WorldWideScience

Sample records for open access database

  1. Internet Based Open Access Crystallographic Databases

    Science.gov (United States)

    Upreti, Girish; Seipel, Bjoern; Harvey, Morgan; Garrick, Will; Moeck, Peter

    2006-05-01

    Two freely accessible crystallographic databases are discussed: the Crystallographic Open Database (COD, http://crystallography.net) which contains over 37,000 crystal structures, and the Nano-Crystallography Database (NCD, http://nanocrystallography.research.pdx.edu) which we recently started to support image-based nanocrystallography and (nano) materials science education. Both databases collect crystallographic relevant information in a standardized format; the Crystallographic Information File (CIF). CIF is the standard file format adopted by the International Union of Crystallography (http://iucr.org) for the archiving and distribution of crystallographic information. A subset of the COD, the Predicted Crystallographic Online Database, allows for 3D structural displays of structural polyhedra and wireframes of approximately 2,600 entries. Since electron microscopist are interested in simple, yet technologically important materials, the crystallographic information for those materials will be included in our database. At our NCD site, entries in the COD and the NCD can be visualized in three dimensions (3D) along with (2D) lattice fringe fingerprints plots. The latter supports the identification of unknown nanocrystal phases from high-resolution transmission electron microscopy (HRTEM) images. Morphological crystal information from the database ``Bestimmungstabellen f"ur Kristalle/ ???????????? ??????????,'' (A.K. Boldyrew and W.W. Doliwo-Dobrowolsky, Zentrales Wissenschaftlichers Institute der Geologie und Sch"urfung, Leningrad/ Moscow, 1937/1939) will also be included in the NCD to support image-based nanocrystallography in 3D.

  2. An open access thyroid ultrasound image database

    Science.gov (United States)

    Pedraza, Lina; Vargas, Carlos; Narváez, Fabián.; Durán, Oscar; Muñoz, Emma; Romero, Eduardo

    2015-01-01

    Computer aided diagnosis systems (CAD) have been developed to assist radiologists in the detection and diagnosis of abnormalities and a large number of pattern recognition techniques have been proposed to obtain a second opinion. Most of these strategies have been evaluated using different datasets making their performance incomparable. In this work, an open access database of thyroid ultrasound images is presented. The dataset consists of a set of B-mode Ultrasound images, including a complete annotation and diagnostic description of suspicious thyroid lesions by expert radiologists. Several types of lesions as thyroiditis, cystic nodules, adenomas and thyroid cancers were included while an accurate lesion delineation is provided in XML format. The diagnostic description of malignant lesions was confirmed by biopsy. The proposed new database is expected to be a resource for the community to assess different CAD systems.

  3. Organic materials database: An open-access online database for data mining

    Science.gov (United States)

    Geilhufe, R. Matthias; Balatsky, Alexander V.

    2017-01-01

    We present an organic materials database (OMDB) hosting thousands of Kohn-Sham electronic band structures, which is freely accessible online at http://omdb.diracmaterials.org. The OMDB focus lies on electronic structure, density of states and other properties for purely organic and organometallic compounds that are known to date. The electronic band structures are calculated using density functional theory for the crystal structures contained in the Crystallography Open Database. The OMDB web interface allows users to retrieve materials with specified target properties using non-trivial queries about their electronic structure. We illustrate the use of the OMDB and how it can become an organic part of search and prediction of novel functional materials via data mining techniques. As a specific example, we provide data mining results for metals and semiconductors, which are known to be rare in the class of organic materials. PMID:28182744

  4. Organic materials database: An open-access online database for data mining.

    Science.gov (United States)

    Borysov, Stanislav S; Geilhufe, R Matthias; Balatsky, Alexander V

    2017-01-01

    We present an organic materials database (OMDB) hosting thousands of Kohn-Sham electronic band structures, which is freely accessible online at http://omdb.diracmaterials.org. The OMDB focus lies on electronic structure, density of states and other properties for purely organic and organometallic compounds that are known to date. The electronic band structures are calculated using density functional theory for the crystal structures contained in the Crystallography Open Database. The OMDB web interface allows users to retrieve materials with specified target properties using non-trivial queries about their electronic structure. We illustrate the use of the OMDB and how it can become an organic part of search and prediction of novel functional materials via data mining techniques. As a specific example, we provide data mining results for metals and semiconductors, which are known to be rare in the class of organic materials.

  5. Mars-Learning AN Open Access Educational Database

    Science.gov (United States)

    Kolankowski, S. M.; Fox, P. A.

    2016-12-01

    Schools across America have begun focusing more and more on science and technology, giving their students greater opportunities to learn about planetary science and engineering. With the development of rovers and advanced scientific instrumentation, we are learning about Mars' geologic history on a daily basis. These discoveries are crucial to our understanding of Earth and our solar system. By bringing these findings into the classroom, students can learn key concepts about Earth and Planetary sciences while focusing on a relevant current event. However, with an influx of readily accessible information, it is difficult for educators and students to find accurate and relevant material. Mars-Learning seeks to unify these discoveries and resources. This site will provide links to educational resources, software, and blogs with a focus on Mars. Activities will be grouped by grade for the middle and high school levels. Programs and software will be labeled, open access, free, or paid to ensure users have the proper tools to get the information they need. For new educators or those new to the subject, relevant blogs and pre-made lesson plans will be available so instructors can ensure their success. The expectation of Mars-Learning is to provide stress-free access to learning materials that falls within a wide range of curriculum. By providing a thorough and encompassing site, Mars-Learning hopes to further our understanding of the Red Planet and equip students with the knowledge and passion to continue this research.

  6. Open-access databases as unprecedented resources and drivers of cultural change in fisheries science

    Energy Technology Data Exchange (ETDEWEB)

    McManamay, Ryan A [ORNL; Utz, Ryan [National Ecological Observatory Network

    2014-01-01

    Open-access databases with utility in fisheries science have grown exponentially in quantity and scope over the past decade, with profound impacts to our discipline. The management, distillation, and sharing of an exponentially growing stream of open-access data represents several fundamental challenges in fisheries science. Many of the currently available open-access resources may not be universally known among fisheries scientists. We therefore introduce many national- and global-scale open-access databases with applications in fisheries science and provide an example of how they can be harnessed to perform valuable analyses without additional field efforts. We also discuss how the development, maintenance, and utilization of open-access data are likely to pose technical, financial, and educational challenges to fisheries scientists. Such cultural implications that will coincide with the rapidly increasing availability of free data should compel the American Fisheries Society to actively address these problems now to help ease the forthcoming cultural transition.

  7. Strategies for the sustainability of online open-access biodiversity databases

    OpenAIRE

    Costello, Mark J.; Appeltans, Ward; Bailly, Nicolas; Berendsohn, Walter G.; de Jong, Yde; Edwards, Martin; Froese, Rainer; Huettmann, Falk; Los, Wouter; Mees, Jan; Segers, Hendrik; Bisby, Frank A.

    2014-01-01

    Highlights: • Open-access online scholarly biodiversity databases are threatened by a lack of funding and institutional support. • Strategic approaches to aid sustainability are summarised. • Issues include database coverage, quality, uniqueness; clarity of Intellectual Property Rights, ownership and governance. • Long-term support from institutions and scientists is easier for high-quality, comprehensive, prestigious global databases. • Larger multi-partner governed databases ...

  8. Open-Access Metabolomics Databases for Natural Product Research: Present Capabilities and Future Potential

    Science.gov (United States)

    Johnson, Sean R.; Lange, Bernd Markus

    2015-01-01

    Various databases have been developed to aid in assigning structures to spectral peaks observed in metabolomics experiments. In this review article, we discuss the utility of currently available open-access spectral and chemical databases for natural products discovery. We also provide recommendations on how the research community can contribute to further improvements. PMID:25789275

  9. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

    DEFF Research Database (Denmark)

    Portales-Casamar, Elodie; Thongjuea, Supat; Kwon, Andrew T

    2009-01-01

    JASPAR (http://jaspar.genereg.net) is the leading open-access database of matrix profiles describing the DNA-binding patterns of transcription factors (TFs) and other proteins interacting with DNA in a sequence-specific manner. Its fourth major release is the largest expansion of the core database...

  10. For 481 biomedical open access journals, articles are not searchable in the Directory of Open Access Journals nor in conventional biomedical databases

    DEFF Research Database (Denmark)

    Liljekvist, Mads Svane; Andresen, Kristoffer; Pommergaard, Hans-Christian

    2015-01-01

    Background. Open access (OA) journals allows access to research papers free of charge to the reader. Traditionally, biomedical researchers use databases like MEDLINE and EMBASE to discover new advances. However, biomedical OA journals might not fulfill such databases' criteria, hindering...... dissemination. The Directory of Open Access Journals (DOAJ) is a database exclusively listing OA journals. The aim of this study was to investigate DOAJ's coverage of biomedical OA journals compared with the conventional biomedical databases. Methods. Information on all journals listed in four conventional...

  11. SciELO, Scientific Electronic Library Online, a Database of Open Access Journals

    Science.gov (United States)

    Meneghini, Rogerio

    2013-01-01

    This essay discusses SciELO, a scientific journal database operating in 14 countries. It covers over 1000 journals providing open access to full text and table sets of scientometrics data. In Brazil it is responsible for a collection of nearly 300 journals, selected along 15 years as the best Brazilian periodicals in natural and social sciences.…

  12. Toward an open-access global database for mapping, control, and surveillance of neglected tropical diseases

    DEFF Research Database (Denmark)

    Hürlimann, Eveline; Schur, Nadine; Boutsika, Konstantina

    2011-01-01

    for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken...

  13. Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration.

    Science.gov (United States)

    Gražulis, Saulius; Daškevič, Adriana; Merkys, Andrius; Chateigner, Daniel; Lutterotti, Luca; Quirós, Miguel; Serebryanaya, Nadezhda R; Moeck, Peter; Downs, Robert T; Le Bail, Armel

    2012-01-01

    Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known 'small molecule / small to medium sized unit cell' crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ~150,000 structures, offering basic search capabilities and the possibility to download the whole database, or parts thereof using a variety of standard open communication protocols. A newly developed website provides capabilities for all registered users to deposit published and so far unpublished structures as personal communications or pre-publication depositions. Such a setup enables extension of the COD database by many users simultaneously. This increases the possibilities for growth of the COD database, and is the first step towards establishing a world wide Internet-based collaborative platform dedicated to the collection and curation of structural knowledge.

  14. Open access

    NARCIS (Netherlands)

    Valkenburg, P.M.

    2015-01-01

    Open access week Van 19 tot en met 25 oktober 2015 vond wereldwijd de Open Access Week plaats. Tijdens deze week werden er over de hele wereld evenementen georganiseerd waar open access een rol speelt. Ook in Nederland zijn er diverse symposia, workshops en debatten georganiseerd zoals het debat in

  15. Toward an open-access global database for mapping, control, and surveillance of neglected tropical diseases.

    Directory of Open Access Journals (Sweden)

    Eveline Hürlimann

    2011-12-01

    Full Text Available BACKGROUND: After many years of general neglect, interest has grown and efforts came under way for the mapping, control, surveillance, and eventual elimination of neglected tropical diseases (NTDs. Disease risk estimates are a key feature to target control interventions, and serve as a benchmark for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken toward the development of such a database that can be employed for spatial disease risk modeling and control of NTDs. METHODOLOGY: With an emphasis on schistosomiasis in Africa, we systematically searched the literature (peer-reviewed journals and 'grey literature', contacted Ministries of Health and research institutions in schistosomiasis-endemic countries for location-specific prevalence data and survey details (e.g., study population, year of survey and diagnostic techniques. The data were extracted, georeferenced, and stored in a MySQL database with a web interface allowing free database access and data management. PRINCIPAL FINDINGS: At the beginning of 2011, our database contained more than 12,000 georeferenced schistosomiasis survey locations from 35 African countries available under http://www.gntd.org. Currently, the database is expanded to a global repository, including a host of other NTDs, e.g. soil-transmitted helminthiasis and leishmaniasis. CONCLUSIONS: An open-access, spatially explicit NTD database offers unique opportunities for disease risk modeling, targeting control interventions, disease monitoring, and surveillance. Moreover, it allows for detailed geostatistical analyses of disease distribution in space and time. With an initial focus on schistosomiasis in Africa, we demonstrate the proof-of-concept that the establishment

  16. Open Access

    Science.gov (United States)

    Suber, Peter

    2012-01-01

    The Internet lets us share perfect copies of our work with a worldwide audience at virtually no cost. We take advantage of this revolutionary opportunity when we make our work "open access": digital, online, free of charge, and free of most copyright and licensing restrictions. Open access is made possible by the Internet and copyright-holder…

  17. Open Access

    Science.gov (United States)

    Suber, Peter

    2012-01-01

    The Internet lets us share perfect copies of our work with a worldwide audience at virtually no cost. We take advantage of this revolutionary opportunity when we make our work "open access": digital, online, free of charge, and free of most copyright and licensing restrictions. Open access is made possible by the Internet and copyright-holder…

  18. Respiratory cancer database: An open access database of respiratory cancer gene and miRNA.

    Science.gov (United States)

    Choubey, Jyotsna; Choudhari, Jyoti Kant; Patel, Ashish; Verma, Mukesh Kumar

    2017-01-01

    Respiratory cancer database (RespCanDB) is a genomic and proteomic database of cancer of respiratory organ. It also includes the information of medicinal plants used for the treatment of various respiratory cancers with structure of its active constituents as well as pharmacological and chemical information of drug associated with various respiratory cancers. Data in RespCanDB has been manually collected from published research article and from other databases. Data has been integrated using MySQL an object-relational database management system. MySQL manages all data in the back-end and provides commands to retrieve and store the data into the database. The web interface of database has been built in ASP. RespCanDB is expected to contribute to the understanding of scientific community regarding respiratory cancer biology as well as developments of new way of diagnosing and treating respiratory cancer. Currently, the database consist the oncogenomic information of lung cancer, laryngeal cancer, and nasopharyngeal cancer. Data for other cancers, such as oral and tracheal cancers, will be added in the near future. The URL of RespCanDB is http://ridb.subdic-bioinformatics-nitrr.in/.

  19. Toward an open-access global database for mapping, control, and surveillance of neglected tropical diseases

    DEFF Research Database (Denmark)

    Hürlimann, Eveline; Schur, Nadine; Boutsika, Konstantina;

    2011-01-01

    After many years of general neglect, interest has grown and efforts came under way for the mapping, control, surveillance, and eventual elimination of neglected tropical diseases (NTDs). Disease risk estimates are a key feature to target control interventions, and serve as a benchmark...... for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken...

  20. Respiratory cancer database: An open access database of respiratory cancer gene and miRNA

    Directory of Open Access Journals (Sweden)

    Jyotsna Choubey

    2017-01-01

    Results and Conclusions: RespCanDB is expected to contribute to the understanding of scientific community regarding respiratory cancer biology as well as developments of new way of diagnosing and treating respiratory cancer. Currently, the database consist the oncogenomic information of lung cancer, laryngeal cancer, and nasopharyngeal cancer. Data for other cancers, such as oral and tracheal cancers, will be added in the near future. The URL of RespCanDB is http://ridb.subdic-bioinformatics-nitrr.in/.

  1. Open access

    CERN Document Server

    Suber, Peter

    2012-01-01

    The Internet lets us share perfect copies of our work with a worldwide audience at virtually no cost. We take advantage of this revolutionary opportunity when we make our work "open access": digital, online, free of charge, and free of most copyright and licensing restrictions. Open access is made possible by the Internet and copyright-holder consent, and many authors, musicians, filmmakers, and other creators who depend on royalties are understandably unwilling to give their consent. But for 350 years, scholars have written peer-reviewed journal articles for impact, not for money, and are free to consent to open access without losing revenue. In this concise introduction, Peter Suber tells us what open access is and isn't, how it benefits authors and readers of research, how we pay for it, how it avoids copyright problems, how it has moved from the periphery to the mainstream, and what its future may hold. Distilling a decade of Suber's influential writing and thinking about open access, this is the indispe...

  2. MetaboLights: An Open-Access Database Repository for Metabolomics Data.

    Science.gov (United States)

    Kale, Namrata S; Haug, Kenneth; Conesa, Pablo; Jayseelan, Kalaivani; Moreno, Pablo; Rocca-Serra, Philippe; Nainala, Venkata Chandrasekhar; Spicer, Rachel A; Williams, Mark; Li, Xuefei; Salek, Reza M; Griffin, Julian L; Steinbeck, Christoph

    2016-03-24

    MetaboLights is the first general purpose, open-access database repository for cross-platform and cross-species metabolomics research at the European Bioinformatics Institute (EMBL-EBI). Based upon the open-source ISA framework, MetaboLights provides Metabolomics Standard Initiative (MSI) compliant metadata and raw experimental data associated with metabolomics experiments. Users can upload their study datasets into the MetaboLights Repository. These studies are then automatically assigned a stable and unique identifier (e.g., MTBLS1) that can be used for publication reference. The MetaboLights Reference Layer associates metabolites with metabolomics studies in the archive and is extensively annotated with data fields such as structural and chemical information, NMR and MS spectra, target species, metabolic pathways, and reactions. The database is manually curated with no specific release schedules. MetaboLights is also recommended by journals for metabolomics data deposition. This unit provides a guide to using MetaboLights, downloading experimental data, and depositing metabolomics datasets using user-friendly submission tools. Copyright © 2016 John Wiley & Sons, Inc.

  3. Proyecto AVIS: a Spanish open access bird database available for research

    Directory of Open Access Journals (Sweden)

    Sara Varela

    2014-12-01

    Full Text Available Proyecto AVIS1 is an open access citizen science database that stores information collected by amateur ornithologists about bird occurrences and abundance in Spain. Proyecto AVIS was launched in 2005 and today stores data from 415 species (ca. 90% of bird species in Spain; it covers 30% of the Spanish territory, including the Canary Islands in the Atlantic Ocean and the Balearic Islands in the Mediterranean Sea. Here, we acknowledge the work of all the volunteers that have gathered bird records in the field and uploaded these observations over the last 10 years, and introduce Proyecto AVIS to a broader community of biogeographers and macroecologists to promote its use for research. 

  4. The Zebrafish Neurophenome Database (ZND): a dynamic open-access resource for zebrafish neurophenotypic data.

    Science.gov (United States)

    Kyzar, Evan; Zapolsky, Ivan; Green, Jeremy; Gaikwad, Siddharth; Pham, Mimi; Collins, Christopher; Roth, Andrew; Stewart, Adam Michael; St-Pierre, Paul; Hirons, Budd; Kalueff, Allan V

    2012-03-01

    Zebrafish (Danio rerio) are widely used in neuroscience research, where their utility as a model organism is rapidly expanding. Low cost, ease of experimental manipulations, and sufficient behavioral complexity make zebrafish a valuable tool for high-throughput studies in biomedicine. To complement the available repositories for zebrafish genetic information, there is a growing need for the collection of zebrafish neurobehavioral and neurological phenotypes. For this, we are establishing the Zebrafish Neurophenome Database (ZND; www.tulane.edu/∼znpindex/search ) as a new dynamic online open-access data repository for behavioral and related physiological data. ZND, currently focusing on adult zebrafish, combines zebrafish neurophenotypic data with a simple, easily searchable user interface, which allow scientists to view and compare results obtained by other laboratories using various treatments in different testing paradigms. As a developing community effort, ZND is expected to foster innovative research using zebrafish by federating the growing body of zebrafish neurophenotypic data.

  5. Asking new questions with old data: The Centralized Open-Access Rehabilitation database for Stroke (SCOAR.

    Directory of Open Access Journals (Sweden)

    Keith Lohse

    2016-09-01

    Full Text Available Background: This paper introduces a tool for streamlining data integration in rehabilitation science, the Centralized Open-Access Rehabilitation database for Stroke (SCOAR, which allows researchers to quickly visualize relationships among variables, efficiently share data, generate hypotheses, and enhance clinical trial design. Methods: Bibliographic databases were searched according to inclusion criteria leaving 2,892 titles that were further screened to 514 manuscripts to be screened by full text, leaving 215 randomized controlled trials in the database (489 independent groups representing 12,847 patients. Demographic, methodological, and statistical data were extracted by independent coders and entered into SCOAR. Results: Trial data came from 114 locations in 27 different countries and represented patients with a wide range of ages, 62 yr 41; 85, (shown as median range and at various stages of recovery following their stroke, 141 d 1; 3372. There was considerable variation in the dose of therapy that patients received, 20 h 0; 221, over interventions of different durations, 28 d 10; 365. There was also a lack of common data elements (CDEs across trials, but this lack of CDEs was most pronounced for baseline assessments of patient impairment and severity of stroke. Conclusions: Data integration across hundreds of RCTs allows clinicians and researchers to quickly visualize data from the history of the field and lays the foundation for making SCOAR a living database to which researchers can upload new data as trial results are published. SCOAR is a useful tool for clinicians and researchers that will facilitate data visualization, data sharing, the finding of relevant past studies, and the design of clinical trials by enabling more accurate and comprehensive power analyses. Furthermore, these data speak to the need for CDEs specific to stroke rehabilitation in randomized controlled trials.PROSPERO# CRD4201409010

  6. For 481 biomedical open access journals, articles are not searchable in the Directory of Open Access Journals nor in conventional biomedical databases.

    Science.gov (United States)

    Liljekvist, Mads Svane; Andresen, Kristoffer; Pommergaard, Hans-Christian; Rosenberg, Jacob

    2015-01-01

    Background. Open access (OA) journals allows access to research papers free of charge to the reader. Traditionally, biomedical researchers use databases like MEDLINE and EMBASE to discover new advances. However, biomedical OA journals might not fulfill such databases' criteria, hindering dissemination. The Directory of Open Access Journals (DOAJ) is a database exclusively listing OA journals. The aim of this study was to investigate DOAJ's coverage of biomedical OA journals compared with the conventional biomedical databases. Methods. Information on all journals listed in four conventional biomedical databases (MEDLINE, PubMed Central, EMBASE and SCOPUS) and DOAJ were gathered. Journals were included if they were (1) actively publishing, (2) full OA, (3) prospectively indexed in one or more database, and (4) of biomedical subject. Impact factor and journal language were also collected. DOAJ was compared with conventional databases regarding the proportion of journals covered, along with their impact factor and publishing language. The proportion of journals with articles indexed by DOAJ was determined. Results. In total, 3,236 biomedical OA journals were included in the study. Of the included journals, 86.7% were listed in DOAJ. Combined, the conventional biomedical databases listed 75.0% of the journals; 18.7% in MEDLINE; 36.5% in PubMed Central; 51.5% in SCOPUS and 50.6% in EMBASE. Of the journals in DOAJ, 88.7% published in English and 20.6% had received impact factor for 2012 compared with 93.5% and 26.0%, respectively, for journals in the conventional biomedical databases. A subset of 51.1% and 48.5% of the journals in DOAJ had articles indexed from 2012 and 2013, respectively. Of journals exclusively listed in DOAJ, one journal had received an impact factor for 2012, and 59.6% of the journals had no content from 2013 indexed in DOAJ. Conclusions. DOAJ is the most complete registry of biomedical OA journals compared with five conventional biomedical databases

  7. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

    DEFF Research Database (Denmark)

    Mathelier, Anthony; Fornes, Oriol; Arenillas, David J;

    2016-01-01

    JASPAR (http://jaspar.genereg.net) is an open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple species in six taxonomic groups. For this 2016 release, we...

  8. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

    DEFF Research Database (Denmark)

    Bryne, J.C.; Valen, E.; Tang, M.H.E.

    2008-01-01

    JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR...

  9. MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.

    Science.gov (United States)

    Jeffryes, James G; Colastani, Ricardo L; Elbadawi-Sidhu, Mona; Kind, Tobias; Niehaus, Thomas D; Broadbelt, Linda J; Hanson, Andrew D; Fiehn, Oliver; Tyo, Keith E J; Henry, Christopher S

    2015-01-01

    In spite of its great promise, metabolomics has proven difficult to execute in an untargeted and generalizable manner. Liquid chromatography-mass spectrometry (LC-MS) has made it possible to gather data on thousands of cellular metabolites. However, matching metabolites to their spectral features continues to be a bottleneck, meaning that much of the collected information remains uninterpreted and that new metabolites are seldom discovered in untargeted studies. These challenges require new approaches that consider compounds beyond those available in curated biochemistry databases. Here we present Metabolic In silico Network Expansions (MINEs), an extension of known metabolite databases to include molecules that have not been observed, but are likely to occur based on known metabolites and common biochemical reactions. We utilize an algorithm called the Biochemical Network Integrated Computational Explorer (BNICE) and expert-curated reaction rules based on the Enzyme Commission classification system to propose the novel chemical structures and reactions that comprise MINE databases. Starting from the Kyoto Encyclopedia of Genes and Genomes (KEGG) COMPOUND database, the MINE contains over 571,000 compounds, of which 93% are not present in the PubChem database. However, these MINE compounds have on average higher structural similarity to natural products than compounds from KEGG or PubChem. MINE databases were able to propose annotations for 98.6% of a set of 667 MassBank spectra, 14% more than KEGG alone and equivalent to PubChem while returning far fewer candidates per spectra than PubChem (46 vs. 1715 median candidates). Application of MINEs to LC-MS accurate mass data enabled the identity of an unknown peak to be confidently predicted. MINE databases are freely accessible for non-commercial use via user-friendly web-tools at http://minedatabase.mcs.anl.gov and developer-friendly APIs. MINEs improve metabolomics peak identification as compared to general chemical

  10. Support open access publishing

    DEFF Research Database (Denmark)

    Ekstrøm, Jeannette

    2013-01-01

    Projektet Support Open Access Publishing har til mål at få opdateret Sherpa/Romeo databasen (www.sherpa.ac.uk/romeo) med fagligt relevante, danske tidsskrifter. Projektet skal endvidere undersøge mulighederne for at få udviklet en database, hvor forskere på tværs af relevante tidsskriftsinformati......Projektet Support Open Access Publishing har til mål at få opdateret Sherpa/Romeo databasen (www.sherpa.ac.uk/romeo) med fagligt relevante, danske tidsskrifter. Projektet skal endvidere undersøge mulighederne for at få udviklet en database, hvor forskere på tværs af relevante...... tidsskriftsinformationer (faglig disciplin, BFI niveau, Impact Factor, Open Access) vil kunne danne sig et hurtigt overblik, for derved at kunne træffe et kvalificeret valg om, hvor og hvordan man skal publicere sine forskningsresultater....

  11. Open access database of raw ultrasonic signals acquired from malignant and benign breast lesions.

    Science.gov (United States)

    Piotrzkowska-Wróblewska, Hanna; Dobruch-Sobczak, Katarzyna; Byra, Michał; Nowicki, Andrzej

    2017-08-31

    The aim of this paper is to provide access to a database consisting of the raw radio-frequency ultrasonic echoes acquired from malignant and benign breast lesions. The database is freely available for study and signal analysis. The ultrasonic radio-frequency echoes were recorded from breast focal lesions of patients of the Institute of Oncology in Warsaw. The data were collected between 11/2013 and 10/2015. Patients were examined by a radiologist with 18 yr' experience in the ultrasonic examination of breast lesions. The set of data includes scans from 52 malignant and 48 benign breast lesions recorded in a group of 78 women. For each lesion, two individual orthogonal scans from the pathological region were acquired with the Ultrasonix SonixTouch Research ultrasound scanner using the L14-5/38 linear array transducer. All malignant lesions were histologically assessed by core needle biopsy. In the case of benign lesions, part of them was histologically assessed and another part was observed over a 2-year period. The radio-frequency echoes were stored in Matlab file format. For each scan, the region of interest was provided to correctly indicate the lesion area. Moreover, for each lesion, the BI-RADS category and the lesion class were included. Two code examples of data manipulation are presented. The data can be downloaded via the Zenodo repository (https://doi.org/10.5281/zenodo.545928) or the website http://bluebox.ippt.gov.pl/~hpiotrzk. The database can be used to test quantitative ultrasound techniques and ultrasound image processing algorithms, or to develop computer-aided diagnosis systems. © 2017 American Association of Physicists in Medicine.

  12. Open Geoscience Database

    Science.gov (United States)

    Bashev, A.

    2012-04-01

    Currently there is an enormous amount of various geoscience databases. Unfortunately the only users of the majority of the databases are their elaborators. There are several reasons for that: incompaitability, specificity of tasks and objects and so on. However the main obstacles for wide usage of geoscience databases are complexity for elaborators and complication for users. The complexity of architecture leads to high costs that block the public access. The complication prevents users from understanding when and how to use the database. Only databases, associated with GoogleMaps don't have these drawbacks, but they could be hardly named "geoscience" Nevertheless, open and simple geoscience database is necessary at least for educational purposes (see our abstract for ESSI20/EOS12). We developed a database and web interface to work with them and now it is accessible at maps.sch192.ru. In this database a result is a value of a parameter (no matter which) in a station with a certain position, associated with metadata: the date when the result was obtained; the type of a station (lake, soil etc); the contributor that sent the result. Each contributor has its own profile, that allows to estimate the reliability of the data. The results can be represented on GoogleMaps space image as a point in a certain position, coloured according to the value of the parameter. There are default colour scales and each registered user can create the own scale. The results can be also extracted in *.csv file. For both types of representation one could select the data by date, object type, parameter type, area and contributor. The data are uploaded in *.csv format: Name of the station; Lattitude(dd.dddddd); Longitude(ddd.dddddd); Station type; Parameter type; Parameter value; Date(yyyy-mm-dd). The contributor is recognised while entering. This is the minimal set of features that is required to connect a value of a parameter with a position and see the results. All the complicated data

  13. Editorial and scientific quality in the parameters for inclusion of journals commercial and open access databases

    Directory of Open Access Journals (Sweden)

    Cecilia Rozemblum

    2015-04-01

    Full Text Available In this article, the parameters used by RedALyC, Catalogo Latindex, SciELO, Scopus and Web of Science for the incorporation of scientific journals in their collections are analyzed with the goal of proving their relation with the objectives of each database in addition of debating the valuation that the scientific society is giving to those systems as decisive of "scientific quality". The used indicators are classified in: 1 Editorial quality (formal aspects or editorial management. 2 Content quality (peer review or originality and 3 Visibility (prestige of editors and editorial use and impact, accessibility and indexing It is revealed that: a between 9 and 16% of the indicators are related to the quality of content; b Lack specificity in their definition and determination of measure systems, and c match the goals of each base, although a marked trend towards formal aspects related and visibility is observed. Thus makes it clear that these systems pursuing their own objectives, making a core of journals of “quality” for its readership. We conclude, therefore, that the presence or absence of a journal in these collections is not sufficient to determine the quality of scientific magazine and its contents parameter.

  14. JISC Open Access Briefing Paper

    OpenAIRE

    Swan, Alma

    2005-01-01

    What Open Access is. What Open Access is not. How is Open Access provided? Open Access archives or repositories. Open Access journals. Why should authors provide Open Access to their work? Further information and resources

  15. JISC Open Access Briefing Paper

    OpenAIRE

    Swan, Alma

    2005-01-01

    What Open Access is. What Open Access is not. How is Open Access provided? Open Access archives or repositories. Open Access journals. Why should authors provide Open Access to their work? Further information and resources

  16. GlycomeDB – integration of open-access carbohydrate structure databases

    Directory of Open Access Journals (Sweden)

    von der Lieth Claus-Wilhelm

    2008-09-01

    Full Text Available Abstract Background Although carbohydrates are the third major class of biological macromolecules, after proteins and DNA, there is neither a comprehensive database for carbohydrate structures nor an established universal structure encoding scheme for computational purposes. Funding for further development of the Complex Carbohydrate Structure Database (CCSD or CarbBank ceased in 1997, and since then several initiatives have developed independent databases with partially overlapping foci. For each database, different encoding schemes for residues and sequence topology were designed. Therefore, it is virtually impossible to obtain an overview of all deposited structures or to compare the contents of the various databases. Results We have implemented procedures which download the structures contained in the seven major databases, e.g. GLYCOSCIENCES.de, the Consortium for Functional Glycomics (CFG, the Kyoto Encyclopedia of Genes and Genomes (KEGG and the Bacterial Carbohydrate Structure Database (BCSDB. We have created a new database called GlycomeDB, containing all structures, their taxonomic annotations and references (IDs for the original databases. More than 100000 datasets were imported, resulting in more than 33000 unique sequences now encoded in GlycomeDB using the universal format GlycoCT. Inconsistencies were found in all public databases, which were discussed and corrected in multiple feedback rounds with the responsible curators. Conclusion GlycomeDB is a new, publicly available database for carbohydrate sequences with a unified, all-encompassing structure encoding format and NCBI taxonomic referencing. The database is updated weekly and can be downloaded free of charge. The JAVA application GlycoUpdateDB is also available for establishing and updating a local installation of GlycomeDB. With the advent of GlycomeDB, the distributed islands of knowledge in glycomics are now bridged to form a single resource.

  17. Large-Scale 1:1 Computing Initiatives: An Open Access Database

    Science.gov (United States)

    Richardson, Jayson W.; McLeod, Scott; Flora, Kevin; Sauers, Nick J.; Kannan, Sathiamoorthy; Sincar, Mehmet

    2013-01-01

    This article details the spread and scope of large-scale 1:1 computing initiatives around the world. What follows is a review of the existing literature around 1:1 programs followed by a description of the large-scale 1:1 database. Main findings include: 1) the XO and the Classmate PC dominate large-scale 1:1 initiatives; 2) if professional…

  18. Editorial and scientific quality in the parameters for inclusion of journals commercial and open access databases

    OpenAIRE

    2015-01-01

    In this article, the parameters used by RedALyC, Catalogo Latindex, SciELO, Scopus and Web of Science for the incorporation of scientific journals in their collections are analyzed with the goal of proving their relation with the objectives of each database in addition of debating the valuation that the scientific society is giving to those systems as decisive of "scientific quality". The used indicators are classified in: 1) Editorial quality (formal aspects or editorial management). 2) Cont...

  19. Open-access evidence database of controlled trials and systematic reviews in youth mental health.

    Science.gov (United States)

    De Silva, Stefanie; Bailey, Alan P; Parker, Alexandra G; Montague, Alice E; Hetrick, Sarah E

    2017-05-10

    To present an update to an evidence-mapping project that consolidates the evidence base of interventions in youth mental health. To promote dissemination of this resource, the evidence map has been translated into a free online database (https://orygen.org.au/Campus/Expert-Network/Evidence-Finder or https://headspace.org.au/research-database/). Included studies are extensively indexed to facilitate searching. A systematic search for prevention and treatment studies in young people (mean age 6-25 years) is conducted annually using Embase, MEDLINE, PsycINFO and the Cochrane Library. Included studies are restricted to controlled trials and systematic reviews published since 1980. To date, 221 866 publications have been screened, of which 2680 have been included in the database. Updates are conducted annually. This shared resource can be utilized to substantially reduce the amount of time involved with conducting literature searches. It is designed to promote the uptake of evidence-based practice and facilitate research to address gaps in youth mental health. © 2017 John Wiley & Sons Australia, Ltd.

  20. Filling in the GAPS: evaluating completeness and coverage of open-access biodiversity databases in the United States.

    Science.gov (United States)

    Troia, Matthew J; McManamay, Ryan A

    2016-07-01

    Primary biodiversity data constitute observations of particular species at given points in time and space. Open-access electronic databases provide unprecedented access to these data, but their usefulness in characterizing species distributions and patterns in biodiversity depend on how complete species inventories are at a given survey location and how uniformly distributed survey locations are along dimensions of time, space, and environment. Our aim was to compare completeness and coverage among three open-access databases representing ten taxonomic groups (amphibians, birds, freshwater bivalves, crayfish, freshwater fish, fungi, insects, mammals, plants, and reptiles) in the contiguous United States. We compiled occurrence records from the Global Biodiversity Information Facility (GBIF), the North American Breeding Bird Survey (BBS), and federally administered fish surveys (FFS). We aggregated occurrence records by 0.1° × 0.1° grid cells and computed three completeness metrics to classify each grid cell as well-surveyed or not. Next, we compared frequency distributions of surveyed grid cells to background environmental conditions in a GIS and performed Kolmogorov-Smirnov tests to quantify coverage through time, along two spatial gradients, and along eight environmental gradients. The three databases contributed >13.6 million reliable occurrence records distributed among >190,000 grid cells. The percent of well-surveyed grid cells was substantially lower for GBIF (5.2%) than for systematic surveys (BBS and FFS; 82.5%). Still, the large number of GBIF occurrence records produced at least 250 well-surveyed grid cells for six of nine taxonomic groups. Coverages of systematic surveys were less biased across spatial and environmental dimensions but were more biased in temporal coverage compared to GBIF data. GBIF coverages also varied among taxonomic groups, consistent with commonly recognized geographic, environmental, and institutional sampling biases. This

  1. Open Access @ DTU

    DEFF Research Database (Denmark)

    Ekstrøm, Jeannette

    Open Access is high on the agenda in Denmark and internationally. Denmark has announced a national strategy for Open Access that aims to achieve Open Access to 80% in 2017 and 100% in 2022 to peer review research articles. All public Danish funders as well as H2020 requires that all peer review...... articles that is an outcome of their funding will be Open Access. Uploading your full texts (your final author manuscript after review ) to DTU Orbit is a fundamental part of providing Open Access to your research. We are here to answer all your questions with regards to Open Access and related topics...... such as copyright, DTU Orbit, Open Access journals, APCs, Vouchers etc....

  2. [Open access to academic scholarship as a public policy resource: a study of the Capes database on Brazilian theses and dissertations].

    Science.gov (United States)

    da Silva Rosa, Teresa; Carneiro, Maria José

    2010-12-01

    Access to scientific knowledge is a valuable resource than can inform and validate positions taken in formulating public policy. But access to this knowledge can be challenging, given the diversity and breadth of available scholarship. Communication between the fields of science and of politics requires the dissemination of scholarship and access to it. We conducted a study using an open-access search tool in order to map existent knowledge on a specific topic: agricultural contributions to the preservation of biodiversity. The present article offers a critical view of access to the information available through the Capes database on Brazilian theses and dissertations.

  3. Genelab: Scientific Partnerships and an Open-Access Database to Maximize Usage of Omics Data from Space Biology Experiments

    Science.gov (United States)

    Reinsch, S. S.; Galazka, J..; Berrios, D. C; Chakravarty, K.; Fogle, H.; Lai, S.; Bokyo, V.; Timucin, L. R.; Tran, P.; Skidmore, M.

    2016-01-01

    NASA's mission includes expanding our understanding of biological systems to improve life on Earth and to enable long-duration human exploration of space. The GeneLab Data System (GLDS) is NASA's premier open-access omics data platform for biological experiments. GLDS houses standards-compliant, high-throughput sequencing and other omics data from spaceflight-relevant experiments. The GeneLab project at NASA-Ames Research Center is developing the database, and also partnering with spaceflight projects through sharing or augmentation of experiment samples to expand omics analyses on precious spaceflight samples. The partnerships ensure that the maximum amount of data is garnered from spaceflight experiments and made publically available as rapidly as possible via the GLDS. GLDS Version 1.0, went online in April 2015. Software updates and new data releases occur at least quarterly. As of October 2016, the GLDS contains 80 datasets and has search and download capabilities. Version 2.0 is slated for release in September of 2017 and will have expanded, integrated search capabilities leveraging other public omics databases (NCBI GEO, PRIDE, MG-RAST). Future versions in this multi-phase project will provide a collaborative platform for omics data analysis. Data from experiments that explore the biological effects of the spaceflight environment on a wide variety of model organisms are housed in the GLDS including data from rodents, invertebrates, plants and microbes. Human datasets are currently limited to those with anonymized data (e.g., from cultured cell lines). GeneLab ensures prompt release and open access to high-throughput genomics, transcriptomics, proteomics, and metabolomics data from spaceflight and ground-based simulations of microgravity, radiation or other space environment factors. The data are meticulously curated to assure that accurate experimental and sample processing metadata are included with each data set. GLDS download volumes indicate strong

  4. Glia Open Access Database (GOAD): A comprehensive gene expression encyclopedia of glia cells in health and disease.

    Science.gov (United States)

    Holtman, Inge R; Noback, Michiel; Bijlsma, Marieke; Duong, Kim N; van der Geest, Marije A; Ketelaars, Peer T; Brouwer, Nieske; Vainchtein, Ilia D; Eggen, Bart J L; Boddeke, Hendrikus W G M

    2015-09-01

    Recently, the number of genome-wide transcriptome profiles of pure populations of glia cells has drastically increased, resulting in an unprecedented amount of data that offer opportunities to study glia phenotypes and functions in health and disease. To make genome-wide transcriptome data easily accessible, we developed the Glia Open Access Database (GOAD), available via www.goad.education. GOAD contains a collection of previously published and unpublished transcriptome data, including datasets from isolated microglia, astrocytes and oligodendrocytes both at homeostatic and pathological conditions. It contains an intuitive web-based interface that consists of three features that enable searching, browsing, analyzing, and downloading of the data. The first feature is differential gene expression (DE) analysis that provides genes that are significantly up and down-regulated with the associated fold changes and p-values between two conditions of interest. In addition, an interactive Venn diagram is generated to illustrate the overlap and differences between several DE gene lists. The second feature is quantitative gene expression (QE) analysis, to investigate which genes are expressed in a particular glial cell type and to what degree. The third feature is a search utility, which can be used to find a gene of interest and depict its expression in all available expression data sets by generating a gene card. In addition, quality guidelines and relevant concepts for transcriptome analysis are discussed. Finally, GOAD is discussed in relation to several online transcriptome tools developed in neuroscience and immunology. In conclusion, GOAD is a unique platform to facilitate integration of bioinformatics in glia biology.

  5. Open Access policy effectiveness

    OpenAIRE

    Swan, Alma

    2015-01-01

    This presentation discusses the policy elements that are necessary for an effective open access policy, according to the findings of the analysis of the revamped ROARMAP tool for open access policies by PASTEUR4OA. It contains graphs, charts and numbers for evidence-based arguments

  6. Open Access Policy

    OpenAIRE

    University of East London, .

    2013-01-01

    The University of East London is committed to and supports open access to its research publications.\\ud There is a worldwide move towards free and unrestricted access to research publications, with benefits\\ud for researchers, universities and wider society. UEL supports this initiative and recognises the\\ud importance of open access in increasing the visibility and impact of research. This policy is aligned with\\ud and supports HEFCE’s Policy for Open Access in the Post‐2014 REF, and is alig...

  7. The Open Access Divide

    Directory of Open Access Journals (Sweden)

    Jingfeng Xia

    2013-10-01

    Full Text Available This paper is an attempt to review various aspects of the open access divide regarding the difference between those academics who support free sharing of data and scholarly output and those academics who do not. It provides a structured description by adopting the Ws doctrines emphasizing such questions as who, what, when, where and why for information-gathering. Using measurable variables to define a common expression of the open access divide, this study collects aggregated data from existing open access as well as non-open access publications including journal articles and extensive reports. The definition of the open access divide is integrated into the discussion of scholarship on a larger scale.

  8. Demystifying Open Access

    Energy Technology Data Exchange (ETDEWEB)

    Mele, Salvatore (CERN)

    2007-05-30

    The tenets of Open Access are to grant anyone, anywhere and anytime free access to the results of scientific research. HEP spearheaded the Open Access dissemination of scientific results with the mass mailing of preprints in the pre-WWW era and with the launch of the arXiv preprint system at the dawn of the '90s. The HEP community is now ready for a further push to Open Access which retains all the advantages of the peer-review system and, at the same time, brings the spiraling cost of journal subscriptions under control. I will present a possible plan for the conversion to Open Access of HEP peer-reviewed journals, through a consortium of HEP funding agencies, laboratories and libraries: SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics). SCOAP3 will engage with scientific publishers towards building a sustainable model for Open Access publishing, which is as transparent as possible for HEP authors. In this talk I will present a short overview of the history of Open Access in HEP, the details of the SCOAP3 model and the outlook for its implementation.

  9. Demystifying Open Access

    Energy Technology Data Exchange (ETDEWEB)

    Mele, Salvatore

    2007-05-14

    The tenets of Open Access are to grant anyone, anywhere and anytime free access to the results of scientific research. HEP spearheaded the Open Access dissemination of scientific results with the mass mailing of preprints in the pre-WWW era and with the launch of the arXiv preprint system at the dawn of the '90s. The HEP community is now ready for a further push to Open Access while retaining all the advantages of the peer-review system and, at the same time, bring the spiralling cost of journal subscriptions under control. I will present a possible plan for the conversion to Open Access of HEP peer-reviewed journals, through a consortium of HEP funding agencies, laboratories and libraries: SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics). SCOAP3 will engage with scientific publishers towards building a sustainable model for Open Access publishing, which is as transparent as possible for HEP authors. The current system in which journals income comes from subscription fees is replaced with a scheme where SCOAP3 compensates publishers for the costs incurred to organise the peer-review service and give Open Access to the final version of articles. SCOAP3 will be funded by all countries active in HEP under a 'fair share' scenario, according to their production of HEP articles. In this talk I will present a short overview of the history of Open Access in HEP, the details of the SCOAP3 model and the outlook for its implementation.

  10. The Open Access Divide

    National Research Council Canada - National Science Library

    Jingfeng Xia

    2013-01-01

      This paper is an attempt to review various aspects of the open access divide regarding the difference between those academics who support free sharing of data and scholarly output and those academics who do...

  11. Funding open access

    Science.gov (United States)

    Sprouse, Gene D.; Zimmermann, Frank

    2009-03-01

    We were happy to see the 10-year anniversary of our open-access journal Physical Review Special Topics: Accelerators and Beams (PRST-AB) mentioned in your news article on open-access publishing (December 2008 pp13-14). However, your statement that PRST-AB "is funded by US national labs, whose researchers publish about 150 papers per year in the journal" is not entirely correct.

  12. Open Access Publishing

    Directory of Open Access Journals (Sweden)

    Amelia Hadfield

    2013-07-01

    Full Text Available The rise of open source online journals, free online courses, and other changes in the research and education environment, coined the "academic spring" by some commentators, represents an increasing trend in opening up the rules of access for research. Universities, libraries, publishers and even govern­ments are paying attention to this new movement often referred to with the acronym A2K (access to knowledge.

