardiac wall in vivo. The method uses a time-lapse sequence of OCT images that represent the dynamic behavior of the OFT longitudinal section to calculate the regional wall pulse wave velocity (PWV), upon which the Young's modulus of the cardiac wall is deduced by the use of the Moens-Korteweg equation. The experimental results show that the foot-to-foot PWV ranges from 3.2 to 6.6 mm/s with a mean of 4.7 mm/s, and the averaged Young's modulus is 0.36 Pa, both of which are comparable to the documented values of stage HH17 atrioventricular canal tissue. The proposed method that provides the quantitative mechanical assessment may play a significant role in the understanding of the cardiac development.

  14. Mapping Global Forest Aboveground Biomass with Spaceborne LiDAR, Optical Imagery, and Forest Inventory Data

    Directory of Open Access Journals (Sweden)

    Tianyu Hu

    2016-07-01

    Full Text Available As a large carbon pool, global forest ecosystems are a critical component of the global carbon cycle. Accurate estimations of global forest aboveground biomass (AGB can improve the understanding of global carbon dynamics and help to quantify anthropogenic carbon emissions. Light detection and ranging (LiDAR techniques have been proven that can accurately capture both horizontal and vertical forest structures and increase the accuracy of forest AGB estimation. In this study, we mapped the global forest AGB density at a 1-km resolution through the integration of ground inventory data, optical imagery, Geoscience Laser Altimeter System/Ice, Cloud, and Land Elevation Satellite data, climate surfaces, and topographic data. Over 4000 ground inventory records were collected from published literatures to train the forest AGB estimation model and validate the resulting global forest AGB product. Our wall-to-wall global forest AGB map showed that the global forest AGB density was 210.09 Mg/ha on average, with a standard deviation of 109.31 Mg/ha. At the continental level, Africa (333.34 ± 63.80 Mg/ha and South America (301.68 ± 67.43 Mg/ha had higher AGB density. The AGB density in Asia, North America and Europe were 172.28 ± 94.75, 166.48 ± 84.97, and 132.97 ± 50.70 Mg/ha, respectively. The wall-to-wall forest AGB map was evaluated at plot level using independent plot measurements. The adjusted coefficient of determination (R2 and root-mean-square error (RMSE between our predicted results and the validation plots were 0.56 and 87.53 Mg/ha, respectively. At the ecological zone level, the R2 and RMSE between our map and Intergovernmental Panel on Climate Change suggested values were 0.56 and 101.21 Mg/ha, respectively. Moreover, a comprehensive comparison was also conducted between our forest AGB map and other published regional AGB products. Overall, our forest AGB map showed good agreements with these regional AGB products, but some of the regional

  15. Quantification of a cardiac biomarker in human serum using extraordinary optical transmission (EOT.

    Directory of Open Access Journals (Sweden)

    Tao Ding

    Full Text Available Nanoimprinting lithography (NIL is a manufacturing process that can produce macroscale surface areas with nanoscale features. In this paper, this technique is used to solve three fundamental issues for the application of localized surface plasmonic resonance (LSPR in practical clinical measurements: assay sensitivity, chip-to-chip variance, and the ability to perform assays in human serum. Using NIL, arrays of 140 nm square features were fabricated on a sensing area of 1.5 mm x 1.5 mm with low cost. The high reproducibility of NIL allowed for the use of a one-chip, one-measurement approach with 12 individually manufactured surfaces with minimal chip-to-chip variations. To better approximate a real world setting, all chips were modified with a biocompatible, multi-component monolayer and inter-chip variability was assessed by measuring a bioanalyte standard (2.5-75 ng/ml in the presence of a complex biofluid, human serum. In this setting, nanoimprinted LSPR chips were able to provide sufficient characteristics for a 'low-tech' approach to laboratory-based bioanalyte measurement, including: 1 sufficient size to interface with a common laboratory light source and detector without the need for a microscope, 2 high sensitivity in serum with a cardiac troponin limit of detection of 0.55 ng/ml, and 3 very low variability in chip manufacturing to produce a figure of merit (FOM of 10.5. These findings drive LSPR closer to technical comparability with ELISA-based assays while preserving the unique particularities of a LSPR based sensor, suitability for multiplexing and miniaturization, and point-of-care detections.

  16. Quantification of a cardiac biomarker in human serum using extraordinary optical transmission (EOT).

    Science.gov (United States)

    Ding, Tao; Hong, Minghui; Richards, A Mark; Wong, Ten It; Zhou, Xiaodong; Drum, Chester Lee

    2015-01-01

    Nanoimprinting lithography (NIL) is a manufacturing process that can produce macroscale surface areas with nanoscale features. In this paper, this technique is used to solve three fundamental issues for the application of localized surface plasmonic resonance (LSPR) in practical clinical measurements: assay sensitivity, chip-to-chip variance, and the ability to perform assays in human serum. Using NIL, arrays of 140 nm square features were fabricated on a sensing area of 1.5 mm x 1.5 mm with low cost. The high reproducibility of NIL allowed for the use of a one-chip, one-measurement approach with 12 individually manufactured surfaces with minimal chip-to-chip variations. To better approximate a real world setting, all chips were modified with a biocompatible, multi-component monolayer and inter-chip variability was assessed by measuring a bioanalyte standard (2.5-75 ng/ml) in the presence of a complex biofluid, human serum. In this setting, nanoimprinted LSPR chips were able to provide sufficient characteristics for a 'low-tech' approach to laboratory-based bioanalyte measurement, including: 1) sufficient size to interface with a common laboratory light source and detector without the need for a microscope, 2) high sensitivity in serum with a cardiac troponin limit of detection of 0.55 ng/ml, and 3) very low variability in chip manufacturing to produce a figure of merit (FOM) of 10.5. These findings drive LSPR closer to technical comparability with ELISA-based assays while preserving the unique particularities of a LSPR based sensor, suitability for multiplexing and miniaturization, and point-of-care detections.

  17. Mapping Sentinel Lymph Node Metastasis by Dual-probe Optical Imaging

    Science.gov (United States)

    Yang, Xiangyu; Wang, Zhe; Zhang, Fuwu; Zhu, Guizhi; Song, Jibin; Teng, Gao-Jun; Niu, Gang; Chen, Xiaoyuan

    2017-01-01

    Purpose: Sentinel lymph node biopsy (SLNB) has emerged as the preferred standard procedure in patients with breast cancer, melanoma and other types of cancer. Herein, we developed a method to intra-operatively map SLNs and differentiate tumor metastases within SLNs at the same time, with the aim to provide more accurate and real-time intraoperative guidance. Experimental Design: Hyaluronic acid (HA), a ligand of lymphatic vessel endothelial hyaluronan receptor (LYVE)-1, is employed as a SLN mapping agent after being conjugated with a near-infrared fluorophore (Cy5.5). Different sized HAs (5, 10 and 20K) were tested in normal mice and mice with localized inflammation to optimize LN retention time and signal to background ratio. Cetuximab, an antibody against epidermal growth factor receptor (EGFR), and trastuzumab, an antibody against human epidermal growth factor receptor 2 (HER2), were labeled with near-infrared fluorophore (IRDye800) for detecting metastatic tumors. LN metastasis model was developed by hock injection of firefly luciferase engineered human head neck squamous carcinoma cancer UM-SCC-22B cells or human ovarian cancer SKOV-3 cells. The metastases within LNs were confirmed by bioluminescence imaging (BLI). IRDye800-Antibodies were intravenously administered 24 h before local administration of Cy5.5-HA. Optical imaging was then performed to identify nodal metastases. Results: Binding of HA with LYVE-1 was confirmed by ELISA and fluorescence staining. HA with a size of 10K was chosen based on the favorable migration and retention profile. After sequential administration of IRDye800-antibodies intravenously and Cy5.5-HA locally to a mouse model with LN metastases and fluorescence optical imaging, partially metastasized LNs were successfully distinguished from un-metastasized LNs and fully tumor occupied LNs, based on the different signal patterns. Conclusions: Fluorophore conjugated HA is a potential lymphatic mapping agent for SLNB. Dual-tracer imaging

  18. Space Telescope and Optical Reverberation Mapping Project. III. Optical Continuum Emission and Broad-Band Time Delays in NGC 5548

    CERN Document Server

    Fausnaugh, M M; Barth, A J; Bentz, M C; Bottorff, M C; Carini, M T; Croxall, K V; De Rosa, G; Goad, M R; Horne, Keith; Joner, M D; Kaspi, S; Kim, M; Klimanov, S A; Kochanek, C S; Leonard, D C; Netzer, H; Peterson, B M; Schnulle, K; Sergeev, S G; Vestergaard, M; Zheng, W -K; Anderson, M D; Arevalo, P; Bazhaw, C; Borman, G A; Boroson, T A; Brandt, W N; Breeveld, A A; Brewer, B J; Cackett, E M; Crenshaw, D M; Bonta, E Dalla; De Lorenzo-Caceres, A; Dietrich, M; Edelson, R; Efimova, N V; Ely, J; Evans, P A; Filippenko, A V; Flatland, K; Gehrels, N; Geier, S; Gelbord, J M; Gonzalez, L; Gorjian, V; Grier, C J; Grupe, D; Hall, P B; Hicks, S; Horenstein, D; Hutchison, T; Im, M; Jensen, J J; Jones, J; Kaastra, J; Kelly, B C; Kennea, J A; Kim, S C; Korista, K T; Kriss, G A; Larionov, V M; Lee, J C; Lira, P; MacInnis, F; Manne-Nicholas, E R; Mathur, S; McHardy, I M; Montouri, C; Musso, R; Nazarov, S V; Norris, R P; Nousek, J A; Okhmat, D N; Pancoast, A; Papadakis, I; Parks, J R; Pei, L; Pogge, R W; Pott, J -U; Rafter, S E; Rix, H -W; Saylor, D A; Schimoia, J S; Siegel, M; Spencer, M; Starkey, D; Sung, H -I; Teems, K G; Treu, T; Turner, C S; Uttley, P; Villforth, C; Weiss, Y; Woo, J -H; Yan, H; Young, S; Zu, Y

    2015-01-01

    We present ground-based optical photometric monitoring data for NGC 5548, part of an extended multi-wavelength reverberation mapping campaign. The light curves have nearly daily cadence from 2014 January to July in nine filters ($BVRI$ and $ugriz$). Combined with UV data from the $Hubble$ $Space$ $Telescope$ and $Swift$, we confirm significant time delays between the continuum bands as a function of wavelength, extending the wavelength coverage from $1158\\,{\\rm \\AA}$ to the $z$-band ($\\sim\\! 9160\\,{\\rm \\AA}$). We find that the lags at wavelengths longer than the $V$ band are equal to or greater than the lags of high ionization-state emission lines (such as HeII$\\lambda 1640$ and $\\lambda 4686$), suggesting that the continuum emitting source is of a physical size comparable to the inner broad line region. The trend of lag with wavelength is broadly consistent with the prediction for continuum reprocessing by an accretion disk with $\\tau \\propto \\lambda^{4/3}$. However, the lags also imply a disk radius that is...

  19. Genetic and physiologic dissection of the vertebrate cardiac conduction system.

    Directory of Open Access Journals (Sweden)

    Neil C Chi

    2008-05-01

    Full Text Available Vertebrate hearts depend on highly specialized cardiomyocytes that form the cardiac conduction system (CCS to coordinate chamber contraction and drive blood efficiently and unidirectionally throughout the organism. Defects in this specialized wiring system can lead to syncope and sudden cardiac death. Thus, a greater understanding of cardiac conduction development may help to prevent these devastating clinical outcomes. Utilizing a cardiac-specific fluorescent calcium indicator zebrafish transgenic line, Tg(cmlc2:gCaMP(s878, that allows for in vivo optical mapping analysis in intact animals, we identified and analyzed four distinct stages of cardiac conduction development that correspond to cellular and anatomical changes of the developing heart. Additionally, we observed that epigenetic factors, such as hemodynamic flow and contraction, regulate the fast conduction network of this specialized electrical system. To identify novel regulators of the CCS, we designed and performed a new, physiology-based, forward genetic screen and identified for the first time, to our knowledge, 17 conduction-specific mutations. Positional cloning of hobgoblin(s634 revealed that tcf2, a homeobox transcription factor gene involved in mature onset diabetes of the young and familial glomerulocystic kidney disease, also regulates conduction between the atrium and the ventricle. The combination of the Tg(cmlc2:gCaMP(s878 line/in vivo optical mapping technique and characterization of cardiac conduction mutants provides a novel multidisciplinary approach to further understand the molecular determinants of the vertebrate CCS.

  20. Optical gesture sensing and depth mapping technologies for head-mounted displays: an overview

    Science.gov (United States)

    Kress, Bernard; Lee, Johnny

    2013-05-01

    Head Mounted Displays (HMDs), and especially see-through HMDs have gained renewed interest in recent time, and for the first time outside the traditional military and defense realm, due to several high profile consumer electronics companies presenting their products to hit market. Consumer electronics HMDs have quite different requirements and constrains as their military counterparts. Voice comments are the de-facto interface for such devices, but when the voice recognition does not work (not connection to the cloud for example), trackpad and gesture sensing technologies have to be used to communicate information to the device. We review in this paper the various technologies developed today integrating optical gesture sensing in a small footprint, as well as the various related 3d depth mapping sensors.

  1. The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Optical Extension for Neutron Capture Elements

    Science.gov (United States)

    Melendez, Matthew; O'Connell, Julia; Frinchaboy, Peter M.; Donor, John; Cunha, Katia M. L.; Shetrone, Matthew D.; Majewski, Steven R.; Zasowski, Gail; Pinsonneault, Marc H.; Roman-Lopes, Alexandre; Stassun, Keivan G.; APOGEE Team

    2017-01-01

    The Open Cluster Chemical Abundance & Mapping (OCCAM) survey is a systematic survey of Galactic open clusters using data primarily from the SDSS-III/APOGEE-1 survey. However, neutron capture elements are very limited in the IR region covered by APOGEE. In an effort to fully study detailed Galactic chemical evolution, we are conducting a high resolution (R~60,000) spectroscopic abundance analysis of neutron capture elements for OCCAM clusters in the optical regime to complement the APOGEE results. As part of this effort, we present Ba II, La II, Ce II and Eu II results for a few open clusters without previous abundance measurements using data obtained at McDonald Observatory with the 2.1m Otto Struve telescope and Sandiford Echelle Spectrograph.This work is supported by an NSF AAG grant AST-1311835.

  2. Mapping 3D fiber orientation in tissue using dual-angle optical polarization tractography.

    Science.gov (United States)

    Wang, Y; Ravanfar, M; Zhang, K; Duan, D; Yao, G

    2016-10-01

    Optical polarization tractography (OPT) has recently been applied to map fiber organization in the heart, skeletal muscle, and arterial vessel wall with high resolution. The fiber orientation measured in OPT represents the 2D projected fiber angle in a plane that is perpendicular to the incident light. We report here a dual-angle extension of the OPT technology to measure the actual 3D fiber orientation in tissue. This method was first verified by imaging the murine extensor digitorum muscle placed at various known orientations in space. The accuracy of the method was further studied by analyzing the 3D fiber orientation of the mouse tibialis anterior muscle. Finally we showed that dual-angle OPT successfully revealed the unique 3D "arcade" fiber structure in the bovine articular cartilage.

  3. Optical mapping of conduction in early embryonic quail hearts with light-sheet microscopy (Conference Presentation)

    Science.gov (United States)

    Ma, Pei; Gu, Shi; Wang, Yves T.; Jenkins, Michael W.; Rollins, Andrew M.

    2016-03-01

    Optical mapping (OM) using fluorescent voltage-sensitive dyes (VSD) to measure membrane potential is currently the most effective method for electrophysiology studies in early embryonic hearts due to its noninvasiveness and large field-of-view. Conventional OM acquires bright-field images, collecting signals that are integrated in depth and projected onto a 2D plane, not capturing the 3D structure of the sample. Early embryonic hearts, especially at looping stages, have a complicated, tubular geometry. Therefore, conventional OM cannot provide a full picture of the electrical conduction circumferentially around the heart, and may result in incomplete and inaccurate measurements. Here, we demonstrate OM of Hamburger and Hamilton stage 14 embryonic quail hearts using a new commercially-available VSD, Fluovolt, and depth sectioning using a custom built light-sheet microscopy system. Axial and lateral resolution of the system is 14µm and 8µm respectively. For OM imaging, the field-of-view was set to 900µm×900µm to cover the entire heart. 2D over time OM image sets at multiple cross-sections through the looping-stage heart were recorded. The shapes of both atrial and ventricular action potentials acquired were consistent with previous reports using conventional VSD (di-4-ANNEPS). With Fluovolt, signal-to-noise ratio (SNR) is improved significantly by a factor of 2-10 (compared with di-4-ANNEPS) enabling light-sheet OM, which intrinsically has lower SNR due to smaller sampling volumes. Electrophysiologic parameters are rate dependent. Optical pacing was successfully integrated into the system to ensure heart rate consistency. This will also enable accurately gated reconstruction of full four dimensional conduction maps and 3D conduction velocity measurements.

  4. Dimensionality reduction in nonlinear optical datasets via diffusion mapping: case study of short-pulse second harmonic generation

    Science.gov (United States)

    Romanov, Dmitri; Smith, Stanley; Brady, John; Levis, Robert J.

    2008-02-01

    We have studied the application of the diffusion mapping technique to dimensionality reduction and clustering in multidimensional optical datasets. The combinational (input-output) data were obtained by sampling search spaces related to optimization of a nonlinear physical process, short-pulse second harmonic generation. The diffusion mapping technique hierarchically reduces the dimensionality of the data set and unifies the statistics of input (the pulse shape) and output (the integral output intensity) parameters. The information content of the emerging clustered pattern can be optimized by modifying the parameters of the mapping procedure. The low-dimensional pattern captures essential features of the nonlinear process, based on a finite sampling set. In particular, the apparently parabolic two-dimensional projection of this pattern exhibits regular evolution with the increase of higher-intensity data in the sampling set. The basic shape of the pattern and the evolution are relatively insensitive to the size of the sampling set, as well as to the details of the mapping procedure. Moreover, the experimental data sets and the sets produced numerically on the basis of a theoretical model are mapped into patterns of remarkable similarity (as quantified by the similarity of the related quadratic-form coefficients). The diffusion mapping method is robust and capable of predicting higher-intensity points from a set of low-intensity points. With these attractive features, diffusion mapping stands poised to become a helpful statistical tool for preprocessing analysis of vast and multidimensional combinational optical datasets.

  5. Optical mapping of single-molecule human DNA in disposable, mass-produced all-polymer

    DEFF Research Database (Denmark)

    Østergaard, Peter Friis; Lopacinska-Jørgensen, Joanna; Pedersen, Jonas Nyvold

    2015-01-01

    We demonstrate all-polymer injection molded devices for optical mapping of denaturation–renaturation (DR) patterns on long, single DNA-molecules from the human genome. The devices have channels with ultra-low aspect ratio, only 110 nm deep while 20 μm wide, and are superior to the silica devices...... used previously in the field. With these polymer devices, we demonstrate on-chip recording of DR images of DNA-molecules stretched to more than 95% of their contour length. The stretching is done by opposing flows Marie et al (2013 Proc. Natl Acad. Sci. USA 110 4893–8). The performance is validated...... by mapping 20 out of 24 Mbp-long DNA fragments to the human reference genome. We optimized fabrication of the devices to a yield exceeding 95%. This permits a substantial economies-of-scale driven cost-reduction, leading to device costs as low as 3 USD per device, about a factor 70 lower than the cost...

  6. Optical colour maps of Seyfert galaxies; 2, More Seyfert 2s

    CERN Document Server

    Kotilainen, J K

    1998-01-01

    We present optical broad band B-I colour maps of a further sample of 10 Seyfert 2 galaxies. In these bands, the contribution from emission lines to the total flux is small, and hence the images predominantly trace the continuum distribution. As in our earlier colour maps of a sample of Seyferts type 1 and 2, we detect extended blue continuum components in the circumnuclear region of several galaxies. These components are either elongated (in Mkn 533, Mkn 607, Mkn 1066, NGC 5347, NGC 5953 and NGC 7319) or form a double structure across the nucleus (in NGC 5929). They are closely aligned with the radio and emission line axes of these galaxies and probably arise from scattering of nuclear continuum light by extranuclear mirrors. Similar blue elongations (in Mkn 1 and NGC 7212) and double structures (in NGC 788) are less well aligned with the radio and line emission, and their relationship with scattering regions must be considered uncertain. The colours of the blue maxima are consistent with those expected from ...

  7. VALIDATION OF SPACEBORNE RADAR SURFACE WATER MAPPING WITH OPTICAL sUAS IMAGES

    Directory of Open Access Journals (Sweden)

    J. Li-Chee-Ming

    2015-08-01

    Full Text Available The Canada Centre for Remote Sensing (CCRS has over 40 years of experience with airborne and spaceborne sensors and is now starting to use small Unmanned Aerial Systems (sUAS to validate products from large coverage area sensors and create new methodologies for very high resolution products. Wetlands have several functions including water storage and retention which can reduce flooding and provide continuous flow for hydroelectric generation and irrigation for agriculture. Synthetic Aperture Radar is well suited as a tool for monitoring surface water by supplying acquisitions irrespective of cloud cover or time of day. Wetlands can be subdivided into three classes: open water, flooded vegetation and upland which can vary seasonally with time and water level changes. RADARSAT‐2 data from the Wide-Ultra Fine, Spotlight and Fine Quad-Pol modes has been used to map the open water in the Peace‐Athabasca Delta, Alberta using intensity thresholding. We also use spotlight modes for higher resolution and the fully polarimetric mode (FQ for polarimetric decomposition. Validation of these products will be done using a low altitude flying sUAS to generate optical georeferenced images. This project provides methodologies which could be used for flood mapping as well as ecological monitoring.

  8. AUTOMATIC MAPPING OF GLACIER BASED ON SAR IMAGERY BY BENEFITS OF FREELY OPTICAL AND THERMAL DATA

    Directory of Open Access Journals (Sweden)

    L. Fang

    2015-03-01

    Full Text Available For many research applications like water resources evaluation, determination of glacier specific changes, and for calculation of the past and future contribution of glaciers to sea-level change, parameters about the size and spatial distribution of glaciers is crucial. In this paper, an automatic method for determination of glacier surface area using single track high resolution TerraSAR-X imagery by benefits of low resolution optical and thermal data is presented. Based on the normalized difference snow index (NDSI and land surface temperature (LST map generated from optical and thermal data combined with a surface slope data, a low resolution binary mask was derived used for the supervised classification of glacier using SAR imagery. Then, a set of suitable features is derived from the SAR intensity image, such as the texture information generated based on the gray level co-occurrence matrix (GLCM, and the intensity values. With these features, the glacier surface is discriminated from the background by Random Forests (RF method.

  9. Automatic Mapping of Glacier Based on SAR Imagery by Benefits of Freely Optical and Thermal Data

    Science.gov (United States)

    Fang, L.; Hoegner, L.; Stilla, U.

    2015-03-01

    For many research applications like water resources evaluation, determination of glacier specific changes, and for calculation of the past and future contribution of glaciers to sea-level change, parameters about the size and spatial distribution of glaciers is crucial. In this paper, an automatic method for determination of glacier surface area using single track high resolution TerraSAR-X imagery by benefits of low resolution optical and thermal data is presented. Based on the normalized difference snow index (NDSI) and land surface temperature (LST) map generated from optical and thermal data combined with a surface slope data, a low resolution binary mask was derived used for the supervised classification of glacier using SAR imagery. Then, a set of suitable features is derived from the SAR intensity image, such as the texture information generated based on the gray level co-occurrence matrix (GLCM), and the intensity values. With these features, the glacier surface is discriminated from the background by Random Forests (RF) method.

  10. Wide-field optical mapping of neural activity and brain haemodynamics: considerations and novel approaches

    Science.gov (United States)

    Ma, Ying; Shaik, Mohammed A.; Kozberg, Mariel G.; Thibodeaux, David N.; Zhao, Hanzhi T.; Yu, Hang

    2016-01-01

    Although modern techniques such as two-photon microscopy can now provide cellular-level three-dimensional imaging of the intact living brain, the speed and fields of view of these techniques remain limited. Conversely, two-dimensional wide-field optical mapping (WFOM), a simpler technique that uses a camera to observe large areas of the exposed cortex under visible light, can detect changes in both neural activity and haemodynamics at very high speeds. Although WFOM may not provide single-neuron or capillary-level resolution, it is an attractive and accessible approach to imaging large areas of the brain in awake, behaving mammals at speeds fast enough to observe widespread neural firing events, as well as their dynamic coupling to haemodynamics. Although such wide-field optical imaging techniques have a long history, the advent of genetically encoded fluorophores that can report neural activity with high sensitivity, as well as modern technologies such as light emitting diodes and sensitive and high-speed digital cameras have driven renewed interest in WFOM. To facilitate the wider adoption and standardization of WFOM approaches for neuroscience and neurovascular coupling research, we provide here an overview of the basic principles of WFOM, considerations for implementation of wide-field fluorescence imaging of neural activity, spectroscopic analysis and interpretation of results. This article is part of the themed issue ‘Interpreting BOLD: a dialogue between cognitive and cellular neuroscience’. PMID:27574312

  11. Neural maps of interaural time and intensity differences in the optic tectum of the barn owl.

    Science.gov (United States)

    Olsen, J F; Knudsen, E I; Esterly, S D

    1989-07-01

    This report describes the binaural basis of the auditory space map in the optic tectum of the barn owl (Tyto alba). Single units were recorded extracellularly in ketamine-anesthetized birds. Unit tuning for interaural differences in timing and intensity of wideband noise was measured using digitally synthesized sound presented through earphones. Spatial receptive fields of the same units were measured with a free field sound source. Auditory units in the optic tectum are sharply tuned for both the azimuth and the elevation of a free field sound source. To determine the binaural cues that could be responsible for this spatial tuning, we measured in the ear canals the amplitude and phase spectra produced by a free field noise source and calculated from these measurements the interaural differences in time and intensity associated with each of 178 locations throughout the frontal hemisphere. For all frequencies, interaural time differences (ITDs) varied systematically and most strongly with source azimuth. The pattern of variation of interaural intensity differences (IIDs) depended on frequency. For low frequencies (below 4 kHz) IID varied primarily with source azimuth, whereas for high frequencies (above 5 kHz) IID varied primarily with source elevation. Tectal units were tuned for interaural differences in both time and intensity of dichotic stimuli. Changing either parameter away from the best value for the unit decreased the unit's response. The tuning of units to either parameter was sharp: the width of ITD tuning curves, measured at 50% of the maximum response with IID held constant (50% tuning width), ranged from 18 to 82 microsecs. The 50% tuning widths of IID tuning curves, measured with ITD held constant, ranged from 8 to 37 dB. For most units, tuning for ITD was largely independent of IID, and vice versa. A few units exhibited systematic shifts of the best ITD with changes in IID (or shifts of the best IID with changes in ITD); for these units, a change in

  12. Current trends in intraoperative optical imaging for functional brain mapping and delineation of lesions of language cortex.

    Science.gov (United States)

    Prakash, Neal; Uhlemann, Falk; Sheth, Sameer A; Bookheimer, Susan; Martin, Neil; Toga, Arthur W

    2009-08-01

    Resection of a cerebral arteriovenous malformation (AVM), epileptic focus, or glioma, ideally has a prerequisite of microscopic delineation of the lesion borders in relation to the normal gray and white matter that mediate critical functions. Currently, Wada testing and functional magnetic resonance imaging (fMRI) are used for preoperative mapping of critical function, whereas electrical stimulation mapping (ESM) is used for intraoperative mapping. For lesion delineation, MRI and positron emission tomography (PET) are used preoperatively, whereas microscopy and histological sectioning are used intraoperatively. However, for lesions near eloquent cortex, these imaging techniques may lack sufficient resolution to define the relationship between the lesion and language function, and thus not accurately determine which patients will benefit from neurosurgical resection of the lesion without iatrogenic aphasia. Optical techniques such as intraoperative optical imaging of intrinsic signals (iOIS) show great promise for the precise functional mapping of cortices, as well as delineation of the borders of AVMs, epileptic foci, and gliomas. Here we first review the physiology of neuroimaging, and then progress towards the validation and justification of using intraoperative optical techniques, especially in relation to neurosurgical planning of resection AVMs, epileptic foci, and gliomas near or in eloquent cortex. We conclude with a short description of potential novel intraoperative optical techniques.

  13. Estimation of the parameter covariance matrix for aone-compartment cardiac perfusion model estimated from a dynamic sequencereconstructed using map iterative reconstruction algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Gullberg, Grant T.; Huesman, Ronald H.; Reutter, Bryan W.; Qi,Jinyi; Ghosh Roy, Dilip N.

    2004-01-01

    In dynamic cardiac SPECT estimates of kinetic parameters ofa one-compartment perfusion model are usually obtained in a two stepprocess: 1) first a MAP iterative algorithm, which properly models thePoisson statistics and the physics of the data acquisition, reconstructsa sequence of dynamic reconstructions, 2) then kinetic parameters areestimated from time activity curves generated from the dynamicreconstructions. This paper provides a method for calculating thecovariance matrix of the kinetic parameters, which are determined usingweighted least squares fitting that incorporates the estimated varianceand covariance of the dynamic reconstructions. For each transaxial slicesets of sequential tomographic projections are reconstructed into asequence of transaxial reconstructions usingfor each reconstruction inthe time sequence an iterative MAP reconstruction to calculate themaximum a priori reconstructed estimate. Time-activity curves for a sumof activity in a blood region inside the left ventricle and a sum in acardiac tissue region are generated. Also, curves for the variance of thetwo estimates of the sum and for the covariance between the two ROIestimates are generated as a function of time at convergence using anexpression obtained from the fixed-point solution of the statisticalerror of the reconstruction. A one-compartment model is fit to the tissueactivity curves assuming a noisy blood input function to give weightedleast squares estimates of blood volume fraction, wash-in and wash-outrate constants specifying the kinetics of 99mTc-teboroxime for theleftventricular myocardium. Numerical methods are used to calculate thesecond derivative of the chi-square criterion to obtain estimates of thecovariance matrix for the weighted least square parameter estimates. Eventhough the method requires one matrix inverse for each time interval oftomographic acquisition, efficient estimates of the tissue kineticparameters in a dynamic cardiac SPECT study can be obtained with

  14. Topographic Mapping and Compression Elasticity Analysis of Skinned Cardiac Muscle Fibers in Vitro with Atomic Force Microscopy and Nanoindentation

    OpenAIRE

    2009-01-01

    Surface topography and compression elasticity of bovine cardiac muscle fibers in rigor and relaxing state has been studied with atomic force microscopy. Characteristic sarcomere patterns running along the longitudinal axis of the fibers were clearly observed, and Z-lines, M-lines, I-bands, and A-bands can be distinguished through comparing with TEM images and force curves. AFM height images of fibers had shown a sarcomere length of 1.22±0.02μm (n=5) in rigor with a significant 9% increase in ...

  15. Mapping agricultural phenology using repetitive optical remote sensing over a peri-urban region

    Science.gov (United States)

    Delbart, Nicolas; Vaudour, Emmanuelle; Dragoi, Mihaela; Maignan, Fabienne; Ottlé, Catherine

    2016-04-01

    This study explores the potential of multi-temporal optical remote sensing, with high revisit frequency, to derive missing information on agricultural practices necessary to model soil organic carbon content, over the agricultural lands in the Versailles plain in the western Paris suburbs. This study comes besides past and ongoing studies on the use of radar and high spatial resolution optical remote sensing to monitor agricultural practices in this study area (e.g. Vaudour et al. 2014). Agricultural statistics, such as the Land Parcel Identification System (LPIS) for France, permit to know the nature of annual crops for each digitized declared field of this land parcel registry. However, within each declared field, several cropped plots and a diversity of practices may exist, being marked by agricultural rotations which vary both spatially and temporally within it and differ from one year to the other. Very high spatial resolution Pléiades satellite data has allowed delineating crops plots, and identifying crops within declared fields, revealing this fine spatial crop pattern. Here we evaluate the potential of high observation frequency remote sensing to differentiate seasonal crops (e.g. winter barley from spring barley) and to evaluate key phenological moments. In particular, in addition to a dataset of field observations, we use three datasets at three complementary spatial resolutions: the CNES SPOT4-TAKE5 at ten meters in the 2013 winter and spring, the Landsat data at 30m, and the large-swath PROBA-V central camera data at 100m available since May 2013. The analysis of each dataset is done first on a pixel-based approach and second on a within-plot approach on the basis of the above described crop map. This work is carried out in the framework of the CNES TOSCA-PLEIADES-CO of the French Space Agency.

  16. Logarithmic r-θ mapping for hybrid optical neural network filter for multiple objects recognition within cluttered scenes

    Science.gov (United States)

    Kypraios, Ioannis; Young, Rupert C. D.; Chatwin, Chris R.; Birch, Phil M.

    2009-04-01

    θThe window unit in the design of the complex logarithmic r-θ mapping for hybrid optical neural network filter can allow multiple objects of the same class to be detected within the input image. Additionally, the architecture of the neural network unit of the complex logarithmic r-θ mapping for hybrid optical neural network filter becomes attractive for accommodating the recognition of multiple objects of different classes within the input image by modifying the output layer of the unit. We test the overall filter for multiple objects of the same and of different classes' recognition within cluttered input images and video sequences of cluttered scenes. Logarithmic r-θ mapping for hybrid optical neural network filter is shown to exhibit with a single pass over the input data simultaneously in-plane rotation, out-of-plane rotation, scale, log r-θ map translation and shift invariance, and good clutter tolerance by recognizing correctly the different objects within the cluttered scenes. We record in our results additional extracted information from the cluttered scenes about the objects' relative position, scale and in-plane rotation.

  17. Multimodality approach to optical early detection and mapping of oral neoplasia

    Science.gov (United States)

    Ahn, Yeh-Chan; Chung, Jungrae; Wilder-Smith, Petra; Chen, Zhongping

    2011-07-01

    Early detection of cancer remains the best way to ensure patient survival and quality of life. Squamous cell carcinoma is usually preceded by dysplasia presenting as white, red, or mixed red and white epithelial lesions on the oral mucosa (leukoplakia, erythroplakia). Dysplastic lesions in the form of erythroplakia can carry a risk for malignant conversion of 90%. A noninvasive diagnostic modality would enable monitoring of these lesions at regular intervals and detection of treatment needs at a very early, relatively harmless stage. The specific aim of this work was to test a multimodality approach [three-dimensional optical coherence tomography (OCT) and polarimetry] to noninvasive diagnosis of oral premalignancy and malignancy using the hamster cheek pouch model (nine hamsters). The results were compared to tissue histopathology. During carcinogenesis, epithelial down grow, eventual loss of basement membrane integrity, and subepithelial invasion were clearly visible with OCT. Polarimetry techniques identified a four to five times increased retardance in sites with squamous cell carcinoma, and two to three times greater retardance in dysplastic sites than in normal tissues. These techniques were particularly useful for mapping areas of field cancerization with multiple lesions, as well as lesion margins.

  18. Mapping of the extinction in Giant Molecular Clouds using optical star counts

    CERN Document Server

    Cambresy, L

    1999-01-01

    This paper presents large scale extinction maps of most nearby Giant Molecular Clouds of the Galaxy (Lupus, rho-Ophiuchus, Scorpius, Coalsack, Taurus, Chamaeleon, Musca, Corona Australis, Serpens, IC 5146, Vela, Orion, Monoceros R1 and R2, Rosette, Carina) derived from a star count method using an adaptive grid and a wavelet decomposition applied to the optical data provided by the USNO-Precision Measuring Machine. The distribution of the extinction in the clouds leads to estimate their total individual masses M and their maximum of extinction. I show that the relation between the mass contained within an iso-extinction contour and the extinction is similar from cloud to cloud and allows the extrapolation of the maximum of extinction in the range 5.7 to 25.5 magnitudes. I found that about half of the mass is contained in regions where the visual extinction is smaller than 1 magnitude. The star count method used on large scale (about 250 square degrees) is a powerful and relatively straightforward method to es...

  19. Optical polarization map of the Polaris Flare with RoboPol

    CERN Document Server

    Panopoulou, G V; Blinov, D; Pavlidou, V; King, O G; Paleologou, E; Ramaprakash, A; Angelakis, E; Balokovic, M; Das, H K; Feiler, R; Hovatta, T; Khodade, P; Kiehlmann, S; Kus, A; Kylafis, N; Liodakis, I; Modi, D; Myserlis, I; Papadakis, I; Papamastorakis, I; Pazderska, B; Pazderski, E; Pearson, T J; Rajarshi, C; Readhead, A C S; Reig, P; Zensus, J A

    2015-01-01

    The stages before the formation of stars in molecular clouds are poorly understood. Insights can be gained by studying the properties of quiescent clouds, such as their magnetic field structure. The plane-of-the-sky orientation of the field can be traced by polarized starlight. We present the first extended, wide-field ($\\sim$10 $\\rm deg^2$) map of the Polaris Flare cloud in dust-absorption induced optical polarization of background stars, using the RoboPol polarimeter at the Skinakas Observatory. This is the first application of the wide-field imaging capabilities of RoboPol. The data were taken in the R-band and analysed with the automated reduction pipeline of the instrument. We present in detail optimizations in the reduction pipeline specific to wide-field observations. Our analysis resulted in reliable measurements of 648 stars with median fractional linear polarization 1.3%. The projected magnetic field shows a large scale ordered pattern. At high longitudes it appears to align with faint striations se...

  20. The Weather-Beaten Dorsal Hand Clinical Rating, Shadow Casting Optical Profilometry, and Skin Capacitance Mapping

    Directory of Open Access Journals (Sweden)

    Marie Delvenne

    2013-01-01

    Full Text Available Laypeople commonly perceive some skin xerosis and withering (roughness changes during winter on some parts of the body, particularly on the dorsal hands. The aim of the study was to assess the withered skin surface changes occurring during the four seasons. A total of 47 menopausal women completed the study. A group of 31 volunteers were on hormone replacement therapy (HRT and 16 were out of HRT. Skin xerosis and scaliness were rated clinically. In addition, skin whitening was assessed by computerized shadow casting optical profilometry and by skin capacitance mapping. The volunteers were not using topical creams and over-the-counter products on their hands. Marked changes, recorded over the successive seasons, corresponded to patchy heterogeneous stratum corneum hydration and heterogeneous skin surface roughness changing over seasons; they likely resulted from changes in the environmental temperature and atmosphere moisture. The severity of the changes revealed by clinical inspection was not supported by similar directions of fluctuations in the instrumental assessments. This seemingly contradiction was in fact due to different levels of scale observation. The clinical centimetric scale and the instrumental inframillimetric scale possibly provide distinct aspects of a given biological impact.

  1. Data analysis in cardiac arrhythmias.

    Science.gov (United States)

    Rodrigo, Miguel; Pedrón-Torecilla, Jorge; Hernández, Ismael; Liberos, Alejandro; Climent, Andreu M; Guillem, María S

    2015-01-01

    Cardiac arrhythmias are an increasingly present in developed countries and represent a major health and economic burden. The occurrence of cardiac arrhythmias is closely linked to the electrical function of the heart. Consequently, the analysis of the electrical signal generated by the heart tissue, either recorded invasively or noninvasively, provides valuable information for the study of cardiac arrhythmias. In this chapter, novel cardiac signal analysis techniques that allow the study and diagnosis of cardiac arrhythmias are described, with emphasis on cardiac mapping which allows for spatiotemporal analysis of cardiac signals.Cardiac mapping can serve as a diagnostic tool by recording cardiac signals either in close contact to the heart tissue or noninvasively from the body surface, and allows the identification of cardiac sites responsible of the development or maintenance of arrhythmias. Cardiac mapping can also be used for research in cardiac arrhythmias in order to understand their mechanisms. For this purpose, both synthetic signals generated by computer simulations and animal experimental models allow for more controlled physiological conditions and complete access to the organ.

  2. Space Telescope and Optical Reverberation Mapping Project. II. Swift and HST Reverberation Mapping of the Accretion Disk of NGC 5548

    CERN Document Server

    Edelson, R; Horne, K; McHardy, I M; Peterson, B M; Arevalo, P; Breeveld, A A; DeRosa, G; Evans, P A; Goad, M R; Kriss, G A; Brandt, W N; Gehrels, N; Grupe, D; Kennea, J A; Kochanek, C S; Nousek, J A; Papadakis, I; Siegel, M; Starkey, D; Uttley, P; Vaughan, S; Young, S; Barth, A J; Bentz, M C; Brewer, B J; Crenshaw, D M; Bonta, E Dalla; De Lorenzo-Caceres, A; Denney, K D; Dietrich, M; Ely, J; Fausnaugh, M M; Grier, C J; Hall, P B; Kaastra, J; Kelly, B C; Korista, K T; Lira, P; Mathur, S; Netzer, H; Pancoast, A; Pei, L; Pogge, R W; Schimoia, J S; Treu, T; Vestergaard, M; Villforth, C; Yan, H; Zu, Y

    2015-01-01

    Recent intensive Swift monitoring of the Seyfert 1 galaxy NGC 5548 yielded 282 usable epochs over 125 days across six UV/optical bands and the X-rays. This is the densest extended AGN UV/optical continuum sampling ever obtained, with a mean sampling rate < 0.5-day. Approximately daily HST UV sampling was also obtained. The UV/optical light curves show strong correlations (r_max = 0.57 - 0.90) and the clearest measurement to date of interband lags. These lags are well-fit by a lambda^4/3 wavelength dependence, with a normalization that indicates an unexpectedly large disk size of ~0.35 +/- 0.05 lt-day at 1367 A, assuming a simple face-on model. The U-band shows a marginally larger lag than expected from the fit and surrounding bands, which could be due to Balmer continuum emission from the broad-line region as suggested by Korista and Goad. The UV/X-ray correlation is weaker (r_max < 0.45) and less consistent over time. This indicates that while Swift is beginning to measure UV/optical lags in agreement ...

  3. Cardiac Optogenetics: Enhancement by All-trans-Retinal.

    Science.gov (United States)

    Yu, Jinzhu; Chen, Kay; Lucero, Rachel V; Ambrosi, Christina M; Entcheva, Emilia

    2015-11-16

    All-trans-Retinal (ATR) is a photosensitizer, serving as the chromophore for depolarizing and hyperpolarizing light-sensitive ion channels and pumps (opsins), recently employed as fast optical actuators. In mammalian optogenetic applications (in brain and heart), endogenous ATR availability is not considered a limiting factor, yet it is unclear how ATR modulation may affect the response to optical stimulation. We hypothesized that exogenous ATR may improve light responsiveness of cardiac cells modified by Channelrhodopsin2 (ChR2), hence lowering the optical pacing energy. In virally-transduced (Ad-ChR2(H134R)-eYFP) light-sensitive cardiac syncytium in vitro, ATR supplements ≤2 μM improved cardiomyocyte viability and augmented ChR2 membrane expression several-fold, while >4 μM was toxic. Employing integrated optical actuation (470 nm) and optical mapping, we found that 1-2 μM ATR dramatically reduced optical pacing energy (over 30 times) to several μW/mm(2), lowest values reported to date, but also caused action potential prolongation, minor changes in calcium transients and no change in conduction. Theoretical analysis helped explain ATR-caused reduction of optical excitation threshold in cardiomyocytes. We conclude that cardiomyocytes operate at non-saturating retinal levels, and carefully-dosed exogenous ATR can enhance the performance of ChR2 in cardiac cells and yield energy benefits over orders of magnitude for optogenetic stimulation.

  4. Necessity of angiotensin-converting enzyme-related gene for cardiac functions and longevity of Drosophila melanogaster assessed by optical coherence tomography

    Science.gov (United States)

    Liao, Fang-Tsu; Chang, Cheng-Yi; Su, Ming-Tsan; Kuo, Wen-Chuan

    2014-01-01

    Prior studies have established the necessity of an angiotensin-converting enzyme-related (ACER) gene for heart morphogenesis of Drosophila. Nevertheless, the physiology of ACER has yet to be comprehensively understood. Herein, we employed RNA interference to down-regulate the expression of ACER in Drosophila's heart and swept source optical coherence tomography to assess whether ACER is required for cardiac functions in living adult flies. Several contractile parameters of Drosophila heart, including the heart rate (HR), end-diastolic diameter (EDD), end-systolic diameter (ESD), percent fractional shortening (%FS), and stress-induced cardiac performance, are shown, which are age dependent. These age-dependent cardiac functions declined significantly when ACER was down-regulated. Moreover, the lifespans of ACER knock-down flies were significantly shorter than those of wild-type control flies. Thus, we posit that ACER, the Drosophila ortholog of mammalian angiotensin-converting enzyme 2 (ACE2), is essential for both heart physiology and longevity of animals. Since mammalian ACE2 controls many cardiovascular physiological features and is implicated in cardiomyopathies, our findings that ACER plays conserved roles in genetically tractable animals will pave the way for uncovering the genetic pathway that controls the renin-angiotensin system.

  5. In-situ biofouling assessment in spacer filled channels using optical coherence tomography (OCT): 3D biofilm thickness mapping

    KAUST Repository

    Fortunato, Luca

    2017-01-13

    Membrane systems for water purification can be seriously hampered by biofouling. The use of optical coherence tomography (OCT) to investigate biofilms in membrane systems has recently increased due to the ability to do the characterization in-situ and non-destructively The OCT biofilm thickness map is presented for the first time as a tool to assess biofilm spatial distribution on a surface. The map allows the visualization and evaluation of the biofilm formation and growth in membrane filtration systems through the use of a false color scale. The biofilm development was monitored with OCT to evaluate the suitability of the proposed approach. A 3D time series analysis of biofilm development in a spacer filled channel representative of a spiral-wound membrane element was performed. The biofilm thickness map enables the time-resolved and spatial-resolved evaluation and visualization of the biofilm deposition pattern in-situ non-destructively.

  6. Performance evaluation for 160-Gb/s optical phase conjugation systems considering dispersion mapping and third-order dispersion

    Institute of Scientific and Technical Information of China (English)

    Jianqiang Li; Kun Xu; Guangtao Zhou; Jian Wu; Jintong Lin

    2007-01-01

    The impact of third-order dispersion (TOD) is investigated by numerical simulations in 160-Gb/s singlechannel systems incorporated with dispersion mapping and optical phase conjugation (OPC). System performances using retrun-to-zero (RZ) or carrier-suppressed RZ (CSRZ) modulation format are evaluated on the optimized dispersion map. The results indicate that even though TOD has been fully compensated,the intra-channel nonlinearity induced by local TOD would degrade the system performance in nonlinear regime. The scheme with an optimized dispersion map provides a much higher performance and offers a larger tolerance on a variation of pre-compensation. CSRZ modulation format is more robust due to its tradeoff between tolerances on intra-channel nonlinearity and dispersion.

  7. In vivo microcirculation imaging of the sub surface fingertip using correlation mapping optical coherence tomography (cmOCT)

    Science.gov (United States)

    Dsouza, Roshan I.; Zam, Azhar; Subhash, Hrebesh M.; Larin, Kirill V.; Leahy, Martin

    2013-02-01

    We describe a novel application of correlation mapping optical coherence tomography (cmOCT) for sub-surface fingerprint biometric identification. Fingerprint biometrics including automated fingerprint identification systems, are commonly used to recognise the fingerprint, since they constitute simple, effective and valuable physical evidence. Spoofing of biometric fingerprint devices can be easily done because of the limited information obtained from the surface topography. In order to overcome this limitation a potentially more secure source of information is required for biometric identification applications. In this study, we retrieve the microcirculation map of the subsurface fingertip by use of the cmOCT technique. To increase probing depth of the sub surface microcirculation, an optical clearing agent composed of 75% glycerol in aqueous solution was applied topically and kept in contact for 15 min. OCT intensity images were acquired from commercial research grade swept source OCT system (model OCT1300SS, Thorlabs Inc. USA). A 3D OCT scan of the fingertip was acquired over an area of 5x5 mm using 1024x1024 A-scans in approximately 70 s. The resulting volume was then processed using the cmOCT technique with a 7x7 kernel to provide a microcirculation map. We believe these results will demonstrate an enhanced security level over artificial fingertips. To the best of our knowledge, this is the first demonstration of imaging microcirculation map of the subsurface fingertip.