  13. Accessing and using chemical databases

    DEFF Research Database (Denmark)

    Nikolov, Nikolai Georgiev; Pavlov, Todor; Niemelä, Jay Russell

    2013-01-01

    Computer-based representation of chemicals makes it possible to organize data in chemical databases-collections of chemical structures and associated properties. Databases are widely used wherever efficient processing of chemical information is needed, including search, storage, retrieval......, and dissemination. Structure and functionality of chemical databases are considered. The typical kinds of information found in a chemical database are considered-identification, structural, and associated data. Functionality of chemical databases is presented, with examples of search and access types. More details...... are included about the OASIS database and platform and the Danish (Q)SAR Database online. Various types of chemical database resources are discussed, together with a list of examples....

  14. Open Access and ORCID poster presentation

    DEFF Research Database (Denmark)

    Elbæk, Mikael Karstensen; Ekstrøm, Jeannette

    2014-01-01

    Open Access Open Access is high on the agenda in Denmark and internationally. Denmark has announced a national strategy for Open Access that aims to achieve Open Access to 80% in 2017 and 100% in 2022 to peer review research articles. All public Danish funders as well as H2020 requires that all...... peer review articles that is an outcome of their funding will be Open Access. Uploading your full texts (your final author manuscript after review ) to DTU Orbit is a fundamental part of providing Open Access to your research. We are here to answer all your questions with regards to Open Access...... and related topics such as copyright, DTU Orbit, Open Access journals, APCs, Vouchers etc. ORCID ORCID – Open Research & Contributor ID – is an internationally recognized and widely used researcher-ID. ORCID makes it easy to reuse your data across disciplines, publishers and databases – all you need to do...

  15. UK Open Access Policy Landscape

    OpenAIRE

    Picarra, Mafalda

    2014-01-01

    Two distinct paths for open access are being promoted in UK open access policies: open access publishing (gold open access) by RCUK (Gold OA) and self-archiving (green open access) by HEFCE. This requires continuous and coordinated efforts to support universities, academic libraries and researchers in achieving compliance.

  16. Physical Access Control Database -

    Data.gov (United States)

    Department of Transportation — This data set contains the personnel access card data (photo, name, activation/expiration dates, card number, and access level) as well as data about turnstiles and...

  17. Database Access through Java Technologies

    Directory of Open Access Journals (Sweden)

    Nicolae MERCIOIU

    2010-09-01

    Full Text Available As a high level development environment, the Java technologies offer support to the development of distributed applications, independent of the platform, providing a robust set of methods to access the databases, used to create software components on the server side, as well as on the client side. Analyzing the evolution of Java tools to access data, we notice that these tools evolved from simple methods that permitted the queries, the insertion, the update and the deletion of the data to advanced implementations such as distributed transactions, cursors and batch files. The client-server architectures allows through JDBC (the Java Database Connectivity the execution of SQL (Structured Query Language instructions and the manipulation of the results in an independent and consistent manner. The JDBC API (Application Programming Interface creates the level of abstractization needed to allow the call of SQL queries to any DBMS (Database Management System. In JDBC the native driver and the ODBC (Open Database Connectivity-JDBC bridge and the classes and interfaces of the JDBC API will be described. The four steps needed to build a JDBC driven application are presented briefly, emphasizing on the way each step has to be accomplished and the expected results. In each step there are evaluations on the characteristics of the database systems and the way the JDBC programming interface adapts to each one. The data types provided by SQL2 and SQL3 standards are analyzed by comparison with the Java data types, emphasizing on the discrepancies between those and the SQL types, but also the methods that allow the conversion between different types of data through the methods of the ResultSet object. Next, starting from the metadata role and studying the Java programming interfaces that allow the query of result sets, we will describe the advanced features of the data mining with JDBC. As alternative to result sets, the Rowsets add new functionalities that

  18. KAUST Open Access policy

    KAUST Repository

    Baessa, Mohamed A.

    2017-03-07

    The transition to open access (OA) is being driven by funders, libraries, researchers and publishers around the world, and is having an impact on us all. It is inevitable that different countries, organisations and disciplines are moving at different rates towards an OA model, and it is this that we will focus on in this session. Drawing on experiences from across Europe and the Middle East we will provide perspectives from both a global publisher and institutions based in the region. Taylor & Francis take a flexible, evidence-based approach to open access, providing a choice of publication routes for our authors, and a choice of agreements for our library customers. Carolyn will outline some of the open access developments, opportunities and challenges at Taylor & Francis. The library plays a critical role in facilitating open access for their researchers, from managing a repository to providing support and information on the OA publication process to their authors. Janis Tyhurst and Dr Imad Bachir will each give an overview of how this is being managed by their institution. There will be an opportunity for questions and discussion with the panel.

  19. APS and Open Access

    Science.gov (United States)

    2011-03-01

    The movement toward Open Access continues to gain momentum. A brief review of APS efforts in this area will be presented by APS Editor in Chief, Gene Sprouse. Editors from Physical Review A, B, E, Focus, Letters, and X, Reviews of Modern Physics, and Physics will address your questions about publishing in this evolving environment.

  20. Analysis of Open Access Landscape

    Institute of Scientific and Technical Information of China (English)

    Helen Doyle; Andy Gass; Debra Lappin; Rebecca Kennison

    2005-01-01

    This paper is created by bounding 5 editorials of Public Library of Science (PLoS ) which have written on various aspects of open access. It covers wide range topics of important open access issues, such as from paying for open access to copyright to open access as a public issue, which may be more or less of interest of our audience.

  1. OpenAPC. Open-Access-Publikationskosten als Open Data

    OpenAIRE

    Tullney, Marco

    2015-01-01

    Präsentationsfolien zum Vortrag „OpenAPC. Open-Access-Publikationskosten als Open Data“ in der Session „Ausgestaltung eines wissenschaftsadäquaten APC-Marktes: Grundsätze, Finanzierungsansätze und Management“ der Open-Access-Tage 2015 in Zürich (https://www.open-access.net/community/open-access-tage/open-access-tage-2015-zuerich/programm/#c1974)

  2. Open access / accesso aperto

    Directory of Open Access Journals (Sweden)

    Maria Chiara Pievatolo

    2012-06-01

    Full Text Available Sto collaborando, per la voce Open access, a un e-book a più mani dal titolo Le parole dell’innovazione. Ricorro all’archivio Marini per mettere a disposizione di tutti una versione estesa del mio lemma. Non dice nulla di nuovo rispetto al già noto; può però essere utile a chi sia completamente disinformato sul tema.

  3. Open-Access Publishing

    Directory of Open Access Journals (Sweden)

    Nedjeljko Frančula

    2013-06-01

    Full Text Available Nature, one of the most prominent scientific journals dedicated one of its issues to recent changes in scientific publishing (Vol. 495, Issue 7442, 27 March 2013. Its editors stressed that words technology and revolution are closely related when it comes to scientific publishing. In addition, the transformation of research publishing is not as much a revolution than an attrition war in which all sides are buried. The most important change they refer to is the open-access model in which an author or an institution pays in advance for publishing a paper in a journal, and the paper is then available to users on the Internet free of charge.According to preliminary results of a survey conducted among 23 000 scientists by the publisher of Nature, 45% of them believes all papers should be published in open access, but at the same time 22% of them would not allow the use of papers for commercial purposes. Attitudes toward open access vary according to scientific disciplines, leading the editors to conclude the revolution still does not suit everyone.

  4. ADOPT Open Access

    CERN Multimedia

    2007-01-01

    Are you writing a theoretical paper? An experimental one? Or one about instrumentation? You can publish it in Open Access. Now. Read how... You might have heard about Open Access, the next big thing in scientific publishing. The idea is to make the results of your (publicly funded) research free to read for everyone out there ... not only those lucky ones who work in places where libraries can afford to purchase the expensive subscriptions to scientific journals. CERN, DESY and other particle physics institutes have accepted an offer by one of the leading journals in High Energy Physics, JHEP: our libraries will pay a special subscription fee, and, in exchange, all articles with at least one author from our institutes will be published in Open Access. Anyone, anywhere and anytime will be able to read them, without any financial barrier! If you are writing an instrumentation paper, you can submit it to JINST and benefit from the same offer. This is a major step forward in the planned conversion of existi...

  5. PhID: an open-access integrated pharmacology interactions database for drugs, targets, diseases, genes, side-effects and pathways.

    Science.gov (United States)

    Deng, Zhe; Tu, Weizhong; Deng, Zixin; Hu, Qian-Nan

    2017-09-14

    The current network pharmacology study encountered a bottleneck with a lot of public data scattered in different databases. There is the lack of open-access and consolidated platform that integrates this information for systemic research. To address this issue, we have developed PhID, an integrated pharmacology database which integrates >400,000 pharmacology elements (drug, target, disease, gene, side-effect, and pathway) and >200,000 element interactions in branches of public databases. The PhID has three major applications: (1) assists scientists searching through the overwhelming amount of pharmacology elements interaction data by names, public IDs, molecule structures, or molecular sub-structures; (2) helps visualizing pharmacology elements and their interactions with a web-based network graph; (3) provides prediction of drug-target interactions through two modules: PreDPI-ki and FIM, by which users can predict drug-target interactions of the PhID entities or some drug-target pairs they interest. To get a systems-level understanding of drug action and disease complexity, PhID as a network pharmacology tool was established from the perspective of data layer, visualization layer and prediction model layer to present information untapped by current databases. Database URL: http://phid.ditad.org/.

  6. Why Open Access?

    OpenAIRE

    2015-01-01

    As mentioned in the previous editorial (López-López, 2015), Suber’s (2015) book is a significant contribution that we can use to clarify the limits and the scope of Open Access (OA), and it is also helpful in explaining confusions and inaccuracies that are widespread in our communities, which are not quite ready to face the accelerated changes that are being generated by the new dynamics of scientific output and communication (Gallegos, Berra, Benito, & López-López, 2014). Suber (2015) st...

  7. Challenges of open access

    Energy Technology Data Exchange (ETDEWEB)

    Douglas, J.

    1994-09-01

    As utilities provide open access to their transmission grids under new federal regulations, the volume of bulk power transactions is expected to rise sharply - putting a strain on already heavily loaded delivery systems. Can everybody ride a grid that was designed to be operated in a simpler business environment New EPRI software and analysis methods can help utilities cope with the practical problems that open access brings, such as accurately calculating the costs of providing transmission services to third parties and operating power systems closer to their inherent technical limits. A variety of power system analysis programs are already available for planning purposes, and on-line versions for use by operations personnel are beginning to enter utility demonstration. In addition, new resource scheduling and generation control software can help utilities reduce the total cost of electricity production by up to 3%. A decision framework has also been prepared that a utility can use to integrate technical information about its power system with overall corporate strategy.

  8. Digital Scholarship and Open Access

    Science.gov (United States)

    Losoff, Barbara; Pence, Harry E.

    2010-01-01

    Open access publications provide scholars with unrestricted access to the "conversation" that is the basis for the advancement of knowledge. The large number of open access journals, archives, and depositories already in existence demonstrates the technical and economic viability of providing unrestricted access to the literature that is the…

  9. Digital Scholarship and Open Access

    Science.gov (United States)

    Losoff, Barbara; Pence, Harry E.

    2010-01-01

    Open access publications provide scholars with unrestricted access to the "conversation" that is the basis for the advancement of knowledge. The large number of open access journals, archives, and depositories already in existence demonstrates the technical and economic viability of providing unrestricted access to the literature that is the…

  10. An open-access database of grape harvest dates for climate research: data description and quality assessment

    Directory of Open Access Journals (Sweden)

    V. Daux

    2012-09-01

    Full Text Available We present an open-access dataset of grape harvest dates (GHD series that has been compiled from international, French and Spanish literature and from unpublished documentary sources from public organizations and from wine-growers. As of June 2011, this GHD dataset comprises 380 series mainly from France (93% of the data as well as series from Switzerland, Italy, Spain and Luxemburg. The series have variable length (from 1 to 479 data, mean length of 45 data and contain gaps of variable sizes (mean ratio of observations/series length of 0.74. The longest and most complete ones are from Burgundy, Switzerland, Southern Rhône valley, Jura and Ile-de-France. The most ancient harvest date of the dataset is in 1354 in Burgundy.

    The GHD series were grouped into 27 regions according to their location, to geomorphological and geological criteria, and to past and present grape varieties. The GHD regional composite series (GHD-RCS were calculated and compared pairwise to assess their reliability assuming that series close to one another are highly correlated. Most of the pairwise correlations are significant (p-value < 0.001 and strong (mean pairwise correlation coefficient of 0.58. As expected, the correlations tend to be higher when the vineyards are closer. The highest correlation (R = 0.91 is obtained between the High Loire Valley and the Ile-de-France GHD-RCS.

    The strong dependence of the vine cycle on temperature and, therefore, the strong link between the harvest dates and the temperature of the growing season was also used to test the quality of the GHD series. The strongest correlations are obtained between the GHD-RCS and the temperature series of the nearest weather stations. Moreover, the GHD-RCS/temperature correlation maps show spatial patterns similar to temperature correlation maps. The stability of the correlations over time is explored. The most striking feature is their generalised deterioration at the

  11. Open Access to Geophysical Data

    Science.gov (United States)

    Sergeyeva, Nataliya A.; Zabarinskaya, Ludmila P.

    2017-04-01

    Russian World Data Centers for Solar-Terrestrial Physics & Solid Earth Physics hosted by the Geophysical Center of the Russian Academy of Sciences are the Regular Members of the ICSU-World Data System. Guided by the principles of the WDS Constitution and WDS Data Sharing Principles, the WDCs provide full and open access to data, long-term data stewardship, compliance with agreed-upon data standards and conventions, and mechanisms to facilitate and improve access to data. Historical and current geophysical data on different media, in the form of digital data sets, analog records, collections of maps, descriptions are stored and collected in the Centers. The WDCs regularly fill up repositories and database with new data, support them up to date. Now the WDCs focus on four new projects, aimed at increase of data available in network by retrospective data collection and digital preservation of data; creation of a modern system of registration and publication of data with digital object identifier (DOI) assignment, and promotion of data citation culture; creation of databases instead of file system for more convenient access to data; participation in the WDS Metadata Catalogue and Data Portal by creating of metadata for information resources of WDCs.

  12. Open Source Vulnerability Database Project

    Directory of Open Access Journals (Sweden)

    Jake Kouns

    2008-06-01

    Full Text Available This article introduces the Open Source Vulnerability Database (OSVDB project which manages a global collection of computer security vulnerabilities, available for free use by the information security community. This collection contains information on known security weaknesses in operating systems, software products, protocols, hardware devices, and other infrastructure elements of information technology. The OSVDB project is intended to be the centralized global open source vulnerability collection on the Internet.

  13. Comunicazione e Open Access

    Directory of Open Access Journals (Sweden)

    Orazio Maria Valastro

    2005-06-01

    Full Text Available Il potenziale editoriale della rivista, sebbene compia appena il suo terzo anno di attività, è considerevole: basti pensare che la scelta fondante una parte del progetto editoriale, la pubblicazione di testi integrali, accessibili liberamente e gratuitamente su formato html, ha permesso l’accrescersi costante della consultazione delle pagine web pubblicate su internet e del numero dei visitatori che hanno avuto accesso agli articoli diffusi per ogni numero trimestrale. Condividendo e promuovendo i principi dell’Open-Access, il libero accesso al patrimonio culturale e scientifico, partecipando ad una comunicazione scientifica che favorisca una democratizzazione della conoscenza, si è inoltre indotto un valore aggiunto allo strumento editoriale: la valorizzazione della produzione scientifica e degli stessi contributi degli autori, insieme all’ampia divulgazione dei contenuti, liberamente accessibili da qualsiasi luogo del mondo tramite una connessione ad internet.

  14. Urate levels predict survival in amyotrophic lateral sclerosis: Analysis of the expanded Pooled Resource Open-Access ALS clinical trials database.

    Science.gov (United States)

    Paganoni, Sabrina; Nicholson, Katharine; Chan, James; Shui, Amy; Schoenfeld, David; Sherman, Alexander; Berry, James; Cudkowicz, Merit; Atassi, Nazem

    2017-08-31

    Urate has been identified as a predictor of amyotrophic lateral sclerosis (ALS) survival in some but not all studies. Here we leverage the recent expansion of the Pooled Resource Open-Access ALS Clinical Trials (PRO-ACT) database to study the association between urate levels and ALS survival. Pooled data of 1,736 ALS participants from the PRO-ACT database were analyzed. Cox proportional hazards regression models were used to evaluate associations between urate levels at trial entry and survival. After adjustment for potential confounders (i.e., creatinine and body mass index), there was an 11% reduction in risk of reaching a survival endpoint during the study with each 1-mg/dL increase in uric acid levels (adjusted hazard ratio 0.89, 95% confidence interval 0.82-0.97, P < 0.01). Our pooled analysis provides further support for urate as a prognostic factor for survival in ALS and confirms the utility of the PRO-ACT database as a powerful resource for ALS epidemiological research. Muscle Nerve 2017. © 2017 Wiley Periodicals, Inc.

  15. TRY 3.0 - a substantial upgrade of the global database of plant traits: more data, more species, largely open access

    Science.gov (United States)

    Kattge, Jens; Díaz, Sandra; Lavorel, Sandra; Prentice, Ian Colin; Leadley, Paul; Boenisch, Gerhard; Wirth, Christian; TRY Consortium, The

    2015-04-01

    Plant traits determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services, and provide a link from species richness to ecosystem functional diversity. Plant traits thus are a key to understand and predict the adaptation of ecosystems to environmental changes. At the same time ground based measurements of plant trait data are dispersed over a wide range of databases, many of these not publicly available. To overcome this deficiency IGBP and DIVERSITAS have initiated the development of a joint database, called TRY, aiming at constructing a standard resource of ground based plant trait observations for the ecological community and for the development of global vegetation models. The new version of the global database of plant traits - TRY 3.0 - provides substantially improved information on plant traits: 5.6 million trait records for about 100.000 of the worlds 350.000 plant species. More than 50% of the trait records are open access. In combination with recent improvements in gap-filling of sparse trait matrices (e.g., Bayesian Hierarchical Probabilistic Matrix Factrization; see abstract 15696 by Farideh Fazayeli) the new version of TRY provides the opportunity to derive a filled matrix of plant trait estimates for an unprecedented number of traits and species. We expect that this data richness will facilitate qualitatively new analyses and applications of plant traits (e.g., abstract 15724 by Oliver Purschke).

  16. Monographs and Open Access

    Directory of Open Access Journals (Sweden)

    Geoffrey Crossick

    2016-03-01

    Full Text Available This article presents the project that I led for HEFCE on the implications of OA (open access for monographs and other long-form research publications. The likely requirement that books should be OA if submitted to the REF (Research Excellence Framework after next means that OA development must be based on an understanding of the importance of the monograph in the AHSS (arts, humanities and social sciences as well as the challenges involved in making the transition to online OA. The project focused on three issues and each is summarized in turn in the article: What is the place of the monograph and other long-form publications in AHSS disciplines that makes it so important? What is happening to the monograph and is there a crisis as some suggest? What are the issues involved in moving monographs into a digital and OA environment – not just the challenge of effective business models but also many other aspects of sustaining and enhancing the qualities of the monograph? These include third-party rights, technical challenges, licences and the need for international collaboration.

  17. Application of open-access databases to determine functional connectivity between resveratrol-binding protein QR2 and colorectal carcinoma.

    Science.gov (United States)

    Doonan, Barbara B; Schaafsma, Evelien; Pinto, John T; Wu, Joseph M; Hsieh, Tze-Chen

    2017-08-01

    Colorectal cancer (CRC) is a major cause of cancer-associated deaths worldwide. Recently, oral administration of resveratrol (trans-3,5,4'-trihydroxystilbene) has been reported to significantly reduce tumor proliferation in colorectal cancer patients, however, with little specific information on functional connections. The pathogenesis and development of colorectal cancer is a multistep process that can be categorized using three phenotypic pathways, respectively, chromosome instability (CIN), microsatellite instability (MSI), and CpG island methylator (CIMP). Targets of resveratrol, including a high-affinity binding protein, quinone reductase 2 (QR2), have been identified with little information on disease association. We hypothesize that the relationship between resveratrol and different CRC etiologies might be gleaned using publicly available databases. A web-based microarray gene expression data-mining platform, Oncomine, was selected and used to determine whether QR2 may serve as a mechanistic and functional biotarget within the various CRC etiologies. We found that QR2 messenger RNA (mRNA) is overexpressed in CRC characterized by CIN, particularly in cells showing a positive KRAS (Kirsten rat sarcoma viral oncogene homolog) mutation, as well as by the MSI but not the CIMP phenotype. Mining of Oncomine revealed an excellent correlation between QR2 mRNA expression and certain CRC etiologies. Two resveratrol-associated genes, adenomatous polyposis coli (APC) and TP53, found in CRC were further mined, using cBio portal and Colorectal Cancer Atlas which predicted a mechanistic link to exist between resveratrol→QR2/TP53→CIN. Multiple web-based data mining can provide valuable insights which may lead to hypotheses serving to guide clinical trials and design of therapies for enhanced disease prognosis and patient survival. This approach resembles a BioGPS, a capability for mining web-based databases that can elucidate the potential links between compounds to

  18. Open access and open source in chemistry

    Directory of Open Access Journals (Sweden)

    Todd Matthew H

    2007-02-01

    Full Text Available Abstract Scientific data are being generated and shared at ever-increasing rates. Two new mechanisms for doing this have developed: open access publishing and open source research. We discuss both, with recent examples, highlighting the differences between the two, and the strengths of both.

  19. Open Source, Open Access, Open Review, Open Data. Initiativen zu mehr Offenheit in der digitalen Welt

    OpenAIRE

    Herb, Ulrich

    2011-01-01

    The article discusses the principles of openess, open access and open availability of information based on the examples of open access to scientific information, open government data, open geographical data and open source software.

  20. Open Source, Open Access, Open Review, Open Data. Initiativen zu mehr Offenheit in der digitalen Welt

    OpenAIRE

    Herb, Ulrich

    2011-01-01

    The article discusses the principles of openess, open access and open availability of information based on the examples of open access to scientific information, open government data, open geographical data and open source software.

  1. Challenges in Database Design with Microsoft Access

    Science.gov (United States)

    Letkowski, Jerzy

    2014-01-01

    Design, development and explorations of databases are popular topics covered in introductory courses taught at business schools. Microsoft Access is the most popular software used in those courses. Despite quite high complexity of Access, it is considered to be one of the most friendly database programs for beginners. A typical Access textbook…

  2. LHC Databases on the Grid: Achievements and Open Issues

    CERN Document Server

    Vaniachine, A V

    2010-01-01

    To extract physics results from the recorded data, the LHC experiments are using Grid computing infrastructure. The event data processing on the Grid requires scalable access to non-event data (detector conditions, calibrations, etc.) stored in relational databases. The database-resident data are critical for the event data reconstruction processing steps and often required for physics analysis. This paper reviews LHC experience with database technologies for the Grid computing. List of topics includes: database integration with Grid computing models of the LHC experiments; choice of database technologies; examples of database interfaces; distributed database applications (data complexity, update frequency, data volumes and access patterns); scalability of database access in the Grid computing environment of the LHC experiments. The review describes areas in which substantial progress was made and remaining open issues.

  3. Open access, open education resources and open data in Uganda.

    Science.gov (United States)

    Salvo, Ivana Di; Mwoka, Meggie; Kwaga, Teddy; Rukundo, Priscilla Aceng; Ernest, Dennis Ssesanga; Osaheni, Louis Aikoriogie; John, Kasibante; Shafik, Kasirye; de Sousa, Agostinho Moreira

    2015-01-01

    As a follow up to OpenCon 2014, International Federation of Medical Students' Associations (IFMSA) students organized a 3 day workshop Open Access, Open Education Resources and Open Data in Kampala from 15-18 December 2014. One of the aims of the workshop was to engage the Open Access movement in Uganda which encompasses the scientific community, librarians, academia, researchers and students. The IFMSA students held the workshop with the support of: Consortium for Uganda University Libraries (CUUL), The Right to Research Coalition, Electronic Information for Libraries (EIFL), Makerere University, International Health Sciences University (IHSU), Pan African Medical Journal (PAMJ) and the Centre for Health Human Rights and Development (CEHURD). All these organizations are based or have offices in Kampala. The event culminated in a meeting with the Science and Technology Committee of Parliament of Uganda in order to receive the support of the Ugandan Members of Parliament and to make a concrete change for Open Access in the country.

  4. Correlates of Access to Business Research Databases

    Science.gov (United States)

    Gottfried, John C.

    2010-01-01

    This study examines potential correlates of business research database access through academic libraries serving top business programs in the United States. Results indicate that greater access to research databases is related to enrollment in graduate business programs, but not to overall enrollment or status as a public or private institution.…

  5. SCOAP3 and Open Access

    CERN Document Server

    Mele, Salvatore; D'Agostino, Dan; Dyas-Correia, Sharon

    2009-01-01

    SCOAP3 is an innovative Open Access initiative for publishing in high-energy physics. The model is viewed by many as a potential solution to multiple issues related to the financial crisis, the peer review system, scholarly communication, and the need to support institutional repositories. This installment of “The Balance Point” presents articles written by three Open Access advocates, outlining the SCOAP3 proposal, benefits of participation, and some of the roles libraries, publishers and scientists can play in making important changes to scholarly communication. Contributors discuss scalability and transferability issues of SCOAP3, as well as other matters of concern.

  6. Open Access. Chapter 6 of Scholarly Communication for Librarians.

    OpenAIRE

    Morrison, Heather

    2008-01-01

    In-depth overview of open access, covering definitions (open access publishing, open access archives, gratis and libre, open access works versus open access processes), major statements and declarations, types of open access, major initiatives, trends, advocacy and lobbying.

  7. Open Access. Chapter 6 of Scholarly Communication for Librarians.

    OpenAIRE

    Morrison, Heather

    2008-01-01

    In-depth overview of open access, covering definitions (open access publishing, open access archives, gratis and libre, open access works versus open access processes), major statements and declarations, types of open access, major initiatives, trends, advocacy and lobbying.

  8. The Inevitability of Open Access

    Science.gov (United States)

    Lewis, David W.

    2012-01-01

    Open access (OA) is an alternative business model for the publication of scholarly journals. It makes articles freely available to readers on the Internet and covers the costs associated with publication through means other than subscriptions. This article argues that Gold OA, where all of the articles of a journal are available at the time of…

  9. The Inevitability of Open Access

    Science.gov (United States)

    Lewis, David W.

    2012-01-01

    Open access (OA) is an alternative business model for the publication of scholarly journals. It makes articles freely available to readers on the Internet and covers the costs associated with publication through means other than subscriptions. This article argues that Gold OA, where all of the articles of a journal are available at the time of…

  10. Open Access: From Myth to Paradox

    Energy Technology Data Exchange (ETDEWEB)

    Ginsparg, Paul (Cornell University)

    2009-05-06

    True open access to scientific publications not only gives readers the possibility to read articles without paying subscription, but also makes the material available for automated ingestion and harvesting by 3rd parties. Once articles and associated data become universally treatable as computable objects, openly available to 3rd party aggregators and value-added services, what new services can we expect, and how will they change the way that researchers interact with their scholarly communications infrastructure? I will discuss straightforward applications of existing ideas and services, including citation analysis, collaborative filtering, external database linkages, interoperability, and other forms of automated markup, and speculate on the sociology of the next generation of users.

  11. Commentary: open access, open business, closed fairness!

    Science.gov (United States)

    Moustafa, Khaled

    2015-01-01

    A strong trend to move from print to online publication is largely perceived in scientific and nonscientific fields. A growing number of publishers increasingly opt for online publication as an option or a compulsory alternative. From readers' perspective, this is a highly appreciated facility, but from the author's, things are different mainly because of excessive article processing charges (APC) that make the open access system sometimes as a hindrance for many authors but a lucrative enterprise for many shareholders, enticing the most traditional and conservative publishers.

  12. [Medical journals and open access].

    Science.gov (United States)

    Sember, Marijan

    2008-01-01

    The open access (OA) or the idea of a free access to scholarly literature published in electronic form has been already well established in the field of medicine. Medline has already been free for a decade, PubMed Central has been growing steadily. The global crisis of the scientific publishing, becoming increasingly dominated by multinational companies and constant increase of journal prices have moved to action not only individuals and institutions but governments and research charities too. The aim of this article is to give an overview of the main open access initiatives and resources in biomedicine (PubMed, PubMed Central, BioMed Central, PLoS). The OA pros and cons are briefly discussed emphasizing the benefits of OA to medical research and practice.

  13. Open Access Publishing with Drupal

    Directory of Open Access Journals (Sweden)

    Nina McHale

    2011-10-01

    Full Text Available In January 2009, the Colorado Association of Libraries (CAL suspended publication of its print quarterly journal, Colorado Libraries, as a cost-saving measure in a time of fiscal uncertainty. Printing and mailing the journal to its 1300 members cost CAL more than $26,000 per year. Publication of the journal was placed on an indefinite hiatus until the editorial staff proposed an online, open access format a year later. The benefits to migrating to open access included: significantly lower costs; a green platform; instant availability of content; a greater level of access to users with disabilities; and a higher level of visibility of the journal and the association. The editorial staff chose Drupal, including the E-journal module, and while Drupal is notorious for its steep learning curve—which exacerbated delays to content that had been created before the publishing hiatus—the fourth electronic issue was published recently at coloradolibrariesjournal.org. This article will discuss both the benefits and challenges of transitioning to an open access model and the choice Drupal as a platform over other more established journal software options.

  14. LERU roadmap towards Open Access.

    Science.gov (United States)

    Ayris, Paul; Björnshauge, Lars; Collier, Mel; Ferwerda, Eelco; Jacobs, Neil; Sinikara, Kaisa; Swan, Alma; de Bries, Saskia; van Wesenbeeck, Astrid

    2015-09-01

    Money which is not directly spent on research and education, even though it is largely taxpayers´ money. As Harvard University already denounced in 2012, many large journal publishers have rendered the situation "fiscally unsustainable and academically restrictive", with some journals costing as much as $40,000 per year (and publishers drawing profits of 35% or more). If one of the wealthiest universities in the world can no longer afford it, who can? It is easy to picture the struggle of European universities with tighter budgets. In addition to subscription costs, academic research funding is also largely affected by "Article Processing Charges" (APC), which come at an additional cost of €2000/article, on average, when making individual articles Gold Open Access. Some publishers are in this way even being paid twice for the same content ("double dipping"). In the era of Open Science, Open Access to publications is one of the cornerstones of the new research paradigm and business models must support this transition. It should be one of the principal objectives of Commissioner Carlos Moedas and the Dutch EU Presidency (January-June 2016) to ensure that this transition happens. Further developing the EU´s leadership in research and innovation largely depends on it. With this statement "Moving Forwards on Open Access", LERU calls upon all universities, research institutes, research funders and researchers to sign this statement and give a clear signal towards the European Commission and the Dutch EU Presidency.

  15. Support the Open Access Movement

    CERN Multimedia

    2005-01-01

    CERN's Executive Board recently endorsed a new policy of open access to the laboratory's results: Continuing CERN action on Open Access (OA) [http://cds.cern.ch/record/828991/files/open-2005-006.pdf]. What does this policy mean for you? CERN authors have two responsibilities: Submit your document to the CERN Document Server; Consider submitting future articles to an Open Access journal. Since 2001, Operational Circular No. 6 has required every CERN author (Staff member, Fellow, or any Associated member of personnel who is allowed to use CERN as his affiliation) to submit a copy of their scientific documents to the CERN Document Server (CDS). For some groups all approved documents are submitted by the secretary (see the Departments' policies at: http://library.cern.ch/cern_publications/cern_publication_policy.html). Each author should personally also ensure the submission of any other articles which are not added in this way, such as conference contributions and review articles. It is not sufficient to re...

  16. FACTS technology for open access

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2001-07-01

    Summary of the present state of the art on the key technological developments in the FACTS (Flexible AC Transmission Systems) area, addressing in particular the open access aspects of networks and the scope for the application of FACTS devices therein. Contains the approved terms of reference. Definition of FACTS includes conventional devices such as phase shifting transformers, series capacitors and HVDC links for completeness and the possibility of combining them with FACTS devices to improve HVAC transmission system flexibility and control. (author)

  17. Predatory Open Access in Rehabilitation.

    Science.gov (United States)

    Manca, Andrea; Martinez, Gianluca; Cugusi, Lucia; Dragone, Daniele; Mercuro, Giuseppe; Deriu, Franca

    2017-01-20

    Increasingly scholars and researchers are being solicited by predatory open access journals seeking manuscript submissions and abusing the author-pays model by charging authors with publishing fees without any or proper peer review. Such questionable editorial practices are threatening the reputation and credibility of scholarly publishing. To date, no investigation has been conducted on this phenomenon in the field of rehabilitation. This study attempts to identify specific predatory journals operating in this field to quantify the phenomenon and its geographic distribution. Beall's List has been used to this end which, although not perfect, is a comprehensive and up-to-date report of predatory publishers. Of the 1113 publishers on the list, 59 journals were identified, for a total of 5610 published articles. The median number of articles published by each journal was 21, and the median amount of article processing charges was $499. Only 1 out of 59 journals was included in the Directory of Open Access Journals, whereas 7 (12%) were indexed by PubMed. Most of the publishers were based in India (36%) followed by the United States (25%) and Pakistan (5%), and 25% were without a verifiable address. The data indicate that the threat of predatory publishing in rehabilitation is real. Physiatrists, physiotherapists, researchers, and academics operating in this field are advised to use the tools available to recognize predatory practices before considering publishing in open access journals.

  18. Free software and open source databases

    Directory of Open Access Journals (Sweden)

    Napoleon Alexandru SIRITEANU

    2006-01-01

    Full Text Available The emergence of free/open source software -FS/OSS- enterprises seeks to push software development out of the academic stream into the commercial mainstream, and as a result, end-user applications such as open source database management systems (PostgreSQL, MySQL, Firebird are becoming more popular. Companies like Sybase, Oracle, Sun, IBM are increasingly implementing open source strategies and porting programs/applications into the Linux environment. Open source software is redefining the software industry in general and database development in particular.

  19. Accessing and using chemical property databases.

    Science.gov (United States)

    Hastings, Janna; Josephs, Zara; Steinbeck, Christoph

    2012-01-01

    Chemical compounds participate in all the processes of life. Understanding the complex interactions of small molecules such as metabolites and drugs and the biological macromolecules that consume and produce them is key to gaining a wider understanding in a systemic context. Chemical property databases collect information on the biological effects and physicochemical properties of chemical entities. Accessing and using such databases is key to understanding the chemistry of toxic molecules. In this chapter, we present methods to search, understand, download, and manipulate the wealth of information available in public chemical property databases, with particular focus on the database of Chemical Entities of Biological Interest (ChEBI).

  20. Open access to scientific publishing

    Directory of Open Access Journals (Sweden)

    Janne Beate Reitan

    2016-12-01

    Full Text Available Interest in open access (OA to scientific publications is steadily increasing, both in Norway and internationally. From the outset, FORMakademisk has been published as a digital journal, and it was one of the first to offer OA in Norway. We have since the beginning used Open Journal Systems (OJS as publishing software. OJS is part of the Public Knowledge Project (PKP, which was created by Canadian John Willinsky and colleagues at the Faculty of Education at the University of British Columbia in 1998. The first version of OJS came as an open source software in 2001. The programme is free for everyone to use and is part of a larger collective movement wherein knowledge is shared. When FORMakademisk started in 2008, we received much help from the journal Acta Didactic (n.d. at the University of Oslo, which had started the year before us. They had also translated the programme to Norwegian. From the start, we were able to publish in both Norwegian and English. Other journals have used FORMakademisk as a model and source of inspiration when starting or when converting from subscription-based print journals to electronic OA, including the Journal of Norwegian Media Researchers [Norsk medietidsskrift]. It is in this way that the movement around PKP works and continues to grow to provide free access to research. As the articles are OA, they are also easily accessible to non-scientists. We also emphasise that the language should be readily available, although it should maintain a high scientific quality. Often there may be two sides of the same coin. We on the editorial team are now looking forward to adopting the newly developed OJS 3 this spring, with many new features and an improved design for users, including authors, peer reviewers, editors and readers.

  1. DEIMOS – an Open Source Image Database

    Directory of Open Access Journals (Sweden)

    M. Blazek

    2011-12-01

    Full Text Available The DEIMOS (DatabasE of Images: Open Source is created as an open-source database of images and videos for testing, verification and comparing of various image and/or video processing techniques such as enhancing, compression and reconstruction. The main advantage of DEIMOS is its orientation to various application fields – multimedia, television, security, assistive technology, biomedicine, astronomy etc. The DEIMOS is/will be created gradually step-by-step based upon the contributions of team members. The paper is describing basic parameters of DEIMOS database including application examples.

  2. Open Access og Den Bibliometriske Forskningsindikator

    DEFF Research Database (Denmark)

    Dorch, Bertil

    2011-01-01

    I sine "Anbefalinger til implementering af Open Access i Danmark" foreslår det nationale Open Access Udvalget blandet andet, at Den Bibliometriske Forskningsindikator (BFI) bør koordineres med en national Open Access-politik. I dette paper, der er baseret på et blogindlæg, fremfører forfatteren...... fire grunde til, hvorfor han synes det er en dårlig idé at koble Open Access til BFI....

  3. Open Access og Den Bibliometriske Forskningsindikator

    DEFF Research Database (Denmark)

    Dorch, Bertil

    2011-01-01

    I sine "Anbefalinger til implementering af Open Access i Danmark" foreslår det nationale Open Access Udvalget blandet andet, at Den Bibliometriske Forskningsindikator (BFI) bør koordineres med en national Open Access-politik. I dette paper, der er baseret på et blogindlæg, fremfører forfatteren...... fire grunde til, hvorfor han synes det er en dårlig idé at koble Open Access til BFI....

  4. Open Access Publishing: What Authors Want

    Science.gov (United States)

    Nariani, Rajiv; Fernandez, Leila

    2012-01-01

    Campus-based open access author funds are being considered by many academic libraries as a way to support authors publishing in open access journals. Article processing fees for open access have been introduced recently by publishers and have not yet been widely accepted by authors. Few studies have surveyed authors on their reasons for publishing…

  5. Open Access Publishing: What Authors Want

    Science.gov (United States)

    Nariani, Rajiv; Fernandez, Leila

    2012-01-01

    Campus-based open access author funds are being considered by many academic libraries as a way to support authors publishing in open access journals. Article processing fees for open access have been introduced recently by publishers and have not yet been widely accepted by authors. Few studies have surveyed authors on their reasons for publishing…

  6. Information network supports open access

    Energy Technology Data Exchange (ETDEWEB)

    Cauley, G.; Hirsch, P.; Vojdani, A. [Electric Power Research Inst., Palo Alto, CA (United States); Saxton, T.; Cleveland, F.

    1996-07-01

    On March 29, 1995, the US Federal Energy Regulatory Commission (FERC) issued a notice of proposed rulemaking (NOPR) aimed at promoting wholesale competition through nondiscriminatory open transmission access. Industry working groups were formed to define the content of the transmission services information to be communicated over an electronic network and to define the requirements of the network itself.FERC issued final rules on April 24, 1996. At this writing, the transmission services information network (TSIN) is just completing design, and initial implementation should be in place by November 1, 1996. There will be about 20--35 nodes representing all public transmission systems in the US. The network will use the Internet as a base, allowing access by all authorized users anywhere in the world. The tools used will be based on the standard Internet tools such as World-Wide Web (Web) browsers. This provides a low-cost, high-function, consistent interconnected network to provide information to all transmission customers. The network will have good performance and be secure. It will allow transmission customers to have available information on available transmission capacity, cost and tariffs for transmission capacity, and cost of ancillary services. This article outlines the content of the industry reports and the FERC rulings.

  7. Village Green Project: Web-accessible Database

    Science.gov (United States)

    The purpose of this web-accessible database is for the public to be able to view instantaneous readings from a solar-powered air monitoring station located in a public location (prototype pilot test is outside of a library in Durham County, NC). The data are wirelessly transmitte...

  8. Open access meta-analysis for psychotherapy research.

    Science.gov (United States)

    Baldwin, Scott A; Del Re, A C

    2016-04-01

    Meta-analysis has played a key role in psychotherapy research for nearly 40 years. There is now an opportunity for technology to assist with transparent and open meta-analyses. The authors describe an open-access database of effect sizes and a corresponding web application for performing meta-analyses, viewing the database, and downloading effect sizes. The initial databases provide effect sizes for family therapy for delinquency studies and for alliance-outcome correlations in individual psychotherapy. Disciplinary norms about data sharing and openness are shifting. Furthermore, meta-analyses of behavioral interventions have been criticized for lacking transparency and openness. The database and web application are aimed at facilitating data sharing and improving the transparency of meta-analyses. The authors conclude with a discussion of future directions for the database.

  9. High-impact open access journals

    OpenAIRE

    Vallez, Mari; Pagès i Camps, Gerard

    2014-01-01

    Poster presented in the LIBER 43rd Annual Conference. It is shown the tool "High-impact open access journals ¿" created by the Library of the Universitat Oberta de Catalunya. The tool gives access to open access journals listed in the Directory of Open Access Journals (DOAJ) with impact factor in the Journal Citation Reports 2011 or SCImago Journal Rank. Pòster presentat al LIBER 43rd Annual Conference. Es mostra l'eina "High-impact open access journals" creada per la Biblioteca de ...

  10. Open access: changing global science publishing.

    Science.gov (United States)

    Gasparyan, Armen Yuri; Ayvazyan, Lilit; Kitas, George D

    2013-08-01

    The article reflects on open access as a strategy of changing the quality of science communication globally. Successful examples of open-access journals are presented to highlight implications of archiving in open digital repositories for the quality and citability of research output. Advantages and downsides of gold, green, and hybrid models of open access operating in diverse scientific environments are described. It is assumed that open access is a global trend which influences the workflow in scholarly journals, changing their quality, credibility, and indexability.

  11. World Summit embraces Open Access, libraries

    CERN Multimedia

    Kaser, D

    2004-01-01

    "The long-anticipated "first phase" meeting of the World Summit on the Information Society (WSIS), held in Geneva in December, was supposed to have been about equal access. It turned out being equally about open access as leading scientific organizations pushed their open-access initiative onto the World Summit agenda" (1 page)

  12. Database Security System for Applying Sophisticated Access Control via Database Firewall Server

    OpenAIRE

    Eun-Ae Cho; Chang-Joo Moon; Dae-Ha Park; Kang-Bin Yim

    2014-01-01

    Database security, privacy, access control, database firewall, data break masking Recently, information leakage incidents have occurred due to database security vulnerabilities. The administrators in the traditional database access control methods grant simple permissions to users for accessing database objects. Even though they tried to apply more strict permissions in recent database systems, it was difficult to properly adopt sophisticated access control policies to commercial databases...

  13. Open Access op de kaart gezet

    NARCIS (Netherlands)

    den Hollander, Franciscus

    2010-01-01

    Open Access, de vrije toegang tot wetenschappelijke informatie, wint terrein: informatie is in toenemende mate openbaar toegankelijk. Het Open Accessjaar 2009 werd op 2 februari van dit jaar afgesloten met een drukbezocht symposium in de Beurs van Berlage in Amsterdam. Dat Open Access nu echt op de

  14. Open Access op de kaart gezet

    NARCIS (Netherlands)

    den Hollander, Franciscus

    Open Access, de vrije toegang tot wetenschappelijke informatie, wint terrein: informatie is in toenemende mate openbaar toegankelijk. Het Open Accessjaar 2009 werd op 2 februari van dit jaar afgesloten met een drukbezocht symposium in de Beurs van Berlage in Amsterdam. Dat Open Access nu echt op de

  15. Public Access and Open Access: Is There a Difference? | Poster

    Science.gov (United States)

    By Robin Meckley, Contributing Writer, and Tracie Frederick, Guest Writer Open access and public access—are they different concepts or are they the same? What do they mean for the researchers at NCI at Frederick? “Open-access (OA) literature is digital, online, free of charge, and free of most copyright and licensing restrictions. What makes it possible is the Internet and the consent of the author or copyright-holder,” according to an open access website maintained by Peter Suber, director, Harvard Open Access Project.

  16. Public Access and Open Access: Is There a Difference? | Poster

    Science.gov (United States)

    By Robin Meckley, Contributing Writer, and Tracie Frederick, Guest Writer Open access and public access—are they different concepts or are they the same? What do they mean for the researchers at NCI at Frederick? “Open-access (OA) literature is digital, online, free of charge, and free of most copyright and licensing restrictions. What makes it possible is the Internet and the consent of the author or copyright-holder,” according to an open access website maintained by Peter Suber, director, Harvard Open Access Project.

  17. Necobelac supporting open access, a path to open science

    OpenAIRE

    Agudelo-Calderon, Carlos Alberto

    2012-01-01

    On the occasion of the International Open Access week, a global event now in its 5th year, promoting Open Access (OA) as a new norm in scholarship and research, we, the NECOBELAC (Network of collaboration between Europe and Latin American Caribbean (LAC) countries to spread know-how in scientific writing and provide the best tools to exploit open access information for the safeguard of public health) project partners, wish to stimulate the scientific community to take action and make their wo...

  18. Open Access: (Social Sciences as Public Good

    Directory of Open Access Journals (Sweden)

    Katja Mruck

    2004-05-01

    Full Text Available The need to provide open access to articles published in peer-reviewed scholarly journals is becoming apparent to researchers as well as the non-scientific public as a result of "Budapest Open Access Initiative," the "Berlin Declaration on Open Access to Knowledge in the Sciences and Humanities" and other initiatives. The core question that concerns open access is the following: since scientific information is usually financed by public funding, and therefore a public good, shouldn't the access be free of cost to all interested parties. Currently the open access movement is encountering the movement against the "Digital Divide," and therefore it is not surprising that the demand for open access has extended to a political level as reflected in the "WSIS Declaration of Principles" and the "WSIS Plan of Action." This article begins by providing a brief summary of the historical background of the open access movement and its major aims (Section 2. It then lists examples that explain possible links between the open access movement and the initiatives against the "Digital Divide" (Section 3. Section 4 considers some important barriers responsible for the fact that open access publishing is still not part of the everyday scientific publishing practices. This has various consequences. Selected consequences concerning the recent debate on redistribution processes between "information poor" and "information rich" are summarized in Section 5. URN: urn:nbn:de:0114-fqs0402141

  19. Perilous terra incognita--open-access journals.

    Science.gov (United States)

    Balon, Richard

    2014-04-01

    The author focuses on a new rapidly spreading practice of publication in open-access journals. The pros and cons of open-access journals are discussed. Publishing in these journals may be cost prohibitive for educators and junior faculty members. Some authors may be lured by the ease of publishing in open-access journals (and their, at times, inflated self-description, e.g., "international", "scientific"), and their possibly valuable contributions will escape the attention of Academic Psychiatry readership in the vast sea of open-access journals. The readership may be flooded with a large number of low-quality articles (maybe not even properly peer-reviewed) from open-access journals. It may take some time to sort out what is and what is not relevant and useful. Open-access publishing represents a problematic and controversial practice and may be associated with a conflict of interest for the editors and publishers of these journals.

  20. Worldwide open access: UK leadership?

    Directory of Open Access Journals (Sweden)

    Stevan Harnad

    2013-03-01

    Full Text Available The web is destined to become humankind's cognitive commons, where digital knowledge is jointly created and freely shared. The UK has been a leader in the global movement toward open access (OA to research but recently its leadership has been derailed by the joint influence of the publishing industry lobby from without and well-intentioned but premature and unhelpful over-reaching from within the OA movement itself. The result has been the extremely counterproductive ‘Finch Report’ followed by a new draft of the Research Councils UK (RCUK OA mandate, downgrading the role of cost-free OA self-archiving of research publications (‘green OA’ in favor of paying subscription publishers over and above subscriptions, out of scarce research funds, in exchange for making single articles OA (‘hybrid gold OA’. The motivation of the new policy is to reform publication and to gain certain re-use rights (CC-BY, but the likely effect would be researcher resistance, very little OA and a waste of research funds. There is still time to fix the RCUK mandate and restore the UK's leadership by taking a few very specific steps to clarify and strengthen the green component by adding a mechanism for monitoring and verifying compliance, with consequences for non-compliance, along lines also being adopted in the EC and the US.

  1. Paper-based mobile access to databases

    OpenAIRE

    Signer, Beat; Norrie, Moira C.; Grossniklaus, Michael; Belotti, Rudi; Decurtins, Corsin; Weibel, Nadir

    2006-01-01

    Our demonstration is a paper-based interactive guide for visitors to the world's largest international arts festival that was developed as part of a project investigating new forms of context-aware information delivery and interaction in mobile environments. Information stored in a database is accessed from a set of interactive paper documents, including a printed festival brochure, a city map and a bookmark. Active areas are defined within the documents and selection of these using a special...

  2. Distributed Access View Integrated Database (DAVID) system

    Science.gov (United States)

    Jacobs, Barry E.

    1991-01-01

    The Distributed Access View Integrated Database (DAVID) System, which was adopted by the Astrophysics Division for their Astrophysics Data System, is a solution to the system heterogeneity problem. The heterogeneous components of the Astrophysics problem is outlined. The Library and Library Consortium levels of the DAVID approach are described. The 'books' and 'kits' level is discussed. The Universal Object Typer Management System level is described. The relation of the DAVID project with the Small Business Innovative Research (SBIR) program is explained.

  3. Reasons to temper enthusiasm about open access nursing journals.

    Science.gov (United States)

    de Jong, Gideon

    2017-04-01

    Open access is a relatively new phenomenon within nursing science. Several papers from various nursing journals have been published recently on the disadvantages of the traditional model of purchasing proprietary fee-based databases to access scholarly information. Just few nursing scholars are less optimistic about the possible benefits of open access nursing journals. A critical reflection on the merits and pitfalls of open access journals along insights from the literature and personal opinion. Two arguments are discussed, providing justification for tempering enthusiasm about open access journals. First, only research groups with sufficient financial resources can publish in open access journals. Second, open access has conflicting incentives, where the aim is to expand production at the expense of publishing quality articles; a business model that fits well into a neoliberal discourse. There are valid reasons to criticise the traditional publishers for the excessive costs of a single article, therefore preventing the dissemination of scholarly nursing information. On the contrary, the business model of open access publishers is no less imbued with the neoliberal tendency of lining the pockets.

  4. Achieving open access to conservation science.

    Science.gov (United States)

    Fuller, Richard A; Lee, Jasmine R; Watson, James E M

    2014-12-01

    Conservation science is a crisis discipline in which the results of scientific enquiry must be made available quickly to those implementing management. We assessed the extent to which scientific research published since the year 2000 in 20 conservation science journals is publicly available. Of the 19,207 papers published, 1,667 (8.68%) are freely downloadable from an official repository. Moreover, only 938 papers (4.88%) meet the standard definition of open access in which material can be freely reused providing attribution to the authors is given. This compares poorly with a comparable set of 20 evolutionary biology journals, where 31.93% of papers are freely downloadable and 7.49% are open access. Seventeen of the 20 conservation journals offer an open access option, but fewer than 5% of the papers are available through open access. The cost of accessing the full body of conservation science runs into tens of thousands of dollars per year for institutional subscribers, and many conservation practitioners cannot access pay-per-view science through their workplace. However, important initiatives such as Research4Life are making science available to organizations in developing countries. We urge authors of conservation science to pay for open access on a per-article basis or to choose publication in open access journals, taking care to ensure the license allows reuse for any purpose providing attribution is given. Currently, it would cost $51 million to make all conservation science published since 2000 freely available by paying the open access fees currently levied to authors. Publishers of conservation journals might consider more cost effective models for open access and conservation-oriented organizations running journals could consider a broader range of options for open access to nonmembers such as sponsorship of open access via membership fees.

  5. On Simplifying Features in OpenStreetMap database

    Science.gov (United States)

    Qian, Xinlin; Tao, Kunwang; Wang, Liang

    2015-04-01

    Currently the visualization of OpenStreetMap data is using a tile server which stores map tiles that have been rendered from vector data in advance. However, tiled map are short of functionalities such as data editing and customized styling. To enable these advanced functionality, Client-side processing and rendering of geospatial data is needed. Considering the voluminous size of the OpenStreetMap data, simply sending region queries results of OSM database to client is prohibitive. To make the OSM data retrieved from database adapted for client receiving and rendering, It must be filtered and simplified at server-side to limit its volume. We propose a database extension for OSM database to make it possible to simplifying geospatial objects such as ways and relations during data queries. Several auxiliary tables and PL/pgSQL functions are presented to make the geospatial features can be simplified by omitting unimportant vertices. There are five components in the database extension: Vertices weight computation by polyline and polygon simplification algorithm, Vertices weight storage in auxiliary tables. filtering and selecting of vertices using specific threshold value during spatial queries, assembling of simplified geospatial objects using filtered vertices, vertices weight updating after geospatial objects editing. The database extension is implemented on an OSM APIDB using PL/pgSQL. The database contains a subset of OSM database. The experimental database contains geographic data of United Kingdom which is about 100 million vertices and roughly occupy 100GB disk. JOSM are used to retrieve the data from the database using a revised data accessing API and render the geospatial objects in real-time. When serving simplified data to client, The database allows user to set the bound of the error of simplification or the bound of responding time in each data query. Experimental results show the effectiveness and efficiency of the proposed methods in building a

  6. Open Access, Education Research, and Discovery

    Science.gov (United States)

    Furlough, Michael

    2010-01-01

    Background/Context: The open access movement has successfully drawn attention to economic and political aspects of scholarly communication through a significant body of commentary that debates the merits of open access and the potential damage it may do to scholarly publishing. Researchers within the field of education research, notably John…

  7. Open-Access Electronic Textbooks: An Overview

    Science.gov (United States)

    Ovadia, Steven

    2011-01-01

    Given the challenging economic climate in the United States, many academics are looking to open-access electronic textbooks as a way to provide students with traditional textbook content at a more financially advantageous price. Open access refers to "the free and widely available information throughout the World Wide Web. Once an article's…

  8. Experimenteren met een Open Access Fonds

    NARCIS (Netherlands)

    De Leeuwe, J.; Versteeg, A.M.C.

    2012-01-01

    Om Open Access onder de eigen medewerkers te promoten, beschikt TU Delft over een Open Access Fonds. Wat heeft dit fonds de afgelopen jaren opgeleverd? Anke Versteeg en Just de Leeuwe bespreken de resultaten en belichten en passant ook nieuwe ontwikkelingen. Engelse versie is zonder tabellen en

  9. A New Era of Open Access?

    Science.gov (United States)

    Mercieca, Paul; Macauley, Peter

    2008-01-01

    There has been a push for open access journals for more than a decade in a higher education and research environment in which the "publish or perish" syndrome is as dominant as ever. This article examines the success, or otherwise, of open access schemes in light of the Excellence in Research for Australia (ERA) initiative. It compares…

  10. Open access publishing in physics gains momentum

    CERN Multimedia

    2006-01-01

    "The first meeting of European particle physics funding agencies took place today at CERN to establish a consortium for Open Access publishing in particle physics, SCOAP3. This is the first time an antire scientific field is exploring the conversion of its reader-paid journals into an author-paid Open Access format." (1 page)

  11. Experimenteren met een Open Access Fonds

    NARCIS (Netherlands)

    De Leeuwe, J.; Versteeg, A.M.C.

    2012-01-01

    Om Open Access onder de eigen medewerkers te promoten, beschikt TU Delft over een Open Access Fonds. Wat heeft dit fonds de afgelopen jaren opgeleverd? Anke Versteeg en Just de Leeuwe bespreken de resultaten en belichten en passant ook nieuwe ontwikkelingen. Engelse versie is zonder tabellen en nie

  12. Open Access, Education Research, and Discovery

    Science.gov (United States)

    Furlough, Michael

    2010-01-01

    Background/Context: The open access movement has successfully drawn attention to economic and political aspects of scholarly communication through a significant body of commentary that debates the merits of open access and the potential damage it may do to scholarly publishing. Researchers within the field of education research, notably John…

  13. A New Era of Open Access?

    Science.gov (United States)

    Mercieca, Paul; Macauley, Peter

    2008-01-01

    There has been a push for open access journals for more than a decade in a higher education and research environment in which the "publish or perish" syndrome is as dominant as ever. This article examines the success, or otherwise, of open access schemes in light of the Excellence in Research for Australia (ERA) initiative. It compares…

  14. Open Access and Civic Scientific Information Literacy

    Science.gov (United States)

    Zuccala, Alesia

    2010-01-01

    Introduction: We examine how residents and citizens of The Netherlands perceive open access to acquire preliminary insight into the role it might play in cultivating civic scientific literacy. Open access refers to scientific or scholarly research literature available on the Web to scholars and the general public in free online journals and…

  15. Open-Access Electronic Textbooks: An Overview

    Science.gov (United States)

    Ovadia, Steven

    2011-01-01

    Given the challenging economic climate in the United States, many academics are looking to open-access electronic textbooks as a way to provide students with traditional textbook content at a more financially advantageous price. Open access refers to "the free and widely available information throughout the World Wide Web. Once an article's…

  16. Open Access publicering på Metropol

    DEFF Research Database (Denmark)

    Azbi, Trine; Larsen, Bente; Møbjerg, Anna Christine Meinertz

    2016-01-01

    Resultater af en afdækning og analyse af Open Access (OA) publicering på Professionshøjskolen Metropol......Resultater af en afdækning og analyse af Open Access (OA) publicering på Professionshøjskolen Metropol...

  17. Open Access policy guidelines for research institutions

    OpenAIRE

    PASTEUR4OA

    2015-01-01

    This presentation draws on the Policy Guidelines for institutions. The guidelines aim to assist in the development of efficient Open Access policies among institutions. They provide the context, the process and a model policy (template) that will enable [funders/institutions] to develop and implement their own Open Access policy

  18. Open Access policy guidelines for research funders

    OpenAIRE

    PASTEUR4OA

    2015-01-01

    This presentation draws on the Policy Guidelines for funders. The guidelines aim to assist in the development of efficient Open Access policies among funders. They provide the context, the process and a model policy (template) that will enable [funders/institutions] to develop and implement their own Open Access policy

  19. Diagnostic Yield of Microscopic Colitis in Open Access Endoscopy Center.

    Science.gov (United States)

    Ellingson, Derek; Miick, Ronald; Chang, Faye; Hillard, Robert; Choudhary, Abhishek; Ashraf, Imran; Bechtold, Matthew; Diaz-Arias, Alberto

    2011-08-01

    The diagnostic yield in open access endoscopy has been evaluated which generally support the effectiveness and efficiency of open access endoscopy. With a few exceptions, diagnostic yield studies have not been performed in open access endoscopy for more specific conditions. Therefore, we conducted a study to determine the efficiency of open access endoscopy in the detection of microscopic colitis as compared to traditional referral via a gastroenterologist. A retrospective search of the pathology database at the University of Missouri for specimens from a local open access endoscopy center was conducted via SNOMED code using the terms: "microscopic", "lymphocytic", "collagenous", "spirochetosis", "focal active colitis", "melanosis coli" and "histopathologic" in the diagnosis line for the time period between January 1, 2004 and May 25, 2006. Specimens and colonoscopy reports were reviewed by a single pathologist. Of 266 consecutive patients with chronic diarrhea and normal colonoscopies, the number of patients with microscopic disease are as follows: Lymphocytic colitis (n = 12, 4.5%), collagenous colitis (n = 17, 6.4%), focal active colitis (n = 15, 5.6%), and spirochetosis (n = 2, 0.4%). The diagnostic yield of microscopic colitis in this study of an open access endoscopy center does not differ significantly from that seen in major medical centers. In terms of diagnostic yield, open access endoscopy appears to be as effective in diagnosing microscopic colitis.

  20. Optimal access to large databases via networks

    Energy Technology Data Exchange (ETDEWEB)

    Munro, J.K.; Fellows, R.L.; Phifer, D. Carrick, M.R.; Tarlton, N.

    1997-10-01

    A CRADA with Stephens Engineering was undertaken in order to transfer knowledge and experience about access to information in large text databases, with results of queries and searches provided using the multimedia capabilities of the World Wide Web. Data access is optimized by the use of intelligent agents. Technology Logic Diagram documents published for the DOE facilities in Oak Ridge (K-25, X-10, Y-12) were chosen for this effort because of the large number of technologies identified, described, evaluated, and ranked for possible use in the environmental remediation of these facilities. Fast, convenient access to this information is difficult because of the volume and complexity of the data. WAIS software used to provide full-text, field-based search capability can also be used, through the development of an appropriate hierarchy of menus, to provide tabular summaries of technologies satisfying a wide range of criteria. The menu hierarchy can also be used to regenerate dynamically many of the tables that appeared in the original hardcopy publications, all from a single text database of the technology descriptions. Use of the Web environment permits linking many of the Technology Logic Diagram references to on-line versions of these publications, particularly the DOE Orders and related directives providing the legal requirements that were the basis for undertaking the Technology Logic Diagram studies in the first place.

  1. Open Access Scholarly Publications as OER

    Directory of Open Access Journals (Sweden)

    Terry Anderson

    2013-06-01

    Full Text Available This paper presents the rationale, common practices, challenges, and some personal anecdotes from a journal editor on the production, use, and re-use of peer-reviewed scholarly articles as open educational resources (OER. The scholarly and professional discourse related to open educational resources has largely focused on open learning objects, courseware, and textbooks. However, especially in graduate education, articles published in scholarly journals are often a major component of the course content in formal education. In addition, open access journal articles are critical to expanding access to knowledge by scholars in the developing world and in fostering citizen science, by which everyone has access to the latest academic information and research results. In this article, I highlight some of the challenges, economic models, and evidence for quality of open access journal content and look at new affordances provided by the Net for enhanced functionality, access, and distribution.In the 17 years since I graduated with a doctorate degree, the climate and acceptance of open access publishing has almost reversed itself. I recall a conversation with my PhD supervisor in which he argued that publishing online was not a viable option as the product would not have permanency, scholarly recognition, or the prestige of a paper publication. His comments reflect the confusion between online resources and those described as open access, but as well illustrate the change in academic acceptance and use of open access products during the past decade. The evolution from paper to online production and consumption is a disruptive technology in which much lower cost and increased accessibility of online work opens the product to a completely new group of potential users. In the case of OER these consumers are primarily students, but certainly access to scholars from all parts of the globe and the availability to support citizen science (Silvertown, 2009

  2. Update History of This Database - Open TG-GATEs Pathological Image Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open... TG-GATEs Pathological Image Database Update History of This Database Date Update contents 2012/05/24 Open... TG-GATEs Pathological Image Database English archive site is opened. 2012/03/30 Open TG-GATEs Pathologica...Contact Us Update History of This Database - Open TG-GATEs Pathological Image Database | LSDB Archive ...

  3. Open Access Publishing - Strengths and Strategies

    Science.gov (United States)

    Rasmussen, Martin

    2010-05-01

    The journal crisis and the demand for free accessibility to the results of publicly funded research were the main drivers of the Open Access movement since the late 1990's. Besides many academic institutions that support the different ways of Open Access publishing, there is a growing number of publishing houses that are specialized on this new access and business model of scholarly literature. The lecture provides an overview of the different kinds of Open Access publishing, discusses the variety of underlying business models, names the advantages and potentials for researches and the public, and overcomes some objections against Open Access. Besides the increased visibility and information supply, the topic of copyrights and exploitation rights will be discussed. Furthermore, it is a central aim of the presentation to show that Open Access does not only support full peer-review, but also provides the potential for even enhanced quality assurance. The financing of business models based on open accessible literature is another important part to be outlined in the lecture.

  4. Open Access Policy for CERN Physics Publications

    CERN Multimedia

    2014-01-01

    CERN is committed to Open Access. It represents one of the values written in our Convention sixty years ago and is increasingly important for our Member States.   In the last edition of the Bulletin, this article described how CERN is doing with regards to open access publishing today. On Thursday this week, the Open Access Policy for CERN Physics Publications* was endorsed by the Scientific Information Policy Board (SIPB) and approved by the Director-General the same day . For any clarifications regarding the policy, please contact the Scientific Information Service library.desk@cern.ch. * A French version of the policy will be made available shortly.

  5. Approaches to Open Access in Scientific Publishing

    CERN Document Server

    Harnad, J

    2008-01-01

    Approaches to scientific journal publishing that provide free access to all readers are challenging the standard subscription-based model. But in domains that have a well-functioning system of publicly accessible preprint repositories like arXiv, Open Access is already effectively available. In physics, such repositories have long coexisted constructively with refereed, subscription based journals. Trying to replace this by a system based on journals whose revenue is derived primarily from fees charged to authors is unlikely to provide a better guarantee of Open Access, and may be in conflict with the maintenance of high quality standards.

  6. The ethics of open access publishing.

    Science.gov (United States)

    Parker, Michael

    2013-03-22

    Should those who work on ethics welcome or resist moves to open access publishing? This paper analyses arguments in favour and against the increasing requirement for open access publishing and considers their implications for bioethics research. In the context of biomedical science, major funders are increasingly mandating open access as a condition of funding and such moves are also common in other disciplines. Whilst there has been some debate about the implications of open-access for the social sciences and humanities, there has been little if any discussion about the implications of open access for ethics. This is surprising given both the central role of public reason and critique in ethics and the fact that many of the arguments made for and against open access have been couched in moral terms. In what follows I argue that those who work in ethics have a strong interest in supporting moves towards more open publishing approaches which have the potential both to inform and promote richer and more diverse forms of public deliberation and to be enriched by them. The importance of public deliberation in practical and applied ethics suggests that ethicists have a particular interest in the promotion of diverse and experimental forms of publication and debate and in supporting new, more creative and more participatory approaches to publication.

  7. Open Access publishing in physics gains momentum

    CERN Multimedia

    2006-01-01

    The first meeting of European particle physics funding agencies took place on 3 November at CERN to establish a consortium for Open Access publishing in particle physics, SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics). Open Access could transform the academic publishing world, with a great impact on research. The traditional model of research publication is funded through reader subscriptions. Open Access will turn this model on its head by changing the funding structure of research results, without increasing the overall cost of publishing. Instead of demanding payment from readers, publications will be distributed free of charge, financed by funding agencies via laboratories and the authors. This new concept will bring greater benefits and broaden opportunities for researchers and funding agencies by providing unrestricted distribution of the results of publicly funded research. The meeting marked a positive step forward, with international support from laboratories, fundin...

  8. Open Access to essential health care information

    Directory of Open Access Journals (Sweden)

    Pandey Manoj

    2004-12-01

    Full Text Available Abstract Open Access publishing is a valuable resource for the synthesis and distribution of essential health care information. This article discusses the potential benefits of Open Access, specifically in terms of Low and Middle Income (LAMI countries in which there is currently a lack of informed health care providers – mainly a consequence of poor availability to information. We propose that without copyright restrictions, Open Access facilitates distribution of the most relevant research and health care information. Furthermore, we suggest that the technology and infrastructure that has been put in place for Open Access could be used to publish download-able manuals, guides or basic handbooks created by healthcare providers in LAMI countries.

  9. African Journals Online: Open Access Titles

    African Journals Online (AJOL)

    AFRREV IJAH: An International Journal of Arts and Humanities View Journal ... is Open Access. Ethiopian Journal of Environmental Studies and Management ... Journal of Language, Technology & Entrepreneurship in Africa View Journal ...

  10. [The publishing industry against open access journals].

    Science.gov (United States)

    Camargo Junior, Kenneth Rochel de

    2012-12-01

    Open-access journal publishing has significantly grown in recent years. Restricted access publications have, in turn, increasing access costs as they benefit from a unique economic model in which relevant work and essential inputs are provided free of charge to vendors who have a captive market that has almost no competition. An additional issue typical of industries that work under the copyright regime is that the oligopoly market structure of the publishing industry which in turn further contributes to increase their products' prices. Mandatory open-access policies, as determined by the NIH, constitute a threat to this business model and are being challenged by the industry on several fronts, including the passage of legislation to undermine these initiatives. The purpose of this commentary article was to review key aspects of this confrontation and to suggest potential strategies for encouraging open-access publishing in Brazil.

  11. Open access and scholarly communication, part 4

    CERN Document Server

    Eden, Brad

    2009-01-01

    This fourth e-book on the subject of open access in the academic field includes a Latin American case study on open access penetration, a paper from Germany on the promotion of OA illustrated by a project at the University of Konstanz, and a case study on OA at Bioline International, a non-profit scholarly publications aggregator, distributor, publisher and publishing assistance service.

  12. Open Access Publishing: A Literature Review

    OpenAIRE

    Frosio, Giancarlo; Derclaye, Estelle

    2014-01-01

    Within the context of the Centre for Copyright and New Business Models in the Creative Economy (CREATe) research scope, this literature review investigates the current trends, advantages, disadvantages, problems and solutions, opportunities and barriers in Open Access Publishing (OAP), and in particular Open Access (OA) academic publishing.  This study is intended to scope and evaluate current theory and practice concerning models for OAP and engage with intellectual, legal and economic ...

  13. Open Access kortlægning 2011

    DEFF Research Database (Denmark)

    Elbæk, Mikael; Hansen, Tove Juul; Larsen, Asger V.

    Denne rapport viser, at det faglige domæne er en meget stærk faktor i forhold til, hvor stor en andel af forskningsoutputtet, der er open access. Rapporten viser, at der er forskelle mellem universiteterne som ikke alene kan forklares med faglige faktorer, men forklaringerne må findes andre steder......, det kunne være lokale procedurer, kultur eller strukturer (politikker). Dette tager rapporten dog ikke stilling til. Andelen af gylden open access ligger relativt stabilt på tværs af universiteterne, med en andel mellem 6 – 10 % af den samlede publicering i peer reviewede tidsskrifter. Dermed er grøn...... open access den væsentligste faktor som adskiller universiteternes samlede open access andel. Endvidere viser rapporten, at der er et meget stort uudnyttet open access potentiale på alle universiteterne. Faktisk kunne mere end 5.000 flere BFI-pointgivende artikler være open access, dvs. at 71 % af det...

  14. Particle physicists want to expand open access

    CERN Multimedia

    Kaiser, Jocelyn

    2006-01-01

    "Particle physicists have come up with a novel way to promote free, immediate access to journal articles. Led by CERN, the giant lab near Geneva, Switzerland, thay want to raise at lesat $6 million a year to begin buying open access to all published papers in their field." (1/2 page)

  15. Particle physicists want to expand open access

    CERN Multimedia

    Kaiser, Jocelyn

    2006-01-01

    "Particle physicists have come up with a novel way to promote free, immediate access to journal articles. Led by CERN, the gian lab near Geneva, Switzerland, they want to raise at least $6 million a year to begin buying open access to all published papers in their field." (1 page)

  16. Development of Disruptive Open Access Journals

    Science.gov (United States)

    Anderson, Terry; McConkey, Brigette

    2009-01-01

    Open access (OA) publication has emerged, with disruptive effects, as a major outlet for scholarly publication. OA publication is usually associated with on-line distribution and provides access to scholarly publications to anyone, anywhere--regardless of their ability to pay subscription fees or their association with an educational institution.…

  17. Librarians and Libraries Supporting Open Access Publishing

    Science.gov (United States)

    Richard, Jennifer; Koufogiannakis, Denise; Ryan, Pam

    2009-01-01

    As new models of scholarly communication emerge, librarians and libraries have responded by developing and supporting new methods of storing and providing access to information and by creating new publishing support services. This article will examine the roles of libraries and librarians in developing and supporting open access publishing…

  18. Open access in the critical care environment.

    Science.gov (United States)

    South, Tabitha; Adair, Brigette

    2014-12-01

    Open access has become an important topic in critical care over the last 3 years. In the past, critical care had restricted access and set visitation guidelines to protect patients. This article provides a review of the literature related to open access in the critical care environment, including the impact on patients, families, and health care providers. The ultimate goal is to provide care centered on patients and families and to create a healing environment to ensure safe passage of patients through their hospital stays. This outcome could lead to increased patient/family satisfaction.

  19. Open access semantic aware business intelligence

    OpenAIRE

    Romero Moral, Óscar; Abelló Gamazo, Alberto

    2013-01-01

    The vision of an interconnected and open Web of data is, still, a chimera far from being accomplished. Fortunately, though, one can find several evidences in this direction and despite the technical challenges behind such approach recent advances have shown its feasibility. Semantic-aware formalisms (such as RDF and ontology languages) have been successfully put in practice in approaches such as Linked Data, whereas movements like Open Data have stressed the need of a new open access paradigm...

  20. Geothermal NEPA Database on OpenEI (Poster)

    Energy Technology Data Exchange (ETDEWEB)

    Young, K. R.; Levine, A.

    2014-09-01

    The National Renewable Energy Laboratory (NREL) developed the Geothermal National Environmental Policy Act (NEPA) Database as a platform for government agencies and industry to access and maintain information related to geothermal NEPA documents. The data were collected to inform analyses of NEPA timelines, and the collected data were made publically available via this tool in case others might find the data useful. NREL staff and contractors collected documents from agency websites, during visits to the two busiest Bureau of Land Management (BLM) field offices for geothermal development, and through email and phone call requests from other BLM field offices. They then entered the information into the database, hosted by Open Energy Information (http://en.openei.org/wiki/RAPID/NEPA). The long-term success of the project will depend on the willingness of federal agencies, industry, and others to populate the database with NEPA and related documents, and to use the data for their own analyses. As the information and capabilities of the database expand, developers and agencies can save time on new NEPA reports by accessing a single location to research related activities, their potential impacts, and previously proposed and imposed mitigation measures. NREL used a wiki platform to allow industry and agencies to maintain the content in the future so that it continues to provide relevant and accurate information to users.

  1. Web accessibility and open source software.

    Science.gov (United States)

    Obrenović, Zeljko

    2009-07-01

    A Web browser provides a uniform user interface to different types of information. Making this interface universally accessible and more interactive is a long-term goal still far from being achieved. Universally accessible browsers require novel interaction modalities and additional functionalities, for which existing browsers tend to provide only partial solutions. Although functionality for Web accessibility can be found as open source and free software components, their reuse and integration is complex because they were developed in diverse implementation environments, following standards and conventions incompatible with the Web. To address these problems, we have started several activities that aim at exploiting the potential of open-source software for Web accessibility. The first of these activities is the development of Adaptable Multi-Interface COmmunicator (AMICO):WEB, an infrastructure that facilitates efficient reuse and integration of open source software components into the Web environment. The main contribution of AMICO:WEB is in enabling the syntactic and semantic interoperability between Web extension mechanisms and a variety of integration mechanisms used by open source and free software components. Its design is based on our experiences in solving practical problems where we have used open source components to improve accessibility of rich media Web applications. The second of our activities involves improving education, where we have used our platform to teach students how to build advanced accessibility solutions from diverse open-source software. We are also partially involved in the recently started Eclipse projects called Accessibility Tools Framework (ACTF), the aim of which is development of extensible infrastructure, upon which developers can build a variety of utilities that help to evaluate and enhance the accessibility of applications and content for people with disabilities. In this article we briefly report on these activities.

  2. Open Access and repositories beyond green and gold

    CERN Document Server

    2007-01-01

    Access to previous results and their reuse in new research are at the very basis of scientific progress. In the era of e-Science and when the Open Access paradigm is changing scholarly communication, there is an unprecedented need for rapid and effective online access to scientific information. High-Energy Physics (HEP) pioneered innovation in scholarly communication with the invention of the Web, originally a vehicle of scientific information, and with the inception of online preprint repositories, introducing Open Access to preliminary scientific results. With the imminent start-up of the CERN LHC accelerator, one of the flagships of European science, the HEP community urgently needs a new platform for scientific information. A multi-disciplinary collaboration of academies, research laboratories and industrial partners has developed a vision to build such an innovative e-infrastructure: HEPIS (High Energy Physics Information System). HEPIS will integrate present European and American databases and repositor...

  3. Open Access Publishing in Particle Physics

    CERN Document Server

    2007-01-01

    Particle Physics, often referred to as High Energy Physics (HEP), spearheaded the Open Access dissemination of scientific results with the mass mailing of preprints in the pre-Web era and with the launch of the arXiv preprint system at the dawn of the '90s. The HEP community is now ready for a further push to Open Access while retaining all the advantages of the peerreview system and, at the same time, bring the spiralling cost of journal subscriptions under control. I will present a plan for the conversion to Open Access of HEP peer-reviewed journals, through a consortium of HEP funding agencies, laboratories and libraries: SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics). SCOAP3 will engage with scientific publishers towards building a sustainable model for Open Access publishing, which is as transparent as possible for HEP authors. The current system in which journals income comes from subscription fees is replaced with a scheme where SCOAP3 compensates publishers for the costs...

  4. The Crisis in Scholarly Communication, Open Access, and Open Data Policies: The Libraries' Perspective

    Science.gov (United States)

    Besara, Rachel

    2015-03-01

    For years the cost of STEM databases have exceeded the rate of inflation. Libraries have reallocated funds for years to continue to provide support to their scientific communities, but they are reaching a point at many institutions where they are no longer able to provide access to many databases considered standard to support research. A possible or partial alleviation to this problem is the federal open access mandate. However, this shift challenges the current model of publishing and data management in the sciences. This talk will discuss these topics from the perspective of research libraries supporting physics and the STEM disciplines.

  5. Open Access This is an Open Access article distributed under the ...

    African Journals Online (AJOL)

    Open Access This is an Open Access article distributed under the terms of the ... ONLINE (AJOL) · Journals · Advanced Search · USING AJOL · RESOURCES ... the capacity and contribution of Nigerian Nurses to health care research, it is ... Aim: To review the academic and research preparedness of Nigerian nurses in ...

  6. Editorial: Making GIScience Research More Open Access

    CERN Document Server

    Jiang, Bin

    2013-01-01

    This is the editorial for the special issue on "data-intensive geospatial computing", which I guest edited with the International Journal of Geographical Information Science (Taylor & Francis). As remarked in the editorial, the special issue is particularly special in the sense that all source and data are published together with the published papers. This editorial elaborates on scholarly communication, with particular attention to publishing data alongside papers and the emergence of open access journals, in order to make our research more open access.

  7. CERN Confirms commitment to Open Access

    CERN Multimedia

    2005-01-01

    The CERN Library Information desk.At a meeting on the Wednesday before Easter, the Executive Committee endorsed a policy of open access to all the laboratory's results, as expressed in the document ‘Continuing CERN action on Open Access' (http://cds.cern.ch/record/828991/files/open-2005-006.pdf), released by its Scientific Information Policy Board (SIPB) earlier in the month. "This underlines CERN's commitment to sharing the excitement of fundamental research with as wide an audience as possible", said Guido Altarelli, current SIPB chairman. Open Access to scientific knowledge is today the goal of an increasing component of the worldwide scientific community. It is a concept, made possible by new electronic tools, which would bring enormous benefits to all readers by giving them free access to research results. CERN has implicitly supported such moves from its very beginning. Its Convention (http://cds.cern.ch/record/330625/files/cm-p00046871.pdf), adopted in 1953, requires openness, stipulating that "......

  8. Facilitating Full-text Access to Biomedical Literature Using Open Access Resources.

    Science.gov (United States)

    Kang, Hongyu; Hou, Zhen; Li, Jiao

    2015-01-01

    Open access (OA) resources and local libraries often have their own literature databases, especially in the field of biomedicine. We have developed a method of linking a local library to a biomedical OA resource facilitating researchers' full-text article access. The method uses a model based on vector space to measure similarities between two articles in local library and OA resources. The method achieved an F-score of 99.61%. This method of article linkage and mapping between local library and OA resources is available for use. Through this work, we have improved the full-text access of the biomedical OA resources.

  9. Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

    Science.gov (United States)

    Gouy, Manolo; Delmotte, Stéphane

    2008-04-01

    The ACNUC biological sequence database system provides powerful and fast query and extraction capabilities to a variety of nucleotide and protein sequence databases. The collection of ACNUC databases served by the Pôle Bio-Informatique Lyonnais includes the EMBL, GenBank, RefSeq and UniProt nucleotide and protein sequence databases and a series of other sequence databases that support comparative genomics analyses: HOVERGEN and HOGENOM containing families of homologous protein-coding genes from vertebrate and prokaryotic genomes, respectively; Ensembl and Genome Reviews for analyses of prokaryotic and of selected eukaryotic genomes. This report describes the main features of the ACNUC system and the access to ACNUC databases from any internet-connected computer. Such access was made possible by the definition of a remote ACNUC access protocol and the implementation of Application Programming Interfaces between the C, Python and R languages and this communication protocol. Two retrieval programs for ACNUC databases, Query_win, with a graphical user interface and raa_query, with a command line interface, are also described. Altogether, these bioinformatics tools provide users with either ready-to-use means of querying remote sequence databases through a variety of selection criteria, or a simple way to endow application programs with an extensive access to these databases. Remote access to ACNUC databases is open to all and fully documented (http://pbil.univ-lyon1.fr/databases/acnuc/acnuc.html).

  10. Update History of This Database - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open TG-GATEs Up...date History of This Database Date Update contents 2012/07/04 A part of the hematology and b...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Open TG-GATEs | LSDB Archive ...

  11. Open DOAR the Directory of Open Access Repositories

    CERN Document Server

    CERN. Geneva

    2005-01-01

    The last year has seen wide-spread growth in the idea of using open access repositories as a part of a research institution's accepted infrastructure. Policy development from institutions and funding bodies has also supported the growth of the repository network. The next stage of expansion will be in the provision of services and cross-repository facilities and resources. Of course, it is hoped that these will then establish a feed-back loop to encourage repository population and further repository establishment, as the potential of open access to research materials is realised. The growth of repositories has been organic, with a variety of different repositories based in departments, institutions, funding agencies or subject communities, with a range of content, both in type and subject. Existing repositories are expanding their holdings, from eprints to associated research data-sets, or with learning objects and multimedia material. This presentation will look at the development of the Directory of Open Ac...

  12. Monitoring Compliance with Open Access policies

    OpenAIRE

    Picarra, Mafalda

    2015-01-01

    In parallel to implementing Open Access policies, institutions and research funders are also engaged in developing mechanisms to monitor compliance with the existing policies. This study highlights why policy compliance must be monitored and how it can be done. A series of case studies illustrate where compliance is being effectively monitored.

  13. Open Access for International Criminal Lawyers

    NARCIS (Netherlands)

    van Laer, Coen

    This study investigates to what extent Open Access is useful for international criminal lawyers. Free reuse and distribution may be particularly advantageous for the audience in less resourceful countries. And individual authors need visibility to promote their academic reputation. However, many

  14. EPAct 2005: A Roadmap for Open Access

    Energy Technology Data Exchange (ETDEWEB)

    Morrison, Jay A.

    2005-12-01

    After nine years of negotiation characterized by significant philosophical swings, Congress came together in the middle to support a moderate vision of open access intended primarily to enable load-serving entities to obtain the transmission service they need to meet the long-term needs of their consumers reliably and economically.

  15. Open Access for International Criminal Lawyers

    NARCIS (Netherlands)

    van Laer, Coen

    2016-01-01

    This study investigates to what extent Open Access is useful for international criminal lawyers. Free reuse and distribution may be particularly advantageous for the audience in less resourceful countries. And individual authors need visibility to promote their academic reputation. However, many pub

  16. Improving Open Access through Prior Learning Assessment

    Science.gov (United States)

    Yin, Shuangxu; Kawachi, Paul

    2013-01-01

    This paper explores and presents new data on how to improve open access in distance education through using prior learning assessments. Broadly there are three types of prior learning assessment (PLAR): Type-1 for prospective students to be allowed to register for a course; Type-2 for current students to avoid duplicating work-load to gain…

  17. Quantum Game Theory and Open Access Publishing

    CERN Document Server

    Hanauske, M; Dugall, B; Bernius, Steffen; Dugall, Berndt; Hanauske, Matthias

    2006-01-01

    The digital revolution of the information age and in particular the sweeping changes of scientific communication brought about by computing and novel communication technology, potentiate global, high grade scientific information for free. The arXiv for example is the leading scientific communication platform, mainly for mathematics and physics, where everyone in the world has free access on. While in some scientific disciplines the open access way is successfully realized, other disciplines (e.g. humanities and social sciences) dwell on the traditional path, even though many scientists belonging to these communities approve the open access principle. In this paper we try to explain these different publication patterns by using a game theoretical approach. Based on the assumption, that the main goal of scientists is the maximization of their reputation, we model different possible game settings, namely a zero sum game, the prisoners' dilemma case and a version of the stag hunt game, that show the dilemma of sc...

  18. Open-access rules stimulate technology questions

    Energy Technology Data Exchange (ETDEWEB)

    Hansen, T.

    1996-07-01

    Since the Federal Energy Regulatory Commission (FERC) issued its Notice of Proposed Rulemaking (NOPR) for transmission open access on March 29, 1995, the electric utility industry has been in a tailspin. The open-access transmission rules require electric utilities that own and/or control facilities used for transmission of electricity to give all power generators access to their power lines, while charging the power generators the same transportation rate the utilities charge themselves. Since its birth, utilities have been trying to figure out how they will be affected by the NOPR. They have also been trying to determine what type of technology they will use to meet the requirements. To date, there is still not a clear-cut answer to this question.

  19. Publishing in Open Access Education Journals: The Authors' Perspectives

    Science.gov (United States)

    Coonin, Bryna; Younce, Leigh M.

    2010-01-01

    Open access publishing is now an accepted method of scholarly communication. However, the greatest traction for open access publishing thus far has been in the sciences. Penetration of open access publishing has been much slower among the social sciences. This study surveys 309 authors from recent issues of open access journals in education to…

  20. Publishing in Open Access Education Journals: The Authors' Perspectives

    Science.gov (United States)

    Coonin, Bryna; Younce, Leigh M.

    2010-01-01

    Open access publishing is now an accepted method of scholarly communication. However, the greatest traction for open access publishing thus far has been in the sciences. Penetration of open access publishing has been much slower among the social sciences. This study surveys 309 authors from recent issues of open access journals in education to…

  1. 50 CFR 660.312 - Open access fishery-prohibitions.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-prohibitions. 660.312... Groundfish-Open Access Fisheries § 660.312 Open access fishery—prohibitions. General groundfish prohibitions..., possess, or land groundfish in excess of the landing limit for the open access fishery without having...

  2. 50 CFR 660.311 - Open access fishery-definitions.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-definitions. 660.311... Groundfish-Open Access Fisheries § 660.311 Open access fishery—definitions. General definitions for the... specific to the open access fishery covered in this subpart and are in addition to those specified at §...

  3. Open Access in Turkey and Comparison with Other Countries

    Directory of Open Access Journals (Sweden)

    Bülent Karasözen

    2010-06-01

    Full Text Available The number of open access journals and institutional repositories, as a product of open access movement has grown rapidly in recent years. Open access research articles remove the barriers in accessing scientific research results and accelerate the communication among the scientist worldwide. In many countries the number of institutional archives and open access journal are increasing. In this article, the recent developments in open access journals, institutional repositories and open courseware in Turkey are summarized and compared with some countries. A sample mandatory institutional repository policy document is given with some suggestion for establishing open access in Turkey.

  4. Quantum game theory and open access publishing

    Science.gov (United States)

    Hanauske, Matthias; Bernius, Steffen; Dugall, Berndt

    2007-08-01

    The digital revolution of the information age and in particular the sweeping changes of scientific communication brought about by computing and novel communication technology, potentiate global, high grade scientific information for free. The arXiv, for example, is the leading scientific communication platform, mainly for mathematics and physics, where everyone in the world has free access on. While in some scientific disciplines the open access way is successfully realized, other disciplines (e.g. humanities and social sciences) dwell on the traditional path, even though many scientists belonging to these communities approve the open access principle. In this paper we try to explain these different publication patterns by using a game theoretical approach. Based on the assumption, that the main goal of scientists is the maximization of their reputation, we model different possible game settings, namely a zero sum game, the prisoners’ dilemma case and a version of the stag hunt game, that show the dilemma of scientists belonging to “non-open access communities”. From an individual perspective, they have no incentive to deviate from the Nash equilibrium of traditional publishing. By extending the model using the quantum game theory approach it can be shown, that if the strength of entanglement exceeds a certain value, the scientists will overcome the dilemma and terminate to publish only traditionally in all three settings.

  5. Wie messen wir unseren Open-Access-Anteil?

    OpenAIRE

    Tullney, Marco

    2016-01-01

    Open Access ist auf dem Siegeszug. Die „Open-Access-Transformation“ hat sich als neues Schlagwort etabliert, und Verlage konzentrieren sich mehrheitlich darauf, weitere Einnahmen durch Open Access zu generieren, statt die Entwicklung zu bekämpfen. Die von wissenschaftlichen Einrichtungen getragenen Kosten für Open-Access-Artikel steigen (ganz zu schweigen vom enormen Arbeitsaufwand, den manche der zugrundeliegenden Modelle mit sich bringen). Open Access ist ein Thema, das prominent in Auflage...

  6. Publishing in open access era: focus on respiratory journals.

    Science.gov (United States)

    Dai, Ni; Xu, Dingyao; Zhong, Xiyao; Li, Li; Ling, Qibo; Bu, Zhaode

    2014-05-01

    We have entered an open access publishing era. The impact and significance of open access is still under debate after two decades of evolution. Open access journals benefit researchers and the general public by promoting visibility, sharing and communicating. Non-mainstream journals should turn the challenge of open access into opportunity of presenting best research articles to the global readership. Open access journals need to optimize their business models to promote the healthy and continuous development.

  7. CytoJournal joins 'open access' philosophy

    Directory of Open Access Journals (Sweden)

    Shidham Vinod B

    2004-07-01

    Full Text Available Abstract Welcome to CytoJournal! We would like to introduce you to your journal, one that is run by and for the scientific cytopathology community with incontestable benefits of Open Access, and support from Cytopathology Foundation, Inc. http://www.cytopathology-foundation.org/index.htmlCytoJournal is a peer-reviewed, PubMed indexed, online journal, publishing research in the field of cytopathology and related areas, with world wide free access. Authors submitting to CytoJournal retain the copyright to their hard earned work.

  8. Open Access And Openly Accessible: A Study Of Scientific Publications Shared Via The Internet

    National Research Council Canada - National Science Library

    Jonathan D. Wren

    2005-01-01

    ... of the article, and to what degree open access publications are shared on non-journal websites. Design The internet was searched using an application programming interface to Google, a popular and freely available search engine...

  9. World Ocean Database 2013 (NCEI Accession 0117075)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The World Ocean Database (WOD) is the World’s largest publicly available uniform format quality controlled ocean profile dataset. Ocean profile data are sets of...

  10. Embedded Systems Programming: Accessing Databases from Esterel

    Directory of Open Access Journals (Sweden)

    White David

    2008-01-01

    Full Text Available Abstract A current limitation in embedded controller design and programming is the lack of database support in development tools such as Esterel Studio. This article proposes a way of integrating databases and Esterel by providing two application programming interfaces (APIs which enable the use of relational databases inside Esterel programs. As databases and Esterel programs are often executed on different machines, result sets returned as responses to database queries may be processed either locally and according to Esterel's synchrony hypothesis, or remotely along several of Esterel's execution cycles. These different scenarios are reflected in the design and usage rules of the two APIs presented in this article, which rely on Esterel's facilities for extending the language by external data types, external functions, and procedures, as well as tasks. The APIs' utility is demonstrated by means of a case study modelling an automated warehouse storage system, which is constructed using Lego Mindstorms robotics kits. The robot's controller is programmed in Esterel in a way that takes dynamic ordering information and the warehouse's floor layout into account, both of which are stored in a MySQL database.