  8. Investigation into local cell mechanics by atomic force microscopy mapping and optical tweezer vertical indentation

    Science.gov (United States)

    Coceano, G.; Yousafzai, M. S.; Ma, W.; Ndoye, F.; Venturelli, L.; Hussain, I.; Bonin, S.; Niemela, J.; Scoles, G.; Cojoc, D.; Ferrari, E.

    2016-02-01

    Investigating the mechanical properties of cells could reveal a potential source of label-free markers of cancer progression, based on measurable viscoelastic parameters. The Young’s modulus has proved to be the most thoroughly studied so far, however, even for the same cell type, the elastic modulus reported in different studies spans a wide range of values, mainly due to the application of different experimental conditions. This complicates the reliable use of elasticity for the mechanical phenotyping of cells. Here we combine two complementary techniques, atomic force microscopy (AFM) and optical tweezer microscopy (OTM), providing a comprehensive mechanical comparison of three human breast cell lines: normal myoepithelial (HBL-100), luminal breast cancer (MCF-7) and basal breast cancer (MDA-MB-231) cells. The elastic modulus was measured locally by AFM and OTM on single cells, using similar indentation approaches but different measurement parameters. Peak force tapping AFM was employed at nanonewton forces and high loading rates to draw a viscoelastic map of each cell and the results indicated that the region on top of the nucleus provided the most meaningful results. OTM was employed at those locations at piconewton forces and low loading rates, to measure the elastic modulus in a real elastic regime and rule out the contribution of viscous forces typical of AFM. When measured by either AFM or OTM, the cell lines’ elasticity trend was similar for the aggressive MDA-MB-231 cells, which were found to be significantly softer than the other two cell types in both measurements. However, when comparing HBL-100 and MCF-7 cells, we found significant differences only when using OTM.

  9. The Full-sky Astrometric Mapping Explorer - An optical, astrometric survey mission

    Science.gov (United States)

    Horner, S. D.; Germain, M. E.; Greene, T. P.; Harris, F. H.; Harris, H. C.; Johnson, M. S.; Johnston, K. J.; Monet, D. G.; Murison, M. A.; Phillips, J. D.; Reasenberg, R. D.; Seidelmann, P. K.; Urban, S. E.; Vassar, R. H.

    1999-12-01

    The Full-sky Astrometric Mapping Explorer (FAME) is a NASA MIDEX mission scheduled for launch in 2004. It will perform an all sky, astrometric survey with unprecedented accuracy. FAME will determine the positions, parallaxes, proper motions, and photometry of 40,000,000 stars with visual band magnitudes 5 DSS colors. FAME will enable a wide range of scientific investigations using its large, rich database of information on stellar properties. It will: * Calibrate the zero point of the extragalactic distance scale to 1% * Determine absolute luminosities of a wide range of spectral types * Detect a meaningful statistical sample of companion stars, brown dwarfs, and giant planets * Enable studies of the kinematics of our galaxy, including the effect of dark matter in the disk * Characterize stellar variability of a large sample of stars at the 0.1% level * Define a rigid optical reference frame for future scientific endeavors FAME is evolved from design concepts from the Hipparcos mission, using current CCD technology to observe more and fainter stars. Like Hipparcos, FAME has a compound mirror consisting of two flats angled relative to each other. The compound mirror feeds the two fields of view separated by the ``basic angle'' into a common telescope. The two fields of view are used to control the growth of stochastic errors in determining the relative separations of stars. FAME is a joint development effort of the U.S. Naval Observatory, the Naval Research Laboratory, Lockheed Martin Missiles and Space Advanced Technology Center, and the Smithsonian Astrophysical Observatory. Funding for FAME is provided by the NASA Office of Space Science through the Explorer program managed by Goddard Space Flight Center. Additional funding has been provided by the U.S. Navy. http://www.usno.navy.mil/fame

  10. Towed Optical Assessment Device (TOAD) Data to Support Benthic Habitat Mapping since 2001

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a Tethered Optical Assessment Device (TOAD), an underwater sled equipped with an underwater digital video camera and...

  11. Dual optical recordings for action potentials and calcium handling in induced pluripotent stem cell models of cardiac arrhythmias using genetically encoded fluorescent indicators.

    Science.gov (United States)

    Song, LouJin; Awari, Daniel W; Han, Elizabeth Y; Uche-Anya, Eugenia; Park, Seon-Hye E; Yabe, Yoko A; Chung, Wendy K; Yazawa, Masayuki

    2015-05-01

    Reprogramming of human somatic cells to pluripotency has been used to investigate disease mechanisms and to identify potential therapeutics. However, the methods used for reprogramming, in vitro differentiation, and phenotyping are still complicated, expensive, and time-consuming. To address the limitations, we first optimized a protocol for reprogramming of human fibroblasts and keratinocytes into pluripotency using single lipofection and the episomal vectors in a 24-well plate format. This method allowed us to generate multiple lines of integration-free and feeder-free induced pluripotent stem cells (iPSCs) from seven patients with cardiac diseases and three controls. Second, we differentiated human iPSCs derived from patients with Timothy syndrome into cardiomyocytes using a monolayer differentiation method. We found that Timothy syndrome cardiomyocytes showed slower, irregular contractions and abnormal calcium handling compared with the controls. The results are consistent with previous reports using a retroviral method for reprogramming and an embryoid body-based method for cardiac differentiation. Third, we developed an efficient approach for recording the action potentials and calcium transients simultaneously in control and patient cardiomyocytes using genetically encoded fluorescent indicators, ArcLight and R-GECO1. The dual optical recordings enabled us to observe prolonged action potentials and abnormal calcium handling in Timothy syndrome cardiomyocytes. We confirmed that roscovitine rescued the phenotypes in Timothy syndrome cardiomyocytes and that these findings were consistent with previous studies using conventional electrophysiological recordings and calcium imaging with dyes. The approaches using our optimized methods and dual optical recordings will improve iPSC applicability for disease modeling to investigate mechanisms underlying cardiac arrhythmias and to test potential therapeutics.

  12. Topographic mapping and compression elasticity analysis of skinned cardiac muscle fibers in vitro with atomic force microscopy and nanoindentation.

    Science.gov (United States)

    Zhu, Jie; Sabharwal, Tanya; Kalyanasundaram, Aruna; Guo, Lianhong; Wang, Guodong

    2009-09-18

    Surface topography and compression elasticity of bovine cardiac muscle fibers in rigor and relaxing state have been studied with atomic force microscopy. Characteristic sarcomere patterns running along the longitudinal axis of the fibers were clearly observed, and Z-lines, M-lines, I-bands, and A-bands can be distinguished through comparing with TEM images and force curves. AFM height images of fibers had shown a sarcomere length of 1.22+/-0.02 microm (n=5) in rigor with a significant 9% increase in sarcomere length in relaxing state (1.33+/-0.03 microm, n=5), indicating that overlap moves with the changing physiological conditions. Compression elasticity curves along with sarcomere locations have been taken by AFM compression processing. Coefficient of Z-line, I-band, Overlap, and M-line are 25+/-2, 8+/-1, 10+/-1, and 17+/-1.5 pN/nm respectively in rigor state, and 18+/-2.5, 4+/-0.5, 6+/-1, and 11+/-0.5 pN/nm respectively in relaxing state. Young's Modulus in Z-line, I-band, Overlap, and M-line are 115+/-12, 48+/-9, 52+/-8, and 90+/-12 kPa respectively in rigor, and 98+/-10, 23+/-4, 42+/-4, and 65+/-7 kPa respectively in relaxing state. The elasticity curves have shown a similar appearance to the section analysis profile of AFM height images of sarcomere and the distance between adjacent largest coefficient and Young's Modulus is equal to the sarcomere length measured from the AFM height images using section analysis, indicating that mechanic properties of fibers have a similar periodicity to the topography of fibers.

  13. Optical characters and texture maps of skin and the aging mechanism by use of multiphoton microscopy and optical coherence tomography

    Science.gov (United States)

    Wu, Shulian; Li, Hui; Zhang, Xiaoman; Huang, Yudian; Xu, Xiaohui

    2012-03-01

    Cutaneous aging is a complicated biological process affecting different constituents of skin, which can be divided into two types: the chronological aging and the photo-aging. The two cutaneous aging processes often co-exist accompanying with each other. The effects are often overlapped including changes in epithelium and dermis. The degeneration of collagen is a major factor in dermal alteration with aging. In this study, multiphoton microscopy (MPM) with its high resolution imaging and optical coherence tomography (OCT) with its depth resolved imaging were used to study the anti-aging dermatology in vivo. It was attempted to make the optical parameter and texture feature to evaluate the process of aging skin using mathematical image processing. The links among optical parameter, spectrum and texture feature in collagen with aging process were established to uncover mechanism of aging skin.

  14. Lunar iron and optical maturity mapping: Results from partial least squares modeling of Chang'E-1 IIM data

    Science.gov (United States)

    Sun, Lingzhi; Ling, Zongcheng; Zhang, Jiang; Li, Bo; Chen, Jian; Wu, Zhongchen; Liu, Jianzhong

    2016-12-01

    Iron and optical maturity (OMAT) are two key geological marks of the Moon that closely related to its geochemical evolution and interactions between surface and space environment. We apply Partial Least Squares (PLS) regression to Chang'E-1 Imaging Interferometer (IIM) (32 bands between 480 and 960 nm) in mapping lunar global FeO and OMAT, and the FeO and OMAT values are derived based on reasonable spectral parameters (absorbance, band ratios, TiO2 and maturity sensitive parameters, etc.). After been calibrated by the FeO map from Lunar Prospector Gamma-Ray Spectrometer (LP-GRS), the global FeO map derived from PLS modeling shows a quantitatively more reasonable result consistent with previous remote sensing results (LP) as well as lunar feldspathic meteorite studies and Chang'E-3 landing site. Based on the new FeO map by Chang'E-1, we discover a compositional inhomogeneity across lunar highland regions, which has not been suggested by previous datasets (e.g., Clementine UVVIS). Furthermore, we suggest that at least part of the FeO enrichments in highlands would be caused by mixing of highland and mare materials. The IIM derived OMAT map does not suggest a dichotomy of the lunar highlands and mare regions, implying the compositional differences between those two terrains have been suppressed. We further check the maturity effect for the young mare basalts (20 wt%) and ultrahigh-TiO2 (>10 wt%) tend to have greater OMAT values and vary little with ages; (3) this may be due to the distinct optical maturity effects of ultramafic minerals (i.e., ultrahigh Fe and Ti) and/or the spectral blue shifts of abundant ilmenite.

  15. Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4. 1 and its use for whole-genome shotgun sequence assembly

    Energy Technology Data Exchange (ETDEWEB)

    Shou, S. [Univ. Wisc.-Madison; Kvikstad, E. [Univ. Wisc.-Madison; Kile, A. [Univ. Wisc.-Madison; Severin, J. [Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4. 1 and its use for whole-genome shotgun sequence assembly; Forrest, D. [Univ. Wisc.-Madison; Runnheim, R. [Univ. Wisc.-Madison; Churas, C. [Univ. Wisc.-Madison; Hickman, J. W. [Univ. Wisc.-Madison; Mackenzie, C. [University of Texas–Houston Medical School; Choudhary, M. [University of Texas–Houston Medical School; Donohue, T. [Univ. Wisc.-Madison; Kaplan, S. [University of Texas–Houston Medical School; Schwartz, D. C. [Univ. Wisc.-Madison

    2003-09-01

    Rhodobacter sphaeroides 2.4.1 is a facultative photoheterotrophic bacterium with tremendous metabolic diversity, which has significantly contributed to our understanding of the molecular genetics of photosynthesis, photoheterotrophy, nitrogen fixation, hydrogen metabolism, carbon dioxide fixation, taxis, and tetrapyrrole biosynthesis. To further understand this remarkable bacterium, and to accelerate an ongoing sequencing project, two whole-genome restriction maps (EcoRI and HindIII) of R. sphaeroides strain 2.4.1 were constructed using shotgun optical mapping. The approach directly mapped genomic DNA by the random mapping of single molecules. The two maps were used to facilitate sequence assembly by providing an optical scaffold for high-resolution alignment and verification of sequence contigs. Our results show that such maps facilitated the closure of sequence gaps by the early detection of nascent sequence contigs during the course of the whole-genome shotgun sequencing process.

  16. Geographic mapping of choroidal thickness in myopic eyes using 1050-nm spectral domain optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Qinqin Zhang

    2015-07-01

    Full Text Available Purpose: To provide a geographical map of choroidal thickness (CT around the macular region among subjects with low, moderate and high myopia. Methods: 20 myopic subjects (n = 40 eyes without other identified pathologies participated in this study: 20 eyes of ≤ 3 diopters (D (low myopic, 10 eyes between -3 and -6D (moderate myopic, and 10 eyes of ≥ 6D (high myopic. The mean age of subjects was 30.2 years (± 7.6 years; range, 24 to 46 years. A 1050 nm spectral-domain optical coherence tomography (SD-OCT system, operating at 120 kHz imaging rate, was used in this study to simultaneously capture 3D anatomical images of the choroid and measure intraocular length (IOL in the subject. The 3D OCT images of the choroid were segmented into superior, inferior, nasal and temporal quadrants, from which the CT was measured, representing radial distance between the outer retinal pigment epithelium (RPE layer and inner scleral border. Measurements were made within concentric regions centered at fovea centralis, extended to 5 mm away from fovea at 1 mm intervals in the nasal and temporal directions. The measured IOL was the distance from the anterior cornea surface to the RPE in alignment along the optical axis of the eye. Statistical analysis was performed to evaluate CT at each geographic region and observe the relationship between CT and the degree of myopia. Results: For low myopic eyes, the IOL was measured at 24.619 ± 0.016 mm. The CT (273.85 ± 49.01 μm was greatest under fovea as is in the case of healthy eyes. Peripheral to the fovea, the mean CT decreased rapidly along the nasal direction, reaching a minimum of 180.65 ± 58.25μm at 5 mm away from the fovea. There was less of a change in thickness from the fovea in the temporal direction reaching a minimum of 234.25 ± 42.27 μm. In contrast to the low myopic eyes, for moderate and high myopic eyes, CTs were thickest in temporal region (where CT = 194.94 ± 27.28 and 163 ± 34.89

  17. Estimation of cardiac motion in cine-MRI sequences by correlation transform optical flow of monogenic features distance

    Science.gov (United States)

    Gao, Bin; Liu, Wanyu; Wang, Liang; Liu, Zhengjun; Croisille, Pierre; Delachartre, Philippe; Clarysse, Patrick

    2016-12-01

    Cine-MRI is widely used for the analysis of cardiac function in clinical routine, because of its high soft tissue contrast and relatively short acquisition time in comparison with other cardiac MRI techniques. The gray level distribution in cardiac cine-MRI is relatively homogenous within the myocardium, and can therefore make motion quantification difficult. To ensure that the motion estimation problem is well posed, more image features have to be considered. This work is inspired by a method previously developed for color image processing. The monogenic signal provides a framework to estimate the local phase, orientation, and amplitude, of an image, three features which locally characterize the 2D intensity profile. The independent monogenic features are combined into a 3D matrix for motion estimation. To improve motion estimation accuracy, we chose the zero-mean normalized cross-correlation as a matching measure, and implemented a bilateral filter for denoising and edge-preservation. The monogenic features distance is used in lieu of the color space distance in the bilateral filter. Results obtained from four realistic simulated sequences outperformed two other state of the art methods even in the presence of noise. The motion estimation errors (end point error) using our proposed method were reduced by about 20% in comparison with those obtained by the other tested methods. The new methodology was evaluated on four clinical sequences from patients presenting with cardiac motion dysfunctions and one healthy volunteer. The derived strain fields were analyzed favorably in their ability to identify myocardial regions with impaired motion.

  18. Analysis of nano-chemical mapping performed by an AFM-based ('AFMIR') acousto-optic technique

    Energy Technology Data Exchange (ETDEWEB)

    Dazzi, A.; Prazeres, R.; Glotin, F. [CLIO/LCP, Bat. 201, Porte 2, Universite Paris-Sud, 91405 Orsay Cedex (France); Ortega, J.M. [CLIO/LCP, Bat. 201, Porte 2, Universite Paris-Sud, 91405 Orsay Cedex (France)], E-mail: jean-michel.ortega@clio.u-psud.fr

    2007-11-15

    In this paper, we analyze in detail a new method of infrared micro-spectroscopy, which aims at performing 'chemical mapping' of various objects with sub-wavelength lateral resolution by using the infrared vibrational signature characterizing different molecular species. Its principle consists in an atomic force microscope tip, probing the local transient deformation induced by an infrared pulsed laser tuned at a sample absorbing wavelength. The cantilever oscillates at resonant frequencies, which amplitudes can be correlated with local absorption. We show that the system acts as an amplifier of extremely small motions induced by optical absorption and that different frequencies provide different informations, leading to a full description of the sample deformation. We estimate also the influence of the light confinement in the sample and exemplify the accuracy of the method by mapping Escherichia coli bacteria at different cantilever frequencies.

  19. Statistical mapping of zones of focused groundwater/surface-water exchange using fiber-optic distributed temperature sensing

    Science.gov (United States)

    Mwakanyamale, Kisa; Day-Lewis, Frederick D.; Slater, Lee D.

    2013-01-01

    Fiber-optic distributed temperature sensing (FO-DTS) increasingly is used to map zones of focused groundwater/surface-water exchange (GWSWE). Previous studies of GWSWE using FO-DTS involved identification of zones of focused GWSWE based on arbitrary cutoffs of FO-DTS time-series statistics (e.g., variance, cross-correlation between temperature and stage, or spectral power). New approaches are needed to extract more quantitative information from large, complex FO-DTS data sets while concurrently providing an assessment of uncertainty associated with mapping zones of focused GSWSE. Toward this end, we present a strategy combining discriminant analysis (DA) and spectral analysis (SA). We demonstrate the approach using field experimental data from a reach of the Columbia River adjacent to the Hanford 300 Area site. Results of the combined SA/DA approach are shown to be superior to previous results from qualitative interpretation of FO-DTS spectra alone.

  20. Assessment of an Operational System for Crop Type Map Production Using High Temporal and Spatial Resolution Satellite Optical Imagery

    Directory of Open Access Journals (Sweden)

    Jordi Inglada

    2015-09-01

    Full Text Available Crop area extent estimates and crop type maps provide crucial information for agricultural monitoring and management. Remote sensing imagery in general and, more specifically, high temporal and high spatial resolution data as the ones which will be available with upcoming systems, such as Sentinel-2, constitute a major asset for this kind of application. The goal of this paper is to assess to what extent state-of-the-art supervised classification methods can be applied to high resolution multi-temporal optical imagery to produce accurate crop type maps at the global scale. Five concurrent strategies for automatic crop type map production have been selected and benchmarked using SPOT4 (Take5 and Landsat 8 data over 12 test sites spread all over the globe (four in Europe, four in Africa, two in America and two in Asia. This variety of tests sites allows one to draw conclusions applicable to a wide variety of landscapes and crop systems. The results show that a random forest classifier operating on linearly temporally gap-filled images can achieve overall accuracies above 80% for most sites. Only two sites showed low performances: Madagascar due to the presence of fields smaller than the pixel size and Burkina Faso due to a mix of trees and crops in the fields. The approach is based on supervised machine learning techniques, which need in situ data collection for the training step, but the map production is fully automatic.

  1. Dark soliton interaction in optical time division multiplexed system with randomly varying birefringence and random dispersion map

    Institute of Scientific and Technical Information of China (English)

    Hong Li(李宏); Tiejun Wang(王铁军); Dexiu Huang(黄德修)

    2004-01-01

    Correlated perturbations caused by both randomly varying birefringence and random dispersion map are considered in optical time division multiplexed dispersion-managed dark soliton system, and their effects on soliton interaction are investigated numerically. These perturbations enhance soliton interaction, and their effects relate to the strength of perturbation, separation, and pulse width. The correlation plays an important role and reinforces these effects. Moreover, there is a stochastic limit between two perturbations in the system, where the effect is the largest and the corresponding interaction distance is the shortest.

  2. Three-dimensional optical micro-angiography maps directional blood perfusion deep within microcirculation tissue beds in vivo

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Ruikang K [Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97237 (United States)

    2007-12-07

    Optical micro-angiography (OMAG) is a recently developed method of imaging localized blood perfusion at capillary level resolution within microcirculatory beds. This paper reports that the OMAG is capable of directional blood perfusion mapping in vivo. This is achieved simply by translating the mirror located in the reference arm back and forth while 3D imaging is performed. The mirror which moves toward the incident beam gives the blood perfusion that flows away from the beam direction and vice versa. The approach is experimentally demonstrated by imaging of a flow phantom and then cerebro-vascular perfusion of a live mouse with cranium intact.

  3. Optogenetics for in vivo cardiac pacing and resynchronization therapies.

    Science.gov (United States)

    Nussinovitch, Udi; Gepstein, Lior

    2015-07-01

    Abnormalities in the specialized cardiac conduction system may result in slow heart rate or mechanical dyssynchrony. Here we apply optogenetics, widely used to modulate neuronal excitability, for cardiac pacing and resynchronization. We used adeno-associated virus (AAV) 9 to express the Channelrhodopsin-2 (ChR2) transgene at one or more ventricular sites in rats. This allowed optogenetic pacing of the hearts at different beating frequencies with blue-light illumination both in vivo and in isolated perfused hearts. Optical mapping confirmed that the source of the new pacemaker activity was the site of ChR2 transgene delivery. Notably, diffuse illumination of hearts where the ChR2 transgene was delivered to several ventricular sites resulted in electrical synchronization and significant shortening of ventricular activation times. These findings highlight the unique potential of optogenetics for cardiac pacing and resynchronization therapies.

  4. Optical and SAR sensor synergies for forest and land cover mapping in a tropical site in West Africa

    Science.gov (United States)

    Vaglio Laurin, Gaia; Liesenberg, Veraldo; Chen, Qi; Guerriero, Leila; Del Frate, Fabio; Bartolini, Antonio; Coomes, David; Wilebore, Beccy; Lindsell, Jeremy; Valentini, Riccardo

    2013-04-01

    The classification of tropical fragmented landscapes and moist forested areas is a challenge due to the presence of a continuum of vegetation successional stages, persistent cloud cover and the presence of small patches of different land cover types. To classify one such study area in West Africa we integrated the optical sensors Landsat Thematic Mapper (TM) and the Advanced Visible and Near Infrared Radiometer type 2 (AVNIR-2) with the Phased Arrayed L-band SAR (PALSAR) sensor, the latter two on-board the Advanced Land Observation Satellite (ALOS), using traditional Maximum Likelihood (MLC) and Neural Networks (NN) classifiers. The impact of texture variables and the use of SAR to cope with optical data unavailability were also investigated. SAR and optical integrated data produced the best classification overall accuracies using both MLC and NN, respectively equal to 91.1% and 92.7% for TM and 95.6% and 97.5% for AVNIR-2. Texture information derived from optical images was critical, improving results between 10.1% and 13.2%. In our study area, PALSAR alone was able to provide valuable information over the entire area: when the three forest classes were aggregated, it achieved 75.7% (with MCL) and 78.1% (with NN) overall classification accuracies. The selected classification and processing methods resulted in fine and accurate vegetation mapping in a previously untested region, exploiting all available sensors synergies and highlighting the advantages of each dataset.

  5. Measurement of signal intensity depth profiles in rat brains with cardiac arrest maintaining primary temperature by wide-field optical coherence tomography.

    Science.gov (United States)

    Sato, Manabu; Nomura, Daisuke; Tsunenari, Takashi; Nishidate, Izumi

    2010-09-10

    We have already reported that after an injection for euthanasia, the signal intensity of optical coherence tomography (OCT) images are 2.7 times increased before cardiac arrest (CA) using OCT and rat brains without temperature control to show the potential of OCT to monitor tissue viability in brains [Appl. Opt.48, 4354 (2009)APOPAI0003-693510.1364/AO.48.004354]. In this paper, we similarly measured maintaining the primary temperature of rat brains. It was confirmed that when maintaining the primary temperature, the time courses of the ratios of signal intensity (RSIs) were almost the same as those without temperature control. RSIs after CA varied from 1.6 to 4.5 and depended on positions measured in tissues. These results mean that the OCT technique has clinical potential for applications to monitor or diagnose a focal degraded area, such as cerebral infarctions due to focal ischemia in brains.

  6. High-resolution optical functional mapping of the human somatosensory cortex

    Directory of Open Access Journals (Sweden)

    Stefan P Koch

    2010-06-01

    Full Text Available Non-invasive optical imaging of brain function has been promoted in a number of fields in which functional magnetic resonance imaging (fMRI is limited due to constraints induced by the scanning environment. Beyond physiological and psychological research, bedside monitoring and neurorehabilitation may be relevant clinical applications that are yet little explored. A major obstacle to advocate the tool in clinical research is insufficient spatial resolution. Based on a multi-distance high-density optical imaging setup, we here demonstrate a dramatic increase in sensitivity of the method. We show that optical imaging allows for the differentiation between activations of single finger representations in the primary somatosensory cortex (SI. Methodologically our findings confirm results in a pioneering study by Zeff et al. (2007 and extend them to the homuncular organization of SI. After performing a motor task, 8 subjects underwent vibrotactile stimulation of the little finger and the thumb. We used a high-density diffuse-optical sensing array in conjunction with optical tomographic reconstruction. Optical imaging disclosed three discrete activation foci one for motor and 2 discrete foci for vibrotactile stimulation of the 1st and 5th finger respectively. The results were co-registered to the individual anatomical brain anatomy (MRI which confirmed the localization in the expected cortical gyri in 4 subjects. This advance in spatial resolution opens new perspectives to apply optical imaging in the research on plasticity notably in patients undergoing neurorehabilitation.

  7. Ultra-Compact Optical Spectrometer for Organic Mapping, uCOSOM (microcosm) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to develop a soda-can-size, 500 g, 400 mW instrument for mounting on small lander or rover arms: the ultra-Compact Optical Spectrometer for Organic...

  8. Ultra-Compact Optical Spectrometer for Organic Mapping, uCOSOM (microcosm) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to develop a coke-can-size, 250 g, 400 mW instrument for mounting on small lander or rover arms: the ultra-Compact Optical Spectrometer for Organic...

  9. CRED Optical Validation Data in the Auau Channel, Hawaii, April 2009 to Support Benthic Habitat Mapping

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a RCV-150 remotely operated vehicle (ROV) operated by the Hawaii Undersea Research Laboratory (HURL). Data were...

  10. CRED Optical Validation Data in the Auau Channel, Hawaii, 2007, to Support Benthic Habitat Mapping

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a RCV-150 remotely operated vehicle (ROV) operated by the Hawaii Undersea Research Laboratory (HURL). Data were...

  11. Mapping coherence in measurement via full quantum tomography of a hybrid optical detector

    CERN Document Server

    Zhang, Lijian; Datta, Animesh; Puentes, Graciana; Lundeen, Jeff S; Jin, Xian-Min; Smith, Brian J; Plenio, Martin B; Walmsley, Ian A

    2012-01-01

    Quantum states and measurements exhibit wave-like --- continuous, or particle-like --- discrete, character. Hybrid discrete-continuous photonic systems are key to investigating fundamental quantum phenomena, generating superpositions of macroscopic states, and form essential resources for quantum-enhanced applications, e.g. entanglement distillation and quantum computation, as well as highly efficient optical telecommunications. Realizing the full potential of these hybrid systems requires quantum-optical measurements sensitive to complementary observables such as field quadrature amplitude and photon number. However, a thorough understanding of the practical performance of an optical detector interpolating between these two regions is absent. Here, we report the implementation of full quantum detector tomography, enabling the characterization of the simultaneous wave and photon-number sensitivities of quantum-optical detectors. This yields the largest parametrization to-date in quantum tomography experiments...

  12. Wide-area mapping of resting state hemodynamic correlations at microvascular resolution with multi-contrast optical imaging (Conference Presentation)

    Science.gov (United States)

    Senarathna, Janaka; Hadjiabadi, Darian; Gil, Stacy; Thakor, Nitish V.; Pathak, Arvind P.

    2017-02-01

    Different brain regions exhibit complex information processing even at rest. Therefore, assessing temporal correlations between regions permits task-free visualization of their `resting state connectivity'. Although functional MRI (fMRI) is widely used for mapping resting state connectivity in the human brain, it is not well suited for `microvascular scale' imaging in rodents because of its limited spatial resolution. Moreover, co-registered cerebral blood flow (CBF) and total hemoglobin (HbT) data are often unavailable in conventional fMRI experiments. Therefore, we built a customized system that combines laser speckle contrast imaging (LSCI), intrinsic optical signal (IOS) imaging and fluorescence imaging (FI) to generate multi-contrast functional connectivity maps at a spatial resolution of 10 μm. This system comprised of three illumination sources: a 632 nm HeNe laser (for LSCI), a 570 nm ± 5 nm filtered white light source (for IOS), and a 473 nm blue laser (for FI), as well as a sensitive CCD camera operating at 10 frames per second for image acquisition. The acquired data enabled visualization of changes in resting state neurophysiology at microvascular spatial scales. Moreover, concurrent mapping of CBF and HbT-based temporal correlations enabled in vivo mapping of how resting brain regions were linked in terms of their hemodynamics. Additionally, we complemented this approach by exploiting the transit times of a fluorescent tracer (Dextran-FITC) to distinguish arterial from venous perfusion. Overall, we demonstrated the feasibility of wide area mapping of resting state connectivity at microvascular resolution and created a new toolbox for interrogating neurovascular function.

  13. Fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities

    DEFF Research Database (Denmark)

    Thar, Roland Matthias; Kühl, Michael; Holst, Gerhard

    2001-01-01

    Microscale fluorescence measurements were performed in photosynthetic biofilms at a spatial resolution of 100 to 200 µm with a new fiber-optic fluorometer which allowed four different excitation and emission wavelengths and was configured for measuring phycobiliproteins, chlorophylls, and bacteri......Microscale fluorescence measurements were performed in photosynthetic biofilms at a spatial resolution of 100 to 200 µm with a new fiber-optic fluorometer which allowed four different excitation and emission wavelengths and was configured for measuring phycobiliproteins, chlorophylls...

  14. Fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities

    DEFF Research Database (Denmark)

    Thar, Roland Matthias; Kühl, Michael; Holst, Gerhard

    2001-01-01

    Microscale fluorescence measurements were performed in photosynthetic biofilms at a spatial resolution of 100 to 200 µm with a new fiber-optic fluorometer which allowed four different excitation and emission wavelengths and was configured for measuring phycobiliproteins, chlorophylls, and bacteri......Microscale fluorescence measurements were performed in photosynthetic biofilms at a spatial resolution of 100 to 200 µm with a new fiber-optic fluorometer which allowed four different excitation and emission wavelengths and was configured for measuring phycobiliproteins, chlorophylls...

  15. Near-infrared optical monitoring of cardiac oxygen sufficiency through thoracic wall without open-chest surgery

    Science.gov (United States)

    Kakihana, Yasuyuki; Tamura, Mamoru

    1991-05-01

    The cardiac function is exquisitely sensitive to oxygen, because its energy production mainly depends on the oxidative phosphorylation at mitochondria. Thus, oxygenation state of the tissue is critical. Cytochrome a,a3, hemoglobin and myoglobin, which play indispensable role in the oxygen metabolism, have the broad absorption band in near infrared (NIR) region and the light in this region easily penetrates biological tissues. Using NIR spectrophotometry, we attempted to measure the redox state of the copper in cytochrome a,a3 in rat heart through thoracic wall without open chest. The result is given in this paper.

  16. Mapping force of interaction between PLGA nanoparticle with cell membrane using optical tweezers

    Science.gov (United States)

    Chhajed, Suyash; Gu, Ling; Homayoni, Homa; Nguyen, Kytai; Mohanty, Samarendra

    2011-03-01

    Drug delivery using magnetic (Fe 3 O4) Poly Lactic-co-Glycolic Acid (PLGA) nanoparticles is finding increasing usage in therapeutic applications due to its biodegradability, biocompatibility and targeted localization. Since optical tweezers allow non-contact, highly sensitive force measurement, we utilized optical tweezers for studying interaction forces between the Fe 3 O4 -PLGA nanoparticles with prostate cancer PC3 cells. Presence of Fe 3 O4 within the PLGA shell allowed efficient trapping of these nanoparticles in near-IR optical tweezers. The conglomerated PLGA nanoparticles could be dispersed by use of the optical tweezers. Calibration of trapping stiffness as a function of laser beam power was carried out using equipartition theorem method, where the mean square displacement was measured with high precision using time-lapse fluorescence imaging of the nanoparticles. After the trapped PLGA nanoparticle was brought in close vicinity of the PC3 cell membrane, displacement of the nanoparticle from trap center was measured as a function of time. In short time scale (30 sec) , whiletheforceofinteractionwaswithin 0.2 pN , theforceincreasedbeyond 1 pNatlongertimescales (~ 10 min). We will present the results of the time-varying force of interactions between PLGA nanoparticles with PC3 cells using optical tweezers.

  17. Optical coherence tomography angiography vessel density mapping at various retinal layers in healthy and normal tension glaucoma eyes.

    Science.gov (United States)

    Shin, Joong Won; Sung, Kyung Rim; Lee, Ji Yun; Kwon, Junki; Seong, Mincheol

    2017-06-01

    To investigate peripapillary vessel density at various spatial locations and layers in healthy and normal tension glaucoma eyes using optical coherence tomography angiography (OCTA). A commercial OCTA device (AngioPlex; Carl Zeiss Meditec) was used to image microvasculature in a 6 × 6-mm optic disc region. Vessel densities of superficial and deep retinal layers were calculated using an automatic thresholding algorithm. Vessel density maps were plotted by averaging individual angiogram images. The spatial characteristics of vessel densities were analyzed at clock-hour sectors and in five 0.7-mm-thick concentric circles from a diameter of 2.0 to 5.5 mm. Areas under the receiver operating characteristics curves (AUCs) assessed the glaucoma diagnostic ability. Vessel density maps of superficial and deep retinal layers were significantly reduced at the 7 and 11 o'clock positions in glaucomatous eyes. In superficial layer, vessel density significantly decreased as the distance from the optic disc margin increased, except in the innermost circle (2.0-2.7-mm). There were significant differences in AUCs of superficial vessel density between innermost circle and the other outer circles. In the deep layer, the innermost circle showed significantly higher vessel density than the outer circles. Vessel density at 7 o'clock showed the best diagnostic performance (AUCs, 0.898 and 0.789) both in the superficial and deep layers. The innermost circle showed eccentric feature compared to the outer circles in terms of spatial characteristics and diagnostic ability. Understanding of the spatial characteristics of peripapillary vasculature may be helpful in clinical practice and determining the optimal measurement area of vessel density.

  18. Cardiac applications of optogenetics.

    Science.gov (United States)

    Ambrosi, Christina M; Klimas, Aleksandra; Yu, Jinzhu; Entcheva, Emilia

    2014-08-01

    In complex multicellular systems, such as the brain or the heart, the ability to selectively perturb and observe the response of individual components at the cellular level and with millisecond resolution in time, is essential for mechanistic understanding of function. Optogenetics uses genetic encoding of light sensitivity (by the expression of microbial opsins) to provide such capabilities for manipulation, recording, and control by light with cell specificity and high spatiotemporal resolution. As an optical approach, it is inherently scalable for remote and parallel interrogation of biological function at the tissue level; with implantable miniaturized devices, the technique is uniquely suitable for in vivo tracking of function, as illustrated by numerous applications in the brain. Its expansion into the cardiac area has been slow. Here, using examples from published research and original data, we focus on optogenetics applications to cardiac electrophysiology, specifically dealing with the ability to manipulate membrane voltage by light with implications for cardiac pacing, cardioversion, cell communication, and arrhythmia research, in general. We discuss gene and cell delivery methods of inscribing light sensitivity in cardiac tissue, functionality of the light-sensitive ion channels within different types of cardiac cells, utility in probing electrical coupling between different cell types, approaches and design solutions to all-optical electrophysiology by the combination of optogenetic sensors and actuators, and specific challenges in moving towards in vivo cardiac optogenetics.

  19. Assessment of cardiac sympathetic nerve integrity with positron emission tomography

    Energy Technology Data Exchange (ETDEWEB)

    Raffel, David M. E-mail: raffel@umich.edu; Wieland, Donald M

    2001-07-01

    The autonomic nervous system plays a critical role in the regulation of cardiac function. Abnormalities of cardiac innervation have been implicated in the pathophysiology of many heart diseases, including sudden cardiac death and congestive heart failure. In an effort to provide clinicians with the ability to regionally map cardiac innervation, several radiotracers for imaging cardiac sympathetic neurons have been developed. This paper reviews the development of neuronal imaging agents and discusses their emerging role in the noninvasive assessment of cardiac sympathetic innervation.

  20. Mapping the bathymetry of shallow coastal water using single-frame fine-resolution optical remote sensing imagery

    Institute of Scientific and Technical Information of China (English)

    LI Jiran; ZHANG Huaguo; HOU Pengfei; FU Bin; ZHENG Gang

    2016-01-01

    This paper presents a bathymetry inversion method using single-frame fine-resolution optical remote sensing imagery based on ocean-wave refraction and shallow-water wave theory. First, the relationship among water depth, wavelength and wave radian frequency in shallow water was deduced based on shallow-water wave theory. Considering the complex wave distribution in the optical remote sensing imagery, Fast Fourier Transform (FFT) and spatial profile measurements were applied for measuring the wavelengths. Then, the wave radian frequency was calculated by analyzing the long-distance fluctuation in the wavelength, which solved a key problem in obtaining the wave radian frequency in a single-frame image. A case study was conducted for Sanya Bay of Hainan Island, China. Single-frame fine-resolution optical remote sensing imagery from QuickBird satellite was used to invert the bathymetry without external input parameters. The result of the digital elevation model (DEM) was evaluated against a sea chart with a scale of 1:25 000. The root-mean-square error of the inverted bathymetry was 1.07 m, and the relative error was 16.2%. Therefore, the proposed method has the advantages including no requirement for true depths and environmental parameters, and is feasible for mapping the bathymetry of shallow coastal water.

  1. Nanoscale mapping of optical band gaps using monochromated electron energy loss spectroscopy

    Science.gov (United States)

    Zhan, W.; Granerød, C. S.; Venkatachalapathy, V.; Johansen, K. M. H.; Jensen, I. J. T.; Kuznetsov, A. Yu; Prytz, Ø.

    2017-03-01

    Using monochromated electron energy loss spectroscopy in a probe-corrected scanning transmission electron microscope we demonstrate band gap mapping in ZnO/ZnCdO thin films with a spatial resolution below 10 nm and spectral precision of 20 meV.

  2. Distributed acoustic mapping based on interferometry of phase optical time-domain reflectometry

    Science.gov (United States)

    Wang, Chang; Wang, Chen; Shang, Ying; Liu, Xiaohui; Peng, Gangding

    2015-07-01

    We demonstrate the design and characterization of a distributed optical fiber sensing system based on Michelson interferometer of the phase sensitive optical time domain reflectometer (φ-OTDR) for acoustic measurement. Phase, amplitude, frequency response and location information can be directly obtained at the same time by using the passive 3×3 coupler demodulation. In order to simulate sound profiles of seismic or hydroacoustic imaging, experiments on detection of multiple piezoelectric transducers (PZT) are carried out. The result shows that our system can well demodulate different acoustic sources with different intensities.

  3. Analysis of fundus shape in highly myopic eyes by using curvature maps constructed from optical coherence tomography.

    Directory of Open Access Journals (Sweden)

    Masahiro Miyake

    Full Text Available PURPOSE: To evaluate fundus shape in highly myopic eyes using color maps created through optical coherence tomography (OCT image analysis. METHODS: We retrospectively evaluated 182 highly myopic eyes from 113 patients. After obtaining 12 lines of 9-mm radial OCT scans with the fovea at the center, the Bruch's membrane line was plotted and its curvature was measured at 1-µm intervals in each image, which was reflected as a color topography map. For the quantitative analysis of the eye shape, mean absolute curvature and variance of curvature were calculated. RESULTS: The color maps allowed staphyloma visualization as a ring of green color at the edge and as that of orange-red color at the bottom. Analyses of mean and variance of curvature revealed that eyes with myopic choroidal neovascularization tended to have relatively flat posterior poles with smooth surfaces, while eyes with chorioretinal atrophy exhibited a steep, curved shape with an undulated surface (P<0.001. Furthermore, eyes with staphylomas and those without clearly differed in terms of mean curvature and the variance of curvature: 98.4% of eyes with staphylomas had mean curvature ≥7.8×10-5 [1/µm] and variance of curvature ≥0.26×10-8 [1/µm]. CONCLUSIONS: We established a novel method to analyze posterior pole shape by using OCT images to construct curvature maps. Our quantitative analysis revealed that fundus shape is associated with myopic complications. These values were also effective in distinguishing eyes with staphylomas from those without. This tool for the quantitative evaluation of eye shape should facilitate future research of myopic complications.

  4. Single molecule mapping of the optical field distribution of probes for near-field microscopy

    NARCIS (Netherlands)

    Veerman, J.A.; Garcia Parajo, M.F.; Kuipers, L.; van Hulst, N.F.

    1999-01-01

    The most difficult task in near-field scanning optical microscopy (NSOM) is to make a high quality subwavelength aperture probe, Recently we have developed high definition NSOM probes by focused ion beam (FIB) milling. These probes have a higher brightness, better polarization characteristics,

  5. High-Resolution Radial Velocity Mapping of Optical Filaments in Evolved Supernova Remnants

    Science.gov (United States)

    Greidanus, H.; Strom, R. G.

    The authors report on observations of the kinematical structure of optical filaments in evolved supernova remnants, using an imaging Fabry-Perot interferometer. The radial velocity characteristics as seen in [O III] λ5007 emission in one area in the Cygnus Loop are described, where four kinematically different components contributing to the emission can be recognized.

  6. Development of wearable optical topography system for mapping the prefrontal cortex activation

    Science.gov (United States)

    Atsumori, Hirokazu; Kiguchi, Masashi; Obata, Akiko; Sato, Hiroki; Katura, Takusige; Funane, Tsukasa; Maki, Atsushi

    2009-04-01

    Optical topography (OT) based on near infrared spectroscopy is effective for measuring changes in the concentrations of oxygenated hemoglobin (oxy-Hb) and deoxygenated hemoglobin (deoxy-Hb) in the brain. It can be used to investigate brain functions of subjects of all ages because it is noninvasive and less constraining for subjects. Conventional OT systems use optical fibers to irradiate the scalp and detect light transmitted through the tissue in the human head, but optical fibers limit the subject's head position, so some small systems have been developed without using optical fibers. These systems, however, have a small number of measurement channels. We developed a prototype of a small, light, and wearable OT system that covers the entire forehead. We measured changes in the concentrations of oxy-Hb and deoxy-Hb in the prefrontal cortex while a subject performed a word fluency task. The results show typical changes in oxy-Hb and deoxy-Hb during the task and suggest that the prototype of our system can be used to investigate functions in the prefrontal cortex.

  7. Single molecule mapping of the optical field distribution of probes for near-field microscopy

    NARCIS (Netherlands)

    Veerman, J.A.; Garcia-Parajo, M.F.; Kuipers, L.; Hulst, van N.F.

    1999-01-01

    The most difficult task in near-field scanning optical microscopy (NSOM) is to make a high quality subwavelength aperture probe, Recently we have developed high definition NSOM probes by focused ion beam (FIB) milling. These probes have a higher brightness, better polarization characteristics, bette

  8. Pose and Motion from Omnidirectional Optical Flow and a Digital Terrain Map

    CERN Document Server

    Lerner, Ronen; Rivlin, Ehud; 10.1109/IROS.2006.282569

    2011-01-01

    An algorithm for pose and motion estimation using corresponding features in omnidirectional images and a digital terrain map is proposed. In previous paper, such algorithm for regular camera was considered. Using a Digital Terrain (or Digital Elevation) Map (DTM/DEM) as a global reference enables recovering the absolute position and orientation of the camera. In order to do this, the DTM is used to formulate a constraint between corresponding features in two consecutive frames. In this paper, these constraints are extended to handle non-central projection, as is the case with many omnidirectional systems. The utilization of omnidirectional data is shown to improve the robustness and accuracy of the navigation algorithm. The feasibility of this algorithm is established through lab experimentation with two kinds of omnidirectional acquisition systems. The first one is polydioptric cameras while the second is catadioptric camera.

  9. Mapping soil salinity in irrigated land using optical remote sensing data

    Directory of Open Access Journals (Sweden)

    Rachid Lhissoui

    2014-04-01

    Full Text Available Soil salinity caused by natural or human-induced processes is certainly a severe environmental problem that already affects 400 million hectares and seriously threatens an equivalent surface. Salinization causes negative effects on the ground; it affects agricultural production, infrastructure, water resources and biodiversity. In semi-arid and arid areas, 21% of irrigated lands suffer from waterlogging, salinity and/or sodicity that reduce their yields. 77 million hectares are saline soils induced by human activity, including 58% in the irrigated areas. In the irrigated perimeter of Tadla plain (central Morocco, the increased use of saline groundwater and surface water, coupled with agricultural intensification leads to the deterioration of soil quality. Experimental methods for monitoring soil salinity by direct measurements in situ are very demanding of time and resources, and also very limited in terms of spatial coverage. Several studies have described the usefulness of remote sensing for mapping salinity by its synoptic coverage and the sensitivity of the electromagnetic signal to surface soil parameters. In this study, we used an image of the TM Landsat sensor and field measurements of electrical conductivity (EC, the correlation between the image data and field measurements allowed us to develop a semi-empirical model allowing the mapping of soil salinity in the irrigated perimeter of Tadla plain. The validation of this model by the ground truth provides a correlation coefficient r² = 0.90. Map obtained from this model allows the identification of different salinization classes in the study area.

  10. Cardiac arrest

    Science.gov (United States)

    ... Article.jsp. Accessed June 16, 2014. Myerburg RJ, Castellanos A. Approach to cardiac arrest and life-threatening ... PA: Elsevier Saunders; 2011:chap 63. Myerburg RJ, Castellanos A. Cardiac arrest and audden aardiac death. In: ...

  11. High-Resolution Optical Functional Mapping of the Human Somatosensory Cortex

    OpenAIRE

    Koch, Stefan P.; Habermehl, Christina; Mehnert, Jan; Schmitz, Christoph H.; Holtze, Susanne; Villringer, Arno; Steinbrink, Jens; Obrig, Hellmuth

    2010-01-01

    Non-invasive optical imaging of brain function has been promoted in a number of fields in which functional magnetic resonance imaging (fMRI) is limited due to constraints induced by the scanning environment. Beyond physiological and psychological research, bedside monitoring and neurorehabilitation may be relevant clinical applications that are yet little explored. A major obstacle to advocate the tool in clinical research is insufficient spatial resolution. Based on a multi-distance high-den...