  11. Embedded Systems Programming: Accessing Databases from Esterel

    Directory of Open Access Journals (Sweden)

    2009-03-01

    Full Text Available A current limitation in embedded controller design and programming is the lack of database support in development tools such as Esterel Studio. This article proposes a way of integrating databases and Esterel by providing two application programming interfaces (APIs which enable the use of relational databases inside Esterel programs. As databases and Esterel programs are often executed on different machines, result sets returned as responses to database queries may be processed either locally and according to Esterel’s synchrony hypothesis, or remotely along several of Esterel’s execution cycles. These different scenarios are reflected in the design and usage rules of the two APIs presented in this article, which rely on Esterel’s facilities for extending the language by external data types, external functions, and procedures, as well as tasks. The APIs’ utility is demonstrated by means of a case study modelling an automated warehouse storage system, which is constructed using Lego Mindstorms robotics kits. The robot’s controller is programmed in Esterel in a way that takes dynamic ordering information and the warehouse’s floor layout into account, both of which are stored in a MySQL database.

  12. Scalable Database Access Technologies for ATLAS Distributed Computing

    CERN Document Server

    Vaniachine, A

    2009-01-01

    ATLAS event data processing requires access to non-event data (detector conditions, calibrations, etc.) stored in relational databases. The database-resident data are crucial for the event data reconstruction processing steps and often required for user analysis. A main focus of ATLAS database operations is on the worldwide distribution of the Conditions DB data, which are necessary for every ATLAS data processing job. Since Conditions DB access is critical for operations with real data, we have developed the system where a different technology can be used as a redundant backup. Redundant database operations infrastructure fully satisfies the requirements of ATLAS reprocessing, which has been proven on a scale of one billion database queries during two reprocessing campaigns of 0.5 PB of single-beam and cosmics data on the Grid. To collect experience and provide input for a best choice of technologies, several promising options for efficient database access in user analysis were evaluated successfully. We pre...

  13. Open Access publishing in physics gains momentum

    CERN Multimedia

    2006-01-01

    "As if inventing the World-Wide Web were not revolutionary enough, the European Organisation for Nuclear Research (CERN) is now on its way to unleashing a paradigm shift in the world of academic publishing. For the first time ever, an entire scientific field is exploring the possibility of converting its reader-paid journals into an author-pai Open Access format." (1 page)

  14. Funding the Way to Open Access

    Institute of Scientific and Technical Information of China (English)

    Robert Terry

    2005-01-01

    The Wellcome Trust supports open access publishing via the author pays model and through the deposition of peer reviewed papers into PubMed Central. The costs of disseminating research and the author pays model should be seen as part of research costs and is estimated to be approximately 1% -2% of the grant funding budget. A PubMed Central version of the article adds value to the article through additional functions especially provide links between the literature and the data.

  15. Do open access data policies inhibit innovation?

    Science.gov (United States)

    Katzner, Todd E.

    2015-01-01

    There has been a great deal of attention paid recently to the idea of data sharing (Van Noorden 2014, Beardsley 2015, Nature Publishing Group2015, www.copdess.com). However, the vast majority of these arguments are in agreement and present as fait accompli the idea that data are a public good and that therefore, once published, they should become open access. In fact, although there are many good reasons for data sharing, there also are a number of cogent and coherent cases to be made against open-access policies (e.g., Fenichel and Skelly 2015). The goal of this piece is not to debate the relevance or accuracy of the points made in favor of data sharing but to elevate the discussion by pointing out key problems with open-access policies and to identify central issues that, if solved, will enhance the utility of data sharing to science and society.

  16. Open Access, Open Source and Digital Libraries: A Current Trend in University Libraries around the World

    Science.gov (United States)

    Krishnamurthy, M.

    2008-01-01

    Purpose: The purpose of this paper is to describe the open access and open source movement in the digital library world. Design/methodology/approach: A review of key developments in the open access and open source movement is provided. Findings: Open source software and open access to research findings are of great use to scholars in developing…

  17. Open Access, Open Source and Digital Libraries: A Current Trend in University Libraries around the World

    Science.gov (United States)

    Krishnamurthy, M.

    2008-01-01

    Purpose: The purpose of this paper is to describe the open access and open source movement in the digital library world. Design/methodology/approach: A review of key developments in the open access and open source movement is provided. Findings: Open source software and open access to research findings are of great use to scholars in developing…

  18. Achieving Open Access to Conservation Science

    Science.gov (United States)

    Fuller, Richard A; Lee, Jasmine R; Watson, James E M

    2014-01-01

    Conservation science is a crisis discipline in which the results of scientific enquiry must be made available quickly to those implementing management. We assessed the extent to which scientific research published since the year 2000 in 20 conservation science journals is publicly available. Of the 19,207 papers published, 1,667 (8.68%) are freely downloadable from an official repository. Moreover, only 938 papers (4.88%) meet the standard definition of open access in which material can be freely reused providing attribution to the authors is given. This compares poorly with a comparable set of 20 evolutionary biology journals, where 31.93% of papers are freely downloadable and 7.49% are open access. Seventeen of the 20 conservation journals offer an open access option, but fewer than 5% of the papers are available through open access. The cost of accessing the full body of conservation science runs into tens of thousands of dollars per year for institutional subscribers, and many conservation practitioners cannot access pay-per-view science through their workplace. However, important initiatives such as Research4Life are making science available to organizations in developing countries. We urge authors of conservation science to pay for open access on a per-article basis or to choose publication in open access journals, taking care to ensure the license allows reuse for any purpose providing attribution is given. Currently, it would cost $51 million to make all conservation science published since 2000 freely available by paying the open access fees currently levied to authors. Publishers of conservation journals might consider more cost effective models for open access and conservation-oriented organizations running journals could consider a broader range of options for open access to nonmembers such as sponsorship of open access via membership fees. Obtención de Acceso Abierto a la Ciencia de la Conservación Resumen La ciencia de la conservación es una

  19. Open access journals – what publishers offer, what researchers want

    CERN Document Server

    Dallmeier-Tiessen, Suenje; Goerner, Bettina; Hyppoelae, Jenni; Igo-Kemenes, Peter; Kahn, Deborah; Lamber, Simon; Lengenfelder, Anja; Leonard, Chris; Mele, Salvatore; Nowicka, Malgorzata; Polydoratou, Panayiota; Ross, David; Ruiz-Perez, Sergio; Schimmer, Ralf; Swaisland, Mark; van der Stelt, Wim

    2011-01-01

    The SOAP (Study of Open Access Publishing) project has analyzed the current supply and demand situation in the open access journal landscape. Starting from the Directory of Open Access Journals, several sources of data were considered, including journal websites and direct inquiries within the publishing industry to comprehensively map the present supply of online peer-reviewed OA journals. The demand for open access publishing is summarised, as assessed through a large-scale survey of researchers' opinions and attitudes. Some forty thousand answers were collected across disciplines and around the world, reflecting major support for the idea of open access, while highlighting drivers of and barriers to open access publishing.

  20. HCUP State Emergency Department Databases (SEDD) - Restricted Access File

    Data.gov (United States)

    U.S. Department of Health & Human Services — The State Emergency Department Databases (SEDD) contain the universe of emergency department visits in participating States. Restricted access data files are...

  1. Open Access to Content and Financial Innovation

    Directory of Open Access Journals (Sweden)

    Wesley Mendes-Da-Silva

    2015-08-01

    Full Text Available Over the last twenty years the world has experienced significant growth in the supply of knowledge as a result of the advent of the Internet and there has been a drastic reduction in the cost of acquiring or constructing relevant information. This has meant that various industries, like banks, commerce and even the public management sector have undergone a reconfiguration process. Similarly, universities and the publishers of scientific periodicals need to reflect on their future. After all, who is prepared to pay for content that can be freely accessed? In the wake of the change in the technological paradigm that characterizes communication, and driven by financial crises, we find the topic of Financial Innovation (Lerner, 2006. But this topic was already on the agenda even before the Internet appeared on the scene (Miller, 1986. At the beginning of May 2013, when we started putting together the Journal of Financial Innovation (JoFI an article entitled “Free-for-all”, which was published in the important British publication, The Economist, discussed the growth of open access scientific journals. At the time the British magazine stressed the practice adopted in the UK, which established open access journals as being the destination for research results. In essence, what is intended is to constitute a quality publication route without readers or authors being burdened with high costs, an area that is still responsible for large portions of the billionaire publishing market around the world. 

  2. "The Open Library at AU" (Athabasca University): Supporting Open Access and Open Educational Resources

    Science.gov (United States)

    Elliott, Colin; Fabbro, Elaine

    2015-01-01

    To address challenges that learners, course creators, librarians and academics involved with OER and MOOCs are facing when looking for scholarly materials, Athabasca University Library has initiated the development of "the Open Library at AU." This open library is a full library website that provides easy access to open and free…

  3. Electricity transactions in an open access market

    Energy Technology Data Exchange (ETDEWEB)

    Flory, J.

    1996-01-01

    The electric power industry is becoming increasingly competitive. A number of other regulated industries have recently been deregulated. Federal and state regulators are increasingly opening up the electric power industry to competition. These ideas have not suddenly been brought down from the mountain top. Rather, they are part of an evolution in the energy marketplace. A 1995 Winter Meeting panel session, sponsored by the IEEE PES Power System Engineering Committee, explored Electricity Transactions in an Open Access Market. Panelists included: Richard Tabors, chairman of Tabors Caramanis and Associates, and assistant director of MIT laboratory for Electromagnetic and Electronic Systems; Brad Leach, director of Electricity and Natural Gas Research at the New York Mercantile Exchange; Dennis Meany, vice president of Louis Dreyfus Electric Power, Inc.; Steve Kean, vice president of Enron Gas services Group; John Flory, principal in charge of the Western Division, Tabors Caramanis and Associates. This article summarizes the panel session by describing the evolution of deregulation, discussing the benefits of deregulation, describing what an electricity transaction might look like in this open access market, and describing the implications of this market for current participants and the possible contributions of new participants.

  4. Migration of MS Access Databases to Mendix Platform

    NARCIS (Netherlands)

    Boudale, T.

    2014-01-01

    This thesis is concerned with the migration of Microsoft Access databases to Mendix Platform. We investigate similarities and dierences between the data models of the two systems, discuss issues in regards to data migration and also examine possible options for migrating database queries. A tool was

  5. Open access in the world and Latin America: A review since the Budapest Open Access Initiative

    Directory of Open Access Journals (Sweden)

    Michelli Pereira da COSTA

    Full Text Available Abstract In 2012, the Open Access Movement to scientific information celebrated ten years of existence. The period, which represents the first stage of consolidation of the movement, has been analyzed to allow the planning of new phases. With the purpose of providing tools and contributing to these discussions, the article addresses the historical aspects of the international and regional constitution of Open Access Movement. The approach was developed from a descriptive temporal narrative of the main events and initiatives identified in the scientific literature on the subject. The elements discussed in the present study work were organized under two parameters. The first refers to a temporal perspective, defined from the publication of Budapest Open Access Initiative. The second is related to brief discussion of the participation of Latin America. As result, we present a timeline of open access in the world and in Latin America, showing the main aspects covered in the study. The goal of the study is achieved by the proposed systematization as we analyze the open access initiatives in Latin America and establish how they influenced and were influenced by other regions of the world.

  6. A database in ACCESS for assessing vaccine serious adverse events

    OpenAIRE

    Thomas RE; Jackson D.

    2015-01-01

    Roger E Thomas,1 Dave Jackson2,3 1Department of Family Medicine, G012 Health Sciences Centre, University of Calgary Medical School, Calgary, AB, Canada; 2Independent Research Consultant, Calgary, AB, Canada; 3Database Consultant, University of Calgary, Calgary, AB, Canada Purpose: To provide a free flexible database for use by any researcher for assessing reports of adverse events after vaccination. Results: A database was developed in Microsoft ACCESS to assess reports of serious adverse ev...

  7. Open Access Transmission and Renewable Energy Technologies

    Energy Technology Data Exchange (ETDEWEB)

    Porter, K.

    1996-09-01

    In April 1996, the Federal Regulatory Commission (PERC) approved Orders 888 and 889 and released a draft rule for public comment on capacity reservation tariffs (CRTs). Order No. 888 requires electric utilities to file transmission tariffs that would allow transmission access to third parties who want to conduct wholesale transactions, and Order No. 889 requires transmission-owning utilities to set up open access, same-time information systems (OASIS), using commercial software and Internet protocols. This paper discusses these Orders in detail, as well as some of the issues before FERC with implications for renewables, which include: transmission pricing; transmission terms and conditions; reassignment of transmission capacity; defining state and FERC jurisdiction over transmission and distribution; the pricing of ancillary services; and the adoption and implementation of independent system operators.

  8. Open Access Transmission and Renewable Energy Technologies

    Energy Technology Data Exchange (ETDEWEB)

    Porter, K.

    1996-09-01

    In April 1996, the Federal Regulatory Commission (PERC) approved Orders 888 and 889 and released a draft rule for public comment on capacity reservation tariffs (CRTs). Order No. 888 requires electric utilities to file transmission tariffs that would allow transmission access to third parties who want to conduct wholesale transactions, and Order No. 889 requires transmission-owning utilities to set up open access, same-time information systems (OASIS), using commercial software and Internet protocols. This paper discusses these Orders in detail, as well as some of the issues before FERC with implications for renewables, which include: transmission pricing; transmission terms and conditions; reassignment of transmission capacity; defining state and FERC jurisdiction over transmission and distribution; the pricing of ancillary services; and the adoption and implementation of independent system operators.

  9. Open access: a perspective from the humanities

    Directory of Open Access Journals (Sweden)

    Peter Mandler

    2014-07-01

    Full Text Available This article surveys the debates over UK public policy for open access (OA since 2012 from the perspective of scholars in the humanities. It isolates points in Research Council and REF policy that have come under criticism from the humanities community for their basis in science practice, and assesses the progress that has been made in addressing these concerns. Issues considered include ‘gold’ and ‘green’ models of OA, the role of university managers in determining where and what academics can publish, embargo periods and licensing. The author is President of the Royal Historical Society.

  10. Open Access Platforms in Spinal Cord Injury.

    Science.gov (United States)

    Kramer, John L K; Geisler, Fred; Ramer, Leanne; Plunet, Ward; Cragg, Jacquelyn J

    2017-01-01

    Recovery from acute spinal cord injury (SCI) is characterized by extensive heterogeneity, resulting in uncertain prognosis. Reliable prediction of recovery in the acute phase benefits patients and their families directly, as well as improves the likelihood of detecting efficacy in clinical trials. This issue of heterogeneity is not unique to SCI. In fields such as traumatic brain injury, Parkinson's disease, and amyotrophic lateral sclerosis, one approach to understand variability in recovery has been to make clinical trial data widely available to the greater research community. We contend that the SCI community should adopt a similar approach in providing open access clinical trial data.

  11. The history of open access medical publishing: a comprehensive review.

    Science.gov (United States)

    Sukhov, Andrea; Burrall, Barbara; Maverakis, Emanual

    2016-09-15

    Dermatology Online Journal became the first medical open access journal in the early 1990's. Today, thousands of open access medical journals are available on the Internet. Despite criticisms surrounding open access, these journals have allowed research to be rapidly available to the public. In addition, open access journal policies allow public health research to reach developing countries where this research has the potential to make a substantial impact. In the future, open access medical journals will likely continue to evolve with technology, changing how medical research is accessed and presented.

  12. Open Access Week 2011 in the Czech Republic (Report

    Directory of Open Access Journals (Sweden)

    Pavla Rygelová

    2012-04-01

    Full Text Available The awareness of open access is slowly rising in the Czech academic environment. Both green open access and gold open access have broken through thanks to Open Access Week, which has for the second time been organized by twelve Czech university libraries, the National Technical Library, and the Library of the Academy of Sciences of the Czech Republic, under the auspices of the Association of Libraries of Czech Universities.

  13. Database design for Physical Access Control System for nuclear facilities

    Energy Technology Data Exchange (ETDEWEB)

    Sathishkumar, T., E-mail: satishkumart@igcar.gov.in; Rao, G. Prabhakara, E-mail: prg@igcar.gov.in; Arumugam, P., E-mail: aarmu@igcar.gov.in

    2016-08-15

    Highlights: • Database design needs to be optimized and highly efficient for real time operation. • It requires a many-to-many mapping between Employee table and Doors table. • This mapping typically contain thousands of records and redundant data. • Proposed novel database design reduces the redundancy and provides abstraction. • This design is incorporated with the access control system developed in-house. - Abstract: A (Radio Frequency IDentification) RFID cum Biometric based two level Access Control System (ACS) was designed and developed for providing access to vital areas of nuclear facilities. The system has got both hardware [Access controller] and software components [server application, the database and the web client software]. The database design proposed, enables grouping of the employees based on the hierarchy of the organization and the grouping of the doors based on Access Zones (AZ). This design also illustrates the mapping between the Employee Groups (EG) and AZ. By following this approach in database design, a higher level view can be presented to the system administrator abstracting the inner details of the individual entities and doors. This paper describes the novel approach carried out in designing the database of the ACS.

  14. Is open access sufficient? A review of the quality of open-access nursing journals.

    Science.gov (United States)

    Crowe, Marie; Carlyle, Dave

    2015-02-01

    The present study aims to review the quality of open-access nursing journals listed in the Directory of Open Access Journals that published papers in 2013 with a nursing focus, written in English, and were freely accessible. Each journal was reviewed in relation to their publisher, year of commencement, number of papers published in 2013, fee for publication, indexing, impact factor, and evidence of requirements for ethics and disclosure statements. The quality of the journals was assessed by impact factors and the requirements for indexing in PubMed. A total of 552 were published in 2013 in the 19 open-access nursing journals that met the inclusion criteria. No journals had impact factors listed in Web of Knowledge, but three had low Scopus impact factors. Only five journals were indexed with PubMed. The quality of the 19 journals included in the review was evaluated as inferior to most subscription-fee journals. Mental health nursing has some responsibility to the general public, and in particular, consumers of mental health services and their families, for the quality of papers published in open-access journals. The way forward might involve dual-platform publication or a process that enables assessment of how research has improved clinical outcomes.

  15. Open access and knowledge sharing: reflections on the Pathfinder projects and Open Access Good Practice initiative

    Directory of Open Access Journals (Sweden)

    Hannah DeGroff

    2016-07-01

    Full Text Available The following article provides a selection of reflections from a number of higher education institutions and their staff about participation in the UK-wide Pathfinder project scheme. These nine projects (comprising 30 institutions form the core of the Jisc-funded Open Access Good Practice initiative. They have produced a wide range of outputs which endorse and encourage best practice when implementing open access across institutions. Each project has a blog where progress and outputs can be tracked. Details are listed at the end of this article.

  16. Types of Open Access Publishers in Scopus

    Directory of Open Access Journals (Sweden)

    David Solomon

    2013-05-01

    Full Text Available This study assessed characteristics of publishers who published 2010 open access (OA journals indexed in Scopus. Publishers were categorized into six types; professional, society, university, scholar/researcher, government, and other organizations. Type of publisher was broken down by number of journals/articles published in 2010, funding model, location, discipline and whether the journal was born or converted to OA. Universities and societies accounted for 50% of the journals and 43% of the articles published. Professional publisher accounted for a third of the journals and 42% of the articles. With the exception of professional and scholar/researcher publishers, most journals were originally subscription journals that made at least their digital version freely available. Arts, humanities and social science journals are largely published by societies and universities outside the major publishing countries. Professional OA publishing is most common in biomedicine, mathematics, the sciences and engineering. Approximately a quarter of the journals are hosted on national/international platforms, in Latin America, Eastern Europe and Asia largely published by universities and societies without the need for publishing fees. This type of collaboration between governments, universities and/or societies may be an effective means of expanding open access publications.

  17. 50 CFR 648.88 - Multispecies open access permit restrictions.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 8 2010-10-01 2010-10-01 false Multispecies open access permit... Management Measures for the NE Multispecies and Monkfish Fisheries § 648.88 Multispecies open access permit restrictions. (a) Handgear permit. A vessel issued a valid open access NE multispecies Handgear permit...

  18. 50 CFR 660.383 - Open access fishery management measures.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery management measures... West Coast Groundfish Fisheries § 660.383 Open access fishery management measures. (a) General. Groundfish species taken in open access fisheries will be managed with cumulative trip limits (see...

  19. Open access: the changing face of scientific publishing.

    Science.gov (United States)

    Chatterjee, Pranab; Biswas, Tamoghna; Mishra, Vishala

    2013-04-01

    The debate on open access to scientific literature that has been raging in scholarly circles for quite some time now has been fueled further by the recent developments in the realm of the open access movement. This article is a short commentary on the current scenario, challenges, and the future of the open access movement.

  20. Open Access and citation count: a CSIR case study

    CSIR Research Space (South Africa)

    Ramorulane, Dave

    2012-06-01

    Full Text Available Open Access (OA) refers to electronic scholarly articles, books, monographs and other grey literature that is freely available. Various electronic platforms limit access to their content due to subscription costs, firewalls, and other access...

  1. On the golden road : Open access publishing in particle physics

    CERN Document Server

    CERN. Geneva

    2007-01-01

    The particle physics community has over the last 15 years achieved so-called full green open access through the wide dissemination ofpreprints via arXiv, a central subject repository managed by Cornell University. However, green open access does not alleviate the economical difficulties of libraries as these still are expected to offer access to versions of record of the peer-reviewed literature. For this reason the particle physics community is now addressing the issue of gold open access by converting a set of the existing core journals to open access. A working party works now to bring together funding agencies, laboratories and libraries into a single consortium, called SCOAP3 (Sponsoring Consortium for Open access Publishing in Particle Physics). This consortium will engage with publishers towards building a sustainable model for open access publishing. In this model, subscription fees from multiple institutions are replaced with contracts with publishers of open access journals where the SCOAP3 consort...

  2. On the golden road Open access publishing in particle physics

    CERN Document Server

    CERN. Geneva; Yeomans, Joanne

    2007-01-01

    The particle physics community has over the last 15 years achieved so-called full green open access through the wide dissemination ofpreprints via arXiv, a central subject repository managed by Cornell University. However, green open access does not alleviate the economical difficulties of libraries as these still are expected to offer access to versions of record of the peer-reviewed literature. For this reason the particle physics community is now addressing the issue of gold open access by converting a set of the existing core journals to open access. A working party works now to bring together funding agencies, laboratories and libraries into a single consortium, called SCOAP3 (Sponsoring Consortium for Open access Publishing in Particle Physics). This consortium will engage with publishers towards building a sustainable model for open access publishing. In this model, subscription fees from multiple institutions are replaced with contracts with publishers of open access journals where the SCOAP3 consorti...

  3. Does open access in ophthalmology affect how articles are subsequently cited in research?

    Science.gov (United States)

    Lansingh, Van C; Carter, Marissa J

    2009-08-01

    To determine whether the concept of open access affects how articles are cited in the field of ophthalmology. Type of meta-analysis. Examination of 480 articles in ophthalmology in the experimental protocol and 415 articles in the control protocol. Four subject areas were chosen to search the ophthalmology literature in the PubMed database using the terms "cataract," "diabetic retinopathy," "glaucoma," and "refractive errors." Searching started in December of 2003 and worked back in time to the beginning of the year. The number of subsequent citations for equal numbers of both open access and closed access (by subscription) articles was quantified using the Scopus database and Google search engine. Number of authors, article type, country/region in which the article was published, language, and funding data were also collected for each article. A control protocol was also carried out to ascertain that the sampling method was not systematically biased by matching 6 ophthalmology journals (3 open access, 3 closed access) using their impact factors, and employing the same search methodology to sample open access and closed access articles. Number of citations. The total number of citations was significantly higher for open access articles compared to closed access articles for Scopus (mean 15.2 versus 11.5, P access was not a significant factor that explained the citation data. Author number, country/region of publication, subject area, language, and funding were the variables that had the most effect and were statistically significant. Control protocol results showed no significant difference between open and closed access articles in regard to number of citations found by Scopus: open access: mean = 17.8; SD (standard deviation) = 23.70; closed access: mean = 19.1; SD = 20.31; Mann-Whitney test, P = 0.730, Mann-Whitney U = 20584. Unlike other fields of science, open access thus far has not affected how ophthalmology articles are cited in the literature.

  4. Een groene kern met een gouden rand : Gronings Open Access beleid en de Open Accessweek 2010

    NARCIS (Netherlands)

    Hoorn, Esther; Huizing, Bernardus

    2011-01-01

    Open Access may increasingly encounter a warm interest and rejoice, and seems finally welcomed into the Dutch academia. NWO contributes to Open Access conviction. This is also evident from the statement of Jos Engelen (NWO chair) at the opening of a symposium in Open Access Week: "For science is Ope

  5. The open-access debate Rüdiger Voss extols the virtues of open access

    CERN Document Server

    Voss, Rüdiger

    2007-01-01

    "Publishers are under increasing pressure to make journal papers freee to all by abolishing subscriptions and making authors pay a fee instead. Rüdiger Voss welcomes the benefits that "open access" publishing brings, while John Enderby warns that this new publishing model comes at a price."

  6. A database in ACCESS for assessing vaccine serious adverse events

    Directory of Open Access Journals (Sweden)

    Thomas RE

    2015-04-01

    Full Text Available Roger E Thomas,1 Dave Jackson2,3 1Department of Family Medicine, G012 Health Sciences Centre, University of Calgary Medical School, Calgary, AB, Canada; 2Independent Research Consultant, Calgary, AB, Canada; 3Database Consultant, University of Calgary, Calgary, AB, Canada Purpose: To provide a free flexible database for use by any researcher for assessing reports of adverse events after vaccination. Results: A database was developed in Microsoft ACCESS to assess reports of serious adverse events after yellow fever vaccination using Brighton Collaboration criteria. The database is partly automated (if data panels contain identical data fields the data are automatically also entered into those fields. The purpose is to provide the database free for developers to add additional panels to assess other vaccines. Keywords: serious adverse events after vaccination, database, process to assess vaccine-associated events 

  7. Cuban Science and the Open Access Alternative

    CERN Document Server

    Arencibia Jorge, Ricardo; Torricella-Morales, Raúl G

    2004-01-01

    Science in Cuba has experienced extraordinary development since the triumph of the Cuban Revolution, in spite of the blockade to which Cuba has been subjected by the United States Government, and thanks to the support and cooperation of the countries that were part of the former Socialist Block. However, after the destruction of the Socialist Block, the Cuban economy suffered through a restructuring process that included the reorganization of the traditional systems for spreading scientific information. At that moment, it was necessary to use alternative means to effectively publicise, to the international scientific community, the information generated by Cuban scientists and scholars. This paper briefly reviews this new era, the institutions that led the process of change, and the future projections based on knowledge of the digital environment and the creation of electronic and open access information sources.

  8. Open-access, cogeneration and energy efficiency

    Energy Technology Data Exchange (ETDEWEB)

    Berta, J.M.

    1996-09-01

    The advantages and disadvantages of simultaneous implementation of cogeneration systems and energy efficient investments were presented, together with the factors which must be present before implementing a cogeneration system. Cogeneration has been shown to be a cost-effective investment, with significant environmental benefits such as reduction of carbon emissions. It was suggested that it would be a good opportunity for businesses which have sizeable heat energy requirements to combine the concept of cogeneration, energy efficiency and open access. The combination would allow the business to sell excess electrical energy to a power pool. When planning, the electricity generation capability should be large enough to meet the needs not only of the existing facility, but also current and future electricity needs. 10 refs.

  9. Is rational discussion of open access possible?

    Directory of Open Access Journals (Sweden)

    Rick Anderson

    2014-07-01

    Full Text Available Open Access (OA, like any other model or strategy for the dissemination of knowledge, carries with it clear benefits as well as costs and downsides. These vary depending on the OA strategy in question, and in order for OA to bring maximum benefit to the world of scholarship, its costs and benefits need be examined carefully and dispassionately so that the former can be maximized and the latter minimized. Unfortunately, the OA advocacy community tends to resist all attempts to examine OA in this way, to the point that those who approach OA in a spirit of critical analysis (rather than celebration and evangelism are attacked and punished. This article describes the problem, provides examples of it, and proposes strategies for promoting a more rigorous and analytical discussion of OA.

  10. Open Access and the Developing World

    Institute of Scientific and Technical Information of China (English)

    Subbiah Arunachalam

    2006-01-01

    Till about 15 years ago, almost all information exchange among scientists and scholars was mediated by print and even then researchers in the developing countries were at a great disadvantage as their libraries did not have the resources to subscribe in comparison with even a small fraction of journals libraries in advanced countries. But the Internet and the Word Wide Web initially exacerbated the gap between the rich and the poor countries, as many poor countries were slow to acquire these technologies and the infrastructure (especially bandwidth). Soon it became clear that thanks to these technologies we now have the unprecedented opportunity of having a level playing field in the matter of accessing scientific and scholarly information. Transforming this opportunity into reality is entirely in the hands of the researchers themselves. Imagine a word where every scientist places his/her research papers, which (s)he wants to give away so others can read and make use of, in a public archive. Anyone anywhere in the world, of course having an Internet connection, can access, download, and read those papers. This is a win-win situation for all: the reader gets to read what he wants to read at very little cost; the author gains greater visibility for his work and the work reported is likely to have greater impact than if it were to be made available only through a toll-access journal. Although the logic is so simple, in reality such archives were not coming up for a very long time. In spite of the fact that computer scientists and physicists had shown about 15 years ago the great advantages of such archives. Recent studies by Alma Swan and others have shown that a very large proportion of scientists are not aware of open access and therefore what we need is focused advocacy. Even among those who know of OA, many are not depositing their papers in archives but say they would if they are asked by their bosses or their funding agencies. Clearly the ball is in the court of

  11. The AAS Working Group on Accessibility and Disability (WGAD) Year 1 Highlights and Database Access

    Science.gov (United States)

    Knierman, Karen A.; Diaz Merced, Wanda; Aarnio, Alicia; Garcia, Beatriz; Monkiewicz, Jacqueline A.; Murphy, Nicholas Arnold

    2017-06-01

    The AAS Working Group on Accessibility and Disability (WGAD) was formed in January of 2016 with the express purpose of seeking equity of opportunity and building inclusive practices for disabled astronomers at all educational and career stages. In this presentation, we will provide a summary of current activities, focusing on developing best practices for accessibility with respect to astronomical databases, publications, and meetings. Due to the reliance of space sciences on databases, it is important to have user centered design systems for data retrieval. The cognitive overload that may be experienced by users of current databases may be mitigated by use of multi-modal interfaces such as xSonify. Such interfaces would be in parallel or outside the original database and would not require additional software efforts from the original database. WGAD is partnering with the IAU Commission C1 WG Astronomy for Equity and Inclusion to develop such accessibility tools for databases and methods for user testing. To collect data on astronomical conference and meeting accessibility considerations, WGAD solicited feedback from January AAS attendees via a web form. These data, together with upcoming input from the community and analysis of accessibility documents of similar conferences, will be used to create a meeting accessibility document. Additionally, we will update the progress of journal access guidelines and our social media presence via Twitter. We recommend that astronomical journals form committees to evaluate the accessibility of their publications by performing user-centered usability studies.

  12. Editorial: Science Popularization through Open Access

    Directory of Open Access Journals (Sweden)

    Alireza Noruzi

    2008-03-01

    Full Text Available The science plays a crucial role in the modern society, and the popularization of science in its electronic form is closely related to the rise and development of the World Wide Web. Since 1990s -the introduction of the Web as a part of the Internet- the science popularization has become more and more involved in the web-based society. Therefore, the Web has become an important technical support of the science popularization. The Web, on the one hand, has increased the accessibility, visibility and popularity of science and scientific research. On the other hand, the increased accessibility and visibility has also increased the citations and research impact or educational impact received by a popular journal or a paper. Science popularization has now made an important step forward, because the Web contributes today as an effective means of improving the public understanding of science. The Web has made it possible to popularize the science via popular search engines. The Web creates a link between specialists and the public; in short, between science and common sense, just by a hyperlink. The science popularization is an attempt to reduce the distance standing between science specialists and the public. Science popularization is interpretation of scientific information (science intended for a general audience, rather than for other experts or students. Science popularization via the Web is a programme that takes science to web users with an objective of making them aware of the efforts, achievements and advances of science. Such programmes could include e-books, e-conferences, e-newspapers, online journalism, online workshops, seminars, and meetings, electronic forums, open-access journals, audio-visiual material, etc.

  13. Access control mechanism of wireless gateway based on open flow

    Science.gov (United States)

    Peng, Rong; Ding, Lei

    2017-08-01

    In order to realize the access control of wireless gateway and improve the access control of wireless gateway devices, an access control mechanism of SDN architecture which is based on Open vSwitch is proposed. The mechanism utilizes the features of the controller--centralized control and programmable. Controller send access control flow table based on the business logic. Open vSwitch helps achieve a specific access control strategy based on the flow table.

  14. The Open Library at AU (Athabasca University: Supporting Open Access and Open Educational Resources

    Directory of Open Access Journals (Sweden)

    Colin Elliott

    2015-04-01

    Full Text Available To address challenges that learners, course creators, librarians and academics involved with OER and MOOCs are facing when looking for scholarly materials, Athabasca University Library has initiated the development of the Open Library at AU. This open library is a full library website that provides easy access to open and free resources. Tools and information literacy tutorials are also included to enable learners, researchers, and others to find, evaluate, and use the information they need for their open learning course or research. Many of the challenges that those involved in open learning face are addressed by the open library and the potential impact it can have on open learning and knowledge sharing is tremendous. http://dx.doi.org/10.5944/openpraxis.7.2.196

  15. Issues in the development of open access to research data

    NARCIS (Netherlands)

    Wessels, Bridgette; Finn, Rachel L.; Linde, Peter; Mazzetti, Paolo; Nativi, Stefano; Riley, Susan; Smallwood, Rod; Taylor, Mark J.; Tsoukala, Victoria; Wadhwa, Kush; Wyatt, S.

    2014-01-01

    This paper explores key issues in the development of open access to research data. The use of digital means for developing, storing and manipulating data is creating a focus on ‘data-driven science’. One aspect of this focus is the development of ‘open access’ to research data. Open access to resear

  16. Issues in the development of open access to research data

    NARCIS (Netherlands)

    Wessels, Bridgette; Finn, Rachel L.; Linde, Peter; Mazzetti, Paolo; Nativi, Stefano; Riley, Susan; Smallwood, Rod; Taylor, Mark J.; Tsoukala, Victoria; Wadhwa, Kush; Wyatt, S.

    2014-01-01

    This paper explores key issues in the development of open access to research data. The use of digital means for developing, storing and manipulating data is creating a focus on ‘data-driven science’. One aspect of this focus is the development of ‘open access’ to research data. Open access to resear

  17. Open Access Publishing in the Electronic Age.

    Science.gov (United States)

    Kovács, Gábor L

    2014-10-01

    The principle of open-access (OA) publishing is more and more prevalent also on the field of laboratory medicine. Open-access journals (OAJs) are available online to the reader usually without financial, legal, or technical barriers. Some are subsidized, and some require payment on behalf of the author. OAJs are one of the two general methods for providing OA. The other one is self-archiving in a repository. The electronic journal of the IFCC (eJIFCC) is a platinum OAJ- i.e. there is no charge to read, or to submit to this journal. Traditionally, the author was required to transfer the copyright to the journal publisher. Publishers claimed this was necessary in order to protect author's rights. However, many authors found this unsatisfactory, and have used their influence to affect a gradual move towards a license to publish instead. Under such a system, the publisher has permission to edit, print, and distribute the article commercially, but the author(s) retain the other rights themselves. An OA mandate is a policy adopted by a research institution, research funder, or government which requires researchers to make their published, peer-reviewed journal articles and conference papers OA by self-archiving their peer-reviewed drafts in a repository ("green OA") or by publishing them in an OAJ ("gold OA"). Creative Commons (CC) is a nonprofit organization that enables the sharing and use of creativity and knowledge through free legal tools. The free, easy-to-use copyright licenses provide a simple, standardized way to give the public permission to share and use creative work. CC licenses let you easily change your copyright terms from the default of "all rights reserved" to "some rights reserved." OA publishing also raises a number of new ethical problems (e.g. predatory publishers, fake papers). Laboratory scientists are encouraged to publish their scientific results OA (especially in eJIFCC). They should, however, be aware of their rights, institutional mandate

  18. High-Performance Secure Database Access Technologies for HEP Grids

    Energy Technology Data Exchange (ETDEWEB)

    Matthew Vranicar; John Weicher

    2006-04-17

    The Large Hadron Collider (LHC) at the CERN Laboratory will become the largest scientific instrument in the world when it starts operations in 2007. Large Scale Analysis Computer Systems (computational grids) are required to extract rare signals of new physics from petabytes of LHC detector data. In addition to file-based event data, LHC data processing applications require access to large amounts of data in relational databases: detector conditions, calibrations, etc. U.S. high energy physicists demand efficient performance of grid computing applications in LHC physics research where world-wide remote participation is vital to their success. To empower physicists with data-intensive analysis capabilities a whole hyperinfrastructure of distributed databases cross-cuts a multi-tier hierarchy of computational grids. The crosscutting allows separation of concerns across both the global environment of a federation of computational grids and the local environment of a physicist’s computer used for analysis. Very few efforts are on-going in the area of database and grid integration research. Most of these are outside of the U.S. and rely on traditional approaches to secure database access via an extraneous security layer separate from the database system core, preventing efficient data transfers. Our findings are shared by the Database Access and Integration Services Working Group of the Global Grid Forum, who states that "Research and development activities relating to the Grid have generally focused on applications where data is stored in files. However, in many scientific and commercial domains, database management systems have a central role in data storage, access, organization, authorization, etc, for numerous applications.” There is a clear opportunity for a technological breakthrough, requiring innovative steps to provide high-performance secure database access technologies for grid computing. We believe that an innovative database architecture where the

  19. Creating user-friendly databases with Microsoft Access.

    Science.gov (United States)

    Schneider, Joanne Kraenzle; Schneider, Joseph F; Lorenz, Rebecca A

    2005-01-01

    Data entry can be tedious and is fraught with potential for errors that affect study findings. Researchers can minimise entry errors and streamline data entry by using some of the popular software packages on the market. Joanne Kraenzle Schneider and colleagues describe one way to create a user-friendly database that minimises entry errors by using Microsoft (MS) Access.

  20. User walkthrough of multimodal access to multidimensional databases

    NARCIS (Netherlands)

    Esch van-Bussemakers, M.P.; Cremers, A.H.M.

    2004-01-01

    This paper describes a user walkthrough that was conducted with an experimental multimodal dialogue system to access a multidimensional music database using a simulated mobile device (including a technically challenging four-PHANToM-setup). The main objectives of the user walkthrough were to assess

  1. Optimizing Database Architecture for the New Bottleneck: Memory Access

    NARCIS (Netherlands)

    S. Manegold (Stefan); P.A. Boncz (Peter); M.L. Kersten (Martin)

    2000-01-01

    textabstractIn the past decade, advances in speed of commodity CPUs have far out-paced advances in memory latency. Main-memory access is therefore increasingly a performance bottleneck for many computer applications, including database systems. In this article, we use a simple scan test to show the

  2. Open Access Mandates and the "Fair Dealing" Button

    CERN Document Server

    Sale, Arthur; Rodrigues, Eloy; Carr, Leslie; Harnad, Stevan

    2010-01-01

    We describe the "Fair Dealing Button," a feature designed for authors who have deposited their papers in an Open Access Institutional Repository but have deposited them as "Closed Access" (meaning only the metadata are visible and retrievable, not the full eprint) rather than Open Access. The Button allows individual users to request and authors to provide a single eprint via semi-automated email. The purpose of the Button is to tide over research usage needs during any publisher embargo on Open Access and, more importantly, to make it possible for institutions to adopt the "Immediate-Deposit/Optional-Access" Mandate, without exceptions or opt-outs, instead of a mandate that allows delayed deposit or deposit waivers, depending on publisher permissions or embargoes (or no mandate at all). This is only "Almost-Open Access," but in facilitating exception-free immediate-deposit mandates it will accelerate the advent of universal Open Access.

  3. Paid Open Access: A Comparative Study of Selected International Publishers

    Directory of Open Access Journals (Sweden)

    DIMPLE SHARMA

    2012-01-01

    Full Text Available Open Access as emerged as a global movement in the academic sphere providing freeonline access to scholarly literature. Generally author submits a manuscript to the open access journals and after the peer-reviewing and editorial process is over the article is published for free access and download. Some publishers have developed a model in which either the author(s or their parent organization has to pay the open access fee or article processing charges. This paper aims to provide an insight of selected international publishers who have adopted paid open access model. In the data analysis section the facts have been presented in tables and charts focusing on various aspects of paid open access. At the end of the paper some practical recommendations have been made for sustaining and removing the shortcomings of this model.

  4. Positioning Your Library in an Open-Access Environment

    Science.gov (United States)

    Bhatt, Anjana H.

    2010-01-01

    This paper is a summary of the project that the author completed at Florida Gulf Coast University (FGCU) library for providing online access to 80 open access E-journals and digital collections. Although FGCU uses SerialsSolutions products to establish online access, any one can provide access to these collections as they are free for all. Paper…

  5. Positioning Your Library in an Open-Access Environment

    Science.gov (United States)

    Bhatt, Anjana H.

    2010-01-01

    This paper is a summary of the project that the author completed at Florida Gulf Coast University (FGCU) library for providing online access to 80 open access E-journals and digital collections. Although FGCU uses SerialsSolutions products to establish online access, any one can provide access to these collections as they are free for all. Paper…

  6. "Open Access" Requires Clarification: Medical Journal Publication Models Evolve.

    Science.gov (United States)

    Lubowitz, James H; Brand, Jefferson C; Rossi, Michael J; Provencher, Matthew T

    2017-03-01

    While Arthroscopy journal is a traditional subscription model journal, our companion journal Arthroscopy Techniques is "open access." We used to believe open access simply meant online and free of charge. However, while open-access journals are free to readers, in 2017 authors must make a greater sacrifice in the form of an article-processing charge (APC). Again, while this does not apply to Arthroscopy, the APC will apply to Arthroscopy Techniques.

  7. 2005, the year CERN ran for Open Access

    CERN Document Server

    Gentil-Beccot, Anne

    2006-01-01

    CERN has always actively supported the principles of Open Access, for example in its convention, by the creation of its document repository, and by signing the Berlin Declaration in 2003. But in 2005 the activity increased significantly. Signature of a new publication policy has taken place, creation of a dedicated website, financial support has been given to an open access journal, and some major events promoting Open Access have been organised... All these milestones are described in this article.

  8. SUBJECTIVE CONTENT ACCESSIBILITY USING DATABASE APPROACH FOR DIGITAL LIBRARY

    Directory of Open Access Journals (Sweden)

    Sachin yele

    2011-03-01

    Full Text Available Today’s digital library is a massive collection of various types and categories of documents. The existing search engines do not provide subjective search from the collection, as no information about context is stored. The existing search engine mostly uses the agent based search then the database based search. The database search is simpler easier but static verses dynamic Web. The work shows how database become dynamic, subjective and search query becomes simpler. The subjective and context based search is necessity of searchingin Digital Library. The user who may be researcher, students, and even common person expect subject or context and need content accessibility precise and subject specific. This paper presents the topic-word specific subjective search using the database approach in digital library, by data mining technique in warehouse.

  9. Open versus Controlled-Access Data | Office of Cancer Genomics

    Science.gov (United States)

    OCG employs stringent human subjects’ protection and data access policies to protect the privacy and confidentiality of the research participants. Depending on the risk of patient identification, OCG programs data are available to the scientific community in two tiers: open or controlled access. Both types of data can be accessed through its corresponding OCG program-specific data matrix or portal. Open-access Data

  10. Overview and perspectives for Open Access development in Argentina

    Directory of Open Access Journals (Sweden)

    Sandra Miguel

    2013-04-01

    Full Text Available This paper provides an overview and perspectives for development of the Open Access movement in Argentina, within the global and regional (Latin American context. It outlines the evolution and current state of initiatives around the two main approaches to Open Access, the golden and green roads. The main Open Access policies and support of OA movement by governments in Latin American region, and particularly in Argentina, are highlighted, while recent studies on publishing practices and authors’ positions regarding Open Access are presented. The paper concludes that the prospects for development of OA in Argentina, both through golden and green roads are favorable, with their strengths and shortcomings

  11. Citation advantage of open access articles.

    Directory of Open Access Journals (Sweden)

    Gunther Eysenbach

    2006-05-01

    Full Text Available Open access (OA to the research literature has the potential to accelerate recognition and dissemination of research findings, but its actual effects are controversial. This was a longitudinal bibliometric analysis of a cohort of OA and non-OA articles published between June 8, 2004, and December 20, 2004, in the same journal (PNAS: Proceedings of the National Academy of Sciences. Article characteristics were extracted, and citation data were compared between the two groups at three different points in time: at "quasi-baseline" (December 2004, 0-6 mo after publication, in April 2005 (4-10 mo after publication, and in October 2005 (10-16 mo after publication. Potentially confounding variables, including number of authors, authors' lifetime publication count and impact, submission track, country of corresponding author, funding organization, and discipline, were adjusted for in logistic and linear multiple regression models. A total of 1,492 original research articles were analyzed: 212 (14.2% of all articles were OA articles paid by the author, and 1,280 (85.8% were non-OA articles. In April 2005 (mean 206 d after publication, 627 (49.0% of the non-OA articles versus 78 (36.8% of the OA articles were not cited (relative risk = 1.3 [95% Confidence Interval: 1.1-1.6]; p = 0.001. 6 mo later (mean 288 d after publication, non-OA articles were still more likely to be uncited (non-OA: 172 [13.6%], OA: 11 [5.2%]; relative risk = 2.6 [1.4-4.7]; p < 0.001. The average number of citations of OA articles was higher compared to non-OA articles (April 2005: 1.5 [SD = 2.5] versus 1.2 [SD = 2.0]; Z = 3.123; p = 0.002; October 2005: 6.4 [SD = 10.4] versus 4.5 [SD = 4.9]; Z = 4.058; p < 0.001. In a logistic regression model, controlling for potential confounders, OA articles compared to non-OA articles remained twice as likely to be cited (odds ratio = 2.1 [1.5-2.9] in the first 4-10 mo after publication (April 2005, with the odds ratio increasing to 2.9 (1

  12. Database access and problem solving in the basic sciences.

    Science.gov (United States)

    de Bliek, R; Friedman, C P; Wildemuth, B M; Martz, J M; File, D; Twarog, R G; Reich, G M; Hoekstra, L

    1993-01-01

    This study examined the potential contribution that access to a database of biomedical information may offer in support of problem-solving exercises when personal knowledge is inadequate. Thirty-six medical students were assessed over four occasions and three domains in the basic sciences: bacteriology, pharmacology, and toxicology. Each assessment consisted of a two-pass protocol in which students were first assessed for their personal knowledge of a domain with a short-answer problem set. Then, for a sample of problems they had missed, they were asked to use a database, INQUIRER, to respond to questions which they had been unable to address with their personal knowledge. Results indicate that for a domain in which the database is well-integrated in course activities, useful retrieval of information which augmented personal knowledge increased over three assessment occasions, even continuing to increase several months after course exposure and experience with the database. For all domains, even at assessments prior to course exposure, students were able to moderately extend their ability to solve problems through access to the INQUIRER database.