  12. High-resolution optical functional mapping of the human somatosensory cortex

    OpenAIRE

    Koch, Stefan P.; Christina Habermehl; Jan Mehnert; Schmitz, Christoph H.; Susanne Holtze; Arno Villringer; Jens Steinbrink; Hellmuth Obrig

    2010-01-01

    Non-invasive optical imaging of brain function has been promoted in a number of fields in which functional magnetic resonance imaging (fMRI) is limited due to constraints induced by the scanning environment. Beyond physiological and psychological research, bedside monitoring and neurorehabilitation may be relevant clinical applications that are yet little explored. A major obstacle to advocate the tool in clinical research is insufficient spatial resolution. Based on a multi-distance high-den...

  13. Feasibility of correlation mapping optical coherence tomography (cmOCT) for anti-spoof sub-surface fingerprinting.

    Science.gov (United States)

    Zam, Azhar; Dsouza, Roshan; Subhash, Hrebesh M; O'Connell, Marie-Louise; Enfield, Joey; Larin, Kirill; Leahy, Martin J

    2013-09-01

    We propose the use of correlation mapping optical coherence tomography (cmOCT) to deliver additional biometrics associated with the finger that could complement existing fingerprint technology for law enforcement applications. The current study extends the existing fingerprint paradigm by measuring additional biometrics associated with sub-surface finger tissue such as sub-surface fingerprints, sweat glands, and the pattern of the capillary bed to yield a user-friendly cost effective and anti-spoof multi-mode biometric solution associated with the finger. To our knowledge no other method has been able to capture sub-surface fingerprint, papillary pattern and horizontal vessel pattern in a single scan or to show the correspondence between these patterns in live adult human fingertip. Unlike many current technologies this approach incorporates 'liveness' testing by default. The ultimate output is a biometric module which is difficult to defeat and complements fingerprint scanners that currently are used in border control and law enforcement applications.

  14. De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.

    Science.gov (United States)

    Olsen, Remi-Andre; Bunikis, Ignas; Tiukova, Ievgeniia; Holmberg, Kicki; Lötstedt, Britta; Pettersson, Olga Vinnere; Passoth, Volkmar; Käller, Max; Vezzi, Francesco

    2015-01-01

    It remains a challenge to perform de novo assembly using next-generation sequencing (NGS). Despite the availability of multiple sequencing technologies and tools (e.g., assemblers) it is still difficult to assemble new genomes at chromosome resolution (i.e., one sequence per chromosome). Obtaining high quality draft assemblies is extremely important in the case of yeast genomes to better characterise major events in their evolutionary history. The aim of this work is two-fold: on the one hand we want to show how combining different and somewhat complementary technologies is key to improving assembly quality and correctness, and on the other hand we present a de novo assembly pipeline we believe to be beneficial to core facility bioinformaticians. To demonstrate both the effectiveness of combining technologies and the simplicity of the pipeline, here we present the results obtained using the Dekkera bruxellensis genome. In this work we used short-read Illumina data and long-read PacBio data combined with the extreme long-range information from OpGen optical maps in the task of de novo genome assembly and finishing. Moreover, we developed NouGAT, a semi-automated pipeline for read-preprocessing, de novo assembly and assembly evaluation, which was instrumental for this work. We obtained a high quality draft assembly of a yeast genome, resolved on a chromosomal level. Furthermore, this assembly was corrected for mis-assembly errors as demonstrated by resolving a large collapsed repeat and by receiving higher scores by assembly evaluation tools. With the inclusion of PacBio data we were able to fill about 5 % of the optical mapped genome not covered by the Illumina data.

  15. Stroboscobic near-field scanning optical microscopy for 3D mapping of mode profiles of plasmonic nanostructures (Conference Presentation)

    Science.gov (United States)

    Dana, Aykutlu; Ozgur, Erol; Torunoglu, Gamze

    2016-09-01

    We present a dynamic approach to scanning near field optical microscopy that extends the measurement technique to the third dimension, by strobing the illumination in sync with the cantilever oscillation. Nitrogen vacancy (NV) centers in nanodiamonds placed on cantilever tips are used as stable emitters for emission enhancement. Local field enhancement and modulation of optical density states are mapped in three dimensions based on fluorescence intensity and spectrum changes as the tip is scanned over plasmonic nanostructures. The excitation of NV centers is done using a total internal reflection setup. Using a digital phase locked loop to pulse the excitation in various tip sample separations, 2D slices of fluorescence enhancement can be recorded. Alternatively, a conventional SNOM tip can be used to selectively couple wideband excitation to the collection path, with subdiffraction resolution of 60 nm in x and y and 10 nm in z directions. The approach solves the problem of tip-sample separation stabilization over extended periods of measurement time, required to collect data resolved in emission wavelength and three spatial dimensions. The method can provide a unique way of accessing the three dimensional field and mode profiles of nanophotonics structures.

  16. Mapping of two-polarization-mode dynamics in vertical-cavity surface-emitting lasers with optical injection.

    Science.gov (United States)

    Gatare, I; Sciamanna, M; Nizette, M; Thienpont, H; Panajotov, K

    2009-08-01

    We report theoretically on the interplay between polarization switching and bifurcations to nonlinear dynamics in a vertical-cavity surface-emitting laser (VCSEL) subject to orthogonal optical injection. Qualitatively different bifurcation scenarios leading to polarization switching are found and mapped out in the plane of the injection parameters, i.e., the frequency detuning vs injection strength plane. A Hopf bifurcation mechanism on the two-polarization-mode solution determines the injection-locking boundaries and influences polarization switching induced by optical injection. We furthermore report on a torus bifurcation emerging from a two-linearly polarized (LP) mode time-periodic dynamics before polarization switching and injection locking appear. It corresponds to an interesting combination of relaxation oscillation dynamics in the x -LP mode together with wave mixing dynamics in the injected y -LP mode. In agreement with recent experiments, we unveil a period-doubling route to chaos that involves both VCSEL orthogonal LP modes. The corresponding region of chaotic dynamics coincides with abrupt changes in the polarization switching boundaries in the plane of the injection parameters.

  17. Fiber-bundle microendoscopy with sub-diffuse reflectance spectroscopy and intensity mapping for multimodal optical biopsy of stratified epithelium.

    Science.gov (United States)

    Greening, Gage J; James, Haley M; Powless, Amy J; Hutcheson, Joshua A; Dierks, Mary K; Rajaram, Narasimhan; Muldoon, Timothy J

    2015-12-01

    Early detection of structural or functional changes in dysplastic epithelia may be crucial for improving long-term patient care. Recent work has explored myriad non-invasive or minimally invasive "optical biopsy" techniques for diagnosing early dysplasia, such as high-resolution microendoscopy, a method to resolve sub-cellular features of apical epithelia, as well as broadband sub-diffuse reflectance spectroscopy, a method that evaluates bulk health of a small volume of tissue. We present a multimodal fiber-based microendoscopy technique that combines high-resolution microendoscopy, broadband (450-750 nm) sub-diffuse reflectance spectroscopy (sDRS) at two discrete source-detector separations (374 and 730 μm), and sub-diffuse reflectance intensity mapping (sDRIM) using a 635 nm laser. Spatial resolution, magnification, field-of-view, and sampling frequency were determined. Additionally, the ability of the sDRS modality to extract optical properties over a range of depths is reported. Following this, proof-of-concept experiments were performed on tissue-simulating phantoms made with poly(dimethysiloxane) as a substrate material with cultured MDA-MB-468 cells. Then, all modalities were demonstrated on a human melanocytic nevus from a healthy volunteer and on resected colonic tissue from a murine model. Qualitative in vivo image data is correlated with reduced scattering and absorption coefficients.

  18. Simple and cost-effective hardware and software for functional brain mapping using intrinsic optical signal imaging.

    Science.gov (United States)

    Harrison, Thomas C; Sigler, Albrecht; Murphy, Timothy H

    2009-09-15

    We describe a simple and low-cost system for intrinsic optical signal (IOS) imaging using stable LED light sources, basic microscopes, and commonly available CCD cameras. IOS imaging measures activity-dependent changes in the light reflectance of brain tissue, and can be performed with a minimum of specialized equipment. Our system uses LED ring lights that can be mounted on standard microscope objectives or video lenses to provide a homogeneous and stable light source, with less than 0.003% fluctuation across images averaged from 40 trials. We describe the equipment and surgical techniques necessary for both acute and chronic mouse preparations, and provide software that can create maps of sensory representations from images captured by inexpensive 8-bit cameras or by 12-bit cameras. The IOS imaging system can be adapted to commercial upright microscopes or custom macroscopes, eliminating the need for dedicated equipment or complex optical paths. This method can be combined with parallel high resolution imaging techniques such as two-photon microscopy.

  19. Mapping the Optical Absorption of a Substrate-Transferred Crystalline AlGaAs Coating at 1.5um

    CERN Document Server

    Steinlechner, Jessica; Bell, Angus; Cole, Garrett; Hough, Jim; Penn, Steven; Rowan, Sheila; Steinlechner, Sebastian

    2014-01-01

    The sensitivity of 2nd and 3rd generations of interferometric gravitational wave detectors will be limited by thermal noise of the test-mass mirrors and highly reflective coatings. Recently developed crystalline coatings show a promising thermal noise reduction compared to presently used amorphous coatings. However, stringent requirements apply to the optical properties of the coatings as well. We have mapped the optical absorption of a crystalline AlGaAs coating which is optimized for high reflectivity for a wavelength of 1064nm. The absorption was measured at 1550nm where the coating stack transmits approximately 70% of the laser light. The measured absorption was lower than (30.2 +/- 11.1)ppm which is equivalent to (3.6 +/- 1.3)ppm for a coating stack that is highly reflective at 1530nm. While this is a very promising low absorption result for alternative low--loss coating materials, further work will be necessary to reach the requirements of <1ppm for future gravitational wave detectors.

  20. Electron transfer in a virtual quantum state of LiBH4 induced by strong optical fields and mapped by femtosecond x-ray diffraction.

    Science.gov (United States)

    Stingl, J; Zamponi, F; Freyer, B; Woerner, M; Elsaesser, T; Borgschulte, A

    2012-10-05

    Transient polarizations connected with a spatial redistribution of electronic charge in a mixed quantum state are induced by optical fields of high amplitude. We determine for the first time the related transient electron density maps, applying femtosecond x-ray powder diffraction as a structure probe. The prototype ionic material LiBH4 driven nonresonantly by an intense sub-40 fs optical pulse displays a large-amplitude fully reversible electron transfer from the BH4(-) anion to the Li+ cation during excitation. Our results establish this mechanism as the source of the strong optical polarization which agrees quantitatively with theoretical estimates.

  1. 4D shear stress maps of the developing heart using Doppler optical coherence tomography.

    Science.gov (United States)

    Peterson, Lindsy M; Jenkins, Michael W; Gu, Shi; Barwick, Lee; Watanabe, Michiko; Rollins, Andrew M

    2012-11-01

    Accurate imaging and measurement of hemodynamic forces is vital for investigating how physical forces acting on the embryonic heart are transduced and influence developmental pathways. Of particular importance is blood flow-induced shear stress, which influences gene expression by endothelial cells and potentially leads to congenital heart defects through abnormal heart looping, septation, and valvulogenesis. However no imaging tool has been available to measure shear stress on the endocardium volumetrically and dynamically. Using 4D structural and Doppler OCT imaging, we are able to accurately measure the blood flow in the heart tube in vivo and to map endocardial shear stress throughout the heart cycle under physiological conditions for the first time. These measurements of the shear stress patterns will enable precise titration of experimental perturbations and accurate correlation of shear with the expression of molecules critical to heart development.

  2. Mapping the optical properties of slab-type two-dimensional photonic crystal waveguides

    CERN Document Server

    Dulkeith, E; Vlasov, Y A; Dulkeith, Eric; Nab, Sharee J. Mc; Vlasov, Yurii A.

    2005-01-01

    We report on systematic experimental mapping of the transmission properties of two-dimensional silicon-on-insulator photonic crystal waveguides for a broad range of hole radii, slab thicknesses and waveguide lengths for both TE and TM polarizations. Detailed analysis of numerous spectral features allows a direct comparison of experimental data with 3D plane wave and finite-difference time-domain calculations. We find, counter-intuitively, that the bandwidth for low-loss propagation completely vanishes for structural parameters where the photonic band gap is maximized. Our results demonstrate that, in order to maximize the bandwidth of low-loss waveguiding, the hole radius must be significantly reduced. While the photonic band gap considerably narrows, the bandwidth of low-loss propagation in PhC waveguides is increased up to 125nm with losses as low as 8$\\pm$2dB/cm.

  3. Error Analysis for a Navigation Algorithm based on Optical-Flow and a Digital Terrain Map

    CERN Document Server

    Kupervasser, Oleg; Rivlin, Ehud; 10.1109/PLANS.2008.4570040

    2011-01-01

    The paper deals with the error analysis of a navigation algorithm that uses as input a sequence of images acquired by a moving camera and a Digital Terrain Map (DTM) of the region been imaged by the camera during the motion. The main sources of error are more or less straightforward to identify: camera resolution, structure of the observed terrain and DTM accuracy, field of view and camera trajectory. After characterizing and modeling these error sources in the framework of the CDTM algorithm, a closed form expression for their effect on the pose and motion errors of the camera can be found. The analytic expression provides a priori measurements for the accuracy in terms of the parameters mentioned above.

  4. Particle-based optical pressure sensors for 3D pressure mapping.

    Science.gov (United States)

    Banerjee, Niladri; Xie, Yan; Chalaseni, Sandeep; Mastrangelo, Carlos H

    2015-10-01

    This paper presents particle-based optical pressure sensors for in-flow pressure sensing, especially for microfluidic environments. Three generations of pressure sensitive particles have been developed- flat planar particles, particles with integrated retroreflectors and spherical microballoon particles. The first two versions suffer from pressure measurement dependence on particles orientation in 3D space and angle of interrogation. The third generation of microspherical particles with spherical symmetry solves these problems making particle-based manometry in microfluidic environment a viable and efficient methodology. Static and dynamic pressure measurements have been performed in liquid medium for long periods of time in a pressure range of atmospheric to 40 psi. Spherical particles with radius of 12 μm and balloon-wall thickness of 0.5 μm are effective for more than 5 h in this pressure range with an error of less than 5%.

  5. Multimodal optical imaging and spectroscopy for the intraoperative mapping of nonmelanoma skin cancer

    Science.gov (United States)

    Salomatina, Elena; Muzikansky, Alona; Neel, Victor; Yaroslavsky, Anna N.

    2009-05-01

    Basal cell carcinoma (BCC) is the most common human malignancy, and its incidence increases yearly. In this contribution we investigate the feasibility of combining multimodal reflectance and fluorescence polarization imaging (RFPI) with spectroscopic analysis of the reflectance images for facilitating intraoperative delineation of BCCs. Twenty fresh thick BCC specimens were obtained within 1 h after Mohs micrographic surgeries. The samples were soaked for up to 2 min in an aqueous 0.2 mg/ml solution of methylene blue, briefly rinsed in saline solution, and imaged. Reflectance images were acquired in the range from 395 to 735 nm, with steps of 10 nm. Fluorescence polarization images were excited at 630 nm and registered in the range between 660 and 750 nm. The results yielded by RFPI were qualitatively compared to each other and to histopathology. From the copolarized reflectance images the spectral responses including the optical densities and their wavelength derivatives were calculated. The differences in the spectral responses of the benign and malignant stained skin structures were assessed. Statistical analysis, i.e., Student's t-test, was employed to verify the significance of the discovered differences. Both reflectance and fluorescence polarization images correlated well with histopathology in all the cases. Reflectance polarization images provided more detailed information on skin morphology, with the appearance of skin structures resembling that of histopathology. Fluorescence polarization images exhibited higher contrast of cancerous tissue as compared to reflectance imaging. The analysis of the optical densities and their wavelength derivatives for tumor and normal tissues has confirmed statistical significance of the differences that can be used for intraoperative cancer delineation. The results of the study indicate that spectral analysis is a useful adjunct to RFPI for facilitating skin cancer delineation.

  6. Ultrahigh phase-stable swept-source optical coherence tomography as a cardiac imaging platform (Conference Presentation)

    Science.gov (United States)

    Ling, Yuye; Hendon, Christine P.

    2016-02-01

    Functional extensions to optical coherence tomography (OCT) provide useful imaging contrasts that are complementary to conventional OCT. Our goal is to characterize tissue types within the myocardial due to remodeling and therapy. High-speed imaging is necessary to extract mechanical properties and dynamics of fiber orientation changes in a beating heart. Functional extensions of OCT such as polarization sensitive and optical coherence elastography (OCE) require high phase stability of the system, which is a drawback of current mechanically tuned swept source OCT systems. Here we present a high-speed functional imaging platform, which includes an ultrahigh-phase-stable swept source equipped with KTN deflector from NTT-AT. The swept source does not require mechanical movements during the wavelength sweeping; it is electrically tuned. The inter-sweep phase variance of the system was measured to be less than 300 ps at a path length difference of ~2 mm. The axial resolution of the system is 20 µm and the -10 dB fall-off depth is about 3.2 mm. The sample arm has an 8 mmx8 mm field of view with a lateral resolution of approximately 18 µm. The sample arm uses a two-axis MEMS mirror, which is programmable and capable of scanning arbitrary patterns at a sampling rate of 50 kHz. Preliminary imaging results showed differences in polarization properties and image penetration in ablated and normal myocardium. In the future, we will conduct dynamic stretching experiments with strips of human myocardial tissue to characterize mechanical properties using OCE. With high speed imaging of 200 kHz and an all-fiber design, we will work towards catheter-based functional imaging.

  7. A high-resolution optical measurement system for rapid acquisition of radiation flux density maps

    Science.gov (United States)

    Thelen, Martin; Raeder, Christian; Willsch, Christian; Dibowski, Gerd

    2017-06-01

    To identify the power and flux density of concentrated solar radiation the Institute of Solar Research at the German Aerospace Center (DLR - Deutsches Zentrum für Luft-und Raumfahrt e. V.) has used the camera-based measurement system FATMES (Flux and Temperature Measurement System) since 1995. The disadvantages of low resolution, difficult handling and poor computing power required a revision of the existing measurement system. The measurement system FMAS (Flux Mapping Acquisition system) is equipped with state-of-the-art-hardware, is compatible with computers off-the-shelf and is programmed in LabView. The expenditure of time for an image evaluation is reduced by the factor 60 compared to FATMES. The new measurement system is no longer associated with the facilities Solar Furnace and High Flux Solar Simulator at the DLR in Cologne but is also applicable as a mobile system. The data and the algorithms are transparent throughout the complete process. The measurement accuracy of FMAS is determined to at most ±3 % until now. The error of measurement of FATMES is at least 2 % higher according to the conducted comparison tests.

  8. Optics

    CERN Document Server

    Fincham, W H A

    2013-01-01

    Optics: Ninth Edition Optics: Ninth Edition covers the work necessary for the specialization in such subjects as ophthalmic optics, optical instruments and lens design. The text includes topics such as the propagation and behavior of light; reflection and refraction - their laws and how different media affect them; lenses - thick and thin, cylindrical and subcylindrical; photometry; dispersion and color; interference; and polarization. Also included are topics such as diffraction and holography; the limitation of beams in optical systems and its effects; and lens systems. The book is recommen

  9. The Lick AGN Monitoring Project: Reverberation Mapping of Optical Hydrogen and Helium Recombination Lines

    CERN Document Server

    Bentz, Misty C; Barth, Aaron J; Yoshii, Yuzuru; Woo, Jong-Hak; Wang, Xiaofeng; Treu, Tommaso; Thornton, Carol E; Street, Rachel A; Steele, Thea N; Silverman, Jeffrey M; Serduke, Frank J D; Sakata, Yu; Minezaki, Takeo; Malkan, Matthew A; Li, Weidong; Lee, Nicholas; Hiner, Kyle D; Hidas, Marton G; Greene, Jenny E; Gates, Elinor L; Ganeshalingam, Mohan; Filippenko, Alexei V; Canalizo, Gabriela; Bennert, Vardha Nicola; Baliber, Nairn

    2010-01-01

    We have recently completed a 64-night spectroscopic monitoring campaign at the Lick Observatory 3-m Shane telescope with the aim of measuring the masses of the black holes in 12 nearby (z < 0.05) Seyfert 1 galaxies with expected masses in the range ~10^6-10^7M_sun and also the well-studied nearby active galactic nucleus (AGN) NGC 5548. Nine of the objects in the sample (including NGC 5548) showed optical variability of sufficient strength during the monitoring campaign to allow for a time lag to be measured between the continuum fluctuations and the response to these fluctuations in the broad Hbeta emission, which we have previously reported. We present here the light curves for the Halpha, Hgamma, HeII 4686, and HeI 5876 emission lines and the time lags for the emission-line responses relative to changes in the continuum flux. Combining each emission-line time lag with the measured width of the line in the variable part of the spectrum, we determine a virial mass of the central supermassive black hole fro...

  10. Hyperscale Analysis of River Morphology Though Optical Remote Mapping of Water Depths

    Science.gov (United States)

    Fonstad, M. A.

    2007-12-01

    The science of in-channel river processes and forms has profited enormously from the introduction of specialized remote sensing tools such as LiDAR and hyperspectral imaging during the past decade. However, the cost and lack of historical data make them a less than ideal choice for many geomorphic questions. As an alternative to high-performance technology, a new analytical technique applied to older color aerial imagery allows extraction of the three-dimensional river environment over enormous distances. In clearwater rivers, some light often reaches the riverbed and returns to the surface, providing optical information about different components of the physical habitat structure. The HAB-2 transform combines the Beer-Lambert law of light absorption with hydrodynamic rules to allow the estimation of river depth at each image pixel, and it allows separation of the depth effect from the remaining image information. The widespread availability of CIR digital orthophotoquads across much of the United States allows the use of HAB approaches to extract three dimensional data for large area riverscapes at scales from about a meter to that of the entire watershed. The rapid and widespread utility of image-based river DTMs allows hitherto unparalleled investigation of geomorphic structures. As one example of this utility, HAB- calibrated high-resolution imagery of the Nueces River watershed, Texas, shows systematic deviations from the classic theory of the downstream hydraulic geometry as well as an unprecedented level of randomness at most scales.

  11. Space Telescope and Optical Reverberation Mapping Project. VI. Reverberating Disk Models for NGS 5548

    Science.gov (United States)

    Starkey, D.; Gehrels, Cornelis; Horne, Keith; Fausnaugh, M. M.; Peterson, B. M.; Bentz, M. C.; Kochanek, C. S.; Denney, K. D.; Edelson, R.; Goad, M. R.; hide

    2017-01-01

    We conduct a multi-wavelength continuum variability study of the Seyfert 1 galaxy NGC 5548 to investigate the temperature structure of its accretion disk. The 19 overlapping continuum light curves (1158 Angstrom to 9157 Angstrom) combine simultaneous Hubble Space Telescope, Swift, and ground-based observations over a 180 day period from 2014 January to July. Light-curve variability is interpreted as the reverberation response of the accretion disk to irradiation by a central time-varying point source. Our model yields the disk inclination i = 36deg +/- 10deg, temperature T(sub 1) = (44+/-6) times 10 (exp 3)K at 1 light day from the black hole, and a temperature radius slope (T proportional to r (exp -alpha)) of alpha = 0.99 +/- 0.03. We also infer the driving light curve and find that it correlates poorly with both the hard and soft X-ray light curves, suggesting that the X-rays alone may not drive the ultraviolet and optical variability over the observing period. We also decompose the light curves into bright, faint, and mean accretion-disk spectra. These spectra lie below that expected for a standard blackbody accretion disk accreting at L/L(sub Edd) = 0.1.

  12. Space Telescope and Optical Reverberation Mapping Project.VI. Reverberating Disk Models for NGC 5548

    Science.gov (United States)

    Starkey, D.; Horne, Keith; Fausnaugh, M. M.; Peterson, B. M.; Bentz, M. C.; Kochanek, C. S.; Denney, K. D.; Edelson, R.; Goad, M. R.; De Rosa, G.; Anderson, M. D.; Arévalo, P.; Barth, A. J.; Bazhaw, C.; Borman, G. A.; Boroson, T. A.; Bottorff, M. C.; Brandt, W. N.; Breeveld, A. A.; Cackett, E. M.; Carini, M. T.; Croxall, K. V.; Crenshaw, D. M.; Dalla Bontà, E.; De Lorenzo-Cáceres, A.; Dietrich, M.; Efimova, N. V.; Ely, J.; Evans, P. A.; Filippenko, A. V.; Flatland, K.; Gehrels, N.; Geier, S.; Gelbord, J. M.; Gonzalez, L.; Gorjian, V.; Grier, C. J.; Grupe, D.; Hall, P. B.; Hicks, S.; Horenstein, D.; Hutchison, T.; Im, M.; Jensen, J. J.; Joner, M. D.; Jones, J.; Kaastra, J.; Kaspi, S.; Kelly, B. C.; Kennea, J. A.; Kim, S. C.; Kim, M.; Klimanov, S. A.; Korista, K. T.; Kriss, G. A.; Lee, J. C.; Leonard, D. C.; Lira, P.; MacInnis, F.; Manne-Nicholas, E. R.; Mathur, S.; McHardy, I. M.; Montouri, C.; Musso, R.; Nazarov, S. V.; Norris, R. P.; Nousek, J. A.; Okhmat, D. N.; Pancoast, A.; Parks, J. R.; Pei, L.; Pogge, R. W.; Pott, J.-U.; Rafter, S. E.; Rix, H.-W.; Saylor, D. A.; Schimoia, J. S.; Schnülle, K.; Sergeev, S. G.; Siegel, M. H.; Spencer, M.; Sung, H.-I.; Teems, K. G.; Turner, C. S.; Uttley, P.; Vestergaard, M.; Villforth, C.; Weiss, Y.; Woo, J.-H.; Yan, H.; Young, S.; Zheng, W.; Zu, Y.

    2017-01-01

    We conduct a multiwavelength continuum variability study of the Seyfert 1 galaxy NGC 5548 to investigate the temperature structure of its accretion disk. The 19 overlapping continuum light curves (1158 \\mathringA to 9157 \\mathringA ) combine simultaneous Hubble Space Telescope, Swift, and ground-based observations over a 180 day period from 2014 January to July. Light-curve variability is interpreted as the reverberation response of the accretion disk to irradiation by a central time-varying point source. Our model yields the disk inclination i=36^\\circ +/- 10^\\circ , temperature {T}1=(44+/- 6)× {10}3 K at 1 light day from the black hole, and a temperature-radius slope (T\\propto {r}-α ) of α =0.99+/- 0.03. We also infer the driving light curve and find that it correlates poorly with both the hard and soft X-ray light curves, suggesting that the X-rays alone may not drive the ultraviolet and optical variability over the observing period. We also decompose the light curves into bright, faint, and mean accretion-disk spectra. These spectra lie below that expected for a standard blackbody accretion disk accreting at L/{L}{Edd}=0.1.

  13. Space Telescope and Optical Reverberation Mapping Project I: reverberating Disk Models for NGC 5548

    CERN Document Server

    Starkey, D; Fausnaugh, M M; Peterson, B M; Bentz, M C; Kochanek, C S; Denney, K D; Edelson, R; Goad, M R; De Rosa, G; Anderson, M D; Arevalo, P; Barth, A J; Bazhaw, C; Borman, G A; Boroson, T A; Bottorff, M C; Brandt, W N; Breeveld, A A; Cackett, E M; Carini, M T; Croxall, K V; Crenshaw, D M; Bonta, E Dalla; De Lorenzo-Caceres, A; Dietrich, M; Efimova, N V; Ely, J; Evans, P A; Filippenko, A V; Flatland, K; Gehrels, N; Geier, S; Gelbord, J M; Gonzalez, L; Gorjian, V; Grier, C J; Grupe, D; Hall, P B; Hicks, S; Horenstein, D; Hutchison, T; Im, M; Jensen, J J; Joner, M D; Jones, J; Kaastra, J; Kaspi, S; Kelly, B C; Kennea, J A; Kim, S C; Kim, M; Klimanov, S A; Korista, K T; Kriss, G A; Lee, J C; Leonard, D C; Lira, P; MacInnis, F; Manne-Nicholas, E R; Mathur, S; McHardy, I M; Montouri, C; Musso, R; Nazarov, S V; Norris, R P; Nousek, J A; Okhmat, D N; Pancoast, A; Parks, J R; Pei, L; Pogge, R W; Pott, J -U; Rafter, S E; Rix, H W; Saylor, D A; Schimoia, J S; Schnulle, K; Sergeev, S G; Siegel, M H; Spencer, M; Sung, H -I; Teems, K G; Turner, C S; Uttley, P; Vestergaard, M; Villforth, C; Weiss, Y; Woo, J -H; Yan, H; Young, S; Zheng, W; Zu, Y

    2016-01-01

    We conduct a multiwavelength continuum variability study of the Seyfert 1 galaxy NGC 5548 to investigate the temperature structure of its accretion disk. The 19 overlapping continuum light curves (1158 to 9157 angstroms) combine simultaneous HST , Swift , and ground-based observations over a 180 day period from 2014 January to July. Light-curve variability is interpreted as the reverberation response of the accretion disk to irradiation by a central time-varying point source. Our model yields the disk inclination, i, temperature T1 at 1 light day from the black hole, and a temperature-radius slope, alpha. We also infer the driving light curve and find that it correlates poorly with both the hard and soft X-ray light curves, suggesting that the X-rays alone may not drive the ultraviolet and optical variability over the observing period. We also decompose the light curves into bright, faint, and mean accretion-disk spectra. These spectra lie below that expected for a standard blackbody accretion disk accreting ...

  14. Mapping cortical haemodynamics during neonatal seizures using diffuse optical tomography: A case study

    Directory of Open Access Journals (Sweden)

    Harsimrat Singh

    2014-01-01

    Full Text Available Seizures in the newborn brain represent a major challenge to neonatal medicine. Neonatal seizures are poorly classified, under-diagnosed, difficult to treat and are associated with poor neurodevelopmental outcome. Video-EEG is the current gold-standard approach for seizure detection and monitoring. Interpreting neonatal EEG requires expertise and the impact of seizures on the developing brain remains poorly understood. In this case study we present the first ever images of the haemodynamic impact of seizures on the human infant brain, obtained using simultaneous diffuse optical tomography (DOT and video-EEG with whole-scalp coverage. Seven discrete periods of ictal electrographic activity were observed during a 60 minute recording of an infant with hypoxic–ischaemic encephalopathy. The resulting DOT images show a remarkably consistent, high-amplitude, biphasic pattern of changes in cortical blood volume and oxygenation in response to each electrographic event. While there is spatial variation across the cortex, the dominant haemodynamic response to seizure activity consists of an initial increase in cortical blood volume prior to a large and extended decrease typically lasting several minutes. This case study demonstrates the wealth of physiologically and clinically relevant information that DOT–EEG techniques can yield. The consistency and scale of the haemodynamic responses observed here also suggest that DOT–EEG has the potential to provide improved detection of neonatal seizures.

  15. High Resolution Aerosol Optical Depth Mapping of Beijing Using LANSAT8 Imagery

    Science.gov (United States)

    Li, Yan; Liu, Yuanliang; Wu, Jianliang

    2016-06-01

    Aerosol Optical Depth (AOD) is one of the most important parameters in the atmospheric correction of remote sensing images. We present a new method of per pixel AOD retrieval using the imagery of Landsat8. It is based on Second Simulation of the Satellite Signal in the Solar Spectrum (6S). General dark target method takes dense vegetation pixels as dark targets and derives their 550nm AODs directly from the LUT, and interpolates the AODs of other pixels according to spatial neighbourhood using those of dark target pixels. This method will down estimate the AOD levels for urban areas. We propose an innovative method to retrieval the AODs using multiple temporal data. For a pixel which has nothing change between the associated time, there must exists an intersection of surface albedo. When there are enough data to find the intersection it ought to be a value that meet the error tolerance. In this paper, we present an example of using three temporal Landsat ETM+ image to retrieve AOD taking Beijing as the testing area. The result is compared to the commonly employed dark target algorithm to show the effectiveness of the methods.

  16. Mapping forested wetlands in the Great Zhan River Basin through integrating optical, radar, and topographical data classification techniques.

    Science.gov (United States)

    Na, X D; Zang, S Y; Wu, C S; Li, W L

    2015-11-01

    Knowledge of the spatial extent of forested wetlands is essential to many studies including wetland functioning assessment, greenhouse gas flux estimation, and wildlife suitable habitat identification. For discriminating forested wetlands from their adjacent land cover types, researchers have resorted to image analysis techniques applied to numerous remotely sensed data. While with some success, there is still no consensus on the optimal approaches for mapping forested wetlands. To address this problem, we examined two machine learning approaches, random forest (RF) and K-nearest neighbor (KNN) algorithms, and applied these two approaches to the framework of pixel-based and object-based classifications. The RF and KNN algorithms were constructed using predictors derived from Landsat 8 imagery, Radarsat-2 advanced synthetic aperture radar (SAR), and topographical indices. The results show that the objected-based classifications performed better than per-pixel classifications using the same algorithm (RF) in terms of overall accuracy and the difference of their kappa coefficients are statistically significant (pclassifications using the RF algorithm. As for the object-based image analysis, there were also statistically significant differences (palgorithms. The object-based classification using RF provided a more visually adequate distribution of interested land cover types, while the object classifications based on the KNN algorithm showed noticeably commissions for forested wetlands and omissions for agriculture land. This research proves that the object-based classification with RF using optical, radar, and topographical data improved the mapping accuracy of land covers and provided a feasible approach to discriminate the forested wetlands from the other land cover types in forestry area.

  17. Clinical Significance of Optic Disc Progression by Topographic Change Analysis Maps in Glaucoma: An 8-Year Follow-Up Study

    Directory of Open Access Journals (Sweden)

    D. Kourkoutas

    2014-01-01

    Full Text Available Aim. To investigate the ability of Heidelberg Retina Tomograph (HRT3 Topographic Change Analysis (TCA map to predict the subsequent development of clinical change, in patients with glaucoma. Materials. 61 eyes of 61 patients, which, from a retrospective review were defined as stable on optic nerve head (ONH stereophotographs and visual field (VF, were enrolled in a prospective study. Eyes were classified as TCA-stable or TCA-progressed based on the TCA map. All patients underwent HRT3, VF, and ONH stereophotography at 9–12 months intervals. Clinical glaucoma progression was determined by masked assessment of ONH stereophotographs and VF Guided Progression Analysis. Results. The median (IQR total HRT follow-up period was 8.1 (7.3, 9.1 years, which included a median retrospective and prospective follow-up time of 3.9 (3.1, 5.0 and 4.0 (3.5, 4.7 years, respectively. In the TCA-stable eyes, VF and/or photographic progression occurred in 5/13 (38.4% eyes compared to 11/48 (22.9% of the TCA-progressed eyes. There was no statistically significant association between TCA progression and clinically relevant (photographic and/or VF progression (hazard ratio, 1.18; P=0.762. The observed median time to clinical progression from enrollment was significantly shorter in the TCA-progressed group compared to the TCA-stable group (P=0.04. Conclusion. Our results indicate that the commercially available TCA progression criteria do not adequately predict subsequent photographic and/or VF progression.

  18. Cardiac Sarcoidosis.

    Science.gov (United States)

    Birnie, David; Ha, Andrew C T; Gula, Lorne J; Chakrabarti, Santabhanu; Beanlands, Rob S B; Nery, Pablo

    2015-12-01

    Studies suggest clinically manifest cardiac involvement occurs in 5% of patients with pulmonary/systemic sarcoidosis. The principal manifestations of cardiac sarcoidosis (CS) are conduction abnormalities, ventricular arrhythmias, and heart failure. Data indicate that an 20% to 25% of patients with pulmonary/systemic sarcoidosis have asymptomatic (clinically silent) cardiac involvement. An international guideline for the diagnosis and management of CS recommends that patients be screened for cardiac involvement. Most studies suggest a benign prognosis for patients with clinically silent CS. Immunosuppression therapy is advocated for clinically manifest CS. Device therapy, with implantable cardioverter defibrillators, is recommended for some patients.

  19. Force mapping during the formation and maturation of cell adhesion sites with multiple optical tweezers.

    Science.gov (United States)

    Schwingel, Melanie; Bastmeyer, Martin

    2013-01-01

    Focal contacts act as mechanosensors allowing cells to respond to their biomechanical environment. Force transmission through newly formed contact sites is a highly dynamic process requiring a stable link between the intracellular cytoskeleton and the extracellular environment. To simultaneously investigate cellular traction forces in several individual maturing adhesion sites within the same cell, we established a custom-built multiple trap optical tweezers setup. Beads functionalized with fibronectin or RGD-peptides were placed onto the apical surface of a cell and trapped with a maximum force of 160 pN. Cells form adhesion contacts around the beads as demonstrated by vinculin accumulation and start to apply traction forces after 30 seconds. Force transmission was found to strongly depend on bead size, surface density of integrin ligands and bead location on the cell surface. Highest traction forces were measured for beads positioned on the leading edge. For mouse embryonic fibroblasts, traction forces acting on single beads are in the range of 80 pN after 5 minutes. If two beads were positioned parallel to the leading edge and with a center-to-center distance less than 10 µm, traction forces acting on single beads were reduced by 40%. This indicates a spatial and temporal coordination of force development in closely related adhesion sites. We also used our setup to compare traction forces, retrograde transport velocities, and migration velocities between two cell lines (mouse melanoma and fibroblasts) and primary chick fibroblasts. We find that maximal force development differs considerably between the three cell types with the primary cells being the strongest. In addition, we observe a linear relation between force and retrograde transport velocity: a high retrograde transport velocity is associated with strong cellular traction forces. In contrast, migration velocity is inversely related to traction forces and retrograde transport velocity.

  20. Force Mapping during the Formation and Maturation of Cell Adhesion Sites with Multiple Optical Tweezers

    Science.gov (United States)

    Schwingel, Melanie; Bastmeyer, Martin

    2013-01-01

    Focal contacts act as mechanosensors allowing cells to respond to their biomechanical environment. Force transmission through newly formed contact sites is a highly dynamic process requiring a stable link between the intracellular cytoskeleton and the extracellular environment. To simultaneously investigate cellular traction forces in several individual maturing adhesion sites within the same cell, we established a custom-built multiple trap optical tweezers setup. Beads functionalized with fibronectin or RGD-peptides were placed onto the apical surface of a cell and trapped with a maximum force of 160 pN. Cells form adhesion contacts around the beads as demonstrated by vinculin accumulation and start to apply traction forces after 30 seconds. Force transmission was found to strongly depend on bead size, surface density of integrin ligands and bead location on the cell surface. Highest traction forces were measured for beads positioned on the leading edge. For mouse embryonic fibroblasts, traction forces acting on single beads are in the range of 80 pN after 5 minutes. If two beads were positioned parallel to the leading edge and with a center-to-center distance less than 10 µm, traction forces acting on single beads were reduced by 40%. This indicates a spatial and temporal coordination of force development in closely related adhesion sites. We also used our setup to compare traction forces, retrograde transport velocities, and migration velocities between two cell lines (mouse melanoma and fibroblasts) and primary chick fibroblasts. We find that maximal force development differs considerably between the three cell types with the primary cells being the strongest. In addition, we observe a linear relation between force and retrograde transport velocity: a high retrograde transport velocity is associated with strong cellular traction forces. In contrast, migration velocity is inversely related to traction forces and retrograde transport velocity. PMID:23372781

  1. Force mapping during the formation and maturation of cell adhesion sites with multiple optical tweezers.

    Directory of Open Access Journals (Sweden)

    Melanie Schwingel

    Full Text Available Focal contacts act as mechanosensors allowing cells to respond to their biomechanical environment. Force transmission through newly formed contact sites is a highly dynamic process requiring a stable link between the intracellular cytoskeleton and the extracellular environment. To simultaneously investigate cellular traction forces in several individual maturing adhesion sites within the same cell, we established a custom-built multiple trap optical tweezers setup. Beads functionalized with fibronectin or RGD-peptides were placed onto the apical surface of a cell and trapped with a maximum force of 160 pN. Cells form adhesion contacts around the beads as demonstrated by vinculin accumulation and start to apply traction forces after 30 seconds. Force transmission was found to strongly depend on bead size, surface density of integrin ligands and bead location on the cell surface. Highest traction forces were measured for beads positioned on the leading edge. For mouse embryonic fibroblasts, traction forces acting on single beads are in the range of 80 pN after 5 minutes. If two beads were positioned parallel to the leading edge and with a center-to-center distance less than 10 µm, traction forces acting on single beads were reduced by 40%. This indicates a spatial and temporal coordination of force development in closely related adhesion sites. We also used our setup to compare traction forces, retrograde transport velocities, and migration velocities between two cell lines (mouse melanoma and fibroblasts and primary chick fibroblasts. We find that maximal force development differs considerably between the three cell types with the primary cells being the strongest. In addition, we observe a linear relation between force and retrograde transport velocity: a high retrograde transport velocity is associated with strong cellular traction forces. In contrast, migration velocity is inversely related to traction forces and retrograde transport velocity.

  2. Competitive binding-based optical DNA mapping for fast identification of bacteria--multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

    Science.gov (United States)

    Nilsson, Adam N; Emilsson, Gustav; Nyberg, Lena K; Noble, Charleston; Stadler, Liselott Svensson; Fritzsche, Joachim; Moore, Edward R B; Tegenfeldt, Jonas O; Ambjörnsson, Tobias; Westerlund, Fredrik

    2014-09-01

    We demonstrate a single DNA molecule optical mapping assay able to resolve a specific Escherichia coli strain from other strains. The assay is based on competitive binding of the fluorescent dye YOYO-1 and the AT-specific antibiotic netropsin. The optical map is visualized by stretching the DNA molecules in nanofluidic channels. We optimize the experimental conditions to obtain reproducible barcodes containing as much information as possible. We implement a multi-ligand transfer matrix method for calculating theoretical barcodes from known DNA sequences. Our method extends previous theoretical approaches for competitive binding of two types of ligands to many types of ligands and introduces a recursive approach that allows long barcodes to be calculated with standard computer floating point formats. The identification of a specific E. coli strain (CCUG 10979) is based on mapping of 50-160 kilobasepair experimental DNA fragments onto the theoretical genome using the developed theory. Our identification protocol introduces two theoretical constructs: a P-value for a best experiment-theory match and an information score threshold. The developed methods provide a novel optical mapping toolbox for identification of bacterial species and strains. The protocol does not require cultivation of bacteria or DNA amplification, which allows for ultra-fast identification of bacterial pathogens.

  3. Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli

    Science.gov (United States)

    Nilsson, Adam N.; Emilsson, Gustav; Nyberg, Lena K.; Noble, Charleston; Stadler, Liselott Svensson; Fritzsche, Joachim; Moore, Edward R. B.; Tegenfeldt, Jonas O.; Ambjörnsson, Tobias; Westerlund, Fredrik

    2014-01-01

    We demonstrate a single DNA molecule optical mapping assay able to resolve a specific Escherichia coli strain from other strains. The assay is based on competitive binding of the fluorescent dye YOYO-1 and the AT-specific antibiotic netropsin. The optical map is visualized by stretching the DNA molecules in nanofluidic channels. We optimize the experimental conditions to obtain reproducible barcodes containing as much information as possible. We implement a multi-ligand transfer matrix method for calculating theoretical barcodes from known DNA sequences. Our method extends previous theoretical approaches for competitive binding of two types of ligands to many types of ligands and introduces a recursive approach that allows long barcodes to be calculated with standard computer floating point formats. The identification of a specific E. coli strain (CCUG 10979) is based on mapping of 50–160 kilobasepair experimental DNA fragments onto the theoretical genome using the developed theory. Our identification protocol introduces two theoretical constructs: a P-value for a best experiment-theory match and an information score threshold. The developed methods provide a novel optical mapping toolbox for identification of bacterial species and strains. The protocol does not require cultivation of bacteria or DNA amplification, which allows for ultra-fast identification of bacterial pathogens. PMID:25013180

  4. Optics

    CERN Document Server

    Fincham, W H A

    2013-01-01

    Optics: Eighth Edition covers the work necessary for the specialization in such subjects as ophthalmic optics, optical instruments and lens design. The text includes topics such as the propagation and behavior of light; reflection and refraction - their laws and how different media affect them; lenses - thick and thin, cylindrical and subcylindrical; photometry; dispersion and color; interference; and polarization. Also included are topics such as diffraction and holography; the limitation of beams in optical systems and its effects; and lens systems. The book is recommended for engineering st

  5. A Review of the Application of Optical and Radar Remote Sensing Data Fusion to Land Use Mapping and Monitoring

    Directory of Open Access Journals (Sweden)

    Neha Joshi

    2016-01-01

    Full Text Available The wealth of complementary data available from remote sensing missions can hugely aid efforts towards accurately determining land use and quantifying subtle changes in land use management or intensity. This study reviewed 112 studies on fusing optical and radar data, which offer unique spectral and structural information, for land cover and use assessments. Contrary to our expectations, only 50 studies specifically addressed land use, and five assessed land use changes, while the majority addressed land cover. The advantages of fusion for land use analysis were assessed in 32 studies, and a large majority (28 studies concluded that fusion improved results compared to using single data sources. Study sites were small, frequently 300–3000 km 2 or individual plots, with a lack of comparison of results and accuracies across sites. Although a variety of fusion techniques were used, pre-classification fusion followed by pixel-level inputs in traditional classification algorithms (e.g., Gaussian maximum likelihood classification was common, but often without a concrete rationale on the applicability of the method to the land use theme being studied. Progress in this field of research requires the development of robust techniques of fusion to map the intricacies of land uses and changes therein and systematic procedures to assess the benefits of fusion over larger spatial scales.

  6. Enterobacter asburiae Strain L1: Complete Genome and Whole Genome Optical Mapping Analysis of a Quorum Sensing Bacterium

    Directory of Open Access Journals (Sweden)

    Yin Yin Lau

    2014-07-01

    Full Text Available Enterobacter asburiae L1 is a quorum sensing bacterium isolated from lettuce leaves. In this study, for the first time, the complete genome of E. asburiae L1 was sequenced using the single molecule real time sequencer (PacBio RSII and the whole genome sequence was verified by using optical genome mapping (OpGen technology. In our previous study, E. asburiae L1 has been reported to produce AHLs, suggesting the possibility of virulence factor regulation which is quorum sensing dependent. This evoked our interest to study the genome of this bacterium and here we present the complete genome of E. asburiae L1, which carries the virulence factor gene virK, the N-acyl homoserine lactone-based QS transcriptional regulator gene luxR and the N-acyl homoserine lactone synthase gene which we firstly named easI. The availability of the whole genome sequence of E. asburiae L1 will pave the way for the study of the QS-mediated gene expression in this bacterium. Hence, the importance and functions of these signaling molecules can be further studied in the hope of elucidating the mechanisms of QS-regulation in E. asburiae. To the best of our knowledge, this is the first documentation of both a complete genome sequence and the establishment of the molecular basis of QS properties of E. asburiae.

  7. Prebiotic Low Sugar Chocolate Dairy Desserts: Physical and Optical Characteristics and Performance of PARAFAC and PCA Preference Map.

    Science.gov (United States)

    Morais, E C; Esmerino, E A; Monteiro, R A; Pinheiro, C M; Nunes, C A; Cruz, A G; Bolini, Helena M A

    2016-01-01

    The addition of prebiotic and sweeteners in chocolate dairy desserts opens up new opportunities to develop dairy desserts that besides having a lower calorie intake still has functional properties. In this study, prebiotic low sugar dairy desserts were evaluated by 120 consumers using a 9-point hedonic scale, in relation to the attributes of appearance, aroma, flavor, texture, and overall liking. Internal preference map using parallel factor analysis (PARAFAC) and principal component analysis (PCA) was performed using the consumer data. In addition, physical (texture profile) and optical (instrumental color) analyses were also performed. Prebiotic dairy desserts containing sucrose and sucralose were equally liked by the consumers. These samples were characterized by firmness and gumminess, which can be considered drivers of liking by the consumers. Optimization of the prebiotic low sugar dessert formulation should take in account the choice of ingredients that contribute in a positive manner for these parameters. PARAFAC allowed the extraction of more relevant information in relation to PCA, demonstrating that consumer acceptance analysis can be evaluated by simultaneously considering several attributes. Multiple factor analysis reported Rv value of 0.964, suggesting excellent concordance for both methods.

  8. Cardiac Malpositions

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, Shi Joon; Im, Chung Gie; Yeon, Kyung Mo; Hasn, Man Chung [Seoul National University College of Medicine, Seoul (Korea, Republic of)

    1979-06-15

    Cardiac Malposition refers to any position of the heart other than a left-sided heart in a situs solitus individual. Associated cardiac malformations are so complex that even angiocardiographic and autopsy studies may not afford an accurate information. Although the terms and classifications used to describe the internal cardiac anatomy and their arterial connections in cardiac malpositions differ and tend to be confusing, common agreement exists on the need for a segmental approach to diagnosis. Authors present 18 cases of cardiac malpositions in which cardiac catheterization and angiocardiography were done at the Department of Radiology, Seoul National University Hospital between 1971 and 1979. Authors analyzed the clinical, radiographic, operative and autopsy findings with the emphasis on the angiocardiographic findings. The results are as follows: 1. Among 18 cases with cardiac malpositions, 6 cases had dextrocardia with situs inversus, 9 cases had dextrocardia with situs solitus and 3 cases had levocardia with situs inversus. 2. There was no genuine exception to visceroatrial concordance rule. 3. Associated cardiac malpositions were variable and complex with a tendency of high association of transposition and double outlet varieties with dextrocardia in situs solitus and levocardia in situs inversus. Only one in 6 cases of dextrocardia with situs inversus had pure transposition. 4. In two cases associated pulmonary atresia was found at surgery which was not predicted by angiocardiography. 5. Because many of the associated complex lesions can be corrected surgically provided the diagnosis is accurate, the selective biplane angiocardiography with or without cineradiography is essential.

  9. Single-lens Fourier-transform-based optical color image encryption using dual two-dimensional chaotic maps and the Fresnel transform.

    Science.gov (United States)

    Su, Yonggang; Tang, Chen; Li, Biyuan; Chen, Xia; Xu, Wenjun; Cai, Yuanxue

    2017-01-20

    We propose an optical color image encryption system based on the single-lens Fourier transform, the Fresnel transform, and the chaotic random phase masks (CRPMs). The proposed encryption system contains only one optical lens, which makes it more efficient and concise to implement. The introduction of the Fresnel transform makes the first phase mask of the proposed system also act as the main secret key when the input image is a non-negative amplitude-only map. The two CRPMs generated by dual two-dimensional chaotic maps can provide more security to the proposed system. In the proposed system, the key management is more convenient and the transmission volume is reduced greatly. In addition, the secret keys can be updated conveniently in each encryption process to invalidate the chosen plaintext attack and the known plaintext attack. Numerical simulation results have demonstrated the feasibility and security of the proposed encryption system.

  10. Association between diffuse myocardial fibrosis by cardiac magnetic resonance contrast-enhanced T(1) mapping and subclinical myocardial dysfunction in diabetic patients: a pilot study.

    NARCIS (Netherlands)

    Ng, A.C.; Auger, D.; Delgado, V.; Elderen, S.G. van; Bertini, M.; Siebelink, H.M.; Geest, R.J. van der; Bonetti, C.; Velde, E.T. van der; Roos, A. de; Smit, J.W.A.; Leung, D.Y.; Bax, J.J.; Lamb, H.J.

    2012-01-01

    BACKGROUND: Diabetic patients have increased interstitial myocardial fibrosis on histological examination. Magnetic resonance imaging (MRI) T(1) mapping is a previously validated imaging technique that can quantify the burden of global and regional interstitial fibrosis. However, the association bet

  11. Statistical parametric mapping of stimuli-evoked changes in quantitative blood flow using extended-focus optical coherence microscopy (Conference Presentation)

    Science.gov (United States)

    Marchand, Paul J.; Bouwens, Arno; Shamaei, Vincent; Nguyen, David; Extermann, Jerome; Bolmont, Tristan; Lasser, Theo

    2016-03-01

    Magnetic Resonance Imaging has revolutionised our understanding of brain function through its ability to image human cerebral structures non-invasively over the entire brain. By exploiting the different magnetic properties of oxygenated and deoxygenated blood, functional MRI can indirectly map areas undergoing neural activation. Alongside the development of fMRI, powerful statistical tools have been developed in an effort to shed light on the neural pathways involved in processing of sensory and cognitive information. In spite of the major improvements made in fMRI technology, the obtained spatial resolution of hundreds of microns prevents MRI in resolving and monitoring processes occurring at the cellular level. In this regard, Optical Coherence Microscopy is an ideal instrumentation as it can image at high spatio-temporal resolution. Moreover, by measuring the mean and the width of the Doppler spectra of light scattered by moving particles, OCM allows extracting the axial and lateral velocity components of red blood cells. The ability to assess quantitatively total blood velocity, as opposed to classical axial velocity Doppler OCM, is of paramount importance in brain imaging as a large proportion of cortical vascular is oriented perpendicularly to the optical axis. We combine here quantitative blood flow imaging with extended-focus Optical Coherence Microscopy and Statistical Parametric Mapping tools to generate maps of stimuli-evoked cortical hemodynamics at the capillary level.

  12. Optical measurements and mapping in Ga- and Al-doped ZnO and Sn-doped In{sub 2}O{sub 3}

    Energy Technology Data Exchange (ETDEWEB)

    Look, D.C. [Semiconductor Research Center, Wright State University, Dayton, OH, 45435 (United States); Wyle Laboratories, Inc., 2601 Mission Point Boulevard, Suite 300, Dayton, OH, 45431 (United States); Air Force Research Laboratory Sensors Directorate, Wright-Patterson Air Force Base, OH, 45433 (United States); Leedy, K.D. [Air Force Research Laboratory Sensors Directorate, Wright-Patterson Air Force Base, OH, 45433 (United States)

    2015-07-15

    Hall-effect/conductivity measurements in TCO materials such as Ga-doped ZnO (GZO), Al-doped ZnO (AZO), and Sn-doped In{sub 2}O{sub 3} (ITO) determine Hall mobility μ{sub H} and sheet carrier concentration n{sub s} directly by measurements of current, voltage, and magnetic field. If thickness d is known, then n{sub s} can be converted into volume concentration n = n{sub s}/d. Optical measurements, on the other hand, determine analogous quantities μ{sub opt} and n{sub opt} indirectly, usually by invoking the Drude model of the dielectric constant. Here we compare μ{sub opt} and n{sub opt} obtained by Drude analysis of reflection, transmission, and spectroscopic-ellipsometry (SE) measurements, with μ{sub H} and n. Although reasonably good agreement between Hall effect and optical parameters can be obtained with all of these techniques, SE is especially attractive for non-destructive, high-density mapping of μ and n. Moreover, we can use degenerate scattering theory to convert maps of μ and n into maps of donor and acceptor concentration. This new mapping methodology is applied to GZO and ITO. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  13. Influence of mannan-binding lectin and MAp44 on outcome in comatose survivors of out-of-hospital cardiac arrest

    DEFF Research Database (Denmark)

    Bro-Jeppesen, John; Kjaergaard, Jesper; Thiel, Steffen

    2016-01-01

    randomized Target Temperature Management (TTM) trial, we measured MBL and MAp44 levels at baseline, 24, 48 and 72 h after OHCA in 169 consecutive patients randomly assigned to TTM at 33 °C or 36 °C for 24h. Primary outcome was 30 days mortality and secondary outcome was favorable neurological outcome...... MAp44 levels were not associated with mortality, p=0.25. There was no significant difference in neurological outcome between the two MBL groups assessed by CPC (p=0.69) and mRS (p=0.91). In multivariable models, baseline MBL (OR=1.0, p=0.70), (OR=1.5, p=0.30) and MAp44 levels (OR=1.0, p=0.99), (OR=1...

  14. Cardiac MRI. T2-mapping versus T2-weighted dark-blood TSE imaging for myocardial edema visualization in acute myocardial infarction

    Energy Technology Data Exchange (ETDEWEB)

    Nassenstein, K.; Nensa, F.; Schlosser, T.; Umutlu, L.; Lauenstein, T. [University Hospital Essen (Germany). Dept. of Diagnostic and Interventional Radiology and Neuroradiology; Bruder, O. [Elisabeth Hospital, Essen (Germany). Dept. of Cardiology and Angiology; Maderwald, S.; Ladd, M.E. [Duisburg-Essen Univ., Essen (Germany). Erwin L. Hahn Institute for Magnetic Resonance Imaging

    2014-02-15

    Purpose: To assess the diagnostic accuracy of T2 mapping for the detection of myocardial edema in acute myocardial infarction (AMI), and to compare this diagnostic accuracy with that of the current standard for myocardial edema imaging, which is T2w dark-blood TSE imaging. Materials and Methods: 29 patients with AMI were examined at 1.5 T. For the visualization of myocardial edema, T2 maps, calculated from three T2w SSFP images, and T2w dark-blood TSE images were acquired in standard short- and long-axis views. Cine SSFP images were acquired for the analysis of left ventricular (LV) function and late gadolinium enhancement images (LGE) for the visualization of myocardial necrosis. The T2 maps as well as the T2w dark-blood TSE images were evaluated twice independently from the cine SSFP and LGE images. The presence or absence of myocardial edema was rated visually for each LV segment. As the standard of reference, the infarct zone was defined based on the cine SSFP and the LGE images. Results: In this segment-based analysis, T2 mapping showed a sensitivity of 82 % and a specificity of 94 % for the detection of edema in the infarct zone. T2w dark-blood TSE imaging revealed a sensitivity of 50 % and a specificity of 98 %. T2 mapping showed a higher intra-rater agreement compared to T2w dark-blood TSE imaging ({kappa}: 0.87 vs. 0.76). Conclusions: T2 mapping allows for the visualization of myocardial edema in AMI with a high sensitivity and specificity, and features better diagnostic accuracy in terms of a higher sensitivity compared to T2w dark-blood TSE imaging. (orig.)

  15. Cardiac cameras.

    Science.gov (United States)

    Travin, Mark I

    2011-05-01

    Cardiac imaging with radiotracers plays an important role in patient evaluation, and the development of suitable imaging instruments has been crucial. While initially performed with the rectilinear scanner that slowly transmitted, in a row-by-row fashion, cardiac count distributions onto various printing media, the Anger scintillation camera allowed electronic determination of tracer energies and of the distribution of radioactive counts in 2D space. Increased sophistication of cardiac cameras and development of powerful computers to analyze, display, and quantify data has been essential to making radionuclide cardiac imaging a key component of the cardiac work-up. Newer processing algorithms and solid state cameras, fundamentally different from the Anger camera, show promise to provide higher counting efficiency and resolution, leading to better image quality, more patient comfort and potentially lower radiation exposure. While the focus has been on myocardial perfusion imaging with single-photon emission computed tomography, increased use of positron emission tomography is broadening the field to include molecular imaging of the myocardium and of the coronary vasculature. Further advances may require integrating cardiac nuclear cameras with other imaging devices, ie, hybrid imaging cameras. The goal is to image the heart and its physiological processes as accurately as possible, to prevent and cure disease processes.

  16. Improving wetland mapping techniques

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Mapping wetland extent, structure and invasives using radar imagery. Acquiring optical, thermal, LIDAR, and RADAR images and analysis for improved wetland mapping,...

  17. Alteration of cardiac ACE2/Mas expression and cardiac remodelling in rats with aortic constriction.

    Science.gov (United States)

    Zhang, Yanling; Li, Bing; Wang, Bingxiangi; Zhang, Jingjun; Wu, Junyan; Morgan, Trefor

    2014-12-31

    The recent discovery of the new components of the renin-angiotensin system (RAS) suggests the importance of the maintenance of cardiovascular structure and functions. To assess the role of the angiotensin-converting enzyme 2 (ACE2)-Mas receptor axis in the regulation of cardiac structure and function, the present work investigated the expression of ACE2 and Mas receptor in the heart in the cardiac remodeling that occurs in aortic constricted rats. Partial abdominal aortic ligation was carried out in Sprague-Dawley rats. Angiotensin AT1 receptor blockade and ACE inhibition were achieved by losartan and enalapril treatment, respectively. Results showed that aortic constriction increased left ventricular hypertrophy, fibrosis, mean arterial pressure (MAP), plasma renin activity (PRA) and cardiac ACE levels, but decreased the expression of cardiac ACE2 and Mas receptor. Losartan treatment significantly decreased MAP, left ventricle hypertrophy (LVH), fibrosis, and increased cardiac ACE2 and Mas expression. Enalapril also improved the cardiac parameters with a rise in cardiac ACE2, but did not change the Mas level. In conclusion, aortic constriction results in cardiac hypertrophy, fibrosis and a rise of cardiac ACE expression. Both AT1 receptor blocker and ACE inhibitor play a cardioprotective role in aortic constriction. However, AT1 receptor blocker particularly promotes cardiac ACE2 and Mas receptor levels. ACE inhibitor is associated with the inhibition of ACE and normalization of cardiac ACE2 activity.

  18. Superior spatial resolution in confocal X-ray techniques using collimating channel array optics: elemental mapping and speciation in archaeological human bone

    Energy Technology Data Exchange (ETDEWEB)

    Choudhury, S.; Agyeman-Budu, D. N.; Woll, A. R.; Swanston, T.; Varney, T. L.; Cooper, D. M. L.; Hallin, E.; George, G. N.; Pickering, I. J.; Coulthard, I.

    2017-01-01

    Confocal X-ray fluorescence imaging (CXFI) and confocal X-ray absorption spectroscopy (CXAS) respectively enable the study of three dimensionally resolved localization and speciation of elements. Applied to a thick sample, essentially any volume element of interest within the X-ray fluorescence escape depth can be examined without the need for physical thin sectioning. To date, X-ray confocal detection generally has employed a polycapillary optic in front of the detector to collect fluorescence from the probe volume formed at the intersection of its focus with the incident microfocus beam. This work demonstrates the capability of a novel Collimating Channel Array (CCA) optic in providing an improved and essentially energy independent depth resolution approaching 2 μm. By presenting a comparison of elemental maps of archaeological bone collected without confocal detection, and with polycapillary- and CCA-based confocal detection, this study highlights the strengths and limitations of each mode. Unlike the polycapillary, the CCA shows similar spatial resolution in maps for both low (Ca) and high (Pb and Sr) energy X-ray fluorescence, thus illustrating the energy independent nature of the CCA optic resolution. While superior spatial resolution is demonstrated for all of these elements, the most significant improvement is observed for Ca, demonstrating the advantage of employing the CCA optic in examining light elements. In addition to CXFI, this configuration also enables the collection of Pb L3 CXAS data from micro-volumes with dimensions comparable to bone microstructures of interest. Our CXAS result, which represents the first CCA-based biological CXAS, demonstrates the ability of CCA optics to collect site specific spectroscopic information. The demonstrated combination of site-specific elemental localization and speciation data will be useful in diverse fields.

  19. Integration of Optical and Synthetic Aperture Radar Imagery for Improving Crop Mapping in Northwestern Benin, West Africa

    Directory of Open Access Journals (Sweden)

    Gerald Forkuor

    2014-07-01

    Full Text Available Crop mapping in West Africa is challenging, due to the unavailability of adequate satellite images (as a result of excessive cloud cover, small agricultural fields and a heterogeneous landscape. To address this challenge, we integrated high spatial resolution multi-temporal optical (RapidEye and dual polarized (VV/VH SAR (TerraSAR-X data to map crops and crop groups in northwestern Benin using the random forest classification algorithm. The overall goal was to ascertain the contribution of the SAR data to crop mapping in the region. A per-pixel classification result was overlaid with vector field boundaries derived from image segmentation, and a crop type was determined for each field based on the modal class within the field. A per-field accuracy assessment was conducted by comparing the final classification result with reference data derived from a field campaign. Results indicate that the integration of RapidEye and TerraSAR-X data improved classification accuracy by 10%–15% over the use of RapidEye only. The VV polarization was found to better discriminate crop types than the VH polarization. The research has shown that if optical and SAR data are available for the whole cropping season, classification accuracies of up to 75% are achievable.

  20. Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping

    Science.gov (United States)

    Müller, Vilhelm; Rajer, Fredrika; Frykholm, Karolin; Nyberg, Lena K.; Quaderi, Saair; Fritzsche, Joachim; Kristiansson, Erik; Ambjörnsson, Tobias; Sandegren, Linus; Westerlund, Fredrik

    2016-12-01

    Bacterial plasmids are extensively involved in the rapid global spread of antibiotic resistance. We here present an assay, based on optical DNA mapping of single plasmids in nanofluidic channels, which provides detailed information about the plasmids present in a bacterial isolate. In a single experiment, we obtain the number of different plasmids in the sample, the size of each plasmid, an optical barcode that can be used to identify and trace the plasmid of interest and information about which plasmid that carries a specific resistance gene. Gene identification is done using CRISPR/Cas9 loaded with a guide-RNA (gRNA) complementary to the gene of interest that linearizes the circular plasmids at a specific location that is identified using the optical DNA maps. We demonstrate the principle on clinically relevant extended spectrum beta-lactamase (ESBL) producing isolates. We discuss how the gRNA sequence can be varied to obtain the desired information. The gRNA can either be very specific to identify a homogeneous group of genes or general to detect several groups of genes at the same time. Finally, we demonstrate an example where we use a combination of two gRNA sequences to identify carbapenemase-encoding genes in two previously not characterized clinical bacterial samples.

  1. Cardiac echinococcosis

    Directory of Open Access Journals (Sweden)

    Ivanović-Krstić Branislava A.

    2002-01-01

    Full Text Available Cardiac hydatid disease is rare. We report on an uncommon hydatid cyst localized in the right ventricular wall, right atrial wall tricuspid valve left atrium and pericard. A 33-year-old woman was treated for cough, fever and chest pain. Cardiac echocardiograpic examination revealed a round tumor (5.8 x 4 cm in the right ventricular free wall and two smaller cysts behind that tumor. There were cysts in right atrial wall and tricuspidal valve as well. Serologic tests for hydatidosis were positive. Computed tomography finding was consistent with diagnosis of hydatid cyst in lungs and right hylar part. Surgical treatment was rejected due to great risk of cardiac perforation. Medical treatment with albendazole was unsuccessful and the patient died due to systemic hydatid involvement of the lungs, liver and central nervous system.

  2. Compilation and Validation of SAR and Optical Data Products for a Complete and Global Map of Inland/Ocean Water Tailored to the Climate Modeling Community

    Directory of Open Access Journals (Sweden)

    Céline Lamarche

    2017-01-01

    Full Text Available Accurate maps of surface water extent are of paramount importance for water management, satellite data processing and climate modeling. Several maps of water bodies based on remote sensing data have been released during the last decade. Nonetheless, none has a truly (90 ∘ N/90 ∘ S global coverage while being thoroughly validated. This paper describes a global, spatially-complete (void-free and accurate mask of inland/ocean water for the 2000–2012 period, built in the framework of the European Space Agency (ESA Climate Change Initiative (CCI. This map results from the synergistic combination of multiple individual SAR and optical water body and auxiliary datasets. A key aspect of this work is the original and rigorous stratified random sampling designed for the quality assessment of binary classifications where one class is marginally distributed. Input and consolidated products were assessed qualitatively and quantitatively against a reference validation database of 2110 samples spread throughout the globe. Using all samples, overall accuracy was always very high among all products, between 98 % and 100 % . The CCI global map of open water bodies provided the best water class representation (F-score of 89 % compared to its constitutive inputs. When focusing on the challenging areas for water bodies’ mapping, such as shorelines, lakes and river banks, all products yielded substantially lower accuracy figures with overall accuracies ranging between 74 % and 89 % . The inland water area of the CCI global map of open water bodies was estimated to be 3.17 million km 2 ± 0.24 million km 2 . The dataset is freely available through the ESA CCI Land Cover viewer.

  3. Planck 2016 intermediate results. XLVI. Reduction of large-scale systematic effects in HFI polarization maps and estimation of the reionization optical depth

    CERN Document Server

    Aghanim, N; Aumont, J; Baccigalupi, C; Ballardini, M; Banday, A J; Barreiro, R B; Bartolo, N; Basak, S; Battye, R; Benabed, K; Bernard, J -P; Bersanelli, M; Bielewicz, P; Bock, J J; Bonaldi, A; Bonavera, L; Bond, J R; Borrill, J; Bouchet, F R; Boulanger, F; Bucher, M; Burigana, C; Butler, R C; Calabrese, E; Cardoso, J -F; Carron, J; Challinor, A; Chiang, H C; Colombo, L P L; Combet, C; Comis, B; Coulais, A; Crill, B P; Curto, A; Cuttaia, F; Davis, R J; de Bernardis, P; de Rosa, A; de Zotti, G; Delabrouille, J; Delouis, J -M; Di Valentino, E; Dickinson, C; Diego, J M; Doré, O; Douspis, M; Ducout, A; Dupac, X; Efstathiou, G; Elsner, F; Enßlin, T A; Eriksen, H K; Falgarone, E; Fantaye, Y; Finelli, F; Forastieri, F; Frailis, M; Fraisse, A A; Franceschi, E; Frolov, A; Galeotta, S; Galli, S; Ganga, K; Génova-Santos, R T; Gerbino, M; Ghosh, T; González-Nuevo, J; Górski, K M; Gratton, S; Gruppuso, A; Gudmundsson, J E; Hansen, F K; Helou, G; Henrot-Versillé, S; Herranz, D; Hivon, E; Huang, Z; Ilic, S; Jaffe, A H; Jones, W C; Keihänen, E; Keskitalo, R; Kisner, T S; Knox, L; Krachmalnicoff, N; Kunz, M; Kurki-Suonio, H; Lagache, G; Lamarre, J -M; Langer, M; Lasenby, A; Lattanzi, M; Lawrence, C R; Jeune, M Le; Leahy, J P; Levrier, F; Liguori, M; Lilje, P B; López-Caniego, M; Ma, Y -Z; Macías-Pérez, J F; Maggio, G; Mangilli, A; Maris, M; Martin, P G; Martínez-González, E; Matarrese, S; Mauri, N; McEwen, J D; Meinhold, P R; Melchiorri, A; Mennella, A; Migliaccio, M; Miville-Deschênes, M -A; Molinari, D; Moneti, A; Montier, L; Morgante, G; Moss, A; Mottet, S; Naselsky, P; Natoli, P; Oxborrow, C A; Pagano, L; Paoletti, D; Partridge, B; Patanchon, G; Patrizii, L; Perdereau, O; Perotto, L; Pettorino, V; Piacentini, F; Plaszczynski, S; Polastri, L; Polenta, G; Puget, J -L; Rachen, J P; Racine, B; Reinecke, M; Remazeilles, M; Renzi, A; Rocha, G; Rossetti, M; Roudier, G; Rubiño-Martín, J A; Ruiz-Granados, B; Salvati, L; Sandri, M; Savelainen, M; Scott, D; Sirri, G; Sunyaev, R; Suur-Uski, A -S; Tauber, J A; Tenti, M; Toffolatti, L; Tomasi, M; Tristram, M; Trombetti, T; Valiviita, J; Van Tent, F; Vibert, L; Vielva, P; Villa, F; Vittorio, N; Wandelt, B D; Watson, R; Wehus, I K; White, M; Zacchei, A; Zonca, A

    2016-01-01

    This paper describes the identification, modelling, and removal of previously unexplained systematic effects in the polarization data of the Planck High Frequency Instrument (HFI) on large angular scales, including new mapmaking and calibration procedures, new and more complete end-to-end simulations, and a set of robust internal consistency checks on the resulting maps. These maps, at 100, 143, 217, and 353 GHz, are early versions of those that will be released in final form later in 2016. The improvements allow us to determine the cosmic reionization optical depth $\\tau$ using, for the first time, the low-multipole $EE$ data from HFI, reducing significantly the central value and uncertainty, and hence the upper limit. Two different likelihood procedures are used to constrain $\\tau$ from two estimators of the CMB $E$- and $B$-mode angular power spectra at 100 and 143 GHz, after debiasing the spectra from a small remaining systematic contamination. These all give fully consistent results. A further consistenc...

  4. Direct Push Optical Screening Tool for High Resolution, Real-Time Mapping of Chlorinated Solvent DNAPL Architecture

    Science.gov (United States)

    2016-07-01

    27 7.2 COST DRIVERS ...Hydrocarbon PID Photoionization Detector sec second TarGOST® Tar-specific Green Optical Screening Tool UVOST® Ultra Violet Optical Screening...volatile organic compounds (VOCs) in the soil adjacent to the membrane to volatilize and diffuse across the membrane and into a carrier gas. The carrier

  5. Adaptive plasticity of the auditory space map in the optic tectum of adult and baby barn owls in response to external ear modification.

    Science.gov (United States)

    Knudsen, E I; Esterly, S D; Olsen, J F

    1994-01-01

    1. This study demonstrates the influence of experience on the establishment and maintenance of the auditory map of space in the optic tectum of the barn owl. Auditory experience was altered either by preventing the structures of the external ears (the facial ruff and preaural flaps) from appearing in baby barn owls (baby ruff-cut owls) or by removing these structures in adults (adult ruff-cut owls). These structures shape the binaural cues used for localizing sounds in both the horizontal and vertical dimensions. 2. The acoustic effects of removing the external ear structures were measured using probe tube microphones placed in the ear canals. In both baby and adult ruff-cut owls, the spatial pattern of binaural localization cues was dramatically different from normal: interaural level difference (ILD) changed with azimuth instead of with elevation, the rate of change of ILD across space was decreased relative to normal, and the rate of change of interaural time difference (ITD) across frontal space was increased relative to normal. 3. The neurophysiological representations of ITD and ILD in the optic tectum were measured before and > or = 3 mo after ruff removal in adults and beginning at 4.5 months of age in baby ruff-cut owls. Multiunit tuning to ITD and to ILD was measured using dichotic stimulation in ketamine-anesthetized owls. The tectal maps of ITD and ILD were reconstructed using visual receptive field location as a marker for recording site location in the optic tectum. 4. Adjustment of the tectal map of ITD to the altered spatial pattern of acoustic ITD was essentially complete in adults as well as in baby ruff-cut owls. This adjustment changed the magnification of ITD across the tectum, with resultant changes in ITD tuning at individual tectal sites of up to approximately 25 microseconds (approximately 5% of the physiological range) relative to normal values. 5. Adaptation of the tectal ILD map to the ruff-cut spatial pattern of acoustic ILD was

  6. Cardiac Rehabilitation

    Science.gov (United States)

    ... your risk of future heart problems, and to improve your health and quality of life. Cardiac rehabilitation programs increase ... exercise routine at home or at a local gym. You may also continue to ... health concerns. Education about nutrition, lifestyle and weight loss ...

  7. Improving the extraction of crisis information in the context of flood, fire, and landslide rapid mapping using SAR and optical remote sensing data

    Science.gov (United States)

    Martinis, Sandro; Clandillon, Stephen; Twele, André; Huber, Claire; Plank, Simon; Maxant, Jérôme; Cao, Wenxi; Caspard, Mathilde; May, Stéphane

    2016-04-01

    Optical and radar satellite remote sensing have proven to provide essential crisis information in case of natural disasters, humanitarian relief activities and civil security issues in a growing number of cases through mechanisms such as the Copernicus Emergency Management Service (EMS) of the European Commission or the International Charter 'Space and Major Disasters'. The aforementioned programs and initiatives make use of satellite-based rapid mapping services aimed at delivering reliable and accurate crisis information after natural hazards. Although these services are increasingly operational, they need to be continuously updated and improved through research and development (R&D) activities. The principal objective of ASAPTERRA (Advancing SAR and Optical Methods for Rapid Mapping), the ESA-funded R&D project being described here, is to improve, automate and, hence, speed-up geo-information extraction procedures in the context of natural hazards response. This is performed through the development, implementation, testing and validation of novel image processing methods using optical and Synthetic Aperture Radar (SAR) data. The methods are mainly developed based on data of the German radar satellites TerraSAR-X and TanDEM-X, the French satellite missions Pléiades-1A/1B as well as the ESA missions Sentinel-1/2 with the aim to better characterize the potential and limitations of these sensors and their synergy. The resulting algorithms and techniques are evaluated in real case applications during rapid mapping activities. The project is focussed on three types of natural hazards: floods, landslides and fires. Within this presentation an overview of the main methodological developments in each topic is given and demonstrated in selected test areas. The following developments are presented in the context of flood mapping: a fully automated Sentinel-1 based processing chain for detecting open flood surfaces, a method for the improved detection of flooded vegetation

  8. High Spatial Resolution Electro -Optic Field -Mapping for Three Orthogonal Field Components in a Micro -Structured Electrode

    Institute of Scientific and Technical Information of China (English)

    Yoshiro Matsuo; Tetsuya Kawanishi; Satoshi Oikawa; Kaoru Higuma; Masayuki Izutsu

    2003-01-01

    @@ The optically based technique of electro-optic (EO)sampling has been used for diagnosing the internal high-speed signals of integrated circuits [1]. One of the features that make the EO sampling technique very promising is a minimal probe: the EO sampling technique does not require an electrode and ground plane incorporated as part of a probe so that, compared with conventional metal probes, the invasiveness of an EO probe is minimal.

  9. High Spatial Resolution Electro -Optic Field -Mapping for Three Orthogonal Field Components in a Micro -Structured Electrode

    Institute of Scientific and Technical Information of China (English)

    Yoshiro; Matsuo; Tetsuya; Kawanishi; Satoshi; Oikawa; Kaoru; Higuma; Masayuki; Izutsu

    2003-01-01

    The optically based technique of electro-optic (EO) sampling has been used for diagnosing the internal high-speed signals of integrated circuits.One of the features that make the EO sampling technique very promising is a minimal probe: the EO sampling technique does not require an electrode and ground plane incorporated as part of a probe so that, compared with conventional metal probes, the invasiveness of an EO probe is minimal.

  10. Evaluation of the influence of cardiac motion on the accuracy and reproducibility of longitudinal measurements and the corresponding image quality in optical frequency domain imaging: an ex vivo investigation of the optimal pullback speed.

    Science.gov (United States)

    Koyama, Kohei; Yoneyama, Kihei; Mitarai, Takanobu; Kuwata, Shingo; Kongoji, Ken; Harada, Tomoo; Akashi, Yoshihiro J

    2015-08-01

    Longitudinal measurement using intravascular ultrasound is limited because the motorized pullback device assumes no cardiac motion. A newly developed intracoronary imaging modality, optical frequency domain imaging (OFDI), has higher resolution and an increased auto-pullback speed with presumably lesser susceptibility to cardiac motion artifacts during pullback for longitudinal measurement; however, it has not been fully investigated. We aimed to clarify the influence of cardiac motion on the accuracy and reproducibility of longitudinal measurements obtained using OFDI and to determine the optimal pullback speed. This ex vivo study included 31 stents deployed in the mid left anterior descending artery under phantom heartbeat and coronary flow simulation. Longitudinal stent lengths were measured twice using OFDI at three pullback speeds. Differences in stent lengths between OFDI and microscopy and between two repetitive pullbacks were assessed to determine accuracy and reproducibility. Furthermore, three-dimensional (3D) reconstruction was used for evaluating image quality. With regard to differences in stent length between OFDI and microscopy, the intraclass correlation coefficient values were 0.985, 0.994, and 0.995 at 10, 20, and 40 mm/s, respectively. With regard to reproducibility, the values were 0.995, 0.996, and 0.996 at 10, 20, and 40 mm/s, respectively. 3D reconstruction showed a superior image quality at 10 and 20 mm/s compared with that at 40 mm/s. OFDI demonstrated high accuracy and reproducibility for longitudinal stent measurements. Moreover, its accuracy and reproducibility were remarkable at a higher pullback speed. A 20-mm/s pullback speed may be optimal for clinical and research purposes.

  11. Cardiac Calcification

    Directory of Open Access Journals (Sweden)

    Morteza Joorabian

    2011-05-01

    Full Text Available There is a spectrum of different types of cardiac"ncalcifications with the importance and significance"nof each type of cardiac calcification, especially"ncoronary artery calcification. Radiologic detection of"ncalcifications within the heart is quite common. The"namount of coronary artery calcification correlates"nwith the severity of coronary artery disease (CAD."nCalcification of the aortic or mitral valve may indicate"nhemodynamically significant valvular stenosis."nMyocardial calcification is a sign of prior infarction,"nwhile pericardial calcification is strongly associated"nwith constrictive pericarditis. A spectrum of different"ntypes of cardiac calcifications (linear, annular,"ncurvilinear,... could be seen in chest radiography and"nother imaging modalities. So a carful inspection for"ndetection and reorganization of these calcifications"nshould be necessary. Numerous modalities exist for"nidentifying coronary calcification, including plain"nradiography, fluoroscopy, intravascular ultrasound,"nMRI, echocardiography, and conventional, helical and"nelectron-beam CT (EBCT. Coronary calcifications"ndetected on EBCT or helical CT can be quantifie,"nand a total calcification score (Cardiac Calcification"nScoring may be calculated. In an asymptomatic"npopulation and/or patients with concomitant risk"nfactors like diabetes mellitus, determination of the"npresence of coronary calcifications identifies the"npatients at risk for future myocardial infarction and"ncoronary artery disease. In patients without coronary"ncalcifications, future cardiovascular events could"nbe excluded. Therefore, detecting and recognizing"ncalcification related to the heart on chest radiography"nand other imaging modalities such as fluoroscopy, CT"nand echocardiography may have important clinical"nimplications.

  12. Stage-dependent minimum bit resolution maps of full-parallel pipelined FFT/IFFT architectures incorporated in real-time optical orthogonal frequency division multiplexing transceivers

    Directory of Open Access Journals (Sweden)

    Junjie Zhang

    2014-08-01

    Full Text Available Fast Fourier transform (FFT and inverse FFT (IFFT are the fundamental algorithms at the heart of optical orthogonal frequency division multiplexing (OOFDM transceivers. The high digital signal processing (DSP complexity has become one of the most significant obstacles to experimentally demonstrating real-time high-capacity OOFDM transceivers. In this study, extensive numerical explorations are undertaken, for the first time, of the impacts of each individual transceiver DSP element on the inverse error vector magnitude (IEVM performance of the OOFDM transceivers incorporating full-parallel pipelined FFT/IFFT architectures. More importantly, FFT/IFFT stage-dependent minimum bit resolution maps are identified, based on which minimum bit resolutions of individual DSP elements of various FFT/IFFT stages can be easily selected according to chosen analogue-to-digital converter/digital-to-analogue converter resolutions. The validity and high accuracy of the identified maps are experimentally verified in field programmable gate array (FPGA-based platforms. In addition to great ease of practical OOFDM transceiver designs, the maps also significantly reduce the FPGA logic resource usage without degrading the overall transceiver IEVM performance.

  13. Urban-scale mapping of PM2.5 distribution via data fusion between high-density sensor network and MODIS Aerosol Optical Depth

    Science.gov (United States)

    Ba, Yu Tao; xian Liu, Bao; Sun, Feng; Wang, Li hua; Tang, Yu jia; Zhang, Da wei

    2017-04-01

    High-resolution mapping of PM2.5 is the prerequisite for precise analytics and subsequent anti-pollution interventions. Considering the large variances of particulate distribution, urban-scale mapping is challenging either with ground-based fixed stations, with satellites or via models. In this study, a dynamic fusion method between high-density sensor network and MODIS Aerosol Optical Depth (AOD) was introduced. The sensor network was deployed in Beijing ( > 1000 fixed monitors across 16000 km2 area) to provide raw observations with high temporal resolution (sampling interval 5 km). The MODIS AOD was calibrated to provide distribution map with low temporal resolution (daily) and moderate spatial resolution ( = 3 km). By encoding the data quality and defects (e.g. could, reflectance, abnormal), a hybrid interpolation procedure with cross-validation generated PM2.5 distribution with both high temporal and spatial resolution. Several no-pollutant and high-pollution periods were tested to validate the proposed fusion method for capturing the instantaneous patterns of PM2.5 emission.

  14. Use of ENVISAT ASAR Global Monitoring Mode to complement optical data in the mapping of rapid broad-scale flooding in Pakistan

    Directory of Open Access Journals (Sweden)

    D. O'Grady

    2011-11-01

    Full Text Available Envisat ASAR Global Monitoring Mode (GM data are used to produce maps of the extent of the flooding in Pakistan which are made available to the rapid response effort within 24 h of acquisition. The high temporal frequency and independence of the data from cloud-free skies makes GM data a viable tool for mapping flood waters during those periods where optical satellite data are unavailable, which may be crucial to rapid response disaster planning, where thousands of lives are affected. Image differencing techniques are used, with pre-flood baseline image backscatter values being deducted from target values to eliminate regions with a permanent flood-like radar response due to volume scattering and attenuation, and to highlight the low response caused by specular reflection by open flood water. The effect of local incidence angle on the received signal is mitigated by ensuring that the deducted image is acquired from the same orbit track as the target image. Poor separability of the water class with land in areas beyond the river channels is tackled using a region-growing algorithm which seeks threshold-conformance from seed pixels at the center of the river channels. The resultant mapped extents are tested against MODIS SWIR data where available, with encouraging results.

  15. Mapping breast cancer blood flow index, composition, and metabolism in a human subject using combined diffuse optical spectroscopic imaging and diffuse correlation spectroscopy

    Science.gov (United States)

    Yazdi, Hossein S.; O'Sullivan, Thomas D.; Leproux, Anais; Hill, Brian; Durkin, Amanda; Telep, Seraphim; Lam, Jesse; Yazdi, Siavash S.; Police, Alice M.; Carroll, Robert M.; Combs, Freddie J.; Strömberg, Tomas; Yodh, Arjun G.; Tromberg, Bruce J.

    2017-04-01

    Diffuse optical spectroscopic imaging (DOSI) and diffuse correlation spectroscopy (DCS) are model-based near-infrared (NIR) methods that measure tissue optical properties (broadband absorption, μa, and reduced scattering, μs‧) and blood flow (blood flow index, BFI), respectively. DOSI-derived μa values are used to determine composition by calculating the tissue concentration of oxy- and deoxyhemoglobin (HbO2, HbR), water, and lipid. We developed and evaluated a combined, coregistered DOSI/DCS handheld probe for mapping and imaging these parameters. We show that uncertainties of 0.3 mm-1 (37%) in μs‧ and 0.003 mm-1 (33%) in μa lead to ˜53% and 9% errors in BFI, respectively. DOSI/DCS imaging of a solid tissue-simulating flow phantom and a breast cancer patient reveals well-defined spatial distributions of BFI and composition that clearly delineates both the flow channel and the tumor. BFI reconstructed with DOSI-corrected μa and μs‧ values had a tumor/normal contrast of 2.7, 50% higher than the contrast using commonly assumed fixed optical properties. In conclusion, spatially coregistered imaging of DOSI and DCS enhances intrinsic tumor contrast and information content. This is particularly important for imaging diseased tissues where there are significant spatial variations in μa and μs‧ as well as potential uncoupling between flow and metabolism.

  16. OTDM-to-WDM Conversion Based on Time-to-Frequency Mapping by Time-Domain Optical Fourier Transformation

    DEFF Research Database (Denmark)

    Palushani, Evarist; Mulvad, Hans Christian Hansen; Galili, Michael

    2012-01-01

    a dispersive medium followed by phase modulation; the latter being achieved by a four-wave mixing process with linearly chirped pump pulses. Both numerical and experimental investigations of the OTDM-to-WDM conversion technique are carried out. Experimental validations are performed on......This paper reports on the utilization of the timedomain optical Fourier transformation (OFT) technique for serial-to-parallel conversion of optical time division multiplexed (OTDM) data tributaries into dense wavelength division multiplexed (DWDM) channels. The OFT is implemented by using...

  17. A review of the application of optical and radar remote sensing data fusion to land use mapping and monitoring

    NARCIS (Netherlands)

    Joshi, Neha; Baumann, Matthias; Ehammer, Andrea; Reiche, Johannes

    2016-01-01

    The wealth of complementary data available from remote sensing missions can hugely aid efforts towards accurately determining land use and quantifying subtle changes in land use management or intensity. This study reviewed 112 studies on fusing optical and radar data, which offer unique spectral

  18. Multi-Frequency Optical-Depth Maps and the Case for Free-Free Absorption in Two Compact Symmetric Radio Sources: the CSO candidate J1324+4048 and the CSO J0029+3457

    CERN Document Server

    Marr, Jonathan M; Read, James; Taylor, Gregory B; Morris, Aaron O

    2013-01-01

    We obtained dual-polarization VLBI observations at six frequencies of the compact symmetric object J0029+3457 and the CSO candidate J1324+4048. By comparing the three lower-frequency maps with extrapolations of the high frequency maps we produced maps of the optical depth as a function of frequency. The morphology of the optical-depth maps of J1324+4048 is strikingly smooth, suggestive of a foreground screen of absorbing gas. The spectra at the intensity peaks fit a simple free-free absorption model, with a reduced chi square ~ 2, better than a simple synchrotron self-absorption model, in which the reduced chi square ~ 3.5 - 5.5. We conclude that the case for free-free absorption in J1324+4048 is strong. The optical-depth maps of J0029+3457 exhibit structure, but the morphology does not correlate with that in the intensity maps. The fit of the spectra at the peaks to a simple free-free absorption model yields a reduced chi square ~ 1, but since the turnover is gradual the fit is relatively insensitive to the ...

  19. Miniature lightweight X-ray optics (MiXO) for surface elemental composition mapping of asteroids and comets

    Science.gov (United States)

    Hong, Jaesub; Romaine, Suzanne

    2016-02-01

    The compositions of diverse planetary bodies are of fundamental interest to planetary science, providing clues to the formation and evolutionary history of the target bodies and the solar system as a whole. Utilizing the X-ray fluorescence unique to each atomic element, X-ray imaging spectroscopy is a powerful diagnostic tool of the chemical and mineralogical compositions of diverse planetary bodies. Until now the mass and volume of focusing X-ray optics have been too large for resource-limited in situ missions, so near-target X-ray observations of planetary bodies have been limited to simple collimator-type X-ray instruments. We introduce a new Miniature lightweight Wolter-I focusing X-ray Optics (MiXO) using metal-ceramic hybrid X-ray mirrors based on electroformed nickel replication and plasma thermal spray processes. MiXO can enable compact, powerful imaging X-ray telescopes suitable for future planetary missions. We illustrate the need for focusing X-ray optics in observing relatively small planetary bodies such as asteroids and comet nuclei. We present a few example configurations of MiXO telescopes and demonstrate their superior performance in comparison to an alternative approach, micro-pore optics, which is being employed for the first planetary focusing X-ray telescope, the Mercury Imaging X-ray Spectrometer-T onboard Bepicolumbo. X-ray imaging spectroscopy using MiXO will open a large new discovery space in planetary science and will greatly enhance our understanding of the nature and origin of diverse planetary bodies.

  20. Mueller-matrix mapping of optically anisotropic fluorophores of molecular biological tissues in the diagnosis of death causes

    Science.gov (United States)

    Ushenko, A. G.; Dubolazov, A. V.; Ushenko, V. A.; Ushenko, Yu. A.; Pidkamin, L. Y.; Soltys, I. V.; Zhytaryuk, V. G.; Pavlyukovich, N.

    2016-09-01

    A model of generalized optical anisotropy of polycrystalline networks of albumin and globulin of human brain liquor has been suggested. The polarization-phase method of spatial and frequency differentiation of linear and circular birefringence coordinate distributions have been analytically substantiated. A set of criteria of the dynamics of necrotic changes of polarization-phase images of liquor polycrystalline films for determination of death coming prescription has been detected and substantiated.

  1. Miniature lightweight x-ray optics (MiXO) for surface elemental composition mapping of asteroids and comets

    CERN Document Server

    Hong, Jaesub

    2016-01-01

    The compositions of diverse planetary bodies are of fundamental interest to planetary science, providing clues to the formation and evolutionary history of the target bodies and the Solar system as a whole. Utilizing the X-ray fluorescence unique to each atomic element, X-ray imaging spectroscopy is a powerful diagnostic tool of the chemical and mineralogical compositions of diverse planetary bodies. Until now the mass and volume of focusing X-ray optics have been too large for resource-limited in-situ missions, so near-target X-ray observations of planetary bodies have been limited to simple collimator-type X-ray instruments. We introduce a new Miniature lightweight Wolter-I focusing X-ray Optics (MiXO) using metal-ceramic hybrid X-ray mirrors based on electroformed nickel replication and plasma thermal spray processes. MiXO can enable compact, powerful imaging X-ray telescopes suitable for future planetary missions. We illustrate the need for focusing X-ray optics in observing relatively small planetary bod...

  2. Congenital optic tract hypoplasia.

    Science.gov (United States)

    Hatsukawa, Yoshikazu; Fujio, Takahiro; Nishikawa, Masanori; Taylor, David

    2015-08-01

    We report a case of isolated unilateral optic tract hypoplasia, described only twice previously. Bilateral optic disk hypoplasia was seen ophthalmoscopically and visual field studies showed an incongruous right homonymous hemianopia. Magnetic resonance imaging showed bilateral hypoplasia of both optic nerves and the left optic tract. Spectral domain optical coherence tomography mapping correlated well with the visual field studies.

  3. An integrated high-performance beam optics-nuclear processes framework with hybrid transfer map-Monte Carlo particle transport and optimization

    Energy Technology Data Exchange (ETDEWEB)

    Bandura, L., E-mail: bandura@msu.ed [Argonne National Laboratory, Argonne, IL 60439 (United States); Erdelyi, B. [Argonne National Laboratory, Argonne, IL 60439 (United States); Northern Illinois University, DeKalb, IL 60115 (United States); Nolen, J. [Argonne National Laboratory, Argonne, IL 60439 (United States)

    2010-12-01

    An integrated beam optics-nuclear processes framework is essential for accurate simulation of fragment separator beam dynamics. The code COSY INFINITY provides powerful differential algebraic methods for modeling and beam dynamics simulations in absence of beam-material interactions. However, these interactions are key for accurately simulating the dynamics of heavy ion fragmentation and fission. We have developed an extended version of the code that includes these interactions, and a set of new tools that allow efficient and accurate particle transport: by transfer map in vacuum and by Monte Carlo methods in materials. The new framework is presented, along with several examples from a preliminary layout of a fragment separator for a facility for rare isotope beams.