  13. Open Access Scholarly Publications as OER

    Science.gov (United States)

    Anderson, Terry

    2013-01-01

    This paper presents the rationale, common practices, challenges, and some personal anecdotes from a journal editor on the production, use, and re-use of peer-reviewed scholarly articles as open educational resources (OER). The scholarly and professional discourse related to open educational resources has largely focused on open learning objects,…

  14. Usage Trends of Open Access and Local Journals: A Korean Case Study.

    Science.gov (United States)

    Seo, Jeong-Wook; Chung, Hosik; Yun, Jungmin; Park, Jin Young; Park, Eunsun; Ahn, Yuri

    2016-01-01

    Articles from open access and local journals are important resources for research in Korea and the usage trends of these articles are important indicators for the assessment of the current research practice. We analyzed an institutional collection of published papers from 1998 to 2014 authored by researchers from Seoul National University, and their references from papers published between 1998 and 2011. The published papers were collected from Web of Science or Scopus and were analyzed according to the proportion of articles from open access journals. Their cited references from published papers in Web of Science were analyzed according to the proportion of local (South Korean) or open access journals. The proportion of open access papers was relatively stable until 2006 (2.5 ~ 5.2% in Web of Science and 2.7 ~ 4.2% in Scopus), but then increased to 15.9% (Web of Science) or 18.5% (Scopus) in 2014. We analyzed 2,750,485 cited references from 52,295 published papers. We found that the overall proportion of cited articles from local journals was 1.8% and that for open access journals was 3.0%. Citations of open access articles have increased since 2006 to 4.1% in 2011, although the increase in open access article citations was less than for open access publications. The proportion of citations from local journals was even lower. We think that the publishing / citing mismatch is a term to describe this difference, which is an issue at Seoul National University, where the number of published papers at open access or local journals is increasing but the number of citations is not. The cause of this discrepancy is multi-factorial but the governmental / institutional policies, social / cultural issues and authors' citing behaviors will explain the mismatch. However, additional measures are also necessary, such as the development of an institutional citation database and improved search capabilities with respect to local and open access documents.

  15. Usage Trends of Open Access and Local Journals: A Korean Case Study.

    Directory of Open Access Journals (Sweden)

    Jeong-Wook Seo

    Full Text Available Articles from open access and local journals are important resources for research in Korea and the usage trends of these articles are important indicators for the assessment of the current research practice. We analyzed an institutional collection of published papers from 1998 to 2014 authored by researchers from Seoul National University, and their references from papers published between 1998 and 2011. The published papers were collected from Web of Science or Scopus and were analyzed according to the proportion of articles from open access journals. Their cited references from published papers in Web of Science were analyzed according to the proportion of local (South Korean or open access journals. The proportion of open access papers was relatively stable until 2006 (2.5 ~ 5.2% in Web of Science and 2.7 ~ 4.2% in Scopus, but then increased to 15.9% (Web of Science or 18.5% (Scopus in 2014. We analyzed 2,750,485 cited references from 52,295 published papers. We found that the overall proportion of cited articles from local journals was 1.8% and that for open access journals was 3.0%. Citations of open access articles have increased since 2006 to 4.1% in 2011, although the increase in open access article citations was less than for open access publications. The proportion of citations from local journals was even lower. We think that the publishing / citing mismatch is a term to describe this difference, which is an issue at Seoul National University, where the number of published papers at open access or local journals is increasing but the number of citations is not. The cause of this discrepancy is multi-factorial but the governmental / institutional policies, social / cultural issues and authors' citing behaviors will explain the mismatch. However, additional measures are also necessary, such as the development of an institutional citation database and improved search capabilities with respect to local and open access documents.

  16. The Open Access Availability of Library and Information Science Literature

    Science.gov (United States)

    Way, Doug

    2010-01-01

    To examine the open access availability of Library and Information Science (LIS) research, a study was conducted using Google Scholar to search for articles from 20 top LIS journals. The study examined whether Google Scholar was able to find any links to full text, if open access versions of the articles were available and where these articles…

  17. APS extends open access to all its journals

    CERN Multimedia

    Thomas, Kim

    2006-01-01

    "Physics research promoter and publisher the American Physical Society (APS) is to extend open access to all its journals. Th APS previously made its five print journals available through subscriptions, and its two e-journals (Physical Review Special Topics and Physics Educatoin Research) on an open access basis." (1/2 page)

  18. Frame of Reference: Open Access Starts with You

    Science.gov (United States)

    Goetsch, Lori A.

    2010-01-01

    Federal legislation now requires the deposit of some taxpayer-funded research in "open-access" repositories--that is, sites where scholarship and research are made freely available over the Internet. The institutions whose faculty produce the research have begun to see the benefit of open-access publication as well. From the perspective of faculty…

  19. Empowering Learners with Mobile Open-Access Learning Initiatives

    Science.gov (United States)

    Mills, Michael, Ed.; Wake, Donna, Ed.

    2017-01-01

    Education has been progressing at a rapid pace ever since educators have been able to harness the power of mobile technology. Open-access learning techniques provide more students with the opportunity to engage in educational opportunities that may have been previously restricted. "Empowering Learners with Mobile Open-Access Learning…

  20. Prospect for Development of Open Access in Argentina

    Science.gov (United States)

    Miguel, Sandra; Bongiovani, Paola C.; Gomez, Nancy D.; Bueno-de-la-Fuente, Gema

    2013-01-01

    This perspective article presents an overview of the Open Access movement in Argentina, from a global and regional (Latin American) context. The article describes the evolution and current state of initiatives by examining two principal approaches to Open Access in Argentina: "golden" and "green roads". The article will then…

  1. The Open Access Availability of Library and Information Science Literature

    Science.gov (United States)

    Way, Doug

    2010-01-01

    To examine the open access availability of Library and Information Science (LIS) research, a study was conducted using Google Scholar to search for articles from 20 top LIS journals. The study examined whether Google Scholar was able to find any links to full text, if open access versions of the articles were available and where these articles…

  2. The Impact Factor: Implications of Open Access on Quality

    Science.gov (United States)

    Grozanick, Sara E.

    2010-01-01

    There has been debate about the extent to which open access affects the quality of scholarly work. At the same time, researchers have begun to look for ways to evaluate the quality of open access publications. Dating back to the growth of citation indexes during the 1960s and 1970s, citation analysis--examining citation statistics--has since been…

  3. Germany: US open access - is it a model for Europe

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1991-02-01

    A report commissioned by Ruhrgas on the US open access gas pipeline transportation is discussed, and the finding that a large number of problems still remain unresolved in the US gas industry is outlined. The conclusion that the EC would be ill advised to pursue US open access gas transportation policies as a model for Europe is considered. (U.K.).

  4. Prospect for Development of Open Access in Argentina

    Science.gov (United States)

    Miguel, Sandra; Bongiovani, Paola C.; Gomez, Nancy D.; Bueno-de-la-Fuente, Gema

    2013-01-01

    This perspective article presents an overview of the Open Access movement in Argentina, from a global and regional (Latin American) context. The article describes the evolution and current state of initiatives by examining two principal approaches to Open Access in Argentina: "golden" and "green roads". The article will then…

  5. The Impact Factor: Implications of Open Access on Quality

    Science.gov (United States)

    Grozanick, Sara E.

    2010-01-01

    There has been debate about the extent to which open access affects the quality of scholarly work. At the same time, researchers have begun to look for ways to evaluate the quality of open access publications. Dating back to the growth of citation indexes during the 1960s and 1970s, citation analysis--examining citation statistics--has since been…

  6. Frame of Reference: Open Access Starts with You

    Science.gov (United States)

    Goetsch, Lori A.

    2010-01-01

    Federal legislation now requires the deposit of some taxpayer-funded research in "open-access" repositories--that is, sites where scholarship and research are made freely available over the Internet. The institutions whose faculty produce the research have begun to see the benefit of open-access publication as well. From the perspective of faculty…

  7. Open Access Publishing in Indian Premier Research Institutions

    Science.gov (United States)

    Bhat, Mohammad Hanief

    2009-01-01

    Introduction: Publishing research findings in open access journals is a means of enhancing visibility and consequently increasing the impact of publications. This study provides an overview of open access publishing in premier research institutes of India. Method: The publication output of each institution from 2003 to 2007 was ascertained through…

  8. Stort potentiale for Open Access i professionshøjskolerne

    DEFF Research Database (Denmark)

    Greve, Charlotte; Larsen, Birgit

    2013-01-01

    En ny kortlægning af mulighederne for Open Access til artikler publiceret af professionshøjskolernes medarbejdere i danske og nordiske tidsskrifter viser, at der kan opnås fuldtekstadgang til over 75 % af artiklerne. Cirka halvdelen af tidsskrifterne tillader imidlertid ikke Open Access eller...

  9. Open Access Policy Guidelines and Template for Funders

    OpenAIRE

    Tsoukala, Victoria; Angelaki, Marina

    2015-01-01

    The present guidelines aim to assist in the development of efficient Open Access policies among Funders.  They provide the context, the process and a model policy (template) that will enable Funders to develop and implement their own Open Access policy. 

  10. The role of CRIS systems in measuring Open Access publications

    NARCIS (Netherlands)

    Scharnhorst, A.M.; Dijk, E.M.S.; Doorn, P.K.; van Berchum, M.

    2016-01-01

    Open Access to scientific results - from publications to data - is high on the agenda of science policy drivers. Since long there is no doubt that making your own research available on the web is the best way to gain visibility and impact (Lawrence 2001). The Open Access movement started with calls

  11. Grøn Open Access i Praksis

    DEFF Research Database (Denmark)

    Open Access indikatoren påviste et uudnyttet potentiale på ca 60%, men hvorfor er der så ikke mere Open Access indhold?. I det konkrete arbejde med forskningsregistrering og registrering af post-prints støder bibliotekerne på en række udfordringer, som vanskeliggør institutionernes muligheder...... for at nå de nationale Open Access mål. Det er for eksempel inden for områderne rettigheder og licenser, tilladte Open Access versioner, embargoperioder m.m., at vi støder på problemer. Det er disse meget konkrete udfordringer, der arbejdes med i det kommende DEFF projekt ”Grøn Open Access i praksis”....

  12. Web browser accessibility using open source software

    NARCIS (Netherlands)

    Obrenovic, Z.; Ossenbruggen, J.R. van

    2007-01-01

    A Web browser provides a uniform user interface to different types of information. Making this interface universally accessible and more interactive is a long term goal still far from being achieved. Universally accessible browsers require novel interaction modalities and additional functionalities,

  13. Open Access to Mexican Academic Production

    Science.gov (United States)

    Adame, Silvia I.; Llorens, Luis

    2016-01-01

    This paper presents a description of the metadata harvester software development. This system provides access to reliable and quality educational resources, shared by Mexican Universities through their repositories, to anyone with Internet Access. We present the conceptual and contextual framework, followed by the technical basis, the results and…

  14. Open Access Publishing in the Field of Medical Informatics.

    Science.gov (United States)

    Kuballa, Stefanie

    2017-05-01

    The open access paradigm has become an important approach in today's information and communication society. Funders and governments in different countries stipulate open access publications of funded research results. Medical informatics as part of the science, technology and medicine disciplines benefits from many research funds, such as National Institutes of Health in the US, Wellcome Trust in UK, German Research Foundation in Germany and many more. In this study an overview of the current open access programs and conditions of major journals in the field of medical informatics is presented. It was investigated whether there are suitable options and how they are shaped. Therefore all journals in Thomson Reuters Web of Science that were listed in the subject category "Medical Informatics" in 2014 were examined. An Internet research was conducted by investigating the journals' websites. It was reviewed whether journals offer an open access option with a subsequent check of conditions as for example the type of open access, the fees and the licensing. As a result all journals in the field of medical informatics that had an impact factor in 2014 offer an open access option. A predominantly consistent pricing range was determined with an average fee of 2.248 € and a median fee of 2.207 €. The height of a journals' open access fee did not correlate with the height of its Impact Factor. Hence, medical informatics journals have recognized the trend of open access publishing, though the vast majority of them are working with the hybrid method. Hybrid open access may however lead to problems in questions of double dipping and the often stipulated gold open access.

  15. Legal research when relying on open access: a primer

    NARCIS (Netherlands)

    van Dijck, Gijs

    2016-01-01

    With more and more information disclosed online and with open-access policies on the rise, legal academic research is becoming more accessible. The potential impact of this development is enormous, particularly in areas or jurisdictions where offline information is scarce and where access to subscri

  16. Legal research when relying on open access : A primer

    NARCIS (Netherlands)

    van Dijck, Gijs

    2016-01-01

    With more and more information disclosed online and with open-access policies on the rise, legal academic research is becoming more accessible. The potential impact of this development is enormous, particularly in areas or jurisdictions where offline information is scarce and where access to subscri

  17. Auditing the Accessibility of Massive Open Online Courses (MOOCs).

    Science.gov (United States)

    Iniesto, Francisco; McAndrew, Patrick; Minocha, Shailey; Coughlan, Tim

    2017-01-01

    The outcome from the research being reported in this paper is the design of an accessibility audit to evaluate Massive Open Online Courses (MOOCs) for accessibility and to arrive at solutions and adaptations that can meet user needs. This accessibility audit includes expert-based heuristic evaluations and user-based evaluations of the MOOC platforms and individual courses.

  18. Open vs Closed Access Femtocells in the Uplink

    CERN Document Server

    Xia, Ping; Andrews, Jeffrey G

    2010-01-01

    Femtocells are assuming an increasingly important role in the coverage and capacity of cellular networks. In contrast to existing cellular systems, femtocells are end-user deployed and controlled, randomly located, and rely on third party backhaul (e.g. DSL or cable modem). Femtocells can be configured to be either open access or closed access. Open access allows an arbitrary nearby cellular user to use the femtocell, whereas closed access restricts the use of the femtocell to users explicitly approved by the owner. Seemingly, the network operator would prefer an open access deployment since this provides an inexpensive way to expand their network capabilities, whereas the femtocell owner would prefer closed access, in order to keep the femtocell's capacity and backhaul to himself. We show mathematically and through simulations that the reality is more complicated for both parties, and that the best approach depends heavily on whether the multiple access scheme is orthogonal (TDMA or OFDMA, per subband) or no...

  19. A Personal Note on Open Access in Linguistics

    Directory of Open Access Journals (Sweden)

    Stefan Müller

    2012-12-01

    Full Text Available This paper contains only known facts about open access, but they are put into a rather personal perspective that may help others to understand the importance of Open Access in science in general and in linguistics in particular.This paper tries to motivate Open Access publishing, with a particular focus on publishing books. In Section 1, I describe the problems in accessing relevant information in economically weak countries, the problem of underpayment in the humanities, and usage restrictions of traditionally published books. Section 2 explains the factors that contribute to book prices. Section 3 briefly describes Open Access publishing and print on demand services. In Section 4, I address some challenges for Open Access publishing and suggest ways to ensure quality control, proper typesetting, and efficient marketing. Section 5 discusses Open Access approaches of profitorientated publishers. Section 6 deals with Open Access and getting tenure and promotion, and Section 7 is about radical opinions about copyrights outside of academia. Version of 7th January 2012 (minor editorial changes.

  20. Resolving the problem of multiple accessions of the same transcript deposited across various public databases.

    Science.gov (United States)

    Weirick, Tyler; John, David; Uchida, Shizuka

    2017-03-01

    Maintaining the consistency of genomic annotations is an increasingly complex task because of the iterative and dynamic nature of assembly and annotation, growing numbers of biological databases and insufficient integration of annotations across databases. As information exchange among databases is poor, a 'novel' sequence from one reference annotation could be annotated in another. Furthermore, relationships to nearby or overlapping annotated transcripts are even more complicated when using different genome assemblies. To better understand these problems, we surveyed current and previous versions of genomic assemblies and annotations across a number of public databases containing long noncoding RNA. We identified numerous discrepancies of transcripts regarding their genomic locations, transcript lengths and identifiers. Further investigation showed that the positional differences between reference annotations of essentially the same transcript could lead to differences in its measured expression at the RNA level. To aid in resolving these problems, we present the algorithm 'Universal Genomic Accession Hash (UGAHash)' and created an open source web tool to encourage the usage of the UGAHash algorithm. The UGAHash web tool (http://ugahash.uni-frankfurt.de) can be accessed freely without registration. The web tool allows researchers to generate Universal Genomic Accessions for genomic features or to explore annotations deposited in the public databases of the past and present versions. We anticipate that the UGAHash web tool will be a valuable tool to check for the existence of transcripts before judging the newly discovered transcripts as novel. © The Author 2016. Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.

  1. Reusing open data for learning database design through project development

    Directory of Open Access Journals (Sweden)

    Jose-Norberto MAZÓN

    2015-12-01

    Full Text Available This paper describes a novel methodology based on reusing open data for applying project-based learning in a Database Design subject of a university degree. This methodology is applied to the ARA (Alto Rendimiento Académico or High Academic Performance group taught in the degree in Computer Engineering at the University of Alicante (Spain during 2012/2013, 2013/2014, and 2014/2015. Openness philosophy implies that huge amount of data is available to students in tabular format, ready for reusing. In our teaching experience, students propose an original scenario where different open data can be reused to a specific goal. Then, it is proposed to design a database in order to manage this data in the envisioned scenario. Open data in the subject helps in instilling a creative and entrepreneur attitude in students, as well as encourages autonomous and lifelong learning. Surveys made to students at the end of each year shown that reusing open data within project-based learning methodologies makes more motivated students since they are using real data.

  2. Techniques to Access Databases and Integrate Data for Hydrologic Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Whelan, Gene; Tenney, Nathan D.; Pelton, Mitchell A.; Coleman, Andre M.; Ward, Duane L.; Droppo, James G.; Meyer, Philip D.; Dorow, Kevin E.; Taira, Randal Y.

    2009-06-17

    This document addresses techniques to access and integrate data for defining site-specific conditions and behaviors associated with ground-water and surface-water radionuclide transport applicable to U.S. Nuclear Regulatory Commission reviews. Environmental models typically require input data from multiple internal and external sources that may include, but are not limited to, stream and rainfall gage data, meteorological data, hydrogeological data, habitat data, and biological data. These data may be retrieved from a variety of organizations (e.g., federal, state, and regional) and source types (e.g., HTTP, FTP, and databases). Available data sources relevant to hydrologic analyses for reactor licensing are identified and reviewed. The data sources described can be useful to define model inputs and parameters, including site features (e.g., watershed boundaries, stream locations, reservoirs, site topography), site properties (e.g., surface conditions, subsurface hydraulic properties, water quality), and site boundary conditions, input forcings, and extreme events (e.g., stream discharge, lake levels, precipitation, recharge, flood and drought characteristics). Available software tools for accessing established databases, retrieving the data, and integrating it with models were identified and reviewed. The emphasis in this review was on existing software products with minimal required modifications to enable their use with the FRAMES modeling framework. The ability of four of these tools to access and retrieve the identified data sources was reviewed. These four software tools were the Hydrologic Data Acquisition and Processing System (HDAPS), Integrated Water Resources Modeling System (IWRMS) External Data Harvester, Data for Environmental Modeling Environmental Data Download Tool (D4EM EDDT), and the FRAMES Internet Database Tools. The IWRMS External Data Harvester and the D4EM EDDT were identified as the most promising tools based on their ability to access and

  3. Database Description - Open TG-GATEs Pathological Image Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available oxicogenomics Informatics Project Creator Affiliation: National Institute of Biomedical...xicogenomics Informatics Project National Institute of Biomedical Innovation 7-6-8, Saito-asagi, Ibaraki-cit...l website information Database maintenance site Toxicogenomics Informatics Project, National Institute of Biomedical

  4. Free Education for Open Learning: Open educational policies, strategies & access for all

    NARCIS (Netherlands)

    Stracke, Christian M.

    2016-01-01

    Invited Speech at the Moscow International Education Fair 2016, Moscow, Russian Federation, by Stracke, C. M. (2016, 15 April): "Free Education for Open Learning: Open educational policies, strategies & access for all"

  5. Introducing Open Highlights: Highlighting Open Access Research from PLOS and Beyond.

    Science.gov (United States)

    2016-07-01

    PLOS Biology announces a new article type, Open Highlights, which uses a recent research article to nucleate a short synthesis of up to ten related research articles from other PLOS journals and from the wider Open Access corpus.

  6. Free Education for Open Learning: Open educational policies, strategies & access for all

    NARCIS (Netherlands)

    Stracke, Christian M.

    2016-01-01

    Invited Speech at the Moscow International Education Fair 2016, Moscow, Russian Federation, by Stracke, C. M. (2016, 15 April): "Free Education for Open Learning: Open educational policies, strategies & access for all"

  7. The Critical Role of Institutional Services in Open Access Advocacy

    Directory of Open Access Journals (Sweden)

    Tomasz Neugebauer

    2013-06-01

    Full Text Available This paper examines the development of the Open Access movement in scholarly communication, with particular attention to some of the rhetorical strategies and policy mechanisms used to promote it to scholars and scientists. Despite the majority of journal publishers’ acceptance of author self-archiving practices, and the minimal time commitment required by authors to successfully self-archive their work in disciplinary or institutional repositories, the majority of authors still by and large avoid participation. The paper reviews the strategies and arguments used for increasing author participation in open access, including the role of open access mandates. We recommend a service-oriented approach towards increasing participation in open access, rather than rhetoric that speculates on the benefits that open access will have on text/data mining innovation. In advocating for open access participation, we recommend focusing on its most universal and tangible purpose: increasing public open (gratis access to the published results of publicly funded research. Researchers require strong institutional support to understand the copyright climate of open access self-archiving, user-friendly interfaces and useful metrics, such as repository usage statistics. We recommend that mandates and well-crafted and responsive author support services at universities will ultimately be required to ensure the growth of open access. We describe the mediated deposit service that was developed to support author self-archiving in Spectrum: Concordia University Research Repository. By comparing the number of deposits of non-thesis materials (e.g. articles and conference presentations that were accomplished through the staff-mediated deposit service to the number of deposits that were author-initiated, we demonstrate the relative significance of this service to the growth of the repository.

  8. What is needed for effective open access workflows?

    CERN Document Server

    CERN. Geneva

    2017-01-01

    Institutions and funders are pushing forward open access with ever new guidelines and policies. Since institutional repositories are important maintainers of green open access, they should support easy and fast workflows for researchers and libraries to release publications. Based on the requirements specification of researchers, libraries and publishers, possible supporting software extensions are discussed. How does a typical workflow look like? What has to be considered by the researchers and by the editors in the library before releasing a green open access publication? Where and how can software support and improve existing workflows?

  9. Beyond Open Access: (re)use, impact and the ethos of openness in digital editing

    NARCIS (Netherlands)

    Sichani, Anna-Maria

    2016-01-01

    In recent years, concepts such as Open Access, Open Data, Open Source and other open scholarship practices have exerted an increasingly prevalent influence on the digital information environment in which scholarly content is created and disseminated. Originating from academics and libraries calling

  10. Open Mobile API: Accessing the UICC on Android Devices

    OpenAIRE

    Roland, Michael; Hölzl, Michael

    2016-01-01

    This report gives an overview of secure element integration into Android devices. It focuses on the Open Mobile API as an open interface to access secure elements from Android applications. The overall architecture of the Open Mobile API is described and current Android devices are analyzed with regard to the availability of this API. Moreover, this report summarizes our efforts of reverse engineering the stock ROM of a Samsung Galaxy S3 in order to analyze the integration of the Open Mobile ...

  11. Facility Accessibility: Opening the Doors to All

    Science.gov (United States)

    Petersen, Jeffrey C.; Piletic, Cindy K.

    2006-01-01

    A facility developed for fitness, physical activity, recreation, or sport is a vital community resource that contributes to the overall health and wellness of that community's citizens. In order to maximize the benefits derived from these facilities, it is imperative that they be accessible to as wide a range of people as possible. The Americans…

  12. The Costs of Open and Closed Access: Using the Finnish Research Output as an Example

    Directory of Open Access Journals (Sweden)

    Jyrki Ilva

    2016-04-01

    Full Text Available The Open Access movement in scientific publishing has been gathering momentum in the European Union and its member states, partly due to the policies of some of its main research funders. Already we have seen encouraging research results on the effects of openness on the dissemination of scientific outputs. As business models of Open Access publishing are still under development, the aim of our paper is to assess the statistical tools and data that the Finnish libraries currently have for comparing the costs associated with different modes of disseminating scientific publications. We will also analyse the potential costs associated with Open Access publishing models and compare them with the current cost structure of – mostly – paywalled (PW access. The discussion will include a description of current Finnish Open Access policies and their funding models. The financial analysis will be based on the statistical data found in the national Research Library Statistics database and the Finnish National Research Publications database, Juuli. We will discuss the alternatives on how best to develop statistical tools to estimate the true costs of scientific publishing.

  13. The future of academic publishing: what is open access?

    Science.gov (United States)

    Collins, Jannette

    2005-04-01

    For more than 200 years, publishers have been charging users (i.e., subscribers) for access to scientific information to make a profit. Authors have been required to grant copyright ownership to the publisher. This system was not questioned until the Internet popularized electronic publishing. The Internet allows for rapid dissemination of information to millions of readers. Some people have seen this as an opportunity to revolutionize the system of scientific publishing and to make it one that provides free, open access to all scientific information to all persons everywhere in the world. Such systems have been launched and have instigated a wave of dialogue among proponents and opponents alike. At the center of the controversy is the issue of who will pay for the costs of publishing, because an open-access system is not free, and this threatens the backbone of the traditional publishing industry. Currently, open-access publishers charge authors a fee to have their articles published. Because of this and the uncertainty of the sustainability of the open-access system, some authors are hesitant to participate in the new system. This article reviews the events that led to the creation of open-access publishing, the arguments for and against it, and the implications of open access for the future of academic publishing.

  14. NCBI2RDF: Enabling Full RDF-Based Access to NCBI Databases

    OpenAIRE

    Alberto Anguita; Miguel García-Remesal; Diana de la Iglesia; Victor Maojo

    2013-01-01

    RDF has become the standard technology for enabling interoperability among heterogeneous biomedical databases. The NCBI provides access to a large set of life sciences databases through a common interface called Entrez. However, the latter does not provide RDF-based access to such databases, and, therefore, they cannot be integrated with other RDF-compliant databases and accessed via SPARQL query interfaces. This paper presents the NCBI2RDF system, aimed at providing RDF-based access to the c...

  15. libChEBI: an API for accessing the ChEBI database.

    Science.gov (United States)

    Swainston, Neil; Hastings, Janna; Dekker, Adriano; Muthukrishnan, Venkatesh; May, John; Steinbeck, Christoph; Mendes, Pedro

    2016-01-01

    ChEBI is a database and ontology of chemical entities of biological interest. It is widely used as a source of identifiers to facilitate unambiguous reference to chemical entities within biological models, databases, ontologies and literature. ChEBI contains a wealth of chemical data, covering over 46,500 distinct chemical entities, and related data such as chemical formula, charge, molecular mass, structure, synonyms and links to external databases. Furthermore, ChEBI is an ontology, and thus provides meaningful links between chemical entities. Unlike many other resources, ChEBI is fully human-curated, providing a reliable, non-redundant collection of chemical entities and related data. While ChEBI is supported by a web service for programmatic access and a number of download files, it does not have an API library to facilitate the use of ChEBI and its data in cheminformatics software. To provide this missing functionality, libChEBI, a comprehensive API library for accessing ChEBI data, is introduced. libChEBI is available in Java, Python and MATLAB versions from http://github.com/libChEBI, and provides full programmatic access to all data held within the ChEBI database through a simple and documented API. libChEBI is reliant upon the (automated) download and regular update of flat files that are held locally. As such, libChEBI can be embedded in both on- and off-line software applications. libChEBI allows better support of ChEBI and its data in the development of new cheminformatics software. Covering three key programming languages, it allows for the entirety of the ChEBI database to be accessed easily and quickly through a simple API. All code is open access and freely available.

  16. Aerospace—An Open Access Journal

    Directory of Open Access Journals (Sweden)

    Konstantinos Kontis

    2014-11-01

    Full Text Available Welcome to Aerospace, an open journal covering aerospace science, engineering and technology. We seek to publish theoretical, fundamental, and applied results linked to potential applications related to research, design, manufacture, operations, control and maintenance of aircraft and spacecraft. A full description of the journal scope can be found on the journal website [1].[...

  17. BOM@ERCIM - Towards an open access policy For ERCIM

    NARCIS (Netherlands)

    Baeten, J.; Candela, L.; Fava, I.; Kirchner, C.; Mettrop, W.; Romary, L.; Schultze, L.

    2015-01-01

    This working paper presents collects background elements that have been discussed when designing the set of recommendations expressed in the BOM report. Such background elements highlight the key role current and future repositories may play in the open access arena.

  18. Scientific Data Science and the Case for Open Access

    CERN Document Server

    Sarma, Gopal P

    2016-01-01

    "Open access" has become a central theme of journal reform in academic publishing. In this article, I examine the consequences of an important technological loophole in which publishers can claim to be adhering to the principles of open access by releasing articles in proprietary or "locked" formats that cannot be processed by automated tools, whereby even simple copy and pasting of text is disabled. These restrictions will prevent the development of an important infrastructural element of a modern research enterprise, namely, scientific data science, or the use of data analytic techniques to conduct meta-analyses and investigations into the scientific corpus. I give a brief history of the open access movement, discuss novel journalistic practices, and an overview of data-driven investigation of the scientific corpus. I argue that particularly in an era where the veracity of many research studies has been called into question, scientific data science should be one of the key motivations for open access publis...

  19. Open Access and Institutional Policy: Time for Reexamination.

    Science.gov (United States)

    Richardson, Richard C., Jr.

    1983-01-01

    Focuses on the changes caused in community colleges by open access policies and the resultant influx of underprepared students. Recommends that community colleges accept a decline in student enrollment in exchange for improvement in student achievement. (DMM)

  20. BOM@ERCIM - Towards an open access policy For ERCIM

    NARCIS (Netherlands)

    Baeten, J.; Candela, L.; Fava, I.; Kirchner, C.; Mettrop, W.; Romary, L.; Schultze, L.

    2015-01-01

    This working paper presents collects background elements that have been discussed when designing the set of recommendations expressed in the BOM report. Such background elements highlight the key role current and future repositories may play in the open access arena.

  1. Launch of physics journals boosts open-access club

    CERN Multimedia

    2007-01-01

    "Open-access publisher BioMed Central is launching three new physics journals under the sister brand-name PhysMath Central. they will sit alongside the company's portfolio of 176 biomedical titles." (1/4 page)

  2. OSSI-PET: Open-Access Database of Simulated [(11)C]Raclopride Scans for the Inveon Preclinical PET Scanner: Application to the Optimization of Reconstruction Methods for Dynamic Studies.

    Science.gov (United States)

    Garcia, Marie-Paule; Charil, Arnaud; Callaghan, Paul; Wimberley, Catriona; Busso, Florian; Gregoire, Marie-Claude; Bardies, Manuel; Reilhac, Anthonin

    2016-07-01

    A wide range of medical imaging applications benefits from the availability of realistic ground truth data. In the case of positron emission tomography (PET), ground truth data is crucial to validate processing algorithms and assessing their performances. The design of such ground truth data often relies on Monte-Carlo simulation techniques. Since the creation of a large dataset is not trivial both in terms of computing time and realism, we propose the OSSI-PET database containing 350 simulated [(11)C]Raclopride dynamic scans for rats, created specifically for the Inveon pre-clinical PET scanner. The originality of this database lies on the availability of several groups of scans with controlled biological variations in the striata. Besides, each group consists of a large number of realizations (i.e., noise replicates). We present the construction methodology of this database using rat pharmacokinetic and anatomical models. A first application using the OSSI-PET database is presented. Several commonly used reconstruction techniques were compared in terms of image quality, accuracy and variability of the activity estimates and of the computed kinetic parameters. The results showed that OP-OSEM3D iterative reconstruction method outperformed the other tested methods. Analytical methods such as FBP2D and 3DRP also produced satisfactory results. However, FORE followed by OSEM2D reconstructions should be avoided. Beyond the illustration of the potential of the database, this application will help scientists to understand the different sources of noise and bias that can occur at the different steps in the processing and will be very useful for choosing appropriate reconstruction methods and parameters.

  3. Full Open Access Journals Have Increased Impact Factors

    Directory of Open Access Journals (Sweden)

    Shu-Kun Lin

    2009-06-01

    Full Text Available We are pleased to report the increase of the impact factors of MDPI journals during 2007 and 2008. In 2005 and part of 2006, the use of a two tier publication system, whereby we offered full Open Access publication to those authors willing to contribute financially to support this option, while providing the alternative choice of free publication without Open Access for those authors who preferred not to pay, resulted in the obviously decreased impact factors seen in 2006 [...

  4. Human membrane transporter database: a Web-accessible relational database for drug transport studies and pharmacogenomics.

    Science.gov (United States)

    Yan, Q; Sadée, W

    2000-01-01

    The human genome contains numerous genes that encode membrane transporters and related proteins. For drug discovery, development, and targeting, one needs to know which transporters play a role in drug disposition and effects. Moreover, genetic polymorphisms in human membrane transporters may contribute to interindividual differences in the response to drugs. Pharmacogenetics, and, on a genome-wide basis, pharmacogenomics, address the effect of genetic variants on an individual's response to drugs and xenobiotics. However, our knowledge of the relevant transporters is limited at present. To facilitate the study of drug transporters on a broad scale, including the use of microarray technology, we have constructed a human membrane transporter database (HMTD). Even though it is still largely incomplete, the database contains information on more than 250 human membrane transporters, such as sequence, gene family, structure, function, substrate, tissue distribution, and genetic disorders associated with transporter polymorphisms. Readers are invited to submit additional data. Implemented as a relational database, HMTD supports complex biological queries. Accessible through a Web browser user interface via Common Gateway Interface (CGI) and Java Database Connection (JDBC), HMTD also provides useful links and references, allowing interactive searching and downloading of data. Taking advantage of the features of an electronic journal, this paper serves as an interactive tutorial for using the database, which we expect to develop into a research tool.

  5. Knowledge unbound selected writings on Open Access, 2002-2011

    CERN Document Server

    Suber, Peter

    2016-01-01

    Peter Suber has been a leading advocate for open access since 2001 and has worked full time on issues of open access since 2003. As a professor of philosophy during the early days of the internet, he realized its power and potential as a medium for scholarship. As he writes now, "it was like an asteroid crash, fundamentally changing the environment, challenging dinosaurs to adapt, and challenging all of us to figure out whether we were dinosaurs." When Suber began putting his writings and course materials online for anyone to use for any purpose, he soon experienced the benefits of that wider exposure. In 2001, he started a newsletter -- the Free Online Scholarship Newsletter, which later became the SPARC Open Access Newsletter -- in which he explored the implications of open access for research and scholarship. This book offers a selection of some of Suber's most significant and influential writings on open access from 2002 to 2010. In these texts, Suber makes the case for open access to research; answers c...

  6. [Reconceptualising the meaning of scientific communication: open access].

    Science.gov (United States)

    Guédon, Jean-Claude

    2008-01-01

    The recent US law (H.R.2764) affecting NIH policy and the recent unanimous vote by the Arts and Science faculty of Harvard University in favour of a mandatory deposit of researchers' publications in a suitable repository have brought the Open Access movement into public light. After reviewing the historical background of Open Access, its evolution and extension in the United States, Great Britain, France and Canada are examined. Policies aiming at strengthening Open Access to scientific research are viewed as the direct consequence of treating scientific publishing as an integral part of the research cycle. It should, therefore, be wrapped into the financing of research. As the greater part of research is funded by public money, it appears legitimate to make its results as widely available as is possible. Open Access journals and repositories with strong deposit mandates form the backbone of the strategies to achieve the objective of Open Access. Despite the claims of some publishers, Open Access does not weaken or threaten the peer review process, and it does not conflict with copyright laws.

  7. Update on copyright issues and open access

    CERN Document Server

    CERN. Geneva

    2005-01-01

    When writing an article an author encounters several moments where he is confronted with copyright whether he likes it or not or whether he is interested in the topic or not. Unfamiliarity or lack of interest with copyright can create an unbalance in the careful package of the balances which copyright is and thus hinder innovation of the process of scholarly communication. The Dutch SURF Foundation together with its British counterpart JISC have developed a © toolkit which supports and assists authors, librarians, legal offices and publishers to (re)phrase publishing agreements and copyright policies of institutions of higher education to achieve maximum access to scientific output.

  8. ZeBase: an open-source relational database for zebrafish laboratories.

    Science.gov (United States)

    Hensley, Monica R; Hassenplug, Eric; McPhail, Rodney; Leung, Yuk Fai

    2012-03-01

    Abstract ZeBase is an open-source relational database for zebrafish inventory. It is designed for the recording of genetic, breeding, and survival information of fish lines maintained in a single- or multi-laboratory environment. Users can easily access ZeBase through standard web-browsers anywhere on a network. Convenient search and reporting functions are available to facilitate routine inventory work; such functions can also be automated by simple scripting. Optional barcode generation and scanning are also built-in for easy access to the information related to any fish. Further information of the database and an example implementation can be found at http://zebase.bio.purdue.edu.

  9. Celebrations and Tough Questions Follow Harvard's Move to Open Access

    Science.gov (United States)

    Guterman, Lila

    2008-01-01

    In light of a decision by members of Harvard University's Faculty of Arts and Sciences to make access to their scholarly papers free, advocates of open access celebrated, but some publishers expressed concern. Members of Harvard's Faculty of Arts and Sciences voted unanimously to provide the university with copies of their published articles and…

  10. Open Access: What You Need to Know Now

    Science.gov (United States)

    Crawford, Walt

    2011-01-01

    Academic libraries routinely struggle to afford access to expensive journals, and patrons may not be able to obtain every scholarly paper they need. Is Open Access (OA) the answer? In this ALA Editions Special Report, Crawford helps readers understand what OA is (and isn't), as he concisely: (1) Analyzes the factors that have brought libraries to…

  11. Coalition works to secure open access to published research

    CERN Multimedia

    Brown, Susan

    2006-01-01

    "Paying upfront: a group of particle physicists has proposed a new way to pay for immediate free access to journal articles in their field. They want to raise five million to six million euros (about US $7-million) a year to buy open access to peer-reviewed papers in top physics journals. (2 pages)

  12. The ambassadors’ honor: a citation policy for open access

    Directory of Open Access Journals (Sweden)

    Maria Chiara Pievatolo

    2011-09-01

    Full Text Available The authors whose works are openly accessible make a public use of reason. The ones that prefer closed access make a private use of it. They do not address themselves to the citizens of the world through the best media technology available: they talk only to the restricted group of people who can afford to [...

  13. Open Access: What You Need to Know Now

    Science.gov (United States)

    Crawford, Walt

    2011-01-01

    Academic libraries routinely struggle to afford access to expensive journals, and patrons may not be able to obtain every scholarly paper they need. Is Open Access (OA) the answer? In this ALA Editions Special Report, Crawford helps readers understand what OA is (and isn't), as he concisely: (1) Analyzes the factors that have brought libraries to…

  14. Expanding access to published research: open access and self-archiving.

    Science.gov (United States)

    Mower, Allyson; Youngkin, Mary E

    2008-03-01

    Academic libraries traditionally provide access to the life science journal literature for their respective institutions by purchasing annual subscriptions to journals. However, with skyrocketing subscription prices and decreased or flattened library budgets, fewer journals are being purchased. This trend results in diminished access to the literature for members of that institution. Open access and self-archiving are possible solutions to this crisis.

  15. Open Access to Scientific Data: Promoting Science and Innovation

    Directory of Open Access Journals (Sweden)

    Guan-Hua Xu

    2007-06-01

    Full Text Available As an important part of the science and technology infrastructure platform of China, the Ministry of Science and Technology launched the Scientific Data Sharing Program in 2002. Twenty-four government agencies now participate in the Program. After five years of hard work, great progress has been achieved in the policy and legal framework, data standards, pilot projects, and international cooperation. By the end of 2005, one-third of the existing public-interest and basic scientific databases in China had been integrated and upgraded. By 2020, China is expected to build a more user-friendly scientific data management and sharing system, with 80 percent of scientific data available to the general public. In order to realize this objective, the emphases of the project are to perfect the policy and legislation system, improve the quality of data resources, expand and establish national scientific data centers, and strengthen international cooperation. It is believed that with the opening up of access to scientific data in China, the Program will play a bigger role in promoting science and national innovation.

  16. jSPyDB, an open source database-independent tool for data management

    Science.gov (United States)

    Pierro, Giuseppe Antonio; Cavallari, Francesca; Di Guida, Salvatore; Innocente, Vincenzo

    2011-12-01

    Nowadays, the number of commercial tools available for accessing Databases, built on Java or .Net, is increasing. However, many of these applications have several drawbacks: usually they are not open-source, they provide interfaces only with a specific kind of database, they are platform-dependent and very CPU and memory consuming. jSPyDB is a free web-based tool written using Python and Javascript. It relies on jQuery and python libraries, and is intended to provide a simple handler to different database technologies inside a local web browser. Such a tool, exploiting fast access libraries such as SQLAlchemy, is easy to install, and to configure. The design of this tool envisages three layers. The front-end client side in the local web browser communicates with a backend server. Only the server is able to connect to the different databases for the purposes of performing data definition and manipulation. The server makes the data available to the client, so that the user can display and handle them safely. Moreover, thanks to jQuery libraries, this tool supports export of data in different formats, such as XML and JSON. Finally, by using a set of pre-defined functions, users are allowed to create their customized views for a better data visualization. In this way, we optimize the performance of database servers by avoiding short connections and concurrent sessions. In addition, security is enforced since we do not provide users the possibility to directly execute any SQL statement.

  17. DABAM: an open-source database of X-ray mirrors metrology

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez del Rio, Manuel, E-mail: srio@esrf.eu [ESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble (France); Bianchi, Davide [AC2T Research GmbH, Viktro-Kaplan-Strasse 2-C, 2700 Wiener Neustadt (Austria); Cocco, Daniele [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); Glass, Mark [ESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble (France); Idir, Mourad [NSLS II, Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); Metz, Jim [InSync Inc., 2511C Broadbent Parkway, Albuquerque, NM 87107 (United States); Raimondi, Lorenzo; Rebuffi, Luca [Elettra-Sincrotrone Trieste SCpA, Basovizza (TS) (Italy); Reininger, Ruben; Shi, Xianbo [Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439 (United States); Siewert, Frank [BESSY II, Helmholtz Zentrum Berlin, Institute for Nanometre Optics and Technology, Albert-Einstein-Strasse 15, 12489 Berlin (Germany); Spielmann-Jaeggi, Sibylle [Swiss Light Source at Paul Scherrer Institut, CH-5232 Villigen PSI (Switzerland); Takacs, Peter [Instrumentation Division, Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); Tomasset, Muriel [Synchrotron Soleil (France); Tonnessen, Tom [InSync Inc., 2511C Broadbent Parkway, Albuquerque, NM 87107 (United States); Vivo, Amparo [ESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble (France); Yashchuk, Valeriy [Advanced Light Source, Lawrence Berkeley National Laboratory, MS 15-R0317, 1 Cyclotron Road, Berkeley, CA 94720-8199 (United States)

    2016-04-20

    DABAM, an open-source database of X-ray mirrors metrology to be used with ray-tracing and wave-propagation codes for simulating the effect of the surface errors on the performance of a synchrotron radiation beamline. An open-source database containing metrology data for X-ray mirrors is presented. It makes available metrology data (mirror heights and slopes profiles) that can be used with simulation tools for calculating the effects of optical surface errors in the performances of an optical instrument, such as a synchrotron beamline. A typical case is the degradation of the intensity profile at the focal position in a beamline due to mirror surface errors. This database for metrology (DABAM) aims to provide to the users of simulation tools the data of real mirrors. The data included in the database are described in this paper, with details of how the mirror parameters are stored. An accompanying software is provided to allow simple access and processing of these data, calculate the most usual statistical parameters, and also include the option of creating input files for most used simulation codes. Some optics simulations are presented and discussed to illustrate the real use of the profiles from the database.

  18. An Open Access future? Report from the eurocancercoms project

    Science.gov (United States)

    Kenney, R; Warden, R

    2011-01-01

    In March 2011, as part of the background research to the FP7 Eurocancercoms project, the European Association for Cancer Research (EACR) conducted an online survey of its members working in Europe to discover their experiences of and attitudes to the issues surrounding academic publishing and Open Access. This paper presents the results from this survey and compares them to the results from a much larger survey on the same topic from the Study of Open Access Publishing (SOAP). The responses from both surveys show very positive attitudes to the Open Access publishing route; perhaps the most challenging statistic from the EACR survey is that 88% of respondents believe that publicly funded research should be made available to be read and used without access barriers As a conclusion and invitation to further discussion, this paper also contributes to the debate around subscription and Open Access publishing, supporting the case for accelerating the progress towards Open Access publishing of cancer research articles as a particularly supportive way of assisting all researchers to make unhindered progress with their work. PMID:22276063

  19. Gold or green: the debate on open access policies.

    Science.gov (United States)

    Abadal, Ernest

    2013-09-01

    The movement for open access to science seeks to achieve unrestricted and free access to academic publications on the Internet. To this end, two mechanisms have been established: the gold road, in which scientific journals are openly accessible, and the green road, in which publications are self-archived in repositories. The publication of the Finch Report in 2012, advocating exclusively the adoption of the gold road, generated a debate as to whether either of the two options should be prioritized. The recommendations of the Finch Report stirred controversy among academicians specialized in open access issues, who felt that the role played by repositories was not adequately considered and because the green road places the burden of publishing costs basically on authors. The Finch Report's conclusions are compatible with the characteristics of science communication in the UK and they could surely also be applied to the (few) countries with a powerful publishing industry and substantial research funding. In Spain, both the current national legislation and the existing rules at universities largely advocate the green road. This is directly related to the structure of scientific communication in Spain, where many journals have little commercial significance, the system of charging a fee to authors has not been adopted, and there is a good repository infrastructure. As for open access policies, the performance of the scientific communication system in each country should be carefully analyzed to determine the most suitable open access strategy.

  20. An Open Access future? Report from the eurocancercoms project.

    Science.gov (United States)

    Kenney, R; Warden, R

    2011-01-01

    In March 2011, as part of the background research to the FP7 Eurocancercoms project, the European Association for Cancer Research (EACR) conducted an online survey of its members working in Europe to discover their experiences of and attitudes to the issues surrounding academic publishing and Open Access. This paper presents the results from this survey and compares them to the results from a much larger survey on the same topic from the Study of Open Access Publishing (SOAP). The responses from both surveys show very positive attitudes to the Open Access publishing route; perhaps the most challenging statistic from the EACR survey is that 88% of respondents believe that publicly funded research should be made available to be read and used without access barriersAs a conclusion and invitation to further discussion, this paper also contributes to the debate around subscription and Open Access publishing, supporting the case for accelerating the progress towards Open Access publishing of cancer research articles as a particularly supportive way of assisting all researchers to make unhindered progress with their work.

  1. Use of the Paid Open Access Option in Hybrid Open Access Journals in Agriculture: A Mixed-Methods Study

    Directory of Open Access Journals (Sweden)

    Megan Kocher

    2016-12-01

    Full Text Available We explore the use and usefulness of the hybrid open access publishing model in agricultural sciences using a combination of quantitative and qualitative methods. To ascertain the level of usage of the paid open access option in hybrid open access journals in agriculture, we studied the agriculture-related journals published by six commercial publishers. These publishers offer authors the option of paying a fee, often close to $3,000 per article, to make their article immediately freely available, usually with a Creative Commons license. We defined agriculture broadly but also assigned each journal to a subspecialty (e.g., animal science in order to see if there were differences based on these subdivisions. For each journal we gathered data for 2014-2015 and noted the total number of research articles and the number of those that were made freely available by authors paying the open access fee. To give context to our results we also surveyed local faculty in agricultural sciences, asking their reasons for considering the paid open access options and the sources of the funds to pay for it. Survey respondents were asked about their academic position and rank to see if there were differences to be noted. We also investigated the findability of the open access articles, noting if each individual publisher offered a way to easily locate all the freely available articles in a particular journal and if there are other avenues to easily locate these articles.

  2. Spectral engineering of coupled open-access microcavities

    CERN Document Server

    Flatten, L C; Smith, J M

    2015-01-01

    Open-access microcavities are emerging as a new approach to confine and engineer light down to the {\\lambda}^3 regime. Indeed, they offer direct access to a highly confined electromagnetic field while maintaining tunability of the system and flexibility on the light emitter studied. In this article, we present the first development beyond the single open-access cavity design using a Focused Ion Beam fabrication method. Based on experimental and theoretical investigation, we demonstrate the engineering of the coupling between two open-access microcavities with radius of curvature of 6 {\\mu}m. We study the evolution of spectral, spatial and polarisation properties through a transition from isolated to coupled cavities. Normal mode splittings up to 20 meV are observed for total mode volumes around 10 {\\lambda}^3 . This work is of importance for future development of photonic circuits for quantum computation, optical meta-materials and lab-on-a-chip sensing.

  3. Open Access e-books come into play

    CERN Multimedia

    Tullio Basaglia

    2015-01-01

    According to the Directory of Open Access Journals, more than 10,000 journals are available on an open access (OA) basis. Building on this success, e-books are also now becoming available under this popular publishing scheme, proving that open access is steadily gaining momentum in scholarly scientific communication.   The economic model is largely inspired by well-established experience in the publishing of articles, and several publishers have expanded their OA programmes to include books. Today, negotiations with such publishers make it possible for books to be available with an appropriate licence, according to which the authors retain copyright while the content can be freely shared and reused, provided the author is credited appropriately. The introduction of e-books, in addition to expanding the diffusion of the written word and the relevant content, helps avoid the costs of the production and distribution of paper books that result in high prices for titles, making them accessible only to li...

  4. Open Learning for Smart Education: Open educational policies, strategies & access for all

    NARCIS (Netherlands)

    Stracke, Christian M.

    2016-01-01

    keynote on Open Learning at the International IEEE EDUCON Conference 2016: I will speak about “Open Learning for Smart Education: Open educational policies, strategies and access for all”. This year EDUCON is taking place from 10th to 13th of April 2016 in Abu Dhabi. My questions of the keynote on

  5. Taking the Plunge: Open Access at the "Canadian Journal of Sociology." Case Studies in Open Access Publishing. Number Five

    Science.gov (United States)

    Haggerty, Kevin D.

    2008-01-01

    Introduction: Presents a personal account of the transfer to open access of the leading Canadian journal of sociology. Background: The Canadian Journal of Sociology had established a strong position, internationally, among sociology journals. However, subscriptions were falling as readers increasingly accessed the resource through libraries and a…

  6. Future mobile access for open-data platforms and the BBC-DaaS system

    Science.gov (United States)

    Edlich, Stefan; Singh, Sonam; Pfennigstorf, Ingo

    2013-03-01

    In this paper, we develop an open data platform on multimedia devices to act as marketplace of data for information seekers and data providers. We explore the important aspects of Data-as-a-Service (DaaS) service in the cloud with a mobile access point. The basis of the DaaS service is to act as a marketplace for information, utilizing new technologies and recent new scalable polyglot architectures based on NoSql databases. Whereas Open-Data platforms are beginning to be widely accepted, its mobile use is not. We compare similar products, their approach and a possible mobile usage. We discuss several approaches to address the mobile access as a native app, html5 and a mobile first approach together with the several frontend presentation techniques. Big data visualization itself is in the early days and we explore some possibilities to get big data / open data accessed by mobile users.

  7. MPOD: A Material Property Open Database linked to structural information

    Science.gov (United States)

    Pepponi, Giancarlo; Gražulis, Saulius; Chateigner, Daniel

    2012-08-01

    Inspired by the Crystallography Open Database (COD), the Material Properties Open Database (MPOD) was given birth. MPOD aims at collecting and making publicly available at no charge tensorial properties (including scalar properties) of phases and linking such properties to structural information of the COD when available. MPOD files are written with the STAR file syntax, used and developed for the Crystallographic Information Files. A dictionary containing new definitions has been written according to the Dictionary Definition Language 1, although some tricks were adopted to allow for multiple entries still avoiding ambiguousness. The initial set includes mechanical properties, elastic stiffness and compliance, internal friction; electrical properties, resistivity, dielectric permittivity and stiffness, thermodynamic properties, heat capacity, thermal conductivity, diffusivity and expansion; electromechanical properties, piezoelectricity, electrostriction, electromechanical coupling; optical properties; piezooptic and photoelastic properties; superconducting properties, critical fields, penetration and coherence lengths. Properties are reported in MPOD files where the original published paper containing the data is cited and structural and experimental information is also given. One MPOD file contains information relative to only one publication and one phase. The files and the information contained therein can also be consulted on-line at http://www.materialproperties.org.

  8. Pharmacology Portal: An Open Database for Clinical Pharmacologic Laboratory Services.

    Science.gov (United States)

    Karlsen Bjånes, Tormod; Mjåset Hjertø, Espen; Lønne, Lars; Aronsen, Lena; Andsnes Berg, Jon; Bergan, Stein; Otto Berg-Hansen, Grim; Bernard, Jean-Paul; Larsen Burns, Margrete; Toralf Fosen, Jan; Frost, Joachim; Hilberg, Thor; Krabseth, Hege-Merete; Kvan, Elena; Narum, Sigrid; Austgulen Westin, Andreas

    2016-01-01

    More than 50 Norwegian public and private laboratories provide one or more analyses for therapeutic drug monitoring or testing for drugs of abuse. Practices differ among laboratories, and analytical repertoires can change rapidly as new substances become available for analysis. The Pharmacology Portal was developed to provide an overview of these activities and to standardize the practices and terminology among laboratories. The Pharmacology Portal is a modern dynamic web database comprising all available analyses within therapeutic drug monitoring and testing for drugs of abuse in Norway. Content can be retrieved by using the search engine or by scrolling through substance lists. The core content is a substance registry updated by a national editorial board of experts within the field of clinical pharmacology. This ensures quality and consistency regarding substance terminologies and classification. All laboratories publish their own repertoires in a user-friendly workflow, adding laboratory-specific details to the core information in the substance registry. The user management system ensures that laboratories are restricted from editing content in the database core or in repertoires within other laboratory subpages. The portal is for nonprofit use, and has been fully funded by the Norwegian Medical Association, the Norwegian Society of Clinical Pharmacology, and the 8 largest pharmacologic institutions in Norway. The database server runs an open-source content management system that ensures flexibility with respect to further development projects, including the potential expansion of the Pharmacology Portal to other countries. Copyright © 2016 Elsevier HS Journals, Inc. All rights reserved.

  9. Ibmdbpy-spatial : An Open-source implementation of in-database geospatial analytics in Python

    Science.gov (United States)

    Roy, Avipsa; Fouché, Edouard; Rodriguez Morales, Rafael; Moehler, Gregor

    2017-04-01

    As the amount of spatial data acquired from several geodetic sources has grown over the years and as data infrastructure has become more powerful, the need for adoption of in-database analytic technology within geosciences has grown rapidly. In-database analytics on spatial data stored in a traditional enterprise data warehouse enables much faster retrieval and analysis for making better predictions about risks and opportunities, identifying trends and spot anomalies. Although there are a number of open-source spatial analysis libraries like geopandas and shapely available today, most of them have been restricted to manipulation and analysis of geometric objects with a dependency on GEOS and similar libraries. We present an open-source software package, written in Python, to fill the gap between spatial analysis and in-database analytics. Ibmdbpy-spatial provides a geospatial extension to the ibmdbpy package, implemented in 2015. It provides an interface for spatial data manipulation and access to in-database algorithms in IBM dashDB, a data warehouse platform with a spatial extender that runs as a service on IBM's cloud platform called Bluemix. Working in-database reduces the network overload, as the complete data need not be replicated into the user's local system altogether and only a subset of the entire dataset can be fetched into memory in a single instance. Ibmdbpy-spatial accelerates Python analytics by seamlessly pushing operations written in Python into the underlying database for execution using the dashDB spatial extender, thereby benefiting from in-database performance-enhancing features, such as columnar storage and parallel processing. The package is currently supported on Python versions from 2.7 up to 3.4. The basic architecture of the package consists of three main components - 1) a connection to the dashDB represented by the instance IdaDataBase, which uses a middleware API namely - pypyodbc or jaydebeapi to establish the database connection via

  10. Implementing Open Access Policy:First case studies

    Institute of Scientific and Technical Information of China (English)

    Chris; Armbruster

    2010-01-01

    When implementing open access,policy pioneers and flagship institutions alike have faced considerable challenges in meeting their own aims and achieving a recognized success.Legitimate authority,sufficient resources and the right timing are crucial,but the professionals charged with implementing policy still need several years to accomplish significant progress.This study defines a methodological standard for evaluating the first generation of open access policies.Evaluating implementation establishes evidence,enables reflection,and may foster the emergence of a second generation of open access policies.While the study is based on a small number of cases,these case studies cover most of the pioneer institutions,present the most significant issues and offer an international overview.Each case is reconstructed individually on the basis of public documents and background information,and supported by interviews with professionals responsible for open access implementation.This article presents the highlights from each case study.The results are utilized to indicate how a second generation of policies might define open access as a key component of digital research infrastructures that provide inputs and outputs for research,teaching and learning in real time.

  11. Open-Access Single Balloon Enteroscopy: A Tertiary Care Experience.

    Science.gov (United States)

    Holman, Nathan; Wallace, Kristin; Moore, J Matthew; Brock, Andrew S

    2015-12-01

    To compare single balloon enteroscopy (SBE) between patients seen in consultation by a member of our gastroenterology team with those performed as open-access cases. Retrospective study of all patients who underwent SBE at a single tertiary care center from April 2008 to January 2012. Open- and closed-access procedures were compared in terms of diagnostic and therapeutic yield, adverse events, and procedural success. A total of 125 SBEs were performed on 125 patients. The mean age was 63.1 (53% men) years. In all, 43 procedures were performed open access and 82 after face-to-face consultation. Indications included anemia/gastrointestinal bleeding (110), abdominal pain (8), and other (7). Diagnostic yield for open- and closed-access procedures was 53% and 60%, respectively (P = 0.501) and therapeutic yield was 37% and 52%, respectively (P = 0.11). Overall technical success was 91% with no difference between the groups (P = 0.27). There were no major adverse events in either group. SBE can be performed as an open-access procedure without compromise to safety or diagnostic yield.

  12. Open Access und Lizenzierung am Beispiel der Allianz-Lizenzen

    Directory of Open Access Journals (Sweden)

    Mirjam Blümm

    2012-10-01

    Full Text Available Im Kontext nationaler Lizenzen erscheinen die Begriffe Open Access auf der einen und Lizenzierung auf der anderen Seite zwei Gegenpole darzustellen – die freie versus kostenpflichtige Nutzung elektronischer Ressourcen. Der Aufsatz zeigt, warum dennoch beide Komponenten Bestandteil der neu entwickelten Allianz-Lizenzen sind. Dabei stellt er die verschiedenen Lizenzierungsmodelle der Deutschen Forschungsgemeinschaft in ihrer historischen Entwicklung von den Nationallizenzen Classics bis hin zu den seit Anfang des letzten Jahres bestehenden Allianz-Lizenzen vor. Letztere werden hinsichtlich ihrer Konzeption, des dahinterstehenden Lizenzierungsmodells und ihrer zukünftige Ausrichtung näher beleuchtet. Nachdem die Thematik in den Kontext der Open Access-Diskussion eingeordnet wurde, beschäftigt sich der Aufsatz im Weiteren mit der Position der Deutschen Forschungsgemeinschaft bezüglich der Handlungsfelder Open Access und Lizenzierung. Dem folgt eine Analyse, wie die Open Access-Komponente bei den einzelnen Produkten der Allianz-Lizenzen umgesetzt wurde und wie sich die Bedingungen von den in der SHERPA/RoMEO- Datenbank verzeichneten Rechten unterscheidet. Dies mündet in Überlegungen, wie die durch die Allianz-Lizenzen garantierten Open Access-Rechte bei den beteiligten Einrichtungen und Autoren umgesetzt werden können und ob sich dadurch künftig Veränderungen auf dem Publikationsmarkt ergeben.

  13. Quality Open Access market and other initiatives: a comparative analysis

    Directory of Open Access Journals (Sweden)

    Danielle van Gerestein

    2015-05-01

    Full Text Available Recently academic publishing has entered in a new era, namely that of open access publishing. This has resulted in the appearance of numerous new open access journals. Scholars who want to publish their work today have endless publishing possibilities to choose from, but who is able to tell them which journal is reliable? This used to be the job of librarians, but with approximately 17000 journals they are no longer able to keep up. For this reason several websites and services have started to gather information about open access journals in order to make an overview of reliable and unreliable journals. One of these services is called Quality Open Access Market (QOAM. In this article six other services (Directory of Open Access Journals, JournalReviewer, SciRev, Journalysis, Journalguide, PRE-val and Eigenfactor will be compared to QOAM in order to find out which service offers the best results. QOAM is taken as a starting point here because the research presented in this article was commissioned by them (namely: Saskia de Vries and Leo Waaijers in order to find out what value they can actually add.

  14. Understanding and Making Use of Academic Authors’ Open Access Rights

    Directory of Open Access Journals (Sweden)

    David Hansen

    2012-09-01

    Full Text Available INTRODUCTION Authors of academic works do not take full advantage of the self-archiving rights that they retain in their publications, though research shows that many academic authors are well-aligned (at least in principle with open access (OA principles. This article explains how institutionally-assisted self-archiving in open access repositories can effectively take advantage of retained rights and highlights at least one method of facilitating this process through automated means. METHODS To understand the scope of author-retained rights (including the right to purchase hybrid or other open access options at some sample universities, author-rights data through the SHERPA/RoMEO API was combined with individual article citations (from Thomson Reuters' Web of Science for works published over a one-year period (2011 and authored by individuals affiliated with five major U.S. research universities. RESULTS Authors retain significant rights in the articles that they create. Of the 29,322 unique articles authored over the one year period at the five universities, 28.83 percent could be archived in final PDF form and 87.95 percent could be archived as the post-print version. Nearly 43.47 percent also provided authors the choice of purchasing a hybrid paid open access option. DISCUSSION A significant percentage of current published output could be archived with little or no author intervention. With prior approval through an open access policy or otherwise, article manuscripts or final PDFs can be obtained and archived by library staff, and hybrid paid-OA options could be negotiated and exploited by library administrators. CONCLUSION Although mandates, legislation, and other policy tools may be useful to promote open access, many institutions already have the ability to increase the percentage of accessible works by taking advantage of retained author rights and hybrid OA options.

  15. OpenAIRE - Building a collaborative Open Access infrastructure for European researchers

    Directory of Open Access Journals (Sweden)

    Najla Rettberg

    2012-11-01

    Full Text Available This paper outlines the efforts of the OpenAIRE networking team to establish a Europe-wide open access initiative. OpenAIRE is an effort to realize the open access policies of the European Commission, and has built an infrastructure to support the widest possible dissemination of project results within a certain funding area, FP7. The purpose of the paper is to highlight how such a service can be established through the work of a successful network of European open access contacts and by effective communication with a range of stakeholders. The paper also outlines the flexible technical infrastructure and research activities within the project. Not without its challenges, the approach to tackling existing barriers, such as building repository interoperability, are explored. The paper also introduces the aims and initial activities of the continuation project, OpenAIREplus.

  16. Detection of heart disease by open access echocardiography: a retrospective analysis of general practice referrals.

    Science.gov (United States)

    Chambers, John; Kabir, Saleha; Cajeat, Eric

    2014-02-01

    Heart disease is difficult to detect clinically and it has been suggested that echocardiography should be available to all patients with possible cardiac symptoms or signs. To analyse the results of 2 years of open access echocardiography for the frequency of structural heart disease according to request. Retrospective database analysis in a teaching hospital open access echocardiography service. Reports of all open access transthoracic echocardiograms between January 2011 and December 2012 were categorised as normal, having minor abnormalities, or significant abnormalities according to the indication. There were 2343 open access echocardiograms performed and there were significant abnormalities in 29%, predominantly valve disease (n = 304, 13%), LV systolic dysfunction (n = 179, 8%), aortic dilatation (n = 80, 3%), or pulmonary hypertension (n = 91, 4%). If echocardiography had been targeted at a high-risk group, 267 with valve disease would have been detected (compared to 127 with murmur alone) and 139 with LV systolic dysfunction (compared to 91 with suspected heart failure alone). Most GP practices requested fewer than 10 studies, but 6 practices requested over 70 studies. Open access echocardiograms are often abnormal but structural disease may not be suspected from the clinical request. Uptake by individual practices is patchy. A targeted expansion of echocardiography in patients with a high likelihood of disease is therefore likely to increase the detection of clinically important pathology.

  17. jSPyDB, an open source database-independent tool for data management

    CERN Document Server

    Pierro, Giuseppe Antonio

    2010-01-01

    Nowadays, the number of commercial tools available for accessing Databases, built on Java or .Net, is increasing. However, many of these applications have several drawbacks: usually they are not open-source, they provide interfaces only with a specific kind of database, they are platform-dependent and very CPU and memory consuming. jSPyDB is a free web based tool written using Python and Javascript. It relies on jQuery and python libraries, and is intended to provide a simple handler to different Database technologies inside a local web browser. Such a tool, exploiting fast access libraries such as SQLAlchemy, is easy to install, and to configure. The design of this tool envisages three layers. The front-end client side in the local web browser communicates with a backend server. Only the server is able to connect to the different databases for the purposes of performing data definition and manipulation. The server makes the data available to the client, so that the user can display and handle them safely. ...

  18. 50 CFR 660.332 - Open access daily trip limit (DTL) fishery for sablefish.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access daily trip limit (DTL) fishery... COAST STATES West Coast Groundfish-Open Access Fisheries § 660.332 Open access daily trip limit (DTL) fishery for sablefish. (a) Open access DTL fisheries both north and south of 36° N. lat. Open...

  19. Steady impact factor growth for MDPI open access journals.

    Science.gov (United States)

    Thiesen, Alexander

    2012-09-12

    For the past three years MDPI has announced the newly released impact factors for its Open Access journals by the means of an annual editorial [1-3]. In 2012 we are-once again-pleased to report that the growth of the impact factors of MDPI's Open Access journals continues. This year's edition of the Journal Citation Reports (JCR), which is published annually by Thomson Reuters, includes 10 journals published by MDPI, including three that have received their first official Impact Factors- International Journal of Environmental Research and Public Health (IJERPH), Materials Nutrients. Table 1 reports the latest Impact Factors for 2011. Figure 1 graphically depicts the evolution of the Impact Factors for four MDPI open access journals that have received Impact Factors in the past. Table 2 reports the ranking of the MDPI journals within the subject categories of the Science Citation Index Expanded.

  20. Managing open access with EPrints software: a case study

    Directory of Open Access Journals (Sweden)

    Valerie McCutcheon

    2016-03-01

    Full Text Available Recent additional open access (OA requirements for publications by authors at UK higher education institutions require amendments to support mechanisms. These additional requirements arose primarily from the Research Councils UK Open Access Policy,1 applicable from April 2013, and the new OA policy for Research Excellence Framework2 eligibility published in March 2014 and applicable from April 2016.  Further provision also had to be made for compliance with the UK Charities Open Access Fund, the European Union, other funder policies, and internal reporting requirements.  In response, the University of Glasgow has enhanced its OA processes and systems. This case study charts our journey towards managing OA via our EPrints repository. The aim was to consolidate and manage OA information in one central place to increase efficiency of recording, tracking and reporting. We are delighted that considerable time savings and reduction in errors have been achieved by dispensing with spreadsheets to record decisions about OA.

  1. Steady Impact Factor Growth for MDPI Open Access Journals

    Directory of Open Access Journals (Sweden)

    Alexander Thiesen

    2012-09-01

    Full Text Available For the past three years MDPI has announced the newly released impact factors for its Open Access journals by the means of an annual editorial [1–3]. In 2012 we are—once again—pleased to report that the growth of the impact factors of MDPI’s Open Access journals continues. This year’s edition of the Journal Citation Reports (JCR, which is published annually by Thomson Reuters, includes 10 journals published by MDPI, including three that have received their first official Impact Factors—International Journal of Environmental Research and Public Health (IJERPH, Materials and Nutrients. Table 1 reports the latest Impact Factors for 2011. Figure 1 graphically depicts the evolution of the Impact Factors for four MDPI open access journals that have received Impact Factors in the past. Table 2 reports the ranking of the MDPI journals within the subject categories of the Science Citation Index Expanded (SCIE.

  2. LIS Open Access E-Journal - where are you?

    Directory of Open Access Journals (Sweden)

    Izabella Taler

    2008-12-01

    Full Text Available Access to published information is of interest to many users. Library and Information Science (LIS professionals are especially interested in gaining access and guiding users to all available information. Though they are often dependent on traditional subscription-based library resources, moving away from the costly ones and replacing them with usage of available open access sources, presents practitioners with a significant budget consideration in today's shrinking economy. This paper examines the availability of current LIS open access e-journals; their presence in well- and less-well known abstracting and indexing sources, their inclusion in standard library bibliographic tools as well as coverage by Google Scholar, a computer generated search engine.

  3. Open Access中文译名探讨%Discussion about Translated Terms of "Open Access"

    Institute of Scientific and Technical Information of China (English)

    马景娣

    2005-01-01

    搜集统计了国内目前现有的"Open Access"中文译名,根据全国科学技术名词审定委员会的,对"Open Access"的中文译名进行了剖析,从科学性、通俗性、习惯性以及语义的准确性等方面说明了目前绝大多数"Open Access"中文译名的不妥之处,提出"Open Access"较适宜的中文译名应为"开放访问".

  4. Cells — An Open Access Journal of Cell Biology

    Directory of Open Access Journals (Sweden)

    Shu-Kun Lin

    2011-01-01

    Full Text Available To expand the open access publishing project of our newly founded company MDPI [1,2] based in Basel, Switzerland, we are in the process of launching new journals. Based on our success in running journals that represent key areas in science and technology, such as Molecules [3], Sensors [4], Energies [5], Viruses [6], Pharmaceuticals [7], Cancers [8] and Toxins [9], we are launching a new journal entitled Cells. It is an open access journal combining cell biology, molecular biology and biophysics, toward an understanding of cell structure, function and interactions. [...

  5. Welcome to Bioengineering: A New Open-Access Journal

    Directory of Open Access Journals (Sweden)

    Anthony Guiseppi-Elie

    2013-12-01

    Full Text Available It is my great pleasure to welcome you to a new open access journal, Bioengineering, which represents a scope that fits squarely with the core expertise and growing ambitions and interests of bioengineers globally. Of particular interest are the transdisciplinary and translational research represented by the activities within centers and institutes where the biological sciences and engineering disciplines cohabit seamlessly for a focus on solutions to global challenges in human, veterinary and ecological health, bioenergy, bioprocess and sustainability. Bioengineering emphasizes the publication of novel and high quality peer reviewed articles via an open access platform. The scope includes: [...

  6. Balanceret Open Access er nøglen for samfundsvidenskab

    DEFF Research Database (Denmark)

    Møllgaard, Peter

    2016-01-01

    Danmark bør overveje at korrigere Open Access-måltallet, da fagområdernes forskellige embargoperioder gør det svært at nå målene. Det mener Peter Møllgaard, forskningsdekan på CBS.......Danmark bør overveje at korrigere Open Access-måltallet, da fagområdernes forskellige embargoperioder gør det svært at nå målene. Det mener Peter Møllgaard, forskningsdekan på CBS....

  7. Integration of open access literature into the RCSB Protein Data Bank using BioLit

    Directory of Open Access Journals (Sweden)

    Bourne Philip E

    2010-04-01

    Full Text Available Abstract Background Biological data have traditionally been stored and made publicly available through a variety of on-line databases, whereas biological knowledge has traditionally been found in the printed literature. With journals now on-line and providing an increasing amount of open access content, often free of copyright restriction, this distinction between database and literature is blurring. To exploit this opportunity we present the integration of open access literature with the RCSB Protein Data Bank (PDB. Results BioLit provides an enhanced view of articles with markup of semantic data and links to biological databases, based on the content of the article. For example, words matching to existing biological ontologies are highlighted and database identifiers are linked to their database of origin. Among other functions, it identifies PDB IDs that are mentioned in the open access literature, by parsing the full text for all research articles in PubMed Central (PMC and exposing the results as simple XML Web Services. Here, we integrate BioLit results with the RCSB PDB website by using these services to find PDB IDs that are mentioned in research articles and subsequently retrieving abstract, figures, and text excerpts for those articles. A new RCSB PDB literature view permits browsing through the figures and abstracts of the articles that mention a given structure. The BioLit Web Services that are providing the underlying data are publicly accessible. A client library is provided that supports querying these services (Java. Conclusions The integration between literature and websites, as demonstrated here with the RCSB PDB, provides a broader view for how a given structure has been analyzed and used. This approach detects the mention of a PDB structure even if it is not formally cited in the paper. Other structures related through the same literature references can also be identified, possibly providing new scientific insight. To our

  8. Download - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open...e data #4-10 in a single table. # Data name File Simple search and download 14 CEL file attachments Open-tgg... SEF URLs by Artio About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - Open TG-GATEs | LSDB Archive ...

  9. Excellence, Equity, and Access: Educators' Perceptions of Students in Open Access Advanced Placement Courses

    Science.gov (United States)

    King, Justyna Plichta

    2010-01-01

    This dissertation examines educators' perceptions regarding open access Advanced Placement (AP) program courses and their impact on non-traditional AP students in one suburban school district. The data were collected during the 2009-2010 school year through a 15-item Likert scale (and one open-ended item) survey which was disseminated during…

  10. Excellence, Equity, and Access: Educators' Perceptions of Students in Open Access Advanced Placement Courses

    Science.gov (United States)

    King, Justyna Plichta

    2010-01-01

    This dissertation examines educators' perceptions regarding open access Advanced Placement (AP) program courses and their impact on non-traditional AP students in one suburban school district. The data were collected during the 2009-2010 school year through a 15-item Likert scale (and one open-ended item) survey which was disseminated during…

  11. Access数据库的安全性分析与策略%Access Database Security Analysis and Strategy

    Institute of Scientific and Technical Information of China (English)

    文小林

    2013-01-01

    Access是Microsoft公司在1994年发布的数据库管理系统,是一种功能强大的MIS系统开放工具。它具有界面友好、操作简单等优点,在中小型数据库应用系统开发方面应用比较广泛。随着Access数据库的广泛应用,其安全性非常重要,数据库安全性问题成为了信息安全的最大挑战。在网络环境下,Access数据库存在许多的安全漏洞,修补安全漏洞保证Access数据库系统的安全性成为了数据库安全研究的重要课题之一。该文对Access数据库进行了简介,描述了数据库安全定义及安全体系,主要针对Access数据库存在的安全性问题进行分析,提出了Access数据库安全性问题的解决策略,寄希望于对提高Access数据库的安全性有所裨益。%Access is Microsoft Corporation in the 1994 release of the database management system, is a powerful tool for MIS sys-tems open. It has a friendly interface, simple operation, etc., in the development of small and medium sized database applications used widely. With the extensive application of the Access database, its security is very important, database security issues of infor-mation security has become the biggest challenge. In the network environment, Access database there are many security vulnera-bilities, security patches Access database system to ensure the security of database security has become one of the important issues. In this paper, a brief introduction Access database, describing the definition of database security and safety systems, mainly for the Access database security issues exist to analyze proposed Access database security problems solving strategies, hopes to improve the security of Access database benefit.

  12. The Role of Open Access and Open Educational Resources: A Distance Learning Perspective

    Science.gov (United States)

    Hatzipanagos, Stylianos; Gregson, Jon

    2015-01-01

    The paper explores the role of Open Access (in licensing, publishing and sharing research data) and Open Educational Resources within Distance Education, with a focus on the context of the University of London International Programmes. We report on a case study where data were gathered from librarians and programme directors relating to existing…

  13. OpenTrials: towards a collaborative open database of all available information on all clinical trials.

    Science.gov (United States)

    Goldacre, Ben; Gray, Jonathan

    2016-04-08

    OpenTrials is a collaborative and open database for all available structured data and documents on all clinical trials, threaded together by individual trial. With a versatile and expandable data schema, it is initially designed to host and match the following documents and data for each trial: registry entries; links, abstracts, or texts of academic journal papers; portions of regulatory documents describing individual trials; structured data on methods and results extracted by systematic reviewers or other researchers; clinical study reports; and additional documents such as blank consent forms, blank case report forms, and protocols. The intention is to create an open, freely re-usable index of all such information and to increase discoverability, facilitate research, identify inconsistent data, enable audits on the availability and completeness of this information, support advocacy for better data and drive up standards around open data in evidence-based medicine. The project has phase I funding. This will allow us to create a practical data schema and populate the database initially through web-scraping, basic record linkage techniques, crowd-sourced curation around selected drug areas, and import of existing sources of structured and documents. It will also allow us to create user-friendly web interfaces onto the data and conduct user engagement workshops to optimise the database and interface designs. Where other projects have set out to manually and perfectly curate a narrow range of information on a smaller number of trials, we aim to use a broader range of techniques and attempt to match a very large quantity of information on all trials. We are currently seeking feedback and additional sources of structured data.

  14. Evolution of Nursing Science: Is Open Access the Answer?

    Science.gov (United States)

    Clarke, Pamela N; Garcia, Jenny

    2015-10-01

    The open access movement where journal content is made freely available over the Internet is purported to increase scientific exchange, yet has pros and cons. There are issues related to quality that need to be examined in relation to evolution of nursing science. © The Author(s) 2015.

  15. Open Access Initiatives in Africa--Structure, Incentives and Disincentives

    Science.gov (United States)

    Nwagwu, Williams E.

    2013-01-01

    Building open access in Africa is imperative not only for African scholars and researchers doing scientific research but also for the expansion of the global science and technology knowledgebase. This paper examines the structure of homegrown initiatives, and observes very low level of awareness prevailing in the higher educational institutions…

  16. A Review of Open Access Self-Archiving Mandate Policies

    Science.gov (United States)

    Xia, Jingfeng; Gilchrist, Sarah B.; Smith, Nathaniel X. P.; Kingery, Justin A.; Radecki, Jennifer R.; Wilhelm, Marcia L.; Harrison, Keith C.; Ashby, Michael L.; Mahn, Alyson J.

    2012-01-01

    This article reviews the history of open access (OA) policies and examines the current status of mandate policy implementations. It finds that hundreds of policies have been proposed and adopted at various organizational levels and many of them have shown a positive effect on the rate of repository content accumulation. However, it also detects…

  17. Positioning Open Access Journals in a LIS Journal Ranking

    Science.gov (United States)

    Xia, Jingfeng

    2012-01-01

    This research uses the h-index to rank the quality of library and information science journals between 2004 and 2008. Selected open access (OA) journals are included in the ranking to assess current OA development in support of scholarly communication. It is found that OA journals have gained momentum supporting high-quality research and…

  18. Community College Selective Enrollment and the Challenge to Open Access

    Science.gov (United States)

    Morris, David Brian

    2012-01-01

    The open access mission is central to the community college role and mission in higher education. Although initially implemented by four-year colleges and universities, adoption of formal enrollment management initiatives in community colleges is on the increase. Admission, matriculation, retention, and persistence are affected by enrollment…

  19. Higher Education as an Open-Access Discipline

    Science.gov (United States)

    Harland, Tony

    2012-01-01

    In this article, I draw mainly on an analysis of my research experiences in science and higher education. My aim is to construct a conceptual argument that will help explain some of the evident complexity of the higher education field and inform future developments. I propose that the study of higher education is an open-access discipline with the…

  20. Characteristics of Open Access Journals in Six Subject Areas

    Science.gov (United States)

    Walters, William H.; Linvill, Anne C.

    2011-01-01

    We examine the characteristics of 663 Open Access (OA) journals in biology, computer science, economics, history, medicine, and psychology, then compare the OA journals with impact factors to comparable subscription journals. There is great variation in the size of OA journals; the largest publishes more than 2,700 articles per year, but half…

  1. Positioning Open Access Journals in a LIS Journal Ranking

    Science.gov (United States)

    Xia, Jingfeng

    2012-01-01

    This research uses the h-index to rank the quality of library and information science journals between 2004 and 2008. Selected open access (OA) journals are included in the ranking to assess current OA development in support of scholarly communication. It is found that OA journals have gained momentum supporting high-quality research and…

  2. Characteristics of Open Access Journals in Six Subject Areas

    Science.gov (United States)

    Walters, William H.; Linvill, Anne C.

    2011-01-01

    We examine the characteristics of 663 Open Access (OA) journals in biology, computer science, economics, history, medicine, and psychology, then compare the OA journals with impact factors to comparable subscription journals. There is great variation in the size of OA journals; the largest publishes more than 2,700 articles per year, but half…

  3. Higher Education as an Open-Access Discipline

    Science.gov (United States)

    Harland, Tony

    2012-01-01

    In this article, I draw mainly on an analysis of my research experiences in science and higher education. My aim is to construct a conceptual argument that will help explain some of the evident complexity of the higher education field and inform future developments. I propose that the study of higher education is an open-access discipline with the…

  4. A Review of Open Access Self-Archiving Mandate Policies

    Science.gov (United States)

    Xia, Jingfeng; Gilchrist, Sarah B.; Smith, Nathaniel X. P.; Kingery, Justin A.; Radecki, Jennifer R.; Wilhelm, Marcia L.; Harrison, Keith C.; Ashby, Michael L.; Mahn, Alyson J.

    2012-01-01

    This article reviews the history of open access (OA) policies and examines the current status of mandate policy implementations. It finds that hundreds of policies have been proposed and adopted at various organizational levels and many of them have shown a positive effect on the rate of repository content accumulation. However, it also detects…

  5. Open Access Publishing Trend Analysis: Statistics beyond the Perception

    Science.gov (United States)

    Poltronieri, Elisabetta; Bravo, Elena; Curti, Moreno; Maurizio Ferri,; Mancini, Cristina

    2016-01-01

    Introduction: The purpose of this analysis was twofold: to track the number of open access journals acquiring impact factor, and to investigate the distribution of subject categories pertaining to these journals. As a case study, journals in which the researchers of the National Institute of Health (Istituto Superiore di Sanità) in Italy have…

  6. University Supports for Open Access: A Canadian National Survey

    Science.gov (United States)

    Greyson, Devon; Vezina, Kumiko; Morrison, Heather; Taylor, Donald; Black, Charlyn

    2009-01-01

    The advent of policies at research-funding organizations requiring grantees to make their funded research openly accessible alters the life cycle of scholarly research. This survey-based study explores the approaches that libraries and research administration offices at the major Canadian universities are employing to support the…

  7. Community College Selective Enrollment and the Challenge to Open Access

    Science.gov (United States)

    Morris, David Brian

    2012-01-01

    The open access mission is central to the community college role and mission in higher education. Although initially implemented by four-year colleges and universities, adoption of formal enrollment management initiatives in community colleges is on the increase. Admission, matriculation, retention, and persistence are affected by enrollment…

  8. Open Access Initiatives in Africa--Structure, Incentives and Disincentives

    Science.gov (United States)

    Nwagwu, Williams E.

    2013-01-01

    Building open access in Africa is imperative not only for African scholars and researchers doing scientific research but also for the expansion of the global science and technology knowledgebase. This paper examines the structure of homegrown initiatives, and observes very low level of awareness prevailing in the higher educational institutions…

  9. CEL file attributes - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open... by Artio About This Database Database Description Download License Update History of This Database Site Policy | Contact Us CEL file attributes - Open TG-GATEs | LSDB Archive ...

  10. Open-access clinical trial registries: the Italian scenario

    Directory of Open Access Journals (Sweden)

    Mosconi Paola

    2012-10-01

    Full Text Available Abstract Background Citizens, patients and their representatives are increasingly insisting on working with health professionals to organize and discuss research protocols. The International Committee of Medical Journal Editors recommended setting up a public clinical trial registry where anyone can find key information about a trial. Around the world, governments have, in fact, now begun to legislate mandatory disclosure of all clinical trials. The aims of the present survey were to assess the availability of clinical trial registries for Italian citizens and to examine the transparency of the data items reported. Methods The availability of open-access clinical trial registries was surveyed on a sample of 182 websites, including research institutes and centers of excellence (IRCCS-teaching hospitals, hospitals and associations. For each registry we downloaded a sample of two trials to assess the correspondence of the data items reported. Results from the Italian and international registries were compared. Results Fifteen percent of the sample had an open-access registry of clinical trials. Comparison of the data items available, in terms of completeness and transparency, from institutional and international registries indicated wide variability. Conclusions Italian citizens, patients and their associations have scant access to local registries of clinical trials, and international registries are generally more informative. On the European level, advocacy and lobby actions are needed among citizens and patients to boost the diffusion of open-access clinical trial registries without language barriers, thereby facilitating participation, access to information, and the coordination of clinical research.

  11. Virtual Hubs for facilitating access to Open Data

    Science.gov (United States)

    Mazzetti, Paolo; Latre, Miguel Á.; Ernst, Julia; Brumana, Raffaella; Brauman, Stefan; Nativi, Stefano

    2015-04-01

    In October 2014 the ENERGIC-OD (European NEtwork for Redistributing Geospatial Information to user Communities - Open Data) project, funded by the European Union under the Competitiveness and Innovation framework Programme (CIP), has started. In response to the EU call, the general objective of the project is to "facilitate the use of open (freely available) geographic data from different sources for the creation of innovative applications and services through the creation of Virtual Hubs". In ENERGIC-OD, Virtual Hubs are conceived as information systems supporting the full life cycle of Open Data: publishing, discovery and access. They facilitate the use of Open Data by lowering and possibly removing the main barriers which hampers geo-information (GI) usage by end-users and application developers. Data and data services heterogeneity is recognized as one of the major barriers to Open Data (re-)use. It imposes end-users and developers to spend a lot of effort in accessing different infrastructures and harmonizing datasets. Such heterogeneity cannot be completely removed through the adoption of standard specifications for service interfaces, metadata and data models, since different infrastructures adopt different standards to answer to specific challenges and to address specific use-cases. Thus, beyond a certain extent, heterogeneity is irreducible especially in interdisciplinary contexts. ENERGIC-OD Virtual Hubs address heterogeneity adopting a mediation and brokering approach: specific components (brokers) are dedicated to harmonize service interfaces, metadata and data models, enabling seamless discovery and access to heterogeneous infrastructures and datasets. As an innovation project, ENERGIC-OD will integrate several existing technologies to implement Virtual Hubs as single points of access to geospatial datasets provided by new or existing platforms and infrastructures, including INSPIRE-compliant systems and Copernicus services. ENERGIC OD will deploy a

  12. Open Access to Research Articles and Data: Library Roles

    Science.gov (United States)

    Joseph, Heather

    2015-08-01

    Over the past decade, a handful of key developments have caused scholars and researchers to rethink not only the way they conduct their work, but also the way in which they communicate it to others. The advent of the Internet has provided unprecedented opportunities for immediate, cost effective global connectivity, opening up new possibilities for collaboration and communication. This has resulted in scholarship increasingly being conducted in the online environment, and a vast amount of new digital information being generated and made widely available to those interested in using it. Additionally, the Internet is a dynamic environment, with new channels for producing and sharing information in a myriad of formats emerging frequently.In higher education, the momentum of the burgeoning movement towards "open" sharing of information of all kinds continues to gain traction. In particular, advancements in the areas of opening up access to articles and reserch data are increasingly visible. In both of these areas, academic and research libraries are playing important, central roles in promoting the awareness of the potential costs and benefits of a more open research environment, as well as defining new roles for libraries in this digital environment.As this push for grater openness continues, these fronts are intersecting in interesting and potentially transformative ways. The Open Access and Open Data movements share fundamental philosophical commonalities that make collaboration a natural outcome. Both movements place a premium on reducing barriers to discovering and accessing pertinent digital information. Perhaps even more significantly, both explicitly recognize that enabling productive use of digital information is key to unlocking its full value. As a result of these shared priorities, there are a wide variety of common strategies that libraries can take to help advance research, presenting new opportunities for deeper collaboration to take place.This talk will

  13. Ethics of open access to biomedical research: Just a special case of ethics of open access to research

    Directory of Open Access Journals (Sweden)

    Harnad Stevan

    2007-12-01

    Full Text Available Abstract The ethical case for Open Access (OA (free online access to research findings is especially salient when it is public health that is being compromised by needless access restrictions. But the ethical imperative for OA is far more general: It applies to all scientific and scholarly research findings published in peer-reviewed journals. And peer-to-peer access is far more important than direct public access. Most research is funded so as to be conducted and published, by researchers, in order to be taken up, used, and built upon in further research and applications, again by researchers (pure and applied, including practitioners, for the benefit of the public that funded it – not in order to generate revenue for the peer-reviewed journal publishing industry (nor even because there is a burning public desire to read much of it. Hence OA needs to be mandated, by researchers' institutions and funders, for all research.

  14. Ethics of open access to biomedical research: just a special case of ethics of open access to research.

    Science.gov (United States)

    Harnad, Stevan

    2007-12-07

    The ethical case for Open Access (OA) (free online access) to research findings is especially salient when it is public health that is being compromised by needless access restrictions. But the ethical imperative for OA is far more general: It applies to all scientific and scholarly research findings published in peer-reviewed journals. And peer-to-peer access is far more important than direct public access. Most research is funded so as to be conducted and published, by researchers, in order to be taken up, used, and built upon in further research and applications, again by researchers (pure and applied, including practitioners), for the benefit of the public that funded it - not in order to generate revenue for the peer-reviewed journal publishing industry (nor even because there is a burning public desire to read much of it). Hence OA needs to be mandated, by researchers' institutions and funders, for all research.

  15. Education Scholars' Perceptions and Practices toward Open Access Publishing

    Science.gov (United States)

    Ellingford, Lori Michelle

    2012-01-01

    Although open access publishing has been available since 1998, we know little regarding scholars' perceptions and practices toward publishing in open access outlets, especially in the social science community. Open access publishing has been slow to penetrate the field of education, yet the potential impact of open access could make this…

  16. 50 CFR 660.320 - Open access fishery-crossover provisions.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-crossover provisions... West Coast Groundfish-Open Access Fisheries § 660.320 Open access fishery—crossover provisions. (a) Operating in both limited entry and open access fisheries. See provisions at § 660.60, subpart C....

  17. Education Scholars' Perceptions and Practices toward Open Access Publishing

    Science.gov (United States)

    Ellingford, Lori Michelle

    2012-01-01

    Although open access publishing has been available since 1998, we know little regarding scholars' perceptions and practices toward publishing in open access outlets, especially in the social science community. Open access publishing has been slow to penetrate the field of education, yet the potential impact of open access could make this…

  18. 50 CFR 660.330 - Open access fishery-management measures.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-management measures... West Coast Groundfish-Open Access Fisheries § 660.330 Open access fishery—management measures. (a) General. Groundfish species taken in open access fisheries will be managed with cumulative trip...