  4. 三维标测系统指导下复杂心律失常的经导管射频消融治疗%Three-dimensional mapping for radiofrequency catheter ablation of complex cardiac arrhythmias

    Institute of Scientific and Technical Information of China (English)

    洪浪; 王洪; 赖珩莉; 尹秋林; 陈章强; 陆林祥; 邱赞; 肖承伟

    2009-01-01

    目的:探讨在三维标测系统指导下,经导管复杂心律失常射频消融治疗的有效性与安全性. 方法:选择2006年2月至2008年9月住院患者98例,其中阵发性房颤50例、持续性或永久性房颤6例、心房扑动9例、房性心动过速(房速)9例、室性心动过速(室速)或频发室性早搏24例.在EnSite NavX或Array系统(72例)或CARTO系统(26例)指导下进行射频消融手术. 结果:84例一次手术成功(85.71%),7例再次导管消融成功,成功率合计92.86%.50例房颤一次手术成功,5例再次消融后3例成功.9例心房扑动患者中7例一次手术成功,1例复发再次消融成功.9例房速中7例一次手术成功,1例复发再次消融成功.24例室速、室早患者中20例一次消融成功,4例行再次消融2例成功.共有并发症6例:心包填塞4例,左前降支远端栓塞1例、术后肺栓塞1例. 结论:三维标测系统可清晰地显示心脏三维立体结构,对复杂疑难心律失常的射频消融治疗具有较好的指导作用,提高消融的成功率并增加手术安全性.%Objective:To explore the validity and safety of radiofrequeney catheter ablation of complex cardiac arrhythmias guided by a three-dimensional mapping system. Methods.. A cohort of 98 consecutive inpatients were registered from February 2006 to September 2008, of which 68 cases were male and 30 cases were female, with an average age of (50.2 ± 19. 7) years ranging from 9 to 88 years of age. These patients suffered from various arrhythmias including paroxysmal atrial fibrillation (50 cases), persistent or permanent atrial fibrillation (6 cases), atrial flutter (9 cases), atrial tachy-cardia (9 cases), ventricular tachycardia or frequent episode ventricular premature beat (24 cases). A total of 72 cases underwent radiofrequency catheter ablation of arrhythmias guided by an En-Site3000/NavX or Array mapping system, and 26 cases guided by a CARTO mapping system. Re-suits:Successful ablation of

  5. Mapping the expansion of galamsey gold mines in the cocoa growing area of Ghana using optical remote sensing

    Science.gov (United States)

    Snapir, B.; Simms, D. M.; Waine, T. W.

    2017-06-01

    Artisanal gold mining (galamsey) and cocoa farming are essential sources of income for local populations in Ghana. Unfortunately the former poses serious threats to the environment and human health, and conflicts with cocoa farming and other livelihoods. Timely and spatially referenced information on the extent of galamsey is needed to understand and limit the negative impacts of mining. To address this, we use multi-date UK-DMC2 satellite images to map the extent and expansion of galamsey from 2011 to 2015. We map the total area of galamsey in 2013 over the cocoa growing area, using k-means clustering on a cloud-free 2013 image with strong spectral contrast between galamsey and the surrounding vegetation. We also process a pair of hazy images from 2011 and 2015 with Multivariate Alteration Detection to map the 2011-2015 galamsey expansion in a subset, labelled the change area. We use a set of visually interpreted random sample points to compute bias-corrected area estimates. We also delineate an indicative impact zone of pollution proportional to the density of galamsey, assuming a maximum radius of 10 km. In the cocoa growing area of Ghana, the estimated total area of galamsey in 2013 is 27,839 ha with an impact zone of 551,496 ha. In the change area, galamsey has more than tripled between 2011 and 2015, resulting in 603 ha of direct encroachment into protected forest reserves. Assuming the same growth rate for the rest of the cocoa growing area, the total area of galamsey in 2015 is estimated at 43,879 ha. Galamsey is developing along most of the river network (Offin, Ankobra, Birim, Anum, Tano), with downstream pollution affecting both land and water.

  6. 思维导图在光学课程教学中的应用研究%The Application Research for "Mind Map" in Optics Teaching

    Institute of Scientific and Technical Information of China (English)

    杨晓莉; 刘波

    2015-01-01

    Based on the present situation of teaching in colleges and universities and talent training objectives in modern society, the Mind Map as a visual teaching auxiliary tool is used in the teaching classes. In this paper, the important role and application strategy of the teaching method of the Mind Mapping are studied, taking undergraduate optics course teaching as an example. It is hoped that the research results can promote the reform and inno-vation of teaching.%本文基于普通本科高校的教学现状及现代社会的人才培养目标,将思维导图作为一种可视化教学辅助工具引入教学课堂,以物理本科光学课程教学为例,探究了思维导图方法在光学教学课堂上的重要作用和应用策略,希望能对物理光学课堂的教改与创新有一定的推动作用.

  7. Identification of Potential Mediators of Retinotopic Mapping: A Comparative Proteomic Analysis of Optic Nerve from WT and Phr1 Retinal Knockout Mice

    Science.gov (United States)

    Lee, Andrew R.; Lamb, Rachel R.; Chang, Julietta H.; Erdmann-Gilmore, Petra; Lichti, Cheryl F.; Rohrs, Henry W.; Malone, James P.; Wairkar, Yogesh P.; DiAntonio, Aaron; Townsend, R. Reid; Culican, Susan M.

    2012-01-01

    Retinal ganglion cells (RGCs) transmit visual information topographically from the eye to the brain, creating a map of visual space in retino-recipient nuclei (retinotopy). This process is affected by retinal activity and by activity-independent molecular cues. Phr1, which encodes a presumed E3 ubiquitin ligase (PHR1), is required presynaptically for proper placement of RGC axons in the lateral geniculate nucleus and the superior colliculus, suggesting that increased levels of PHR1 target proteins may be instructive for retinotopic mapping of retinofugal projections. To identify potential target proteins, we conducted a proteomic analysis of optic nerve to identify differentially abundant proteins in the presence or absence of Phr1 in RGCs. 1D gel electrophoresis identified a specific band in controls that was absent in mutants. Targeted proteomic analysis of this band demonstrated the presence of PHR1. Additionally, we conducted an unbiased proteomic analysis that identified 30 proteins as being significantly different between the two genotypes. One of these, heterogeneous nuclear ribonucleoprotein M (hnRNP-M), regulates antero-posterior patterning in invertebrates and can function as a cell surface adhesion receptor in vertebrates. Thus we have demonstrated that network analysis of quantitative proteomic data is a useful approach for hypothesis generation and for identifying biologically relevant targets in genetically altered biological models. PMID:22985349

  8. Optical flow and image segmentation analysis for noninvasive precise mapping of microwave thermal ablation in X-ray CT scans - ex vivo study.

    Science.gov (United States)

    Ziv, Omri; Goldberg, S Nahum; Nissenbaum, Yitzhak; Sosna, Jacob; Weiss, Noam; Azhari, Haim

    2017-09-20

    To develop image processing algorithms for noninvasive mapping of microwave thermal ablation using X-ray CT. Ten specimens of bovine liver were subjected to microwave ablation (20-80 W, 8 min) while scanned by X-ray CT at 5 s intervals. Specimens were cut and manually traced by two observers. Two algorithms were developed and implemented to map the ablation zone. The first algorithm utilises images segmentation of Hounsfield units changes (ISHU). The second algorithm utilises radial optical flow (ROF). Algorithm sensitivity to spatiotemporal under-sampling was assessed by decreasing the acquisition rate and reducing the number of acquired projections used for image reconstruction in order to evaluate the feasibility of implementing radiation reduction techniques. The average radial discrepancy between the ISHU and ROF contours and the manual tracing were 1.04±0.74 and 1.16±0.79mm, respectively. When diluting the input data, the ISHU algorithm retained its accuracy, ranging from 1.04 to 1.79mm. By contrast, the ROF algorithm performance became inconsistent at low acquisition rates. Both algorithms were not sensitive to projections reduction, (ISHU: 1.24±0.83mm, ROF: 1.53±1.15mm, for reduction by eight fold). Ablations near large blood vessels affected the ROF algorithm performance (1.83±1.30mm; p mapping algorithms can provide highly accurate contouring of the ablation zone at low scan rates. The ISHU algorithm may be more suitable for clinical practice as it appears more robust when radiation dose reduction strategies are employed and when the ablation zone is near large blood vessels.

  9. Highly enhanced optical properties of indocyanine green/perfluorocarbon nanoemulsions for efficient lymph node mapping using near-infrared and magnetic resonance imaging

    Science.gov (United States)

    Bae, Pan Kee; Jung, Juyeon; Chung, Bong Hyun

    2014-03-01

    The near-infrared (NIR) fluorescence probe has better tissue penetration and lower autofluorescence. Indocyanine green (ICG) is an NIR organic dye for extensive biological application, and it has been clinically approved for human medical imaging and diagnosis. However, application of this dye is limited by its numerous disadvantageous properties in aqueous solution, including its concentration-dependent aggregation, poor aqueous stability in vitro, and low quantum yield. Its use in molecular imaging probes is limited because it loses fluorescence after binding to nonspecific plasma proteins, leading to rapid elimination from the body with a half-life of 2 - 4 min. In this study, the multifunctional perfluorocarbon (PFC)/ICG nanoemulsions were investigated with the aim of overcoming these limitations. The PFC/ICG nanoemulsions as a new type of delivery vehicle for contrast agents have both NIR optical imaging and 19 F-MR imaging moieties. These nanoemulsions exhibited less aggregation, increased fluorescence intensity, long-term stability, and physicochemical stability against external light and temperature compared to free aqueous ICG. Also, the PFC/ICG bimodal nanoemulsions allow excellent detection of lymph nodes in vivo through NIR optical imaging and 19 F-MR imaging. This result showed the suitability of the proposed nanoemulsions for non-invasive lymph node mapping as they enable long-time detection of lymph nodes.

  10. Cross-validation of serial optical coherence scanning and diffusion tensor imaging: a study on neural fiber maps in human medulla oblongata.

    Science.gov (United States)

    Wang, Hui; Zhu, Junfeng; Reuter, Martin; Vinke, Louis N; Yendiki, Anastasia; Boas, David A; Fischl, Bruce; Akkin, Taner

    2014-10-15

    We established a strategy to perform cross-validation of serial optical coherence scanner imaging (SOCS) and diffusion tensor imaging (DTI) on a postmortem human medulla. Following DTI, the sample was serially scanned by SOCS, which integrates a vibratome slicer and a multi-contrast optical coherence tomography rig for large-scale three-dimensional imaging at microscopic resolution. The DTI dataset was registered to the SOCS space. An average correlation coefficient of 0.9 was found between the co-registered fiber maps constructed by fractional anisotropy and retardance contrasts. Pixelwise comparison of fiber orientations demonstrated good agreement between the DTI and SOCS measures. Details of the comparison were studied in regions exhibiting a variety of fiber organizations. DTI estimated the preferential orientation of small fiber tracts; however, it didn't capture their complex patterns as SOCS did. In terms of resolution and imaging depth, SOCS and DTI complement each other, and open new avenues for cross-modality investigations of the brain.

  11. Toward noninvasive optical human brain mapping: improvements of the spectral, temporal, and spatial resolution of near-infrared spectroscopy

    Science.gov (United States)

    Heekeren, Hauke R.; Wenzel, Rudiger; Obrig, Hellmuth; Ruben, Jan; Ndayisaba, J.-P.; Luo, Qingming; Dale, A.; Nioka, Shoko; Kohl-Bareis, Matthias; Dirnagl, Ulrich; Villringer, Arno; Chance, Britton

    1997-08-01

    Near-infrared spectroscopy (NIRS) can detect changes in cerebral hemoglobin oxygenation in response to motor, visual or cognitive stimulation. This study explored potential improvements for functional human brain mapping with NIRS: (1) So far, only primary cortical areas, like motor cortex or primary visual areas were studied. We tested the feasibility of identifying an extrastriate visual motion area (MT) with single site NIRS. (2) The temporal resolution of commercial systems is on the order of seconds and their spectral resolution is poor. We tested the feasibility of the detection of cerebral hemoglobin oxygenation changes during visual stimulation at high temporal (100 ms) and spectral resolution (5 nm) using a whole spectrum approach (CCD-NIRS). (3) The spatial resolution of commercial systems is poor. In this study we used a 16 channel functional NIRS-imaging device to test the feasibility of mapping changes in cortical blood volume during visual stimulation (over primary and secondary areas). We show that (1) even conventional single site NIRS allows to identify secondary visual areas, (2) a CCD-NIRS system affords a high temporal (100 ms) and spectral (5 nm) resolution for the detection of changes in cerebral hemoglobin oxygenation during visual stimulation, (3) functional NIRS- imaging can localize focal blood volume changes over both primary and secondary cortical areas.

  12. Optogenetic control of the cardiac conduction system (Conference Presentation)

    Science.gov (United States)

    Crocini, Claudia; Ferrantini, Cecilia; Coppini, Raffaele; Loew, Leslie M.; Cerbai, Elisabetta; Poggesi, Corrado; Pavone, Francesco S.; Sacconi, Leonardo

    2016-03-01

    Fatal cardiac arrhythmias are a major medical and social issue in Western countries. Current implantable pacemaker/defibrillators have limited effectiveness and are plagued by frequent malfunctions and complications. Here, we aim at setting up a new method to map and control the electrical activity of whole isolated mouse hearts. We employ a transgenic mouse model expressing Channel Rhodopsin-2 (ChR2) in the heart coupled with voltage optical mapping to monitor and control action potential propagation. The whole heart is loaded with the fluorinated red-shifted voltage sensitive dye (di-4-ANBDQPQ) and imaged with the central portion (128 x 128 pixel) of sCMOS camera operating at frame rate of 1.6 kHz. The wide-field imaging system is implemented with a random access ChR2 activation developed using two orthogonally-mounted acousto-optical deflectors (AODs). AODs rapidly scan different sites of the sample with a commutation time of 4 μs, allowing us to design ad hoc ChR2-stimulation pattern. First, we demonstrate the capability of our system in manipulating the conduction system of the whole mouse heart by changing the electrical propagation features. Then, we explore the efficacy of the random access ChR2 stimulation in inducing arrhythmias as well as to restore the cardiac sinus rhythm during an arrhythmic event. This work shows the potentiality of this new method for studying the mechanisms of arrhythmias and reentry in healthy and diseased hearts, as well as the basis of intra-ventricular dyssynchrony.

  13. Development of Genesis Solar Wind Sample Cleanliness Assessment: Initial Report on Sample 60341 Optical Imagery and Elemental Mapping

    Science.gov (United States)

    Gonzalez, C. P.; Goreva, Y. S.; Burnett, D. S.; Woolum, D.; Jurewicz, A. J.; Allton, J. H.; Rodriguez, P. J.; Burkett, P. J.

    2014-01-01

    Since 2005 the Genesis science team has experimented with techniques for removing the contaminant particles and films from the collection surface of the Genesis fragments. A subset of 40 samples have been designated as "cleaning matrix" samples. These are small samples to which various cleaning approaches are applied and then cleanliness is assessed optically, by TRXRF, SEM, ToF-SIMS, XPS, ellipsometry or other means [1-9]. Most of these sam-ples remain available for allocation, with cleanliness assessment data. This assessment allows evaluation of various cleaning techniques and handling or analytical effects. Cleaning techniques investigated by the Genesis community include acid/base etching, acetate replica peels, ion beam, and CO2 snow jet cleaning [10-16]. JSC provides surface cleaning using UV ozone exposure and ultra-pure water (UPW) [17-20]. The UPW rinse is commonly used to clean samples for handling debris between processing by different researchers. Optical microscopic images of the sample taken before and after UPW cleaning show what has been added or removed during the cleaning process.

  14. Ethanol exposure alters early cardiac function in the looping heart: a mechanism for congenital heart defects?

    Science.gov (United States)

    Karunamuni, Ganga; Gu, Shi; Doughman, Yong Qiu; Peterson, Lindsy M; Mai, Katherine; McHale, Quinn; Jenkins, Michael W; Linask, Kersti K; Rollins, Andrew M; Watanabe, Michiko

    2014-02-01

    Alcohol-induced congenital heart defects are frequently among the most life threatening and require surgical correction in newborns. The etiology of these defects, collectively known as fetal alcohol syndrome, has been the focus of much study, particularly involving cellular and molecular mechanisms. Few studies have addressed the influential role of altered cardiac function in early embryogenesis because of a lack of tools with the capability to assay tiny beating hearts. To overcome this gap in our understanding, we used optical coherence tomography (OCT), a nondestructive imaging modality capable of micrometer-scale resolution imaging, to rapidly and accurately map cardiovascular structure and hemodynamics in real time under physiological conditions. In this study, we exposed avian embryos to a single dose of alcohol/ethanol at gastrulation when the embryo is sensitive to the induction of birth defects. Late-stage hearts were analyzed using standard histological analysis with a focus on the atrio-ventricular valves. Early cardiac function was assayed using Doppler OCT, and structural analysis of the cardiac cushions was performed using OCT imaging. Our results indicated that ethanol-exposed embryos developed late-stage valvuloseptal defects. At early stages, they exhibited increased regurgitant flow and developed smaller atrio-ventricular cardiac cushions, compared with controls (uninjected and saline-injected embryos). The embryos also exhibited abnormal flexion/torsion of the body. Our evidence suggests that ethanol-induced alterations in early cardiac function have the potential to contribute to late-stage valve and septal defects, thus demonstrating that functional parameters may serve as early and sensitive gauges of cardiac normalcy and abnormalities.

  15. Three very high resolution optical images for land use mapping of a suburban catchment: input to distributed hydrological models

    Science.gov (United States)

    Jacqueminet, Christine; Kermadi, Saïda; Michel, Kristell; Jankowfsky, Sonja; Braud, Isabelle; Branger, Flora; Beal, David; Gagnage, Matthieu

    2010-05-01

    Keywords : land cover mapping, very high resolution, remote sensing processing techniques, object oriented approach, distributed hydrological model, peri-urban area Urbanization and other modifications of land use affect the hydrological cycle of suburban catchments. In order to quantify these impacts, the AVuPUR project (Assessing the Vulnerability of Peri-Urban Rivers) is currently developing a distributed hydrological model that includes anthropogenic features. The case study is the Yzeron catchment (150 km²), located close to Lyon city, France. This catchment experiences a growing of urbanization and a modification of traditional land use since the middle of the 20th century, resulting in an increase of flooding, water pollution and river banks erosion. This contribution discusses the potentials of automated data processing techniques on three different VHR images, in order to produce appropriate and detailed land cover data for the models. Of particular interest is the identification of impermeable surfaces (buildings, roads, and parking places) and permeable surfaces (forest areas, agricultural fields, gardens, trees…) within the catchment, because their infiltration capacity and their impact on runoff generation are different. Three aerial and spatial images were acquired: (1) BD Ortho IGN aerial images, 0.50 m resolution, visible bands, may 5th 2008; (2) QuickBird satellite image, 2.44 m resolution, visible and near-infrared bands, august 29th 2008; (3) Spot satellite image, 2.50 m resolution, visible and near-infrared bands, September 22nd 2008. From these images, we developed three image processing methods: (1) a pixel-based method associated to a segmentation using Matlab®, (2) a pixel-based method using ENVI®, (3) an object-based classification using Definiens®. We extracted six land cover types from the BD Ortho IGN (visible bands) and height classes from the satellite images (visible and near infrared bands). The three classified images are

  16. Cardiac MRI in Athletes

    NARCIS (Netherlands)

    Luijkx, T.

    2012-01-01

    Cardiac magnetic resonance imaging (CMR) is often used in athletes to image cardiac anatomy and function and is increasingly requested in the context of screening for pathology that can cause sudden cardiac death (SCD). In this thesis, patterns of cardiac adaptation to sports are investigated with C

  17. Resolution of abnormal cardiac MRI T2 signal following immune suppression for cardiac sarcoidosis.

    Science.gov (United States)

    Crouser, Elliott D; Ruden, Emily; Julian, Mark W; Raman, Subha V

    2016-08-01

    Cardiac MR (CMR) with late gadolinium enhancement is commonly used to detect cardiac damage in the setting of cardiac sarcoidosis. The addition of T2 mapping to CMR was recently shown to enhance cardiac sarcoidosis detection and correlates with increased cardiac arrhythmia risk. This study was conducted to determine if CMR T2 abnormalities and related arrhythmias are reversible following immune suppression therapy. A retrospective study of subjects with cardiac sarcoidosis with abnormal T2 signal on baseline CMR and a follow-up CMR study at least 4 months later was conducted at The Ohio State University from 2011 to 2015. Immune suppression treated participants had a significant reduction in peak myocardial T2 value (70.0±5.5 vs 59.2±6.1 ms, pretreatment vs post-treatment; p=0.017), and 83% of immune suppression treated subjects had objective improvement in cardiac arrhythmias. Two subjects who had received inadequate immune suppression treatment experienced progression of cardiac sarcoidosis. This report indicates that abnormal CMR T2 signal represents an acute inflammatory manifestation of cardiac sarcoidosis that is potentially reversible with adequate immune suppression therapy.

  18. The optics of the low energy FFAG cell of the eRHIC collider, using realistic field maps

    Energy Technology Data Exchange (ETDEWEB)

    Tsoupas, N. [Brookhaven National Lab. (BNL), Upton, NY (United States); Brooks, S. [Brookhaven National Lab. (BNL), Upton, NY (United States); Jain, A. [Brookhaven National Lab. (BNL), Upton, NY (United States); Meot, F. [Brookhaven National Lab. (BNL), Upton, NY (United States); Mahler, G. [Brookhaven National Lab. (BNL), Upton, NY (United States); Ptitsyn, V. [Brookhaven National Lab. (BNL), Upton, NY (United States); Trbojevic, D. [Brookhaven National Lab. (BNL), Upton, NY (United States); Severance, M. [Brookhaven National Lab. (BNL), Upton, NY (United States)

    2015-07-02

    The proposed electron accelerator of the eRHIC complex [1] will use a 1.32 GeV Energy Recovery Linac (ERL) to accelerate the e-bunches to a top energy of 21.2 GeV before they collide with the hadron bunches. The e-bunches attain the 21.2 GeV energy after passing through the ERL 16 times as they recirculate in two rings which are placed alongside the RHIC hadron accelerator. The two rings [1] are made of periodic cells and each cell is made of one focusing and one defocusing permanent magnet qudrupole. In this paper we present the electromagnetic calculations of the 2D and 3D models of a cell which is comprised of two modified Halbach quadrupoles [4], and the optical properties of the cell.

  19. Mapping of Impervious Surfaces and Green Vegetation Fraction in Urban Areas Using High-Resolution Optical- and SAR- Data

    Science.gov (United States)

    Mack, Benjamin; Becker, Frauke; Menz, Gunther

    2010-12-01

    Impervious surfaces (IS) and vegetated surfaces (VS) are two important variables for urban planning. Both are related to surface biophysical processes (e. g. urban heat island) and the quality of life in urban environments. The new generation of spatially very high resolution satellite sensors (e.g. RapidEye, or TerraSAR-X) show promising capabilities to extract these variables in relevant detail and hence to overcome some of the limitations using traditional approaches. In this study, we show a simple workflow for the synergistic use of high-resolution optical and SAR data for the retrieval of detailed information of IS and VS. Here, the focus is on the processing step of vegetation extraction. Three approaches - linear Spectral Mixture Analysis, per-pixel, and segment-oriented classification - are compared. It will also be analyzed if an explicit shadow analysis leads to a significant improvement of the products.

  20. Near-field optical mapping of single gold nano particles using photo-induced polymer movement of azo-polymers

    Science.gov (United States)

    Ishitobi, Hidekazu; Kobayashi, Taka-aki; Ono, Atsushi; Inouye, Yasushi

    2017-03-01

    In this study, polymer movement was induced in azo-polymer films by optical near-fields generated in the vicinity of single gold nano particles (GNPs) to visualize near-field distribution with a spatial resolution beyond the diffraction limit of light. A linearly polarized (Ex) laser beam was irradiated into GNPs to excite local surface plasmon resonance that enhanced the near-field around the GNPs. The findings indicated that different GNP diameters (that is, 50 nm and 80 nm) resulted in different deformation patterns on the films. The results were compared with theoretical calculations of near-field distributions, and the observations revealed that the deformation patterns were dependent on the ratio between Ex and Ey wherein each possessed a different field distribution.

  1. Development of the cardiac conduction system and cardiac anatomy in relation to genesis and treatment of arrhythmias

    NARCIS (Netherlands)

    Jongbloed, Monica Reina Maria

    2006-01-01

    Clinical mapping studies demonstrate that cardiac arrhythmias are often encountered at specific anatomical sites. The anatomical development of the heart and the cardiac conduction system are narrowly related. The thesis starts with a Chapter 1 that provides a general overview of the basics of cardi

  2. Space Telescope and Optical Reverberation Mapping Project. IV. Anomalous behavior of the broad ultraviolet emission lines in NGC 5548

    CERN Document Server

    Goad, M R; De Rosa, G; Kriss, G A; Edelson, R; Barth, A J; Ferland, G J; Kochanek, C S; Netzer, H; Peterson, B M; Bentz, M C; Bisogni, S; Crenshaw, D M; Denney, K D; Ely, J; Fausnaugh, M M; Grier, C J; Gupta, A; Horne, K D; Kaastra, J; Pancoast, A; Pei, L; Pogge, R W; Skielboe, A; Starkey, D; Vestergaard, M; Zu, Y; Anderson, M D; Arevalo, P; Bazhaw, C; Borman, G A; Boroson, T A; Bottorff, M C; Brandt, W N; Breeveld, A A; Brewer, B J; Cackett, E M; Carini, M T; Croxall, K V; Bonta, E Dalla; de Lorenzo-Caceres, A; Dietrich, M; Efimova, N V; Evans, P A; Filippenko, A V; Flatland, K; Gehrels, N; Geier, S; Gelbord, G M; Gonzalez, L; Gorjian, V; Grupe, D; Hall, P B; Hicks, S; Horenstein, D; Hutchison, T; Im, M; Jensen, J J; Joner, M D; Jones, J; Kaspi, S; Kelly, B C; Kennea, J A; Kim, M; Kim, S C; Klimanov, S A; Larionov, V M; Lee, J C; Leonard, D C; Lira, P; MacInnis, F; Manne-Nicholas, E R; Mathur, S; McHardy, I M; Montouri, C; Musso, R; Nazarov, S V; Norris, R P; Nousek, J A; Okhmat, D N; Papadakis, I; Parks, J R; Pott, J -U; Rafter, S E; Rix, H -W; Saylor, D A; Schimoia, J S; Schnulle, K; Sergeev, S G; Siegel, M; Spencer, M; Sung, H -I; Teems, K G; Treu, T; Turner, C S; Uttley, P; Villforth, C; Weiss, Y; Woo, J -H; Yan, H; Young, S; Zheng, W -K

    2016-01-01

    During an intensive Hubble Space Telescope (HST) Cosmic Origins Spectrograph (COS) UV monitoring campaign of the Seyfert~1 galaxy NGC 5548 performed from 2014 February to July, the normally highly correlated far-UV continuum and broad emission-line variations decorrelated for ~60 to 70 days, starting ~75 days after the first HST/COS observation. Following this anomalous state, the flux and variability of the broad emission lines returned to a more normal state. This transient behavior, characterised by significant deficits in flux and equivalent width of the strong broad UV emission lines, is the first of its kind to be unambiguously identified in an active galactic nucleus reverberation mapping campaign. The largest corresponding emission-line flux deficits occurred for the high-ionization collisionally excited lines, C IV and Si IV(+O IV]), and also He II(+O III]), while the anomaly in Ly-alpha was substantially smaller. This pattern of behavior indicates a depletion in the flux of photons with E_{\\rm ph} >...

  3. Terminated and Tailbiting Spatially Coupled Codes with Optimized Bit Mappings for Spectrally Efficient Fiber-Optical Systems

    CERN Document Server

    Häger, Christian; Brännström, Fredrik; Alvarado, Alex; Agrell, Erik

    2014-01-01

    We study the design of spectrally efficient fiber-optical communication systems based on different spatially coupled (SC) forward error correction (FEC) schemes. In particular, we optimize the allocation of the coded bits from the FEC encoder to the modulation bits of the signal constellation. Two SC code classes are considered. The codes in the first class are protograph-based low-density parity-check (LDPC) codes which are decoded using iterative soft-decision decoding. The codes in the second class are generalized LDPC codes which are decoded using iterative hard-decision decoding. For both code classes, the bit allocation is optimized for the terminated and tailbiting SC cases based on a density evolution analysis. An optimized bit allocation can significantly improve the performance of tailbiting SC codes codes over the baseline sequential allocation, up to the point where they have a comparable gap to capacity as their terminated counterparts, at a lower FEC overhead. For the considered terminated SC co...

  4. Classification mapping and species identification of salt marshes based on a short-time interval NDVI time-series from HJ-1 optical imagery

    Science.gov (United States)

    Sun, Chao; Liu, Yongxue; Zhao, Saishuai; Zhou, Minxi; Yang, Yuhao; Li, Feixue

    2016-03-01

    Salt marshes are seen as the most dynamic and valuable ecosystems in coastal zones, and in these areas, it is crucial to obtain accurate remote sensing information on the spatial distributions of species over time. However, discriminating various types of salt marsh is rather difficult because of their strong spectral similarities. Previous salt marsh mapping studies have focused mainly on high spatial and spectral (i.e., hyperspectral) resolution images combined with auxiliary information; however, the results are often limited to small regions. With a high temporal and moderate spatial resolution, the Chinese HuanJing-1 (HJ-1) satellite optical imagery can be used not only to monitor phenological changes of salt marsh vegetation over short-time intervals, but also to obtain coverage of large areas. Here, we apply HJ-1 satellite imagery to the middle coast of Jiangsu in east China to monitor changes in saltmarsh vegetation cover. First, we constructed a monthly NDVI time-series to classify various types of salt marsh and then we tested the possibility of using compressed time-series continuously, to broaden the applicability of this particular approach. Our principal findings are as follows: (1) the overall accuracy of salt marsh mapping based on the monthly NDVI time-series was 90.3%, which was ∼16.0% higher than the single-phase classification strategy; (2) a compressed time-series, including NDVI from six key months (April, June-September, and November), demonstrated very little reduction (2.3%) in overall accuracy but led to obvious improvements in unstable regions; and (3) a simple rule for Spartina alterniflora identification was established using a scene solely from November, which may provide an effective way for regularly monitoring its distribution.

  5. Multimodality Molecular Imaging of Cardiac Cell Transplantation: Part I. Reporter Gene Design, Characterization, and Optical in Vivo Imaging of Bone Marrow Stromal Cells after Myocardial Infarction.

    Science.gov (United States)

    Parashurama, Natesh; Ahn, Byeong-Cheol; Ziv, Keren; Ito, Ken; Paulmurugan, Ramasamy; Willmann, Jürgen K; Chung, Jaehoon; Ikeno, Fumiaki; Swanson, Julia C; Merk, Denis R; Lyons, Jennifer K; Yerushalmi, David; Teramoto, Tomohiko; Kosuge, Hisanori; Dao, Catherine N; Ray, Pritha; Patel, Manishkumar; Chang, Ya-Fang; Mahmoudi, Morteza; Cohen, Jeff Eric; Goldstone, Andrew Brooks; Habte, Frezghi; Bhaumik, Srabani; Yaghoubi, Shahriar; Robbins, Robert C; Dash, Rajesh; Yang, Phillip C; Brinton, Todd J; Yock, Paul G; McConnell, Michael V; Gambhir, Sanjiv S

    2016-09-01

    Purpose To use multimodality reporter-gene imaging to assess the serial survival of marrow stromal cells (MSC) after therapy for myocardial infarction (MI) and to determine if the requisite preclinical imaging end point was met prior to a follow-up large-animal MSC imaging study. Materials and Methods Animal studies were approved by the Institutional Administrative Panel on Laboratory Animal Care. Mice (n = 19) that had experienced MI were injected with bone marrow-derived MSC that expressed a multimodality triple fusion (TF) reporter gene. The TF reporter gene (fluc2-egfp-sr39ttk) consisted of a human promoter, ubiquitin, driving firefly luciferase 2 (fluc2), enhanced green fluorescent protein (egfp), and the sr39tk positron emission tomography reporter gene. Serial bioluminescence imaging of MSC-TF and ex vivo luciferase assays were performed. Correlations were analyzed with the Pearson product-moment correlation, and serial imaging results were analyzed with a mixed-effects regression model. Results Analysis of the MSC-TF after cardiac cell therapy showed significantly lower signal on days 8 and 14 than on day 2 (P = .011 and P = .001, respectively). MSC-TF with MI demonstrated significantly higher signal than MSC-TF without MI at days 4, 8, and 14 (P = .016). Ex vivo luciferase activity assay confirmed the presence of MSC-TF on days 8 and 14 after MI. Conclusion Multimodality reporter-gene imaging was successfully used to assess serial MSC survival after therapy for MI, and it was determined that the requisite preclinical imaging end point, 14 days of MSC survival, was met prior to a follow-up large-animal MSC study. (©) RSNA, 2016 Online supplemental material is available for this article.

  6. Choroidal thickness maps from spectral domain and swept source optical coherence tomography: algorithmic versus ground truth annotation.

    Science.gov (United States)

    Philip, Ana-Maria; Gerendas, Bianca S; Zhang, Li; Faatz, Henrik; Podkowinski, Dominika; Bogunovic, Hrvoje; Abramoff, Michael D; Hagmann, Michael; Leitner, Roland; Simader, Christian; Sonka, Milan; Waldstein, Sebastian M; Schmidt-Erfurth, Ursula

    2016-10-01

    The purpose of the study was to create a standardised protocol for choroidal thickness measurements and to determine whether choroidal thickness measurements made on images obtained by spectral domain optical coherence tomography (SD-OCT) and swept source (SS-) OCT from patients with healthy retina are interchangeable when performed manually or with an automatic algorithm. 36 grid cell measurements for choroidal thickness for each volumetric scan were obtained, which were measured for SD-OCT and SS-OCT with two methods on 18 eyes of healthy volunteers. Manual segmentation by experienced retinal graders from the Vienna Reading Center and automated segmentation on >6300 images of the choroid from both devices were statistically compared. Model-based comparison between SD-OCT/SS-OCT showed a systematic difference in choroidal thickness of 16.26±0.725 μm (pthickness of -0.68±0.513 μm (p=0.1833). The correlation coefficients for SD-OCT and SS-OCT measures within eyes were 0.975 for manual segmentation and 0.955 for automatic segmentation. Choroidal thickness measurements of SD-OCT and SS-OCT indicate that these two devices are interchangeable with a trend of choroidal thickness measurements being slightly thicker on SD-OCT with limited clinical relevance. Use of an automated algorithm to segment choroidal thickness was validated in healthy volunteers. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

  7. What Is Cardiac Rehabilitation?

    Science.gov (United States)

    ANSWERS by heart Treatments + Tests What Is Cardiac Rehabilitation? A cardiac rehabilitation (rehab) program takes place in a hospital or ... special help in making lifestyle changes. During your rehabilitation program you’ll… • Have a medical evaluation to ...

  8. Cardiac tamponade (image)

    Science.gov (United States)

    Cardiac tamponade is a condition involving compression of the heart caused by blood or fluid accumulation in the space ... they cannot adequately fill or pump blood. Cardiac tamponade is an emergency condition that requires hospitalization.

  9. Cardiac Procedures and Surgeries

    Science.gov (United States)

    ... Procedure Learn more about cardiac medications , including dual antiplatelet therapy, that you may need to take after your ... Procedure Learn more about cardiac medications , including dual antiplatelet therapy, that you may need to take after your ...

  10. Method and system for processing optical elements using magnetorheological finishing

    Science.gov (United States)

    Menapace, Joseph Arthur; Schaffers, Kathleen Irene; Bayramian, Andrew James; Molander, William A

    2012-09-18

    A method of finishing an optical element includes mounting the optical element in an optical mount having a plurality of fiducials overlapping with the optical element and obtaining a first metrology map for the optical element and the plurality of fiducials. The method also includes obtaining a second metrology map for the optical element without the plurality of fiducials, forming a difference map between the first metrology map and the second metrology map, and aligning the first metrology map and the second metrology map. The method further includes placing mathematical fiducials onto the second metrology map using the difference map to form a third metrology map and associating the third metrology map to the optical element. Moreover, the method includes mounting the optical element in the fixture in an MRF tool, positioning the optical element in the fixture; removing the plurality of fiducials, and finishing the optical element.

  11. Aortic and Cardiac Structure and Function Using High-Resolution Echocardiography and Optical Coherence Tomography in a Mouse Model of Marfan Syndrome

    Science.gov (United States)

    Lee, Ling; Cui, Jason Z.; Cua, Michelle; Esfandiarei, Mitra; Sheng, Xiaoye; Chui, Winsey Audrey; Xu, Michael Haoying; Sarunic, Marinko V.; Beg, Mirza Faisal; van Breemen, Cornelius; Sandor, George G. S.

    2016-01-01

    Marfan syndrome (MFS) is an autosomal-dominant disorder of connective tissue caused by mutations in the fibrillin-1 (FBN1) gene. Mortality is often due to aortic dissection and rupture. We investigated the structural and functional properties of the heart and aorta in a [Fbn1C1039G/+] MFS mouse using high-resolution ultrasound (echo) and optical coherence tomography (OCT). Echo was performed on 6- and 12-month old wild type (WT) and MFS mice (n = 8). In vivo pulse wave velocity (PWV), aortic root diameter, ejection fraction, stroke volume, left ventricular (LV) wall thickness, LV mass and mitral valve early and atrial velocities (E/A) ratio were measured by high resolution echocardiography. OCT was performed on 12-month old WT and MFS fixed mouse hearts to measure ventricular volume and mass. The PWV was significantly increased in 6-mo MFS vs. WT (366.6 ± 19.9 vs. 205.2 ± 18.1 cm/s; p = 0.003) and 12-mo MFS vs. WT (459.5 ± 42.3 vs. 205.3 ± 30.3 cm/s; pMarfan patients including significant aortic dilation, central aortic stiffness, LV systolic and diastolic dysfunction. This is the first demonstration of the direct measurement in vivo of pulse wave velocity non-invasively in the aortic arch of MFS mice, a robust measure of aortic stiffness and a critical clinical parameter for the assessment of pathology in the Marfan syndrome. PMID:27824871

  12. Cardiac sodium channelopathies

    NARCIS (Netherlands)

    Amin, A.S.; Asghari-Roodsari, A.; Tan, H.L.

    2010-01-01

    Cardiac sodium channel are protein complexes that are expressed in the sarcolemma of cardiomyocytes to carry a large inward depolarizing current (I-Na) during phase 0 of the cardiac action potential. The importance of I-Na for normal cardiac electrical activity is reflected by the high incidence of

  13. Cardiac sodium channelopathies

    NARCIS (Netherlands)

    Amin, A.S.; Asghari-Roodsari, A.; Tan, H.L.

    2010-01-01

    Cardiac sodium channel are protein complexes that are expressed in the sarcolemma of cardiomyocytes to carry a large inward depolarizing current (I-Na) during phase 0 of the cardiac action potential. The importance of I-Na for normal cardiac electrical activity is reflected by the high incidence of

  14. Mechanisms of cardiac pain.

    Science.gov (United States)

    Foreman, Robert D; Garrett, Kennon M; Blair, Robert W

    2015-04-01

    Angina pectoris is cardiac pain that typically is manifested as referred pain to the chest and upper left arm. Atypical pain to describe localization of the perception, generally experienced more by women, is referred to the back, neck, and/or jaw. This article summarizes the neurophysiological and pharmacological mechanisms for referred cardiac pain. Spinal cardiac afferent fibers mediate typical anginal pain via pathways from the spinal cord to the thalamus and ultimately cerebral cortex. Spinal neurotransmission involves substance P, glutamate, and transient receptor potential vanilloid-1 (TRPV1) receptors; release of neurokinins such as nuclear factor kappa b (NF-kb) in the spinal cord can modulate neurotransmission. Vagal cardiac afferent fibers likely mediate atypical anginal pain and contribute to cardiac ischemia without accompanying pain via relays through the nucleus of the solitary tract and the C1-C2 spinal segments. The psychological state of an individual can modulate cardiac nociception via pathways involving the amygdala. Descending pathways originating from nucleus raphe magnus and the pons also can modulate cardiac nociception. Sensory input from other visceral organs can mimic cardiac pain due to convergence of this input with cardiac input onto spinothalamic tract neurons. Reduction of converging nociceptive input from the gallbladder and gastrointestinal tract can diminish cardiac pain. Much work remains to be performed to discern the interactions among complex neural pathways that ultimately produce or do not produce the sensations associated with cardiac pain.

  15. Optical monitoring of Disinfection By-product Precursors with Fluorescence Excitation-Emission Mapping (F-EEM): Practical Application Issues for Drinking, Waste and Reuse Water Industry

    Science.gov (United States)

    Gilmore, A. M.

    2012-12-01

    Drinking water, wastewater and reuse plants must deal with regulations associated with bacterial contamination and halogen disinfection procedures that can generate harmful disinfection by-products (DBPs) including trihalomethanes (THMs), haloacetic acids (HOAAs) and other compounds. The natural fluorescent chromophoric dissolved organic matter (CDOM) is regulated as the major DBP precursor. This study outlines the advantages and current limitations associated with optical monitoring of water treatment processes using tcontemporary Fluorescence Excitation-Emission Mapping (F-EEM). The F-EEM method coupled with practical peak indexing and multi-variate analyses is potentially superior in terms of cost, speed and sensitivity over conventional total organic carbon (TOC) meters and specific UV-absorbance (SUVA) measurements. Hence there is strong interest in developing revised environmental regulations around the F-EEM technique instruments which can incidentally simultaneously measure the SUVA and DOC parameters. Importantly, the F-EEM technique, compared to the single-point TOC and SUVA signals can resolve CDOM classes distinguishing those that strongly cause DBPs. The F-EEM DBP prediction method can be applied to surface water sources to evaluate DBP potential as a function of the point sources and reservoir depth profiles. It can also be applied in-line to rapidly adjust DOC removal processes including sedimentation-flocculation, microfiltration, reverse-osmosis, and ozonation. Limitations and interferences for F-EEMs are discussed including those common to SUVA and TOC in contrast to the advantages including that F-EEMs are less prone to interferences from inorganic carbon and metal contaminations and require little if any chemical preparation. In conclusion, the F-EEM method is discussed in terms of not only the DBP problem but also as a means of predicting (concurrent to DBP monitoring) organic membrane fouling in water-reuse and desalination plants.

  16. Hα Intensity Map of the Repeating Fast Radio Burst FRB 121102 Host Galaxy from Subaru/Kyoto 3DII AO-assisted Optical Integral-field Spectroscopy

    Science.gov (United States)

    Kokubo, Mitsuru; Mitsuda, Kazuma; Sugai, Hajime; Ozaki, Shinobu; Minowa, Yosuke; Hattori, Takashi; Hayano, Yutaka; Matsubayashi, Kazuya; Shimono, Atsushi; Sako, Shigeyuki; Doi, Mamoru

    2017-08-01

    We present the Hα intensity map of the host galaxy of the repeating fast radio burst FRB 121102 at a redshift of z = 0.193 obtained with the AO-assisted Kyoto 3DII optical integral-field unit mounted on the 8.2 m Subaru Telescope. We detected a compact Hα-emitting (i.e., star-forming) region in the galaxy, which has a much smaller angular size (GMOS z\\prime -band image (≃ 1\\buildrel{\\prime\\prime}\\over{.} 4 (4.6 kpc) at FWHM with ellipticity b/a=0.45). The spatial offset between the centroid of the Hα emission region and the position of the radio bursts is 0\\buildrel{\\prime\\prime}\\over{.} 08+/- 0\\buildrel{\\prime\\prime}\\over{.} 02 (0.26 ± 0.07 kpc), indicating that FRB 121102 is located within the star-forming region. This close spatial association of FRB 121102 with the star-forming region is consistent with expectations from young pulsar/magnetar models for FRB 121102, and it also suggests that the observed Hα emission region can make a major dispersion measure (DM) contribution to the host galaxy DM component of FRB 121102. Nevertheless, the largest possible value of the DM contribution from the Hα emission region inferred from our observations still requires a significant amount of ionized baryons in intergalactic medium (IGM; the so-called “missing” baryons) as the DM source of FRB 121102, and we obtain a 90% confidence level lower limit on the cosmic baryon density in the IGM in the low-redshift universe as {{{Ω }}}{IGM}> 0.012. Based on data collected at Subaru Telescope, which is operated by the National Astronomical Observatory of Japan.

  17. Optical mapping reveals developmental dynamics of Mg2+-/APV-sensitive components of glossopharyngeal glutamatergic EPSPs in the embryonic chick NTS.

    Science.gov (United States)

    Sato, Katsushige; Momose-Sato, Yoko

    2004-10-01

    To examine whether there are any differences in functional organization between the glossopharyngeal nerve (N. IX)- and vagus nerve (N. X)-projecting areas in the nucleus of the tractus solitarius (NTS), we performed optical recording of neural responses evoked by N. IX stimulation in 5- to 9-day-old embryonic chick brain stem preparations and compared the results with those in our previous studies concerning the N. X-related NTS. First, we investigated DL-2-amino-5-phosphonovaleric acid (APV)/Mg2+ sensitivity of the glutamatergic excitatory postsynaptic potentials (EPSPs) in the N. IX-related NTS. In 7- to 9-day-old preparations, we found regional differences in the degree of both the APV-induced reduction and Mg2+-free-induced enhancement of the EPSPs. We constructed developmental maps of spatial patterns of the APV- and Mg2+-sensitive components and showed that functional expression of the N-methyl-D-aspartate (NMDA) receptor dynamically changed during development. Second, we studied initial expression of synaptic functions in the N. IX-related NTS. In 6-day-old preparations, although action potentials alone were usually detected in normal Ringer solution, small EPSPs were elicited in a Mg2+-free solution. This result suggests that the NMDA receptor-mediated synaptic function is latently generated in the N. IX-related NTS at the 6-day-old embryonic stage and that external Mg2+ regulates the onset of synaptic functions. Developmental patterns of APV/Mg2+ sensitivity and the stage of initial expression of the glossopharyngeal EPSP were similar to those of the N. X, suggesting that the developmental sequence of the synaptic function in the NTS is the same for the N. IX- and N. X-related NTS.

  18. Determining the light scattering and absorption parameters from forward-directed flux measurements in cardiac tissue.

    Science.gov (United States)

    Costantino, Anthony J; Hyatt, Christopher J; Kollisch-Singule, Michaela C; Beaumont, Jacques; Roth, Bradley J; Pertsov, Arkady M

    2017-07-01

    We describe a method to accurately measure the light scattering model parameters from forward-directed flux (FDF) measurements carried out with a fiber-optic probe (optrode). Improved determination of light scattering parameters will, in turn, permit better modeling and interpretation of optical mapping in the heart using voltage-sensitive dyes. Using our optrode-based system, we carried out high spatial resolution measurements of FDF in intact and homogenized cardiac tissue, as well as in intralipid-based tissue phantoms. The samples were illuminated with a broad collimated beam at 660 and 532 nm. Measurements were performed with a plunge fiber-optic probe (NA=0.22) at a spatial resolution of up to 10  μm. In the vicinity of the illuminated surface, the FDF consistently manifested a fast decaying exponent with a space constant comparable with the decay rate of ballistic photons. Using a Monte Carlo model, we obtained a simple empirical formula linking the rate of the fast exponent to the scattering coefficient, the anisotropy parameter g, and the numerical aperture of the probe. The estimates of scattering coefficient based on this formula were validated in tissue phantoms. Potential applications of optical fiber-based FDF measurements for the evaluation of optical parameters in turbid media are discussed.