  19. 50 CFR 660.313 - Open access fishery-recordkeeping and reporting.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-recordkeeping and... West Coast Groundfish-Open Access Fisheries § 660.313 Open access fishery—recordkeeping and reporting... to open access fisheries. (b) Declaration reports for vessels using nontrawl gear....

  20. 50 CFR 660.333 - Open access non-groundfish trawl fishery-management measures.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access non-groundfish trawl fishery... COAST STATES West Coast Groundfish-Open Access Fisheries § 660.333 Open access non-groundfish trawl... the open access trip limit table, Table 3 (South) of this subpart. Trip limits for groundfish...

  1. 50 CFR 660.319 - Open access fishery gear identification and marking.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery gear identification... COAST STATES West Coast Groundfish-Open Access Fisheries § 660.319 Open access fishery gear identification and marking. (a) Gear identification. (1) Open access fixed gear (longline, trap or pot, set...

  2. A review of accessibility of administrative healthcare databases in the Asia-Pacific region

    Science.gov (United States)

    Milea, Dominique; Azmi, Soraya; Reginald, Praveen; Verpillat, Patrice; Francois, Clement

    2015-01-01

    Objective We describe and compare the availability and accessibility of administrative healthcare databases (AHDB) in several Asia-Pacific countries: Australia, Japan, South Korea, Taiwan, Singapore, China, Thailand, and Malaysia. Methods The study included hospital records, reimbursement databases, prescription databases, and data linkages. Databases were first identified through PubMed, Google Scholar, and the ISPOR database register. Database custodians were contacted. Six criteria were used to assess the databases and provided the basis for a tool to categorise databases into seven levels ranging from least accessible (Level 1) to most accessible (Level 7). We also categorised overall data accessibility for each country as high, medium, or low based on accessibility of databases as well as the number of academic articles published using the databases. Results Fifty-four administrative databases were identified. Only a limited number of databases allowed access to raw data and were at Level 7 [Medical Data Vision EBM Provider, Japan Medical Data Centre (JMDC) Claims database and Nihon-Chouzai Pharmacy Claims database in Japan, and Medicare, Pharmaceutical Benefits Scheme (PBS), Centre for Health Record Linkage (CHeReL), HealthLinQ, Victorian Data Linkages (VDL), SA-NT DataLink in Australia]. At Levels 3–6 were several databases from Japan [Hamamatsu Medical University Database, Medi-Trend, Nihon University School of Medicine Clinical Data Warehouse (NUSM)], Australia [Western Australia Data Linkage (WADL)], Taiwan [National Health Insurance Research Database (NHIRD)], South Korea [Health Insurance Review and Assessment Service (HIRA)], and Malaysia [United Nations University (UNU)-Casemix]. Countries were categorised as having a high level of data accessibility (Australia, Taiwan, and Japan), medium level of accessibility (South Korea), or a low level of accessibility (Thailand, China, Malaysia, and Singapore). In some countries, data may be available but

  3. A review of accessibility of administrative healthcare databases in the Asia-Pacific region.

    Science.gov (United States)

    Milea, Dominique; Azmi, Soraya; Reginald, Praveen; Verpillat, Patrice; Francois, Clement

    2015-01-01

    We describe and compare the availability and accessibility of administrative healthcare databases (AHDB) in several Asia-Pacific countries: Australia, Japan, South Korea, Taiwan, Singapore, China, Thailand, and Malaysia. The study included hospital records, reimbursement databases, prescription databases, and data linkages. Databases were first identified through PubMed, Google Scholar, and the ISPOR database register. Database custodians were contacted. Six criteria were used to assess the databases and provided the basis for a tool to categorise databases into seven levels ranging from least accessible (Level 1) to most accessible (Level 7). We also categorised overall data accessibility for each country as high, medium, or low based on accessibility of databases as well as the number of academic articles published using the databases. Fifty-four administrative databases were identified. Only a limited number of databases allowed access to raw data and were at Level 7 [Medical Data Vision EBM Provider, Japan Medical Data Centre (JMDC) Claims database and Nihon-Chouzai Pharmacy Claims database in Japan, and Medicare, Pharmaceutical Benefits Scheme (PBS), Centre for Health Record Linkage (CHeReL), HealthLinQ, Victorian Data Linkages (VDL), SA-NT DataLink in Australia]. At Levels 3-6 were several databases from Japan [Hamamatsu Medical University Database, Medi-Trend, Nihon University School of Medicine Clinical Data Warehouse (NUSM)], Australia [Western Australia Data Linkage (WADL)], Taiwan [National Health Insurance Research Database (NHIRD)], South Korea [Health Insurance Review and Assessment Service (HIRA)], and Malaysia [United Nations University (UNU)-Casemix]. Countries were categorised as having a high level of data accessibility (Australia, Taiwan, and Japan), medium level of accessibility (South Korea), or a low level of accessibility (Thailand, China, Malaysia, and Singapore). In some countries, data may be available but accessibility was restricted

  4. Biochemistry - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...y.zip File URL: ftp://ftp.biosciencedbc.jp/archive/open-tggates/LATEST/open_tggat...e Database Description Download License Update History of This Database Site Policy | Contact Us Biochemistry - Open TG-GATEs | LSDB Archive ...

  5. First results of the SOAP project. Open access publishing in 2010

    CERN Document Server

    Dallmeier-Tiessen, Suenje; Goerner, Bettina; Hyppoelae, Jenni; Igo-Kemenes, Peter; Kahn, Deborah; Lambert, Simon; Lengenfelder, Anja; Leonard, Chris; Mele, Salvatore; Polydoratou, Panayiota; Ross, David; Ruiz-Perez, Sergio; Schimmer, Ralf; Swaisland, Mark; van der Stelt, Wim

    2010-01-01

    The SOAP (Study of Open Access Publishing) project has compiled data on the present offer for open access publishing in online peer-reviewed journals. Starting from the Directory of Open Access Journals, several sources of data are considered, including inspection of journal web site and direct inquiries within the publishing industry. Several results are derived and discussed, together with their correlations: the number of open access journals and articles; their subject area; the starting date of open access journals; the size and business models of open access publishers; the licensing models; the presence of an impact factor; the uptake of hybrid open access.

  6. Open access policy at Reviews in Health Care

    Directory of Open Access Journals (Sweden)

    Silvia Maina

    2011-07-01

    Full Text Available [The abstract of this article is not available. Here are the first sentence of the interview with Peter Suber. The complete interview is freely available upon registration]Peter Suber (http://bit.ly/suber is Berkman Fellow at Harvard University, Senior Researcher at SPARC, the Open Access Project Director at Public Knowledge, and Research Professor of Philosophy at Earlham College. He conducts research, writing, consulting, and advocacy on open access and related topics.Q: The aim of open access is to remove access barriers to publication. Don’t you think that fee-based model can be an obstacle for authors in less-developed countries?A: Fee-based OA journals don’t work as well as no-fee OA journals in fields and countries where most research is unfunded. But it’s important to remember that the vast majority of OA journals (70% charge no publication fees at all. The percentage is even higher for OA journals published in developing countries. For example, nearly all the OA journals published in India are no-fee. It’s equally important to remember that green OA, or OA through repositories, is an inexpensive alternative to gold OA, or OA through journals.

  7. Open Access and Authors’ Rights Management: A Possibility for Theology?

    Directory of Open Access Journals (Sweden)

    Kevin L. Smith

    2009-05-01

    Full Text Available Several academic disciplines have begun to understand the benefits of open access to scholarship, both for scholars and for the general public. Scientific disciplines have led the way, partially due to the nature of scholarship in those areas and partially because they have felt the crisis in serials pricing more acutely than others. Theological studies, however, have largely been insulated from the push for open access; considering the reasons for that is the first task of this article. It is also the case, however, that the missionary impulse that stands behind much theological scholarship is a strong incentive to embrace the opportunities afforded by digital, online dissemination of research and writing. After discussing this imperative for global distribution, the bulk of the article focuses on how theological institutions, and especially their libraries, can encourage and support scholars in making their work freely accessible. Copyright issues, including the elements of a successful copyright management program, are discussed, as are some of the technological elements necessary for an efficient and discoverable open access repository. Options for licensing, both at ingestion of content and at dissemination to users are also considered. Finally, it is argued that the role of consortia and professional organizations in supporting these initiatives is especially important because of the relatively small size of so many theological institutions.

  8. Open Access: there is something you can do…

    CERN Multimedia

    Jens Vigen

    2014-01-01

    Since the very beginning, CERN has put a lot of emphasis on the fact that its scientific output should be accessible to everyone. Today, on average, around 10% of articles are published Open Access worldwide. However, that figure is much lower when the proceedings of conferences, including those held at CERN, are taken into account.   The CERN Convention reads: “…and the results of its experimental and theoretical work shall be published or otherwise made generally available”. There is little doubt that if this had been written today, it would have explicitly mentioned that our results should be published Open Access. This is indeed what has happened as CERN has moved into the LHC era: a little known fact is that all LHC physics results have been published Open Access and can be read in their final form by anybody with an Internet connection. Most importantly, this information can be re-used thanks to Creative Commons licenses, which is not the case for conventional...

  9. DABAM: an open-source database of X-ray mirrors metrology.

    Science.gov (United States)

    Sanchez Del Rio, Manuel; Bianchi, Davide; Cocco, Daniele; Glass, Mark; Idir, Mourad; Metz, Jim; Raimondi, Lorenzo; Rebuffi, Luca; Reininger, Ruben; Shi, Xianbo; Siewert, Frank; Spielmann-Jaeggi, Sibylle; Takacs, Peter; Tomasset, Muriel; Tonnessen, Tom; Vivo, Amparo; Yashchuk, Valeriy

    2016-05-01

    An open-source database containing metrology data for X-ray mirrors is presented. It makes available metrology data (mirror heights and slopes profiles) that can be used with simulation tools for calculating the effects of optical surface errors in the performances of an optical instrument, such as a synchrotron beamline. A typical case is the degradation of the intensity profile at the focal position in a beamline due to mirror surface errors. This database for metrology (DABAM) aims to provide to the users of simulation tools the data of real mirrors. The data included in the database are described in this paper, with details of how the mirror parameters are stored. An accompanying software is provided to allow simple access and processing of these data, calculate the most usual statistical parameters, and also include the option of creating input files for most used simulation codes. Some optics simulations are presented and discussed to illustrate the real use of the profiles from the database.

  10. DABAM: an open-source database of X-ray mirrors metrology

    Science.gov (United States)

    Sanchez del Rio, Manuel; Bianchi, Davide; Cocco, Daniele; Glass, Mark; Idir, Mourad; Metz, Jim; Raimondi, Lorenzo; Rebuffi, Luca; Reininger, Ruben; Shi, Xianbo; Siewert, Frank; Spielmann-Jaeggi, Sibylle; Takacs, Peter; Tomasset, Muriel; Tonnessen, Tom; Vivo, Amparo; Yashchuk, Valeriy

    2016-01-01

    An open-source database containing metrology data for X-ray mirrors is presented. It makes available metrology data (mirror heights and slopes profiles) that can be used with simulation tools for calculating the effects of optical surface errors in the performances of an optical instrument, such as a synchrotron beamline. A typical case is the degradation of the intensity profile at the focal position in a beamline due to mirror surface errors. This database for metrology (DABAM) aims to provide to the users of simulation tools the data of real mirrors. The data included in the database are described in this paper, with details of how the mirror parameters are stored. An accompanying software is provided to allow simple access and processing of these data, calculate the most usual statistical parameters, and also include the option of creating input files for most used simulation codes. Some optics simulations are presented and discussed to illustrate the real use of the profiles from the database. PMID:27140145

  11. DABAM: an open-source database of X-ray mirrors metrology

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez del Rio, Manuel; Bianchi, Davide; Cocco, Daniele; Glass, Mark; Idir, Mourad; Metz, Jim; Raimondi, Lorenzo; Rebuffi, Luca; Reininger, Ruben; Shi, Xianbo; Siewert, Frank; Spielmann-Jaeggi, Sibylle; Takacs, Peter; Tomasset, Muriel; Tonnessen, Tom; Vivo, Amparo; Yashchuk, Valeriy

    2016-04-20

    An open-source database containing metrology data for X-ray mirrors is presented. It makes available metrology data (mirror heights and slopes profiles) that can be used with simulation tools for calculating the effects of optical surface errors in the performances of an optical instrument, such as a synchrotron beamline. A typical case is the degradation of the intensity profile at the focal position in a beamline due to mirror surface errors. This database for metrology (DABAM) aims to provide to the users of simulation tools the data of real mirrors. The data included in the database are described in this paper, with details of how the mirror parameters are stored. An accompanying software is provided to allow simple access and processing of these data, calculate the most usual statistical parameters, and also include the option of creating input files for most used simulation codes. Some optics simulations are presented and discussed to illustrate the real use of the profiles from the database.

  12. Editorial. SCIRES-IT, an Open-Access Journal Eco-sustainable

    Directory of Open Access Journals (Sweden)

    Virginia Valzano

    2014-04-01

    Full Text Available SCIRES-IT (SCIentific RESearch and Information Technology - Ricerca Scientifica e Tecnologie dell'Informazione is an eco-sustainable Open Access journal providing an international forum for the exchange and sharing of know-how in the areas of Digitalization and Multimedia Technologies and Information & Communication Technology (ICT in support of Cultural and environmental Heritage (CH documentation, preservation and fruition. It is a peer-reviewed journal, covered by various indexing and abstracting databases and available online on a semi-annual basis. SCIRES-IT was founded in 2011 by CASPUR-CIBER, under the editorial project “Open Access publications eco-sustainable” for the development of open access publishing and for the preservation and restoration of the natural environment. It puts together the main principles of the Berlin Declaration on Open Access with the aims International Convention on Biological Diversity, fostering the scientific dissemination, the biodiversity awareness, the enviroment preservation, and the sustainable use of natural resources. For each publication, an action of environmental restoration will be made in protected areas by planting local ecotypes of native species.

  13. Open access of evidence-based publications: the case of the orthopedic and musculoskeletal literature.

    Science.gov (United States)

    Yammine, Kaissar

    2015-11-01

    The open access model, where researchers can publish their work and make it freely available to the whole medical community, is gaining ground over the traditional type of publication. However, fees are to be paid by either the authors or their institutions. The purpose of this paper is to assess the proportion and type of open access evidence-based articles in the form of systematic reviews and meta-analyses in the field of musculoskeletal disorders and orthopedic surgery. PubMed database was searched and the results showed a maximal number of hits for low back pain and total hip arthroplasty. We demonstrated that despite a 10-fold increase in the number of evidence-based publications in the past 10 years, the rate of free systematic reviews in the general biomedical literature did not change for the last two decades. In addition, the average percentage of free open access systematic reviews and meta-analyses for the commonest painful musculoskeletal conditions and orthopedic procedures was 20% and 18%, respectively. Those results were significantly lower than those of the systematic reviews and meta-analyses in the remaining biomedical research. Such findings could indicate a divergence between the efforts engaged at promoting evidence-based principles and those at disseminating evidence-based findings in the field of musculoskeletal disease and trauma. The high processing fee is thought to be a major limitation when considering open access model for publication.

  14. Operating a transmission company under open access: The basic requirements

    Energy Technology Data Exchange (ETDEWEB)

    Hunt, S.; Shuttleworth, G.

    1993-03-01

    In both Europe and North America, technical and legal changes are increasing the opportunities for electricity traders to use transmission lines and grids that are owned by other companies. This article discusses the view that transmission maybe a service potentially separable from the production and retailing of electricity, and that transmission should be freely available at an appropriate price. Grid operators are wary of proposals to open access to transmission. European legislators want grid operators to become Transmission System Operators (TSO), moving energy around the network for others. Also discussed in this article are the powers that the TSO should be allowed to exercise if access to transmission is made available.

  15. Teaching Case: Adapting the Access Northwind Database to Support a Database Course

    Science.gov (United States)

    Dyer, John N.; Rogers, Camille

    2015-01-01

    A common problem encountered when teaching database courses is that few large illustrative databases exist to support teaching and learning. Most database textbooks have small "toy" databases that are chapter objective specific, and thus do not support application over the complete domain of design, implementation and management concepts…

  16. Evaluation of an Online Instructional Database Accessed by QR Codes to Support Biochemistry Practical Laboratory Classes

    Science.gov (United States)

    Yip, Tor; Melling, Louise; Shaw, Kirsty J.

    2016-01-01

    An online instructional database containing information on commonly used pieces of laboratory equipment was created. In order to make the database highly accessible and to promote its use, QR codes were utilized. The instructional materials were available anytime and accessed using QR codes located on the equipment itself and within undergraduate…

  17. Montreal Archive of Sleep Studies: an open-access resource for instrument benchmarking and exploratory research.

    Science.gov (United States)

    O'Reilly, Christian; Gosselin, Nadia; Carrier, Julie; Nielsen, Tore

    2014-12-01

    Manual processing of sleep recordings is extremely time-consuming. Efforts to automate this process have shown promising results, but automatic systems are generally evaluated on private databases, not allowing accurate cross-validation with other systems. In lacking a common benchmark, the relative performances of different systems are not compared easily and advances are compromised. To address this fundamental methodological impediment to sleep study, we propose an open-access database of polysomnographic biosignals. To build this database, whole-night recordings from 200 participants [97 males (aged 42.9 ± 19.8 years) and 103 females (aged 38.3 ± 18.9 years); age range: 18-76 years] were pooled from eight different research protocols performed in three different hospital-based sleep laboratories. All recordings feature a sampling frequency of 256 Hz and an electroencephalography (EEG) montage of 4-20 channels plus standard electro-oculography (EOG), electromyography (EMG), electrocardiography (ECG) and respiratory signals. Access to the database can be obtained through the Montreal Archive of Sleep Studies (MASS) website (http://www.ceams-carsm.ca/en/MASS), and requires only affiliation with a research institution and prior approval by the applicant's local ethical review board. Providing the research community with access to this free and open sleep database is expected to facilitate the development and cross-validation of sleep analysis automation systems. It is also expected that such a shared resource will be a catalyst for cross-centre collaborations on difficult topics such as improving inter-rater agreement on sleep stage scoring.

  18. Use of system approaches for transmission open access pricing

    Energy Technology Data Exchange (ETDEWEB)

    Rudnick, H.; Soto, M.; Palma, R. [Pontificia University Catolica de Chile, Santiago (Chile)

    1999-02-01

    The Latin American deregulated markets have based their open access schemes on a concept that considers a multilateral use of the transmission system, with all agents contributing to the financing of a common network based on physical and economic usage, irrespective of commercial arrangements. The paper describes the concept and the existing schemes and contributes with the formulation of alternative numerical approaches for open access pricing, taking into account energy and capacity use of the system by the participant agents. Distribution factors based on DC power flows are the basic elements of the formulation, which is built based on different physical and economic considerations. The approaches are numerically evaluated in the Chilean main interconnected electrical system, with a comparison of the resultant impacts on generators and consumers. (author)

  19. The role of libraries in open access institutional repositories.

    Directory of Open Access Journals (Sweden)

    Tony Hernández Peréz

    2008-02-01

    Full Text Available Nowadays, there are more and more institutional repositories in Spain, as in a large number of countries all over the world, which contains thousands of digital objects in open access, full-text, no-charge and available to free download, print or copy. Nearly every repository is managed and mantained by the library services of the institution they serve. This article explains the reasons for the crisis in the scholarly communication model, the alternative model based on open access to scholarly publication, and the crucial role that the libraries can play in the development of their own digital collections, a challenge and a chance that they can't miss.

  20. Development of open access in China: strategies, practices, challenges

    Directory of Open Access Journals (Sweden)

    Dr Xiaolin Zhang

    2014-03-01

    Full Text Available China's rapid growth in scientific R&D in recent years provides solid evidence for the country's innovation-driven development strategy, but also puts increasing demand on open access (OA to publicly funded research results. This article looks at ways in which the Chinese government, funders, research and library communities are all rising to this challenge, and at future challenges still to be met. As a major scientific publishing country with its estimated 5,000 STM journals, China's place in the international OA publishing scene is considered in detail, with the author concluding that he believes open access to publicly funded research in China will soon become the accepted norm, as all levels of scientific policymakers fulfil their political, professional and international responsibilities, to the benefit of Chinese research and society.

  1. 2015 Relaunch as Open Access Pediatric Neurology Briefs

    Directory of Open Access Journals (Sweden)

    John J Millichap

    2015-01-01

    Full Text Available Pediatric Neurology Briefs (PNB has been published monthly since 1987 as a continuing education service designed to expedite and facilitate review of current medical literature concerning pediatric neurology. In 2015, PNB is relaunched as an open access, peer-reviewed, journal with an expanded editorial board.  PNB has a new website and content management system capable of organizing peer-review and providing improved indexing, DOI assignment, and online full-text article view.  Digitization of back issues, archiving, and inclusion in PubMed are future goals.  The new online open access PNB aims to reach more physicians, researchers, and other healthcare providers with highlights of the latest advances in pediatric neurology and commentaries by specialists in the field.

  2. 2015 Relaunch as Open Access Pediatric Neurology Briefs.

    Science.gov (United States)

    Millichap, John J; Millichap, J Gordon

    2015-01-01

    Pediatric Neurology Briefs (PNB) has been published monthly since 1987 as a continuing education service designed to expedite and facilitate review of current medical literature concerning pediatric neurology. In 2015, PNB is relaunched as an open access, peer-reviewed, journal with an expanded editorial board. PNB has a new website and content management system capable of organizing peer-review and providing improved indexing, DOI assignment, and online full-text article view. Digitization of back issues, archiving, and inclusion in PubMed are future goals. The new online open access PNB aims to reach more physicians, researchers, and other healthcare providers with highlights of the latest advances in pediatric neurology and commentaries by specialists in the field.

  3. The Open Access Initiative: A New Paradigm for Scholarly Communications

    Directory of Open Access Journals (Sweden)

    Kristin Yiotis

    2005-12-01

    Full Text Available This paper gives an account of the origin and development of the Open Access Initiative (OAI and the digital technology that enables its existence. The researcher explains the crisis in scholarly communications and how open access (OA can reform the present system. OA has evolved two systems for delivering research articles: OA archives or repositories and OA journals. They differ in that OA journals conduct peer review and OA archives do not. Discussion focuses on how these two delivery systems work, including such topics as OAI, local institutional repositories, Eprints self-archiving software, cross-archives searching, metadata harvesting, and the individuals who invented OA and organizations that support it.

  4. Hematology - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open...base Description Download License Update History of This Database Site Policy | Contact Us Hematology - Open TG-GATEs | LSDB Archive ...

  5. Body weight - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open...d License Update History of This Database Site Policy | Contact Us Body weight - Open TG-GATEs | LSDB Archive ...

  6. Pathological items - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open... This Database Site Policy | Contact Us Pathological items - Open TG-GATEs | LSDB Archive ...

  7. Individual list - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open... History of This Database Site Policy | Contact Us Individual list - Open TG-GATEs | LSDB Archive ...

  8. Towards the Adoption of Open Source and Open Access Electronic Health Record Systems

    Directory of Open Access Journals (Sweden)

    Ilias Maglogiannis

    2012-01-01

    Full Text Available As the Electronic Health Record (EHR systems constantly expand to support more clinical activities and their implementations in healthcare organizations become more widespread, several communities have been working intensively for several years to develop open access and open source EHR software, aiming at reducing the costs of EHR deployment and maintenance. In this paper, we describe and evaluate the most popular open source electronic medical records such as openEMR, openMRS and patientOS, providing their technical features and potentials. These systems are considered quite important due to their prevalence. The article presents the key features of each system and outlines the advantages and problems of Open Source Software (OSS Systems through a review of the literature, in order to demonstrate the possibility of their adoption in modern electronic healthcare systems. Also discussed are the future trends of OS EHRs in the context of the Personal Health Records and mobile computing paradigm.

  9. Reconciling pool and contract dispatch in open access transmission operations

    Energy Technology Data Exchange (ETDEWEB)

    David, A.K. [Hong Kong Polytechnic University, Kowloon (China). Dept. of Electrical Engineering

    1998-07-01

    The dispatch of both suppliers who bid into the pool and of bilateral and multilateral contracts between individual buyers, sellers and brokers are obligations placed on the system operator in an open transmission access environment. During periods of transmission congestion security-driven constraints impose curtailments on all types of transactions. The paper addresses the need to develop methodologies to understand and cope with this problem. (author)

  10. Editorial: Citation-Linking between Open Access Journals

    OpenAIRE

    Alireza Noruzi

    2008-01-01

    Open access (OA) journals fill a gap in the literature by establishing an online forum for discussion of empirical, theoretical and practical aspects, and policies related to their field. They facilitate scholarly communication between researchers who are investigating and working towards possible solutions. OA journals offer many advantages that scholarly print journals cannot match. One of the main advantages is the capability of reference-hyperlinking, which allows readers to jump directly...

  11. APS Editorial Q&A: APS and Open Access

    Science.gov (United States)

    2011-04-01

    The movement toward Open Access continues to gain momentum. A brief review of APS efforts in this area will be presented by APS Editor in Chief, Gene Sprouse. Editors from Physical Review C, D, Letters, and X, Physical Review Special Topics - Accelerators and Beams, Physical Review Special Topics - Physics Education Research, and Reviews of Modern Physics will address your questions about publishing in this evolving environment.

  12. Open-Access Scholarly Publishing in Economic Perspective

    OpenAIRE

    2004-01-01

    What is the prospect for migrating scholarly journals from paper to digital formats in a way that lowers university expenditures? Although many journals are published digitally, at least so far, the digital format complements paper, increasing university expenditures. Open-access publications that are free to readers and financed by publication fees paid by authors and their agents may both lower costs and allow scholarship to reach a larger audience. However, gains to universities may depend...

  13. Comparison of open-access vancomycin dosing websites.

    Science.gov (United States)

    Fewel, N P

    2017-04-01

    There are many methods for dosing vancomycin. The purpose of this commentary was to compare open-access vancomycin dosing websites with Vancomycin-Calculator.com and describe how body weight can affect their pharmacokinetic (PK) calculations. A vancomycin dosing website, Vancomycin-Calculator.com, was developed to improve the dosing practice at our health system. Nine other vancomycin dosing calculators were identified, including three open-access websites. Each website uses a different dosing method. Most of the websites calculated similar doses for patients with normal body weight. Vancomycin-Calculator.com was the only website to calculate practical doses for obese patients, and it calculated higher daily doses for underweight patients compared to other websites. Vancomycin-Calculator.com is an open-access vancomycin dosing website that was developed using the Bauer PK method. Compared with three other websites, PK calculations resulted in significant differences for underweight and obese patients. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

  14. A framework for operations in the competitive open access environment

    Energy Technology Data Exchange (ETDEWEB)

    Ilic, M.D.; Graves, F.C.; Fink, L.H.; DiCaprio, A.M.

    1996-04-01

    A pragmatic framework is available for maintaining reliable system operations in the context of an unbundled open access environment, while fostering a competitive supply/demand market. The proposed framework shows how incentives will meld a decentralized, competitive profit-driven market and a centrally directed services market together into a reliable free market. The electric power industry is in the midst of developing responses to the Federal Energy Regulatory Commission`s mandate to provide open access transmission service. The benfits and consequences of alternative financial, regulatory, and operational designs for unbundling and restructuring are being actively debated within the industry. Each alternative must meet three goals: (1) provide open access to transmission facilities; (2) create competition among generation resources; and (3) preserve system reliability. The differences among the alternatives are in details of how to meet these goals. It is a question of where and how to draw the lines between the infrastructure and the ancillary services required to support that infrastructure. Of particular note is the debate between proponents of a Poolco and the proponents of Bilateral scheduling transactions. Both schemes incorporate the use of a third-party Independent System Operator (ISO). The ISO is required to maintain system security and reliability in a non-discriminatory fashion. Much of this debate has taken place on a philosophical level, more concerned with competitive paradigms and analogies to other industries than with an informed engineering discussion. The authors try to put some practical concerns into this discussion.

  15. Making the innovation case in Open Access scholary communication

    CERN Document Server

    CERN. Geneva

    2005-01-01

    It seems almost unnecessary to have to elaborate additional reasons for the adoption of Open Access scholarly communication (OA sc) as manifested through Open Access journals and self-archiving practices. To those active within the OA arena, the case has been convincingly made, and current arguments merely need to be disseminated beyond the Library and Information Science (LIS) sphere. However, it is my contention that a convincing argument for OA sc needs to be launched from the Science Policy perspective if any government mandated pro-OA policy changes are to be effected. This paper, then, is an attempt at taking the OA discussion beyond the LIS arena and into the realm of Science and Innovation Policy. Using Innovation Theory as its theoretical framework, it is argued that Open Access scholarly communication can only serve to bolster Innovation Systems, be they national, regional, or sectoral. The case of South Africa is taken as an illustrative example, though the case can and will be generalised to beyon...

  16. Open Access Data in Polar and Cryospheric Remote Sensing

    Directory of Open Access Journals (Sweden)

    Allen Pope

    2014-07-01

    Full Text Available This paper aims to introduce the main types and sources of remotely sensed data that are freely available and have cryospheric applications. We describe aerial and satellite photography, satellite-borne visible, near-infrared and thermal infrared sensors, synthetic aperture radar, passive microwave imagers and active microwave scatterometers. We consider the availability and practical utility of archival data, dating back in some cases to the 1920s for aerial photography and the 1960s for satellite imagery, the data that are being collected today and the prospects for future data collection; in all cases, with a focus on data that are openly accessible. Derived data products are increasingly available, and we give examples of such products of particular value in polar and cryospheric research. We also discuss the availability and applicability of free and, where possible, open-source software tools for reading and processing remotely sensed data. The paper concludes with a discussion of open data access within polar and cryospheric sciences, considering trends in data discoverability, access, sharing and use.

  17. Afsluttende rapport fra DEFF projektet “Support Open Access Publishing” (SOAP)

    DEFF Research Database (Denmark)

    Ekstrøm, Jeannette

    for hjælp og vejledning til de små tidsskrifters redaktører i forhold til ophavsret og open access. Anden del af projektets formål var at undersøge muligheden for etableringen af en database, som kan understøtte forskerne med at tage oplyste, valg når de vælger publiceringskanal. Dette skal ske ved...... at sammenstille en række kilder, såsom muligheder for open access, rankings, pris mv. Projektgruppen demonstrerer i foranalysen, at der findes kilder som kan anvendes og som har adgang til data og har åbne API’er. Og dette konkretiseres endelig i SOAP databasens mock-up. Endeligt afsluttes rapporten med...

  18. Enhancing NTIS Database Access at a Multi-Campus University.

    Science.gov (United States)

    Conkling, Thomas W.; Jordan, Kelly

    1997-01-01

    The Pennsylvania State University Libraries and the National Technical Information Service (NTIS) collaborated to bring the entire NTIS bibliographic database online on the University-wide information system and make it available for searching at all 21 Pennsylvania State campuses. This article also reviews the level of database and technical…

  19. Opening access to African scholarly content: Stellenbosch University's AOARI platforms

    Directory of Open Access Journals (Sweden)

    Dr Reggie Raju

    2013-03-01

    Full Text Available Africa is viewed as a consumer of the world's knowledge production. A significant factor influencing this status is the low research output, with the main contributor to this status being minimum access to scholarly content to support research. Stellenbosch University, a leading research institution on the African continent, is committed to contributing to changing this status quo through the distribution of its own research output utilizing open sources. Given the challenges that have plagued Africa in developing processes for the distribution of their research, Stellenbosch University has developed the African Open Access Repository Initiative (AOARI which uses open source software for two platforms that support the ‘green’ and ‘gold’ route to sharing scholarly literature: Ubuntu is used as the operating system, DSpace is used for its repository and Open Journal Systems for its publication platform. It is anticipated that AOARI will be the bridge that facilitates the sharing of research output and nurtures a culture of research production in Africa.

  20. 50 CFR 660.316 - Open access fishery-observer requirements.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Open access fishery-observer requirements... West Coast Groundfish-Open Access Fisheries § 660.316 Open access fishery—observer requirements. (a...(s) access to, and the use of, the vessel's navigation equipment and personnel, on request,...

  1. The surge of predatory open-access in neurosciences and neurology.

    Science.gov (United States)

    Manca, Andrea; Martinez, Gianluca; Cugusi, Lucia; Dragone, Daniele; Dvir, Zeevi; Deriu, Franca

    2017-06-14

    Predatory open access is a controversial publishing business model that exploits the open-access system by charging publication fees in the absence of transparent editorial services. The credibility of academic publishing is now seriously threatened by predatory journals, whose articles are accorded real citations and thus contaminate the genuine scientific records of legitimate journals. This is of particular concern for public health since clinical practice relies on the findings generated by scholarly articles. Aim of this study was to compile a list of predatory journals targeting the neurosciences and neurology disciplines and to analyze the magnitude and geographical distribution of the phenomenon in these fields. Eighty-seven predatory journals operate in neurosciences and 101 in neurology, for a total of 2404 and 3134 articles issued, respectively. Publication fees range 521-637 USD, much less than those charged by genuine open-access journals. The country of origin of 26.0-37.0% of the publishers was impossible to determine due to poor websites or provision of vague or non-credible locations. Of the rest 35.3-42.0% reported their headquarters in the USA, 19.0-39.2% in India, 3.0-9.8% in other countries. Although calling themselves "open-access", none of the journals retrieved was listed in the Directory of Open Access Journals. However, 14.9-24.7% of them were found to be indexed in PubMed and PubMed Central, which raises concerns on the criteria for inclusion of journals and publishers imposed by these popular databases. Scholars in the neurosciences are advised to use all the available tools to recognize predatory practices and avoid the downsides of predatory journals. Copyright © 2017 IBRO. Published by Elsevier Ltd. All rights reserved.

  2. OpenCourseWare, Global Access and the Right to Education: Real Access or Marketing Ploy?

    Science.gov (United States)

    Huijser, Henk; Bedford, Tas; Bull, David

    2008-01-01

    This paper explores the potential opportunities that OpenCourseWare (OCW) offers in providing wider access to tertiary education, based on the ideal of "the right to education." It first discusses the wider implications of OCW, and its underlying philosophy, before using a case study of a tertiary preparation program (TPP) at the…

  3. Modes of Access: The Influence of Dissemination Channels on the Use of Open Access Monographs

    Science.gov (United States)

    Snijder, Ronald

    2014-01-01

    Introduction: This paper studies the effects of several dissemination channels in an open access environment by analysing the download data of the OAPEN Library. Method: Download data were obtained containing the number of downloads and the name of the Internet provider. Based on public information, each Internet provider was categorised. The…

  4. Open access – deus ex machina for publishing scholarly journals?

    Directory of Open Access Journals (Sweden)

    Ivana Hebrang Grgić

    2015-09-01

    Full Text Available The article describes the evolution of scholarly communication through scholarly journals. It gives a short overview of the historical development, starting from the first journals in the 17th century to problems in the 20th century (such as increase in the number of journals, problems of accessibility, visibility, and journal access crisis. The open access (OA movement is described. It arose from the “old tradition” facing new technologies and was supposed to be the solution to the journal crisis that culminated in 1990s. The idea, defined in the Budapest Open Access Initiative, was to assure free and unrestricted online availability of peer-reviewed journal literature. The beginnings of formal scholarly communication, back in 1665, had similar ideas of making research results available to the widest possible public. The idea was excellent – removing access barriers would increase visibility, impact and quality of research. Research has shown that OA articles have better impact and visibility (Lawrence, Brody, Harnad, Haajem, etc.. However, publishing scientific information has its costs. New models have been developed, some of them causing new restrictions and barriers. The most popular model is the author-pays model (article processing charges, APC – if authors can afford to pay the processing charges, their work is published and thus more visible and more citable. However, if they cannot, a new problem arises – some research results, although valuable, are not published in open access and therefore they have lower visibility and impact. Another problem is the phenomenon of the so-called predatory publishers. Those publishers use the APC model but neglect quality control mechanisms in order to make profit. Their criteria for publishing are not positive peer-reviews but payments made by authors or their institutions. Predatory publishers’ practices are not only unethical, but also illegal, and they are a great threat to the

  5. Workshop "Italian Universities for Open Access: towards open access for scholarly literature" - Messina, Italy, November 4th-5th, 2004

    OpenAIRE

    Comba, Valentina

    2004-01-01

    This Workshop is the result of a long-term (and successful) effort of a group of Italian librarians and Institutions who are pursuiting the goal of innovation in the Italian e-publishing environment. At the Workshop Rectors and delegates from 31 Universities and the Istituto Italiano di Medicina Sociale signed the Messina Declaration, declaring "to agree to the 'Berlin Declaration on Open Access to knowledge in the Sciences and Humanities' and wishing that this act will represent just the fir...

  6. Medical education and information literacy in the era of open access.

    Science.gov (United States)

    Brower, Stewart M

    2010-01-01

    The Open Access movement in scholarly communications poses new issues and concerns for medical education in general and information literacy education specifically. For medical educators, Open Access can affect the availability of new information, instructional materials, and scholarship in medical education. For students, Open Access materials continue to be available to them post-graduation, regardless of affiliation. Libraries and information literacy librarians are challenged in their responses to the Open Access publishing movement in how best to support Open Access endeavors within their own institutions, and how best to educate their user base about Open Access in general.

  7. HCUP State Inpatient Databases (SID) - Restricted Access File

    Data.gov (United States)

    U.S. Department of Health & Human Services — The State Inpatient Databases (SID) contain the universe of hospital inpatient discharge abstracts in States participating in HCUP that release their data through...

  8. NODC Standard Product: World ocean database 2005 (NODC Accession 0099241)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The World Ocean Database 2005 (WOD05) DVD contains data, documentation, programs, and utilities for the latest release of this product. Data include 7.9 million...

  9. HCUP State Ambulatory Surgery Databases (SASD) - Restricted Access Files

    Data.gov (United States)

    U.S. Department of Health & Human Services — The State Ambulatory Surgery Databases (SASD) contain the universe of hospital-based ambulatory surgery encounters in participating States. Some States include...

  10. World-wide ocean optics database WOOD (NODC Accession 0092528)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — WOOD was developed to be a comprehensive publicly-available oceanographic bio-optical database providing global coverage. It includes nearly 250 major data sources...

  11. Global Ocean Currents Database (GOCD) (NCEI Accession 0093183)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Global Ocean Currents Database (GOCD) is a collection of quality controlled ocean current measurements such as observed current direction and speed obtained from...

  12. A Study of Innovative Features in Scholarly Open Access Journals

    Science.gov (United States)

    2011-01-01

    Background The emergence of the Internet has triggered tremendous changes in the publication of scientific peer-reviewed journals. Today, journals are usually available in parallel electronic versions, but the way the peer-review process works, the look of articles and journals, and the rigid and slow publication schedules have remained largely unchanged, at least for the vast majority of subscription-based journals. Those publishing firms and scholarly publishers who have chosen the more radical option of open access (OA), in which the content of journals is freely accessible to anybody with Internet connectivity, have had a much bigger degree of freedom to experiment with innovations. Objective The objective was to study how open access journals have experimented with innovations concerning ways of organizing the peer review, the format of journals and articles, new interactive and media formats, and novel publishing revenue models. Methods The features of 24 open access journals were studied. The journals were chosen in a nonrandom manner from the approximately 7000 existing OA journals based on available information about interesting journals and include both representative cases and highly innovative outlier cases. Results Most early OA journals in the 1990s were founded by individual scholars and used a business model based on voluntary work close in spirit to open-source development of software. In the next wave, many long-established journals, in particular society journals and journals from regions such as Latin America, made their articles OA when they started publishing parallel electronic versions. From about 2002 on, newly founded professional OA publishing firms using article-processing charges to fund their operations have emerged. Over the years, there have been several experiments with new forms of peer review, media enhancements, and the inclusion of structured data sets with articles. In recent years, the growth of OA publishing has also been

  13. Open Access Publishing in High-Energy Physics

    CERN Document Server

    Mele, S

    2007-01-01

    The goal of Open Access (OA) is to grant anyone, anywhere and anytime free access to the results of scientific research. The High- Energy Physics (HEP) community has pioneered OA with its "pre-print culture": the mass mailing, first, and the online posting, later, of preliminary versions of its articles. After almost half a century of widespread dissemination of pre-prints, the time is ripe for the HEP community to explore OA publishing. Among other possible models, a sponsoring consortium appears as the most viable option for a transition of HEP peer-reviewed literature to OA. A Sponsoring Consortium for Open Access Publishing in Particle Physics (SCOAP3) is proposed as a central body which would remunerate publishers for the peer-review service, effectively replacing the "reader-pays" model of traditional subscriptions with an "author-side" funding. Funding to SCOAP3 would come from HEP funding agencies and library consortia through a re-direction of subscriptions. This model is discussed in details togethe...

  14. A proposal for community driven and decentralized astronomical databases and the Open Exoplanet Catalogue

    OpenAIRE

    Rein, Hanno

    2012-01-01

    I present a new kind of astronomical database based on small text files and a distributed version control system. This encourages the community to work collaboratively. It creates a decentralized, completely open and democratic way of managing small to medium sized heterogeneous astronomical databases and catalogues. The use of the XML file format allows an easy to parse and read, yet dynamic and extendable database structure. The Open Exoplanet Catalogue is based on these principles and pres...

  15. LHC data to be made public via Open Access initiative

    CERN Multimedia

    Achintya Rao

    2013-01-01

    CMS has collected around 64 petabytes of analysable proton-proton data so far. Along with published papers, these data constitute the scientific legacy of the CMS collaboration, and preserving the data for future generations is crucial.   High-school students analysing CMS data. Image: Marzena Lapka. “To preserve not only the data but also the information on how to use them, we intend to make available through open access our data that are no longer under active analysis,” says Kati Lassila-Perini, head of the CMS Data Preservation and Open Access project at the Helsinki Institute of Physics. Although providing open scientific data allows potentially everyone to perform their own analyses, doing so is very difficult. CMS scientists working in groups take many months or even years to perform a single analysis. Each analysis must be scrutinised by the whole collaboration before a scientific paper can be published. CMS therefore decided to launch a pilot project for its ope...

  16. New OpenMP Directives for Irregular Data Access Loops

    Directory of Open Access Journals (Sweden)

    J. Labarta

    2001-01-01

    Full Text Available Many scientific applications involve array operations that are sparse in nature, ie array elements depend on the values of relatively few elements of the same or another array. When parallelised in the shared-memory model, there are often inter-thread dependencies which require that the individual array updates are protected in some way. Possible strategies include protecting all the updates, or having each thread compute local temporary results which are then combined globally across threads. However, for the extremely common situation of sparse array access, neither of these approaches is particularly efficient. The key point is that data access patterns usually remain constant for a long time, so it is possible to use an inspector/executor approach. When the sparse operation is first encountered, the access pattern is inspected to identify those updates which have potential inter-thread dependencies. Whenever the code is actually executed, only these selected updates are protected. We propose a new OpenMP clause, indirect, for parallel loops that have irregular data access patterns. This is trivial to implement in a conforming way by protecting every array update, but also allows for an inspector/executor compiler implementation which will be more efficient in sparse cases. We describe efficient compiler implementation strategies for the new directive. We also present timings from the kernels of a Discrete Element Modelling application and a Finite Element code where the inspector/executor approach is used. The results demonstrate that the method can be extremely efficient in practice.

  17. Open access for ALICE analysis based on virtualization technology

    CERN Document Server

    Buncic, P; Schutz, Y

    2015-01-01

    Open access is one of the important leverages for long-term data preservation for a HEP experiment. To guarantee the usability of data analysis tools beyond the experiment lifetime it is crucial that third party users from the scientific community have access to the data and associated software. The ALICE Collaboration has developed a layer of lightweight components built on top of virtualization technology to hide the complexity and details of the experiment-specific software. Users can perform basic analysis tasks within CernVM, a lightweight generic virtual machine, paired with an ALICE specific contextualization. Once the virtual machine is launched, a graphical user interface is automatically started without any additional configuration. This interface allows downloading the base ALICE analysis software and running a set of ALICE analysis modules. Currently the available tools include fully documented tutorials for ALICE analysis, such as the measurement of strange particle production or the nuclear modi...

  18. [The subject repositories of strategy of the Open Access initiative].

    Science.gov (United States)

    Soares Guimarães, M C; da Silva, C H; Horsth Noronha, I

    2012-11-01

    The subject repositories are defined as a set of digital objects resulting from the research related to a specific disciplinary field and occupy a still restricted space in the discussion agenda of the Free Access Movement when compared to amplitude reached in the discussion of Institutional Repositories. Although the Subject Repository comes to prominence in the field, especially for the success of initiatives such as the arXiv, PubMed and E-prints, the literature on the subject is recognized as very limited. Despite its roots in the Library and Information Science, and focus on the management of disciplinary collections (subject area literature), there is little information available about the development and management of subject repositories. The following text seeks to make a brief summary on the topic as a way to present the potential to develop subject repositories in order to strengthen the initiative of open access.

  19. Filling in the GAPS: evaluating completeness and coverage of open‐access biodiversity databases in the United States

    National Research Council Canada - National Science Library

    Troia, Matthew J; McManamay, Ryan A

    2016-01-01

    ...‐access electronic databases provide unprecedented access to these data, but their usefulness in characterizing species distributions and patterns in biodiversity depend on how complete species...

  20. An Access Path Model for Physical Database Design.

    Science.gov (United States)

    1979-12-28

    target system. 4.1 Algebraic Structure for Physical Design For the purposes of implementation-oriented design, we shall use the logical access paths...subsection, we present an algorithm for gen- erating a maximal labelling that specifies superior support for the access paths most heavily travelled. Assume...A.C.M. SIGMOD Conf., (May 79). [CARD731 Cardenas , A. F., "Evaluation and Selection of File Organization - A Model and a System," Comm. A.C.M., V 16, N

  1. Collection overview: ten years of wonderful open access science.

    Science.gov (United States)

    Roberts, Roland G; Alfred, Jane

    2013-10-01

    To mark our tenth Anniversary at PLOS Biology, we are launching a special, celebratory Tenth Anniversary PLOS Biology Collection which showcases 10 specially selected PLOS Biology research articles drawn from a decade of publishing excellent science. It also features newly commissioned articles, including thought-provoking pieces on the Open Access movement (past and present), on article-level metrics, and on the history of the Public Library of Science. Each research article highlighted in the collection is also accompanied by a PLOS Biologue blog post to extend the impact of these remarkable studies to the widest possible audience.