  19. Cardiac tumours in children

    Directory of Open Access Journals (Sweden)

    Parsons Jonathan M

    2007-03-01

    Full Text Available Abstract Cardiac tumours are benign or malignant neoplasms arising primarily in the inner lining, muscle layer, or the surrounding pericardium of the heart. They can be primary or metastatic. Primary cardiac tumours are rare in paediatric practice with a prevalence of 0.0017 to 0.28 in autopsy series. In contrast, the incidence of cardiac tumours during foetal life has been reported to be approximately 0.14%. The vast majority of primary cardiac tumours in children are benign, whilst approximately 10% are malignant. Secondary malignant tumours are 10–20 times more prevalent than primary malignant tumours. Rhabdomyoma is the most common cardiac tumour during foetal life and childhood. It accounts for more than 60% of all primary cardiac tumours. The frequency and type of cardiac tumours in adults differ from those in children with 75% being benign and 25% being malignant. Myxomas are the most common primary tumours in adults constituting 40% of benign tumours. Sarcomas make up 75% of malignant cardiac masses. Echocardiography, Computing Tomography (CT and Magnetic Resonance Imaging (MRI of the heart are the main non-invasive diagnostic tools. Cardiac catheterisation is seldom necessary. Tumour biopsy with histological assessment remains the gold standard for confirmation of the diagnosis. Surgical resection of primary cardiac tumours should be considered to relieve symptoms and mechanical obstruction to blood flow. The outcome of surgical resection in symptomatic, non-myxomatous benign cardiac tumours is favourable. Patients with primary cardiac malignancies may benefit from palliative surgery but this approach should not be recommended for patients with metastatic cardiac tumours. Surgery, chemotherapy and radiotherapy may prolong survival. The prognosis for malignant primary cardiac tumours is generally extremely poor.

  20. CRED Optical Validation Data at the island of Ofu and Olosega in American Samoa, 2006 to support Benthic Habitat Mapping (TOAD)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a Tethered Optical Assessment Device (TOAD), an underwater sled equipped with an underwater digital video camera and...

  1. CRED Optical Validation Data at the island of Ofu and Olosega in American Samoa, 2012 to support Benthic Habitat Mapping (TOAD)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using the Tethered Optical Assessment Device (TOAD), a sled equipped with underwater video camera, still camera and lights....

  2. CRED Optical Validation Data at the islands of Ofu and Olosega in American Samoa, 2004 to Support Benthic Habitat Mapping (TOAD)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a Tethered Optical Assessment Device (TOAD), an underwater sled equipped with an underwater digital video camera and...

  3. CRED Optical Validation Data at the island of Ta'u in American Samoa, 2006 to support Benthic Habitat Mapping (TOAD)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Optical validation data were collected using a Tethered Optical Assessment Device (TOAD), an underwater sled equipped with an underwater digital video camera and...

  4. Probing myocardium biomechanics using quantitative optical coherence elastography

    Science.gov (United States)

    Wang, Shang; Lopez, Andrew L.; Morikawa, Yuka; Tao, Ge; Li, Jiasong; Larina, Irina V.; Martin, James F.; Larin, Kirill V.

    2015-03-01

    We present a quantitative optical coherence elastographic method for noncontact assessment of the myocardium elasticity. The method is based on shear wave imaging optical coherence tomography (SWI-OCT), where a focused air-puff system is used to induce localized tissue deformation through a low-pressure short-duration air stream and a phase-sensitive OCT system is utilized to monitor the propagation of the induced tissue displacement with nanoscale sensitivity. The 1-D scanning of M-mode OCT imaging and the application of optical phase retrieval and mapping techniques enable the reconstruction and visualization of 2-D depth-resolved shear wave propagation in tissue with ultra-high frame rate. The feasibility of this method in quantitative elasticity measurement is demonstrated on tissue-mimicking phantoms with the estimated Young's modulus compared with uniaxial compression tests. We also performed pilot experiments on ex vivo mouse cardiac muscle tissues with normal and genetically altered cardiomyocytes. Our results indicate this noncontact quantitative optical coherence elastographic method can be a useful tool for the cardiac muscle research and studies.

  5. Stimulating endogenous cardiac regeneration

    Directory of Open Access Journals (Sweden)

    Amanda eFinan

    2015-09-01

    Full Text Available The healthy adult heart has a low turnover of cardiac myocytes. The renewal capacity, however, is augmented after cardiac injury. Participants in cardiac regeneration include cardiac myocytes themselves, cardiac progenitor cells, and peripheral stem cells, particularly from the bone marrow compartment. Cardiac progenitor cells and bone marrow stem cells are augmented after cardiac injury, migrate to the myocardium, and support regeneration. Depletion studies of these populations have demonstrated their necessary role in cardiac repair. However, the potential of these cells to completely regenerate the heart is limited. Efforts are now being focused on ways to augment these natural pathways to improve cardiac healing, primarily after ischemic injury but in other cardiac pathologies as well. Cell and gene therapy or pharmacological interventions are proposed mechanisms. Cell therapy has demonstrated modest results and has passed into clinical trials. However, the beneficial effects of cell therapy have primarily been their ability to produce paracrine effects on the cardiac tissue and recruit endogenous stem cell populations as opposed to direct cardiac regeneration. Gene therapy efforts have focused on prolonging or reactivating natural signaling pathways. Positive results have been demonstrated to activate the endogenous stem cell populations and are currently being tested in clinical trials. A potential new avenue may be to refine pharmacological treatments that are currently in place in the clinic. Evidence is mounting that drugs such as statins or beta blockers may alter endogenous stem cell activity. Understanding the effects of these drugs on stem cell repair while keeping in mind their primary function may strike a balance in myocardial healing. To maximize endogenous cardiac regeneration,a combination of these approaches couldameliorate the overall repair process to incorporate the participation ofmultiple cell players.

  6. Cardiac sodium channelopathies.

    Science.gov (United States)

    Amin, Ahmad S; Asghari-Roodsari, Alaleh; Tan, Hanno L

    2010-07-01

    Cardiac sodium channel are protein complexes that are expressed in the sarcolemma of cardiomyocytes to carry a large inward depolarizing current (INa) during phase 0 of the cardiac action potential. The importance of INa for normal cardiac electrical activity is reflected by the high incidence of arrhythmias in cardiac sodium channelopathies, i.e., arrhythmogenic diseases in patients with mutations in SCN5A, the gene responsible for the pore-forming ion-conducting alpha-subunit, or in genes that encode the ancillary beta-subunits or regulatory proteins of the cardiac sodium channel. While clinical and genetic studies have laid the foundation for our understanding of cardiac sodium channelopathies by establishing links between arrhythmogenic diseases and mutations in genes that encode various subunits of the cardiac sodium channel, biophysical studies (particularly in heterologous expression systems and transgenic mouse models) have provided insights into the mechanisms by which INa dysfunction causes disease in such channelopathies. It is now recognized that mutations that increase INa delay cardiac repolarization, prolong action potential duration, and cause long QT syndrome, while mutations that reduce INa decrease cardiac excitability, reduce electrical conduction velocity, and induce Brugada syndrome, progressive cardiac conduction disease, sick sinus syndrome, or combinations thereof. Recently, mutation-induced INa dysfunction was also linked to dilated cardiomyopathy, atrial fibrillation, and sudden infant death syndrome. This review describes the structure and function of the cardiac sodium channel and its various subunits, summarizes major cardiac sodium channelopathies and the current knowledge concerning their genetic background and underlying molecular mechanisms, and discusses recent advances in the discovery of mutation-specific therapies in the management of these channelopathies.

  7. Marketing cardiac CT programs.

    Science.gov (United States)

    Scott, Jason

    2010-01-01

    There are two components of cardiac CT discussed in this article: coronary artery calcium scoring (CACS) and coronary computed tomography angiography (CCTA).The distinctive advantages of each CT examination are outlined. In order to ensure a successful cardiac CT program, it is imperative that imaging facilities market their cardiac CT practices effectively in order to gain a competitive advantage in this valuable market share. If patients receive quality care by competent individuals, they are more likely to recommend the facility's cardiac CT program. Satisfied patients will also be more willing to come back for any further testing.

  8. Cardiac event monitors

    Science.gov (United States)

    ... ECG) - ambulatory; Continuous electrocardiograms (EKGs); Holter monitors; Transtelephonic event monitors ... attached. You can carry or wear a cardiac event monitor up to 30 days. You carry the ...

  9. Cardiac stem cell niches

    Directory of Open Access Journals (Sweden)

    Annarosa Leri

    2014-11-01

    Full Text Available The critical role that stem cell niches have in cardiac homeostasis and myocardial repair following injury is the focus of this review. Cardiac niches represent specialized microdomains where the quiescent and activated state of resident stem cells is regulated. Alterations in niche function with aging and cardiac diseases result in abnormal sites of cardiomyogenesis and inadequate myocyte formation. The relevance of Notch1 signaling, gap-junction formation, HIF-1α and metabolic state in the regulation of stem cell growth and differentiation within the cardiac niches are discussed.

  10. Evaluation of optical flow algorithms for tracking endocardial surfaces on three-dimensional ultrasound data

    Science.gov (United States)

    Duan, Qi; Angelini, Elsa D.; Herz, Susan L.; Ingrassia, Christopher M.; Gerard, Olivier; Costa, Kevin D.; Holmes, Jeffrey W.; Laine, Andrew F.

    2005-04-01

    With relatively high frame rates and the ability to acquire volume data sets with a stationary transducer, 3D ultrasound systems, based on matrix phased array transducers, provide valuable three-dimensional information, from which quantitative measures of cardiac function can be extracted. Such analyses require segmentation and visual tracking of the left ventricular endocardial border. Due to the large size of the volumetric data sets, manual tracing of the endocardial border is tedious and impractical for clinical applications. Therefore the development of automatic methods for tracking three-dimensional endocardial motion is essential. In this study, we evaluate a four-dimensional optical flow motion tracking algorithm to determine its capability to follow the endocardial border in three dimensional ultrasound data through time. The four-dimensional optical flow method was implemented using three-dimensional correlation. We tested the algorithm on an experimental open-chest dog data set and a clinical data set acquired with a Philips' iE33 three-dimensional ultrasound machine. Initialized with left ventricular endocardial data points obtained from manual tracing at end-diastole, the algorithm automatically tracked these points frame by frame through the whole cardiac cycle. A finite element surface was fitted through the data points obtained by both optical flow tracking and manual tracing by an experienced observer for quantitative comparison of the results. Parameterization of the finite element surfaces was performed and maps displaying relative differences between the manual and semi-automatic methods were compared. The results showed good consistency between manual tracing and optical flow estimation on 73% of the entire surface with fewer than 10% difference. In addition, the optical flow motion tracking algorithm greatly reduced processing time (about 94% reduction compared to human involvement per cardiac cycle) for analyzing cardiac function in three

  11. Functional Doppler optical coherence tomography for cortical blood flow imaging

    Science.gov (United States)

    Yu, Lingfeng; Liu, Gangjun; Nguyen, Elaine; Choi, Bernard; Chen, Zhongping

    2010-02-01

    Optical methods have been widely used in basic neuroscience research to study the cerebral blood flow dynamics in order to overcome the low spatial resolution associated with magnetic resonance imaging and positron emission tomography. Although laser Doppler imaging and laser speckle imaging can map out en face cortical hemodynamics and columns, depth resolution is not available. Two-photon microscopy has been used for mapping cortical activity. However, flow measurement requires fluorescent dye injection, which can be problematic. The noninvasive and high resolution tomographic capabilities of optical coherence tomography make it a promising technique for mapping depth resolved cortical blood flow. Here, we present a functional Doppler optical coherence tomography (OCT) imaging modality for quantitative evaluation of cortical blood flow in a mouse model. Fast, repeated, Doppler OCT scans across a vessel of interest were performed to record flow dynamic information with a high temporal resolution of the cardiac cycles. Spectral Doppler analysis of continuous Doppler images demonstrates how the velocity components and longitudinally projected flow-volume-rate change over time, thereby providing complementary temporal flow information to the spatially distributed flow information of Doppler OCT. The proposed functional Doppler OCT imaging modality can be used to diagnose vessel stenosis/blockage or monitor blood flow changes due to pharmacological agents/neuronal activities. Non-invasive in-vivo mice experiments were performed to verify the capabilities of function Doppler OCT.

  12. Reproducibility of area at risk assessment in acute myocardial infarction by T1- and T2-mapping sequences in cardiac magnetic resonance imaging in comparison to Tc99m-sestamibi SPECT.

    Science.gov (United States)

    Langhans, Birgit; Nadjiri, Jonathan; Jähnichen, Christin; Kastrati, Adnan; Martinoff, Stefan; Hadamitzky, Martin

    2014-10-01

    Area at risk (AAR) is an important parameter for the assessment of the salvage area after revascularization in acute myocardial infarction (AMI). By combining AAR assessment by T2-weighted imaging and scar quantification by late gadolinium enhancement imaging cardiovascular magnetic resonance (CMR) offers a promising alternative to the "classical" modality of Tc99m-sestamibi single photon emission tomography (SPECT). Current T2 weighted sequences for edema imaging in CMR are limited by low contrast to noise ratios and motion artifacts. During the last years novel CMR imaging techniques for quantification of acute myocardial injury, particularly the T1-mapping and T2-mapping, have attracted rising attention. But no direct comparison between the different sequences in the setting of AMI or a validation against SPECT has been reported so far. We analyzed 14 patients undergoing primary coronary revascularization in AMI in whom both a pre-intervention Tc99m-sestamibi-SPECT and CMR imaging at a median of 3.4 (interquartile range 3.3-3.6) days after the acute event were performed. Size of AAR was measured by three different non-contrast CMR techniques on corresponding short axis slices: T2-weighted, fat-suppressed turbospin echo sequence (TSE), T2-mapping from T2-prepared balanced steady state free precession sequences (T2-MAP) and T1-mapping from modified look locker inversion recovery (MOLLI) sequences. For each CMR sequence, the AAR was quantified by appropriate methods (absolute values for mapping sequences, comparison with remote myocardium for other sequences) and correlated with Tc99m-sestamibi-SPECT. All measurements were performed on a 1.5 Tesla scanner. The size of the AAR assessed by CMR was 28.7 ± 20.9 % of left ventricular myocardial volume (%LV) for TSE, 45.8 ± 16.6 %LV for T2-MAP, and 40.1 ± 14.4 %LV for MOLLI. AAR assessed by SPECT measured 41.6 ± 20.7 %LV. Correlation analysis revealed best correlation with SPECT for T2-MAP at a T2-threshold of 60 ms

  13. A Novel Alpha Cardiac Actin (ACTC1) Mutation Mapping to a Domain in Close Contact with Myosin Heavy Chain Leads to a Variety of Congenital Heart Defects, Arrhythmia and Possibly Midline Defects

    Science.gov (United States)

    Augière, Céline; Mégy, Simon; El Malti, Rajae; Boland, Anne; El Zein, Loubna; Verrier, Bernard; Mégarbané, André; Deleuze, Jean-François; Bouvagnet, Patrice

    2015-01-01

    Background A Lebanese Maronite family presented with 13 relatives affected by various congenital heart defects (mainly atrial septal defects), conduction tissue anomalies and midline defects. No mutations were found in GATA4 and NKX2-5. Methods and Results A set of 399 poly(AC) markers was used to perform a linkage analysis which peaked at a 2.98 lod score on the long arm of chromosome 15. The haplotype analysis delineated a 7.7 meganucleotides genomic interval which included the alpha-cardiac actin gene (ACTC1) among 36 other protein coding genes. A heterozygous missense mutation was found (c.251T>C, p.(Met84Thr)) in the ACTC1 gene which changed a methionine residue conserved up to yeast. This mutation was absent from 1000 genomes and exome variant server database but segregated perfectly in this family with the affection status. This mutation and 2 other ACTC1 mutations (p.(Glu101Lys) and p.(Met125Val)) which result also in congenital heart defects are located in a region in close apposition to a myosin heavy chain head region by contrast to 3 other alpha-cardiac actin mutations (p.(Ala297Ser),p.(Asp313His) and p.(Arg314His)) which result in diverse cardiomyopathies and are located in a totally different interaction surface. Conclusions Alpha-cardiac actin mutations lead to congenital heart defects, cardiomyopathies and eventually midline defects. The consequence of an ACTC1 mutation may in part be dependent on the interaction surface between actin and myosin. PMID:26061005

  14. Anion channelrhodopsins for inhibitory cardiac optogenetics

    Science.gov (United States)

    Govorunova, Elena G.; Cunha, Shane R.; Sineshchekov, Oleg A.; Spudich, John L.

    2016-01-01

    Optical control of the heart muscle is a promising strategy for cardiology because it is more specific than traditional electrical stimulation, and allows a higher temporal resolution than pharmacological interventions. Anion channelrhodopsins (ACRs) from cryptophyte algae expressed in cultured neonatal rat ventricular cardiomyocytes produced inhibitory currents at less than one-thousandth of the light intensity required by previously available optogenetic tools, such as the proton pump archaerhodopsin-3 (Arch). Because of their greater photocurrents, ACRs permitted complete inhibition of cardiomyocyte electrical activity under conditions in which Arch was inefficient. Most importantly, ACR expression allowed precisely controlled shortening of the action potential duration by switching on the light during its repolarization phase, which was not possible with previously used optogenetic tools. Optical shortening of cardiac action potentials may benefit pathophysiology research and the development of optogenetic treatments for cardiac disorders such as the long QT syndrome. PMID:27628215

  15. [Advances in cardiac pacing].

    Science.gov (United States)

    de Carranza, María-José Sancho-Tello; Fidalgo-Andrés, María Luisa; Ferrer, José Martínez; Mateas, Francisco Ruiz

    2012-01-01

    This article contains a review of the current status of remote monitoring and follow-up involving cardiac pacing devices and of the latest developments in cardiac resynchronization therapy. In addition, the most important articles published in the last year are discussed.

  16. Mathematical cardiac electrophysiology

    CERN Document Server

    Colli Franzone, Piero; Scacchi, Simone

    2014-01-01

    This book covers the main mathematical and numerical models in computational electrocardiology, ranging from microscopic membrane models of cardiac ionic channels to macroscopic bidomain, monodomain, eikonal models and cardiac source representations. These advanced multiscale and nonlinear models describe the cardiac bioelectrical activity from the cell level to the body surface and are employed in both the direct and inverse problems of electrocardiology. The book also covers advanced numerical techniques needed to efficiently carry out large-scale cardiac simulations, including time and space discretizations, decoupling and operator splitting techniques, parallel finite element solvers. These techniques are employed in 3D cardiac simulations illustrating the excitation mechanisms, the anisotropic effects on excitation and repolarization wavefronts, the morphology of electrograms in normal and pathological tissue and some reentry phenomena. The overall aim of the book is to present rigorously the mathematica...

  17. Biomaterials for cardiac regeneration

    CERN Document Server

    Ruel, Marc

    2015-01-01

    This book offers readers a comprehensive biomaterials-based approach to achieving clinically successful, functionally integrated vasculogenesis and myogenesis in the heart. Coverage is multidisciplinary, including the role of extracellular matrices in cardiac development, whole-heart tissue engineering, imaging the mechanisms and effects of biomaterial-based cardiac regeneration, and autologous bioengineered heart valves. Bringing current knowledge together into a single volume, this book provides a compendium to students and new researchers in the field and constitutes a platform to allow for future developments and collaborative approaches in biomaterials-based regenerative medicine, even beyond cardiac applications. This book also: Provides a valuable overview of the engineering of biomaterials for cardiac regeneration, including coverage of combined biomaterials and stem cells, as well as extracellular matrices Presents readers with multidisciplinary coverage of biomaterials for cardiac repair, including ...

  18. Sudden cardiac death

    Directory of Open Access Journals (Sweden)

    Neeraj Parakh

    2015-01-01

    Full Text Available Sudden cardiac death is one of the most common cause of mortality worldwide. Despite significant advances in the medical science, there is little improvement in the sudden cardiac death related mortality. Coronary artery disease is the most common etiology behind sudden cardiac death, in the above 40 years population. Even in the apparently healthy population, there is a small percentage of patients dying from sudden cardiac death. Given the large denominator, this small percentage contributes to the largest burden of sudden cardiac death. Identification of this at risk group among the apparently healthy individual is a great challenge for the medical fraternity. This article looks into the causes and methods of preventing SCD and at some of the Indian data. Details of Brugada syndrome, Long QT syndrome, Genetics of SCD are discussed. Recent guidelines on many of these causes are summarised.

  19. A new autosomal recessive non-progressive congenital cerebellar ataxia associated with mental retardation, optic atrophy, and skin abnormalities (CAMOS) maps to chromosome 15q24-q26 in a large consanguineous Lebanese Druze Family.

    Science.gov (United States)

    Delague, Valérie; Bareil, Corinne; Bouvagnet, Patrice; Salem, Nabiha; Chouery, Eliane; Loiselet, Jacques; Mégarbané, André; Claustres, Mireille

    2002-03-01

    Congenital cerebellar ataxias are a heterogeneous group of non-progressive disorders characterized by hypotonia and developmental delay followed by the appearance of ataxia, and often associated with dysarthria, mental retardation, and atrophy of the cerebellum. We report the mapping of a disease gene in a large inbred Lebanese Druze family, with five cases of a new form of non-progressive autosomal recessive congenital ataxia associated with optic atrophy, severe mental retardation, and structural skin abnormalities, to a 3.6-cM interval on chromosome 15q24-15q26.

  20. Variable Sampling Mapping

    Science.gov (United States)

    Smith, Jeffrey, S.; Aronstein, David L.; Dean, Bruce H.; Lyon, Richard G.

    2012-01-01

    The performance of an optical system (for example, a telescope) is limited by the misalignments and manufacturing imperfections of the optical elements in the system. The impact of these misalignments and imperfections can be quantified by the phase variations imparted on light traveling through the system. Phase retrieval is a methodology for determining these variations. Phase retrieval uses images taken with the optical system and using a light source of known shape and characteristics. Unlike interferometric methods, which require an optical reference for comparison, and unlike Shack-Hartmann wavefront sensors that require special optical hardware at the optical system's exit pupil, phase retrieval is an in situ, image-based method for determining the phase variations of light at the system s exit pupil. Phase retrieval can be used both as an optical metrology tool (during fabrication of optical surfaces and assembly of optical systems) and as a sensor used in active, closed-loop control of an optical system, to optimize performance. One class of phase-retrieval algorithms is the iterative transform algorithm (ITA). ITAs estimate the phase variations by iteratively enforcing known constraints in the exit pupil and at the detector, determined from modeled or measured data. The Variable Sampling Mapping (VSM) technique is a new method for enforcing these constraints in ITAs. VSM is an open framework for addressing a wide range of issues that have previously been considered detrimental to high-accuracy phase retrieval, including undersampled images, broadband illumination, images taken at or near best focus, chromatic aberrations, jitter or vibration of the optical system or detector, and dead or noisy detector pixels. The VSM is a model-to-data mapping procedure. In VSM, fully sampled electric fields at multiple wavelengths are modeled inside the phase-retrieval algorithm, and then these fields are mapped to intensities on the light detector, using the properties

  1. Cardiac tumors: echo assessment.

    Science.gov (United States)

    Mankad, Rekha; Herrmann, Joerg

    2016-12-01

    Cardiac tumors are exceedingly rare (0.001-0.03% in most autopsy series). They can be present anywhere within the heart and can be attached to any surface or be embedded in the myocardium or pericardial space. Signs and symptoms are nonspecific and highly variable related to the localization, size and composition of the cardiac mass. Echocardiography, typically performed for another indication, may be the first imaging modality alerting the clinician to the presence of a cardiac mass. Although echocardiography cannot give the histopathology, certain imaging features and adjunctive tools such as contrast imaging may aid in the differential diagnosis as do the adjunctive clinical data and the following principles: (1) thrombus or vegetations are the most likely etiology, (2) cardiac tumors are mostly secondary and (3) primary cardiac tumors are mostly benign. Although the finding of a cardiac mass on echocardiography may generate confusion, a stepwise approach may serve well practically. Herein, we will review such an approach and the role of echocardiography in the assessment of cardiac masses.

  2. Cardiac tumors: echo assessment

    Directory of Open Access Journals (Sweden)

    Rekha Mankad MD

    2016-12-01

    Full Text Available Cardiac tumors are exceedingly rare (0.001–0.03% in most autopsy series. They can be present anywhere within the heart and can be attached to any surface or be embedded in the myocardium or pericardial space. Signs and symptoms are nonspecific and highly variable related to the localization, size and composition of the cardiac mass. Echocardiography, typically performed for another indication, may be the first imaging modality alerting the clinician to the presence of a cardiac mass. Although echocardiography cannot give the histopathology, certain imaging features and adjunctive tools such as contrast imaging may aid in the differential diagnosis as do the adjunctive clinical data and the following principles: (1 thrombus or vegetations are the most likely etiology, (2 cardiac tumors are mostly secondary and (3 primary cardiac tumors are mostly benign. Although the finding of a cardiac mass on echocardiography may generate confusion, a stepwise approach may serve well practically. Herein, we will review such an approach and the role of echocardiography in the assessment of cardiac masses.

  3. Cardiac Tamponade Revisited

    Science.gov (United States)

    Ariyarajah, Vignendra; Spodick, David H.

    2007-01-01

    Cardiac tamponade is a life-threatening clinical syndrome that requires timely diagnosis. Herein, we present an instructive case of a patient who had cardiac tamponade. The condition went undiagnosed and resulted in the patient's death because almost all of the pathognomonic clinical findings of tamponade were unrecognized or not manifest. To better prepare health care professionals for similar challenges, we discuss the symptoms and clinical signs typical of cardiac tamponade, review the medical literature, and highlight current investigative methods that enable quick, efficient diagnosis and treatment. PMID:17948086

  4. Simultaneous mapping of membrane voltage and calcium in zebrafish heart in vivo reveals chamber-specific developmental transitions in ionic currents

    Directory of Open Access Journals (Sweden)

    Jennifer H Hou

    2014-09-01

    Full Text Available The cardiac action potential (AP and the consequent cytosolic Ca2+ transient are key indicators of cardiac function. Natural developmental processes, as well as many drugs and pathologies change the waveform, propagation, or variability (between cells or over time of these parameters. Here we apply a genetically encoded dual-function calcium and voltage reporter (CaViar to study the development of the zebrafish heart in vivo between 1.5 and 4 days post fertilization (dpf. We developed a high-sensitivity spinning disk confocal microscope and associated software for simultaneous three-dimensional optical mapping of voltage and calcium. We produced a transgenic zebrafish line expressing CaViar under control of the heart-specific cmlc2 promoter, and applied ion channel blockers at a series of developmental stages to map the maturation of the action potential in vivo. Early in development, the AP initiated via a calcium current through L-type calcium channels. Between 90 – 102 hours post fertilization (hpf, the ventricular AP switched to a sodium-driven upswing, while the atrial AP remained calcium driven. In the adult zebrafish heart, a sodium current drives the AP in both the atrium and ventricle. Simultaneous voltage and calcium imaging with genetically encoded reporters provides a new approach for monitoring cardiac development, and the effects of drugs on cardiac function.

  5. Mapping Land Cover and Land Use Changes in the Congo Basin Forests with Optical Satellite Remote Sensing: a Pilot Project Exploring Methodologies that Improve Spatial Resolution and Map Accuracy

    Science.gov (United States)

    Molinario, G.; Baraldi, A.; Altstatt, A. L.; Nackoney, J.

    2011-12-01

    The University of Maryland has been a USAID Central Africa Rregional Program for the Environment (CARPE) cross-cutting partner for many years, providing remote sensing derived information on forest cover and forest cover changes in support of CARPE's objectives of diminishing forest degradation, loss and biodiversity loss as a result of poor or inexistent land use planning strategies. Together with South Dakota State University, Congo Basin-wide maps have been provided that map forest cover loss at a maximum of 60m resolution, using Landsat imagery and higher resolution imagery for algorithm training and validation. However, to better meet the needs within the CARPE Landscapes, which call for higher resolution, more accurate land cover change maps, UMD has been exploring the use of the SIAM automatic spectral -rule classifier together with pan-sharpened Landsat data (15m resolution) and Very High Resolution imagery from various sources. The pilot project is being developed in collaboration with the African Wildlife Foundation in the Maringa Lopori Wamba CARPE Landscape. If successful in the future this methodology will make the creation of high resolution change maps faster and easier, making it accessible to other entities in the Congo Basin that need accurate land cover and land use change maps in order, for example, to create sustainable land use plans, conserve biodiversity and resources and prepare Reducing Emissions from forest Degradation and Deforestation (REDD) Measurement, Reporting and Verification (MRV) projects. The paper describes the need for higher resolution land cover change maps that focus on forest change dynamics such as the cycling between primary forests, secondary forest, agriculture and other expanding and intensifying land uses in the Maringa Lopori Wamba CARPE Landscape in the Equateur Province of the Democratic Republic of Congo. The Methodology uses the SIAM remote sensing imagery automatic spectral rule classifier, together with pan

  6. Molecular Basis of Cardiac Myxomas

    Directory of Open Access Journals (Sweden)

    Pooja Singhal

    2014-01-01

    Full Text Available Cardiac tumors are rare, and of these, primary cardiac tumors are even rarer. Metastatic cardiac tumors are about 100 times more common than the primary tumors. About 90% of primary cardiac tumors are benign, and of these the most common are cardiac myxomas. Approximately 12% of primary cardiac tumors are completely asymptomatic while others present with one or more signs and symptoms of the classical triad of hemodynamic changes due to intracardiac obstruction, embolism and nonspecific constitutional symptoms. Echocardiography is highly sensitive and specific in detecting cardiac tumors. Other helpful investigations are chest X-rays, magnetic resonance imaging and computerized tomography scan. Surgical excision is the treatment of choice for primary cardiac tumors and is usually associated with a good prognosis. This review article will focus on the general features of benign cardiac tumors with an emphasis on cardiac myxomas and their molecular basis.

  7. Optics/Optical Diagnostics Laboratory

    Data.gov (United States)

    Federal Laboratory Consortium — The Optics/Optical Diagnostics Laboratory supports graduate instruction in optics, optical and laser diagnostics and electro-optics. The optics laboratory provides...

  8. Acoustic mapping velocimetry

    Science.gov (United States)

    Muste, M.; Baranya, S.; Tsubaki, R.; Kim, D.; Ho, H.; Tsai, H.; Law, D.

    2016-05-01

    Knowledge of sediment dynamics in rivers is of great importance for various practical purposes. Despite its high relevance in riverine environment processes, the monitoring of sediment rates remains a major and challenging task for both suspended and bed load estimation. While the measurement of suspended load is currently an active area of testing with nonintrusive technologies (optical and acoustic), bed load measurement does not mark a similar progress. This paper describes an innovative combination of measurement techniques and analysis protocols that establishes the proof-of-concept for a promising technique, labeled herein Acoustic Mapping Velocimetry (AMV). The technique estimates bed load rates in rivers developing bed forms using a nonintrusive measurements approach. The raw information for AMV is collected with acoustic multibeam technology that in turn provides maps of the bathymetry over longitudinal swaths. As long as the acoustic maps can be acquired relatively quickly and the repetition rate for the mapping is commensurate with the movement of the bed forms, successive acoustic maps capture the progression of the bed form movement. Two-dimensional velocity maps associated with the bed form migration are obtained by implementing algorithms typically used in particle image velocimetry to acoustic maps converted in gray-level images. Furthermore, use of the obtained acoustic and velocity maps in conjunction with analytical formulations (e.g., Exner equation) enables estimation of multidirectional bed load rates over the whole imaged area. This paper presents a validation study of the AMV technique using a set of laboratory experiments.

  9. Cardiac Tumors; Tumeurs cardiaques

    Energy Technology Data Exchange (ETDEWEB)

    Laissy, J.P.; Fernandez, P. [Centre Hospitalier Universitaire Bichat Claude Bernard, Service d' Imagerie, 76 - Rouen (France); Mousseaux, E. [Hopital Europeen Georges Pompidou (HEGP), Service de Radiologie Cardio Vasculaire et Interventionnelle, 75 - Paris (France); Dacher, J.N. [Centre Hospitalier Universitaire Charles Nicolle, 75 - Rouen (France); Crochet, D. [Centre Hospitalier Universitaire, Hopital Laennec, Centre Hemodynamique, Radiologie Thoracique et Vasculaire, 44 - Nantes (France)

    2004-04-01

    Metastases are the most frequent tumors of the heart even though they seldom are recognized. Most primary cardiac tumors are benign. The main role of imaging is to differentiate a cardiac tumor from thrombus and rare pseudo-tumors: tuberculoma, hydatid cyst. Echocardiography is the fist line imaging technique to detect cardiac tumors, but CT and MRl arc useful for further characterization and differential diagnosis. Myxoma of the left atrium is the most frequent benign cardiac tumor. It usually is pedunculated and sometimes calcified. Sarcoma is the most frequent primary malignant tumor and usually presents as a sessile infiltrative tumor. Lymphoma and metastases are usually recognized by the presence of known tumor elsewhere of by characteristic direct contiguous involvement. Diagnosing primary and secondary pericardial tumors often is difficult. Imaging is valuable for diagnosis, characterization, pre-surgical evaluation and follow-up. (author)

  10. Socially differentiated cardiac rehabilitation

    DEFF Research Database (Denmark)

    Meillier, Lucette Kirsten; Nielsen, Kirsten Melgaard; Larsen, Finn Breinholt;

    2012-01-01

    to a standard rehabilitation programme (SRP). If patients were identified as socially vulnerable, they were offered an extended version of the rehabilitation programme (ERP). Excluded patients were offered home visits by a cardiac nurse. Concordance principles were used in the individualised programme elements......%. Patients were equally distributed to the SRP and the ERP. No inequality was found in attendance and adherence among referred patients. Conclusions: It seems possible to overcome unequal referral, attendance, and adherence in cardiac rehabilitation by organisation of systematic screening and social......Aim: The comprehensive cardiac rehabilitation (CR) programme after myocardial infarction (MI) improves quality of life and results in reduced cardiac mortality and recurrence of MI. Hospitals worldwide face problems with low participation rates in rehabilitation programmes. Inequality...

  11. Transvenous Temporary Cardiac Pacing

    National Research Council Canada - National Science Library

    Emmanouil Poulidakis; Antonis S Manolis

    2014-01-01

      Transvenous temporary cardiac pacing is a rather old but still contemporary life-saving technique, with a unique value in the treatment of critically ill patients suffering from rhythm disturbances...

  12. Two models of anisotropic propagation of a cardiac excitation wave

    Science.gov (United States)

    Erofeev, I. S.; Agladze, K. I.

    2014-11-01

    Propagation of the action potential in the real heart is direction-dependent (anisotropic). We propose two general physical models explaining this anisotropy on the cellular level. The first, "delay" model takes into account the frequency of the cell-cell transitions in different directions of propagation, assuming each transition requires some small time interval. The second model relies on the assumption that the action potential transmits to the next cell only from the area at the pole of the previous cell. We estimated parameters of both models by doing optical mapping and fluorescent staining of cardiac cell samples grown on polymer fiber substrate. Both models gave reasonable estimations, but predicted different behaviors of the anisotropy ratio (ratio of the highest and lowest wave velocities) after addition of the suppressor of sodium channels such as lidocaine. The results of the experiment on lidocaine effect on anisotropy ratio were in favor of the first, "delay" model. Estimated average cell-cell transition delay was 240 ± 80 μs, which is close to the characteristic values of synaptic delay.

  13. Cardiac arrest - cardiopulmonary resuscitation

    Institute of Scientific and Technical Information of China (English)

    Basri Lenjani; Besnik Elshani; Nehat Baftiu; Kelmend Pallaska; Kadir Hyseni; Njazi Gashi; Nexhbedin Karemani; Ilaz Bunjaku; Taxhidin Zaimi; Arianit Jakupi

    2014-01-01

    Objective:To investigate application of cardiopulmonary resuscitation(CPR) measures within the golden minutes inEurope.Methods:The material was taken from theUniversityClinical Center ofKosovo -EmergencyCentre inPristina, during the two(2) year period(2010-2011).The collected date belong to the patients with cardiac arrest have been recorded in the patients' log book protocol at the emergency clinic.Results:During the2010 to2011 in the emergency center of theCUCK inPristina have been treated a total of269 patients with cardiac arrest, of whom159 or59.1% have been treated in2010, and110 patients or40.9% in2011.Of the269 patients treated in the emergency centre,93 or34.6% have exited lethally in the emergency centre, and176 or 65.4% have been transferred to other clinics.In the total number of patients with cardiac arrest, males have dominated with186 cases, or69.1%.The average age of patients included in the survey was56.7 year oldSD±16.0 years.Of the269 patients with cardiac arrest, defibrillation has been applied for93 or34.6% of patients.In the outpatient settings defibrillation has been applied for3 or3.2% of patients.Patients were defibrillated with application of one to four shocks. Of27 cases with who have survived cardiac arrest, none of them have suffered cardiac arrest at home,3 or11.1% of them have suffered cardiac arrest on the street, and24 or88.9% of them have suffered cardiac arrest in the hospital.5 out of27 patients survived have ended with neurological impairment.Cardiac arrest cases were present during all days of the week, but frequently most reported cases have been onMonday with32.0% of cases, and onFriday with24.5% of cases. Conclusions:All survivors from cardiac arrest have received appropriate medical assistance within10 min from attack, which implies that if cardiac arrest occurs near an institution health care(with an opportunity to provide the emergent health care) the rate of survival is higher.

  14. Genetic Mapping

    Science.gov (United States)

    ... Fact Sheets Fact Sheets En Español: Mapeo Genético Genetic Mapping What is genetic mapping? How do researchers create ... genetic map? What are genetic markers? What is genetic mapping? Among the main goals of the Human Genome ...

  15. Cardiac imaging in adults

    Energy Technology Data Exchange (ETDEWEB)

    Jaffe, C.C.

    1987-01-01

    This book approaches adult cardiac disease from the correlative imaging perspective. It includes chest X-rays and angiographs, 2-dimensional echocardiograms with explanatory diagrams for clarity, plus details on digital radiology, nuclear medicine techniques, CT and MRI. It also covers the normal heart, valvular heart disease, myocardial disease, pericardial disease, bacterial endocarditis, aortic aneurysm, cardiac tumors, and congenital heart disease of the adult. It points out those aspects where one imaging technique has significant superiority.

  16. Autonomic cardiac innervation

    OpenAIRE

    Hasan, Wohaib

    2013-01-01

    Autonomic cardiac neurons have a common origin in the neural crest but undergo distinct developmental differentiation as they mature toward their adult phenotype. Progenitor cells respond to repulsive cues during migration, followed by differentiation cues from paracrine sources that promote neurochemistry and differentiation. When autonomic axons start to innervate cardiac tissue, neurotrophic factors from vascular tissue are essential for maintenance of neurons before they reach their targe...

  17. Port Access Cardiac Surgery.

    Science.gov (United States)

    Viganó, Mario; Minzioni, Gaetano; Spreafico, Patrizio; Rinaldi, Mauro; Pasquino, Stefano; Ceriana, Piero; Locatelli, Alessandro

    2000-10-01

    The port-access technique for cardiac surgery was recently developed at Stanford University in California as a less invasive method to perform some cardiac operations. The port-access system has been described in detail elsewhere. It is based on femoral arterial and venous access for cardiopulmonary bypass (CPB) and on the adoption of a specially designed triple-lumen catheter described originally by Peters, and subsequently modified and developed in the definitive configuration called the endoaortic clamp.

  18. Awareness in cardiac anesthesia.

    LENUS (Irish Health Repository)

    Serfontein, Leon

    2010-02-01

    Cardiac surgery represents a sub-group of patients at significantly increased risk of intraoperative awareness. Relatively few recent publications have targeted the topic of awareness in this group. The aim of this review is to identify areas of awareness research that may equally be extrapolated to cardiac anesthesia in the attempt to increase understanding of the nature and significance of this scenario and how to reduce it.

  19. Post cardiac injury syndrome

    DEFF Research Database (Denmark)

    Nielsen, S L; Nielsen, F E

    1991-01-01

    The post-pericardiotomy syndrome is a symptom complex which is similar in many respects to the post-myocardial infarction syndrome and these are summarized under the diagnosis of the Post Cardiac Injury Syndrome (PCIS). This condition, which is observed most frequently after open heart surgery, i...... on the coronary vessels, with cardiac tamponade and chronic pericardial exudate. In the lighter cases, PCIS may be treated with NSAID and, in the more severe cases, with systemic glucocorticoid which has a prompt effect....

  20. Infected cardiac hydatid cyst

    OpenAIRE

    Ceviz, M; Becit, N; Kocak, H.

    2001-01-01

    A 24 year old woman presented with chest pain and palpitation. The presence of a semisolid mass—an echinococcal cyst or tumour—in the left ventricular apex was diagnosed by echocardiography, computed tomography, and magnetic resonance imaging. The infected cyst was seen at surgery. The cyst was removed successfully by using cardiopulmonary bypass with cross clamp.


Keywords: cardiac hydatid cyst; infected cardiac hydatid cyst

  1. Depth Attenuation Degree Based Visualization for Cardiac Ischemic Electrophysiological Feature Exploration

    Science.gov (United States)

    Liu, Lei; Zuo, Wangmeng; Zhang, Henggui

    2016-01-01

    Although heart researches and acquirement of clinical and experimental data are progressively open to public use, cardiac biophysical functions are still not well understood. Due to the complex and fine structures of the heart, cardiac electrophysiological features of interest may be occluded when there is a necessity to demonstrate cardiac electrophysiological behaviors. To investigate cardiac abnormal electrophysiological features under the pathological condition, in this paper, we implement a human cardiac ischemic model and acquire the electrophysiological data of excitation propagation. A visualization framework is then proposed which integrates a novel depth weighted optic attenuation model into the pathological electrophysiological model. The hidden feature of interest in pathological tissue can be revealed from sophisticated overlapping biophysical information. Experiment results verify the effectiveness of the proposed method for intuitively exploring and inspecting cardiac electrophysiological activities, which is fundamental in analyzing and explaining biophysical mechanisms of cardiac functions for doctors and medical staff. PMID:28004002

  2. Advancing the quantification of humid tropical forest cover loss with multi-resolution optical remote sensing data: Sampling & wall-to-wall mapping

    Science.gov (United States)

    Broich, Mark

    Humid tropical forest cover loss is threatening the sustainability of ecosystem goods and services as vast forest areas are rapidly cleared for industrial scale agriculture and tree plantations. Despite the importance of humid tropical forest in the provision of ecosystem services and economic development opportunities, the spatial and temporal distribution of forest cover loss across large areas is not well quantified. Here I improve the quantification of humid tropical forest cover loss using two remote sensing-based methods: sampling and wall-to-wall mapping. In all of the presented studies, the integration of coarse spatial, high temporal resolution data with moderate spatial, low temporal resolution data enable advances in quantifying forest cover loss in the humid tropics. Imagery from the Moderate Resolution Imaging Spectroradiometer (MODIS) are used as the source of coarse spatial resolution, high temporal resolution data and imagery from the Landsat Enhanced Thematic Mapper Plus (ETM+) sensor are used as the source of moderate spatial, low temporal resolution data. In a first study, I compare the precision of different sampling designs for the Brazilian Amazon using the annual deforestation maps derived by the Brazilian Space Agency for reference. I show that sampling designs can provide reliable deforestation estimates; furthermore, sampling designs guided by MODIS data can provide more efficient estimates than the systematic design used for the United Nations Food and Agricultural Organization Forest Resource Assessment 2010. Sampling approaches, such as the one demonstrated, are viable in regions where data limitations, such as cloud contamination, limit exhaustive mapping methods. Cloud-contaminated regions experiencing high rates of change include Insular Southeast Asia, specifically Indonesia and Malaysia. Due to persistent cloud cover, forest cover loss in Indonesia has only been mapped at a 5-10 year interval using photo interpretation of single

  3. Concept Maps

    OpenAIRE

    Schwendimann, Beat Adrian

    2014-01-01

    A concept map is a node-link diagram showing the semantic relationships among concepts. The technique for constructing concept maps is called "concept mapping". A concept map consists of nodes, arrows as linking lines, and linking phrases that describe the relationship between nodes. Two nodes connected with a labeled arrow are called a proposition. Concept maps are versatile graphic organizers that can represent many different forms of relationships between concepts. The relationship between...

  4. Azimuthally invariant Mueller-matrix mapping of optically anisotropic layers of biological networks of blood plasma in the diagnosis of liver disease

    Science.gov (United States)

    Ushenko, A. G.; Dubolazov, A. V.; Ushenko, V. A.; Ushenko, Yu. A.; Sakhnovskiy, M. Y.; Pavlyukovich, O.; Pavlyukovich, N.; Novakovskaya, O.; Gorsky, M. P.

    2016-09-01

    The model of Mueller-matrix description of mechanisms of optical anisotropy that typical for polycrystalline layers of the histological sections of biological tissues and fluids - optical activity, birefringence, as well as linear and circular dichroism - is suggested. Within the statistical analysis distributions quantities of linear and circular birefringence and dichroism the objective criteria of differentiation of myocardium histological sections (determining the cause of death); films of blood plasma (liver pathology); peritoneal fluid (endometriosis of tissues of women reproductive sphere); urine (kidney disease) were determined. From the point of view of probative medicine the operational characteristics (sensitivity, specificity and accuracy) of the method of Mueller-matrix reconstruction of optical anisotropy parameters were found.

  5. Space Telescope and Optical Reverberation Mapping Project.I. Ultraviolet Observations of the Seyfert 1 Galaxy NGC 5548 with the Cosmic Origins Spectrograph on Hubble Space Telescope

    NARCIS (Netherlands)

    De Rosa, G.; Peterson, B.M.; Ely, J.; Kriss, G.A.; Crenshaw, D.M.; Horne, K.; Korista, K.T.; Netzer, H.; Pogge, R.W.; Arévalo, P.; Barth, A.J.; Bentz, M.C.; Brandt, W.N.; Breeveld, A.A.; Brewer, B.J.; Dalla Bontà, E.; De Lorenzo-Cáceres, A.; Denney, K.D.; Dietrich, M.; Edelson, R.; Evans, P.A.; Fausnaugh, M.M.; Gehrels, N.; Gelbord, J.M.; Goad, M.R.; Grier, C.J.; Grupe, D.; Hall, P.B.; Kaastra, J.; Kelly, B.C.; Kennea, J.A.; Kochanek, C.S.; Lira, P.; Mathur, S.; McHardy, I.M.; Nousek, J.A.; Pancoast, A.; Papadakis, I.; Pei, L.; Schimoia, J.S.; Siegel, M.; Starkey, D.; Treu, T.; Uttley, P.; Vaughan, S.; Vestergaard, M.; Villforth, C.; Yan, H.; Young, S.; Zu, Y.

    2015-01-01

    We describe the first results from a six-month long reverberation-mapping experiment in the ultraviolet based on 171 observations of the Seyfert 1 galaxy NGC 5548 with the Cosmic Origins Spectrograph on the Hubble Space Telescope. Significant correlated variability is found in the continuum and

  6. Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.

    Science.gov (United States)

    Mariano, Diego César Batista; Sousa, Thiago de Jesus; Pereira, Felipe Luiz; Aburjaile, Flávia; Barh, Debmalya; Rocha, Flávia; Pinto, Anne Cybelle; Hassan, Syed Shah; Saraiva, Tessália Diniz Luerce; Dorella, Fernanda Alves; de Carvalho, Alex Fiorini; Leal, Carlos Augusto Gomes; Figueiredo, Henrique César Pereira; Silva, Artur; Ramos, Rommel Thiago Jucá; Azevedo, Vasco Ariston Carvalho

    2016-04-30

    Studies have detected mis-assemblies in genomes of the species Corynebacterium pseudotuberculosis. These new discover have been possible due to the evolution of the Next-Generation Sequencing platforms, which have provided sequencing with accuracy and reduced costs. In addition, the improving of techniques for construction of high accuracy genomic maps, for example, Whole-genome mapping (WGM) (OpGen Inc), have allow high-resolution assembly that can detect large rearrangements. In this work, we present the resequencing of Corynebacterium pseudotuberculosis strain 1002 (Cp1002). Cp1002 was the first strain of this species sequenced in Brazil, and its genome has been used as model for several studies in silico of caseous lymphadenitis disease. The sequencing was performed using the platform Ion PGM and fragment library (200 bp kit). A restriction map was constructed, using the technique of WGM with the enzyme KpnI. After the new assembly process, using WGM as scaffolder, we detected a large inversion with size bigger than one-half of genome. A specific analysis using BLAST and NR database shows that the inversion occurs between two homology RNA ribosomal regions. In conclusion, the results showed by WGM could be used to detect mismatches in assemblies, providing genomic maps with high resolution and allow assemblies with more accuracy and completeness. The new assembly of C. pseudotuberculosis was deposited in GenBank under the accession no. CP012837.

  7. Ativação elétrica ventricular na ressincronização cardíaca caracterizada pelo mapeamento eletrocardiográfico de superfície Ventricular electrical activation in cardiac resynchronization as characterized by body surface potential mapping

    Directory of Open Access Journals (Sweden)

    Carlos Alberto Pastore

    2007-03-01

    Full Text Available OBJETIVOS: Avaliar a ativação elétrica cardíaca usando Mapeamento Eletrocardiográfico de Superfície (MES, em pacientes com ICC e bloqueio de ramo esquerdo [BRE] submetidos a terapia de ressincronização cardíaca (CRT com implante de marca-passo átrio-biventricular (MP-BIV. MÉTODOS: Foram analisados os tempos médios de ativação elétrica cardíaca no ventrículo direito (tempo médio de ativação do VD [mVD], área ântero-septal (mAS, e ventrículo esquerdo (mVE, de 28 pacientes (idade média 61,2±9,5 anos, ICC classe III-IV NYHA, fração de ejeção OBJECTIVES: To assess cardiac electrical activation by using body surface potential mapping (BSPM, in patients with congestive heart failure (CHF and left bundle branch block (LBBB undergoing cardiac resynchronization therapy (CRT with biventricular pacemaker (BIV-PM implantation. METHODS: Mean cardiac electrical activation times were analyzed in the right ventricle (RV (mean RV activation time = mRV, anteroseptal area (mAS, and left ventricle (mLV of 28 patients (mean age 61.2 ± 9.5 years; NYHA class III-IV CHF; ejection fraction <40%; LBBB of mean QRS 181.2±19.4ms, SÂQRS -8.5º±68.6º, as shown in their BSPM isochronous maps, before and after implantation of atriobiventricular pacemaker, comparing those with values obtained from a control group of normal individuals [CG], in three situations: (1 native LBBB; (2 RV pacing; and (3 atriobiventricular pacing. RESULTS: Situation (1: mRV and mAS values were similar (41.0±11.8ms x 43.6±13.4ms, with delayed mLV (81.0±12.5ms, p<0.01 and asynchronous with RV and AS areas; situation (2: mRV was greater than in CG (86.8±22.9ms, p<0.001, with greater difference between mAS and mLV (63.4±20.7ms vs. 102.7±20.3ms; p<0,001; situation (3: mLV and mRV were similar (72.0±32.0ms vs. 71.6±32.3ms, mRV was greater than in CG and native LBBB (71.6±32.3ms vs. 35.1±10.9ms and 41.0±11.8ms; p<0.001, and mAS was close to CG and native LBBB values

  8. [Psychosomatic aspects of cardiac arrhythmias].

    Science.gov (United States)

    Siepmann, Martin; Kirch, Wilhelm

    2010-07-01

    Emotional stress facilitates the occurrence of cardiac arrhythmias including sudden cardiac death. The prevalence of anxiety and depression is increased in cardiac patients as compared to the normal population. The risk of cardiovascular mortality is enhanced in patients suffering from depression. Comorbid anxiety disorders worsen the course of cardiac arrhythmias. Disturbance of neurocardiac regulation with predominance of the sympathetic tone is hypothesized to be causative for this. The emotional reaction to cardiac arrhythmias is differing to a large extent between individuals. Emotional stress may result from coping with treatment of cardiac arrhythmias. Emotional stress and cardiac arrhythmias may influence each other in the sense of a vicious circle. Somatoform cardiac arrhythmias are predominantly of psychogenic origin. Instrumental measures and frequent contacts between physicians and patients may facilitate disease chronification. The present review is dealing with the multifaceted relationships between cardiac arrhythmias and emotional stress. The underlying mechanisms and corresponding treatment modalities are discussed.

  9. Gap junction remodeling and cardiac arrhythmogenesis in a murine model of oculodentodigital dysplasia.

    Science.gov (United States)

    Kalcheva, Nellie; Qu, Jiaxiang; Sandeep, Nefthi; Garcia, Luis; Zhang, Jie; Wang, Zhiyong; Lampe, Paul D; Suadicani, Sylvia O; Spray, David C; Fishman, Glenn I

    2007-12-18

    Gap junction channels are required for normal cardiac impulse propagation, and gap junction remodeling is associated with enhanced arrhythmic risk. Oculodentodigital dysplasia (ODDD) is a multisystem syndrome due to mutations in the connexin43 (Cx43) gap junction channel gene. To determine the effects of a human connexin channelopathy on cardiac electrophysiology and arrhythmogenesis, we generated a murine model of ODDD by introducing the disease-causing I130T mutant allele into the mouse genome. Cx43 abundance was markedly reduced in mutant hearts with preferential loss of phosphorylated forms that interfered with trafficking and assembly of gap junctions in the junctional membrane. Dual whole-cell patch-clamp studies showed significantly lower junctional conductance between neonatal cell pairs from mutant hearts, and optical mapping of isolated-perfused hearts with voltage-sensitive dyes demonstrated significant slowing of conduction velocity. Programmed electrical stimulation revealed a markedly increased susceptibility to spontaneous and inducible ventricular tachyarrhythmias. In summary, our data demonstrate that the I130T mutation interferes with Cx43 posttranslational processing, resulting in diminished cell-cell coupling, slowing of impulse propagation, and a proarrhythmic substrate.

  10. 3D multifunctional integumentary membranes for spatiotemporal cardiac measurements and stimulation across the entire epicardium

    Science.gov (United States)

    Xu, Lizhi; Gutbrod, Sarah R.; Bonifas, Andrew P.; Su, Yewang; Sulkin, Matthew S.; Lu, Nanshu; Chung, Hyun-Joong; Jang, Kyung-In; Liu, Zhuangjian; Ying, Ming; Lu, Chi; Webb, R. Chad; Kim, Jong-Seon; Laughner, Jacob I.; Cheng, Huanyu; Liu, Yuhao; Ameen, Abid; Jeong, Jae-Woong; Kim, Gwang-Tae; Huang, Yonggang; Efimov, Igor R.; Rogers, John A.

    2014-02-01

    Means for high-density multiparametric physiological mapping and stimulation are critically important in both basic and clinical cardiology. Current conformal electronic systems are essentially 2D sheets, which cannot cover the full epicardial surface or maintain reliable contact for chronic use without sutures or adhesives. Here we create 3D elastic membranes shaped precisely to match the epicardium of the heart via the use of 3D printing, as a platform for deformable arrays of multifunctional sensors, electronic and optoelectronic components. Such integumentary devices completely envelop the heart, in a form-fitting manner, and possess inherent elasticity, providing a mechanically stable biotic/abiotic interface during normal cardiac cycles. Component examples range from actuators for electrical, thermal and optical stimulation, to sensors for pH, temperature and mechanical strain. The semiconductor materials include silicon, gallium arsenide and gallium nitride, co-integrated with metals, metal oxides and polymers, to provide these and other operational capabilities. Ex vivo physiological experiments demonstrate various functions and methodological possibilities for cardiac research and therapy.

  11. Manifold learning for shape guided segmentation of cardiac boundaries: application to 3D+t cardiac MRI.

    Science.gov (United States)

    Eslami, Abouzar; Yigitsoy, Mehmet; Navab, Nassir

    2011-01-01

    In this paper we propose a new method for shape guided segmentation of cardiac boundaries based on manifold learning of the shapes represented by the phase field approximation of the Mumford-Shah functional. A novel distance is defined to measure the similarity of shapes without requiring deformable registration. Cardiac motion is compensated and phases are mapped into one reference phase, that is the end of diastole, to avoid time warping and synchronization at all cardiac phases. Non-linear embedding of these 3D shapes extracts the manifold of the inter-subject variation of the heart shape to be used for guiding the segmentation for a new subject. For validation the method is applied to a comprehensive dataset of 3D+t cardiac Cine MRI from normal subjects and patients.

  12. 右心室造影结合CARTO标测指引射频导管消融法洛四联症术后室性心动过速%Radiofrequency catheter ablation of ventricular tachycardia guided by right ventriculography and CARTO electroanatomic mapping in patients after cardiac surgery for tetralogy of Fallot

    Institute of Scientific and Technical Information of China (English)

    梁延春; 王祖禄; 梁明; 韩雅玲

    2011-01-01

    AIM: To investigate the results of radiofrequency catheter ablation of ventricular tachycardia ( VT) guided by right ventriculography and CARTO electroanatomic mapping in patients after cardiar surgery for tetralogy of Fallot (TOF). METHODS; Included in the study were five patients (four males and one female, aged 6-38 years) who had palpitations and sustained VT for 2-16 years after cardiac surgery for TOF. Two patienls had a history ofsyncope. All patients had been ineffectively treated with antiarrhythmie drugs. No ICD was implanted. Right ventricular angiography and CARTO electroanatomic mapping system were used for directing mapping and ablating VT. First, right ventriculography was con-ducted to show right ventricle anatomy and to locate the pulmonary valve. For mappable VT, the VT mapping techniques included activation, entrainment and voltage mapping using standard criteria, and radiofrequency energy was delivered to the sites. For unmappable VT, the site of origin was approximated by the site of pace mapping that generated QRS complexes similar to those of VT. Radiofrequency ablation was performed as linear lesions based on the location of the best pace map, the location of valvular anatomic boundaries and the substrate defined by the voltage mapping. The sites with late potential or fragmented potential were also ablated. Irrigated RF energy was delivered to all patients. RESULTS; Six morphologies of VT (five sustained and one nonsustained VT) were induced in live patients, including two morphologies of VT induced in one patient. Only one with nonsustained VT could be induced in one patient. The cycle lengths of VT were 230 - 310 msec. In three patients, mapping and ablation were performed during VT. In another two patients, mapping was performed during sinus rhythm because of unmappable VT. All 6 VT were caused by scar-related reentry and were eliminated successfully in five patients. During 12 -30 months of follow-up, no VT recurred in the patients

  13. Cardiac abnormalities assessed by non-invasive techniques in patients with newly diagnosed idiopathic inflammatory myopathies

    DEFF Research Database (Denmark)

    Diederichsen, Louise Pyndt; Simonsen, Jane Angel; Diederichsen, Axel Cosmus Pyndt;

    2015-01-01

    , cardiac troponin-I (TnI), electrocardiogram (standard 12-lead and 48-h Holter monitoring), echocardiography with tissue Doppler measures, cardiac magnetic resonance (CMR) imaging with T2 mapping and semi-quantitative (99m)technetium pyrophosphate ((99m)Tc-PYP) scintigraphy. RESULTS: Dyspnoea was present....... The myocardial (99m)Tc-PYP uptake and CMR results differed between patients and controls, albeit not with statistical significance. Overall, cardiac abnormalities were demonstrated in 9 (64%) of the patients versus 2 (14%) of the controls (p=0.02). CONCLUSIONS: Cardiac abnormalities assessed by TnI, ECG...

  14. Conformal Mapping for Multiple Terminals

    CERN Document Server

    Wang, Weimin; Wang, Qiang; Ren, Hao

    2015-01-01

    Conformal mapping is an important mathematical tool in many physical and engineering fields, especially in electrostatics, fluid mechanics, classical mechanics, and transformation optics. However in the existing textbooks and literatures, it is only adopted to solve the problems which have only two terminals. Two terminals with electric potential differences, pressure difference, optical path difference, etc., can be mapped conformally onto a solvable structure, e.g., a rectangle, where the two terminals are mapped onto two opposite edges of the rectangle. Here we show a conformal mapping method for multiple terminals, which is more common in practical applications. Through accurate analysis of the boundary conditions, additional terminals or boundaries are folded in the inner of the mapped rectangle. Then the solution will not be influenced. The method is described in several typical situations and two application examples are detailed. The first example is an electrostatic actuator with three electrodes. A ...

  15. Direct and reflex cardiac bradydysrhythmias from small vagal nerve stiumaltions.

    Science.gov (United States)

    Hageman, G R; Randall, W C; Armour, J A

    1975-03-01

    Alterations in cardiac pacemaker location, its rate of discharge, and A-V conduction patterns were induced in anesthetized adult dogs by electrical stimulation of the thoracic vagi and their small cardiac branches before and after cervical vagotomy. Electrical activity from small, contiguous bipolar silver electrodes was amplified and recorded by an optical oscillograph. The electrodes were located over the SA node, the three internodal pathways, the left atrium, and ventricular epicardium. A hoffman-type plaque electrode was placed over the A-V node to record a His bundle electrogram simultaneously with a Lead II electrocardiogram. Electrical stimulation of the intact left recurrent laryngeal nerve and its cardiac branches before and after vagotomy induced both direct and reflex effects on SA nodal cycle length. Efferent dromotropic effects on the A-V node varied from first- to third-degree heart block during stimulation of individual left recurrent cardiac branches. Stimulation of the right recurrent cardiac nerve induced atrial bradycardia with heart block above the His bundle. Stimulation of individual right vagal branches near the heart induced bradycardia, cardiac asystole, shifts in atrial pacemaker location, or activation of His pacemakers. Establishment of the His rhythm probably indicates selective inhibition of supraventricular but not of the His bundle. Asystole and His rhythms induced during stimulation of the more caudal branches of the right cardiac vagal nerves were generally reflexly mediated and were abolished by cervical vagotomy.

  16. Cardiac radiology: centenary review.

    Science.gov (United States)

    de Roos, Albert; Higgins, Charles B

    2014-11-01

    During the past century, cardiac imaging technologies have revolutionized the diagnosis and treatment of acquired and congenital heart disease. Many important contributions to the field of cardiac imaging were initially reported in Radiology. The field developed from the early stages of cardiac imaging, including the use of coronary x-ray angiography and roentgen kymography, to nowadays the widely used echocardiographic, nuclear medicine, cardiac computed tomographic (CT), and magnetic resonance (MR) applications. It is surprising how many of these techniques were not recognized for their potential during their early inception. Some techniques were described in the literature but required many years to enter the clinical arena and presently continue to expand in terms of clinical application. The application of various CT and MR contrast agents for the diagnosis of myocardial ischemia is a case in point, as the utility of contrast agents continues to expand the noninvasive characterization of myocardium. The history of cardiac imaging has included a continuous process of advances in our understanding of the anatomy and physiology of the cardiovascular system, along with advances in imaging technology that continue to the present day.

  17. Optical Clocks in Space

    CERN Document Server

    Schiller, S; Nevsky, A; Koelemeij, J C J; Wicht, A; Gill, P; Klein, H A; Margolis, H S; Mileti, G; Sterr, U; Riehle, F; Peik, E; Tamm, C; Ertmer, W; Rasel, E; Klein, V; Salomon, C; Tino, G M; Lemonde, P; Holzwarth, R; Hänsch, T W; Tamm, Chr.

    2007-01-01

    The performance of optical clocks has strongly progressed in recent years, and accuracies and instabilities of 1 part in 10^18 are expected in the near future. The operation of optical clocks in space provides new scientific and technological opportunities. In particular, an earth-orbiting satellite containing an ensemble of optical clocks would allow a precision measurement of the gravitational redshift, navigation with improved precision, mapping of the earth's gravitational potential by relativistic geodesy, and comparisons between ground clocks.

  18. Comprehensive cardiac rehabilitation

    DEFF Research Database (Denmark)

    Kruse, Marie; Hochstrasser, Stefan; Zwisler, Ann-Dorthe O;

    2006-01-01

    OBJECTIVES: The costs of comprehensive cardiac rehabilitation are established and compared to the corresponding costs of usual care. The effect on health-related quality of life is analyzed. METHODS: An unprecedented and very detailed cost assessment was carried out, as no guidelines existed...... for the situation at hand. Due to challenging circumstances, the cost assessment turned out to be ex-post and top-down. RESULTS: Cost per treatment sequence is estimated to be approximately euro 976, whereas the incremental cost (compared with usual care) is approximately euro 682. The cost estimate is uncertain...... and may be as high as euro 1.877. CONCLUSIONS: Comprehensive cardiac rehabilitation is more costly than usual care, and the higher costs are not outweighed by a quality of life gain. Comprehensive cardiac rehabilitation is, therefore, not cost-effective....

  19. Pediatric cardiac postoperative care

    Directory of Open Access Journals (Sweden)

    Auler Jr. José Otávio Costa

    2002-01-01

    Full Text Available The Heart Institute of the University of São Paulo, Medical School is a referral center for the treatment of congenital heart diseases of neonates and infants. In the recent years, the excellent surgical results obtained in our institution may be in part due to modern anesthetic care and to postoperative care based on well-structured protocols. The purpose of this article is to review unique aspects of neonate cardiovascular physiology, the impact of extracorporeal circulation on postoperative evolution, and the prescription for pharmacological support of acute cardiac dysfunction based on our cardiac unit protocols. The main causes of low cardiac output after surgical correction of heart congenital disease are reviewed, and methods of treatment and support are proposed as derived from the relevant literature and our protocols.

  20. Toothache of cardiac origin.

    Science.gov (United States)

    Kreiner, M; Okeson, J P

    1999-01-01

    Pain referred to the orofacial structures can sometimes be a diagnostic challenge for the clinician. In some instances, a patient may complain of tooth pain that is completely unrelated to any dental source. This poses a diagnostic and therapeutic problem for the dentist. Cardiac pain most commonly radiates to the left arm, shoulder, neck, and face. In rare instances, angina pectoris may present as dental pain. When this occurs, an improper diagnosis frequently leads to unnecessary dental treatment or, more significantly, a delay of proper treatment. This delay may result in the patient experiencing an acute myocardial infarction. It is the dentist's responsibility to establish a proper diagnosis so that the treatment will be directed toward the source of pain and not to the site of pain. This article reviews the literature concerning referred pain of cardiac origin and presents a case report of toothache of cardiac origin.

  1. Gender-related differences in β-adrenergic receptor-mediated cardiac remodeling.

    Science.gov (United States)

    Zhu, Baoling; Liu, Kai; Yang, Chengzhi; Qiao, Yuhui; Li, Zijian

    2016-12-01

    Cardiac remodeling is the pathological basis of various cardiovascular diseases. In this study, we found gender-related differences in β-adrenergic receptor (AR)-mediated pathological cardiac remodeling. Cardiac remodeling model was established by subcutaneous injection of isoprenaline (ISO) for 14 days. Heart rate (HR), mean arterial pressure (MAP), and echocardiography were obtained on 7th and 14th days during ISO administration. Myocardial cross-sectional area and the ratio of heart mass to tibia length (HM/TL) were detected to assess cardiac hypertrophy. Picro-Sirius red staining (picric acid + Sirius red F3B) was used to evaluate cardiac fibrosis. Myocardial capillary density was assessed by immunohistochemistry for von Willebrand factor. Further, real-time PCR was used to measure the expression of β1-AR and β2-AR. Results showed that ISO induced cardiac remodeling, the extent of which was different between female and male mice. The extent of increase in cardiac wall thickness, myocardial cross-sectional area, and collagen deposition in females was less than that in males. However, no gender-related difference was observed in HR, MAP, cardiac function, and myocardial capillary density. The distinctive decrease of β2-AR expression, rather than a decrease of β1-AR expression, seemed to result in gender-related differences in cardiac remodeling.

  2. Cardiac tissue structure. Electric field interactions in polarizing the heart: 3D computer models and applications

    Science.gov (United States)

    Entcheva, Emilia

    1998-11-01

    The goal of this research is to investigate the interactions between the cardiac tissue structure and applied electric fields in producing complex polarization patterns. It is hypothesized that the response of the heart in the conditions of strong electric shocks, as those applied in defibrillation, is dominated by mechanisms involving the cardiac muscle structure perceived as a continuum. Analysis is carried out in three-dimensional models of the heart with detailed fiber architecture. Shock-induced transmembrane potentials are calculated using the bidomain model in its finite element implementation. The major new findings of this study can be summarized as follows: (1) The mechanisms of polarization due to cardiac fiber curvature and fiber rotation are elucidated in three-dimensional ellipsoidal hearts of variable geometry; (2) Results are presented showing that the axis of stimulation and the polarization axis on a whole heart level might differ significantly due to geometric and anisotropic factors; (3) Virtual electrode patterns are demonstrated numerically inside the ventricular wall in internal defibrillation conditions. The role of the tissue-bath interface in shaping the shock-induced polarization is revealed; (4) The generation of 3D phase singularity scrolls by shock-induced intramural virtual electrode patterns is proposed as evidence for a possible new mechanism for the failure to defibrillate. The results of this study emphasize the role of unequal anisotropy in the intra- and extracellular domains, as well as the salient fiber architecture characteristics, such as curvature and transmural rotation, in polarizing the myocardium. Experimental support of the above findings was actively sought and found in recent optical mapping studies using voltage-sensitive dyes. If validated in vivo, these findings would significantly enrich the prevailing concepts about the mechanisms of stimulation and defibrillation of the heart.

  3. The cardiac anxiety questionnaire: cross-validation among cardiac inpatients

    NARCIS (Netherlands)

    Beek, M.H. van; Oude Voshaar, R.C.; Deelen, F.M. van; Balkom, A.J. van; Pop, G.A.; Speckens, A.E.

    2012-01-01

    OBJECTIVE: General anxiety symptoms are common in patients with cardiac disease and considered to have an adverse effect on cardiac prognosis. The role of specific cardiac anxiety, however, is still unknown. The aim of this study is to examine the factor structure, reliability, and validity of the D

  4. THE CARDIAC ANXIETY QUESTIONNAIRE : CROSS-VALIDATION AMONG CARDIAC INPATIENTS

    NARCIS (Netherlands)

    van Beek, M. H. C. T.; Voshaar, R. C. Oude; van Deelen, F. M.; van Balkom, A. J. L. M.; Pop, G.; Speckens, A. E. M.

    2012-01-01

    Objective: General anxiety symptoms are common in patients with cardiac disease and considered to have an adverse effect on cardiac prognosis. The role of specific cardiac anxiety, however, is still unknown. The aim of this study is to examine the factor structure, reliability, and validity of the D

  5. Map Projection

    CERN Document Server

    Ghaderpour, Ebrahim

    2014-01-01

    In this paper, we introduce some known map projections from a model of the Earth to a flat sheet of paper or map and derive the plotting equations for these projections. The first fundamental form and the Gaussian fundamental quantities are defined and applied to obtain the plotting equations and distortions in length, shape and size for some of these map projections.

  6. Synergistic activation of cardiac genes by myocardin and Tbx5.

    Directory of Open Access Journals (Sweden)

    Chunbo Wang

    Full Text Available Myocardial differentiation is associated with the activation and expression of an array of cardiac specific genes. However, the transcriptional networks that control cardiac gene expression are not completely understood. Myocardin is a cardiac and smooth muscle-specific expressed transcriptional coactivator of Serum Response Factor (SRF and is able to potently activate cardiac and smooth muscle gene expression during development. We hypothesize that myocardin discriminates between cardiac and smooth muscle specific genes by associating with distinct co-factors. Here, we show that myocardin directly interacts with Tbx5, a member of the T-box family of transcription factors involved in the Holt-Oram syndrome. Tbx5 synergizes with myocardin to activate expression of the cardiac specific genes atrial natriuretic factor (ANF and alpha myosin heavy chain (α-MHC, but not that of smooth muscle specific genes SM22 or smooth muscle myosin heavy chain (SM-MHC. We found that this synergistic activation of shared target genes is dependent on the binding sites for Tbx5, T-box factor-Binding Elements (TBEs. Myocardin and Tbx5 physically interact and their interaction domains were mapped to the basic domain and the coil domain of myocardin and Tbx5, respectively. Our analysis demonstrates that the Tbx5G80R mutation, which leads to the Holt-Oram syndrome in humans, failed to synergize with myocardin to activate cardiac gene expression. These data uncover a key role for Tbx5 and myocardin in establishing the transcriptional foundation for cardiac gene activation and suggest that the interaction of myocardin and Tbx5 maybe involved in cardiac development and diseases.

  7. Cardiac output measurement

    Directory of Open Access Journals (Sweden)

    Andreja Möller Petrun

    2014-02-01

    Full Text Available In recent years, developments in the measuring of cardiac output and other haemodynamic variables are focused on the so-called minimally invasive methods. The aim of these methods is to simplify the management of high-risk and haemodynamically unstable patients. Due to the need of invasive approach and the possibility of serious complications the use of pulmonary artery catheter has decreased. This article describes the methods for measuring cardiac output, which are based on volume measurement (Fick method, indicator dilution method, pulse wave analysis, Doppler effect, and electrical bioimpedance.

  8. Vector flow mapping for assessing Beagle dogs′ left ventricular vortex in selective bi-polar single site cardiac pacing%超声血流向量成像评价健康比格犬心脏不同位点起搏左心室血流涡旋

    Institute of Scientific and Technical Information of China (English)

    丁戈琦; 尹立雪; 王志刚; 陆景; 李文华; 张红梅

    2015-01-01

    Objective To investigate the changes of left ventricular(LV) vortex strength(VS) and distribution during selective cardiac pacing in a phases of cardiac cycle using vector flow mapping techniques ,and associate with LV mechanical performance ,so as to provide basic experimental database for optimizing the sites of the artificial cardiac pacing in clinic conditions .Methods Eight heathy open‐chest Beagle dog models were employed for selective right ventricular apical (RVAP ) ,left ventricular apical (LVAP) and lateral wall pacing (LVLP) .The standard two‐dimensional apical three views with color Doppler flow and dynamic two‐dimensional images were acquired consecutively in three cardiac cycles for further off‐line analysis ,conventional parameters were measured at same time .Results Compared with baseline ,LVSV ,LVEF ,LVCO and dp/dtmax were both reduced ,and the parameters obtained leftside cardiac pacing were lower than that of right ventricular pacing ( P < 0 0.5) ,there′s no significant difference in E/Vp .The vortex pattern ,distribution and vorticity at six typical phases induced by selective cardiac pacing were totally different from those at baseline with sinus rhythm ,and leftside pacing were worsen than RVAP ,the LVAP were most obvious .On multivariable regression analysis ,the VS during ES (VSES ) at baseline was independently related to late‐diastolic VS and longitudinal strain (R2 = 0 6.3 ,P < 0 0.01 and P=0 0.03 ,respectively) .Conclusions The selective cardiac pacing could induce intracardiac vortex changes and differ from that at baseline ,and the persistence of vortex from late diastole into ES is a haemodynamic measure of coupling between diastole and systole .%目的:应用超声血流向量成像(VFM)技术评价健康比格犬心脏不同位点起搏心动周期内左室流场涡旋分布、强度变化及心肌力学参数,探讨起搏状态下心腔内涡旋变化特征,为临床优化人工心脏起搏位点提供流体

  9. Perioperative management of cardiac disease.

    Science.gov (United States)

    Aresti, N A; Malik, A A; Ihsan, K M; Aftab, S M E; Khan, W S

    2014-01-01

    Pre-existing cardiac disease contributes significantly to morbidity and mortality amongst patients undergoing non cardiac surgery. Patients with pre-existing cardiac disease or with risk factors for it, have as much as a 3.9% risk of suffering a major perioperative cardiac event (Lee et al 1999, Devereaux 2005). Furthermore, the incidence of perioperative myocardial infarction (MI) is increased 10 to 50 fold in patients with previous coronary events (Jassal 2008).

  10. Physical Parameter Eclipse Mapping

    CERN Document Server

    Vrielmann, S

    2000-01-01

    The tomographic method "Physical Parameter Eclipse Mapping" is a tool to reconstruct spatial distributions of physical parameters (like temperatures and surface densities) in accretion discs of cataclysmic variables. After summarizing the method, we apply it to multi-colour eclipse light curves of various dwarf novae and nova-likes like VZ Scl, IP Peg in outburst, UU Aqr, V2051 Oph and HT Cas in order to derive the temperatures (and surface densities) in the disc, the white dwarf temperature, the disc size, the effective temperatures and the viscosities. The results allows us to establish or refine a physical model for the accretion disc. Our maps of HT Cas and V2051 Oph, for example, indicate that the (quiescent) disc must be structured into a cool, optically thick inner disc sandwiched by hot, optically thin chromospheres. In addition, the disc of HT Cas must be patchy with a covering factor of about 40% caused by magnetic activity in the disc.

  11. Biosynthesis of cardiac natriuretic peptides

    DEFF Research Database (Denmark)

    Goetze, Jens Peter

    2010-01-01

    Cardiac-derived peptide hormones were identified more than 25 years ago. An astonishing amount of clinical studies have established cardiac natriuretic peptides and their molecular precursors as useful markers of heart disease. In contrast to the clinical applications, the biogenesis of cardiac...

  12. Cardiac troponins and high-sensitivity cardiac troponin assays.

    Science.gov (United States)

    Conrad, Michael J; Jarolim, Petr

    2014-03-01

    Measurement of circulating cardiac troponins I and T has become integral to the diagnosis of myocardial infarction. This article discusses the structure and function of the troponin complex and the release of cardiac troponin molecules from the injured cardiomyocyte into the circulation. An overview of current cardiac troponin assays and their classification according to sensitivity is presented. The diagnostic criteria, role, and usefulness of cardiac troponin for myocardial infarction are discussed. In addition, several examples are given of the usefulness of high-sensitivity cardiac troponin assays for short-term and long-term prediction of adverse events.

  13. Topographic mapping

    Science.gov (United States)

    ,

    2008-01-01

    The U.S. Geological Survey (USGS) produced its first topographic map in 1879, the same year it was established. Today, more than 100 years and millions of map copies later, topographic mapping is still a central activity for the USGS. The topographic map remains an indispensable tool for government, science, industry, and leisure. Much has changed since early topographers traveled the unsettled West and carefully plotted the first USGS maps by hand. Advances in survey techniques, instrumentation, and design and printing technologies, as well as the use of aerial photography and satellite data, have dramatically improved mapping coverage, accuracy, and efficiency. Yet cartography, the art and science of mapping, may never before have undergone change more profound than today.

  14. Hepato-cardiac disorders

    Institute of Scientific and Technical Information of China (English)

    Yasser; Mahrous; Fouad; Reem; Yehia

    2014-01-01

    Understanding the mutual relationship between the liver and the heart is important for both hepatologists and cardiologists. Hepato-cardiac diseases can be classified into heart diseases affecting the liver, liver diseases affecting the heart, and conditions affecting the heart and the liver at the same time. Differential diagnoses of liver injury are extremely important in a cardiologist’s clinical practice calling for collaboration between cardiologists and hepatologists due to the many other diseases that can affect the liver and mimic haemodynamic injury. Acute and chronic heart failure may lead to acute ischemic hepatitis or chronic congestive hepatopathy. Treatment in these cases should be directed to the primary heart disease. In patients with advanced liver disease, cirrhotic cardiomyopathy may develop including hemodynamic changes, diastolic and systolic dysfunctions, reduced cardiac performance and electrophysiological abnormalities. Cardiac evaluation is important for patients with liver diseases especially before and after liver transplantation. Liver transplantation may lead to the improvement of all cardiac changes and the reversal of cirrhotic cardiomyopathy. There are systemic diseases that may affect both the liver and the heart concomitantly including congenital, metabolic and inflammatory diseases as well as alcoholism. This review highlights these hepatocardiac diseases

  15. The cardiac malpositions.

    Science.gov (United States)

    Perloff, Joseph K

    2011-11-01

    Dextrocardia was known in the 17th century and was 1 of the first congenital malformations of the heart to be recognized. Fifty years elapsed before Matthew Baillie published his account of complete transposition in a human of the thoracic and abdominal viscera to the opposite side from what is natural. In 1858, Thomas Peacock stated that "the heart may be congenitally misplaced in various ways, occupying either an unusual position within the thorax, or being situated external to that cavity." In 1915, Maude Abbott described ectopia cordis, and Richard Paltauf's remarkable illustrations distinguished the various types of dextrocardia. In 1928, the first useful classification of the cardiac malpositions was proposed, and in 1966, Elliott et al's radiologic classification set the stage for clinical recognition. The first section of this review deals with the 3 basic cardiac malpositions in the presence of bilateral asymmetry. The second section deals with cardiac malpositions in the presence of bilateral left-sidedness or right-sidedness. Previous publications on cardiac malpositions are replete with an arcane vocabulary that confounds rather than clarifies. Even if the terms themselves are understood, inherent complexity weighs against clarity. This review was designed as a guided tour of an unfamiliar subject.

  16. Sudden cardiac death

    DEFF Research Database (Denmark)

    Hougen, H P; Valenzuela, Antonio Jesus Sanchez; Lachica, E

    1992-01-01

    The study deals with the comparison of morphological, histochemical and biochemical methods applied to the detection of myocardial infarction in 150 medico-legal autopsies performed at the Institute of Forensic Pathology in Copenhagen. The study also included an NBT (formazan) test of cardiac cro...

  17. Cardiac Risk Assessment

    Science.gov (United States)

    ... Risk Assessment Related tests: Lipid Profile , VLDL Cholesterol , hs-CRP , Lp(a) Overview | Common Questions | Related Pages What ... cardiac risk include: High-sensitivity C-reactive protein (hs-CRP) : Studies have shown that measuring CRP with a ...

  18. Cardiac Catheterization (For Teens)

    Science.gov (United States)

    ... once a day. Avoid baths, hot tubs, and swimming for 1 week after the catheterization. Don't use any creams, lotions, or ointments on the site. The doctor will tell you when it's safe to go back to your normal activities after a cardiac catheterization. ...

  19. Cardiac Tropism of Borrelia burgdorferi: An Autopsy Study of Sudden Cardiac Death Associated with Lyme Carditis.

    Science.gov (United States)

    Muehlenbachs, Atis; Bollweg, Brigid C; Schulz, Thadeus J; Forrester, Joseph D; DeLeon Carnes, Marlene; Molins, Claudia; Ray, Gregory S; Cummings, Peter M; Ritter, Jana M; Blau, Dianna M; Andrew, Thomas A; Prial, Margaret; Ng, Dianna L; Prahlow, Joseph A; Sanders, Jeanine H; Shieh, Wun Ju; Paddock, Christopher D; Schriefer, Martin E; Mead, Paul; Zaki, Sherif R

    2016-05-01

    Fatal Lyme carditis caused by the spirochete Borrelia burgdorferi rarely is identified. Here, we describe the pathologic, immunohistochemical, and molecular findings of five case patients. These sudden cardiac deaths associated with Lyme carditis occurred from late summer to fall, ages ranged from young adult to late 40s, and four patients were men. Autopsy tissue samples were evaluated by light microscopy, Warthin-Starry stain, immunohistochemistry, and PCR for B. burgdorferi, and immunohistochemistry for complement components C4d and C9, CD3, CD79a, and decorin. Post-mortem blood was tested by serology. Interstitial lymphocytic pancarditis in a relatively characteristic road map distribution was present in all cases. Cardiomyocyte necrosis was minimal, T cells outnumbered B cells, plasma cells were prominent, and mild fibrosis was present. Spirochetes in the cardiac interstitium associated with collagen fibers and co-localized with decorin. Rare spirochetes were seen in the leptomeninges of two cases by immunohistochemistry. Spirochetes were not seen in other organs examined, and joint tissue was not available for evaluation. Although rare, sudden cardiac death caused by Lyme disease might be an under-recognized entity and is characterized by pancarditis and marked tropism of spirochetes for cardiac tissues.

  20. Cardiac neural crest contributes to cardiomyogenesis in zebrafish.

    Science.gov (United States)

    Sato, Mariko; Yost, H Joseph

    2003-05-01

    In birds and mammals, cardiac neural crest is essential for heart development and contributes to conotruncal cushion formation and outflow tract septation. The zebrafish prototypical heart lacks outflow tract septation, raising the question of whether cardiac neural crest exists in zebrafish. Here, results from three distinct lineage-labeling approaches identify zebrafish cardiac neural crest cells and indicate that these cells have the ability to generate MF20-positive muscle cells in the myocardium of the major chambers during development. Fate-mapping demonstrates that cardiac neural crest cells originate both from neural tube regions analogous to those found in birds, as well as from a novel region rostral to the otic vesicle. In contrast to other vertebrates, cardiac neural crest invades the myocardium in all segments of the heart, including outflow tract, atrium, atrioventricular junction, and ventricle in zebrafish. Three distinct groups of premigratory neural crest along the rostrocaudal axis have different propensities to contribute to different segments in the heart and are correspondingly marked by unique combinations of gene expression patterns. Zebrafish will serve as a model for understanding interactions between cardiac neural crest and cardiovascular development.

  1. Cardiac rehabilitation in the Navy.

    Science.gov (United States)

    Bruzek-Kohler, C M; Love, V; Hendrickson, R; Branford, M; Gates, A; Telvick, C

    1994-10-01

    Cardiac rehabilitation has been effective in the management and recovery of the post-myocardial infarction population for almost 40 years. During that time, the fundamental components of rehabilitation have changed to reflect a growing complexity and number of cardiac patients. Great Lakes Naval Hospital has instituted a structured outpatient cardiac rehabilitation program. It is based on the needs of a large cardiac population with modifiable risk factors identified through quality improvement studies. Future implications and research in the area of cardiac rehabilitation include measurements of self-efficacy, long-term risk factor modification, cost effectiveness, gender-related differences, or morbidity and mortality.

  2. Visualization and analysis of functional cardiac MRI data

    Science.gov (United States)

    McVeigh, Elliot R.; Guttman, Michael A.; Poon, Eric; Pisupati, Chandrasekhar; Moore, Christopher C.; Zerhouni, Elias A.; Solaiyappan, Meiyappan; Heng, PhengAnn

    1994-05-01

    Rapid analysis of large multi-dimensional data sets is critical for the successful implementation of a comprehensive MR cardiac exam. We have developed a software package for the analysis and visualization of cardiac MR data. The program allows interactive visualization of time and space stacks of MRI data, automatic segmentation of myocardial borders and myocardial tagging patterns, and visualization of functional parameters such a motion, strain, and blood flow, mapped as colors in an interactive dynamic 3D volume rendering of the beating heart.

  3. Cardiac involvement in myotonic dystrophy

    DEFF Research Database (Denmark)

    Lund, Marie; Diaz, Lars Jorge; Ranthe, Mattis Flyvholm

    2014-01-01

    disorders, arrhythmias, and device implantation). In the DM cohort, SIR for any cardiac disease was 3.42 [95% confidence interval (CI) 3.01-3.86]; for a cardiac disease belonging to the selected subgroups 6.91 (95% CI: 5.93-8.01) and for other cardiac disease 2.59 (95% CI: 2.03-3.25). For a cardiac disease......AIMS: To quantify the association between myotonic dystrophy (DM) and cardiac disease in a nationwide cohort. METHODS AND RESULTS: We identified a nationwide cohort of 1146 DM patients (period 1977-2011) using the National Patient Registry (NPR) and a subcohort of 485 patients who had undergone...... genetic testing for DM1. Information on incident cardiac diseases was obtained from the NPR. We estimated standardized incidence ratios (SIRs) of cardiac disease compared with the background population, overall and according to selected diagnostic subgroups (cardiomyopathy, heart failure, conduction...

  4. Optic glioma

    Science.gov (United States)

    Glioma - optic; Optic nerve glioma; Juvenile pilocytic astrocytoma; Brain cancer - optic glioma ... Optic gliomas are rare. The cause of optic gliomas is unknown. Most optic gliomas are slow-growing ...

  5. Mapping Deeply

    OpenAIRE

    Denis Wood

    2015-01-01

    This is a description of an avant la lettre deep mapping project carried out by a geographer and a number of landscape architecture students in the early 1980s. Although humanists seem to take the “mapping” in deep mapping more metaphorically than cartographically, in this neighborhood mapping project, the mapmaking was taken literally, with the goal of producing an atlas of the neighborhood. In this, the neighborhood was construed as a transformer, turning the stuff of the world (gas, wate...

  6. MRI in cardiac sarcoidosis and amyloidosis; MRT bei kardialer Sarkoidose und Amyloidose

    Energy Technology Data Exchange (ETDEWEB)

    Bauner, K.U. [Klinikum der Ludwig-Maximilians-Universitaet Muenchen, Campus Grosshadern, Institut fuer Klinische Radiologie, Muenchen (Germany); Wintersperger, B. [Klinikum der Ludwig-Maximilians-Universitaet Muenchen, Campus Grosshadern, Institut fuer Klinische Radiologie, Muenchen (Germany); University of Toronto, Department of Medical Imaging, Toronto General Hospital, Toronto, ON (Canada)

    2013-01-15

    Sarcoidosis and amyloidosis are both multisystem disorders, which may involve the heart; however, isolated cardiac disease is rare. Diagnosis of cardiac sarcoidosis and amyloidosis is crucial because the patient prognosis is dependent on cardiac involvement and early treatment. Echocardiography is the first line imaging modality in the diagnostic work-up of both diseases, possibly giving hints towards the correct diagnosis. Besides myocardial biopsy and radionuclide studies cardiac magnetic resonance imaging (MRI) is routinely performed in patients suspect of having infiltrative cardiomyopathy. The T1 mapping procedure is currently being evaluated as a new technique for detection and quantification of global myocardial enhancement, as seen in cardiac amyloidosis. Sensitivities and specificities for detection of cardiac sarcoidosis and amyloidosis can be significantly improved by MRI, especially with late gadolinium enhancement (LGE) imaging. In cardiac sarcoidosis the use of LGE is outcome-related while in amyloidosis analysis of T1-mapping may be of prognostic value. If cardiac involvement in sarcoidosis or amyloidosis is suspected cardiac MRI including LGE should be performed for establishing the diagnosis. (orig.) [German] Die Sarkoidose und Amyloidose sind Multisystemerkrankungen, in deren Verlauf es zu einer kardialen Beteiligung kommen kann. Bildgebend wird als primaeres Verfahren die Echokardiographie eingesetzt. Zur weiteren Diagnostik wird neben der Biopsie und nuklearmedizinischen Verfahren v. a. die MRT herangezogen. Als neuere Technik zur Darstellung globaler diffuser Kontrastmittelanreicherungen, wie sie im Rahmen der Amyloidose vorkommen, wird z. Z. das T1-Mapping evaluiert. Durch den Einsatz der MRT, insbesondere des Late-Gadolinium-Enhancements (LGE), koennen die Sensitivitaet und Spezifitaet in der Diagnostik der kardialen Sarkoidose und Amyloidose entscheidend verbessert werden. Bei der Sarkoidose stellt das Vorhandensein eines LGE einen

  7. Cardiac fusion and complex congenital cardiac defects in thoracopagus twins: diagnostic value of cardiac CT

    Energy Technology Data Exchange (ETDEWEB)

    Goo, Hyun Woo [University of Ulsan College of Medicine, Asan Medical Center, Department of Radiology and Research Institute of Radiology, Seoul (Korea, Republic of); Park, Jeong-Jun [University of Ulsan College of Medicine, Asan Medical Center, Department of Pediatric Cardiac Surgery, Seoul (Korea, Republic of); Kim, Ellen Ai-Rhan [University of Ulsan College of Medicine, Asan Medical Center, Division of Neonatology, Department of Pediatrics, Seoul (Korea, Republic of); Won, Hye-Sung [University of Ulsan College of Medicine, Asan Medical Center, Department of Obstetrics and Gynecology, Seoul (Korea, Republic of)

    2014-09-15

    Most thoracopagus twins present with cardiac fusion and associated congenital cardiac defects, and assessment of this anatomy is of critical importance in determining patient care and outcome. Cardiac CT with electrocardiographic triggering provides an accurate and quick morphological assessment of both intracardiac and extracardiac structures in newborns, making it the best imaging modality to assess thoracopagus twins during the neonatal period. In this case report, we highlight the diagnostic value of cardiac CT in thoracopagus twins with an interatrial channel and complex congenital cardiac defects. (orig.)

  8. Polynomial mappings

    CERN Document Server

    Narkiewicz, Wŀadysŀaw

    1995-01-01

    The book deals with certain algebraic and arithmetical questions concerning polynomial mappings in one or several variables. Algebraic properties of the ring Int(R) of polynomials mapping a given ring R into itself are presented in the first part, starting with classical results of Polya, Ostrowski and Skolem. The second part deals with fully invariant sets of polynomial mappings F in one or several variables, i.e. sets X satisfying F(X)=X . This includes in particular a study of cyclic points of such mappings in the case of rings of algebrai integers. The text contains several exercises and a list of open problems.

  9. Participatory Maps

    DEFF Research Database (Denmark)

    Salovaara-Moring, Inka

    2016-01-01

    practice. In particular, mapping environmental damage, endangered species, and human-made disasters has become one focal point for environmental knowledge production. This type of digital map has been highlighted as a processual turn in critical cartography, whereas in related computational journalism...... of a geo-visualization within information mapping that enhances embodiment in the experience of the information. InfoAmazonia is defined as a digitally created map-space within which journalistic practice can be seen as dynamic, performative interactions between journalists, ecosystems, space, and species...

  10. AGORA: Assembly Guided by Optical Restriction Alignment

    Directory of Open Access Journals (Sweden)

    Lin Henry C

    2012-08-01

    Full Text Available Abstract Background Genome assembly is difficult due to repeated sequences within the genome, which create ambiguities and cause the final assembly to be broken up into many separate sequences (contigs. Long range linking information, such as mate-pairs or mapping data, is necessary to help assembly software resolve repeats, thereby leading to a more complete reconstruction of genomes. Prior work has used optical maps for validating assemblies and scaffolding contigs, after an initial assembly has been produced. However, optical maps have not previously been used within the genome assembly process. Here, we use optical map information within the popular de Bruijn graph assembly paradigm to eliminate paths in the de Bruijn graph which are not consistent with the optical map and help determine the correct reconstruction of the genome. Results We developed a new algorithm called AGORA: Assembly Guided by Optical Restriction Alignment. AGORA is the first algorithm to use optical map information directly within the de Bruijn graph framework to help produce an accurate assembly of a genome that is consistent with the optical map information provided. Our simulations on bacterial genomes show that AGORA is effective at producing assemblies closely matching the reference sequences. Additionally, we show that noise in the optical map can have a strong impact on the final assembly quality for some complex genomes, and we also measure how various characteristics of the starting de Bruijn graph may impact the quality of the final assembly. Lastly, we show that a proper choice of restriction enzyme for the optical map may substantially improve the quality of the final assembly. Conclusions Our work shows that optical maps can be used effectively to assemble genomes within the de Bruijn graph assembly framework. Our experiments also provide insights into the characteristics of the mapping data that most affect the performance of our algorithm, indicating the

  11. Sudden Cardiac Death

    Directory of Open Access Journals (Sweden)

    Yipsy María Gutiérrez Báez

    2015-09-01

    Full Text Available Since the second half of the twentieth century, dying suddenly due to heart-related problems has become the main health issue in all countries where infectious diseases are not prevalent. Sudden death from cardiac causes is an important global health problem. Major databases were searched for the leading causes of sudden cardiac death. It has been demonstrated that there is a group of hereditary diseases with structural alterations or without apparent organic cause that explains many cases of sudden death in young people, whether related or not to physical exertion. Certain population groups are at higher risk for this disease. They are relatively easy to identify and can be the target of primary prevention measures.

  12. Cardiac nuclear medicine

    Energy Technology Data Exchange (ETDEWEB)

    Gerson, M.C.