  2. ACCESS AND EQUITY: Challenges for Open and Distance Learning

    Directory of Open Access Journals (Sweden)

    TOJDE

    2008-04-01

    Full Text Available "The emergence of the system of open and distance education is an inevitable and phenomenal evolution in the history of educational developments internationally. While the formal system of education continues to be the mainstream of educational transaction, it has its inherent limitations with regard to expansion, provision of access and equity and cost-effectiveness. On the other hand, the growth of information and communication technologies has facilitated the expansion of distance mode of education. It is now possible to adopt flexible, constructivist, learner-friendly and multi-perspective approaches to teaching-learning, so essential for nurturing creativity, leadership, scholarship and integrated development of human personality.

  3. MARKET RENT DISSIPATION IN REGULATED OPEN ACCESS FISHERIES

    OpenAIRE

    Homans, Frances R.; Wilen, James E.

    2000-01-01

    Using a new model of markets in regulated open access resources, we illustrate the evolution of a fishery as demand for the product grows. We show that increased demand for fish in its fresh form shortens the fishing season and leads to the development of a market for processed fish. The model allows us to calculate the rent gains from rationalizing the fishery, and we show that much of the rent gains come on the market side as the season lengthens and more fish can be delivered to the higher...

  4. Open access pricing methodology in economically adapted electric transmission systems

    Energy Technology Data Exchange (ETDEWEB)

    Rudnick, Hugh; Cura, Eliana; Palma, Rodrigo [Pontificia Univ. Catolica de Chile, Santiago (Chile). Dept. de Ingenieria Electrica

    1996-07-01

    Open access pricing methodologies are evaluated in a deregulated environment, as applied to an economically adapted electric transmission system over a ten year time horizon. A transmission planning methodology using a genetic algorithm is used to determine the adapted system and the required investment over the horizon. A production cost simulation algorithm is utilized to determine the operation of the hydroelectric system and the resultant short term marginal income. Different pricing methodologies to allocate the required supplement, as applied to the Chilean central interconnected electrical system, are evaluated: use of system, postage stamp and user benefit. The resultant payment allocations are assessed and their economic impact on participants is discussed. (author)

  5. Open access - the new market approach to natural gas policy

    Energy Technology Data Exchange (ETDEWEB)

    Jensen, James T. (Jensen Associates, Inc., Boston, MA (United States))

    1992-10-01

    Efforts to stimulate market competition in gas suffer from two fundamental problems. High transport costs sharply limit the number of competing suppliers in any market and the industry has strong natural monopoly elements in portions of its delivery system. Government policy approaches in the USA, Canada, the UK and the continental EC have featured 'open access' pipeline transportation to link competing buyers and sellers. Because of regional differences, however, progress towards an ultimately workable system and the prospects for its success are very different in the four regions. (author).

  6. Collection overview: ten years of wonderful open access science.

    Directory of Open Access Journals (Sweden)

    Roland G Roberts

    2013-10-01

    Full Text Available To mark our tenth Anniversary at PLOS Biology, we are launching a special, celebratory Tenth Anniversary PLOS Biology Collection which showcases 10 specially selected PLOS Biology research articles drawn from a decade of publishing excellent science. It also features newly commissioned articles, including thought-provoking pieces on the Open Access movement (past and present, on article-level metrics, and on the history of the Public Library of Science. Each research article highlighted in the collection is also accompanied by a PLOS Biologue blog post to extend the impact of these remarkable studies to the widest possible audience.

  7. Marginal pricing and supplement cost allocation in transmission open access

    Energy Technology Data Exchange (ETDEWEB)

    Rudnick, H.; Palma, R.; Fernandez, J.E. [Pontificia Univ. Catolica de Chile, Santiago (Chile). Escuela de Ingenieria

    1995-05-01

    The application of marginal costing to transmission pricing in open access schemes requires the collection of a supplement to finance the transmission systems. The paper describes the application of marginal cost based pricing in the Chilean power system and the difficulties faced in allocating the supplement among parties involved. Alternatives methods for defining the allocation are formulated. Generalized generation and load distribution factors for cost allocation are formulated and implemented. The methods are applied to allocate payments for transmission services provided by the transmission network and by a distribution company.

  8. Open access e-books: the role of the institution

    Directory of Open Access Journals (Sweden)

    Paul Ayris

    2014-04-01

    Full Text Available This article explains the policy position taken by University College London (UCL in establishing the UCL Press. It sets the creation of the Press against the background of national open access (OA policy development in the UK. UCL Press, repatriated from a commercial provider, was relaunched as an OA press as part of UCL Library Services on 1 August 2013. The Press will publish both OA electronic journals and OA monographs, with a particular emphasis in the latter on the arts, humanities and social sciences. UCL is largely funding Press activity from its own internal funds, seeing OA as an opportunity rather than a threat.

  9. Co-operating for gold open access without APCs

    Directory of Open Access Journals (Sweden)

    Martin Paul Eve

    2015-03-01

    Full Text Available While article processing charges (APCs are emerging as a key way in which existing publishers can adapt to gold open access (OA, this mode is problematic in many ways. Considering the existing subscription publication ecosystem as a risk/cost-pooling mechanism leads to the conclusion that APCs are a concentration of risk that may come with damaging institutional consequences, particularly in the humanities disciplines. Consortial and co-operative modes of funding gold OA, however, do not come with these drawbacks but are susceptible to ‘free riders’. In this article, the theoretical backdrop to these models is addressed and the range of current offerings evaluated. Noting that classical economic incentives do not seem to operate in a world of inter-library loans, the article ends with a description of the model that is being implemented for the 'Open Library of Humanities' initiative, funded by the Andrew W Mellon Foundation.

  10. 牛津杂志拥抱OPEN ACCESS

    Institute of Scientific and Technical Information of China (English)

    袁理

    2005-01-01

    @@ 王牌杂志拥抱Open Access模式 牛津杂志系牛津大学出版社(OUP)的下属部门.该部门宣称从2005年1月起将其王牌杂志Nucleic Acids Research(NAR)转换成为完全的OA(OPEN ACCESS)出版模式.这一举措意味着相关的学术研究成果将最大限度的被传播,这也是作为世界一流大学领导的出版社--OUP的重要使命之一.

  11. Publishing Open-Access Biomedical Data: Legal Challenges

    Directory of Open Access Journals (Sweden)

    Sara Hugelier

    2015-01-01

    Full Text Available This review article gives a brief overview of some of the key legal challenges the OpenScienceLink, http://opensciencelink.eu (link is external (hereafter OSL project faced with publishing biomedical research data online on an open access and re-use basis. Firstly, we give an overview of some of the key privacy challenges that the OSL project faced. Secondly, we analyse the intellectual property chal-lenges that research data possesses and how this type of data could be pro-tected, considering that purely factual elements are generally not protected under intellectual property laws. In this respect, this article also looks at a number of licensing options for these specific types of data.

  12. Open Access Papers Have a Greater Citation Advantage in the Author-Pays Model

    Directory of Open Access Journals (Sweden)

    Elaine Sullo

    2016-03-01

    Full Text Available Objective – To investigate the citation performance of open access (OA and toll access (TA papers published in author-pays open access journals. Design – Longitudinal citation analysis. Setting – Publications in Springer and Elsevier’s author-pays open access journals. Subjects – 633 journals published using the author-pays model. This model encompasses both journals where the article processing charge (APC is required and journals in which authors can request open access and voluntarily pay APCs for accepted manuscripts. Methods – The authors identified APC funded journals (journals funded by mandatory author processing charges as well as those where authors voluntarily paid a fee in order to have their articles openly accessible from both Springer and Elsevier, and analyzed papers published in these journals from 2007 to 2011. The authors excluded journals that adopted the APC model later than 2007. To identify Springer titles, the authors created a search strategy to identify open access articles in SpringerLink. A total of 576 journals were identified and double checked in the Sherpa-Romeo database (a database of copyright and open access self-archiving policies of academic journals to verify their open access policies. The authors then downloaded the journal content using SpringerLink, and using Springer Author-Mapper, separated out the open access articles from the toll access articles. In order to identify the Elsevier APC funded journals, the authors referred to “Open Access Journal Directory: A-Z,” which contained 35 OA journals (p. 584. Once the authors consulted “Sponsored articles” issued by Elsevier and verified titles in Sherpa-Romeo, they identified 57 journals that fit the “author-pays” model. The bibliographic information was downloaded and OA articles were separated from TA articles. The authors confirmed that all journals were indeed OA publications by downloading the full-text from off-campus locations

  13. Open access for operational research publications from low- and middle-income countries: who pays?

    Science.gov (United States)

    Zachariah, R; Kumar, A M V; Reid, A J; Van den Bergh, R; Isaakidis, P; Draguez, B; Delaunois, P; Nagaraja, S B; Ramsay, A; Reeder, J C; Denisiuk, O; Ali, E; Khogali, M; Hinderaker, S G; Kosgei, R J; van Griensven, J; Quaglio, G L; Maher, D; Billo, N E; Terry, R F; Harries, A D

    2014-09-21

    Open-access journal publications aim to ensure that new knowledge is widely disseminated and made freely accessible in a timely manner so that it can be used to improve people's health, particularly those in low- and middle-income countries. In this paper, we briefly explain the differences between closed- and open-access journals, including the evolving idea of the 'open-access spectrum'. We highlight the potential benefits of supporting open access for operational research, and discuss the conundrum and ways forward as regards who pays for open access.

  14. Natural Language Access to Databases: Interpreting Update Requests

    Science.gov (United States)

    1981-09-30

    Database Systems" TR 11-79, Center for Research in Cjtnputing Technology, Harvard University, 1979. Frege, Gottlob : "On Sense and Reference": trans...Max Black, in Translations from the Philosophical V _ 22 Writinge of Gottlob Frege, P. Geach and M1. Black, eds., Bltackwell, Oxford, 1952 Hammer

  15. Data correction on July 4th, 2012 - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us Open...chemistry open_tggates_biochemistry.zip (666 KB) Simple search and download CEL file attachments Open...bout This Database Database Description Download License Update History of This Database Site Policy | Contact Us Data correction on July 4th, 2012 - Open TG-GATEs | LSDB Archive ...

  16. The impact of open access on the medical literature: a review of current literature

    Directory of Open Access Journals (Sweden)

    Nana Turk

    2017-02-01

    Full Text Available Background: the aim of the article is to conduct an overview of the impact of OA on the medical articles based on 3-part categorization.Methods: Data were identified by a search strategy with eight combinations of keywords (open access, citation impact, citation advantage, citation count, article download, article usage, social media attention, altmetrics and searched in three different databases.Results: the analysis was conducted on 107 studies dealing with citations, downloads and social impact. Sixty-seven of them simply employed the counting citations to OA and non-OA articles; nineteen articles compared the downloads and citations counts; and twenty-one articles investigated the social impact of OA articles. Twenty-five articles investigated the citations, download counts, and social impact of medical articles.Conclusions: The studies investigating the citation impact mostly showed citation advantages. Those that employed citation and download counts of medical articles using randomized controlled trials showed that OA articles were downloaded significantly more frequently, but found no evidence of a citation advantage for open access articles. The citation advantage from open access might be caused by other factors. Results of the studies comparing the social media attention and citations/downloads of the medical articles are often diametrically opposed.

  17. Cell sample - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...: open_tggates_cell.zip File URL: ftp://ftp.biosciencedbc.jp/archive/open-tggates...ase Description Download License Update History of This Database Site Policy | Contact Us Cell sample - Open TG-GATEs | LSDB Archive ...

  18. Open Access Article Processing Charges: DOAJ Survey May 2014

    Directory of Open Access Journals (Sweden)

    Heather Morrison

    2015-02-01

    Full Text Available As of May 2014, the Directory of Open Access Journals (DOAJ listed close to ten thousand fully open access, peer reviewed, scholarly journals. Most of these journals do not charge article processing charges (APCs. This article reports the results of a survey of the 2567 journals, or 26% of journals listed in DOAJ, that do have APCs based on a sample of 1432 of these journals. Results indicate a volatile sector that would make future APCs difficult to predict for budgeting purposes. DOAJ and publisher title lists often did not closely match. A number of journals were found on examination not to have APCs. A wide range of publication costs was found for every publisher type. The average (mean APC of $964 contrasts with a mode of $0. At least 61% of publishers using APCs are commercial in nature, while many publishers are of unknown types. The vast majority of journals charging APCs (80% were found to offer one or more variations on pricing, such as discounts for authors from mid to low income countries, differential pricing based on article type, institutional or society membership, and/or optional charges for extras such as English language editing services or fast track of articles. The complexity and volatility of this publishing landscape is discussed.

  19. Remote Sensing Open Access Journal: Increasing Impact through Quality Publications

    Directory of Open Access Journals (Sweden)

    Prasad S. Thenkabail

    2014-08-01

    Full Text Available Remote Sensing, an open access journal (http://www.mdpi.com/journal/remotesensing has grown at rapid pace since its first publication five years ago, and has acquired a strong reputation. It is a “pathfinder” being the first open access journal in remote sensing. For those academics who were used to waiting a year or two for their peer-reviewed scientific work to be reviewed, revised, edited, and published, Remote Sensing offers a publication time frame that is unheard of (in most cases, less than four months. However, we do this after multiple peer-reviews, multiple revisions, much editorial scrutiny and decision-making, and professional editing by an editorial office before a paper is published online in our tight time frame, bringing a paradigm shift in scientific publication. As a result, there has been a swift increase in submissions of higher and higher quality manuscripts from the best authors and institutes working on Remote Sensing, Geographic Information Systems (GIS, Global Navigation Satellite System (GNSS, GIScience, and all related geospatial science and technologies from around the world. The purpose of this editorial is to update everyone interested in Remote Sensing on the progress made over the last year, and provide an outline of our vision for the immediate future. [...

  20. A Bibliometric Study of Scholarly Articles Published by Library and Information Science Authors about Open Access

    Science.gov (United States)

    Grandbois, Jennifer; Beheshti, Jamshid

    2014-01-01

    Introduction: This study aims to gain a greater understanding of the development of open access practices amongst library and information science authors, since their role is integral to the success of the broader open access movement. Method: Data were collected from scholarly articles about open access by library and information science authors…

  1. 50 CFR 660.331 - Limited entry and open access fisheries-general.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Limited entry and open access fisheries... West Coast Groundfish Fisheries § 660.331 Limited entry and open access fisheries—general. All... entry and open access fisheries, except such fishing by treaty Indian tribes as may be...

  2. 77 FR 24646 - Open Access and Priority Rights on Interconnection Facilities

    Science.gov (United States)

    2012-04-25

    ... Energy Regulatory Commission 18 CFR Part 40 Open Access and Priority Rights on Interconnection Facilities... Inquiry, the Commission seeks comment on open access and priority rights for capacity on interconnection... ] 61,051 Docket Nos. Open Access and Priority Rights on Interconnection AD12-14-000 Facilities...

  3. A Matter of Discipline: Open Access, the Humanities, and Art History

    Science.gov (United States)

    Tomlin, Patrick

    2009-01-01

    Recent events suggest that open access has gained new momentum in the humanities, but the slow and uneven development of open-access initiatives in humanist fields continues to hinder the consolidation of efforts across the university. Although various studies have traced the general origins of the humanities' reticence to embrace open access, few…

  4. Open Access Theses in Institutional Repositories: An Exploratory Study of the Perceptions of Doctoral Students

    Science.gov (United States)

    Stanton, Kate Valentine; Liew, Chern Li

    2011-01-01

    Introduction: We examine doctoral students' awareness of and attitudes to open access forms of publication. Levels of awareness of open access and the concept of institutional repositories, publishing behaviour and perceptions of benefits and risks of open access publishing were explored. Method: Qualitative and quantitative data were collected…

  5. Almost Halfway There: An Analysis of the Open Access Behaviors of Academic Librarians

    Science.gov (United States)

    Mercer, Holly

    2011-01-01

    Academic librarians are increasingly expected to advocate for scholarly communications reforms such as open access to scholarly publications, yet librarians do not always practice what they preach. Previous research examined librarian attitudes toward open access, whereas this article presents results of a study of open access publishing and…

  6. This paper describes Open Access (OA). It discusses two main forms ...

    African Journals Online (AJOL)

    access publishing such as open access archives and open access journals. It ... online repository that is supported by an academic institution, scholarly ... maintained by universities and research institutions for works contributed by their .... access resources, which are arguably at greater risk, needs urgent attention, and.

  7. The SciELO Open Access: A Gold Way from the South

    Science.gov (United States)

    Packer, Abel L.

    2009-01-01

    Open access has long emphasized access to scholarly materials. However, open access can also mean access to the means of producing visible and recognized journals. This issue is particularly important in developing and emergent countries. The SciELO (Scientific Electronic Library On-line) project, first started in Brazil and, shortly afterward, in…

  8. The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases

    Directory of Open Access Journals (Sweden)

    Sullivan Christopher M

    2007-12-01

    Full Text Available Abstract Background Large molecular sequence databases are fundamental resources for modern bioscientists. Whether for project-specific purposes or sharing data with colleagues, it is often advantageous to maintain smaller sequence databases. However, this is usually not an easy task for the average bench scientist. Results We present the Personal Sequence Database (PSD, a suite of tools to create and maintain small- to medium-sized web-accessible sequence databases. All interactions with PSD tools occur via the internet with a web browser. Users may define sequence groups within their database that can be maintained privately or published to the web for public use. A sequence group can be downloaded, browsed, searched by keyword or searched for sequence similarities using BLAST. Publishing a sequence group extends these capabilities to colleagues and collaborators. In addition to being able to manage their own sequence databases, users can enroll sequences in BLASTAgent, a BLAST hit tracking system, to monitor NCBI databases for new entries displaying a specified level of nucleotide or amino acid similarity. Conclusion The PSD offers a valuable set of resources unavailable elsewhere. In addition to managing sequence data and BLAST search results, it facilitates data sharing with colleagues, collaborators and public users. The PSD is hosted by the authors and is available at http://bioinfo.cgrb.oregonstate.edu/psd/.

  9. An Open-Access Review to Determine Best Evidence-Based Practice for COPD

    Directory of Open Access Journals (Sweden)

    Beth Ann Walker

    2016-04-01

    Full Text Available Background: The manifestation of Chronic Obstructive Pulmonary Disease (COPD can have an enormous impact on individuals’ areas of occupation, specifically activities of daily living. Occupational therapy (OT practitioners have the ability to efficiently treat these clients using evidence-based interventions to achieve optimal functioning and quality of life. The purpose of this research study was to identify specific interventions supported by evidence for consumers with COPD using an open-access database for OT. Method: A thematic synthesis of 102 articles available on COPD via the open-access database OTseeker was used in this study. A constant comparison approach revealed seven descriptive themes for intervention including exercise, education, self-management, cognitive-behavioral therapy, complementary and alternative medicine therapy, breathing technique training, and nutrition. Results: For each theme, sub-themes were discussed and components of effective interventions were identified. Aspects of an evidence-based intervention program for individuals with COPD were outlined. Conclusion: Occupational therapists can use this evidence to thoroughly design well-rounded effective evidence-based intervention programs to enable individuals with COPD to live life to its fullest.

  10. Open Access to Data - Central Role for Geoinformatics

    Science.gov (United States)

    Snyder, W. S.

    2006-12-01

    The open access to scientific information has become a contentious issue. In the United States there are calls to make all published literature available for free within 6 months of publication, the notion being that this will promote better science and policy decisions based on science. Here, I argue that this is the incorrect approach to the issue of open access to scientific information. A fundamental problem raised by the call for open access to government-supported research results is the viability of our not-for-profit professional scientific societies. These societies provide the base level framework for the exchange of scientific ideas, and hence the very core of how we do science and how scientific knowledge is advanced. Why should a scientist subscribe to a journal if they can read the article for free in six months? A large portion of a society's operational costs come from these subscriptions and the sale of specialized books, all of which contain the results of federally-funded research. Without revenue from journal subscriptions and book sales, not only will these publications disappear, but many of societies may as well. Without a broad venue to publish and in which to interact, our science suffers - many subdisciplines may fade or even die - those that don't "sell well." Very popular publications such as "Nature", "Science", "Tectonics", and "Geology" will continue to thrive, but what about the more specialized journals such as "Journal of Paleontology"? They are costly to publish yet fill a very critical niche for our science. Many will still pay for reading the Nature/Science/Tectonics/Geology article, but where do we publish the mainstream science paper? We have to guard against becoming a "Hollywood Science" - where only the glitzy gets published because those are the articles that sell. We must have peer-reviewed, independent publications and viable professional societies, or our science will severely suffer. We can better approach the need for

  11. Why European Universities and Funding Agencies are Committing to Open Access

    Institute of Scientific and Technical Information of China (English)

    Frederick J Friend

    2006-01-01

    New opportunities presented by technological developments are being realised but more can be achieved in opening access to scientific reports and data. Funding agencies and universities are beginning to realise the benefits from an open access model for the dissemination of research results. European funding agencies and universities are following two strategies towards open access, the deposit of research reports in repositories and the conversion of journals to an open access business model. Various public statements have been made in support of open access, and several organizations-such as JISC in the UK-are undertaking work to assist all stakeholders in scholarly communication in introducing beneficial changes.

  12. The continued movement for open access to peer-reviewed literature.

    Science.gov (United States)

    Liesegang, Thomas J

    2013-09-01

    To provide a current overview of the movement for open access to the peer review literature. Perspective. Literature review of recent advances in the open access movement with a personal viewpoint of the nuances of the movement. The open access movement is complex, with many different constituents. The idealists for the open access movement are seeking open access to the literature but also to the data that constitute the research within the manuscript. The business model of the traditional subscription journal is being scrutinized in relation to the surge in the number of open access journals. Within this environment authors should beware predatory practices. More government and funding agencies are mandating open access to their funded research. This open access movement will continue to be disruptive until a business model ensures continuity of the scientific record. A flood of open access articles that might enrich, but also might pollute or confuse, the medical literature has altered the filtering mechanism provided by the traditional peer review system. At some point there may be a shake-out, with some literature being lost in cyberspace. The open access movement is maturing and must be embraced in some format. The challenge is to establish a sustainable financial business model that will permit the use of digital technology but yet not endanger the decades-old traditional publication model and peer review system. Authors seem to be slower in adopting open access than the idealists in the movement. Copyright © 2013 Elsevier Inc. All rights reserved.

  13. Open Access to the LHC takes on a new meaning

    CERN Multimedia

    2008-01-01

    Complete scientific documentation on the LHC machine and detectors is now freely available on the Web. The ATLAS collaboration, shown here, contributed to the 1,600-page scientific documentation of the LHC, along with staff from the other five detectors and the LHC machine.Now that the LHC tunnel and the experimental caverns are shut down for public visits, "Open Access to the LHC" has taken on an entirely new meaning. Last Thursday, 14 August, seven major articles were published electronically in a special issue of the Journal of Instrumentation (JINST). Together they form the complete scientific documentation on the design and construction of the LHC machine and the six detectors (ALICE, ATLAS, CMS, LHCb, LHCf and TOTEM), and thus on the entire LHC project, well before start-up on 10 September. For many years to come, these papers will serve as key references for the stream of scientific results that will begin to emerge from the ...

  14. Pricing of open-access transmission services in Texas

    Energy Technology Data Exchange (ETDEWEB)

    Baughman, Martin L. [Texas Univ., Electrical and Computer Engineering Dept., Austin, TX (United States)

    1997-09-01

    This paper describes the reorganization of the electricity industry within the Electric Reliability Council of Texas (ERCOT) and the system of administration and pricing of transmission of services that has been adopted and was placed into service in ERCOT starting January 1, 1997. Included is a summary of the physical and geographical ownership of the Texas system, with information on the mix of fuels and generation ownership patterns, and ownership of the transmission grid. How the electricity industry is being restructured within the interconnection to provide for open-access transmission is discussed, including discussion of the services that will be provided by the transmission segment of the industry, who is responsible for providing them, how they will be priced, and the role of the Independent System Operator (ISO). (author)

  15. Portfolio management : minimizing energy costs in an open access market

    Energy Technology Data Exchange (ETDEWEB)

    Greenberg, P. [U.S. Generating Company (United States)

    1998-09-01

    This presentation addressed the issue of evolving market structures for electric utilities, discussed portfolio management in an open access market and enumerated critical abilities that will be required for success in the new marketplace. Viewgraphs provided information regarding the current retail restructuring landscape and merchant plant activity by region. Bar graphs were included to represent the growth of power marketing and the results of utility divestiture auctions. Critical capabilities to successfully optimize a competitive energy portfolio, including functional integration, teamwork and goals alignment, the aggressive use of information technology, liquidity, and risk management, were discussed at length. As an example of the new approach, the structure and operating plans of PG and E, one of the largest unregulated energy trading company in the U.S., were reviewed. In brief, the company plans to be aggressive in all competitive energy markets, to focus on asset development and acquisition, and to gain liquidity through trading and marketing. 16 figs.

  16. Stranded cost recovery presents stumbling block to open access

    Energy Technology Data Exchange (ETDEWEB)

    Del Roccili, J.A.

    1996-04-01

    Much of the impetus for the movement to competitive power markets is a result of the tremendous variance in energy prices across the country. Large commercial and industrial customers are becoming increasingly aware of these discrepancies and are marshaling the market and political forces required to guarantee the eventual development of a national open-access transmission policy. Such a policy will facilitate competition and equalize prices on a regional, and to some extent, national level. The stumbling block, however, is the recovery of stranded investment. Under traditional regulation, historical costs could be collected through approved rates for a bundled service. With the protection of a monopoly franchise, average electricity prices provide the possibility of cost recovery for assets that might not be recoverable in a competitive market.

  17. Open access vs. common carriage in electricity supply

    Energy Technology Data Exchange (ETDEWEB)

    Brunekreeft, Gert [Freiburg Univ. (Germany)

    1997-05-01

    This paper examines the question of whether the upstream infrastructure monopolist in electricity transmission should be allowed to participate on the downstream generation market. The central assumption is that the downstream market is characterized by a U-shaped AC curve. Under this assumption, it will be shown that the unregulated upstream monopolist has an incentive for partial forward integration. He or she will, however, not have an incentive to foreclose fully the downstream market. Furthermore, it will be shown that allowing the upstream monopolist to be active on the downstream market is superior to forbidding this. In other words, under the assumptions of the model, open access will be superior to common carriage. (Author)

  18. NCBI2RDF: enabling full RDF-based access to NCBI databases.

    Science.gov (United States)

    Anguita, Alberto; García-Remesal, Miguel; de la Iglesia, Diana; Maojo, Victor

    2013-01-01

    RDF has become the standard technology for enabling interoperability among heterogeneous biomedical databases. The NCBI provides access to a large set of life sciences databases through a common interface called Entrez. However, the latter does not provide RDF-based access to such databases, and, therefore, they cannot be integrated with other RDF-compliant databases and accessed via SPARQL query interfaces. This paper presents the NCBI2RDF system, aimed at providing RDF-based access to the complete NCBI data repository. This API creates a virtual endpoint for servicing SPARQL queries over different NCBI repositories and presenting to users the query results in SPARQL results format, thus enabling this data to be integrated and/or stored with other RDF-compliant repositories. SPARQL queries are dynamically resolved, decomposed, and forwarded to the NCBI-provided E-utilities programmatic interface to access the NCBI data. Furthermore, we show how our approach increases the expressiveness of the native NCBI querying system, allowing several databases to be accessed simultaneously. This feature significantly boosts productivity when working with complex queries and saves time and effort to biomedical researchers. Our approach has been validated with a large number of SPARQL queries, thus proving its reliability and enhanced capabilities in biomedical environments.

  19. Electronic asthma action plan database: asthma action plan development using Microsoft Access.

    Science.gov (United States)

    Mangold, Rita A; Salzman, Gary A

    2005-04-01

    We created a user-friendly database for use with asthma management consistent with the national guidelines for asthma. A database was designed by using Microsoft Access for the creation of asthma action plans that can be shared between providers caring for patients with asthma. This database and the use of "form entry" improved documentation of asthma action plans, which are increasingly being used to assess appropriateness of care. We currently have 400 asthma action plans in the database. These action plans can be queried to document compliance with accepted best practices. Asthma action plans can be created and stored in an Access database that is both user-friendly and that can be networked to provide more consistent asthma care.

  20. Database of open-framework aluminophosphate syntheses:introduction and application(Ⅰ)

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The database of open-framework aluminophosphate(AlPO) syntheses has been established,which includes about 1600 synthetic records.Data analysis has been done on the basis of the framework composition,structure dimension,pore ring,and organic template.This database will serve as useful guidance for the rational synthesis of microporous functional materials.

  1. Database of open-framework aluminophosphate syntheses:introduction and application (Ⅰ)

    Institute of Scientific and Technical Information of China (English)

    YAN Yan; LI JiYang; QI Miao; ZHANG Xiao; YU JiHong; XU RuRen

    2009-01-01

    The database of open-framework aluminophosphate (AIPO) syntheses has been established,which Includes about 1600 synthetic records.Data analysis has been done on the basis of the framework composition,structure dimension,pore ring,and organic template.This database will serve as useful guidance for the rational synthesis of microporous functional materials.

  2. Open Access Publishing - A Challenge for Russian Psychology

    Directory of Open Access Journals (Sweden)

    BORIS B. VELICHKOVSKY

    2009-06-01

    Full Text Available Publication practices in Russian psychology have changed a lot since the break-up of the Soviet Union, but still differ substantially from those in the Western countries. In the last decade, an exponen-tial growth of the number of scientific psychological journals was observed, but in general, scientific publishing is not a profitable business in Russia. There is a lot of variability in the accessibility and quality of the journals. In sum, psychological publishing in today’s Russia is not well developed. Open access (OA publishing technologies seem to bring clear benefits to Russian psychology, but there are some problems that prevent their ready acceptance. First, there is a linguistic problem – Russian read-ers and writers have bad command of foreign languages. Second, there is a problem of background – Russian readers and writers are not used to Western-style research papers. Third, there is an economic problem – it is unclear, whether Russian universities and funding agencies will ever be ready to support publications in OA-journals. Thus, self-archiving and no-fee OA seem to be the most obvious ways to introduce OA to Russian psychologists.

  3. Growth of hybrid open access, 2009-2016.

    Science.gov (United States)

    Björk, Bo-Christer

    2017-01-01

    Hybrid Open Access is an intermediate form of OA, where authors pay scholarly publishers to make articles freely accessible within journals, in which reading the content otherwise requires a subscription or pay-per-view. Major scholarly publishers have in recent years started providing the hybrid option for the vast majority of their journals. Since the uptake usually has been low per journal and scattered over thousands of journals, it has been very difficult to obtain an overview of how common hybrid articles are. This study, using the results of earlier studies as well as a variety of methods, measures the evolution of hybrid OA over time. The number of journals offering the hybrid option has increased from around 2,000 in 2009 to almost 10,000 in 2016. The number of individual articles has in the same period grown from an estimated 8,000 in 2009 to 45,000 in 2016. The growth in article numbers has clearly increased since 2014, after some major research funders in Europe started to introduce new centralized payment schemes for the article processing charges (APCs).

  4. Open access of publications by veterinary faculty in the United States and Canada.

    Science.gov (United States)

    Nault, André J

    2011-01-01

    The free availability of full-text veterinary publications in MEDLINE-indexed journals by US and Canadian veterinary faculty from 2006-7 was determined. Additionally, publishing databases were searched to obtain general statistics on veterinary publishing. A survey of institutional initiatives to promote open-access journals and institutional repositories was also performed. Veterinary faculty published a total of 4,872 articles indexed by MEDLINE in 679 different journals. Of these articles, 1,334 (27%) were available as free full text and were published in 245 different journals. Although 51 veterinary-specific journals offering immediate and free full-text access were identified, few articles in this study appeared in these titles. Rather, most free scholarly articles by veterinary faculty appeared in journals with an embargo period. Academic veterinary institutions may want to recommend acceptance of alternate forms of information dissemination (such as open-access journals and journals published only digitally) to encourage greater global dissemination of their research findings. The promotion and use of digital institutional repositories is also an area for future investment and warrants additional research.

  5. In ... and out: open access publishing in scientific journals.

    Science.gov (United States)

    Boumil, Marcia M; Salem, Deeb N

    2014-01-01

    Open access (OA) journals are a growing phenomenon largely of the past decade wherein readers can access the content of scientific journals without paying for a subscription. The costs are borne by authors (or their institutions) who pay a fee to be published, thus allowing readers to access, search, print, and cite the journals without cost. Although the OA model, in and of itself, need not diminish scientific rigor, selectivity, or peer review, the "author pays" model creates an inherent conflict of interest: it operates with the incentive on the part of the journal to publish more and reject less. This is coupled with cost containment measures that affect the journals' ability to engage experienced editors and professional staff to scrutinize data, data analyses, and author conflicts of interest. While some OA journals appear to be comparable to their print competitors, others are "predatory" and have no legitimacy at all. Two recent "scams"--one recently published in Science--highlight the urgency of addressing the issues raised by OA publication so that OA does not lose its credibility just as it begins to gather substantial momentum. High-quality journals develop their reputations over time, and OA outlets will be no exception. For this to occur, however, the OA audience will need to be satisfied that OA can deliver high-quality publications utilizing rigorous peer review, editing, and conflict of interest scrutiny. Academic tenure and promotion committees that review scholarly credentials are understandably skeptical of publications in unrecognized journals, and the large number of new OA outlets contributes to this urgency from their perspective as well.

  6. Open Access, Library Subscriptions, and Article Processing Charges

    KAUST Repository

    Vijayakumar, J.K.

    2016-05-01

    Hybrid journals contains articles behind a pay-wall to be subscribed, as well as papers made open access when author pays article processing charge (APC). In such cases, an Institution will end up paying twice and Publishers tend to double-dip. Discussions and pilot models are emerging on pricing options, such as “offset pricing,” [where APCs are adjusted or discounted with subscription costs as vouchers or reductions in next year subscriptions, APCs beyond the subscription costs are modestly capped etc] and thus reduce Institutions’ cost. This presentation will explain different models available and how can we attain a transparent costing structure, where the scholarly community can feel the fairness in Publishers’ pricing mechanisms. Though most of the offset systems are developed through national level or consortium level negotiations, experience of individual institutions, like KAUST that subscribe to large e-journals collections, is important in making right decisions on saving Institutes costs and support openness in scholarly communications.

  7. El paisaje de los repositorios institucionales open access en España

    OpenAIRE

    Melero, Remedios

    2008-01-01

    [EN] The open access movement has made significant progress in recent years, despite still being relatively new to Spain. Twenty-one Spanish institutions, including sixteen universities, have signed the Declaration. In terms of Spain’s presence in international directories, the current figures for the Registry of Open Access Repositories (ROAR) and the Directory of Open Access Repositories (OpenDOAR) are 32 and 33 repositories respectively. However, some recently-created repositories or those...

  8. Più citazioni in Open Access? Panorama della letteratura con uno studio sull'Impact Factor delle riviste Open Access

    OpenAIRE

    Giglia, Elena

    2009-01-01

    The Open Access is the new major activity in the panorama of contemporary scientific literature. The availability of scientific articles freely placed on the Web by the researchers, in accordance with copyright laws and under the two modes of self-archiving or Open journals, has triggered a broad debate about the opportunities offered by the Open Access (OA) on the growth of citations and downloads. Many studies conducted on different data sets and from different points of view, lead to varie...

  9. Open access to the scientific journal literature: situation 2009.

    Science.gov (United States)

    Björk, Bo-Christer; Welling, Patrik; Laakso, Mikael; Majlender, Peter; Hedlund, Turid; Gudnason, Gudni

    2010-06-23

    The Internet has recently made possible the free global availability of scientific journal articles. Open Access (OA) can occur either via OA scientific journals, or via authors posting manuscripts of articles published in subscription journals in open web repositories. So far there have been few systematic studies showing how big the extent of OA is, in particular studies covering all fields of science. The proportion of peer reviewed scholarly journal articles, which are available openly in full text on the web, was studied using a random sample of 1837 titles and a web search engine. Of articles published in 2008, 8.5% were freely available at the publishers' sites. For an additional 11.9% free manuscript versions could be found using search engines, making the overall OA percentage 20.4%. Chemistry (13%) had the lowest overall share of OA, Earth Sciences (33%) the highest. In medicine, biochemistry and chemistry publishing in OA journals was more common. In all other fields author-posted manuscript copies dominated the picture. The results show that OA already has a significant positive impact on the availability of the scientific journal literature and that there are big differences between scientific disciplines in the uptake. Due to the lack of awareness of OA-publishing among scientists in most fields outside physics, the results should be of general interest to all scholars. The results should also interest academic publishers, who need to take into account OA in their business strategies and copyright policies, as well as research funders, who like the NIH are starting to require OA availability of results from research projects they fund. The method and search tools developed also offer a good basis for more in-depth studies as well as longitudinal studies.

  10. Open access to the scientific journal literature: situation 2009.

    Directory of Open Access Journals (Sweden)

    Bo-Christer Björk

    Full Text Available BACKGROUND: The Internet has recently made possible the free global availability of scientific journal articles. Open Access (OA can occur either via OA scientific journals, or via authors posting manuscripts of articles published in subscription journals in open web repositories. So far there have been few systematic studies showing how big the extent of OA is, in particular studies covering all fields of science. METHODOLOGY/PRINCIPAL FINDINGS: The proportion of peer reviewed scholarly journal articles, which are available openly in full text on the web, was studied using a random sample of 1837 titles and a web search engine. Of articles published in 2008, 8.5% were freely available at the publishers' sites. For an additional 11.9% free manuscript versions could be found using search engines, making the overall OA percentage 20.4%. Chemistry (13% had the lowest overall share of OA, Earth Sciences (33% the highest. In medicine, biochemistry and chemistry publishing in OA journals was more common. In all other fields author-posted manuscript copies dominated the picture. CONCLUSIONS/SIGNIFICANCE: The results show that OA already has a significant positive impact on the availability of the scientific journal literature and that there are big differences between scientific disciplines in the uptake. Due to the lack of awareness of OA-publishing among scientists in most fields outside physics, the results should be of general interest to all scholars. The results should also interest academic publishers, who need to take into account OA in their business strategies and copyright policies, as well as research funders, who like the NIH are starting to require OA availability of results from research projects they fund. The method and search tools developed also offer a good basis for more in-depth studies as well as longitudinal studies.

  11. Memorandum "Open Metadata". Open Access to Documentation Forms and Item Catalogs in Healthcare.

    Science.gov (United States)

    Dugas, M; Jöckel, K-H; Friede, T; Gefeller, O; Kieser, M; Marschollek, M; Ammenwerth, E; Röhrig, R; Knaup-Gregori, P; Prokosch, H-U

    2015-01-01

    At present, most documentation forms and item catalogs in healthcare are not accessible to the public. This applies to assessment forms of routine patient care as well as case report forms (CRFs) of clinical and epidemiological studies. On behalf of the German chairs for Medical Informatics, Biometry and Epidemiology six recommendations to developers and users of documentation forms in healthcare were developed. Open access to medical documentation forms could substantially improve information systems in healthcare and medical research networks. Therefore these forms should be made available to the scientific community, their use should not be unduly restricted, they should be published in a sustainable way using international standards and sources of documentation forms should be referenced in scientific publications.

  12. Institutional open access funds: now is the time.

    Directory of Open Access Journals (Sweden)

    Charles D Eckman

    2010-05-01

    experiment is particularly heightened during this economic crisis when investments in subscriptions are increasingly difficult to justify, particularly given the alternate forms of open access to content and decreasing ability for libraries to reliably distinguish OA and non-OA content within the journal. We believe that institutions (and the sub-institutional units that manage collection funds should be open to exploring alternative funding models for scholarly communication. Institutions should highly value funding models that promote universal access to their research output. And during an economic crisis, these institutions should question the extensive financial and human resource investments required by the subscription model, a model that both excludes nonauthorized users and entails large-scale and complex licensing and legal obligations. The time is now for broad-scale adoption of institutional OA funds.

  13. Download - Open TG-GATEs Pathological Image Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available formation open_tggates_pathological_image.zip (370 KB) Simple search and download 3 Pathological Images (SVS... format) Digital pathological images in SVS format - Downlaod via FTP Joomla SEF

  14. Amplifying the Impact of Open Access: Wikipedia and the Diffusion of Science

    CERN Document Server

    Teplitskiy, Misha; Duede, Eamon

    2015-01-01

    With the rise of Wikipedia as a first-stop source for scientific knowledge, it is important to compare its representation of that knowledge to that of the academic literature. This article approaches such a comparison through academic references made within the worlds 50 largest Wikipedias. Previous studies have raised concerns that Wikipedia editors may simply use the most easily accessible academic sources rather than sources of the highest academic status. We test this claim by identifying the 250 most heavily used journals in each of 26 research fields (4,721 journals, 19.4M articles in total) indexed by the Scopus database, and modeling whether topic, academic status, and accessibility make articles from these journals more or less likely to be referenced on Wikipedia. We find that, controlling for field and impact factor, the odds that an open access journal is referenced on the English Wikipedia are 47% higher compared to closed access journals. Moreover, in most of the worlds Wikipedias a journals hig...

  15. Organ weight - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...name: open_tggates_organ_weight.zip File URL: ftp://ftp.biosciencedbc.jp/archive/...load License Update History of This Database Site Policy | Contact Us Organ weight - Open TG-GATEs | LSDB Archive ...

  16. Some LIS Faculty Indicate Reservations about Open Access

    Directory of Open Access Journals (Sweden)

    Richard Hayman

    2016-09-01

    Full Text Available A Review of: Peekhaus, W., & Proferes, N. (2015. How library and information science faculty perceive and engage with open access. Journal of Information Science, 41(5, 640-661. http://dx.doi.org/10.1177/0165551515587855 Objective – To examine the awareness of, attitudes toward, and engagement with open access (OA publishing, based on rank and tenure status among library and information science (LIS faculty in North America. Design – Web-based survey distributed via email. Setting – Accredited library and information science (LIS programs in North America. Subjects – 276 professors and professors emeriti. Methods – Researchers collected email addresses for 1,017 tenure-track, tenured, and emeriti professors from the public websites of the LIS programs. Researchers sent an email invitation to participate in the survey by accessing a URL, with the survey itself delivered using Qualtrics software. The survey included 51 total questions, some with additional sub-questions, and most items used Likert-type rating scale. The researchers analysed the data using SPSS software, and indicated using chi-square tests to measure significance, with a stated intent to get beyond the descriptive statistics commonly seen in other publications. Main Results – This study’s results draw on 276 completed responses, for a response rate of 27%. Researchers reported that 53% of respondents had some experience with publishing in a peer-reviewed OA format. When asked whether they agreed that scholarly articles should be free to access for everyone, pre-tenure assistant professors were most likely to agree (74%, followed by tenured associate professors (62%, full professors (59% and then emeriti professors (8%. However, they found less likelihood that associate professors would have actually published in an OA format, highlighting a “disconnect between beliefs about accessibility of research and actual practice with open access” (p. 646. Researchers also

  17. Measuring, Rating, Supporting, and Strengthening Open Access Scholarly Publishing in Brazil

    Science.gov (United States)

    Neto, Silvio Carvalho; Willinsky, John; Alperin, Juan Pablo

    2016-01-01

    This study assesses the extent and nature of open access scholarly publishing in Brazil, one of the world's leaders in providing universal access to its research and scholarship. It utilizes Brazil's Qualis journal evaluation system, along with other relevant data bases to address the association between scholarly quality and open access in the…

  18. A Comparison of Student Confidence Levels in Open Access and Undergraduate University Courses

    Science.gov (United States)

    Atherton, Mirella

    2017-01-01

    Confidence levels of students enrolled in open access programs and undergraduate courses were measured at the University of Newcastle. The open access science students aimed to gain access to undergraduate studies in various disciplines at University. The undergraduate students were enrolled in a variety of degrees and were surveyed during their…

  19. openBIS ELN-LIMS: an open-source database for academic laboratories

    OpenAIRE

    Barillari, Caterina; Ottoz, Diana S. M.; Fuentes-Serna, Juan Mariano; Ramakrishnan, Chandrasekhar; Rinn, Bernd; Rudolf, Fabian

    2015-01-01

    Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. Availabil...

  20. Spanish scientific journals on Psychology (II: editorial quality, visibility, internationality and editors attitude towards Open Access

    Directory of Open Access Journals (Sweden)

    ELEA GIMÉNEZ-TOLEDO

    2009-06-01

    Full Text Available This paper aims to present the situation of Spanish Psychology journals with regard to certain qual-ity parameters obtained from two Spanish journal evaluation systems (RESH and DICE, Latindex and others.First of all, the publishing profile is analyzed in relation to the publication frequency compliance and other international standards for scientific publications. In addition, the level of international dis-semination of Spanish Psychology journals in international databases is also examined, as a reflection of its quality and the interest that such a journal provokes in the scientific community. The best ten Spanish journals are identified according to the parameters considered in DICE: compliance with the publication frequency established, variety of institutions that contribute articles to the journal (contribu-tion openness, variety of institutions represented at the editorial board (editorial board openness, if it has a peer review system, the number of Latindex criteria that the journal fulfils and its level of pres-ence in international databases. Finally, editors’ attitude towards online journals and Open Access as well as the internationality of editorial boards and authorship are analysed.Some results: a most journals follow international publishing conventions and watch for the time-liness of publication; b a third of the journals are well represented in international databases; c taking into account six quality criteria, there are 25-30 high level or competitive journals; d a cautious atti-tude towards OA is observed in Spanish Psychology journals; e according to the “internationality” of Psychology as a scientific domain, journals must make an effort to include foreign members in their advisory or scientific boards in order to attract papers from other countries. Around 20 journals have good levels of foreign authors and advisors.