    1987-01-01

    The book begins with a review of the radionuclide methods available for evaluating cardiac perfusion and function. The authors discuss planar and tomographic thallium myocardial imaging, first-pass and equilibrium radionuclide angiography, and imaging with infarct-avid tracers. Several common but more specialized procedures are then reviewed: nonogemetric measurement of left ventricular volume, phase (Fourier) analysis, stroke volume ratio, right ventricular function, and diastolic function. A separate chapter is devoted to drug interventions and in particular the use of radionuclide ventriculography to monitor doxorubicin toxicity and therapy of congestive heart failure. The subsequent chapters provide a comprehensive guide to test selection, accuracy, and results in acute myocardial infarction, in postmyocardial infarction, in chronic coronary artery disease, before and after medical or surgical revascularization, in valvular heart disease, in cardiomyopathies, and in cardiac trauma.

  13. Cardiac arrest in children

    Directory of Open Access Journals (Sweden)

    Tress Erika

    2010-01-01

    Full Text Available Major advances in the field of pediatric cardiac arrest (CA were made during the last decade, starting with the publication of pediatric Utstein guidelines, the 2005 recommendations by the International Liaison Committee on Resuscitation, and culminating in multicenter collaborations. The epidemiology and pathophysiology of in-hospital and out-of-hospital CA are now well described. Four phases of CA are described and the term "post-cardiac arrest syndrome" has been proposed, along with treatment goals for each of its four phases: immediate post-arrest, early post-arrest, intermediate and recovery phase. Hypothermia is recommended to be considered as a therapy for post-CA syndrome in comatose patients after CA, and large multicenter prospective studies are underway. We reviewed landmark articles related to pediatric CA published during the last decade. We present the current knowledge of epidemiology, pathophysiology and treatment of CA relevant to pre-hospital and acute care health practitioners.

  14. Cardiac arrhythmias in pregnancy.

    Science.gov (United States)

    Knotts, Robert J; Garan, Hasan

    2014-08-01

    As more women with repaired congenital heart disease survive to their reproductive years and many other women are delaying pregnancy until later in life, a rising concern is the risk of cardiac arrhythmias during pregnancy. Naturally occurring cardiovascular changes during pregnancy increase the likelihood that a recurrence of a previously experienced cardiac arrhythmia or a de novo arrhythmia will occur. Arrhythmias should be thoroughly investigated to determine if there is a reversible etiology, and risks/benefits of treatment options should be fully explored. We discuss the approach to working up and treating various arrhythmias during pregnancy with attention to fetal and maternal risks as well as treatment of fetal arrhythmias. Acute management in stable patients includes close monitoring and intravenous pharmacologic therapy, while DC cardioversion should be used to terminate arrhythmias in hemodynamically unstable patients. Long-term management may require continued oral antiarrhythmic therapy, with particular attention to fetal safety, to prevent complications associated with arrhythmias.

  15. Space Telescope and Optical Reverberation Mapping Project. I. Ultraviolet Observations of the Seyfert 1 Galaxy NGC 5548 with the Cosmic Origins Spectrograph on Hubble Space Telescope

    CERN Document Server

    De Rosa, G; Ely, J; Kriss, G A; Crenshaw, D M; Horne, Keith; Korista, K T; Netzer, H; Pogge, R W; Arevalo, P; Barth, A J; Bentz, M C; Brandt, W N; Breeveld, A A; Brewer, B J; Bonta, E Dalla; De Lorenzo-Caceres, A; Denney, K D; Dietrich, M; Edelson, R; Evans, P A; Fausnaugh, M M; Gehrels, N; Gelbord, J M; Goad, M R; Grier, C J; Grupe, D; Hall, P B; Kaastra, J; Kelly, B C; Kennea, J A; Kochanek, C S; Lira, P; Mathur, S; McHardy, I M; Nousek, J A; Pancoast, A; Papadakis, I; Pei, L; Schimoia, J S; Siegel, M; Starkey, D; Treu, T; Uttley, P; Vaughan, S; Vestergaard, M; Villforth, C; Yan, H; Young, S; Zu, Y

    2015-01-01

    We describe the first results from a six-month long reverberation-mapping experiment in the ultraviolet based on 170 observations of the Seyfert 1 galaxy NGC 5548 with the Cosmic Origins Spectrograph on the Hubble Space Telescope. Significant correlated variability is found in the continuum and broad emission lines, with amplitudes ranging from ~30% to a factor of two in the emission lines and a factor of three in the continuum. The variations of all the strong emission lines lag behind those of the continuum, with He II 1640 lagging behind the continuum by ~2.5 days and Lyman alpha 1215, C IV 1550, and Si IV 1400 lagging by ~5-6 days. The relationship between the continuum and emission lines is complex. In particular, during the second half of the campaign, all emission-line lags increased by a factor of 1.3-2 and differences appear in the detailed structure of the continuum and emission-line light curves. Velocity-resolved cross-correlation analysis shows coherent structure in lag versus line-of-sight veloc...

  16. Elemental mapping in a contemporary miniature by full-field X-ray fluorescence imaging with gaseous detector vs. scanning X-ray fluorescence imaging with polycapillary optics

    Science.gov (United States)

    Silva, A. L. M.; Cirino, S.; Carvalho, M. L.; Manso, M.; Pessanha, S.; Azevedo, C. D. R.; Carramate, L. F. N. D.; Santos, J. P.; Guerra, M.; Veloso, J. F. C. A.

    2017-03-01

    Energy dispersive X-ray imaging can be used in several research fields and industrial applications. Elemental mapping through energy dispersive X-ray imaging technique has become a promising method to obtain positional distribution of specific elements in a non-destructive way. To obtain the elemental distribution of a sample it is necessary to use instruments capable of providing a precise positioning together with a good energy resolution. Polycapillary beams together with silicon drift chamber detectors are used in several commercial systems and are considered state-of-the-art spectrometers, however they are usually very costly. A new concept of large energy dispersive X-ray imaging systems based on gaseous radiation detectors emerged in the last years enabling a promising 2D elemental detection at a very reduced price. The main goal of this work is to analyze a contemporary Indian miniature with both X-ray fluorescence imaging systems, the one based on a gaseous detector 2D-THCOBRA and the state-of-the-art spectrometer M4 Tornado, from Bruker. The performance of both systems is compared and evaluated in the context of the sample's analysis.

  17. CRED Cumulative Map of Percent Scleractinian Coral Cover at Zealandia

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  18. CRED Cumulative Map of Percent Scleractinian Coral Cover at Maug

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  19. CRED Cumulative Map of Percent Scleractinian Coral Cover at Tutuila

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  20. CRED Cumulative Map of Percent Scleractinian Coral Cover at Guguan

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  1. CRED Cumulative Map of Percent Scleractinian Coral Cover at Arakane

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  2. CRED Cumulative Map of Percent Scleractinian Coral Cover at Saipan

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  3. CRED Cumulative Map of Percent Scleractinian Coral Cover at Sarigan

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  4. CRED Cumulative Map of Percent Scleractinian Coral Cover at Agrihan

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  5. CRED Cumulative Map of Percent Scleractinian Coral Cover at Anatahan

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This map displays optical validation observation locations and percent coverage of scleractinian coral overlaid on bathymetry.

  6. The Role of Cardiac Side Population Cells in Cardiac Regeneration

    Science.gov (United States)

    Yellamilli, Amritha; van Berlo, Jop H.

    2016-01-01

    The heart has a limited ability to regenerate. It is important to identify therapeutic strategies that enhance cardiac regeneration in order to replace cardiomyocytes lost during the progression of heart failure. Cardiac progenitor cells are interesting targets for new regenerative therapies because they are self-renewing, multipotent cells located in the heart. Cardiac side population cells (cSPCs), the first cardiac progenitor cells identified in the adult heart, have the ability to differentiate into cardiomyocytes, endothelial cells, smooth muscle cells, and fibroblasts. They become activated in response to cardiac injury and transplantation of cSPCs into the injured heart improves cardiac function. In this review, we will discuss the current literature on the progenitor cell properties and therapeutic potential of cSPCs. This body of work demonstrates the great promise cSPCs hold as targets for new regenerative strategies. PMID:27679798

  7. Cardiac hybrid imaging

    Energy Technology Data Exchange (ETDEWEB)

    Gaemperli, Oliver [University Hospital Zurich, Cardiac Imaging, Zurich (Switzerland); University Hospital Zurich, Nuclear Cardiology, Cardiovascular Center, Zurich (Switzerland); Kaufmann, Philipp A. [University Hospital Zurich, Cardiac Imaging, Zurich (Switzerland); Alkadhi, Hatem [University Hospital Zurich, Institute of Diagnostic and Interventional Radiology, Zurich (Switzerland)

    2014-05-15

    Hybrid cardiac single photon emission computed tomography (SPECT)/CT imaging allows combined assessment of anatomical and functional aspects of cardiac disease. In coronary artery disease (CAD), hybrid SPECT/CT imaging allows detection of coronary artery stenosis and myocardial perfusion abnormalities. The clinical value of hybrid imaging has been documented in several subsets of patients. In selected groups of patients, hybrid imaging improves the diagnostic accuracy to detect CAD compared to the single imaging techniques. Additionally, this approach facilitates functional interrogation of coronary stenoses and guidance with regard to revascularization procedures. Moreover, the anatomical information obtained from CT coronary angiography or coronary artery calcium scores (CACS) adds prognostic information over perfusion data from SPECT. The use of cardiac hybrid imaging has been favoured by the dissemination of dedicated hybrid systems and the release of dedicated image fusion software, which allow simple patient throughput for hybrid SPECT/CT studies. Further technological improvements such as more efficient detector technology to allow for low-radiation protocols, ultra-fast image acquisition and improved low-noise image reconstruction algorithms will be instrumental to further promote hybrid SPECT/CT in research and clinical practice. (orig.)

  8. Cardiac tissue engineering

    Directory of Open Access Journals (Sweden)

    MILICA RADISIC

    2005-03-01

    Full Text Available We hypothesized that clinically sized (1-5 mm thick,compact cardiac constructs containing physiologically high density of viable cells (~108 cells/cm3 can be engineered in vitro by using biomimetic culture systems capable of providing oxygen transport and electrical stimulation, designed to mimic those in native heart. This hypothesis was tested by culturing rat heart cells on polymer scaffolds, either with perfusion of culture medium (physiologic interstitial velocity, supplementation of perfluorocarbons, or with electrical stimulation (continuous application of biphasic pulses, 2 ms, 5 V, 1 Hz. Tissue constructs cultured without perfusion or electrical stimulation served as controls. Medium perfusion and addition of perfluorocarbons resulted in compact, thick constructs containing physiologic density of viable, electromechanically coupled cells, in contrast to control constructs which had only a ~100 mm thick peripheral region with functionally connected cells. Electrical stimulation of cultured constructs resulted in markedly improved contractile properties, increased amounts of cardiac proteins, and remarkably well developed ultrastructure (similar to that of native heart as compared to non-stimulated controls. We discuss here the state of the art of cardiac tissue engineering, in light of the biomimetic approach that reproduces in vitro some of the conditions present during normal tissue development.

  9. Molecular nuclear cardiac imaging

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Dong Soo; Paeng, Jin Chul [College of Medicine, Seoul National Univ., Seoul (Korea, Republic of)

    2004-04-01

    Molecular nuclear cardiac imaging has included Tc-99m Annexin imaging to visualize myocardial apoptosis, but is now usually associated with gene therapy and cell-based therapy. Cardiac gene therapy was not successful so far but cardiac reporter gene imaging was made possible using HSV-TK (herpes simplex virus thymidine kinase) and F-18 FHBG (fluoro-hydroxymethylbutyl guanine) or I-124 FIAU (fluoro-deoxyiodo-arabino-furanosyluracil). Gene delivery was performed by needle injection with or without catheter guidance. TK expression did not last longer than 2 weeks in myocardium. Cell-based therapy of ischemic heart or failing heart looks promising, but biodistribution and differentiation of transplanted cells are not known. Reporter genes can be transfected to the stem/progenitor cells and cells containing these genes can be transplanted to the recipients using catheter-based purging or injection. Repeated imaging should be available and if promoter are varied to let express reporter transgenes, cellular (trans)differentiation can be studied. NIS (sodium iodide symporter) or D2R receptor genes are promising in this aspect.

  10. Cardiac surgery 2015 reviewed.

    Science.gov (United States)

    Doenst, Torsten; Strüning, Constanze; Moschovas, Alexandros; Gonzalez-Lopez, David; Essa, Yasin; Kirov, Hristo; Diab, Mahmoud; Faerber, Gloria

    2016-10-01

    For the year 2015, almost 19,000 published references can be found in PubMed when entering the search term "cardiac surgery". The last year has been again characterized by lively discussions in the fields where classic cardiac surgery and modern interventional techniques overlap. Lacking evidence in the field of coronary revascularization with either percutaneous coronary intervention or bypass surgery has been added. As in the years before, CABG remains the gold standard for the revascularization of complex stable triple-vessel disease. Plenty of new information has been presented comparing the conventional to transcatheter aortic valve implantation (TAVI) demonstrating similar short- and mid-term outcomes at high and low risk, but even a survival advantage with transfemoral TAVI at intermediate risk. In addition, there were many relevant and interesting other contributions from the purely operative arena. This review article will summarize the most pertinent publications in the fields of coronary revascularization, surgical treatment of valve disease, heart failure (i.e., transplantation and ventricular assist devices), and aortic surgery. While the article does not have the expectation of being complete and cannot be free of individual interpretation, it provides a condensed summary that is intended to give the reader "solid ground" for up-to-date decision-making in cardiac surgery.

  11. Collection Mapping.

    Science.gov (United States)

    Harbour, Denise

    2002-01-01

    Explains collection mapping for library media collections. Discusses purposes for creating collection maps, including helping with selection and weeding decisions, showing how the collection supports the curriculum, and making budget decisions; and methods of data collection, including evaluating a collaboratively taught unit with the classroom…

  12. Causal mapping

    DEFF Research Database (Denmark)

    Rasmussen, Lauge Baungaard

    2006-01-01

    The lecture note explains how to use the causal mapping method as well as the theoretical framework aoosciated to the method......The lecture note explains how to use the causal mapping method as well as the theoretical framework aoosciated to the method...

  13. Affective Maps

    DEFF Research Database (Denmark)

    Salovaara-Moring, Inka

    of environmental knowledge production. It uses InfoAmazonia, the databased platform on Amazon rainforests, as an example of affective geo-visualization within information mapping that enhances embodiment in the experience of the information. Amazonia is defined as a digitally created affective (map)space within...

  14. Observation of Transient Overcritical Currents in YBCO Thin Films using High-Speed Magneto-Optical Imaging and Dynamic Current Mapping

    Science.gov (United States)

    Wells, Frederick S.; Pan, Alexey V.; Golovchanskiy, Igor A.; Fedoseev, Sergey A.; Rozenfeld, Anatoly

    2017-01-01

    The dynamics of transient current distributions in superconducting YBa2Cu3O7−δ thin films were investigated during and immediately following an external field ramp, using high-speed (real-time) Magneto-Optical Imaging and calculation of dynamic current profiles. A number of qualitatively unique and previously unobserved features are seen in this novel analysis of the evolution of supercurrent during penetration. As magnetic field ramps up from zero, the dynamic current profile is characterized by strong peaks, the magnitude of which exceed the conventional critical current density (as determined from static current profiles). These peaks develop close to the sample edges, initially resembling screening currents but quickly growing in intensity as the external field increases. A discontinuity in field and current behaviour is newly observed, indicating a novel transition from increasing peak current toward relaxation behaviour. After this transition, the current peaks move toward the centre of the sample while reducing in intensity as magnetic vortices penetrate inward. This motion slows exponentially with time, with the current distribution in the long-time limit reducing to the expected Kim-model profile. PMID:28067331

  15. Observation of Transient Overcritical Currents in YBCO Thin Films using High-Speed Magneto-Optical Imaging and Dynamic Current Mapping.

    Science.gov (United States)

    Wells, Frederick S; Pan, Alexey V; Golovchanskiy, Igor A; Fedoseev, Sergey A; Rozenfeld, Anatoly

    2017-01-09

    The dynamics of transient current distributions in superconducting YBa2Cu3O7-δ thin films were investigated during and immediately following an external field ramp, using high-speed (real-time) Magneto-Optical Imaging and calculation of dynamic current profiles. A number of qualitatively unique and previously unobserved features are seen in this novel analysis of the evolution of supercurrent during penetration. As magnetic field ramps up from zero, the dynamic current profile is characterized by strong peaks, the magnitude of which exceed the conventional critical current density (as determined from static current profiles). These peaks develop close to the sample edges, initially resembling screening currents but quickly growing in intensity as the external field increases. A discontinuity in field and current behaviour is newly observed, indicating a novel transition from increasing peak current toward relaxation behaviour. After this transition, the current peaks move toward the centre of the sample while reducing in intensity as magnetic vortices penetrate inward. This motion slows exponentially with time, with the current distribution in the long-time limit reducing to the expected Kim-model profile.

  16. Observation of Transient Overcritical Currents in YBCO Thin Films using High-Speed Magneto-Optical Imaging and Dynamic Current Mapping

    Science.gov (United States)

    Wells, Frederick S.; Pan, Alexey V.; Golovchanskiy, Igor A.; Fedoseev, Sergey A.; Rozenfeld, Anatoly

    2017-01-01

    The dynamics of transient current distributions in superconducting YBa2Cu3O7‑δ thin films were investigated during and immediately following an external field ramp, using high-speed (real-time) Magneto-Optical Imaging and calculation of dynamic current profiles. A number of qualitatively unique and previously unobserved features are seen in this novel analysis of the evolution of supercurrent during penetration. As magnetic field ramps up from zero, the dynamic current profile is characterized by strong peaks, the magnitude of which exceed the conventional critical current density (as determined from static current profiles). These peaks develop close to the sample edges, initially resembling screening currents but quickly growing in intensity as the external field increases. A discontinuity in field and current behaviour is newly observed, indicating a novel transition from increasing peak current toward relaxation behaviour. After this transition, the current peaks move toward the centre of the sample while reducing in intensity as magnetic vortices penetrate inward. This motion slows exponentially with time, with the current distribution in the long-time limit reducing to the expected Kim-model profile.

  17. Cardiac assessment prior to non-cardiac surgery.

    Science.gov (United States)

    Mooney, J F; Hillis, G S; Lee, V W; Halliwell, R; Vicaretti, M; Moncrieff, C; Chow, C K

    2016-08-01

    Increasingly, patients undergoing non-cardiac surgery are older and have more comorbidities yet preoperative cardiac assessment appears haphazard and unsystematic. We hypothesised that patients at high cardiac risk were not receiving adequate cardiac assessment, and patients with low-cardiac risk were being over-investigated. To compare in a representative sample of patients undergoing non-cardiac surgery the use of cardiac investigations in patients at high and low preoperative cardiac risk. We examined cardiac assessment patterns prior to elective non-cardiac surgery in a representative sample of patients. Cardiac risk was calculated using the Revised Cardiac Risk Index. Of 671 patients, 589 (88%) were low risk and 82 (12%) were high risk. We found that nearly 14% of low-risk and 45% of high-risk patients had investigations for coronary ischaemia prior to surgery. Vascular surgery had the highest rate of investigation (38%) and thoracic patients the lowest rate (14%). Whilst 78% of high-risk patients had coronary disease, only 46% were on beta-blockers, 49% on aspirin and 77% on statins. For current smokers (17.3% of cohort, n = 98), 60% were advised to quit pre-op. Practice patterns varied across surgical sub-types with low-risk patients tending to be over-investigated and high-risk patients under-investigated. A more systemised approach to this large group of patients could improve clinical outcomes, and more judicious use of investigations could lower healthcare costs and increase efficiency in managing this cohort. © 2016 Royal Australasian College of Physicians.

  18. Functional cardiac imaging by random access microscopy

    Directory of Open Access Journals (Sweden)

    Claudia eCrocini

    2014-10-01

    Full Text Available Advances in the development of voltage sensitive dyes and Ca2+ sensors in combination with innovative microscopy techniques allowed researchers to perform functional measurements with an unprecedented spatial and temporal resolution. At the moment, one of the shortcomings of available technologies is their incapability of imaging multiple fast phenomena while controlling the biological determinants involved. In the near future, ultrafast deflectors can be used to rapidly scan laser beams across the sample, performing optical measurements of action potential and Ca2+ release from multiple sites within cardiac cells and tissues. The same scanning modality could also be used to control local Ca2+ release and membrane electrical activity by activation of caged compounds and light-gated ion channels. With this approach, local Ca2+ or voltage perturbations could be induced, simulating arrhythmogenic events, and their impact on physiological cell activity could be explored. The development of this optical methodology will provide fundamental insights in cardiac disease, boosting new therapeutic strategies, and, more generally, it will represent a new approach for the investigation of the physiology of excitable cells.

  19. Indirect imaging of cardiac-specific transgene expression using a bidirectional two-step transcriptional amplification strategy

    DEFF Research Database (Denmark)

    Chen, I Y; Gheysens, O; Ray, S

    2010-01-01

    Transcriptional targeting for cardiac gene therapy is limited by the relatively weak activity of most cardiac-specific promoters. We have developed a bidirectional plasmid vector, which uses a two-step transcriptional amplification (TSTA) strategy to enhance the expression of two optical reporter...

  20. 心内组织多普勒超声显像标测心脏传导系统心肌兴奋心肌电和机械兴奋多参数显像%Cardiac conductive system excitation maps using intracardiac ultrasound catheter with tissue Doppler imaging:multiparametric imaging of electrical and mechanical activation

    Institute of Scientific and Technical Information of China (English)

    尹立雪; 蔡力; 李春梅; 邓燕; 罗芸; 郑昌琼; 李德舆; 赵树魁

    2001-01-01

    feasible tissue Doppler maps of myocardial contraction in response to electrical activation of cardiac conductive system using intracardiac ultrasound catheter with high resolution tissue Doppler imaging (TDI).Methods Open-chest model of five dogs were used. An intracardiac ultrasound catheter with TDI capabilities was introduced into SVC, right atria and ventricle. The stimulating electrode was placed within ventricular subepicardium and subendocardium. 2D gray-scale ultrasonic examination was performed to observe the anatomic structure of sino-atrial node (SAN), right Koch's triangle, IVS and free ventricular wall. M-mode and 2D TDI were obtained to map myocardial velocity and acceleration with normal sinus rhyme at different sites of cardiac conductive system described above. Mapping of ventricular myocardial velocity and acceleration was performed during pacing. The regional myocardial excitation on the 2D TDI images was analyzed using a dedicated method for quantification.Results The detail anatomic structure of SAN with a dramatic increase of velocity and acceleration of SAN was presented at the beginning of atrial electrical excitation. The changes of velocity and acceleration of SAN as a time sequence curve quantitatively demonstrated the process of SAN′s excitation. A high value distribution of velocity and acceleration within right Koch′s triangle progressed into upper IVS before the early ventricular electrical excitation. The ventricular onset of myocardial velocity and acceleration induced by electrical stimulation was exactly at the location of electrical stimulating sites with size less than 5 mm, and coextended as concentric circle within ventricular wall. The delay of myocardial contraction is less than 7 ms.Conclusions The onset and propagation of myocardial velocity and acceleration can be defined within cardiac conductive system using intracardiac ultrasonic catheter with TDI. This techniqne will provide a simultaneous single visualization of

  1. 血流向量图评价心脏再同步化治疗中长期患者暂时中断起搏器前后左心室流场演变%Evaluation on left ventricular intra-cardiac flow field before and after temporary interruption of pacemaker in mid-to-long-term cardiac resynchronization therapy patients by vector flow mapping

    Institute of Scientific and Technical Information of China (English)

    叶晶晶; 纳丽莎; 刘丽文; 马斌; 沈敏; 左蕾; 高文霞; 周海燕

    2014-01-01

    目的 应用血流向量图(VFM)评价心脏再同步化治疗(CRT)中长期患者暂时中断起搏器前后左室收缩期血液流场变化特征以及心功能变化情况.方法 严格按照入选标准选择起搏器植入术后6个月以上的对CRT有反应的患者32例,分别于中断起搏器前后行超声心动图检查,依次测量左室短轴舒张末内径(LVEDD)及收缩末内径(LVESD),左室舒张末容积(LVEDV)及收缩末容积(LVESV),并计算左室射血分数(LVEF),测量左室压力最大上升速率(LVDp/Dtmax),主动脉瓣上血流速度时间积分(AV-VTI),二尖瓣反流容积(MRV)、面积(MRA).利用VFM软件采集左室内血流向量图像,启用涡流模式图,取二尖瓣关闭瞬间(MVC)、主动脉瓣开放瞬间(AVO)、主动脉血流速度达峰瞬间(APV)以及主动脉瓣关闭瞬间(AVC)四个节点,分别测量涡流的横径(DH)、纵径(DL)、流量(FV)、深度(VD),计算涡流面积(VA),计算从主动脉瓣开放到主动脉血流速度达峰时涡流流量的衰减率(FV-CR%)和面积的衰减率(VA-CR%),并观察其演变特征.结果 与起搏器关闭前比较,关闭起搏器10 min后患者的AV-VTI、LVDp/Dtmax均降低,差异均具有统计学意义(P<0.05);据VFM观测从主动脉瓣开放到主动脉血流速度达峰时左室腔FV-CR%、VA-CR%均减低,差异均具有统计学意义(P<0.01);且LVEF与VA-CR%存在正相关,起搏器关闭前后其相关系数分别为0.632(P<0.01)和0.654(P<0.01).结论 暂时中断起搏器后常规超声心动图测量参数及VFM参数均出现明显恶化.VFM技术能够客观有效地反映中断起搏器前后左室收缩期血液流场特征的改变与左室功能的变化及其相关关系,并提示远期持续CRT治疗的必要性.%Objective To evaluate left ventricular systolic function and intra-cardiac flow field before and after temporary interruption of pacemaker in mid-to-long-term cardiac resynchronization therapy patients by vector flow

  2. On the integration of Airborne full-waveform laser scanning and optical imagery for Site Detection and Mapping: Monteserico study case

    Science.gov (United States)

    Coluzzi, R.; Guariglia, A.; Lacovara, B.; Lasaponara, R.; Masini, N.

    2009-04-01

    This paper analyses the capability of airborne LiDAR derived data in the recognition of archaeological marks. It also evaluates the benefits to integrate them with aerial photos and very high resolution satellite imagery. The selected test site is Monteserico, a medieval village located on a pastureland hill in the North East of Basilicata (Southern Italy). The site, attested by documentary sources beginning from the 12th century, was discovered by aerial survey in 1996 [1] and investigated in 2005 by using QuickBird imagery [2]. The only architectural evidence is a castle, built on the western top of the hill; whereas on the southern side, earthenware, pottery and crumbling building materials, related to the medieval settlement, could be observed. From a geological point of view, the stratigraphic sequence is composed of Subappennine Clays, Monte Marano sands and Irsina conglomerates. Sporadic herbaceous plants grow over the investigated area. For the purpose of this study, a full-waveform laser scanning with a 240.000 Hz frequency was used. The average point density value of dataset is about 30 points/m2. The final product is a 0.30 m Digital Surface Models (DSMs) accurately modelled. To derive the DSM the point cloud of the ALS was filtered and then classified by applying appropriate algorithms. In this way surface relief and archaeological features were surveyed with great detail. The DSM was compared with other remote sensing data source such as oblique and nadiral aerial photos and QuickBird imagery, acquired in different time. In this way it was possible to evaluate, compare each other and overlay the archaeological features recorded from each data source (aerial, satellite and lidar). Lidar data showed some interesting results. In particular, they allowed for identifying and recording differences in height on the ground produced by surface and shallow archaeological remains (the so-called shadow marks). Most of these features are visible also by the optical

  3. The course and the anatomo-functional relationships of the optic radiation: a combined study with 'post mortem' dissections and 'in vivo' direct electrical mapping.

    Science.gov (United States)

    Sarubbo, Silvio; De Benedictis, Alessandro; Milani, Paola; Paradiso, Beatrice; Barbareschi, Mattia; Rozzanigo, Umbero; Colarusso, Enzo; Tugnoli, Valeria; Farneti, Marco; Granieri, Enrico; Duffau, Hugues; Chioffi, Franco

    2015-01-01

    Even if different dissection, tractographic and connectivity studies provided pure anatomical evidences about the optic radiations (ORs), descriptions of both the anatomical structure and the anatomo-functional relationships of the ORs with the adjacent bundles were not reported. We propose a detailed anatomical and functional study with 'post mortem' dissections and 'in vivo' direct electrical stimulation (DES) of the OR, demonstrating also the relationships with the adjacent eloquent bundles in a neurosurgical 'connectomic' perspective. Six human hemispheres (three left, three right) were dissected after a modified Klingler's preparation. The anatomy of the white matter was analysed according to systematic and topographical surgical perspectives. The anatomical results were correlated to the functional responses collected during three resections of tumours guided by cortico-subcortical DES during awake procedures. We identified two groups of fibres forming the OR. The superior component runs along the lateral wall of the occipital horn, the trigone and the supero-medial wall of the temporal horn. The inferior component covers inferiorly the occipital horn and the trigone, the lateral wall of the temporal horn and arches antero-medially to form the Meyer's Loop. The inferior fronto-occipital fascicle (IFOF) covers completely the superior OR along its entire course, as confirmed by the subcortical DES. The inferior longitudinal fascicle runs in a postero-anterior and inferior direction, covering the superior OR posteriorly and the inferior OR anteriorly. The IFOF identification allows the preservation of the superior OR in the anterior temporal resection, avoiding post-operative complete hemianopia. The identification of the superior OR during the posterior temporal, inferior parietal and occipital resections leads to the preservation of the IFOF and of the eloquent functions it subserves. The accurate knowledge of the OR course and the relationships with the

  4. Indeterminacy of Spatiotemporal Cardiac Alternans

    CERN Document Server

    Zhao, Xiaopeng

    2007-01-01

    Cardiac alternans, a beat-to-beat alternation in action potential duration (at the cellular level) or in ECG morphology (at the whole heart level), is a marker of ventricular fibrillation, a fatal heart rhythm that kills hundreds of thousands of people in the US each year. Investigating cardiac alternans may lead to a better understanding of the mechanisms of cardiac arrhythmias and eventually better algorithms for the prediction and prevention of such dreadful diseases. In paced cardiac tissue, alternans develops under increasingly shorter pacing period. Existing experimental and theoretical studies adopt the assumption that alternans in homogeneous cardiac tissue is exclusively determined by the pacing period. In contrast, we find that, when calcium-driven alternans develops in cardiac fibers, it may take different spatiotemporal patterns depending on the pacing history. Because there coexist multiple alternans solutions for a given pacing period, the alternans pattern on a fiber becomes unpredictable. Usin...

  5. Case Report: Penetrating Cardiac Injury

    Directory of Open Access Journals (Sweden)

    Adem Grbolar

    2013-10-01

    Full Text Available Summary: Penetrating cardiac injurys caused by gunshots and penetrating tools have high mortality rates. The way of injury, how the cardiac area is effected and the presence of cardiac tamponadecauses mortality in different rates. However the better treatment quality of hospitals, increasingoperative techniques, and internel care unit quality has not been change during the years. Searching the literature, we want to present a 42 years old male patient whowas injured by knife and had a 1 cm skin wound on chest with cardiac tamponade. After sternotomy a 7 cm laseration was observed in heart. Cardioraphy was performed.

  6. Cardiac surgery for Kartagener syndrome.

    Science.gov (United States)

    Tkebuchava, T; von Segesser, L K; Niederhäuser, U; Bauersfeld, U; Turina, M

    1997-01-01

    Two patients (one girl, one boy) with Kartagener syndrome (situs inversus, bronchiectasis, sinusitis), despite pulmonary problems and associated congenital cardiac anomalies, were operated on at the ages of 4 years and 7 years, respectively. They had had previous palliative treatment at the age of 3 months and 1.3 years, respectively. Both postoperative periods after total correction were without significant complications. Long-term follow-up was available for 9 and 19 years, respectively, with no manifestations of heart insufficiency. Both patients are physically active, and neither requires cardiac medication. Patients with Kartagener syndrome and associated congenital cardiac anomalies can successfully undergo multiple cardiac operations with good long-term outcome.

  7. CALS Mapping

    DEFF Research Database (Denmark)

    Collin, Ib; Nielsen, Povl Holm; Larsen, Michael Holm

    1998-01-01

    To enhance the industrial applications of CALS, CALS Center Danmark has developed a cost efficient and transparent assessment, CALS Mapping, to uncover the potential of CALS - primarily dedicated to small and medium sized enterprises. The idea behind CALS Mapping is that the CALS State...... enterprise is, when applied in a given organisation modified with respect to the industry regarded, hence irrelevant measure parameters are eliminated to avoid redundancy. This assessment of CALS Mapping, quantify the CALS potential of an organisation with the purpose of providing decision support to the top...

  8. Silicon Optical Modulator Simulation

    Directory of Open Access Journals (Sweden)

    Soon Thor LIM

    2015-04-01

    Full Text Available We developed a way of predicting and analyzing high speed optical modulator. Our research adopted a bottom-up approach to consider high-speed optical links using an eye diagram. Our method leverages on modular mapping of electrical characteristics to optical characteristics, while attaining the required accuracy necessary for device footprint approaching sub-micron scales where electrical data distribution varies drastically. We calculate for the bias dependent phase shift (2pi/mm and loss (dB/mm for the optical modulator based on the real and imaginary part of complex effective indices. Subsequently, combine effectively both the electrical and optical profiles to construct the optical eye diagram which is the essential gist of signal integrity of such devices.

  9. Virtual cardioscopy: interactive endocardial visualization to guide RF cardiac ablation

    Science.gov (United States)

    Holmes, David R., III; Rettmann, Maryam E.; Cameron, Bruce M.; Camp, Jon J.; Robb, Richard A.

    2006-03-01

    Cardiac arrhythmias are a debilitating, potentially life threatening condition involving aberrant electrical activity in the heart which results in abnormal heart rhythm. Virtual cardioscopy can play an important role in minimally invasive treatment of cardiac arrhythmias. Second and third generation image-guidance systems are now available for the treatment of arrhythmias using RF ablation catheters. While these 3D tools provide useful information to the clinician, additional enhancements to the virtual cardioscopy display paradigm are critical for optimal therapy guidance. Based on input from clinical collaborators, several key visualization techniques have been developed to enhance the use of virtual cardioscopy during cardiac ablation procedures. We have identified, designed and incorporated several visual cues important to successful virtual cardioscopy. These features include the use of global reference maps, parametric mapping, and focused navigation and targeting using abnormal electro-physiologic activity. Our virtual cardioscopy system is designed for real-time use during RF cardiac ablation procedures. Several unique visualizations from our virtual cardioscopy system will be presented. Evaluation of the system with phantom and animal studies will be presented. This research is supported by grant EB002834 from the National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health.

  10. Nonlinear interpolation fractal classifier for multiple cardiac arrhythmias recognition

    Energy Technology Data Exchange (ETDEWEB)

    Lin, C.-H. [Department of Electrical Engineering, Kao-Yuan University, No. 1821, Jhongshan Rd., Lujhu Township, Kaohsiung County 821, Taiwan (China); Institute of Biomedical Engineering, National Cheng-Kung University, Tainan 70101, Taiwan (China)], E-mail: eechl53@cc.kyu.edu.tw; Du, Y.-C.; Chen Tainsong [Institute of Biomedical Engineering, National Cheng-Kung University, Tainan 70101, Taiwan (China)

    2009-11-30

    This paper proposes a method for cardiac arrhythmias recognition using the nonlinear interpolation fractal classifier. A typical electrocardiogram (ECG) consists of P-wave, QRS-complexes, and T-wave. Iterated function system (IFS) uses the nonlinear interpolation in the map and uses similarity maps to construct various data sequences including the fractal patterns of supraventricular ectopic beat, bundle branch ectopic beat, and ventricular ectopic beat. Grey relational analysis (GRA) is proposed to recognize normal heartbeat and cardiac arrhythmias. The nonlinear interpolation terms produce family functions with fractal dimension (FD), the so-called nonlinear interpolation function (NIF), and make fractal patterns more distinguishing between normal and ill subjects. The proposed QRS classifier is tested using the Massachusetts Institute of Technology-Beth Israel Hospital (MIT-BIH) arrhythmia database. Compared with other methods, the proposed hybrid methods demonstrate greater efficiency and higher accuracy in recognizing ECG signals.

  11. Detection of late radiation damage on left atrial fibrosis using cardiac late gadolinium enhancement magnetic resonance imaging

    Directory of Open Access Journals (Sweden)

    Y. Jessica Huang, PhD

    2016-04-01

    Conclusions: With LGE-MRI and 3-dimensional dose mapping on the treatment planning system, it is possible to define subclinical cardiac damage and distinguish intrinsic cardiac tissue change from radiation induced cardiac tissue damage. Imaging myocardial injury secondary to EBRT using MRI may be a useful modality to follow cardiac toxicity from EBRT and help identify individuals who are more susceptible to EBRT damage. LGE-MRI may provide essential information to identify early screening strategy for affected cancer survivors after EBRT treatment.

  12. Spatiotemporal Chaos Synchronization in Coupled Electrical-Optical Bistable Map Lattices System%耦合电光双稳映像格子模型时空混沌的同步

    Institute of Scientific and Technical Information of China (English)

    刘璐; 谷开慧; 孙晓冰

    2016-01-01

    The synchronization of spatiotemporal chaos is realized by using Function drive techniques in cou-pled electrical-optical bistable map lattice systems. We obtain a formula of deviation for two spatiotemporal cha-os systems. We draw Lyapunov exponent. Numerical simulations indicate that two spatiotemporal chaos system could be synchronized by using suitable parameter. We draw global error curve with reaction time. So,function driven method can be widely used in secure communication.%中函数驱动技术实现了耦合双稳映象格子模型的时空混沌同步。通过理论计算可以得到两个时空混沌系统的误差表达式。画出李雅普诺夫指数。数值模拟结果表明,采用适当的参数,可以将两个耦合双稳映象格子模型实现时空混沌的同步。画出整体误差随反应时间的变化曲线。因此,函数驱动的方法可广泛用于保密通信中。

  13. Finite Element Model of Cardiac Electrical Conduction.

    Science.gov (United States)

    Yin, John Zhihao

    1994-01-01

    In this thesis, we develop mathematical models to study electrical conduction of the heart. One important pattern of wave propagation of electrical excitation in the heart is reentry which is believed to be the underlying mechanism of some dangerous cardiac arhythmias such as ventricular tachycardia and ventricular fibrillation. We present in this thesis a new ionic channel model of the ventricular cardiac cell membrane to study the microscopic electrical properties of myocardium. We base our model on recent single channel experiment data and a simple physical diffusion model of the calcium channel. Our ionic channel model of myocardium has simpler differential equations and fewer parameters than previous models. Further more, our ionic channel model achieves better results in simulating the strength-interval curve when we connect the membrane patch model to form a one dimensional cardiac muscle strand. We go on to study a finite element model which uses multiple states and non-nearest neighbor interactions to include curvature and dispersion effects. We create a generalized lattice randomization to overcome the artifacts generated by the interaction between the local dynamics and the regularities of the square lattice. We show that the homogeneous model does not display spontaneous wavefront breakup in a reentrant wave propagation once the lattice artifacts have been smoothed out by lattice randomization with a randomization scale larger than the characteristic length of the interaction. We further develop a finite 3-D 3-state heart model which employs a probability interaction rule. This model is applied to the simulation of Body Surface Laplacian Mapping (BSLM) using a cylindrical volume conductor as the torso model. We show that BSLM has a higher spatial resolution than conventional mapping methods in revealing the underlying electrical activities of the heart. The results of these studies demonstrate that mathematical modeling and computer simulation are very

  14. Cardiac elastography: detecting pathological changes in myocardium tissues

    Science.gov (United States)

    Konofagou, Elisa E.; Harrigan, Timothy; Solomon, Scott

    2003-05-01

    Estimation of the mechanical properties of the cardiac muscle has been shown to play a crucial role in the detection of cardiovascular disease. Elastography was recently shown feasible on RF cardiac data in vivo. In this paper, the role of elastography in the detection of ischemia/infarct is explored with simulations and in vivo experiments. In finite-element simulations of a portion of the cardiac muscle containing an infarcted region, the cardiac cycle was simulated with successive compressive and tensile strains ranging between -30% and 20%. The incremental elastic modulus was also mapped uisng adaptive methods. We then demonstrated this technique utilizing envelope-detected sonographic data (Hewlett-Packard Sonos 5500) in a patient with a known myocardial infarction. In cine-loop and M-Mode elastograms from both normal and infarcted regions in simulations and experiments, the infarcted region was identifed by the up to one order of magnitude lower incremental axial displacements and strains, and higher modulus. Information on motion, deformation and mechanical property should constitute a unique tool for noninvasive cardiac diagnosis.

  15. Mapping VADEMECUM

    OpenAIRE

    1992-01-01

    The work plan for the implementation of the Convention on Long-Range Transboundary Air Pollution under the UN Economic Commission for Europe (UN ECE) includes the production of maps of critical loads, critical levels, and exceedances as a basis for developing potential abatement strategies for sulphur and nitrogen. This Vademecum is designed to provide guidance to those responsible for calculating and mapping critical loads, critical levels, and exceedances on a national or regional scale. Th...

  16. CSI cardiac prevent 2015

    Directory of Open Access Journals (Sweden)

    S Ramakrishnan

    2015-01-01

    Full Text Available The CSI Cardiac Prevent 2015 was held at Hotel Taj Palace, New Delhi, on September 25-27, 2015. The major challenge was to create interest among cardiologists and physicians on preventive cardiology, a neglected area. The theme of the conference was "Innovations in Heart Disease Prevention.′′ This conference included "CSI at WHF Roadmap Workshop, Inauguration Ceremony, scientific program, plenary sessions, Nursing/Dietician track, Industry Exhibition, Social Events," Great India blood pressure Survey, and CSI Smart Heart App. A total of 848 delegates/faculties attended this conference against a total of 1140 people registered for the meeting.

  17. Present Researching Approaches and Future Prospects for Treatment of Cardiac Diseases-Integrative Medicine

    Institute of Scientific and Technical Information of China (English)

    Yan Feng; Hao Xu; Yi-Xin Wang; Li-Ping Ma; Da-Zhuo Shi

    2015-01-01

    The pathogenesis of cardiac diseases is very complex and involved in many gene transcription and protein expression. How to effectively treat the diseases has become the hotspot of modern medicine. Accumulating evidences over the past decades on integrative medicine have shown us hopeful future prospects. With the development of modern biomedicine, such as sketch mapping genomic sequence, functional genomics, proteomics and pharmacogenetics, more advanced techniques could be applied in elucidating the possibly complicated biological networks, or complex pathological and physiological mechanisms underlying cardiac diseases, by which integrative medicine will also bring out some new and more effective strategies in the treatment of cardiac diseases.

  18. Human embryonic and fetal mesenchymal stem cells differentiate toward three different cardiac lineages in contrast to their adult counterparts.

    Science.gov (United States)

    Ramkisoensing, Arti A; Pijnappels, Daniël A; Askar, Saïd F A; Passier, Robert; Swildens, Jim; Goumans, Marie José; Schutte, Cindy I; de Vries, Antoine A F; Scherjon, Sicco; Mummery, Christine L; Schalij, Martin J; Atsma, Douwe E

    2011-01-01

    Mesenchymal stem cells (MSCs) show unexplained differences in differentiation potential. In this study, differentiation of human (h) MSCs derived from embryonic, fetal and adult sources toward cardiomyocytes, endothelial and smooth muscle cells was investigated. Labeled hMSCs derived from embryonic stem cells (hESC-MSCs), fetal umbilical cord, bone marrow, amniotic membrane and adult bone marrow and adipose tissue were co-cultured with neonatal rat cardiomyocytes (nrCMCs) or cardiac fibroblasts (nrCFBs) for 10 days, and also cultured under angiogenic conditions. Cardiomyogenesis was assessed by human-specific immunocytological analysis, whole-cell current-clamp recordings, human-specific qRT-PCR and optical mapping. After co-culture with nrCMCs, significantly more hESC-MSCs than fetal hMSCs stained positive for α-actinin, whereas adult hMSCs stained negative. Furthermore, functional cardiomyogenic differentiation, based on action potential recordings, was shown to occur, but not in adult hMSCs. Of all sources, hESC-MSCs expressed most cardiac-specific genes. hESC-MSCs and fetal hMSCs contained significantly higher basal levels of connexin43 than adult hMSCs and co-culture with nrCMCs increased expression. After co-culture with nrCFBs, hESC-MSCs and fetal hMSCs did not express α-actinin and connexin43 expression was decreased. Conduction velocity (CV) in co-cultures of nrCMCs and hESC-MSCs was significantly higher than in co-cultures with fetal or adult hMSCs. In angiogenesis bioassays, only hESC-MSCs and fetal hMSCs were able to form capillary-like structures, which stained for smooth muscle and endothelial cell markers.Human embryonic and fetal MSCs differentiate toward three different cardiac lineages, in contrast to adult MSCs. Cardiomyogenesis is determined by stimuli from the cellular microenvironment, where connexin43 may play an important role.

  19. A multiresolution restoration method for cardiac SPECT

    Science.gov (United States)

    Franquiz, Juan Manuel

    Single-photon emission computed tomography (SPECT) is affected by photon attenuation and image blurring due to Compton scatter and geometric detector response. Attenuation correction is important to increase diagnostic accuracy of cardiac SPECT. However, in attenuation-corrected scans, scattered photons from radioactivity in the liver could produce a spillover of counts into the inferior myocardial wall. In the clinical setting, blurring effects could be compensated by restoration with Wiener and Metz filters. Inconveniences of these procedures are that the Wiener filter depends upon the power spectra of the object image and noise, which are unknown, while Metz parameters have to be optimized by trial and error. This research develops an alternative restoration procedure based on a multiresolution denoising and regularization algorithm. It was hypothesized that this representation leads to a more straightforward and automatic restoration than conventional filters. The main objective of the research was the development and assessment of the multiresolution algorithm for compensating the liver spillover artifact. The multiresolution algorithm decomposes original SPECT projections into a set of sub-band frequency images. This allows a simple denoising and regularization procedure by discarding high frequency channels and performing inversion only in low and intermediate frequencies. The method was assessed in bull's eye polar maps and short- axis attenuation-corrected reconstructions of a realistic cardiac-chest phantom with a custom-made liver insert and different 99mTc liver-to-heart activity ratios. Inferior myocardial defects were simulated in some experiments. The cardiac phantom in free air was considered as the gold standard reference. Quantitative analysis was performed by calculating contrast of short- axis slices and the normalized chi-square measure, defect size and mean and standard deviation of polar map counts. The performance of the multiresolution

  20. Pneumothorax in cardiac pacing

    DEFF Research Database (Denmark)

    Kirkfeldt, Rikke Esberg; Johansen, Jens Brock; Nohr, Ellen Aagaard;

    2012-01-01

    AIM: To identify risk factors for pneumothorax treated with a chest tube after cardiac pacing device implantation in a population-based cohort.METHODS AND RESULTS: A nationwide cohort study was performed based on data on 28 860 patients from the Danish Pacemaker Register, which included all Danish...... patients who received their first pacemaker (PM) or cardiac resynchronization device from 1997 to 2008. Multiple logistic regression was used to estimate adjusted odds ratios (aOR) with 95% confidence intervals for the association between risk factors and pneumothorax treated with a chest tube. The median...... age was 77 years (25th and 75th percentile: 69-84) and 55% were male (n = 15 785). A total of 190 patients (0.66%) were treated for pneumothorax, which was more often in women [aOR 1.9 (1.4-2.6)], and in patients with age >80 years [aOR 1.4 (1.0-1.9)], a prior history of chronic obstructive pulmonary...